Psyllid ID: psy12731

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAQ
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHccccccccEEEEccccccccccccHHccccccccEEEEEEccccEEHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHccccccHHcEEEccccccccccHHHHHHcccccccEEEEEcccccccEEEEEHHHHcccEEEEHHHHccccHEcccccccccccEccc
Coil and Loop (DISEMBL)
mevsgsftvkDIKKEVHKAKSQLYPDRQAVRLEIKgkilkdsddvkslglkngdmvfikdlgpqigwSTVFMAEYAGPLFVYLIFYyrpwifygseaaskpysyvaq
Flexible Loop (DISEMBL)
mevsgsftvkdikkevhkaksqlypdrqaVRLEikgkilkdsddvkslglkngDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSeaaskpysyvaq
Low Complexity Region (SEG)
MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAQ
Disordered region (IsUnstruct)
****************************AVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSE***********
Disordered Region (DISOPRED)
*E*SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEA**********
Disordered Region (DISEMBL)
MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAQ
Disordered Region (DISPRO)
*EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEA**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
Q9N5Y2	308	Probable very-long-chain	yes	N/A	0.906	0.314	0.530	3e-22
Q9NZ01	308	Very-long-chain enoyl-CoA	yes	N/A	0.887	0.308	0.452	2e-18
Q3ZCD7	308	Very-long-chain enoyl-CoA	yes	N/A	0.887	0.308	0.452	2e-18
Q9CY27	308	Very-long-chain enoyl-CoA	yes	N/A	0.887	0.308	0.452	2e-18
Q64232	308	Very-long-chain enoyl-CoA	yes	N/A	0.887	0.308	0.452	2e-18
Q5HYJ1	363	Trans-2,3-enoyl-CoA reduc	no	N/A	0.925	0.272	0.42	3e-18
Q3SZ89	363	Trans-2,3-enoyl-CoA reduc	no	N/A	0.925	0.272	0.4	2e-17
Q8BFZ1	361	Trans-2,3-enoyl-CoA reduc	no	N/A	0.925	0.274	0.383	9e-17
Q55C17	300	Very-long-chain enoyl-CoA	yes	N/A	0.794	0.283	0.404	1e-11
Q9M2U2	310	Very-long-chain enoyl-CoA	yes	N/A	0.943	0.325	0.330	3e-10

>sp|Q9N5Y2|TECR_CAEEL Probable very-long-chain enoyl-CoA reductase art-1 OS=Caenorhabditis elegans GN=art-1 PE=3 SV=1

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 67/98 (68%), Gaps = 1/98 (1%)

Query: 3   VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV-FIKDL 61
           +SGS T+K IKK + + K +L  +RQA+R+E KGK L D   +  LGL +   V +++DL
Sbjct: 23  ISGSETIKAIKKRIAQKKLKLTEERQALRVEPKGKPLADDQKLSDLGLSSQKAVLYVRDL 82

Query: 62  GPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAAS 99
           GPQI W TVFMAEYAGPLFVY +FY RP   YG  A +
Sbjct: 83  GPQIAWKTVFMAEYAGPLFVYPLFYLRPTFIYGQAAVN 120

Reduces trans-2,3-acyl-CoA to acyl-CoA of long and very long chain fatty acids.
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 9EC: 3

>sp|Q9NZ01|TECR_HUMAN Very-long-chain enoyl-CoA reductase OS=Homo sapiens GN=TECR PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 60/95 (63%)

Query: 2   EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
           +V    T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DL
Sbjct: 22  KVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL 81

Query: 62  GPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSE 96
           G QI W TVF+ EYAGPLF+YL+FY+R    YG +
Sbjct: 82  GAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHK 116

Reduces trans-2,3-stearoyl-CoA to stearoyl-CoA of long and very long chain fatty acids.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q3ZCD7|TECR_BOVIN Very-long-chain enoyl-CoA reductase OS=Bos taurus GN=TECR PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 60/95 (63%)

Query: 2   EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
           +V    T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DL
Sbjct: 22  KVEPQATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL 81

Query: 62  GPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSE 96
           G QI W TVF+ EYAGPLF+YL+FY+R    YG +
Sbjct: 82  GAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGRK 116

Reduces trans-2,3-stearoyl-CoA to stearoyl-CoA of long and very long chain fatty acids.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q9CY27|TECR_MOUSE Very-long-chain enoyl-CoA reductase OS=Mus musculus GN=Tecr PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 60/95 (63%)

Query: 2   EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
           +V    T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DL
Sbjct: 22  KVEPQATISEIKTLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL 81

Query: 62  GPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSE 96
           G QI W TVF+ EYAGPLF+YL+FY+R    YG +
Sbjct: 82  GAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGRK 116

Reduces trans-2,3-stearoyl-CoA to stearoyl-CoA of long and very long chain fatty acids.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q64232|TECR_RAT Very-long-chain enoyl-CoA reductase OS=Rattus norvegicus GN=Tecr PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 60/95 (63%)

Query: 2   EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
           +V    T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DL
Sbjct: 22  KVEPQATISEIKTLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL 81

Query: 62  GPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSE 96
           G QI W TVF+ EYAGPLF+YL+FY+R    YG +
Sbjct: 82  GAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGRK 116

Reduces trans-2,3-stearoyl-CoA to stearoyl-CoA of long and very long chain fatty acids.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q5HYJ1|TECRL_HUMAN Trans-2,3-enoyl-CoA reductase-like OS=Homo sapiens GN=TECRL PE=2 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/100 (42%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 2   EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
           +V+ S T+ D+K++ HKA  + YP R  ++LE  G  LKD   ++S+   +   ++  DL
Sbjct: 78  KVTQSSTIHDVKQKFHKACPKWYPSRVGLQLECGGPFLKDYITIQSIAASSIVTLYATDL 137

Query: 62  GPQIGWSTVFMAEYAGPLFVYLIFYYR-PWIFYGSEAASK 100
           G Q+ W+TVF+AEY GPL +YL+FY R P I+ G E+A +
Sbjct: 138 GQQVSWTTVFLAEYTGPLLIYLLFYLRIPCIYDGKESARR 177

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q3SZ89|TECRL_BOVIN Trans-2,3-enoyl-CoA reductase-like OS=Bos taurus GN=TECRL PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 2   EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
           +V+   T+ D+K++ HKA  Q YP R  ++LE  G  LKD+  ++S+   +   ++  DL
Sbjct: 78  KVTQKSTIHDVKQKFHKACPQWYPSRVGLQLERGGPFLKDNLTIQSVAASSIVTLYFTDL 137

Query: 62  GPQIGWSTVFMAEYAGPLFVYLIFYYR-PWIFYGSEAASK 100
           G Q+ W+TVF+AEY GPL +YL+FY R P+I+   E++ +
Sbjct: 138 GQQVSWTTVFLAEYTGPLLIYLLFYLRIPYIYNMKESSRR 177

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BFZ1|TECRL_MOUSE Trans-2,3-enoyl-CoA reductase-like OS=Mus musculus GN=Tecrl PE=2 SV=1

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 64/99 (64%)

Query: 2   EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
           +V+ + T+ D+K++ HKA  + YP R  ++LE  G  L+D   V+S+   +   ++  DL
Sbjct: 76  KVTQTSTIHDVKQKFHKACPKWYPSRIGLQLEYGGPYLRDYITVQSVAASSIITLYFTDL 135

Query: 62  GPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASK 100
           G Q+GW+TVF+AEY+GPL +YL+FY R    Y  + +++
Sbjct: 136 GQQVGWTTVFLAEYSGPLLIYLLFYLRSSYIYDVKESTR 174

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q55C17|TECR_DICDI Very-long-chain enoyl-CoA reductase OS=Dictyostelium discoideum GN=gpsn2 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 14/99 (14%)

Query: 9   VKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV----------FI 58
           V ++KK++  +K++L  +R  +RL +  K  K  +  ++LG K+ D+V          + 
Sbjct: 26  VGELKKQI-SSKTRLGTER--IRLAVPSKTSKLPNAFEALG-KDSDLVSKHVGADSTLYF 81

Query: 59  KDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEA 97
           KDLGPQI WS VF+ EYAGPLFVY IFY+   + YG+++
Sbjct: 82  KDLGPQISWSLVFICEYAGPLFVYPIFYFLSNLIYGTDS 120

Reduces trans-2,3-stearoyl-CoA to stearoyl-CoA of long and very long chain fatty acids.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q9M2U2|ECR_ARATH Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana GN=ECR PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 11/112 (9%)

Query: 1   MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI------KGKILKDSDDVKSL--GLKN 52
           +++  S TV D+++  HK   + YP RQ + L +      K  +L     +K    G  N
Sbjct: 18  LDLPDSATVADLQEAFHKRAKKFYPSRQRLTLPVTPGSKDKPVVLNSKKSLKEYCDGNNN 77

Query: 53  GDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRP---WIFYGSEAASKP 101
              V  KDLG Q+ + T+F  EY GPL +Y +FYY P   ++ YG +    P
Sbjct: 78  SLTVVFKDLGAQVSYRTLFFFEYLGPLLIYPVFYYFPVYKFLGYGEDCVIHP 129

Enoyl-CoA reductase responsible for the second reduction step in very long-chain fatty acids (VLCFAs) synthesis. Required for the elongation of fatty acids precursors of sphingolipids, storage lipids and cuticular waxes.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 9

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
242247171	196	trans-2,3-enoyl-CoA reductase-like [Acyr	0.934	0.510	0.65	1e-32
239789843	299	ACYPI001763 [Acyrthosiphon pisum]	0.934	0.334	0.65	3e-32
242004484	302	synaptic glycoprotein SC2, putative [Ped	0.990	0.350	0.556	4e-30
321465308	301	hypothetical protein DAPPUDRAFT_199063 [	1.0	0.355	0.532	2e-27
241174236	285	steroid reductase, putative [Ixodes scap	0.981	0.368	0.533	2e-27
195337253	302	GM14597 [Drosophila sechellia] gi|194128	0.962	0.341	0.561	3e-26
194866183	302	GG15168 [Drosophila erecta] gi|190653580	0.962	0.341	0.552	3e-26
291224755	304	PREDICTED: steroid Alpha ReducTase famil	0.925	0.325	0.565	4e-26
195435792	302	GK16849 [Drosophila willistoni] gi|19416	0.953	0.337	0.575	4e-26
211938631	306	FI06688p [Drosophila melanogaster]	0.962	0.336	0.542	5e-26

>gi|242247171|ref|NP_001156089.1| trans-2,3-enoyl-CoA reductase-like [Acyrthosiphon pisum] gi|239789845|dbj|BAH71521.1| ACYPI001763 [Acyrthosiphon pisum]

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 81/100 (81%)

Query: 1   MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60
           ++V+ +  + DIKK + K KS LYPDRQ++RLE +GK LKD+D VK LGLKNG  +++KD
Sbjct: 16  IKVTDASQISDIKKSISKVKSALYPDRQSIRLEARGKSLKDTDKVKDLGLKNGSKLYVKD 75

Query: 61  LGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASK 100
           LGPQIGWSTVFMAEYAGPLFVYL+FY RP +FYG+ A  K
Sbjct: 76  LGPQIGWSTVFMAEYAGPLFVYLLFYARPSLFYGATANQK 115

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239789843|dbj|BAH71520.1| ACYPI001763 [Acyrthosiphon pisum]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 81/100 (81%)

Query: 1   MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60
           ++V+ +  + DIKK + K KS LYPDRQ++RLE +GK LKD+D VK LGLKNG  +++KD
Sbjct: 16  IKVTDASQISDIKKSISKVKSALYPDRQSIRLEARGKSLKDTDKVKDLGLKNGSKLYVKD 75

Query: 61  LGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASK 100
           LGPQIGWSTVFMAEYAGPLFVYL+FY RP +FYG+ A  K
Sbjct: 76  LGPQIGWSTVFMAEYAGPLFVYLLFYARPSLFYGATANQK 115

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004484|ref|XP_002423113.1| synaptic glycoprotein SC2, putative [Pediculus humanus corporis] gi|212506059|gb|EEB10375.1| synaptic glycoprotein SC2, putative [Pediculus humanus corporis]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 81/106 (76%)

Query: 2   EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
             S S TV  +KKEV+K   +L+P+RQ+++L++KGK LKD+D +KSL L +G  V++KDL
Sbjct: 19  NASSSTTVAQLKKEVYKLNKKLHPNRQSLKLDVKGKALKDNDTLKSLNLMDGSKVYVKDL 78

Query: 62  GPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAQ 107
           GPQIGW TVF+AEYAGPL VYL+FY RPW+ YG++  + PY +V  
Sbjct: 79  GPQIGWKTVFLAEYAGPLGVYLLFYQRPWLIYGNDVENLPYHFVVH 124

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321465308|gb|EFX76310.1| hypothetical protein DAPPUDRAFT_199063 [Daphnia pulex]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 77/107 (71%)

Query: 1   MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60
           + V  + T+K++K ++H+ KS LYPDRQ  R E +GK L +S  V +LGLK+   +++KD
Sbjct: 17  LTVDPNSTLKELKTQIHRLKSHLYPDRQEFRQEPRGKGLDESKTVAALGLKDKSKLYLKD 76

Query: 61  LGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAQ 107
           LGPQI W TVF+ EYAGPLFVY   Y RPW+FYG +AAS+P S V+ 
Sbjct: 77  LGPQIAWKTVFLTEYAGPLFVYAWIYTRPWLFYGEDAASQPMSQVSH 123

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241174236|ref|XP_002410985.1| steroid reductase, putative [Ixodes scapularis] gi|215495072|gb|EEC04713.1| steroid reductase, putative [Ixodes scapularis]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 79/105 (75%)

Query: 3   VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62
           V  S T+ DIKK+VH+ K +LYPDRQ+++ E KGK L+D++ +KSL  K+G  +++KDLG
Sbjct: 1   VDPSATITDIKKQVHRIKPKLYPDRQSLKSEPKGKSLRDNETLKSLNFKSGSQLYLKDLG 60

Query: 63  PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAQ 107
           PQIGW TVF+ EY GPL +YL+ Y RP +FYG++A +KP  +V  
Sbjct: 61  PQIGWKTVFLVEYFGPLALYLVTYTRPSLFYGADAHTKPMHFVVH 105

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195337253|ref|XP_002035243.1| GM14597 [Drosophila sechellia] gi|194128336|gb|EDW50379.1| GM14597 [Drosophila sechellia]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 4   SGSFTVKDIKKEVHKAKSQL-YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62
           SG+  + D++  +HK   Q  + +RQ++RLE+KGK LKD+D V+SL L++GD V++KDLG
Sbjct: 21  SGATPIGDLRDIIHKTLKQTPHANRQSLRLELKGKSLKDTDTVESLSLRSGDKVYVKDLG 80

Query: 63  PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAQ 107
           PQIGW TVF+AEYAGPL VYLIFY+RP + YG +AAS P S    
Sbjct: 81  PQIGWKTVFLAEYAGPLIVYLIFYFRPELVYG-KAASLPISLTTH 124

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194866183|ref|XP_001971797.1| GG15168 [Drosophila erecta] gi|190653580|gb|EDV50823.1| GG15168 [Drosophila erecta]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 80/105 (76%), Gaps = 2/105 (1%)

Query: 4   SGSFTVKDIKKEVHKAKSQL-YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62
           SG+  + D++  +HK+  Q  + +RQ++RLE+KGK LKD+D V+SL L++GD V++KDLG
Sbjct: 21  SGATPIGDLRALIHKSLKQTPHANRQSLRLELKGKSLKDTDTVESLSLRSGDKVYVKDLG 80

Query: 63  PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAQ 107
           PQIGW TVF+AEYAGPL VYL+FY+RP + YG +AAS P S    
Sbjct: 81  PQIGWKTVFLAEYAGPLIVYLLFYFRPELVYG-KAASLPISLTTH 124

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291224755|ref|XP_002732370.1| PREDICTED: steroid Alpha ReducTase family member (art-1)-like [Saccoglossus kowalevskii]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 72/99 (72%)

Query: 3   VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62
           +S S TV D+K+  H+  ++ YPDRQ+ R E KG+ LKD   ++SL +KNGD ++ KDLG
Sbjct: 20  LSPSSTVADVKRIYHQRNAKYYPDRQSFRSEPKGRSLKDDATLQSLNIKNGDKLYFKDLG 79

Query: 63  PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKP 101
           PQIGW TVF+AEYAGPLFVYL+ Y RP   YG+ A  KP
Sbjct: 80  PQIGWKTVFLAEYAGPLFVYLLLYTRPACIYGAGAVDKP 118

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|195435792|ref|XP_002065863.1| GK16849 [Drosophila willistoni] gi|194161948|gb|EDW76849.1| GK16849 [Drosophila willistoni]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 78/106 (73%), Gaps = 4/106 (3%)

Query: 4   SGSFTVKDIKKEVHKAKSQLYPD--RQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
           S S T+ D++  +HK   Q  PD  RQ++RL+ +GK +KDSD ++SL L NGD V+IKDL
Sbjct: 21  SPSTTISDLRVLIHKNLKQT-PDANRQSLRLDSRGKSVKDSDTLQSLSLSNGDKVYIKDL 79

Query: 62  GPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAQ 107
           GPQIGW TVF+AEYAGPL VYL+FY+RP + YG +AASKP S    
Sbjct: 80  GPQIGWKTVFLAEYAGPLIVYLLFYFRPELIYG-QAASKPISLTTH 124

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|211938631|gb|ACJ13212.1| FI06688p [Drosophila melanogaster]

 Score =  121 bits (303), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 4   SGSFTVKDIKKEVHKAKSQL-YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62
           SG+  + D++  +HK   Q  + +RQ++RLE+KGK LKD+D ++SL L++GD +++KDLG
Sbjct: 25  SGATPIGDLRALIHKTLKQTPHANRQSLRLELKGKSLKDTDTLESLSLRSGDKIYVKDLG 84

Query: 63  PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAQ 107
           PQIGW TVF+AEYAGPL VYLIFY+RP + YG +AAS P S    
Sbjct: 85  PQIGWKTVFLAEYAGPLIVYLIFYFRPELVYG-KAASLPISLTTH 128

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
FB|FBgn0035471	306	Sc2 "Sc2" [Drosophila melanoga	0.925	0.323	0.564	4.5e-27
WB|WBGene00000198	308	art-1 [Caenorhabditis elegans	0.906	0.314	0.530	1.6e-22
UNIPROTKB|F1N8L2	308	TECR "Uncharacterized protein"	0.971	0.337	0.405	2.5e-19
ZFIN|ZDB-GENE-041010-116	349	tecrl2 "trans-2,3-enoyl-CoA re	0.850	0.260	0.489	8e-19
ZFIN|ZDB-GENE-030131-5154	308	tecrb "trans-2,3-enoyl-CoA red	0.850	0.295	0.467	1.7e-18
UNIPROTKB|Q3ZCD7	308	TECR "Very-long-chain enoyl-Co	0.869	0.301	0.462	3.6e-18
MGI|MGI:1915408	308	Tecr "trans-2,3-enoyl-CoA redu	0.869	0.301	0.462	3.6e-18
RGD|620376	308	Tecr "trans-2,3-enoyl-CoA redu	0.869	0.301	0.462	3.6e-18
UNIPROTKB|B3KSQ1	323	TECR "Very-long-chain enoyl-Co	0.813	0.269	0.482	4.6e-18
UNIPROTKB|Q9NZ01	308	TECR "Very-long-chain enoyl-Co	0.813	0.282	0.482	4.6e-18

FB|FBgn0035471 Sc2 "Sc2" [Drosophila melanogaster (taxid:7227)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 57/101 (56%), Positives = 79/101 (78%)

Query:     4 SGSFTVKDIKKEVHKAKSQL-YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62
             SG+  + D++  +HK   Q  + +RQ++RLE+KGK LKD+D ++SL L++GD +++KDLG
Sbjct:    25 SGATPIGDLRALIHKTLKQTPHANRQSLRLELKGKSLKDTDTLESLSLRSGDKIYVKDLG 84

Query:    63 PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYS 103
             PQIGW TVF+AEYAGPL VYLIFY+RP + YG +AAS P S
Sbjct:    85 PQIGWKTVFLAEYAGPLIVYLIFYFRPELVYG-KAASLPIS 124

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00000198 art-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 52/98 (53%), Positives = 67/98 (68%)

Query:     3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV-FIKDL 61
             +SGS T+K IKK + + K +L  +RQA+R+E KGK L D   +  LGL +   V +++DL
Sbjct:    23 ISGSETIKAIKKRIAQKKLKLTEERQALRVEPKGKPLADDQKLSDLGLSSQKAVLYVRDL 82

Query:    62 GPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAAS 99
             GPQI W TVFMAEYAGPLFVY +FY RP   YG  A +
Sbjct:    83 GPQIAWKTVFMAEYAGPLFVYPLFYLRPTFIYGQAAVN 120

GO:0005737 "cytoplasm" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

UNIPROTKB|F1N8L2 TECR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 43/106 (40%), Positives = 69/106 (65%)

Query:     2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
             +V  + T+++I+   HK   Q YP RQ+++L+ KGK L++ + +++L +     ++ KDL
Sbjct:    22 KVEPNATIREIRSMFHKLYPQWYPARQSIKLDPKGKSLRNEEILQNLPVGTTATLYFKDL 81

Query:    62 GPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEA--ASKPYSYV 105
             GPQIGW+TVF+ EY GPLF+Y +FY+R    YG +    S P+  V
Sbjct:    82 GPQIGWTTVFLIEYTGPLFIYFLFYFRMPFVYGLDERFTSSPHPVV 127

GO:0005737 "cytoplasm" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-041010-116 tecrl2 "trans-2,3-enoyl-CoA reductase-like 2" [Danio rerio (taxid:7955)]

 Score = 227 (85.0 bits), Expect = 8.0e-19, P = 8.0e-19
 Identities = 45/92 (48%), Positives = 63/92 (68%)

Query:     2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
             +V  S T+ +IK   HK   +LYP RQA++L  +GK L D D ++ L +     +F +DL
Sbjct:    63 KVVPSATIAEIKGLFHKTYPKLYPSRQALKLHPEGKALNDEDVLEDLPVGTTATMFFQDL 122

Query:    62 GPQIGWSTVFMAEYAGPLFVYLIFYYR-PWIF 92
             GPQIGW+ VF+AE  GPLFVYL+FY+R P+I+
Sbjct:   123 GPQIGWTMVFLAECLGPLFVYLLFYFRLPYIY 154

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-5154 tecrb "trans-2,3-enoyl-CoA reductase b" [Danio rerio (taxid:7955)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 43/92 (46%), Positives = 62/92 (67%)

Query:     2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
             +V  + T+ +IK   HK+  Q YP RQ++RL+ KGK LKD D ++ L +      + +DL
Sbjct:    22 KVEPNATIGEIKSMFHKSHPQWYPARQSIRLDPKGKSLKDEDVLQHLPVGTTATFYFRDL 81

Query:    62 GPQIGWSTVFMAEYAGPLFVYLIFYYR-PWIF 92
             G QI W TVF+ EYAGPL +YL+FY+R P+I+
Sbjct:    82 GAQISWVTVFLTEYAGPLLIYLMFYFRVPFIY 113

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q3ZCD7 TECR "Very-long-chain enoyl-CoA reductase" [Bos taurus (taxid:9913)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 43/93 (46%), Positives = 59/93 (63%)

Query:     2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
             +V    T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DL
Sbjct:    22 KVEPQATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL 81

Query:    62 GPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYG 94
             G QI W TVF+ EYAGPLF+YL+FY+R    YG
Sbjct:    82 GAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYG 114

GO:0030497 "fatty acid elongation" evidence=ISS

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

MGI|MGI:1915408 Tecr "trans-2,3-enoyl-CoA reductase" [Mus musculus (taxid:10090)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 43/93 (46%), Positives = 59/93 (63%)

Query:     2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
             +V    T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DL
Sbjct:    22 KVEPQATISEIKTLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL 81

Query:    62 GPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYG 94
             G QI W TVF+ EYAGPLF+YL+FY+R    YG
Sbjct:    82 GAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYG 114

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO

GO:0030497 "fatty acid elongation" evidence=ISO

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|620376 Tecr "trans-2,3-enoyl-CoA reductase" [Rattus norvegicus (taxid:10116)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 43/93 (46%), Positives = 59/93 (63%)

Query:     2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
             +V    T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DL
Sbjct:    22 KVEPQATISEIKTLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL 81

Query:    62 GPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYG 94
             G QI W TVF+ EYAGPLF+YL+FY+R    YG
Sbjct:    82 GAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYG 114

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO;ISS

GO:0030497 "fatty acid elongation" evidence=ISO;ISS

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=ISO;ISS

UNIPROTKB|B3KSQ1 TECR "Very-long-chain enoyl-CoA reductase" [Homo sapiens (taxid:9606)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 42/87 (48%), Positives = 57/87 (65%)

Query:     8 TVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGW 67
             T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DLG QI W
Sbjct:    43 TIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDLGAQISW 102

Query:    68 STVFMAEYAGPLFVYLIFYYRPWIFYG 94
              TVF+ EYAGPLF+YL+FY+R    YG
Sbjct:   103 VTVFLTEYAGPLFIYLLFYFRVPFIYG 129

GO:0005737 "cytoplasm" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9NZ01 TECR "Very-long-chain enoyl-CoA reductase" [Homo sapiens (taxid:9606)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 42/87 (48%), Positives = 57/87 (65%)

Query:     8 TVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGW 67
             T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DLG QI W
Sbjct:    28 TIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDLGAQISW 87

Query:    68 STVFMAEYAGPLFVYLIFYYRPWIFYG 94
              TVF+ EYAGPLF+YL+FY+R    YG
Sbjct:    88 VTVFLTEYAGPLFIYLLFYFRVPFIYG 114

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=IDA

GO:0030497 "fatty acid elongation" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0019432 "triglyceride biosynthetic process" evidence=TAS

GO:0035338 "long-chain fatty-acyl-CoA biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9N5Y2	TECR_CAEEL	1, ., 3, ., 1, ., 9, 3	0.5306	0.9065	0.3149	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	107
PLN02560	308	PLN02560, PLN02560, enoyl-CoA reductase	4e-24
cd01801	77	cd01801, Tsc13_N, Ubiquitin-like domain of Tsc13	3e-16
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	1e-06
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-04
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	9e-04
smart00213	72	smart00213, UBQ, Ubiquitin homologues	0.002
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	0.002
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	0.004
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	0.004

>gnl|CDD|178174 PLN02560, PLN02560, enoyl-CoA reductase

 Score = 92.9 bits (231), Expect = 4e-24
 Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 5/97 (5%)

Query: 1   MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRL-----EIKGKILKDSDDVKSLGLKNGDM 55
           +EV  S TV D+KK +HK K + YP RQ + L     + +  +L DS  +K  GL +G  
Sbjct: 18  LEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGT 77

Query: 56  VFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIF 92
           V  KDLGPQ+ + T+F  EY GPL +Y +FY+ P ++
Sbjct: 78  VVFKDLGPQVSYRTLFFFEYLGPLLIYPLFYFFPQVY 114

Length = 308

>gnl|CDD|176396 cd01801, Tsc13_N, Ubiquitin-like domain of Tsc13

 Score = 66.7 bits (163), Expect = 3e-16
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 4  SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
          SG  T+ D+KK + K+  QL  +RQ++RLE KGK LKD D +  LG+  G  ++++DL
Sbjct: 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYVRDL 77

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions. Length = 77

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 41.9 bits (99), Expect = 1e-06
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
          EVS   TV ++K ++   K  + P++Q  RL   GKILKD   +   G+++G  + +   
Sbjct: 13 EVSPDDTVAELKAKIAA-KEGVPPEQQ--RLIYAGKILKDDKTLSDYGIQDGSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYP-DRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58
          EV    TV ++K+++ + K   YP ++Q  +L   GKILKD   ++   +   D V +
Sbjct: 16 EVDPDDTVAELKEKIEEEKGCDYPPEQQ--KLIYSGKILKDDTTLEEYKIDEKDFVVV 71

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 34.8 bits (80), Expect = 9e-04
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58
           V    TV D+K+++ K K  L P++Q  RL + GKIL DS  ++  GL++GD + +
Sbjct: 13 LVPSGTTVADLKEKLAK-KLGLPPEQQ--RLLVNGKILPDSLTLEDYGLQDGDELVL 66

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
          EV  S TV ++K+++ +    + P++Q  RL  KGK+L+D   +   G+++G 
Sbjct: 16 EVKPSDTVSELKEKIAELT-GIPPEQQ--RLIYKGKVLEDDRTLADYGIQDGS 65

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 33.7 bits (78), Expect = 0.002
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 1  MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF 57
          +EV  S TV ++K+++   K  +  D+Q  RL   GK+L+D   +   G+++G  + 
Sbjct: 10 LEVDPSDTVSELKEKIED-KEGIPVDQQ--RLIFSGKVLEDDTTLSEYGIQDGSTLH 63

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 32.9 bits (76), Expect = 0.004
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 1  MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
          ++V  + T+  +     K +    P  Q VRL   G+ L  +D V    +++GD +
Sbjct: 15 IKVKPTTTLSKLINAYRKKRGI--PADQQVRLIFDGERLDPNDTVADYDIEDGDTI 68

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 33.1 bits (76), Expect = 0.004
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 1  MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58
          + +S   T  D+KK +    + + P  Q  +L  KGK   D++ +   G+K+G  V +
Sbjct: 14 LSISSQATFGDLKKML-APVTGVEPRDQ--KLIFKGKERDDAETLDMSGVKDGSKVML 68

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
PLN02560	308	enoyl-CoA reductase	100.0
KOG1639|consensus	297		100.0
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	99.69
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.67
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.63
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.62
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.59
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.58
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.58
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.58
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.57
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.57
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.56
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.55
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.54
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.53
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.51
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.51
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.5
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.5
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.5
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.5
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.49
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.48
PTZ00044	76	ubiquitin; Provisional	99.48
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.47
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.39
KOG0005|consensus	70		99.38
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.36
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.32
KOG0004|consensus	156		99.31
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.28
KOG0003|consensus	128		99.24
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.23
KOG0010|consensus	493		99.2
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.17
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.16
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.15
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	99.09
KOG0011|consensus	340		98.76
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	98.69
KOG0001|consensus	75		98.58
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.45
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.37
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.35
KOG4248|consensus	1143		98.12
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	97.91
KOG4495|consensus	110		97.65
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	97.43
KOG3493|consensus	73		97.39
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	97.33
KOG1872|consensus	473		97.31
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.28
KOG0006|consensus	446		97.18
KOG3206|consensus	234		96.4
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	96.04
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	95.57
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	95.44
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	95.37
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	95.05
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	94.89
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	94.58
KOG1769|consensus	99		94.37
KOG0013|consensus	231		94.31
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	93.77
PF08825	84	E2_bind: E2 binding domain; InterPro: IPR014929 E1	91.94
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	90.75
PF14732	87	UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquiti	89.97
PF10209	122	DUF2340: Uncharacterized conserved protein (DUF234	89.92
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	89.89
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	88.38
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	88.0
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	87.95
PF13019	162	Telomere_Sde2: Telomere stability and silencing	87.31
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	87.1
PF10790	76	DUF2604: Protein of Unknown function (DUF2604); In	86.89
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	85.33
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	84.84
COG5417	81	Uncharacterized small protein [Function unknown]	83.22
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	81.02
PRK00753	39	psbL photosystem II reaction center L; Provisional	80.67
TIGR02958	452	sec_mycoba_snm4 secretion protein snm4. Members of	80.05

>PLN02560 enoyl-CoA reductase

Probab=100.00  E-value=3e-39  Score=250.68  Aligned_cols=92  Identities=45%  Similarity=0.839  Sum_probs=84.4

Q ss_pred             CcccCCCcHHHHHHHHHhHhCC-CCccceeEEec-----cCCeecCCcchhhhcCCCCCceEEEeccCCcchhhhhhhhh
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQ-LYPDRQAVRLE-----IKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTVFMAE   74 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~-i~~~rQrL~l~-----~~Gk~L~D~ktL~~~gi~~g~tL~vKDlGpQi~wrtVf~~E   74 (107)
                      ||+++++||+|||++|+++ .+ ++++||||++.     .+|+.|+|+++|+++|+++|++|+||||||||||||||++|
T Consensus        18 lev~~~aTV~dLK~~Isk~-~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~kDLGpQi~wrtVF~~E   96 (308)
T PLN02560         18 LEVPDSATVADLKKAIHKR-KKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFKDLGPQVSYRTLFFFE   96 (308)
T ss_pred             EEcCCCCcHHHHHHHHHHH-cCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEEeCCCcCchhhhHHHH
Confidence            4789999999999999994 55 58999999964     23558999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhcccccc
Q psy12731         75 YAGPLFVYLIFYYRPWIFYG   94 (107)
Q Consensus        75 Y~GPl~i~~lf~~~~~~iy~   94 (107)
                      |+|||+||++||++++ ||+
T Consensus        97 Y~GPl~i~~l~y~~~~-~y~  115 (308)
T PLN02560         97 YLGPLLIYPLFYFFPQ-VYK  115 (308)
T ss_pred             hhhHHHHHHHHHHhhh-hhc
Confidence            9999999999999999 997

>KOG1639|consensus

Probab=100.00  E-value=1.7e-34  Score=217.57  Aligned_cols=103  Identities=43%  Similarity=0.799  Sum_probs=90.9

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCcccee--EEeccCCeecCCcchhhhcCCCCCceEEEeccCCcchhhhhhhhhhhhhH
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQA--VRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPL   79 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQr--L~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlGpQi~wrtVf~~EY~GPl   79 (107)
                      +.+.+.|++|++++|+++..++.+.|+|  |+.+.+||+|.|+.+|+++|+.+|.|++||||||||||||||++||+|||
T Consensus        18 ~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vKDLGpQI~wrtvF~~EYlGPL   97 (297)
T KOG1639|consen   18 DLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVKDLGPQISWRTVFFAEYLGPL   97 (297)
T ss_pred             cCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEeccCCccchhhhhHHHhhchH
Confidence            4578899999999888866778885554  55667899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccCCCCCCCCCCcCC
Q psy12731         80 FVYLIFYYRPWIFYGSEAASKPYSYVAQ  107 (107)
Q Consensus        80 ~i~~lf~~~~~~iy~~~~~~~~~~~~~~  107 (107)
                      ++|++||+++..+||..+.   +|++|+
T Consensus        98 lvy~~Fy~~p~~vyg~~~~---i~~~~~  122 (297)
T KOG1639|consen   98 LVYPLFYYRPTLVYGKDAV---IHPLQR  122 (297)
T ss_pred             HhHhHHHhchheeechhhc---cCHHHH
Confidence            9999999999999998753   777663

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=99.69  E-value=6.1e-17  Score=102.59  Aligned_cols=58  Identities=45%  Similarity=0.705  Sum_probs=53.9

Q ss_pred             cCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEecc
Q psy12731          4 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL   61 (107)
Q Consensus         4 ~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDl   61 (107)
                      ++++||++||++|+++...++++||||+++++|+.|+|+++|+++|+++|++||||||
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyvKDL   77 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYVRDL   77 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEEeeC
Confidence            5889999999999995456789999999889999999999999999999999999998

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.67  E-value=6.3e-17  Score=102.17  Aligned_cols=55  Identities=16%  Similarity=0.239  Sum_probs=51.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++++|++||++||++|++ ..+++++||||+  ++|+.|+|++||++||+++|++||+
T Consensus        16 ~~v~~~~TV~~LK~~I~~-~~~~~~~~qrLi--~~Gk~L~D~~tL~~ygi~~~stv~l   70 (73)
T cd01791          16 VKCNPDDTIGDLKKLIAA-QTGTRPEKIVLK--KWYTIFKDHISLGDYEIHDGMNLEL   70 (73)
T ss_pred             EEeCCCCcHHHHHHHHHH-HhCCChHHEEEE--eCCcCCCCCCCHHHcCCCCCCEEEE
Confidence            378999999999999999 579999999998  8899999999999999999999986

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.63  E-value=3.7e-16  Score=98.00  Aligned_cols=55  Identities=25%  Similarity=0.312  Sum_probs=51.8

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||+++|++|++ ..|+|+++|||+  ++|+.|+|++||++||+++++||++
T Consensus        13 l~v~~~~tV~~lK~~i~~-~~gip~~~q~Li--~~Gk~L~D~~tL~~~~i~~~~tl~l   67 (74)
T cd01793          13 LEVTGQETVSDIKAHVAG-LEGIDVEDQVLL--LAGVPLEDDATLGQCGVEELCTLEV   67 (74)
T ss_pred             EEECCcCcHHHHHHHHHh-hhCCCHHHEEEE--ECCeECCCCCCHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999999874

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.62  E-value=6.2e-16  Score=96.75  Aligned_cols=55  Identities=24%  Similarity=0.313  Sum_probs=52.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||+++|++|++ .+|+++++|||+  |+|+.|+|+++|++||++++++||+
T Consensus        13 l~v~~~~TV~~lK~~I~~-~~gi~~~~q~Li--~~G~~L~D~~~l~~~~i~~~~tv~~   67 (70)
T cd01794          13 LSVSSKDTVGQLKKQLQA-AEGVDPCCQRWF--FSGKLLTDKTRLQETKIQKDYVVQV   67 (70)
T ss_pred             EEECCcChHHHHHHHHHH-HhCCCHHHeEEE--ECCeECCCCCCHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999999986

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.59  E-value=1.9e-15  Score=96.25  Aligned_cols=56  Identities=23%  Similarity=0.310  Sum_probs=51.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF   57 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~   57 (107)
                      +++++++||++||++|++ ..+++++||||...++|+.|+|+++|++||+++|++|+
T Consensus        17 ~~v~~~~TV~~lK~~I~~-~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~   72 (80)
T cd01792          17 VSLRDSMTVSELKQQIAQ-KIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVL   72 (80)
T ss_pred             EEcCCCCcHHHHHHHHHH-HhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEE
Confidence            367899999999999999 57999999999555899999999999999999999886

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.58  E-value=2e-15  Score=95.98  Aligned_cols=54  Identities=22%  Similarity=0.381  Sum_probs=50.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..+++++||||+  ++|+.|+|+ +|++||+++|++|++
T Consensus        16 l~v~~~~TV~~LK~~I~~-~~~~~~~~qrL~--~~Gk~L~d~-~L~~~gi~~~~~i~l   69 (78)
T cd01804          16 LSVPPDETVEGLKKRISQ-RLKVPKERLALL--HRETRLSSG-KLQDLGLGDGSKLTL   69 (78)
T ss_pred             EEECCcCHHHHHHHHHHH-HhCCChHHEEEE--ECCcCCCCC-cHHHcCCCCCCEEEE
Confidence            478999999999999999 579999999998  999999998 999999999999985

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.58  E-value=2.2e-15  Score=94.47  Aligned_cols=55  Identities=27%  Similarity=0.451  Sum_probs=51.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..|+|+++|+|.  ++|+.|+|+++|++||++++++|++
T Consensus        13 l~v~~~~tV~~lK~~I~~-~~gi~~~~q~L~--~~G~~L~D~~tL~~~~i~~~~tl~l   67 (74)
T cd01810          13 YEVQLTQTVATLKQQVSQ-RERVQADQFWLS--FEGRPMEDEHPLGEYGLKPGCTVFM   67 (74)
T ss_pred             EEECCcChHHHHHHHHHH-HhCCCHHHeEEE--ECCEECCCCCCHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999999864

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.58  E-value=2.4e-15  Score=94.24  Aligned_cols=55  Identities=22%  Similarity=0.308  Sum_probs=51.9

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ ..|+++++|||.  ++|+.|+|+.+|++|||+++++|++
T Consensus        15 l~v~~~~tV~~lK~~i~~-~~gi~~~~q~L~--~~G~~L~d~~~L~~~~i~~~~~l~l   69 (74)
T cd01807          15 LQVSEKESVSTLKKLVSE-HLNVPEEQQRLL--FKGKALADDKRLSDYSIGPNAKLNL   69 (74)
T ss_pred             EEECCCCcHHHHHHHHHH-HHCCCHHHeEEE--ECCEECCCCCCHHHCCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999999975

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.57  E-value=3e-15  Score=93.09  Aligned_cols=55  Identities=33%  Similarity=0.503  Sum_probs=51.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..++++++|||.  ++|+.|+|+++|++||+++|++|++
T Consensus        14 l~v~~~~TV~~lK~~I~~-~~~i~~~~~~Li--~~Gk~L~d~~tL~~~~i~~~stl~l   68 (71)
T cd01808          14 IEIAEDASVKDFKEAVSK-KFKANQEQLVLI--FAGKILKDTDTLTQHNIKDGLTVHL   68 (71)
T ss_pred             EEECCCChHHHHHHHHHH-HhCCCHHHEEEE--ECCeEcCCCCcHHHcCCCCCCEEEE
Confidence            478899999999999999 579999999988  9999999999999999999999975

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.57  E-value=3.3e-15  Score=92.58  Aligned_cols=55  Identities=24%  Similarity=0.397  Sum_probs=51.9

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||+++|++|++ ..|+++++|+|+  ++|+.|+|+.+|++||+++|++||+
T Consensus        13 ~~v~~~~tV~~lK~~i~~-~~gi~~~~q~Li--~~G~~L~d~~~l~~~~i~~~stl~l   67 (70)
T cd01798          13 VEVDPDTDIKQLKEVVAK-RQGVPPDQLRVI--FAGKELRNTTTIQECDLGQQSILHA   67 (70)
T ss_pred             EEECCCChHHHHHHHHHH-HHCCCHHHeEEE--ECCeECCCCCcHHHcCCCCCCEEEE
Confidence            468899999999999999 689999999998  9999999999999999999999985

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.56  E-value=5.1e-15  Score=92.49  Aligned_cols=56  Identities=21%  Similarity=0.413  Sum_probs=52.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCc-chhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~-ktL~~~gi~~g~tL~vK   59 (107)
                      +++++++||++||++|++ ..|+|+++|||+  ++|+.|+|+ .+|++||+++|++|+++
T Consensus        14 l~v~~~~TV~~lK~~I~~-~~gip~~~q~Li--~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796          14 LDVDPDLELENFKALCEA-ESGIPASQQQLI--YNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             EEECCcCCHHHHHHHHHH-HhCCCHHHeEEE--ECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            478999999999999999 689999999998  999999987 68999999999999985

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.55  E-value=8.1e-15  Score=93.25  Aligned_cols=53  Identities=23%  Similarity=0.427  Sum_probs=47.3

Q ss_pred             cCCCcHHHHHHHHHhHh-CCC-CccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          4 SGSFTVKDIKKEVHKAK-SQL-YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         4 ~~~~TV~~LK~~I~~~~-~~i-~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +.++||++||++|+++. +++ ++++|||+  |+||.|+|++||++|||++|++||+
T Consensus        18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLI--y~GKiL~D~~TL~dygI~~gstlhL   72 (75)
T cd01815          18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLI--HCGRKLKDDQTLDFYGIQSGSTIHI   72 (75)
T ss_pred             CccCcHHHHHHHHHHhhccCCCChHHeEEE--eCCcCCCCCCcHHHcCCCCCCEEEE
Confidence            46889999999999943 456 59999999  9999999999999999999999985

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.54  E-value=9.9e-15  Score=93.02  Aligned_cols=53  Identities=15%  Similarity=0.320  Sum_probs=50.3

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++||.+||++|++ ..|+++++|||+  ++||.|+|+.+|++||+++|++|++
T Consensus        19 v~~~~TV~~lK~~i~~-~~gi~~~~QrLi--~~Gk~L~D~~tL~~y~i~~~~~i~l   71 (78)
T cd01797          19 LSRLTKVEELREKIQE-LFNVEPECQRLF--YRGKQMEDGHTLFDYNVGLNDIIQL   71 (78)
T ss_pred             cCCcCcHHHHHHHHHH-HhCCCHHHeEEE--eCCEECCCCCCHHHcCCCCCCEEEE
Confidence            6889999999999999 689999999998  9999999999999999999999974

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.53  E-value=1.2e-14  Score=97.15  Aligned_cols=55  Identities=16%  Similarity=0.167  Sum_probs=51.9

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||.+||++|++ ..|+++++|||+  ++|+.|+|+++|++|||+++++|++
T Consensus        42 leV~~~~TV~~lK~kI~~-~~gip~~~QrLi--~~Gk~L~D~~tL~dy~I~~~stL~l   96 (103)
T cd01802          42 LRVSPFETVISVKAKIQR-LEGIPVAQQHLI--WNNMELEDEYCLNDYNISEGCTLKL   96 (103)
T ss_pred             EEeCCCCcHHHHHHHHHH-HhCCChHHEEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999999874

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.51  E-value=2.3e-14  Score=89.71  Aligned_cols=55  Identities=27%  Similarity=0.477  Sum_probs=51.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCC--CccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQL--YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i--~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..++  ++++|||.  ++|+.|+|+++|++||+++|++|++
T Consensus        15 l~v~~~~TV~~lK~~i~~-~~~i~~~~~~q~L~--~~G~~L~d~~~L~~~~i~~~~~i~~   71 (77)
T cd01805          15 IEVDPDDTVAELKEKIEE-EKGCDYPPEQQKLI--YSGKILKDDTTLEEYKIDEKDFVVV   71 (77)
T ss_pred             EEECCCCcHHHHHHHHHH-hhCCCCChhHeEEE--ECCEEccCCCCHHHcCCCCCCEEEE
Confidence            478899999999999999 5888  99999998  8999999999999999999998874

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.51  E-value=2.2e-14  Score=87.97  Aligned_cols=55  Identities=27%  Similarity=0.538  Sum_probs=51.6

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||.+||++|++ ..++++++|+|.  ++|+.|+|++||++||+++|++|++
T Consensus        10 ~~v~~~~tV~~lK~~i~~-~~~~~~~~~~L~--~~G~~L~d~~tL~~~~i~~~~~I~l   64 (69)
T PF00240_consen   10 LEVDPDDTVADLKQKIAE-ETGIPPEQQRLI--YNGKELDDDKTLSDYGIKDGSTIHL   64 (69)
T ss_dssp             EEEETTSBHHHHHHHHHH-HHTSTGGGEEEE--ETTEEESTTSBTGGGTTSTTEEEEE
T ss_pred             EEECCCCCHHHhhhhccc-ccccccccceee--eeeecccCcCcHHHcCCCCCCEEEE
Confidence            478999999999999999 588999999998  9999999999999999999999875

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.50  E-value=2.4e-14  Score=91.90  Aligned_cols=56  Identities=18%  Similarity=0.252  Sum_probs=49.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhC-CCCccceeEEeccCCeecCCcchhhhcC--CCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKS-QLYPDRQAVRLEIKGKILKDSDDVKSLG--LKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~-~i~~~rQrL~l~~~Gk~L~D~ktL~~~g--i~~g~tL~v   58 (107)
                      +++++++||++||++|++..+ ..++++|||+  |+||.|+|++||++|+  +.+|.|||+
T Consensus        18 ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLI--y~GKiLkD~~tL~~~~~~~~~~~tiHL   76 (79)
T cd01790          18 VSCFLNWTVGELKTHLSRVYPSKPLEQDQRLI--YSGKLLPDHLKLRDVLRKQDEYHMVHL   76 (79)
T ss_pred             EecCCcChHHHHHHHHHHhcCCCCChhHeEEE--EcCeeccchhhHHHHhhcccCCceEEE
Confidence            356899999999999998543 3568999999  9999999999999996  999999986

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.50  E-value=2.6e-14  Score=90.15  Aligned_cols=55  Identities=22%  Similarity=0.408  Sum_probs=51.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..|+|+++|+|.  ++|+.|+|+++|++||+++|++|++
T Consensus        12 l~v~~~~TV~~lK~~i~~-~~gip~~~q~L~--~~G~~L~d~~tL~~~~i~~g~~l~v   66 (76)
T cd01800          12 FTLQLSDPVSVLKVKIHE-ETGMPAGKQKLQ--YEGIFIKDSNSLAYYNLANGTIIHL   66 (76)
T ss_pred             EEECCCCcHHHHHHHHHH-HHCCCHHHEEEE--ECCEEcCCCCcHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999998864

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.50  E-value=2.7e-14  Score=87.95  Aligned_cols=55  Identities=27%  Similarity=0.433  Sum_probs=51.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..|+++++|||.  ++|+.|.|+++|++||+++|++|++
T Consensus        14 i~v~~~~tv~~lK~~i~~-~~gi~~~~q~L~--~~g~~l~d~~~L~~~~i~~g~~l~v   68 (71)
T cd01812          14 LSISSQATFGDLKKMLAP-VTGVEPRDQKLI--FKGKERDDAETLDMSGVKDGSKVML   68 (71)
T ss_pred             EEECCCCcHHHHHHHHHH-hhCCChHHeEEe--eCCcccCccCcHHHcCCCCCCEEEE
Confidence            468899999999999999 689999999998  8999999999999999999999986

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01803 Ubiquitin Ubiquitin

Probab=99.50  E-value=3.4e-14  Score=88.28  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=51.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..++++++|||.  ++|+.|+|+++|++||+++|++|++
T Consensus        15 ~~v~~~~tV~~lK~~i~~-~~g~~~~~q~L~--~~g~~L~d~~~L~~~~i~~~~~i~l   69 (76)
T cd01803          15 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL   69 (76)
T ss_pred             EEECCcCcHHHHHHHHHH-HhCCCHHHeEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence            478899999999999999 689999999998  8999999999999999999998874

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.49  E-value=5e-14  Score=87.54  Aligned_cols=55  Identities=22%  Similarity=0.427  Sum_probs=51.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..++++++|||.  ++|+.|+|+++|++||+++|++|++
T Consensus        15 ~~v~~~~tv~~lK~~i~~-~~g~~~~~qrL~--~~g~~L~d~~tl~~~~i~~g~~i~l   69 (76)
T cd01806          15 IDIEPTDKVERIKERVEE-KEGIPPQQQRLI--YSGKQMNDDKTAADYKLEGGSVLHL   69 (76)
T ss_pred             EEECCCCCHHHHHHHHhH-hhCCChhhEEEE--ECCeEccCCCCHHHcCCCCCCEEEE
Confidence            468899999999999999 589999999998  9999999999999999999998874

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.48  E-value=4.5e-14  Score=89.17  Aligned_cols=57  Identities=25%  Similarity=0.360  Sum_probs=51.6

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEe-ccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRL-EIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l-~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      |+|++++||++||++|++ ..++|++||+|.. .++|+.|+|+.+|++||+++|++|++
T Consensus        14 v~v~~~~Tv~~lK~~i~~-~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~l   71 (74)
T cd01813          14 VTTLSEDTVLDLKQFIKT-LTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMM   71 (74)
T ss_pred             EEECCCCCHHHHHHHHHH-HHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEE
Confidence            578999999999999999 6899999999982 13899999999999999999999876

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>PTZ00044 ubiquitin; Provisional

Probab=99.48  E-value=4.8e-14  Score=88.20  Aligned_cols=55  Identities=15%  Similarity=0.244  Sum_probs=51.4

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..|+|+++|||.  ++|+.|+|+++|++||++++++|++
T Consensus        15 l~v~~~~tv~~lK~~i~~-~~gi~~~~q~L~--~~g~~L~d~~~l~~~~i~~~~~i~l   69 (76)
T PTZ00044         15 FNFEPDNTVQQVKMALQE-KEGIDVKQIRLI--YSGKQMSDDLKLSDYKVVPGSTIHM   69 (76)
T ss_pred             EEECCCCcHHHHHHHHHH-HHCCCHHHeEEE--ECCEEccCCCcHHHcCCCCCCEEEE
Confidence            468899999999999999 689999999998  9999999999999999999998874

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.47  E-value=6.6e-14  Score=86.18  Aligned_cols=56  Identities=20%  Similarity=0.431  Sum_probs=51.7

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      +++++++||.+||++|++ ..|+++++|+|.  ++|+.|+|+++|++||+++|++|++-
T Consensus        15 ~~v~~~~tv~~lK~~i~~-~~gi~~~~q~L~--~~g~~L~d~~~L~~~~i~~~~~l~l~   70 (72)
T cd01809          15 FTVEEEITVLDLKEKIAE-EVGIPVEQQRLI--YSGRVLKDDETLSEYKVEDGHTIHLV   70 (72)
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcCHHHeEEE--ECCEECCCcCcHHHCCCCCCCEEEEE
Confidence            367899999999999999 689999999998  89999999999999999999999863

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.39  E-value=4.1e-13  Score=85.10  Aligned_cols=54  Identities=30%  Similarity=0.474  Sum_probs=48.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC-CcchhhhcCCC-CCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDVKSLGLK-NGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~-D~ktL~~~gi~-~g~tL~v   58 (107)
                      +++++++||++||++|++ +.|+|+++|||   ++|+.|. |+++|++||++ +|+++|+
T Consensus        17 l~v~~~~TV~~lK~kI~~-~~gip~~~QrL---~~G~~L~dD~~tL~~ygi~~~g~~~~l   72 (75)
T cd01799          17 LTVRPDMTVAQLKDKVFL-DYGFPPAVQRW---VIGQRLARDQETLYSHGIRTNGDSAFL   72 (75)
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcCHHHEEE---EcCCeeCCCcCCHHHcCCCCCCCEEEE
Confidence            478999999999999999 69999999998   6788885 77899999999 7898875

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>KOG0005|consensus

Probab=99.38  E-value=2.7e-13  Score=82.88  Aligned_cols=55  Identities=22%  Similarity=0.408  Sum_probs=52.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++++|+++|+.+|+.+++ ++|+||.+|||+  |.||++.|++|-++|++..|+.||+
T Consensus        15 idIep~DkverIKErvEE-keGIPp~qqrli--~~gkqm~DD~tA~~Y~~~~GSVlHl   69 (70)
T KOG0005|consen   15 IDIEPTDKVERIKERVEE-KEGIPPQQQRLI--YAGKQMNDDKTAAHYNLLGGSVLHL   69 (70)
T ss_pred             EeeCcchHHHHHHHHhhh-hcCCCchhhhhh--hccccccccccHHHhhhccceeEee
Confidence            478999999999999999 799999999998  9999999999999999999999885

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.36  E-value=1.3e-12  Score=78.99  Aligned_cols=58  Identities=29%  Similarity=0.472  Sum_probs=53.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEecc
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL   61 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDl   61 (107)
                      +++++++||++||++|++ ..++++++|+|.  ++|+.|+|+.+|++|+++++++|+++++
T Consensus        12 ~~~~~~~ti~~lK~~i~~-~~~~~~~~~~l~--~~g~~l~d~~~l~~~~v~~~~~i~v~~~   69 (69)
T cd01769          12 LEVSPDDTVAELKAKIAA-KEGVPPEQQRLI--YAGKILKDDKTLSDYGIQDGSTLHLVLR   69 (69)
T ss_pred             EEECCCChHHHHHHHHHH-HHCcChHHEEEE--ECCcCCCCcCCHHHCCCCCCCEEEEEEC
Confidence            357889999999999999 578999999997  8999999999999999999999999864

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>smart00213 UBQ Ubiquitin homologues

Probab=99.32  E-value=1.7e-12  Score=77.54  Aligned_cols=51  Identities=25%  Similarity=0.458  Sum_probs=47.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCc
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD   54 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~   54 (107)
                      +++++++||++||++|++ ..++++++|+|.  ++|+.|+|+++|++||+++|+
T Consensus        14 ~~v~~~~tv~~lk~~i~~-~~~~~~~~~~L~--~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213       14 LEVKPSDTVSELKEKIAE-LTGIPVEQQRLI--YKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             EEECCCCcHHHHHHHHHH-HHCCCHHHEEEE--ECCEECCCCCCHHHcCCcCCC
Confidence            468899999999999999 689999999998  889999999999999999875

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>KOG0004|consensus

Probab=99.31  E-value=9.2e-13  Score=93.53  Aligned_cols=55  Identities=22%  Similarity=0.452  Sum_probs=51.8

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      .|+++++||.++|++|++ +++||+++|||+  +.|++|+|.+||+||+|+..+|||+
T Consensus        15 ~eve~~~ti~~~Kakiq~-~egIp~dqqrli--fag~qLedgrtlSDY~Iqkestl~l   69 (156)
T KOG0004|consen   15 LEVEANDTIDNVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL   69 (156)
T ss_pred             eeecccccHHHHHHhhhc-ccCCCchhhhhh--hhhcccccCCccccccccccceEEE
Confidence            378999999999999999 799999999998  9999999999999999999999874

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.28  E-value=6.2e-12  Score=83.88  Aligned_cols=56  Identities=29%  Similarity=0.459  Sum_probs=50.7

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC-CcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~-D~ktL~~~gi~~g~tL~vK   59 (107)
                      ++|++++||.+||.+|+. +.+++|++|+|.  ++|+.|. |++||++|||.+|+.|+++
T Consensus        19 L~V~~~~TVg~LK~lImQ-~f~V~P~dQkL~--~dG~~L~DDsrTLssyGv~sgSvl~Ll   75 (107)
T cd01795          19 LLVSANQTLKELKIQIMH-AFSVAPFDQNLS--IDGKILSDDCATLGTLGVIPESVILLK   75 (107)
T ss_pred             EEeCccccHHHHHHHHHH-HhcCCcccceee--ecCceeccCCccHHhcCCCCCCEEEEE
Confidence            478999999999999999 689999999998  6699995 6789999999999998865

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>KOG0003|consensus

Probab=99.24  E-value=6.4e-13  Score=89.74  Aligned_cols=63  Identities=24%  Similarity=0.403  Sum_probs=56.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE--EeccCCcch
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF--IKDLGPQIG   66 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~--vKDlGpQi~   66 (107)
                      ++++|++||+++|++|.. ++|+|+++|+|+  ++|++|+|..|+++||++..+||+  .|=+|--|+
T Consensus        15 le~EpS~ti~~vKA~i~~-~~Gi~~~~~~L~--~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~i~   79 (128)
T KOG0003|consen   15 LEVEPSDTIDNVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIE   79 (128)
T ss_pred             EEecccchHHHHHHHhcc-ccCCCHHHHHHH--hcccccccCCcccccCccchhhhhhhHHHhcCCCC
Confidence            578999999999999999 799999999988  999999999999999999988764  666676554

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.23  E-value=9.5e-12  Score=84.46  Aligned_cols=54  Identities=19%  Similarity=0.099  Sum_probs=45.9

Q ss_pred             ccCCCcHHHHHHHHHhHh----CC--CCccceeEEeccCCeecCCcchhhhcC------CCCCceEEE
Q psy12731          3 VSGSFTVKDIKKEVHKAK----SQ--LYPDRQAVRLEIKGKILKDSDDVKSLG------LKNGDMVFI   58 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~----~~--i~~~rQrL~l~~~Gk~L~D~ktL~~~g------i~~g~tL~v   58 (107)
                      +++++||++||++|++..    ++  .++++|||+  |+||.|+|++||++|+      +...+|+|+
T Consensus        22 ~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLI--ysGKiLeD~~TL~d~~~p~g~~~~~~~TmHv   87 (113)
T cd01814          22 YPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLI--SAGKILENSKTVGECRSPVGDIAGGVITMHV   87 (113)
T ss_pred             cChhhHHHHHHHHHHHhcccccccCCCCHHHeEEE--eCCeecCCCCcHHHhCCcccccCCCceEEEE
Confidence            578999999999999533    33  449999999  9999999999999999      666778775

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>KOG0010|consensus

Probab=99.20  E-value=1.4e-11  Score=100.49  Aligned_cols=55  Identities=27%  Similarity=0.506  Sum_probs=51.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +.|..++||++||++|++ ..+++++||+|+  |.||+|||++||..|||+||.|||+
T Consensus        29 ~~V~~~ssV~qlKE~I~~-~f~a~~dqlvLI--faGrILKD~dTL~~~gI~Dg~TvHL   83 (493)
T KOG0010|consen   29 VNVASDSSVLQLKELIAQ-RFGAPPDQLVLI--YAGRILKDDDTLKQYGIQDGHTVHL   83 (493)
T ss_pred             EecccchHHHHHHHHHHH-hcCCChhHeeee--ecCccccChhhHHHcCCCCCcEEEE
Confidence            467899999999999999 579999999998  9999999999999999999999984

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.17  E-value=3e-11  Score=96.51  Aligned_cols=55  Identities=25%  Similarity=0.429  Sum_probs=50.7

Q ss_pred             CcccCCCcHHHHHHHHHhHhCC---CCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQ---LYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~---i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      |+|++++||.+||++|++ ..|   +++++|||+  ++||.|+|+++|++|||+++++|++
T Consensus        15 IeV~~~~TV~dLK~kI~~-~~g~~~ip~~~QkLI--y~GkiL~Dd~tL~dy~I~e~~~Ivv   72 (378)
T TIGR00601        15 IDMEPDETVKELKEKIEA-EQGKDAYPVAQQKLI--YSGKILSDDKTVREYKIKEKDFVVV   72 (378)
T ss_pred             EEeCCcChHHHHHHHHHH-hhCCCCCChhHeEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence            578999999999999999 466   999999998  9999999999999999999998874

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.16  E-value=6.3e-11  Score=76.59  Aligned_cols=55  Identities=16%  Similarity=0.356  Sum_probs=51.4

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|.+++|++.||+++++ +.++++++|||.  |+|+.|++++|+++||+++|++|++
T Consensus        26 ~~v~~~~~l~~l~~~y~~-~~gi~~~~~rf~--f~G~~L~~~~T~~~l~m~d~d~I~v   80 (87)
T cd01763          26 FKIKRSTPLKKLMEAYCQ-RQGLSMNSVRFL--FDGQRIRDNQTPDDLGMEDGDEIEV   80 (87)
T ss_pred             EEEcCCCHHHHHHHHHHH-HhCCCccceEEE--ECCeECCCCCCHHHcCCCCCCEEEE
Confidence            368899999999999999 689999999998  9999999999999999999999875

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.15  E-value=9.1e-11  Score=75.58  Aligned_cols=60  Identities=18%  Similarity=0.274  Sum_probs=51.5

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCe-----ec-CCcchhhhcCCCCCceEEEeccCC
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK-----IL-KDSDDVKSLGLKNGDMVFIKDLGP   63 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk-----~L-~D~ktL~~~gi~~g~tL~vKDlGp   63 (107)
                      .++++.||.+||++++. ..|++|+.|||.+ ++|+     .| +|+++|++||+++|++|||.|.=|
T Consensus        18 r~~~~~Tv~~lK~kl~~-~~G~~~~~mrL~l-~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~~p   83 (84)
T cd01789          18 KYSRGLTIAELKKKLEL-VVGTPASSMRLQL-FDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDVSG   83 (84)
T ss_pred             ecCCCCcHHHHHHHHHH-HHCCCccceEEEE-EcCCCCeEeecCCCccEeeeccCCCCCEEEEEeCCC
Confidence            37899999999999999 6899999999963 4444     36 678899999999999999999765

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=99.09  E-value=1.6e-10  Score=74.36  Aligned_cols=62  Identities=24%  Similarity=0.428  Sum_probs=48.4

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEec--cCCe---ec-CCcchhhhcCCCCCceEEEeccCCc
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE--IKGK---IL-KDSDDVKSLGLKNGDMVFIKDLGPQ   64 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~--~~Gk---~L-~D~ktL~~~gi~~g~tL~vKDlGpQ   64 (107)
                      .++++.||.+||++|+. ..|++++.|+|.+.  .++.   .+ +|+++|.+||+++|.+|+|.|..|+
T Consensus        19 r~~~~~Tv~eLK~kl~~-~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~~p~   86 (87)
T PF14560_consen   19 RFPKSITVSELKQKLEK-LTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVDTNPS   86 (87)
T ss_dssp             EEETTSBHHHHHHHHHH-HHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE-T--
T ss_pred             EcCCCCCHHHHHHHHHH-HhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEeCCCC
Confidence            46789999999999999 68999999999864  2332   34 4678999999999999999999885

>KOG0011|consensus

Probab=98.76  E-value=8e-09  Score=81.06  Aligned_cols=55  Identities=27%  Similarity=0.414  Sum_probs=50.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCC--CCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQ--LYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~--i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++.|+.||.++|++|+. ..|  +++++|+|+  ++||.|+|+.|+.+|+++++..|+|
T Consensus        15 iev~Pe~tV~evK~kIet-~~g~dyP~~~QkLI--y~GkiL~D~~tv~Eykv~E~~fiVv   71 (340)
T KOG0011|consen   15 IEVKPEDTVVEVKKKIET-EKGPDYPAEQQKLI--YSGKILKDETTVGEYKVKEKKFIVV   71 (340)
T ss_pred             eecCcchhHHHHHHHHHh-ccCCCCchhhheee--ecceeccCCcchhhhccccCceEEE
Confidence            578999999999999998 455  999999998  9999999999999999999997765

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=98.69  E-value=2.1e-08  Score=61.80  Aligned_cols=55  Identities=24%  Similarity=0.396  Sum_probs=48.3

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCc-cceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYP-DRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~-~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      .|.+++|+..|++.+++ ..++++ +..+|.  |+|+.|.+++|++++|+++|++|.+.
T Consensus        16 ~v~~~~~~~~l~~~~~~-~~~i~~~~~~~l~--fdG~~L~~~~T~~~~~ied~d~Idv~   71 (72)
T PF11976_consen   16 KVKPTTTVSKLIEKYCE-KKGIPPEESIRLI--FDGKRLDPNDTPEDLGIEDGDTIDVI   71 (72)
T ss_dssp             EEETTSCCHHHHHHHHH-HHTTTT-TTEEEE--ETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred             EECCCCcHHHHHHHHHH-hhCCCccceEEEE--ECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence            57899999999999999 588999 888888  99999999999999999999999763

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0001|consensus

Probab=98.58  E-value=1.6e-07  Score=55.85  Aligned_cols=55  Identities=25%  Similarity=0.379  Sum_probs=50.2

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      ++.+..+|..+|.+|+. ..++++++|++.  +.|+.|.|+.++.+|+|..++++++.
T Consensus        15 ~~~~~~~i~~~k~~i~~-~~~~~~~~q~~~--~~~~~l~d~~~l~~~~i~~~~~~~l~   69 (75)
T KOG0001|consen   15 EVSPSDTIEVVKAKIRD-KEGIPVDQQRLI--FGGKPLEDGRTLADYNIQEGSTLHLV   69 (75)
T ss_pred             EecCCCHHHHHHHHHHh-hcCCCCeeEEEE--ECCEECcCCCcHHHhCCCCCCEEEEE
Confidence            57889999999999999 689999999987  88999999999999999999998743

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.45  E-value=2.6e-07  Score=63.06  Aligned_cols=49  Identities=20%  Similarity=0.294  Sum_probs=43.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCC
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKN   52 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~   52 (107)
                      +++.++.||.+||++|+. .-+-+|+.|||.  ..+..|+|++||++||+.+
T Consensus        16 ~dakes~tVlelK~~ieg-I~k~pp~dQrL~--kd~qvLeD~kTL~d~g~t~   64 (119)
T cd01788          16 TDAKESTTVYELKRIVEG-ILKRPPEDQRLY--KDDQLLDDGKTLGDCGFTS   64 (119)
T ss_pred             eecCCcccHHHHHHHHHH-HhcCChhHheee--cCceeecccccHHHcCccc
Confidence            367899999999999999 578899999997  6678899999999999943

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.37  E-value=1.1e-06  Score=49.29  Aligned_cols=56  Identities=36%  Similarity=0.538  Sum_probs=49.4

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD   60 (107)
                      .+++++|++++|++|.+ +.+.++++++|.  .+|..+++...+.++++.+++++++..
T Consensus        13 ~~~~~~tv~~l~~~i~~-~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196          13 LVPSGTTVADLKEKLAK-KLGLPPEQQRLL--VNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             EcCCCCcHHHHHHHHHH-HHCcChHHeEEE--ECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            45689999999999999 567899999998  889999988888899999999998764

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.35  E-value=2.7e-07  Score=59.14  Aligned_cols=59  Identities=34%  Similarity=0.541  Sum_probs=35.6

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCC-eec--CCcchhhhcCCCCCceEEEec
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG-KIL--KDSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~G-k~L--~D~ktL~~~gi~~g~tL~vKD   60 (107)
                      |++++++|+.+||++|++ ..+++.+.|.|....++ ..+  .+++||+++|++.|+-||++-
T Consensus        18 ie~~~~~t~~~L~~kI~~-~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~~   79 (80)
T PF11543_consen   18 IEVSPSSTLSDLKEKISE-QLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLKP   79 (80)
T ss_dssp             EEE-TTSBHHHHHHHHHH-HS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE---
T ss_pred             EEcCCcccHHHHHHHHHH-HcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEec
Confidence            578999999999999999 57899999988654443 345  467899999999999999873

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>KOG4248|consensus

Probab=98.12  E-value=2.4e-06  Score=75.17  Aligned_cols=55  Identities=16%  Similarity=0.487  Sum_probs=51.0

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEecc
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL   61 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDl   61 (107)
                      +...+||+++|..|.+ +-+|+.+.|||+  +.|++|.|+|++.+||| +|-+||+-|=
T Consensus        19 ig~q~ti~~~~d~~r~-~~ni~s~~qr~i--~~grvl~~~k~vq~~~v-dgk~~hlver   73 (1143)
T KOG4248|consen   19 IGAQMTIKEFKDHIRA-SVNIPSEKQRLI--YQGRVLQDDKKVQEYNV-DGKVIHLVER   73 (1143)
T ss_pred             echHHHHHHHHHHHHH-hcccccccceee--ecceeeccchhhhhccC-CCeEEEeecc
Confidence            5567899999999999 689999999999  99999999999999999 9999998876

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=97.91  E-value=2.2e-05  Score=53.21  Aligned_cols=51  Identities=24%  Similarity=0.364  Sum_probs=35.9

Q ss_pred             cccCCCcHHHHHHHHHhHh----CC--CCccceeEEeccCCeecCCcchhhhcCCCCCc
Q psy12731          2 EVSGSFTVKDIKKEVHKAK----SQ--LYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD   54 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~----~~--i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~   54 (107)
                      ..++++||.+||+.|...-    +.  ..++..||+  +.||.|+|++||+++++..|.
T Consensus        19 ~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI--~~GriL~d~~tL~~~~~~~~~   75 (111)
T PF13881_consen   19 RFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLI--YAGRILEDNKTLSDCRLPSGE   75 (111)
T ss_dssp             EE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEE--ETTEEE-SSSBTGGGT--TTS
T ss_pred             ccCccChHHHHHHHHHHHCccccccCCCChhhEEEE--eCCeecCCcCcHHHhCCCCCC
Confidence            4578999999999998631    11  234555666  999999999999999887654

>KOG4495|consensus

Probab=97.65  E-value=3.5e-05  Score=51.35  Aligned_cols=50  Identities=16%  Similarity=0.187  Sum_probs=41.2

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCC
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKN   52 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~   52 (107)
                      +.+++.||.+||.+++. ...-|++.|||.+-..-..|.|.+||+++|..+
T Consensus        17 da~es~tV~elK~~l~g-i~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts   66 (110)
T KOG4495|consen   17 DAKESSTVFELKRKLEG-ILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS   66 (110)
T ss_pred             ecCccccHHHHHHHHHH-HHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence            56899999999999999 566799999997433346789999999997654

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=97.43  E-value=0.00022  Score=47.26  Aligned_cols=42  Identities=29%  Similarity=0.416  Sum_probs=33.6

Q ss_pred             CCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhh
Q psy12731          5 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKS   47 (107)
Q Consensus         5 ~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~   47 (107)
                      .++||..||++|-+. -.-.+++.||++.++|+.|.|+..|+.
T Consensus        22 ~~~Tv~~LK~lIR~~-~p~~~s~~rLRlI~~Gr~L~d~t~l~~   63 (97)
T PF10302_consen   22 NTTTVAWLKQLIRER-LPPEPSRRRLRLIYAGRLLNDHTDLSS   63 (97)
T ss_pred             CcccHHHHHHHHHhh-cCCCCccccEEeeecCcccCccchhhh
Confidence            789999999999995 334566666777799999999887654

They contain a characteristic GFDRL sequence motif.

>KOG3493|consensus

Probab=97.39  E-value=3.5e-05  Score=47.90  Aligned_cols=53  Identities=17%  Similarity=0.263  Sum_probs=44.4

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV   56 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL   56 (107)
                      |...+++||.|+|..|+. ..|..+++..|.  --+...+|.-+|++|.+.+|..+
T Consensus        16 vKCn~dDtiGD~KKliaa-QtGT~~~kivl~--k~~~i~kd~I~L~dyeihdg~~l   68 (73)
T KOG3493|consen   16 VKCNTDDTIGDLKKLIAA-QTGTRPEKIVLK--KWYTIFKDHITLSDYEIHDGMNL   68 (73)
T ss_pred             EEeCCcccccCHHHHHHH-hhCCChhHhHHH--hhhhhhhcccceeeEEeccCccE
Confidence            356799999999999999 589999987764  44567799999999999998754

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=97.33  E-value=0.00056  Score=43.63  Aligned_cols=56  Identities=13%  Similarity=0.288  Sum_probs=43.5

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccC-C--eecCCcchhhhcCCCCCceEEEe
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIK-G--KILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~-G--k~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      .|+|..+|..+|++|.+. -++ ..+|||.+... |  ..|.+.+||++|||=+...|.+-
T Consensus        16 ~vnPy~pI~k~K~kI~~~-~~~-~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~ll   74 (80)
T cd01811          16 RVNPYSPIRKIKEKIRRS-RNC-SGLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLL   74 (80)
T ss_pred             EeCCcchHHHHHHHHHHh-hCc-ccceEEEeecCCcccccccccccHhhhcceeccEEEEE
Confidence            578999999999999993 444 55999986433 3  34688999999999877776653

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG1872|consensus

Probab=97.31  E-value=0.00035  Score=57.37  Aligned_cols=53  Identities=26%  Similarity=0.376  Sum_probs=49.1

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++.++|+..+|+++.. ..|.+|+||++.  .+|+.++|+-.....+|+++.+|++
T Consensus        20 l~~d~t~~vlKaqlf~-LTgV~PeRQKv~--vKGg~a~dd~~~~al~iKpn~~lmM   72 (473)
T KOG1872|consen   20 LSTDETPSVLKAQLFA-LTGVPPERQKVM--VKGGLAKDDVDWGALQIKPNETLMM   72 (473)
T ss_pred             ccCCCchHHHHHHHHH-hcCCCccceeEE--EecccccccccccccccCCCCEEEe
Confidence            7899999999999999 699999999987  9999999997788899999999985

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.28  E-value=0.00027  Score=44.60  Aligned_cols=57  Identities=18%  Similarity=0.360  Sum_probs=38.7

Q ss_pred             cccCCCcHHHHHHHHHhHhCCC---Cccce-eEEec-cCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQL---YPDRQ-AVRLE-IKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i---~~~rQ-rL~l~-~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      .++.+.+|++|...+.+. -+.   .+..+ .+.+. .+|..|++++||+++||.+|+.|+++
T Consensus        18 ~lP~~vpv~~li~~l~~~-~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~   79 (79)
T PF08817_consen   18 ALPADVPVAELIPELVEL-LGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR   79 (79)
T ss_dssp             EEETTSBTTHHHHHHHHH-S---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred             EcCCCCcHHHHHHHHHHH-hCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence            467889999999999883 444   22222 24555 78999999999999999999999863

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>KOG0006|consensus

Probab=97.18  E-value=0.00028  Score=56.09  Aligned_cols=54  Identities=22%  Similarity=0.306  Sum_probs=45.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF   57 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~   57 (107)
                      |+|+.+..|.+||+.+++ ..|+++++.|++  |.||.|.|+.|++.+.+.-.+.+|
T Consensus        18 v~v~~~t~I~~lke~Vak-~~gvp~D~L~vi--FaGKeLs~~ttv~~cDL~qqs~~h   71 (446)
T KOG0006|consen   18 VEVDSDTSIFQLKEVVAK-RQGVPADQLRVI--FAGKELSNDTTVQNCDLSQQSATH   71 (446)
T ss_pred             EEEecCCCHHHHHHHHHH-hhCCChhheEEE--EeccccccCceeecccccccchhh
Confidence            478899999999999999 699999999988  999999999998866554444433

>KOG3206|consensus

Probab=96.40  E-value=0.0086  Score=44.98  Aligned_cols=63  Identities=17%  Similarity=0.210  Sum_probs=51.9

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEec----cCCeecC-CcchhhhcCCCCCceEEEeccCCcc
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE----IKGKILK-DSDDVKSLGLKNGDMVFIKDLGPQI   65 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~----~~Gk~L~-D~ktL~~~gi~~g~tL~vKDlGpQi   65 (107)
                      +.+++.||+++|.++.. ..|.+++..+|-+-    .++..|. +++.|..|+..+|..||+.|.-+|-
T Consensus        18 r~~~~ltl~q~K~KLe~-~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~   85 (234)
T KOG3206|consen   18 RLSNSLTLAQFKDKLEL-LTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQS   85 (234)
T ss_pred             hcCCcCcHHHHHhhhhh-hhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCccc
Confidence            35789999999999999 68999999998751    1234564 5678999999999999999997764

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=96.04  E-value=0.015  Score=36.75  Aligned_cols=55  Identities=24%  Similarity=0.330  Sum_probs=40.9

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhc-CCCCCceEEEe
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSL-GLKNGDMVFIK   59 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~-gi~~g~tL~vK   59 (107)
                      |+++++|.|+++.+.. .+. .-..-...+..+|+.|+|...+++. |+++|++|.++
T Consensus         1 v~~~d~v~dvrq~L~~-~~~-t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lv   56 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAE-SPE-TCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELV   56 (76)
T ss_pred             CChhhHHHHHHHHHHh-Ccc-ccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEE
Confidence            6789999999999999 332 1122223345899999888888775 68899988765

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=95.57  E-value=0.039  Score=34.00  Aligned_cols=54  Identities=22%  Similarity=0.187  Sum_probs=37.0

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF   57 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~   57 (107)
                      |.++|++|+.++-++.-+ +.++++++-.|.  +++|.|+-+-++.-.|+.+|++|-
T Consensus        11 vkvtp~~~l~~VL~eac~-k~~l~~~~~~L~--h~~k~ldlslp~R~snL~n~akLe   64 (65)
T PF11470_consen   11 VKVTPNTTLNQVLEEACK-KFGLDPSSYDLK--HNNKPLDLSLPFRLSNLPNNAKLE   64 (65)
T ss_dssp             E---TTSBHHHHHHHHHH-HTT--GGG-EEE--ETTEEESSS-BHHHH---SS-EEE
T ss_pred             EEECCCCCHHHHHHHHHH-HcCCCccceEEE--ECCEEeccccceeecCCCCCCEEe
Confidence            467899999999888877 689999976666  999999988899999999999874

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=95.44  E-value=0.082  Score=33.98  Aligned_cols=57  Identities=16%  Similarity=0.292  Sum_probs=44.6

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC--------CcchhhhcCCCCCceEEEecc
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--------DSDDVKSLGLKNGDMVFIKDL   61 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~--------D~ktL~~~gi~~g~tL~vKDl   61 (107)
                      ...++||++|.+-|.. .+ ..++.-+|...|=.|.+.        .+.||++.|+.....|.|.|+
T Consensus        21 F~~~~tl~~l~~fv~~-~~-~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~d~   85 (85)
T cd01774          21 FLFTQSLRVIHDFLFS-LK-ETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQDL   85 (85)
T ss_pred             eCCCCcHHHHHHHHHh-CC-CCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEecC
Confidence            3578999999999977 33 456677777556567775        356999999999999999885

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=95.37  E-value=0.094  Score=32.79  Aligned_cols=56  Identities=13%  Similarity=0.092  Sum_probs=43.2

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCC---cchhhhcCCCCCceEEEe
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD---SDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D---~ktL~~~gi~~g~tL~vK   59 (107)
                      .++++||++|.+-+.. ..+.....-.|...+-.+.+.+   ++||.+.|+...++|.++
T Consensus        21 F~~~~tl~~v~~~v~~-~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~   79 (80)
T smart00166       21 FPSSDTLRTVYEFVSA-ALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE   79 (80)
T ss_pred             eCCCCcHHHHHHHHHH-cccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence            4689999999999966 3555555566766677788864   479999999888888875

Present in FAF1 and Shp1p.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=95.05  E-value=0.072  Score=33.17  Aligned_cols=56  Identities=14%  Similarity=0.129  Sum_probs=42.0

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccc-eeEEeccCCeecCCc--chhhhcCCCCCceEEEe
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDR-QAVRLEIKGKILKDS--DDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~r-QrL~l~~~Gk~L~D~--ktL~~~gi~~g~tL~vK   59 (107)
                      ..+++||.+|.+-|... ...+... =.|...+-.+.+.++  +||++.|+...++|+|+
T Consensus        23 F~~~~tl~~l~~~v~~~-~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~   81 (82)
T PF00789_consen   23 FPKSDTLQDLYDFVESQ-LFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE   81 (82)
T ss_dssp             EETTSBHHHHHHHHHHH-HHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred             ECCcchHHHHHHHHHHh-cCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence            46899999999999883 3333332 466655667888543  69999999999999886

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=94.89  E-value=0.16  Score=32.14  Aligned_cols=52  Identities=19%  Similarity=0.188  Sum_probs=36.5

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC-CcchhhhcCCCCCc
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDVKSLGLKNGD   54 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~-D~ktL~~~gi~~g~   54 (107)
                      .+.++||++|.+-|....+......-.|...+-.|.|. +++||+|.|+.+..
T Consensus        21 F~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~   73 (79)
T cd01770          21 FNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV   73 (79)
T ss_pred             eCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence            46789999999999983222222344565556678885 47799999998643

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=94.58  E-value=0.23  Score=30.77  Aligned_cols=54  Identities=15%  Similarity=0.289  Sum_probs=39.1

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCC---cchhhhcCCCCCceEEEe
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD---SDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D---~ktL~~~gi~~g~tL~vK   59 (107)
                      .++++||.+|.+-|.. . +.....-+|...+-.+.+.|   ++||++.|+. .+.+.++
T Consensus        19 F~~~~tl~~l~~fv~~-~-~~~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~   75 (77)
T cd01767          19 FNSTHKLSDVRDFVES-N-GPPAEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR   75 (77)
T ss_pred             eCCCCCHHHHHHHHHH-c-CCCCCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence            4689999999999988 2 23344456665667788854   6799999998 4555544

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>KOG1769|consensus

Probab=94.37  E-value=0.12  Score=34.44  Aligned_cols=54  Identities=13%  Similarity=0.285  Sum_probs=47.4

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      .|.-+++.+.|.+...+ +.|++.+..|+.  |+|+.+++.+|=++.+.++|++|-+
T Consensus        36 kikr~t~LkKLM~aYc~-r~Gl~~~s~RFl--FdG~rI~~~~TP~~L~mEd~D~Iev   89 (99)
T KOG1769|consen   36 KIKRHTPLKKLMKAYCE-RQGLSMNSLRFL--FDGQRIRETHTPADLEMEDGDEIEV   89 (99)
T ss_pred             EeecCChHHHHHHHHHH-HcCCccceEEEE--ECCcCcCCCCChhhhCCcCCcEEEE
Confidence            35567888999999999 689999999988  9999999999999999999998854

>KOG0013|consensus

Probab=94.31  E-value=0.069  Score=40.25  Aligned_cols=49  Identities=22%  Similarity=0.340  Sum_probs=44.4

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCc
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD   54 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~   54 (107)
                      +..-+|+.++|.+++. ..+.++-.||+.  ++|+.|-|...|+++++..|.
T Consensus       163 a~~~Dtv~eik~~L~A-aeg~D~~sQrif--~Sg~~l~dkt~LeEc~iekg~  211 (231)
T KOG0013|consen  163 APHYDTVGEIKRALRA-AEGVDPLSQRIF--FSGGVLVDKTDLEECKIEKGQ  211 (231)
T ss_pred             ccCcCcHHHHHHHHHH-hhccchhhheee--ccCCceeccccceeeeecCCC
Confidence            4567899999999999 689999999988  999999999999999999995

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=93.77  E-value=0.38  Score=30.16  Aligned_cols=55  Identities=9%  Similarity=0.164  Sum_probs=41.8

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCC---cchhhhcCCCCCceEEEe
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD---SDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D---~ktL~~~gi~~g~tL~vK   59 (107)
                      .+.++|+++|.+-+.. ..+ ....-.|...+-.|.+.+   ++||++.|+...++|++-
T Consensus        21 F~~~~tl~~v~~fV~~-~~~-~~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~   78 (79)
T cd01772          21 FKAREQLAAVRLFVEL-NTG-NGGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT   78 (79)
T ss_pred             eCCCChHHHHHHHHHH-cCC-CCCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence            4678999999999987 332 234456766677888864   479999999999888764

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades

Probab=91.94  E-value=0.26  Score=31.74  Aligned_cols=58  Identities=26%  Similarity=0.460  Sum_probs=40.7

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeec--------CC------cchhhhcCCCCCceEEEeccC
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL--------KD------SDDVKSLGLKNGDMVFIKDLG   62 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L--------~D------~ktL~~~gi~~g~tL~vKDlG   62 (107)
                      |+++++.|.+++-+.+.+ .+.+...+=.|+  .+++.|        +.      +++|.+. +.+|..|+|-|-.
T Consensus         1 i~v~~~~TL~~lid~L~~-~~~~qlk~PSlt--~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD~~   72 (84)
T PF08825_consen    1 IEVSPSWTLQDLIDSLCE-KPEFQLKKPSLT--TANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTDPT   72 (84)
T ss_dssp             EEESTTSBSHHHHHHHHH-STTT--SS-EEE--SSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEETT
T ss_pred             CCcCccchHHHHHHHHHh-ChhhhcCCCccc--CCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEECCC
Confidence            578999999999999999 565554444454  444432        21      4678888 8999999998863

This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=90.75  E-value=1.5  Score=28.19  Aligned_cols=55  Identities=13%  Similarity=0.209  Sum_probs=44.8

Q ss_pred             cCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCC---cchhhhcCCCCCceEEEec
Q psy12731          4 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD---SDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         4 ~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D---~ktL~~~gi~~g~tL~vKD   60 (107)
                      ..++|+++|-.-+..  .+.+++.-.|...+=.|.+..   +.||++.|+....+|+|-|
T Consensus        23 ~~~~~L~~v~~fv~~--~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~   80 (82)
T cd01773          23 PEQAKLLALVRHVQS--KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE   80 (82)
T ss_pred             CCCCcHHHHHHHHHh--cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence            467899999998888  367888888876677777742   4699999999999998865

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B

Probab=89.97  E-value=0.49  Score=30.49  Aligned_cols=63  Identities=16%  Similarity=0.233  Sum_probs=35.1

Q ss_pred             CCCcHHHHHHHHHhHhCCCCccc----eeEEeccCCe---ecCCcchhhhcCCCCCceEEEeccCCcchhh
Q psy12731          5 GSFTVKDIKKEVHKAKSQLYPDR----QAVRLEIKGK---ILKDSDDVKSLGLKNGDMVFIKDLGPQIGWS   68 (107)
Q Consensus         5 ~~~TV~~LK~~I~~~~~~i~~~r----QrL~l~~~Gk---~L~D~ktL~~~gi~~g~tL~vKDlGpQi~wr   68 (107)
                      ..+|+.+|-++|-+.+-|+..-.    .++.. ..+-   .-..+++|+++||++|+.|.+.|.=-...|+
T Consensus         7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ily-d~de~~~~~~l~k~L~elgi~~gs~L~v~D~~q~~~~~   76 (87)
T PF14732_consen    7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILY-DSDEEEYDDNLPKKLSELGIVNGSILTVDDFDQDFNLE   76 (87)
T ss_dssp             TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE--SSSSSSTTCTTSBGGGGT--TT-EEEEEETTTTEEEE
T ss_pred             hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEE-cCCcchhhhcccCChhHcCCCCCCEEEEEEcCCCcEEE
Confidence            46899999998876444443311    12221 1121   2223578999999999999999986555554

>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown

Probab=89.92  E-value=1.2  Score=30.78  Aligned_cols=56  Identities=32%  Similarity=0.415  Sum_probs=37.5

Q ss_pred             ccC-CCcHHHHHHHHHhH---hCCCCcccee------EEe--------------ccC-Ceec---CCcchhhhcCCCCCc
Q psy12731          3 VSG-SFTVKDIKKEVHKA---KSQLYPDRQA------VRL--------------EIK-GKIL---KDSDDVKSLGLKNGD   54 (107)
Q Consensus         3 v~~-~~TV~~LK~~I~~~---~~~i~~~rQr------L~l--------------~~~-Gk~L---~D~ktL~~~gi~~g~   54 (107)
                      |+. +.||+||++.+.+.   .++++|-|-.      |.-              ..+ +-.|   ++++||.++||.+++
T Consensus        22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET  101 (122)
T PF10209_consen   22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET  101 (122)
T ss_pred             CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence            454 88999998877763   4667766642      111              011 1345   677899999999999


Q ss_pred             eEEE
Q psy12731         55 MVFI   58 (107)
Q Consensus        55 tL~v   58 (107)
                      +|-+
T Consensus       102 EiSf  105 (122)
T PF10209_consen  102 EISF  105 (122)
T ss_pred             eeee
Confidence            9854

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=89.89  E-value=0.89  Score=28.18  Aligned_cols=52  Identities=25%  Similarity=0.360  Sum_probs=30.8

Q ss_pred             cccCC-CcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGS-FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~-~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++ +||.+|++.+.++.+.+-..+..+..-.+++...+     +.-+++|++|-+
T Consensus        21 ~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai   73 (80)
T TIGR01682        21 ELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAF   73 (80)
T ss_pred             ECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEE
Confidence            45656 89999999999853332221222222245655553     456788888754

The C-terminal Gly-Gly of this model is critical to function.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=88.38  E-value=2.7  Score=26.52  Aligned_cols=55  Identities=13%  Similarity=0.064  Sum_probs=43.4

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC--C-cchhhhcCCCCCceEEEe
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--D-SDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~--D-~ktL~~~gi~~g~tL~vK   59 (107)
                      ...++|+++|-+-+..  .+.++..-+|.-++=.|.+.  | +.||++.|+....+|.|.
T Consensus        21 F~~t~~L~~l~~fv~~--~~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve   78 (80)
T cd01771          21 FLGDTPLQVLLNFVAS--KGYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE   78 (80)
T ss_pred             eCCCCcHHHHHHHHHh--cCCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence            3578999999999987  36777777887667677774  2 469999999998888874

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=88.00  E-value=1  Score=27.38  Aligned_cols=52  Identities=25%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             cccCCCcHHHHHHHHHhHhCCC-CccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQL-YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i-~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++.||.+|.+.+.++.+.. ...+..+..-.+|+..+     .+.-+++|++|.+
T Consensus        21 ~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i   73 (80)
T cd00754          21 ELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAI   73 (80)
T ss_pred             ECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEE
Confidence            4556899999999999843320 00122222225676665     3345788888865

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=87.95  E-value=0.58  Score=29.12  Aligned_cols=52  Identities=25%  Similarity=0.254  Sum_probs=31.3

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++.++||.+|++.+..+.+++...+.....-.+|+...     .+.-+++|++|-+
T Consensus        24 ~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai   75 (82)
T PLN02799         24 ELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAI   75 (82)
T ss_pred             ECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEE
Confidence            567789999999999874444333222222224565543     2334678888754

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=87.31  E-value=2.5  Score=30.52  Aligned_cols=50  Identities=16%  Similarity=0.142  Sum_probs=33.1

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccce-eEEeccCCeec--CCcchhhhcCCCCC
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQ-AVRLEIKGKIL--KDSDDVKSLGLKNG   53 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQ-rL~l~~~Gk~L--~D~ktL~~~gi~~g   53 (107)
                      .+++++||.+|+..|.+ ..+++...| .|.. ..++.|  .++..+.++.-.+.
T Consensus        20 ~lp~~ttv~dL~~~l~~-~~~~~~~~~~~L~~-~~n~~l~~~~~~~~s~l~~~~~   72 (162)
T PF13019_consen   20 SLPSTTTVSDLKDRLSE-RLPIPSSSQLYLTT-NSNGQLSPSSDIPLSSLLSSSQ   72 (162)
T ss_pred             eCCCCCcHHHHHHHHHh-hcCCCccceeEEEE-eCCCeeCCCccccHHhhccCcC
Confidence            56789999999999999 577777775 2432 334444  44555666654443

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=87.10  E-value=0.48  Score=28.65  Aligned_cols=54  Identities=33%  Similarity=0.438  Sum_probs=36.0

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++...||.+|.+.+..+.+.+. .+.++....+|+...+  .-.+.-+++|++|.+
T Consensus        17 ~~~~~~tv~~ll~~l~~~~p~~~-~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i   70 (77)
T PF02597_consen   17 EVPEGSTVRDLLEALAERYPELA-LRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAI   70 (77)
T ss_dssp             EESSTSBHHHHHHHHCHHTGGGH-TTTTEEEEETTEEEGG--GTTTSBEETTEEEEE
T ss_pred             ecCCCCcHHHHHHHHHhhccccc-cCccEEEEECCEEcCC--ccCCcCcCCCCEEEE
Confidence            45678999999999998543332 2233333367877776  244566788888865

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function

Probab=86.89  E-value=2.1  Score=26.75  Aligned_cols=55  Identities=15%  Similarity=0.361  Sum_probs=37.5

Q ss_pred             ccCCCcHHHHHHHHHh--HhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          3 VSGSFTVKDIKKEVHK--AKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~--~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      .++++..--+.++--+  ...+-|++...|. +.+|..|+-++.++|+|+.+|-+|++
T Consensus        12 ANvnaPLh~v~akALe~sgNvgQP~ENWElk-De~G~vlD~~kKveD~GftngvkLFL   68 (76)
T PF10790_consen   12 ANVNAPLHPVRAKALEQSGNVGQPPENWELK-DESGQVLDVNKKVEDFGFTNGVKLFL   68 (76)
T ss_pred             cCCCCcchHHHHHHHhhccccCCCcccceee-ccCCcEeeccchhhhccccccceEEE
Confidence            3444444444333222  1345678887775 47899999999999999999998864

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=85.33  E-value=4  Score=26.62  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=35.1

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccC--C-eecCC-cchhhhcCCCCCceEEE
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIK--G-KILKD-SDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~--G-k~L~D-~ktL~~~gi~~g~tL~v   58 (107)
                      .+..+||+.++..+.+ ...+ ...-||...+.  + -.|.+ +.|+++.|+.+|-+|.+
T Consensus        20 FSk~DTI~~v~~~~rk-lf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vli   77 (88)
T PF14836_consen   20 FSKTDTIGFVEKEMRK-LFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLI   77 (88)
T ss_dssp             E-TTSBHHHHHHHHHH-HCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEE
T ss_pred             ccccChHHHHHHHHHH-HhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEE
Confidence            4678999999999999 4677 55567763332  2 34655 46999999999988764

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=84.84  E-value=2.4  Score=26.51  Aligned_cols=50  Identities=24%  Similarity=0.294  Sum_probs=28.2

Q ss_pred             CCcHHHHHHHHHhHhCCCCc----cce----eEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          6 SFTVKDIKKEVHKAKSQLYP----DRQ----AVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         6 ~~TV~~LK~~I~~~~~~i~~----~rQ----rL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      .+||.+|.+.+.++.++...    +.-    .+..-.+|+..+++..   .-+++|++|.+
T Consensus        24 ~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i   81 (88)
T TIGR01687        24 GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAI   81 (88)
T ss_pred             CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEE
Confidence            78999999999985432111    100    0111145555543321   45788888865

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

>COG5417 Uncharacterized small protein [Function unknown]

Probab=83.22  E-value=2.6  Score=26.97  Aligned_cols=54  Identities=15%  Similarity=0.311  Sum_probs=35.4

Q ss_pred             cCCCcHHHHHHHHHhHhCCC---CccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          4 SGSFTVKDIKKEVHKAKSQL---YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         4 ~~~~TV~~LK~~I~~~~~~i---~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +.--+|+.+-....+ ..++   +.+--.++...+++.|.++..|.+|+|.+|+-|.+
T Consensus        24 ~d~~pikklIdivwe-~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417          24 PDYLPIKKLIDIVWE-SLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             cccchHHHHHHHHHH-HhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            444566666555555 2332   23322344448899999999999999999997753

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=81.02  E-value=4.2  Score=24.68  Aligned_cols=58  Identities=19%  Similarity=0.187  Sum_probs=38.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCC-ccceeEEe--ccCC--eecCCcchhhhcCCC--CCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLY-PDRQAVRL--EIKG--KILKDSDDVKSLGLK--NGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~-~~rQrL~l--~~~G--k~L~D~ktL~~~gi~--~g~tL~vK   59 (107)
                      +++++++|+.++=++|.+ +-++. .+--.|..  ..+|  ..|+.+++|.+....  ...+++++
T Consensus        11 ~~v~~~~t~~~l~~~v~~-~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~fr   75 (80)
T PF09379_consen   11 FEVDPKTTGQDLLEQVCD-KLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFR   75 (80)
T ss_dssp             EEEETTSBHHHHHHHHHH-HHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEE
T ss_pred             EEEcCCCcHHHHHHHHHH-HcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEE
Confidence            368899999999999999 56764 22234543  2233  457888899888766  33456654

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>PRK00753 psbL photosystem II reaction center L; Provisional

Probab=80.67  E-value=1.3  Score=24.53  Aligned_cols=19  Identities=26%  Similarity=0.516  Sum_probs=16.4

Q ss_pred             hhhhHHHHHHHHhhccccc
Q psy12731         75 YAGPLFVYLIFYYRPWIFY   93 (107)
Q Consensus        75 Y~GPl~i~~lf~~~~~~iy   93 (107)
                      |.|.|+|+.+-.+|++|++
T Consensus        20 y~GlLlifvl~vLFssYff   38 (39)
T PRK00753         20 YLGLLLVFVLGILFSSYFF   38 (39)
T ss_pred             HHHHHHHHHHHHHHHhhcc
Confidence            8899999988888888775

>TIGR02958 sec_mycoba_snm4 secretion protein snm4

Probab=80.05  E-value=5.3  Score=32.90  Aligned_cols=56  Identities=13%  Similarity=0.235  Sum_probs=41.4

Q ss_pred             ccCCCcHHHHHHHHHhHhCCC------CccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQL------YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i------~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD   60 (107)
                      ++.+..|.|+--.|-+ .-+-      .+...+|. ..+|.+|+.++||.+.||.||+.|++.-
T Consensus        18 LPa~~PvaellP~ll~-~~~~~~~~~~~~~~w~L~-r~gG~pL~~~~sL~~~gV~DG~~L~L~p   79 (452)
T TIGR02958        18 LPADVPVAELIPDLVD-LLDDRGAAELGAVRWALA-RAGGSPLDPDASLAEAGVRDGELLVLVP   79 (452)
T ss_pred             cCCCCcHHHHHHHHHH-HhCcccccCCCCcceEEe-cCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence            4678888998888877 3321      12233332 3679999999999999999999998764

Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	107
2dzj_A	88	2dzjSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		2e-04

>pdb|2DZJ|A Chain A, 2dzjSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Synaptic Glycoprotein Sc2 Length = 88

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
          +V    T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DL
Sbjct: 29 KVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	107
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	6e-20
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	2e-08
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	4e-07
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	7e-07
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-06
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	3e-06
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	6e-06
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	8e-06
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	1e-05
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-05
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	2e-05
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	4e-05
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	6e-05
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	7e-05
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	2e-04
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	2e-04
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	3e-04

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 76.1 bits (187), Expect = 6e-20
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
          +V    T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DL
Sbjct: 29 KVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL 88

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 46.5 bits (111), Expect = 2e-08
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
           VS   TVKD+K ++    + + P  Q  +L  KGK+L ++  +K   + +G  +
Sbjct: 27 SVSPDCTVKDLKSQLQP-ITNVLPRGQ--KLIFKGKVLVETSTLKQSDVGSGAKL 78

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 45.7 bits (107), Expect = 4e-07
 Identities = 15/77 (19%), Positives = 29/77 (37%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
           +    TVK +K+++   K +        +L   GKIL D   ++   +   + V +   
Sbjct: 23 RMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 82

Query: 62 GPQIGWSTVFMAEYAGP 78
            + G  T    E +  
Sbjct: 83 KTKAGQGTSAPPEASPT 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 43.3 bits (101), Expect = 7e-07
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 5  GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
          G +++  +K+ +     +  PD + + L   G+ LKD   +   G++ G  V
Sbjct: 43 GGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTV 94

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
           V+ + T++ +K+E+ + + + +PD+    L   GKILKD D +   G+++G  V
Sbjct: 37 SVTDTCTIQQLKEEISQ-RFKAHPDQL--VLIFAGKILKDPDSLAQCGVRDGLTV 88

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
          ++  S T+ + K ++ +        +   +L   GK+L+DS  V   GLK+GD V
Sbjct: 17 DLEPSNTILETKTKLAQ-SISCEESQI--KLIYSGKVLQDSKTVSECGLKDGDQV 68

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 40.4 bits (95), Expect = 6e-06
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
           V+ + T++ +K+E+ + + + +PD+    L   GKILKD D +   G+++G  V
Sbjct: 32 SVTDTCTIQQLKEEISQ-RFKAHPDQL--VLIFAGKILKDPDSLAQCGVRDGLTV 83

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 40.1 bits (94), Expect = 8e-06
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
           V  + +V+  K+E+ K + + + D+    L   GKILKD D +   G+ +G  V
Sbjct: 40 AVPENSSVQQFKEEISK-RFKSHTDQL--VLIFAGKILKDQDTLSQHGIHDGLTV 91

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
           ++ +  V+  KK++ K       DR    L   GKIL+D D +   G+ +G  V
Sbjct: 32 FLAENSNVRRFKKQISK-YLHCNADRL--VLIFTGKILRDQDILSQRGILDGSTV 83

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
           V  + +V+  K+ + K + +   D+    L   GKILKD D +   G+ +G  V
Sbjct: 47 AVPENSSVQQFKEAISK-RFKSQTDQL--VLIFAGKILKDQDTLIQHGIHDGLTV 98

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD---MVFI 58
          +V    T  ++K+++H   + L P  Q  ++  KG  + +   ++ + + +G    +V  
Sbjct: 32 KVPLDSTGSELKQKIHS-ITGLPPAMQ--KVMYKGL-VPEDKTLREIKVTSGAKIMVVGS 87

Query: 59 KDLGPQIG 66
             GP  G
Sbjct: 88 TISGPSSG 95

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 38.0 bits (88), Expect = 4e-05
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAV-RLEIKGKILKDSDDVKSLGLKNGDMV 56
           +S   TV D+K+ +    + + P+RQ +  L++KGK  ++   + +L LK    +
Sbjct: 23 TLSEDDTVLDLKQFLKT-LTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKI 77

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 38.1 bits (89), Expect = 6e-05
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
           V+   TV   K+ ++K  + +    Q  RL   GKILKD   V+S  +++G  V
Sbjct: 43 NVAPESTVLQFKEAINK-ANGIPVANQ--RLIYSGKILKDDQTVESYHIQDGHSV 94

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 37.2 bits (87), Expect = 7e-05
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
           V+   TV   K+ ++K  + +    Q  RL   GKILKD   V+S  +++G  V
Sbjct: 19 NVAPESTVLQFKEAINK-ANGIPVANQ--RLIYSGKILKDDQTVESYHIQDGHSV 70

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLY--PDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
          ++    TVK +K+++   K +       Q  +L   GKIL D   +K   +   + V
Sbjct: 16 DIDPEETVKALKEKIESEKGKDAFPVAGQ--KLIYAGKILNDDTALKEYKIDEKNFV 70

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLY--PDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
           +    TVK +K+++   K +       Q  +L   GKIL D   ++   +   + V
Sbjct: 21 RMEPDETVKVLKEKIEAEKGRDAFPVAGQ--KLIYAGKILSDDVPIRDYRIDEKNFV 75

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 1   MEVSGSFTVKDIKKEVHKAKSQLYPDRQAV-RLEIKGKILKDSDDVKSLGLKNGDMVFIK 59
           ++++   TV+ ++ E+ + K+Q+ P+RQ +  L+ KGK   D+  + +L LK    + + 
Sbjct: 19  VDLTDQDTVEVLRHEIFR-KTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMV 77

Query: 60  DLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFY 93
                       + +  G +              
Sbjct: 78  GSTEADIEDACSLPDNIGEVVDDFDDADEREESV 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.81
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.76
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.7
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.68
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.66
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.65
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.64
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.62
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.62
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.6
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.6
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.59
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.58
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.58
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.58
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.58
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.58
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.57
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.57
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.57
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.57
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.56
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.56
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.56
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.56
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.56
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.56
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.56
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.56
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.55
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.55
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.55
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.55
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.55
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.55
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.54
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.54
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.54
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.54
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.54
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.54
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.54
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.54
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.53
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.52
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.52
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.52
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.52
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.52
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.52
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.51
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.51
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.51
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.51
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.24
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.49
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.48
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.48
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.48
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.48
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.47
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.46
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.46
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.46
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.46
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.45
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.45
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.45
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.44
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.43
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.43
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.41
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.4
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.39
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.39
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.39
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.38
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.38
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.38
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.37
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.37
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.36
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.34
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.26
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.2
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.19
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.19
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.02
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	98.93
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	98.88
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	98.87
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	98.81
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	98.72
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	98.69
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	98.66
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	98.58
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.53
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.06
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.02
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	97.89
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	97.74
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	97.7
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	97.53
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.42
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	97.2
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.0
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	96.99
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	96.85
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	96.44
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	96.15
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	95.76
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	95.72
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	95.53
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	95.48
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	95.01
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	94.98
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	94.18
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	93.79
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	93.73
1y8x_B	98	Ubiquitin-activating enzyme E1C; ubiquitin-conjuga	93.59
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	93.39
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	93.27
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	92.49
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	89.45
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	89.21
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	89.11
3onh_A	127	Ubiquitin-activating enzyme E1-like; ligase, SUMO	85.77
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	85.39
1wgy_A	104	RAP guanine nucleotide exchange factor 5; ubiquiti	84.99
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	84.54
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	83.82
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	83.79

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=1.7e-20  Score=120.99  Aligned_cols=60  Identities=37%  Similarity=0.578  Sum_probs=56.7

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEecc
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL   61 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDl   61 (107)
                      +|+|++||++||++|++++++++++||||++.++||+|+|++||++|||++|++||||||
T Consensus        29 ~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~KDL   88 (88)
T 2dzj_A           29 KVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL   88 (88)
T ss_dssp             EECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEECCC
T ss_pred             EcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEEEeC
Confidence            789999999999999995489999999999777899999999999999999999999998

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.76  E-value=7.2e-19  Score=114.06  Aligned_cols=68  Identities=24%  Similarity=0.367  Sum_probs=54.8

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE--Eecc-CCcchhhhhh
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF--IKDL-GPQIGWSTVF   71 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~--vKDl-GpQi~wrtVf   71 (107)
                      ++|++++||++||++|++ ..++++++|||.  ++|+.|+|+++|++||+++|++|+  ++++ |+|++||||=
T Consensus        15 ~~v~~~~TV~~LK~~I~~-~~gi~~~~qrL~--~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~~~~v~   85 (98)
T 1yx5_B           15 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPNSSSVD   85 (98)
T ss_dssp             EECCTTCBHHHHHHHHHH-HTCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEEEECCCCC---------
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcChhhEEEE--ECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCccccCC
Confidence            468899999999999999 689999999998  899999999999999999999887  7788 7999999985

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.70  E-value=1e-17  Score=108.57  Aligned_cols=65  Identities=14%  Similarity=0.054  Sum_probs=57.0

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEecc-CCee----cCCcchhhhcCCCCCceEEEeccCCcch
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KGKI----LKDSDDVKSLGLKNGDMVFIKDLGPQIG   66 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~-~Gk~----L~D~ktL~~~gi~~g~tL~vKDlGpQi~   66 (107)
                      +++++++||++||++|++ +.|+|+++|||.+.. .|+.    ++|+++|++|||++|++||+.|+|||+.
T Consensus        23 ~~v~~~~TV~~lK~ki~~-~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~~P~~~   92 (95)
T 1v6e_A           23 KRYSRSLTIAEFKCKLEL-VVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGSGP   92 (95)
T ss_dssp             EEECTTSBHHHHHHHHHH-HTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCSCCSS
T ss_pred             EEcCccCHHHHHHHHHHH-HHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEECCcccc
Confidence            368899999999999999 699999999998432 2454    4899999999999999999999999984

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.68  E-value=3.7e-17  Score=106.85  Aligned_cols=55  Identities=18%  Similarity=0.280  Sum_probs=52.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++++|++||++||++|++ +.|+|+++|||+  ++|+.|+|+.||++|+|++|+||++
T Consensus        36 v~v~p~DTI~~LK~~I~~-k~Gip~~qQrLi--f~Gk~LkD~~TL~dY~I~dgstLhL   90 (93)
T 3plu_A           36 VKCLGEDSVGDFKKVLSL-QIGTQPNKIVLQ--KGGSVLKDHISLEDYEVHDQTNLEL   90 (93)
T ss_dssp             EEEETTSBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             EEECCcCHHHHHHHHHHH-HhCCCHHHEEEE--eCCEEccCcCCHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999999975

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=8.1e-17  Score=106.47  Aligned_cols=56  Identities=13%  Similarity=0.191  Sum_probs=52.6

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      ++|++++||++||++|++ +.++|+++|||+  |+||+|+|++||++|||++|++|++-
T Consensus        34 lev~~~~TV~~lK~kI~~-k~gip~~qQrLI--~~GKiL~D~~TL~~y~I~~gsti~vl   89 (100)
T 1wju_A           34 LETRLHITGRELRSKIAE-TFGLQENYIKIV--INKKQLQLGKTLEEQGVAHNVKAMVL   89 (100)
T ss_dssp             EEEESSSBHHHHHHHHHH-HTTCCSTTCEEE--ETTEECCTTSBHHHHTCCSSEEEEEE
T ss_pred             EEeCCcCHHHHHHHHHHH-HHCcCHHHeEEE--eCCeECCCCCcHHHcCCCCCCEEEEE
Confidence            478999999999999999 699999999998  99999999999999999999998753

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.65  E-value=8.4e-17  Score=106.39  Aligned_cols=55  Identities=15%  Similarity=0.169  Sum_probs=52.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      |+|+|++||++||++|++ ++|++++||||+  +.||+|+|++||++|||++++||++
T Consensus        43 lev~p~dTV~~lK~~Ia~-k~Gip~~qQrLi--~~Gk~L~D~~TL~dygI~~gstlhL   97 (100)
T 1uh6_A           43 VKCNTDDTIGDLKKLIAA-QTGTRWNKIVLK--KWYTIFKDHVSLGDYEIHDGMNLEL   97 (100)
T ss_dssp             EEEETTSBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCSSCBHHHHTCCTTEEEEE
T ss_pred             EEeCCCCcHHHHHHHHHH-HhCCCHHHEEEE--ECCEECCCCCCHHHcCCCCCCEEEE
Confidence            478999999999999999 699999999998  9999999999999999999999975

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.64  E-value=2.1e-16  Score=106.90  Aligned_cols=64  Identities=17%  Similarity=0.278  Sum_probs=56.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEecc-CCee---c-CCcchhhhcCCCCCceEEEeccCCcc
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KGKI---L-KDSDDVKSLGLKNGDMVFIKDLGPQI   65 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~-~Gk~---L-~D~ktL~~~gi~~g~tL~vKDlGpQi   65 (107)
                      +++++++||++||++|++ +.|+|+++|||++.. +|+.   | +|+++|++|||++|++||++|+|||+
T Consensus        22 ~~v~~~~TV~~lK~ki~~-~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~p~~   90 (122)
T 1t0y_A           22 KKYPAGMSLNDLKKKLEL-VVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTGGN   90 (122)
T ss_dssp             EEEETTSBHHHHHHHHHH-HHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECTTCC
T ss_pred             EEeCCCCcHHHHHHHHHH-HhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCCCCC
Confidence            367899999999999999 699999999999432 3453   4 78999999999999999999999998

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.62  E-value=4e-16  Score=100.14  Aligned_cols=61  Identities=16%  Similarity=0.218  Sum_probs=55.5

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEec-----cCCeecCCcchhhhcCCCCCceEEEeccCC
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE-----IKGKILKDSDDVKSLGLKNGDMVFIKDLGP   63 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~-----~~Gk~L~D~ktL~~~gi~~g~tL~vKDlGp   63 (107)
                      .+++++||++||++|++ +.|+|+++|||++.     +.|+.|+|+++|++|||++|++||+-|.-|
T Consensus        20 r~~~s~TI~~lK~ki~~-~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P   85 (86)
T 4b6w_A           20 RYGLAQTIESIKENVFT-HFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP   85 (86)
T ss_dssp             EEETTSBHHHHHHHHHT-TSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred             EcCccCcHHHHHHHHHH-HHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence            47899999999999999 79999999999852     358899999999999999999999999876

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.62  E-value=5.3e-16  Score=96.39  Aligned_cols=55  Identities=29%  Similarity=0.303  Sum_probs=51.6

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ ..++|+++|||.  ++|+.|+|+++|++|||++|++|++
T Consensus        19 ~~v~~~~tV~~lK~~i~~-~~gip~~~qrL~--~~G~~L~d~~tL~~~~i~~~~~l~l   73 (79)
T 3phx_B           19 YEVRLTQTVAHLKQQVSG-LEGVQDDLFWLT--FEGKPLEDQLPLGEYGLKPLSTVFM   73 (79)
T ss_dssp             EEECTTSBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             EEECCcChHHHHHHHHHh-hcCCCHHHEEEE--ECCEECCCCCcHHHCCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999999874

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.60  E-value=8.8e-16  Score=94.41  Aligned_cols=57  Identities=28%  Similarity=0.400  Sum_probs=53.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD   60 (107)
                      +++++++||++||++|++ ..++++++|||.  ++|+.|+|+++|++||+++|++|++.+
T Consensus        18 ~~v~~~~tV~~LK~~i~~-~~~i~~~~qrL~--~~gk~L~d~~tL~~~~i~~g~~i~l~~   74 (77)
T 2bwf_A           18 VNVAPESTVLQFKEAINK-ANGIPVANQRLI--YSGKILKDDQTVESYHIQDGHSVHLVK   74 (77)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HhCCCHHHEEEE--ECCeEcCCCCCHHHcCCCCCCEEEEEE
Confidence            468899999999999999 589999999998  999999999999999999999999875

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.60  E-value=7.6e-16  Score=97.98  Aligned_cols=55  Identities=15%  Similarity=0.248  Sum_probs=51.8

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCee-cCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKI-LKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~-L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ ..|+|+++|||+  ++|+. |+|+++|++|||++|++|++
T Consensus        25 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~lL~D~~tL~~y~I~~gs~i~l   80 (84)
T 2kk8_A           25 LEVDYRDTLLVVKQKIER-SQHIPVSKQTLI--VDGIVILREDLTVEQCQIVPTSDIQL   80 (84)
T ss_dssp             EEECTTSBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCCSSSBHHHHTCCTTSCEEE
T ss_pred             EEECCCChHHHHHHHHHH-HHCcChHHEEEE--ECCEEecCCcCCHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999998  99999 99999999999999999976

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.59  E-value=1.9e-15  Score=95.23  Aligned_cols=62  Identities=15%  Similarity=0.271  Sum_probs=55.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE--EeccCCcc
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF--IKDLGPQI   65 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~--vKDlGpQi   65 (107)
                      ++|++++||++||++|++ ..++++++|||.  ++|+.|+|+++|++|+++++++|+  ++-+|..+
T Consensus        22 ~~v~~~~tV~~lK~~i~~-~~gi~~~~qrL~--~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~~   85 (87)
T 1wh3_A           22 YAINPNSFILGLKQQIED-QQGLPKKQQQLE--FQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGPS   85 (87)
T ss_dssp             EEECSSSBHHHHHHHHHH-HTCCCTTTEEEE--ETTEECCSSSBHHHHTCCTTEEEEEEECSCCCSC
T ss_pred             EEeCCCChHHHHHHHHHH-HhCCChHHEEEE--ECCEEccCCCCHHHCCCCCCCEEEEEEeccCCCC
Confidence            478899999999999999 689999999998  899999999999999999999875  66666554

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.58  E-value=1.8e-15  Score=97.34  Aligned_cols=53  Identities=21%  Similarity=0.242  Sum_probs=49.3

Q ss_pred             ccCCCcHHHHHHHH-HhHhCCCCccceeEEeccCCeecCCcchhhhcCC-CCCceEEE
Q psy12731          3 VSGSFTVKDIKKEV-HKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGL-KNGDMVFI   58 (107)
Q Consensus         3 v~~~~TV~~LK~~I-~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi-~~g~tL~v   58 (107)
                      +++++||++||++| ++ .+|+|+++|||+  |+||.|+|++||++|+| ++|++|++
T Consensus        20 v~~~~TV~~lK~~I~~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~y~I~~~~stl~v   74 (87)
T 2lxa_A           20 FSPSDTILQIKQHLISE-EKASHISEIKLL--LKGKVLHDNLFLSDLKVTPANSTITV   74 (87)
T ss_dssp             CCTTCBHHHHHHHHHHT-TSCSSSTTEEEE--ETTEECCTTCBHHHHCCCGGGCEEEE
T ss_pred             CCCCCcHHHHHHHHHHH-hcCCChHHEEEE--ECCEECcCcCCHHHcCCCCCCCEEEE
Confidence            45999999999999 88 689999999999  99999999999999999 68999875

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.58  E-value=1.5e-15  Score=94.03  Aligned_cols=55  Identities=15%  Similarity=0.327  Sum_probs=51.5

Q ss_pred             Cc-ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 ME-VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 ve-v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++ |++++||++||++|++ ..++|+++|||.  ++|+.|+|+++|++||+++|++|++
T Consensus        18 l~~v~~~~tv~~lK~~i~~-~~gip~~~qrL~--~~g~~L~d~~tL~~~~i~~g~~i~l   73 (78)
T 2faz_A           18 VDSLSRLTKVEELRRKIQE-LFHVEPGLQRLF--YRGKQMEDGHTLFDYEVRLNDTIQL   73 (78)
T ss_dssp             EEEECTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTCBTTTTTCCTTCEEEE
T ss_pred             EeccCCCCCHHHHHHHHHH-HHCcChhhEEEE--ECCEECCCCCCHHHcCCCCCCEEEE
Confidence            35 8999999999999999 689999999998  8999999999999999999999985

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.58  E-value=2.7e-15  Score=94.09  Aligned_cols=58  Identities=21%  Similarity=0.296  Sum_probs=52.9

Q ss_pred             CcccCCCcHHHHHHHHHhHh--CCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731          1 MEVSGSFTVKDIKKEVHKAK--SQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~--~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD   60 (107)
                      ++|++++||++||++|+++.  .++++++|||+  ++|+.|+|+++|++||+++|++|++-.
T Consensus        20 ~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i~~g~~i~l~~   79 (85)
T 2wyq_A           20 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI--YAGKILSDDVPIRDYRIDEKNFVVVMV   79 (85)
T ss_dssp             EEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE--ETTEECCTTSBGGGGCCCTTSEEEEEE
T ss_pred             EEECCCCCHHHHHHHHHhhccccCCCHHHeEEE--ECCEECcCCCCHHHcCCCCCCEEEEEE
Confidence            47889999999999999931  79999999998  899999999999999999999998754

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.58  E-value=1.8e-15  Score=96.38  Aligned_cols=56  Identities=29%  Similarity=0.302  Sum_probs=52.4

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      ++|++++||++||++|++ ..++|+++|||+  ++|+.|+|+++|++|||++|++|++-
T Consensus        19 ~~v~~~~TV~~LK~~I~~-~~gip~~~qrL~--~~Gk~L~D~~tL~~~~I~~g~~i~l~   74 (88)
T 2hj8_A           19 YEVRLTQTVAHLKQQVSG-LEGVQDDLFWLT--FEGKPLEDQLPLGEYGLKPLSTVFMN   74 (88)
T ss_dssp             EEEESSSBHHHHHHHHHH-HTCSCTTTEEEE--SSSSCCCTTSBHHHHHCSTTCEEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HhCCChhHEEEE--ECCEECCCCCcHHHcCCCCCCEEEEE
Confidence            468899999999999999 699999999998  99999999999999999999999864

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.58  E-value=2.3e-16  Score=107.25  Aligned_cols=73  Identities=23%  Similarity=0.331  Sum_probs=11.0

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceE--EEeccCCcchhhhhhhhhhh
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV--FIKDLGPQIGWSTVFMAEYA   76 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL--~vKDlGpQi~wrtVf~~EY~   76 (107)
                      ++|++++||++||++|++ ..++|+++|||.  ++|+.|+|++||++|||++|++|  +++..|..+.|....++++.
T Consensus        15 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~~~sl~~la~k~   89 (128)
T 3u5e_m           15 LEVESSDTIDNVKSKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKY   89 (128)
T ss_dssp             -----------------------------------------------------------------CCCHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHH-HhCcChHHEEEE--ECCEECCCCCchhhhccCCCCEEEEEEEcCCCCCChhHHHHHHHh
Confidence            578999999999999999 689999999998  99999999999999999999976  48899999999998888764

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.57  E-value=1.8e-15  Score=96.50  Aligned_cols=55  Identities=20%  Similarity=0.398  Sum_probs=51.4

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ ..++|+++|||.  ++|+.|+|++||++|||++|++|++
T Consensus        15 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i~~g~~l~l   69 (88)
T 4fbj_B           15 IDIEPTDKVERIKERVEE-KEGIPPQQQRLI--YSGKQMNDEKTAADYKILGGSVLHL   69 (88)
T ss_dssp             EECCTTCBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCTTSBTTTTTCCTTCEEEE
T ss_pred             EEECCCCCHHHHHHHHHH-HHCcChhHEEEE--ECCeECCCCCcHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999998874

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.57  E-value=1.6e-15  Score=102.92  Aligned_cols=70  Identities=17%  Similarity=0.243  Sum_probs=58.6

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCC-------CceEE--EeccCCcchhhhhh
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKN-------GDMVF--IKDLGPQIGWSTVF   71 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~-------g~tL~--vKDlGpQi~wrtVf   71 (107)
                      +++++++||.+||++|++ +.|+|+++|||+  ++||.|+|++||++|||++       ++||+  ++ +|  =.|-.+.
T Consensus        16 ldve~sdTV~~lK~kI~~-~~giPp~qQrLI--~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr-~~--~~fE~l~   89 (118)
T 4ajy_B           16 TDAKESSTVFELKRIVEG-ILKRPPDEQRLY--KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR-AD--DTFEALC   89 (118)
T ss_dssp             EEEETTSBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC-CS--SCCCCCC
T ss_pred             EEcCCCChHHHHHHHHHH-HHCCCHHHeEEE--eCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe-cC--CCccceE
Confidence            478999999999999999 689999999998  9999999999999999999       99886  44 33  2455555


Q ss_pred             hhhhh
Q psy12731         72 MAEYA   76 (107)
Q Consensus        72 ~~EY~   76 (107)
                      +..|-
T Consensus        90 i~p~s   94 (118)
T 4ajy_B           90 IEPFS   94 (118)
T ss_dssp             BCCCC
T ss_pred             EecCC
Confidence            55443

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.57  E-value=2.8e-15  Score=97.17  Aligned_cols=56  Identities=20%  Similarity=0.266  Sum_probs=52.0

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCc-chhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~-ktL~~~gi~~g~tL~vK   59 (107)
                      ++|++++||++||++|++ ..++|+++|||+  ++|+.|+|+ +||++|||++|++|++-
T Consensus        29 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~~tL~~ygI~~gstl~lv   85 (94)
T 2kan_A           29 VEVDRTETVSSLKDKIHI-VENTPIKRMQLY--YSGIELADDYRNLNEYGITEFSEIVVF   85 (94)
T ss_dssp             EEECTTCBHHHHHHHHHH-HSSSCTTTEEEE--ETTEEECCTTSBHHHHTCCTTEEEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcCHHHEEEE--ECCEECCCCcccHHHCCCCCCCEEEEE
Confidence            478999999999999999 699999999998  999999999 99999999999998753

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.57  E-value=3.1e-15  Score=91.28  Aligned_cols=55  Identities=20%  Similarity=0.398  Sum_probs=51.0

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..++++++|||.  ++|+.|+|+++|++||+++|++|++
T Consensus        15 ~~v~~~~tv~~lK~~i~~-~~~i~~~~q~L~--~~g~~L~d~~tL~~~~i~~g~~i~l   69 (76)
T 1ndd_A           15 IDIEPTDKVERIKERVEE-KEGIPPQQQRLI--YSGKQMNDEKTAADYKILGGSVLHL   69 (76)
T ss_dssp             EECCTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             EEECCCChHHHHHHHHHH-HHCcChHHEEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence            468899999999999999 689999999998  8999999999999999999998763

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.56  E-value=3.1e-15  Score=98.17  Aligned_cols=60  Identities=28%  Similarity=0.405  Sum_probs=54.8

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEeccCC
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGP   63 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlGp   63 (107)
                      ++|++++||++||++|++ ..++++++|||.  ++|+.|+|+++|++|||++|++|++-.-.|
T Consensus        42 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~P  101 (101)
T 3m63_B           42 VNVAPESTVLQFKEAINK-ANGIPVANQRLI--YSGKILKDDQTVESYHIQDGHSVHLVKSQP  101 (101)
T ss_dssp             BCCCTTSBHHHHHHHHHH-HHSCCSTTCCEE--ETTEECCTTSBTTTTTCCTTEEEEECCCC-
T ss_pred             EEeCCCCCHHHHHHHHHH-HHCcChHHEEEE--ECCEECCCcCcHHHCCCCCCCEEEEEeCCC
Confidence            478999999999999999 589999999998  999999999999999999999999876554

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.56  E-value=3.6e-15  Score=97.90  Aligned_cols=54  Identities=20%  Similarity=0.254  Sum_probs=50.2

Q ss_pred             cccCCCcHHHHHHHH-HhHhCCCCccceeEEeccCCeecCCcchhhhcCC-CCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEV-HKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGL-KNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I-~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi-~~g~tL~v   58 (107)
                      +|++++||++||++| ++ .+|+++++|||+  ++|+.|+|+++|++||| ++|++|++
T Consensus        37 ~v~~~~TV~~lK~~I~~~-~~gip~~~QrLi--~~Gk~L~D~~tL~dy~I~~~g~ti~l   92 (98)
T 4a20_A           37 DFSPSDTILQIKQHLISE-EKASHISEIKLL--LKGKVLHDNLFLSDLKVTPANSTITV   92 (98)
T ss_dssp             EECTTCBHHHHHHHHHHT-TSCSCGGGEEEE--ETTEEECTTCBGGGSCCBTTBCEEEE
T ss_pred             ecCCCChHHHHHHHHHHH-hcCCChhhEEEE--ECCEECcCcCCHHHcCcCCCCCEEEE
Confidence            567999999999999 76 689999999998  99999999999999999 99999875

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.56  E-value=3.3e-15  Score=95.49  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=51.8

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||.+||++|++ ..|+++++|||.  ++|+.|+|+++|++|||++|++|++
T Consensus        32 l~v~~~~TV~~LK~~I~~-~~gip~~~qrL~--~~Gk~L~D~~tL~~~gi~~g~~i~l   86 (91)
T 3v6c_B           32 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL   86 (91)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCTTCBTGGGTCCTTCEEEE
T ss_pred             EEECCCCCHHHHHHHHHh-hhCCChhhEEEE--ECCeECCCcCcHHHCCCCCCCEEEE
Confidence            468899999999999999 689999999998  9999999999999999999999985

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=3.9e-15  Score=92.30  Aligned_cols=55  Identities=20%  Similarity=0.266  Sum_probs=51.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..++++++|||.  ++|+.|+|+++|++||+++|++|++
T Consensus        22 ~~v~~~~tV~~LK~~i~~-~~~i~~~~qrL~--~~gk~L~d~~tL~~~~i~~g~~i~l   76 (81)
T 2dzi_A           22 LQVPEDELVSTLKQLVSE-KLNVPVRQQRLL--FKGKALADGKRLSDYSIGPNSKLNL   76 (81)
T ss_dssp             EEECSSCBHHHHHHHHHH-HTCCCTTTCEEE--ETTEECCTTSBGGGGTCCSSBCCEE
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcCHHHEEEE--ECCeECCCCCcHHHcCCCCCCEEEE
Confidence            468899999999999999 689999999998  8999999999999999999999875

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.56  E-value=3.4e-15  Score=93.98  Aligned_cols=55  Identities=20%  Similarity=0.398  Sum_probs=51.6

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||.+||++|++ ..++|+++|||.  ++|+.|+|+++|++|||++|++|++
T Consensus        27 ~~v~~~~tV~~lK~~i~~-~~gip~~~qrL~--~~G~~L~d~~tL~~~~i~~~~~i~l   81 (88)
T 3dbh_I           27 IDIEPTDKVERIKERVEE-KEGIPPQQQRLI--YSGKQMNDEKTAADYKILGGSVLHL   81 (88)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHCCCGGGCCEE--ETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             EEECCCCCHHHHHHHHHH-HHCcCHHHEEEE--ECCeECCCCCcHHHcCCCCCCEEEE
Confidence            468899999999999999 589999999998  9999999999999999999999875

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.56  E-value=5.9e-15  Score=95.30  Aligned_cols=58  Identities=22%  Similarity=0.352  Sum_probs=52.6

Q ss_pred             CcccCCCcHHHHHHHHHhHh--CCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731          1 MEVSGSFTVKDIKKEVHKAK--SQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~--~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD   60 (107)
                      ++|++++||++||++|+++.  .|+++++|||+  ++|+.|+|+++|++|||++|++|++-.
T Consensus        15 ~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi--~~Gk~L~D~~tL~~ygI~~g~~i~l~~   74 (95)
T 1uel_A           15 IDIDPEETVKALKEKIESEKGKDAFPVAGQKLI--YAGKILNDDTALKEYKIDEKNFVVVMV   74 (95)
T ss_dssp             EECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE--ETTEECCTTSBGGGGTCCSSSEEEEEE
T ss_pred             EEECCCCHHHHHHHHHHhhcccCCCChhhEEEE--ECCEECCCcCcHHHCCCCCCCEEEEEE
Confidence            47889999999999999932  78999999998  899999999999999999999998654

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.56  E-value=3.3e-15  Score=93.39  Aligned_cols=55  Identities=25%  Similarity=0.492  Sum_probs=51.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||.+||++|++ ..++|+++|||.  ++|+.|+|++||++|+|+++++|++
T Consensus        18 ~~v~~~~tV~~lK~~i~~-~~~ip~~~qrL~--~~g~~L~d~~tL~~~~i~~~~~i~l   72 (85)
T 3n3k_B           18 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIHNHSALYL   72 (85)
T ss_dssp             EECCTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETBEECCTTCBTTTTTCCTTCEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HHCCCHHHEEEE--ECCeECCCCCCHHHCCCCCCCEEEE
Confidence            468899999999999999 589999999998  8999999999999999999998874

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.56  E-value=3.3e-15  Score=95.00  Aligned_cols=56  Identities=27%  Similarity=0.472  Sum_probs=52.4

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      +++++++||++||++|++ ..++|+++|||.  ++|+.|+|+++|++|||++|++|++-
T Consensus        26 l~v~~~~TV~~LK~~I~~-~~gip~~~qrL~--~~Gk~L~D~~tL~~~gi~~g~~l~l~   81 (85)
T 2kd0_A           26 LSVSPDCTVKDLKSQLQP-ITNVLPRGQKLI--FKGKVLVETSTLKQSDVGSGAKLMLM   81 (85)
T ss_dssp             EEECTTSBHHHHHHHHHH-HHCCCTTTCEEE--ETTEECCTTCBTTTTTCCTTEEEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcChHHEEEE--ECCeECCCcCCHHHCCCCCCCEEEEE
Confidence            478899999999999999 689999999998  99999999999999999999999874

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.55  E-value=5.6e-15  Score=94.85  Aligned_cols=54  Identities=17%  Similarity=0.311  Sum_probs=50.0

Q ss_pred             cccCCCcHHHHHHHHHhHhC--CCCccceeEEeccCCeecCCcchhhhc--CCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKS--QLYPDRQAVRLEIKGKILKDSDDVKSL--GLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~--~i~~~rQrL~l~~~Gk~L~D~ktL~~~--gi~~g~tL~v   58 (107)
                      ++++++||++||++|++ ..  ++++++|||+  ++|+.|+|+++|++|  +|+++++||+
T Consensus        25 ~v~~~~TV~~lK~~I~~-~~~~~i~~~~QrLi--~~Gk~L~D~~tL~~~~~~i~~~~~i~l   82 (93)
T 1wgd_A           25 SGDRGWSVGHLKAHLSR-VYPERPRPEDQRLI--YSGKLLLDHQCLRDLLPKQEKRHVLHL   82 (93)
T ss_dssp             ECCTTSCHHHHHHHHHH-HSTTCCCTTTCEEE--ETTEECCSSSCHHHHSCSSSCSEEEEE
T ss_pred             ecCCCCcHHHHHHHHHH-HhcCCCChHHeEEE--ECCEECcCcCCHHHHhcCCCCCCEEEE
Confidence            46699999999999999 56  9999999998  999999999999999  9999999874

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.55  E-value=3.8e-15  Score=99.19  Aligned_cols=56  Identities=25%  Similarity=0.380  Sum_probs=51.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCC-CCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGL-KNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi-~~g~tL~vK   59 (107)
                      ++|+|++||++||++|++ +.|+|+++|||+  ++|+.++|++||++||| ++|+++|+-
T Consensus        41 l~V~ps~TV~~LK~~I~~-k~Gipp~~QRli--~ggkll~D~~TL~~ygI~~~G~t~hL~   97 (105)
T 4dbg_A           41 LTVRPDMTVASLKDMVFL-DYGFPPVLQQWV--IGQRLARDQETLHSHGVRQNGDSAYLY   97 (105)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEEECTTCBTGGGTCCSTTCEEEEE
T ss_pred             EEECCcChHHHHHHHHHH-HhCCCHHHEEEe--ccCeEccCcCcHHHcCCCCCCCEEEEE
Confidence            478999999999999999 589999999987  89998899999999999 599998853

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.55  E-value=3.2e-15  Score=101.43  Aligned_cols=72  Identities=17%  Similarity=0.261  Sum_probs=61.0

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCC-------CCceEE--EeccCCcchhhhhh
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLK-------NGDMVF--IKDLGPQIGWSTVF   71 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~-------~g~tL~--vKDlGpQi~wrtVf   71 (107)
                      ++|++++||++||++|++ ++|+|+++|||+  ++||.|+|++||++|||+       +++||+  ++ .|-  .|-.+.
T Consensus        16 lev~~sdTV~~lK~kI~~-~egIP~~qQrLi--~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr-~~g--~fe~l~   89 (118)
T 2fnj_B           16 TDAKESSTVFELKRIVEG-ILKRPPEEQRLY--KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR-ADD--TFEALR   89 (118)
T ss_dssp             EEEETTSBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB-SSS--CBCCCC
T ss_pred             EEeCCcChHHHHHHHHHH-HhCCCHHHeEEE--ECCeECCCCCCHHHcCcccccccCCCCCEEEEEec-CCC--ceeeeE
Confidence            478999999999999999 699999999998  999999999999999999       688775  67 433  466777


Q ss_pred             hhhhhhh
Q psy12731         72 MAEYAGP   78 (107)
Q Consensus        72 ~~EY~GP   78 (107)
                      +..|--|
T Consensus        90 i~~~s~p   96 (118)
T 2fnj_B           90 IEPFSSP   96 (118)
T ss_dssp             BCCCCCC
T ss_pred             EecCCCC
Confidence            6666544

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.55  E-value=5.3e-15  Score=96.83  Aligned_cols=58  Identities=22%  Similarity=0.386  Sum_probs=53.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCc-chhhhcCCCCCceEEEecc
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDVKSLGLKNGDMVFIKDL   61 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~-ktL~~~gi~~g~tL~vKDl   61 (107)
                      ++|++++||++||++|++ ..++++++|||+  ++|+.|+|+ +||++|||++|++|++..-
T Consensus        26 i~v~~~~TV~~LK~~I~~-~~gip~~~qrL~--~~gk~L~D~~~tL~~ygI~~g~~l~l~~~   84 (102)
T 1v5o_A           26 LQVNPDFELSNFRVLCEL-ESGVPAEEAQIV--YMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             EEECTTCBHHHHHHHHHH-HTCCCGGGBCEE--ETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             EEcCCCCCHHHHHHHHHH-HHCcChHHeEEE--ECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence            468999999999999999 699999999998  899999887 7999999999999998754

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.55  E-value=6e-15  Score=97.37  Aligned_cols=57  Identities=26%  Similarity=0.378  Sum_probs=52.9

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD   60 (107)
                      ++|++++||.+||++|++ ..++++++|||+  ++|+.|+|+++|++|||++|++|++--
T Consensus        16 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~~~i~~g~~i~lv~   72 (106)
T 3m62_B           16 LDLEPSNTILETKTKLAQ-SISCEESQIKLI--YSGKVLQDSKTVSECGLKDGDQVVFMV   72 (106)
T ss_dssp             ECCCTTSBHHHHHHHHHH-TTTSCGGGCEEE--ETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred             EEECCCCcHHHHHHHHHH-HHCCChhhEEEE--ECCEECCCcCCHHHcCCCCCCEEEEEE
Confidence            478999999999999999 689999999998  999999999999999999999998653

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.55  E-value=3.4e-15  Score=92.67  Aligned_cols=55  Identities=16%  Similarity=0.310  Sum_probs=51.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ +.++|+++|||.  |+|+.|+|++|+++||+++|++|++
T Consensus        18 ~~v~~~~tv~~lk~~i~~-~~gi~~~~qrL~--~~G~~L~d~~tl~~~~i~~~~~i~l   72 (79)
T 2uyz_B           18 FKVKMTTHLKKLKESYCQ-RQGVPMNSLRFL--FEGQRIADNHTPKELGMEEEDVIEV   72 (79)
T ss_dssp             EEEETTSCTHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTCCHHHHTCCTTEEEEE
T ss_pred             EEECCCChHHHHHHHHHH-HHCCCcccEEEE--ECCEEeCCCCCHHHcCCCCCCEEEE
Confidence            468899999999999999 689999999998  9999999999999999999999874

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.54  E-value=4.9e-15  Score=95.54  Aligned_cols=55  Identities=27%  Similarity=0.374  Sum_probs=51.6

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ ..++|+++|||+  ++|+.|+|+++|++|||++|++|++
T Consensus        32 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~y~I~~gstI~l   86 (93)
T 2l7r_A           32 FEVTGQETVAQIKAHVAS-LEGIAPEDQVVL--LAGAPLEDEATLGQCGVEALTTLEV   86 (93)
T ss_dssp             EECCSSCBHHHHHHHHHH-HHTCCGGGCEEE--ETTEECCTTSBHHHHTCCSSCEEEE
T ss_pred             EEeCCCCcHHHHHHHHHH-HhCcChhHEEEE--ECCEECCCCCcHHHCCCCCCCEEEE
Confidence            478999999999999999 689999999998  8999999999999999999999875

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.54  E-value=5.4e-15  Score=94.27  Aligned_cols=55  Identities=22%  Similarity=0.432  Sum_probs=51.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..++|+++|||.  ++|+.|+|++||++||+++|++|++
T Consensus        24 l~v~~~~TV~~LK~~I~~-~~gip~~~qrL~--~~Gk~L~D~~tL~~~gi~~g~~i~l   78 (88)
T 1sif_A           24 VEMEPSDTIENLKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL   78 (88)
T ss_dssp             EECCTTSBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCTTSBSGGGTCCTTCEEEE
T ss_pred             EEECCCChHHHHHHHHHH-HHCcChhhEEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence            478899999999999999 689999999998  8999999999999999999998764

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.54  E-value=6.7e-15  Score=89.78  Aligned_cols=55  Identities=24%  Similarity=0.449  Sum_probs=51.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..++++++|||.  ++|+.|+|+++|++||+++|++|++
T Consensus        15 i~v~~~~tv~~lK~~i~~-~~~i~~~~q~L~--~~g~~L~d~~tL~~~~i~~g~~i~l   69 (76)
T 3a9j_A           15 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQRESTLHL   69 (76)
T ss_dssp             EECCTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTCBTGGGTCCTTCEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcCHHHeEEE--ECCeECCCCCcHHHcCCCCCCEEEE
Confidence            468899999999999999 589999999998  8999999999999999999998874

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.54  E-value=5.2e-15  Score=93.67  Aligned_cols=54  Identities=17%  Similarity=0.460  Sum_probs=50.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..++|+++|||.  ++|+.|+|+++|++||+ +|++||+
T Consensus        32 ~~v~~~~tV~~lK~~i~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i-~g~~i~l   85 (88)
T 4eew_A           32 FIVGAQMNVKEFKEHIAA-SVSIPSEKQRLI--YQGRVLQDDKKLQEYNV-GGKVIHL   85 (88)
T ss_dssp             EEEETTCBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTSBGGGGTC-TTEEEEE
T ss_pred             EEECCCCCHHHHHHHHHH-HhCCCHHHEEEE--ECCEECCCCCcHHHcCC-CCcEEEE
Confidence            468899999999999999 589999999998  99999999999999999 8999985

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=4e-15  Score=100.87  Aligned_cols=56  Identities=20%  Similarity=0.291  Sum_probs=52.0

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      +++++++||++||+++++ ..++|+++|||+  |+||.|+|++||++|||++|.|||+-
T Consensus        31 v~v~~d~TV~dLKe~ls~-~~~iP~e~qrLI--y~GKiLKD~eTL~~~gIk~g~TIhLv   86 (118)
T 2daf_A           31 IPFKVDTILKYLKDHFSH-LLGIPHSVLQIR--YSGKILKNNETLVQHGVKPQEIVQVE   86 (118)
T ss_dssp             EEECSSSCSHHHHHHHHH-HHTCCTTTEEEE--ETTEEECSSCCHHHHSCCSSCEEEEE
T ss_pred             EEeCCCCcHHHHHHHHHh-hhCCChHHEEEE--ECCeEcCCcchHHHcCCCCCCEEEEE
Confidence            468899999999999999 589999999998  99999999999999999999999853

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.54  E-value=6.7e-15  Score=91.83  Aligned_cols=55  Identities=25%  Similarity=0.475  Sum_probs=51.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||.+||++|++ ..++|+++|||.  ++|+.|+|+++|++|+++++++|++
T Consensus        18 ~~v~~~~tV~~lK~~i~~-~~~i~~~~qrL~--~~g~~L~d~~tL~~~~i~~~~~l~l   72 (85)
T 3mtn_B           18 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKWSTLFL   72 (85)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             EEECCCCCHHHHHHHHHH-HHCcChHHEEEE--ECCEECCCCCCHHHcCCCCCCEEEE
Confidence            468899999999999999 589999999998  9999999999999999999998874

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.54  E-value=5.8e-15  Score=97.01  Aligned_cols=56  Identities=18%  Similarity=0.239  Sum_probs=50.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCC-ccceeEEeccCCeecCCcchhhhc--CCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLY-PDRQAVRLEIKGKILKDSDDVKSL--GLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~-~~rQrL~l~~~Gk~L~D~ktL~~~--gi~~g~tL~v   58 (107)
                      +++++++||++||++|+++.++.+ +++|||+  |+||.|+|++||++|  +|+++++|++
T Consensus        40 l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI--y~Gk~L~D~~tL~~y~~~I~~~~tihL   98 (99)
T 2kdb_A           40 ISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV--YSGRLLPDHLQLKDILRKQDEYHMVHL   98 (99)
T ss_dssp             EEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE--ETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred             EEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE--ECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence            367999999999999998446666 5999999  999999999999999  9999999986

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.54  E-value=9e-15  Score=93.79  Aligned_cols=56  Identities=25%  Similarity=0.326  Sum_probs=51.9

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEec-cCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE-IKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~-~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++++++||++||++|++ ..+++++||||+.. ++|+.|+|+++|++|||++|++|++
T Consensus        23 ~v~~~~TV~~lK~~I~~-~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l   79 (90)
T 1v5t_A           23 TLSEDDTVLDLKQFLKT-LTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMM   79 (90)
T ss_dssp             SCCSSSBHHHHHHHHHH-HTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEE
T ss_pred             EeCCCCCHHHHHHHHHH-HHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            78999999999999999 69999999998733 7899999999999999999999985

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.53  E-value=1.4e-14  Score=91.76  Aligned_cols=54  Identities=19%  Similarity=0.318  Sum_probs=50.5

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +|++++||++||++|++ ..++++++|||.  ++|+.|+|+++|++|||++|++|++
T Consensus        25 ~v~~~~tV~~lK~~i~~-~~gip~~~qrL~--~~gk~L~d~~tL~~~~i~~g~~i~l   78 (89)
T 1wy8_A           25 DVSRKATIEELRERVWA-LFDVRPECQRLF--YRGKQLENGYTLFDYDVGLNDIIQL   78 (89)
T ss_dssp             EECTTCBHHHHHHHHHH-HSCCCTTTEEEE--ETTEECCSSSBHHHHTCCTTCEEEE
T ss_pred             ecCCCCCHHHHHHHHHH-HHCcChhhEEEE--ECCeECCCCCCHHHCCCCCCCEEEE
Confidence            48999999999999999 689999999998  8999999999999999999998763

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.52  E-value=9.2e-15  Score=92.87  Aligned_cols=54  Identities=17%  Similarity=0.460  Sum_probs=50.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ ..++++++|||+  ++|+.|+|+++|++||| +|++||+
T Consensus        20 ~~v~~~~tV~~lK~~i~~-~~gip~~~qrLi--~~Gk~L~d~~tL~~~~i-~g~~i~l   73 (90)
T 4dwf_A           20 FIVGAQMNVKEFKEHIAA-SVSIPSEKQRLI--YQGRVLQDDKKLQEYNV-GGKVIHL   73 (90)
T ss_dssp             EEEETTCBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTSBGGGGTC-TTEEEEE
T ss_pred             EEECCCCCHHHHHHHHHH-HhCCCHHHEEEE--ECCeECCCCCCHHHcCC-CCcEEEE
Confidence            468899999999999999 589999999998  99999999999999999 8998874

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.52  E-value=1.1e-14  Score=93.30  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=51.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||.+||++|++ ..++++++|||.  ++|+.|+|++||++|||++|++|++
T Consensus        16 ~~v~~~~TV~~LK~~i~~-~~gip~~~qrL~--~~G~~L~d~~tL~~~~i~~~~~i~l   70 (96)
T 3k9o_B           16 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL   70 (96)
T ss_dssp             EECCTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             EEECCCCCHHHHHHHHHh-hhCCChhHEEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence            468899999999999999 589999999998  9999999999999999999998874

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.52  E-value=8.6e-15  Score=95.78  Aligned_cols=56  Identities=29%  Similarity=0.549  Sum_probs=52.0

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      ++|++++||++||++|++ ..++++++|||+  ++|+.|+|++||++|||++|++|++-
T Consensus        36 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~ygI~~gstI~l~   91 (100)
T 1yqb_A           36 FSVTDTCTIQQLKEEISQ-RFKAHPDQLVLI--FAGKILKDPDSLAQCGVRDGLTVHLV   91 (100)
T ss_dssp             EEEETTCBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTSBHHHHTCCTTCEEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcChhhEEEE--ECCEECCCcCcHHHCCCCCCCEEEEE
Confidence            478899999999999999 689999999998  89999999999999999999998754

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=9.5e-15  Score=94.81  Aligned_cols=55  Identities=24%  Similarity=0.463  Sum_probs=51.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||.+||++|++ ..++++++|||.  ++|+.|+|+++|++|||++|++|++
T Consensus        37 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i~~g~~i~l   91 (98)
T 4hcn_B           37 LEVESSDTIDNVKSKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL   91 (98)
T ss_dssp             EECCTTCBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCTTCBSGGGTCCTTEEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HhCCChhHEEEE--ECCEECCCCCcHHHCCCCCCCEEEE
Confidence            468899999999999999 689999999998  9999999999999999999998874

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.52  E-value=8.5e-15  Score=94.28  Aligned_cols=56  Identities=27%  Similarity=0.412  Sum_probs=52.0

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      ++|++++||++||++|++ ..++++++|||+  ++|+.|+|++||++|||++|++||+-
T Consensus        31 ~~v~~~~TV~~LK~~I~~-~~gip~~~qrL~--~~Gk~L~D~~tL~~~gi~~g~~i~l~   86 (96)
T 1wx8_A           31 FFLAENSNVRRFKKQISK-YLHCNADRLVLI--FTGKILRDQDILSQRGILDGSTVHVV   86 (96)
T ss_dssp             EEEETTCCHHHHHHHHHH-HTCSCTTTBCCE--ETTEECCTTSCHHHHTCCTTEEEECC
T ss_pred             EEECCCCCHHHHHHHHHH-HhCCCHHHEEEE--ECCEECCCcCCHHHCCCCCCCEEEEE
Confidence            468899999999999999 689999999998  89999999999999999999999753

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.52  E-value=1.3e-14  Score=94.63  Aligned_cols=59  Identities=10%  Similarity=0.152  Sum_probs=51.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCe---ec-CCcchhhhcCCCCCceEEEec
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK---IL-KDSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk---~L-~D~ktL~~~gi~~g~tL~vKD   60 (107)
                      +++++++||++||++|++ +.|+|+++|||.+...|+   .| +|+++|++|||++|++|++-|
T Consensus        32 ~~v~~~~TV~~LK~kI~~-~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD   94 (95)
T 2kjr_A           32 VKLAKDLTVAQLKTKLEI-LTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD   94 (95)
T ss_dssp             EEEETTCBHHHHHHHHHH-HHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred             EEeCccCHHHHHHHHHHH-HHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence            367899999999999999 699999999998432355   45 899999999999999999987

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.51  E-value=1.3e-14  Score=94.92  Aligned_cols=57  Identities=28%  Similarity=0.426  Sum_probs=52.7

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD   60 (107)
                      ++|++++||++||++|++ ..++++++|||+  ++|+.|+|+++|++|||++|++|++-.
T Consensus        39 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~~gI~~g~~I~l~~   95 (101)
T 2klc_A           39 FAVPENSSVQQFKEEISK-RFKSHTDQLVLI--FAGKILKDQDTLSQHGIHDGLTVHLVI   95 (101)
T ss_dssp             EEECSCCCHHHHHHHHHH-HHTCCGGGEEEE--ETTEEECTTCCTGGGTCCTTCEEEEEE
T ss_pred             EEECCCCCHHHHHHHHHH-HHCcChhhEEEE--ECCEECCCcCcHHHcCCCCCCEEEEEE
Confidence            478899999999999999 689999999998  899999999999999999999998654

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.51  E-value=1.2e-14  Score=95.26  Aligned_cols=60  Identities=23%  Similarity=0.281  Sum_probs=52.4

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCC---ee---c-CCcchhhhcCCCCCceEEEeccCC
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG---KI---L-KDSDDVKSLGLKNGDMVFIKDLGP   63 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~G---k~---L-~D~ktL~~~gi~~g~tL~vKDlGp   63 (107)
                      +++++++||++||++|++ +.|+|+++|||+  +.|   +.   | +|+++|++|||++|++|++-|.=|
T Consensus        31 ~~v~~~~TV~~LK~kIe~-~~Gip~~~QrLi--~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~~p   97 (97)
T 2kj6_A           31 ARFSPQMSVEAVKEKLWK-KCGTSVNSMALE--LYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLDP   97 (97)
T ss_dssp             EEECTTCCHHHHHHHHHH-HHCCCTTSEEEE--EECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEECCC
T ss_pred             EEeCCCChHHHHHHHHHH-HHCcCHHHeEEE--EecCCCcccceecCCcCCHHHCCCCCCCEEEEEeCCC
Confidence            368899999999999999 699999999998  544   43   4 889999999999999999998644

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.51  E-value=2.2e-14  Score=94.42  Aligned_cols=58  Identities=21%  Similarity=0.230  Sum_probs=53.7

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEecc
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL   61 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDl   61 (107)
                      ++|++++||++||++|++ ..|+++++|||+  ++|+.|+|+++|++|||++|++||+-.-
T Consensus        38 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~ygI~~g~ti~lv~~   95 (106)
T 1ttn_A           38 LVVRSTDTVFHMKRRLHA-AEGVEPGSQRWF--FSGRPLTDKMKFEELKIPKDYVVQVIVS   95 (106)
T ss_dssp             EEECTTSHHHHHHHHHHH-TTCCCSTTCEEE--ETTEECCTTSHHHHCCCSSSCEEEEECC
T ss_pred             EEeCCCCcHHHHHHHHHH-HHCcCcccEEEE--ECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            468899999999999999 699999999998  8999999999999999999999987653

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.51  E-value=1e-14  Score=94.86  Aligned_cols=54  Identities=30%  Similarity=0.412  Sum_probs=50.9

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||.+||++|++ ..+++++||||+  ++|+.|+|+ +|++|||++|++|++
T Consensus        22 l~v~~~~TV~~lK~~I~~-~tgip~~~QkLi--~~Gk~L~D~-tL~~~~I~~g~~i~l   75 (96)
T 1wgg_A           22 VELNTDEPPMVFKAQLFA-LTGVQPARQKVM--VKGGTLKDD-DWGNIKMKNGMTVLM   75 (96)
T ss_dssp             EEEESSSCHHHHHHHHHH-HTCCCTTTSCCE--ETTEECCSS-CCCSCCCCSSCEEEC
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcCHHHeEEE--ECCcCCCCC-CHHHCCCCCCCEEEE
Confidence            478899999999999999 699999999998  999999999 999999999999985

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.24  E-value=1.8e-15  Score=93.11  Aligned_cols=55  Identities=25%  Similarity=0.339  Sum_probs=51.4

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..++|+++|||.  ++|+.|+|+++|++||+++|++|++
T Consensus        15 ~~v~~~~tV~~lK~~i~~-~~gi~~~~qrL~--~~gk~L~d~~tL~~~~i~~g~~i~l   69 (76)
T 3b1l_X           15 VEVDSDTSILQLKEVVAK-QQGVPADQLRVI--FAGKELPNHLTVQNCDLEQQSIVHI   69 (76)
Confidence            478899999999999999 689999999998  9999999999999999999999874

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.49  E-value=2.6e-14  Score=95.57  Aligned_cols=62  Identities=23%  Similarity=0.382  Sum_probs=54.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE--eccC-Ccc
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI--KDLG-PQI   65 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v--KDlG-pQi   65 (107)
                      ++|++++||++||++|++ ..++|+++|||+  ++|+.|+|++||++|||++|++|++  +-.| .++
T Consensus        24 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~   88 (114)
T 2kdi_A           24 LEVESSDTIDNVKSKIQD-KEGIPPDQQRLI--WAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMG   88 (114)
T ss_dssp             EECCTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCC
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcChHHEEEE--ECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCcee
Confidence            478899999999999999 689999999998  8999999999999999999998864  4444 444

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.48  E-value=2.8e-14  Score=93.74  Aligned_cols=56  Identities=29%  Similarity=0.549  Sum_probs=51.9

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      ++|++++||.+||++|++ ..++++++|||+  ++|+.|+|+++|++|||++|++|++-
T Consensus        31 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~~gi~~g~~i~l~   86 (106)
T 1wx7_A           31 FSVTDTCTIQQLKEEISQ-RFKAHPDQLVLI--FAGKILKDPDSLAQCGVRDGLTVHLV   86 (106)
T ss_dssp             EEEETTCCHHHHHHHHHH-HHTCCTTTEEEE--ETTEECCTTSCHHHHTCCTTEEEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcChhhEEEE--ECCEECCCcCcHHHcCCCCCCEEEEE
Confidence            478899999999999999 689999999998  89999999999999999999998754

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.48  E-value=4.6e-14  Score=93.47  Aligned_cols=55  Identities=20%  Similarity=0.329  Sum_probs=51.2

Q ss_pred             CcccC-CCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSG-SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~-~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++ ++||++||++|++ ..++|+++|||.  ++|+.|+|+++|++|||++|++|++
T Consensus        45 l~v~~l~~TV~~LK~~I~~-~~gip~~~QrL~--~~Gk~L~D~~tL~~y~I~~g~~l~l  100 (111)
T 1we6_A           45 ITVQSLSENVGSLKEKIAG-EIQIPANKQKLS--GKAGFLKDNMSLAHYNVGAGEILTL  100 (111)
T ss_dssp             EEESCSSSBHHHHHHHHHH-HTTCCTTTSEEE--CSSSBCCTTSBTTTTTCSSSCEEEE
T ss_pred             EEecCCCCcHHHHHHHHHH-HHCCCHHHeEEE--ECCEECCCCCcHHHCCCCCCCEEEE
Confidence            46787 9999999999999 699999999998  8999999999999999999998874

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.48  E-value=2.5e-14  Score=92.86  Aligned_cols=55  Identities=16%  Similarity=0.310  Sum_probs=51.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ +.++++++|||+  |+|+.|+|++||++|++++|++|++
T Consensus        36 l~v~~~~tv~~lK~~i~~-~~gip~~~qrLi--f~Gk~L~d~~tl~dy~i~~g~~I~l   90 (97)
T 1wyw_B           36 FKVKMTTHLKKLKESYCQ-RQGVPMNSLRFL--FEGQRIADNHTPKELGMEEEDVIEV   90 (97)
T ss_dssp             EEEETTSCTHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTCCHHHHTCCTTCEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HHCCChhhEEEE--ECCeEcCCCCCHHHCCCCCCCEEEE
Confidence            468899999999999999 689999999998  9999999999999999999999874

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.48  E-value=3.7e-14  Score=94.57  Aligned_cols=55  Identities=18%  Similarity=0.370  Sum_probs=51.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||.+||++|++ ..++++++|||+  ++|+.|+|+++|++|||++|++|++
T Consensus        50 l~v~~~~TV~~LK~~I~~-~~gip~~~QrL~--~~Gk~L~D~~tL~~y~i~~g~~i~l  104 (115)
T 1we7_A           50 FTLPLTDQVSVIKVKIHE-ATGMPAGKQKLQ--YEGIFIKDSNSLAYYNMASGAVIHL  104 (115)
T ss_dssp             EEECSCSBTHHHHHHHHH-HSSCCTTTEEEE--ETTEEECTTSBHHHHTCCSSCEEEE
T ss_pred             EEECCCCCHHHHHHHHHH-HHCCChHHEEEE--ECCEECCCCCCHHHCCCCCCCEEEE
Confidence            468899999999999999 699999999998  8999999999999999999998874

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.47  E-value=5.1e-14  Score=95.70  Aligned_cols=56  Identities=27%  Similarity=0.424  Sum_probs=51.9

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      ++|++++||.+||++|++ ..++++++|||+  ++|+.|+|++||++|||++|++|++-
T Consensus        46 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~dygI~~gstI~lv  101 (125)
T 1j8c_A           46 FAVPENSSVQQFKEAISK-RFKSQTDQLVLI--FAGKILKDQDTLIQHGIHDGLTVHLV  101 (125)
T ss_dssp             EEECTTCCHHHHHHHHHH-HHCSCSSSEEEE--ETTEEESTTSCGGGTTCSSSEEEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcCcceEEEE--ECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            478899999999999999 689999999998  89999999999999999999998754

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.46  E-value=8.6e-14  Score=89.00  Aligned_cols=56  Identities=25%  Similarity=0.364  Sum_probs=50.3

Q ss_pred             cccC-----CCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCC-cchhhhcCCCCCceEEEec
Q psy12731          2 EVSG-----SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD-SDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         2 ev~~-----~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D-~ktL~~~gi~~g~tL~vKD   60 (107)
                      ++++     ++||.+||++|++ ..++++++|||+  ++|+.|+| +++|++|||++|++|++-+
T Consensus        22 ~v~~~~~~~~~TV~~LK~~i~~-~~gip~~~qrL~--~~Gk~L~D~~~~L~~~~i~~g~~i~l~~   83 (92)
T 1wxv_A           22 HVTSQQGSSEPVVQDLAQVVEE-VIGVPQSFQKLI--FKGKSLKEMETPLSALGIQDGCRVMLIG   83 (92)
T ss_dssp             EECCCSSSSSCBHHHHHHHHHH-HTCCCTTTCEEE--ETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred             EECCCcCcccCcHHHHHHHHHH-HHCcCHHHEEEE--ECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence            5666     4999999999999 689999999998  89999988 6689999999999998765

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.46  E-value=1.3e-14  Score=96.54  Aligned_cols=56  Identities=27%  Similarity=0.373  Sum_probs=48.7

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCcc---------------ceeEEeccCCeecC-CcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPD---------------RQAVRLEIKGKILK-DSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~---------------rQrL~l~~~Gk~L~-D~ktL~~~gi~~g~tL~vK   59 (107)
                      |+|++++||++||++|++ +.+++++               +|||+  ++|+.|+ |++||++|||++|++|+|.
T Consensus        22 v~V~~~~TV~dLK~~I~~-~~~i~~~~q~g~~~isw~~~w~q~~Li--~~Gk~L~dD~~tL~dygI~~g~~l~lv   93 (105)
T 1v2y_A           22 VVVVQNATVLDLKKAIQR-YVQLKQEREGGVQHISWSYVWRTYHLT--SAGEKLTEDRKKLRDYGIRNRDEVSFI   93 (105)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHHHHHHHTTCCCCCCHHHHHTTEEEE--SSSCEECCSSSBHHHHTCCSSEEEEEE
T ss_pred             EEECCCChHHHHHHHHHH-HhCCCcccccCcceeeeeecceeEEEE--eCCcCccCCcCCHHHcCCCCCCEEEEE
Confidence            578999999999999999 5788875               45877  9999996 6799999999999999853

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.46  E-value=3.6e-14  Score=91.93  Aligned_cols=56  Identities=20%  Similarity=0.361  Sum_probs=50.9

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD   60 (107)
                      +++++++||++||++|++ ..++++++|||.  ++|+.| |+.+|++|||++|++|++-+
T Consensus        31 i~v~~~~TV~~LK~~I~~-~tgip~~~QrL~--~~Gk~L-dd~tL~~~~i~~g~~i~lv~   86 (95)
T 1v86_A           31 VKVPLDSTGSELKQKIHS-ITGLPPAMQKVM--YKGLVP-EDKTLREIKVTSGAKIMVVG   86 (95)
T ss_dssp             EEECTTSBHHHHHHHHHH-HHCSCSTTCCCB--SSSBCC-SSSBHHHHCCCTTEEEEECC
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcCHHHeEEE--ECCeeC-CcCcHHHCCCCCCCEEEEEe
Confidence            478999999999999999 689999999998  999999 55599999999999998754

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.46  E-value=1.2e-13  Score=91.14  Aligned_cols=56  Identities=20%  Similarity=0.270  Sum_probs=50.8

Q ss_pred             cccCC-CcHHHHHHHHHhHhC--CCCccc-eeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731          2 EVSGS-FTVKDIKKEVHKAKS--QLYPDR-QAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         2 ev~~~-~TV~~LK~~I~~~~~--~i~~~r-QrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD   60 (107)
                      +|+++ +||.+||++|++ ..  ++++++ |||+  ++|+.|+|+++|++||+++|++|++-.
T Consensus        39 ~v~~~~~TV~~LK~~i~~-~~~~gip~~~~qrLi--~~Gk~L~D~~tL~~y~i~~g~~i~lv~   98 (107)
T 1x1m_A           39 EYSLGGYSISFLKQLIAG-KLQESVPDPELIDLI--YCGRKLKDDQTLDFYGIQPGSTVHVLR   98 (107)
T ss_dssp             SSCCCCCBHHHHHHHHHH-HCTTTCCCSSSEEEE--ETTEECCTTCBHHHHTCCTTCEEEEEE
T ss_pred             ccCcccCCHHHHHHHHHH-HhccCCChhhcEEEE--ECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            36676 999999999999 57  999999 9998  999999999999999999999998643

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.45  E-value=6.2e-14  Score=93.13  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=51.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||.+||++|++ ..++|+++|||.  ++|+.|+|+++|++|||++|++|++
T Consensus        50 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~~gI~~gs~I~l  104 (111)
T 3vdz_A           50 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL  104 (111)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBTTTTTCCTTCEEEE
T ss_pred             EEeCCCCCHHHHHHHHHH-HhCCChHHEEEE--ECCEECCCCCcHHHCCCCCCCEEEE
Confidence            468899999999999999 589999999998  9999999999999999999998874

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.45  E-value=8e-14  Score=96.60  Aligned_cols=55  Identities=29%  Similarity=0.303  Sum_probs=51.6

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ ..|+|+++|||.  ++|+.|+|++||++|||++|++|++
T Consensus        96 ~~v~~~~tV~~lK~~i~~-~~gip~~~q~L~--~~G~~L~d~~tL~~y~i~~g~~l~l  150 (159)
T 3rt3_B           96 YEVRLTQTVAHLKQQVSG-LEGVQDDLFWLT--FEGKPLEDQLPLGEYGLKPLSTVFM  150 (159)
T ss_dssp             EEECTTSBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             EEeCCCCCHHHHHHHHHH-HHCCCHHHEEEE--ECCeecCCCCCHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999999874

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.45  E-value=9.4e-14  Score=88.21  Aligned_cols=59  Identities=14%  Similarity=0.304  Sum_probs=53.0

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC---CcchhhhcCCCCCceEEEeccC
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK---DSDDVKSLGLKNGDMVFIKDLG   62 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~---D~ktL~~~gi~~g~tL~vKDlG   62 (107)
                      +++++||.+||++|++ +.++++++|||...+.+|.|+   |+++|++|||++|++|+++|-.
T Consensus        17 l~~~~Tv~~Lk~~I~~-~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~   78 (86)
T 2kzr_A           17 LSSRTRLRELQGQIAA-ITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ   78 (86)
T ss_dssp             CCTTCBHHHHHHHHHH-HTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred             cCCCCCHHHHHHHHHH-HhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence            8899999999999999 689999999998666678884   6889999999999999999864

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=91.82  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=51.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ ..++++++|||.  ++|+.|+|+++|++||+++|++|++
T Consensus        50 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~~gI~~gs~I~l  104 (111)
T 2ojr_A           50 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL  104 (111)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHCCCTTTEEEE--ETTEECCSSCBTTTTTCCTTCEEEE
T ss_pred             EEeCCCCCHHHHHHHHHH-HHCcCcccEEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence            468899999999999999 589999999998  8999999999999999999999874

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.43  E-value=1.3e-13  Score=97.95  Aligned_cols=55  Identities=24%  Similarity=0.463  Sum_probs=51.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ ..++|+++|||.  ++|+.|+|+++|++|||++|++||+
T Consensus        15 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~y~I~~gstI~L   69 (169)
T 3l0w_B           15 LEVESSDTIDNVKSKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL   69 (169)
T ss_dssp             EECCTTCBHHHHHHHHHH-HHCCCTTTEEEE--ETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             EEeCCCCCHHHHHHHHHH-HHCcCHHHEEEE--ECCccccCcCcHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999998874

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.43  E-value=1.4e-13  Score=94.32  Aligned_cols=51  Identities=22%  Similarity=0.191  Sum_probs=44.9

Q ss_pred             CcccCCCcHHHHHHHHHhH----hCCCCc--cceeEEeccCCeecCCcchhhhcCCCCC
Q psy12731          1 MEVSGSFTVKDIKKEVHKA----KSQLYP--DRQAVRLEIKGKILKDSDDVKSLGLKNG   53 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~----~~~i~~--~rQrL~l~~~Gk~L~D~ktL~~~gi~~g   53 (107)
                      ++++|++||++||++|++.    ++++|+  ++|||+  |+||.|+|++||++|+|++|
T Consensus        32 l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI--y~GK~LeD~~TLsdy~I~~~   88 (126)
T 1se9_A           32 KAFPDATTVSALKETVISEWPREKENGPKTVKEVKLI--SAGKVLENSKTVKDYRSPVS   88 (126)
T ss_dssp             EEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE--ETTEECCTTSBGGGGSCCTT
T ss_pred             eecCccCHHHHHHHHHHhhcccccccCCCChhhEEEE--ECCeECcCCCcHHHcCCCcC
Confidence            3678999999999999431    567886  899998  99999999999999999988

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1.3e-13  Score=90.80  Aligned_cols=59  Identities=24%  Similarity=0.325  Sum_probs=50.4

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE--Eecc
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF--IKDL   61 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~--vKDl   61 (107)
                      |+|++++||++||++|++ +.|+||+||||..-..|+ |+|+++|++|+|++|++||  +.|+
T Consensus        23 v~v~~~~TV~~LK~~I~~-~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~   83 (100)
T 2dzm_A           23 VVLEDTCTVGEIKQILEN-ELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL   83 (100)
T ss_dssp             EEEETTSBHHHHHHHHHH-HHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred             EEECCCCcHHHHHHHHHH-HHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence            478999999999999999 699999999996212566 9999999999999999886  4555

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.40  E-value=2.1e-13  Score=90.06  Aligned_cols=58  Identities=21%  Similarity=0.291  Sum_probs=51.9

Q ss_pred             Cccc-CCCcHHHHHHHHHhHhCCCCccceeEEeccCCe-----------e----cCCcchhhhcCCCCCceEEEecc
Q psy12731          1 MEVS-GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK-----------I----LKDSDDVKSLGLKNGDMVFIKDL   61 (107)
Q Consensus         1 vev~-~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk-----------~----L~D~ktL~~~gi~~g~tL~vKDl   61 (107)
                      |+|+ +++||.+||++|++ +.++++++|||+  +.|+           .    ++|++||++|||++|++||+.+.
T Consensus        21 v~v~~~~~Tv~~LK~kI~~-~~gip~~~QrL~--~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~   94 (107)
T 1wf9_A           21 VSVDGPHITVSQLKTLIQD-QLQIPIHNQTLS--TNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYE   94 (107)
T ss_dssp             EEECCTTSBHHHHHHHHHH-HSCCCTTTCCCB--SSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCS
T ss_pred             EEECCCCCcHHHHHHHHHH-HhCcCcccCEEE--ECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeC
Confidence            4678 99999999999999 689999999997  5655           4    57899999999999999999988

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.39  E-value=3.2e-13  Score=93.51  Aligned_cols=56  Identities=25%  Similarity=0.390  Sum_probs=50.8

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEecc-CCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~-~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ ..|+|+++|||.+ + +|+.|+|++||++|||++|++|++
T Consensus        17 l~v~~~~tV~~lK~~I~~-~~gip~~~QrL~~-~~~g~~L~d~~tL~~y~i~~~~~l~l   73 (159)
T 3rt3_B           17 VSLSSSMSVSELKAQITQ-KIGVHAFQQRLAV-HPSGVALQDRVPLASQGLGPGSTVLL   73 (159)
T ss_dssp             EECCTTCCHHHHHHHHHH-HHCCCGGGEEEEE-ETTCCBCCTTSCGGGGTCCTTCEEEE
T ss_pred             EEeCCCCcHHHHHHHHHH-HhCCCHHHEEEEE-cCCCCCCCCCCCHHHcCCCCCCEEEE
Confidence            478999999999999999 6899999999864 5 799999999999999999998863

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.39  E-value=3.2e-13  Score=94.96  Aligned_cols=56  Identities=23%  Similarity=0.434  Sum_probs=51.9

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      ++|++++||.+||++|++ ..++++++|||.  ++|+.|+|+++|++|||++|++|++-
T Consensus        35 l~v~~~~tV~~lK~~I~~-~~gip~~~QrL~--~~g~~L~d~~tL~~~~i~~~~~l~l~   90 (172)
T 3u30_A           35 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLV   90 (172)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcChHHEEEE--ECCccccccCCHhHcCCcccceeeee
Confidence            478999999999999999 689999999998  89999999999999999999988743

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.39  E-value=4.1e-13  Score=90.64  Aligned_cols=55  Identities=20%  Similarity=0.266  Sum_probs=47.2

Q ss_pred             CcccCCCcHHHHHHHHHhH-----hCCC--CccceeEEeccCCeecCCcchhhhcCCCCC--ceEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKA-----KSQL--YPDRQAVRLEIKGKILKDSDDVKSLGLKNG--DMVF   57 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~-----~~~i--~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g--~tL~   57 (107)
                      ++|++++||++||++|+++     ++++  ++++|||+  |+||.|+|++||++|+|+.+  ++||
T Consensus        31 lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI--y~GK~LeD~~TL~~y~I~~~~~~tlh   94 (116)
T 1wgh_A           31 FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI--YQGRFLHGNVTLGALKLPFGKTTVMH   94 (116)
T ss_dssp             EEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE--ETTEEECSSCBTTTTTCCSSCEEEEE
T ss_pred             EEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEE--ECCcCCCCCCcHHHcCCCCCCceEEE
Confidence            4789999999999999983     2454  69999998  99999999999999999766  4554

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.38  E-value=3.5e-13  Score=97.68  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=51.7

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||.+||++|++ ..++|+++|||+  ++|+.|+|++||++|||++|++|++
T Consensus       120 l~V~~s~TV~~LK~kI~~-~~gIp~~~QrLi--~~Gk~L~D~~tL~dygI~~gstI~L  174 (189)
T 3q3f_A          120 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL  174 (189)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHCCCGGGCCEE--ETTEECCTTCBGGGGTCCTTCEEEE
T ss_pred             EEeCCCCcHHHHHHHHHh-ccCCCHHHEEEE--ECCEECCCCCCHHHCCCCCCCEEEE
Confidence            478999999999999999 589999999998  9999999999999999999999874

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.38  E-value=2.8e-13  Score=87.05  Aligned_cols=55  Identities=16%  Similarity=0.230  Sum_probs=49.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCc-chhhhcCCCCCceEEEecc
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDVKSLGLKNGDMVFIKDL   61 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~-ktL~~~gi~~g~tL~vKDl   61 (107)
                      ++|++++||++||++|++ ..   +++|||+  ++|+.|+|+ ++|++|||++|++||+-.-
T Consensus        22 ~~v~~~~TV~~LK~~i~~-~~---~~~qrLi--~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~   77 (95)
T 1wia_A           22 AVARPEDTVGTLKSKYFP-GQ---ESQMKLI--YQGRLLQDPARTLSSLNITNNCVIHCHRS   77 (95)
T ss_dssp             EEECSSSBHHHHHHHHSS-ST---TTTCEEE--ETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred             EEECCCCcHHHHHHHHHh-hC---cCcEEEE--ECCEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence            468899999999999999 44   9999998  999999999 9999999999999987554

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.38  E-value=4.3e-13  Score=91.34  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=51.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||++||++|++ ..++|+++|||.  ++|+.|+|++||++||+++|++|++
T Consensus        91 ~~v~~~~tv~~lK~~i~~-~~gi~~~~qrL~--~~g~~L~d~~tL~~~~i~~~~~i~l  145 (152)
T 3b08_A           91 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL  145 (152)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             EEeCCCCcHHHHHHHHHH-HhCcChhhEEEE--ECCEECCCCCCHHHcCCCCCCEEEE
Confidence            467899999999999999 689999999998  8999999999999999999999875

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.37  E-value=5.3e-13  Score=90.88  Aligned_cols=57  Identities=23%  Similarity=0.403  Sum_probs=52.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD   60 (107)
                      +++++++||++||++|++ ..++|+++|||.  ++|+.|+|+++|++||+++|++|++..
T Consensus        15 ~~v~~~~tv~~lK~~i~~-~~gip~~~q~L~--~~g~~L~d~~tL~~~~i~~~~~l~l~~   71 (152)
T 3b08_A           15 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLVL   71 (152)
T ss_dssp             EECCTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred             EEECCCCCHHHHHHHHHH-HHCcChHHeEEE--ECCeECcCcccHHHhccCCCCeeEEEe
Confidence            468899999999999999 689999999998  899999999999999999999987543

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.37  E-value=4.4e-13  Score=94.24  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=51.7

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +++++++||.+||++|++ +.|+|+++|||+  ++|+.|+|++||++|||++|++|++
T Consensus       111 l~v~~~~tV~~lK~~I~~-~~gip~~~q~L~--~~g~~L~D~~tL~~y~i~~g~tl~l  165 (172)
T 3u30_A          111 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL  165 (172)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHCCCGGGCCEE--ETTEECCTTSBSGGGTCCTTCEEEE
T ss_pred             EEecCCCCHHHHHHHHHH-HhCCCceeEEEE--ECCccCCCCCcHHHhCCCCCCEEEE
Confidence            368899999999999999 689999999998  9999999999999999999999985

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.36  E-value=6.9e-13  Score=90.51  Aligned_cols=61  Identities=20%  Similarity=0.278  Sum_probs=50.3

Q ss_pred             CcccCCCcHHHHHHHHHhH-----hCCC--CccceeEEeccCCeecCCcchhhhcCCCCCc--eEE--EeccCC
Q psy12731          1 MEVSGSFTVKDIKKEVHKA-----KSQL--YPDRQAVRLEIKGKILKDSDDVKSLGLKNGD--MVF--IKDLGP   63 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~-----~~~i--~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~--tL~--vKDlGp   63 (107)
                      ++|++++||++||++|++.     ++++  ++++|||+  |+||.|+|++||++|+|++++  +|+  ++-.||
T Consensus        32 lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI--y~GK~LeD~~TL~~y~I~~~~~~tlhlv~r~~~~  103 (125)
T 2gow_A           32 FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI--YQGRFLHGNVTLGALKLPFGKTTVMHLVARETLP  103 (125)
T ss_dssp             EEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE--SSSSEEESSCBTGGGCCCTTSEEEEEEEECSCCS
T ss_pred             EEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEE--ECCcCCCCCCcHHHcCCCCCCceEEEEEecCCCC
Confidence            4789999999999999983     2566  58999998  999999999999999999775  443  555443

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.34  E-value=8.9e-14  Score=97.64  Aligned_cols=55  Identities=24%  Similarity=0.463  Sum_probs=0.0

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ ..++|+++|||+  ++|+.|+|+.||++|||++|++|++
T Consensus        15 l~V~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~dygI~~gstL~L   69 (152)
T 3u5c_f           15 LEVESSDTIDNVKSKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL   69 (152)
T ss_dssp             ----------------------------------------------------------
T ss_pred             EEECCCCCHHHHHHHHHH-HhCCCHHHEEEE--ECCEEccccCcHHHcCCCCCCEEEE
Confidence            578999999999999999 689999999998  9999999999999999999998863

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.26  E-value=4.5e-12  Score=97.73  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=51.7

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ ..++++++|||+  ++|+.|+|+++|++|||+++++|++
T Consensus       248 leV~~s~TV~dLK~kI~~-~~GIp~~~QRLi--~~Gk~L~D~~TLsdygI~~gstL~L  302 (307)
T 3ai5_A          248 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL  302 (307)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcChHHEEEE--eCCeecCCCCCHHHcCCCCCCEEEE
Confidence            478899999999999999 689999999998  8999999999999999999999985

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.20  E-value=6.8e-12  Score=96.95  Aligned_cols=58  Identities=28%  Similarity=0.451  Sum_probs=50.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEE-eccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVR-LEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~-l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      |++++++||++||++|++ ..|+||+||||+ ..++|+.|+|+.+|++|||++|++|++-
T Consensus        19 v~v~~~~Tv~~lK~~I~~-~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~   77 (320)
T 3shq_A           19 VDLTDQDTVEVLRHEIFR-KTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMV   77 (320)
T ss_dssp             EEEETTSBHHHHHHHHHH-HHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEE
Confidence            478999999999999999 689999999986 2268999999999999999999999853

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.19  E-value=1.5e-11  Score=96.69  Aligned_cols=54  Identities=20%  Similarity=0.322  Sum_probs=49.7

Q ss_pred             CcccCCCcHHHHHHHHHhH--hCCCCccceeEEeccCCeecCCcchhhhcCCCCCceE
Q psy12731          1 MEVSGSFTVKDIKKEVHKA--KSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV   56 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~--~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL   56 (107)
                      |+|++++||.+||++|++.  +.++++++|||+  |+||.|+|+++|++|||++|++|
T Consensus        22 leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi--y~GK~L~D~~tL~dygI~~gstI   77 (368)
T 1oqy_A           22 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI--YAGKILSDDVPIRDYRIDEKNFV   77 (368)
T ss_dssp             ECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE--SSSSEECSSSBTTTTCCCTTSCE
T ss_pred             EEeCCCChHHHHHHHHHHHhCcCCCChhheEEE--ECCeecCCcCCHHHcCCCCCCEE
Confidence            4789999999999999984  257999999998  99999999999999999999987

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.19  E-value=4.1e-11  Score=77.40  Aligned_cols=63  Identities=19%  Similarity=0.279  Sum_probs=52.7

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccC--C---eec-CCcchhhhcCCCCCceEEEeccCCcc
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIK--G---KIL-KDSDDVKSLGLKNGDMVFIKDLGPQI   65 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~--G---k~L-~D~ktL~~~gi~~g~tL~vKDlGpQi   65 (107)
                      .+++++||.+||++|++ ..|+++++|||.+..+  +   ..| +|+++|++||+.+|++|+|.|.-|.-
T Consensus        28 ~l~~~~TV~~LK~~i~~-~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~p~s   96 (97)
T 1wjn_A           28 QLPDSMTVQKVKGLLSR-LLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSGPSS   96 (97)
T ss_dssp             EEETTSBHHHHHHHHHT-TTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCSSCC
T ss_pred             ECCCCCCHHHHHHHHHH-HHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecCCCC
Confidence            46788999999999999 6899999999985421  1   225 67889999999999999999987754

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.02  E-value=2.9e-11  Score=87.68  Aligned_cols=49  Identities=14%  Similarity=0.192  Sum_probs=0.0

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF   57 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~   57 (107)
                      ++|++++||++||++|++ .+++|+++|||+  ++|+.|+|++||+     +++||+
T Consensus        15 LeV~~sdTV~~LK~kI~~-keGIP~~qQRLI--f~GK~LeD~~TLs-----~~STLh   63 (189)
T 2xzm_9           15 YTLEQGTSVLDLKSQISQ-DMGFEIDMMTLV--NNGFIAPNTELVT-----DDVTYY   63 (189)
T ss_dssp             ---------------------------------------------------------
T ss_pred             EEECCcChHHHHHHHHHH-HhCcChhHEEEE--ecCeECCCCCccc-----CCCEEE
Confidence            578999999999999999 699999999998  9999999999998     777765

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=98.93  E-value=8.4e-10  Score=71.52  Aligned_cols=54  Identities=13%  Similarity=0.273  Sum_probs=50.4

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +|.++++++.|++++++ +.++++++|||+  |+|+.|.+++|.+++++++|++|++
T Consensus        23 ~v~~~t~l~kl~~~y~~-~~gi~~~~~rf~--FdG~~l~~~~Tp~dl~medgD~Idv   76 (94)
T 2io1_B           23 KIKRHTPLSKLMKAYCE-RQGLSMRQIRFR--FDGQPINETDTPAQLEMEDEDTIDV   76 (94)
T ss_dssp             EEETTSCTHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTCCTTTTTCCTTCEEEE
T ss_pred             EECCCCHHHHHHHHHHH-HhCCCcccEEEE--ECCEEcCCCCCHHHcCCCCCCEEEE
Confidence            67899999999999999 689999999998  9999999999999999999998864

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=98.88  E-value=1.8e-09  Score=66.43  Aligned_cols=54  Identities=13%  Similarity=0.273  Sum_probs=50.9

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +|.++++++.|++++++ +.|++++++|+.  |+|+.|.+++|.+++++++|++|++
T Consensus        17 ~v~~~t~l~kl~~~y~~-~~gi~~~~~rf~--fdG~~l~~~~Tp~~l~medgD~Idv   70 (72)
T 1wm3_A           17 KIKRHTPLSKLMKAYCE-RQGLSMRQIRFR--FDGQPINETDTPAQLEMEDEDTIDV   70 (72)
T ss_dssp             EECTTSCTHHHHHHHHH-HHTCCTTTCEEE--ETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred             EECCCChHHHHHHHHHH-HhCCCcceEEEE--ECCEEcCCCCCHHHcCCCCCCEEEE
Confidence            57899999999999999 689999999998  9999999999999999999999976

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=98.87  E-value=2.9e-09  Score=66.76  Aligned_cols=55  Identities=18%  Similarity=0.239  Sum_probs=51.3

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      +|.++++++.|++++++ +.|++++++|+.  |+|+.|.+++|.+++++.+|++|+|-
T Consensus        24 ~i~~~t~l~kl~~~y~~-~~gi~~~~~rf~--fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A           24 SLSPDSPLKVLMSHYEE-AMGLSGHKLSFF--FDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             EECTTSCHHHHHHHHHH-HHTCTTCCCEEE--ETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             EECCCChHHHHHHHHHH-HhCCCcccEEEE--ECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            57899999999999999 689999999998  99999999999999999999999873

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=98.81  E-value=5.5e-09  Score=67.38  Aligned_cols=54  Identities=13%  Similarity=0.273  Sum_probs=50.4

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +|.++++++.|++++++ +.|++++++|+.  |+|+.|.+++|.+++++++|++|.+
T Consensus        21 ~vk~~t~l~kl~~~y~~-~~gi~~~~~rf~--FdG~~l~~~~Tp~dl~medgD~Idv   74 (91)
T 2io0_B           21 KIKRHTPLSKLMKAYCE-RQGLSMRQIRFR--FDGQPINETDTPAQLEMEDEDTIDV   74 (91)
T ss_dssp             EEETTSCTHHHHHHHHH-HTTCCSTTEEEE--ETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred             EECCCChHHHHHHHHHH-HhCCCcccEEEE--ECCEEcCCCCCHHHcCCCCCCEEEE
Confidence            57899999999999999 699999999998  9999999999999999999998864

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=98.72  E-value=1.2e-08  Score=65.74  Aligned_cols=54  Identities=13%  Similarity=0.273  Sum_probs=50.3

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +|.+++++..|++++++ +.+++++++||.  |+|+.|.+++|.+++++.+|++|++
T Consensus        33 ~v~~~t~l~kl~~~y~~-~~gi~~~~~rf~--fdG~~l~~~~Tp~dl~medgD~Idv   86 (93)
T 2d07_B           33 KIKRHTPLSKLMKAYCE-RQGLSMRQIRFR--FDGQPINETDTPAQLEMEDEDTIDV   86 (93)
T ss_dssp             EEETTSCHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred             EEccCCHHHHHHHHHHH-HhCCCccceEEE--ECCEEcCCCCCHHHcCCCCCCEEEE
Confidence            57899999999999999 689999999988  9999999999999999999998864

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.69  E-value=1.9e-08  Score=66.39  Aligned_cols=55  Identities=13%  Similarity=0.248  Sum_probs=51.1

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      +|.+++++..|++++++ +.+++++++||+  |+|+.|.+++|.+++++.+|++|++.
T Consensus        40 kVk~~t~l~kL~~~y~e-k~gi~~~~~rf~--FdG~~l~~~~Tp~dl~medgD~Idv~   94 (104)
T 1wz0_A           40 KIKRHTPLSKLMKAYCE-RQGLSMRQIRFR--FDGQPINETDTPAQLEMEDEDTIDVF   94 (104)
T ss_dssp             EECTTSCHHHHHHHHHH-HHTCCTTTSCEE--SSSSBCCTTSCTTTTTCCTTEEEEEC
T ss_pred             EEcCCChHHHHHHHHHH-HhCCCcceEEEE--ECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            57899999999999999 689999999998  99999999999999999999998753

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=98.66  E-value=2.2e-08  Score=66.72  Aligned_cols=54  Identities=13%  Similarity=0.273  Sum_probs=50.6

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +|.+++++..|++++++ +.++++++|||+  |+|+.|.+++|.+++++.+|++|.+
T Consensus        42 kVk~~t~l~kL~~ay~e-k~gi~~~~~rfi--FdG~~L~~~~Tp~dl~mEDgD~Idv   95 (110)
T 2k8h_A           42 RIKSRTALKKLIDTYCK-KQGISRNSVRFL--FDGTPIDETKTPEELGMEDDDVIDA   95 (110)
T ss_dssp             EECTTSSHHHHHHHHHH-HHTCCSSSCEEE--SSSCBCCSSSHHHHHHCSSEEEEEE
T ss_pred             EECCCChHHHHHHHHHH-HhCCCcccEEEE--ECCEEcCCCCCHHHcCCCCCCEEEE
Confidence            57899999999999999 689999999998  9999999999999999999999865

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=98.58  E-value=4.5e-08  Score=64.85  Aligned_cols=54  Identities=9%  Similarity=0.190  Sum_probs=50.3

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +|.+++++..|++++++ +.+++++++|+.  |+|+.|.+++|.+++++.+|++|.+
T Consensus        46 kIk~tt~l~kL~~ay~e-k~gi~~~~~rF~--FdG~rl~~~~Tp~dl~medgD~Idv   99 (106)
T 2eke_C           46 KIKKTTPLRRLMEAFAK-RQGKEMDSLRFL--YDGIRIQADQTPEDLDMEDNDIIEA   99 (106)
T ss_dssp             EEETTSCTHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred             EeCCCCHHHHHHHHHHH-HhCCCcccEEEE--ECCeEcCCCCCHHHcCCCCCCEEEE
Confidence            57899999999999999 689999999988  9999999999999999999999865

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.53  E-value=9.1e-08  Score=60.15  Aligned_cols=58  Identities=19%  Similarity=0.259  Sum_probs=47.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCC-eec--CCcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG-KIL--KDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~G-k~L--~D~ktL~~~gi~~g~tL~vK   59 (107)
                      |++++++|+.+|+++|++ ..+++++.|.+.+.+.. +.|  .++.+|+++|++.|+.|++.
T Consensus        18 i~v~~~~t~~~L~~~I~~-~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A           18 ITATKRETAATFLKKVAK-EFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCSSCCHHHHHHHHHH-HTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             EEcCCcChHHHHHHHHHH-HcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            578999999999999999 57899999888754443 334  36779999999999999875

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.06  E-value=4.2e-06  Score=56.14  Aligned_cols=54  Identities=17%  Similarity=0.306  Sum_probs=49.8

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      .|.+++++..|++.+.+ +.|++++++|+.  |+|+.|.+++|.+++++.+|++|.+
T Consensus        56 kIk~tt~L~KLm~aY~e-r~Gl~~~~irFl--FDG~rI~~~~TP~dL~MEDgD~IdV  109 (115)
T 3kyd_D           56 KVKMTTHLKKLKESYCQ-RQGVPMNSLRFL--FEGQRIADNHTPKELGMEEEDVIEV  109 (115)
T ss_dssp             EEETTSCTHHHHHHHHH-HHTCCTTSEEEE--ETTEECCTTCCTTTTTCCTTCEEEE
T ss_pred             EEccCChHHHHHHHHHH-HhCCChhhEEEE--ECCeECCCCCCHHHcCCCCCCEEEE
Confidence            56789999999999999 579999999988  9999999999999999999999864

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.02  E-value=4.6e-06  Score=60.74  Aligned_cols=53  Identities=9%  Similarity=0.198  Sum_probs=49.8

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF   57 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~   57 (107)
                      +|.+++++..|++.+.+ +.|++++++|+.  |+|+.|.+++|.+++++.+|++|.
T Consensus        44 kIk~~t~l~kL~~ay~e-r~Gi~~~~~RF~--FdG~rI~~~~TP~dL~MEdgD~Id   96 (200)
T 3pge_A           44 KIKKTTPLRRLMEAFAK-RQGKEMDSLRFL--YDGIRIQADQTPEDLDMEDNDIIE   96 (200)
T ss_dssp             EECTTSCTHHHHHHHHH-HHSSCGGGEEEE--ETTEECCTTCCTTTTTCCTTEEEE
T ss_pred             EEecCCHHHHHHHHHHH-HhCCChhhEEEE--ECCEEcCCCCCHHHcCCCCCCEEE
Confidence            57899999999999999 689999999998  999999999999999999999885

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=97.89  E-value=1.2e-05  Score=58.56  Aligned_cols=54  Identities=9%  Similarity=0.195  Sum_probs=50.2

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      .|.+++++..|++.+.+ +.+++++++|+.  |+|+.|.+++|.+++++.+|++|.+
T Consensus        72 KIKrtTpL~KLmeAYcE-RqGL~~~sIRFL--FDGqRI~~ddTPeDLdMEDGDtIDV  125 (207)
T 3tix_A           72 KIKKTTPLRRLMEAFAK-RQGKEMDSLTFL--YDGIEIQADQTPEDLDMEDNDIIEA  125 (207)
T ss_dssp             EEETTSCTHHHHHHHHH-HTTCCGGGSCEE--ETTEECCSSCCTTTTTCCTTEEEEE
T ss_pred             EEccCChHHHHHHHHHH-HhCCCcccEEEE--ECCeecCCCCCHHHcCCCCCCEEEE
Confidence            57789999999999999 689999999998  9999999999999999999999854

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=97.74  E-value=2.4e-05  Score=50.74  Aligned_cols=46  Identities=13%  Similarity=0.134  Sum_probs=36.9

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC--CcchhhhcC
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--DSDDVKSLG   49 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~--D~ktL~~~g   49 (107)
                      +.+.++.||..+|++|++ +.|+++++|+|.  ++|+.|.  .++.-..|.
T Consensus        28 v~I~~~etv~~~ke~V~e-qTgIp~~~Q~LL--~eg~~l~l~p~~~a~~~p   75 (94)
T 4efo_A           28 IYIHSYNTATIFHELVYK-QTKIISSNQELI--YEGRRLVLEPGRLAQHFP   75 (94)
T ss_dssp             EEEETTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEEECCCTTCBGGGSC
T ss_pred             EEeccchHHHHHHHHHHH-HhCCCHHHHHHH--hCCCccccCCCCccccCC
Confidence            357899999999999999 689999999998  8887764  344444444

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=97.70  E-value=7.1e-05  Score=47.24  Aligned_cols=54  Identities=28%  Similarity=0.399  Sum_probs=48.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCcc-ceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPD-RQAVRLEIKGKILKDSDDVKSLGLKNGDMVF   57 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~-rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~   57 (107)
                      ++|.+++||.+|-+..-+ +.+++++ +.||.  |.|..|..+.++++|++.+|+.|-
T Consensus        24 f~I~~~t~v~kLi~ayc~-~~~I~~~~~Irll--FDGdRLdp~~tp~DlemeD~D~ID   78 (82)
T 3goe_A           24 LSIPVDFTVKDLIKRYCT-EVKISFHERIRLE--FEGEWLDPNDQVQSTELEDEDQVS   78 (82)
T ss_dssp             EEEETTSBHHHHHHHHHH-HHTCCCCTTCEEE--ETTEECCTTSBGGGSSCCTTCEEE
T ss_pred             EEecCCCCHHHHHHHHHH-HcCCCcCceEEEE--EcCcccCccCChhhhCCcCCceee
Confidence            367899999999999998 5789999 77777  999999999999999999999874

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=97.53  E-value=1.3e-05  Score=59.25  Aligned_cols=53  Identities=9%  Similarity=0.198  Sum_probs=0.0

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF   57 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~   57 (107)
                      +|.+++++..|++.+.+ +.|++++++|+.  |+|+.+.+++|.+++++++|++|.
T Consensus        36 KIKrtTpL~KLM~AYcE-RqGLs~~siRFL--FDGqRI~dddTPadL~MEDGDtID   88 (227)
T 3v7o_A           36 KIKKTTPLRRLMEAFAK-RQGKEMDSLRFL--YDGIRIQADQTPEDLDMEDNDIIE   88 (227)
T ss_dssp             --------------------------------------------------------
T ss_pred             EEccCChHHHHHHHHHH-HhCCCccceEEE--ECCEecCCCCCHHHcCCCCCCEEE
Confidence            57789999999999999 689999999988  999999999999999999999884

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.42  E-value=8.5e-05  Score=50.63  Aligned_cols=57  Identities=14%  Similarity=0.245  Sum_probs=46.6

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCcc-------------------------------------ceeEEeccCCeecCCcch
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPD-------------------------------------RQAVRLEIKGKILKDSDD   44 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~-------------------------------------rQrL~l~~~Gk~L~D~kt   44 (107)
                      .|+.+.||.+++..|.+ +-|++..                                     +|+|..+..+..|++++|
T Consensus        27 ~VD~S~~V~~lv~~Ic~-kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~WLD~srt  105 (128)
T 2kc2_A           27 MVDDSKTVTDMLMTICA-RIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDHGRT  105 (128)
T ss_dssp             EEEECSSHHHHHHHHHH-HHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEEEECSSSC
T ss_pred             EeCCCcCHHHHHHHHHH-HhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCCcccCCCc
Confidence            47889999999999999 5677644                                     666653345678899999


Q ss_pred             hhhcCCCCCceEEEe
Q psy12731         45 VKSLGLKNGDMVFIK   59 (107)
Q Consensus        45 L~~~gi~~g~tL~vK   59 (107)
                      |.+.||.++++|.+|
T Consensus       106 L~EQGI~e~~tllLR  120 (128)
T 2kc2_A          106 LREQGVEEHETLLLR  120 (128)
T ss_dssp             HHHHTCCTTSEEEEE
T ss_pred             HHHcCCCCCCEEEEE
Confidence            999999999999876

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=97.20  E-value=0.00073  Score=43.81  Aligned_cols=54  Identities=17%  Similarity=0.273  Sum_probs=48.4

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      .|.++++...|.+...+ +.+++++..|+.  |+|..|..++|.+++++.+|++|-|
T Consensus        42 kIk~~t~l~kLm~aY~~-~~g~~~~~vrF~--FDG~rI~~~~TP~dLdMEDgD~IDv   95 (97)
T 2jxx_A           42 SLSRDSPLKTLMSHYEE-AMGLSGRKLSFF--FDGTKLSGRELPADLGMESGDLIEV   95 (97)
T ss_dssp             EEETTSCHHHHHHHHHH-HTTCSSSCCEEE--ETTEECCSCSCHHHHTCCTTEEEEE
T ss_pred             EECCCChHHHHHHHHHH-HHCCCcccEEEE--ECCEEcCCCCCHHHcCCCCCCEEEE
Confidence            45788999999999999 689999887877  9999999999999999999999865

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.00  E-value=0.00099  Score=41.93  Aligned_cols=56  Identities=21%  Similarity=0.272  Sum_probs=44.9

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCcc---ceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPD---RQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~---rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      .++...||+.|++.+.+. .+++..   .=.++...++..|.++++|++|+|++|+.|.+
T Consensus        22 RIP~~~tvK~Li~~l~ea-~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A           22 RLSDYHPVKKVIDIAWQA-QSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             EEETTSBTTHHHHHHHHH-SCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             ECCCchhHHHHHHHHHHH-hCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            567889999999999984 555442   13456668899999999999999999998864

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=96.99  E-value=0.00064  Score=49.15  Aligned_cols=53  Identities=9%  Similarity=0.198  Sum_probs=48.5

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF   57 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~   57 (107)
                      ++..+++...|+++.++ +.|++++++|+.  |+|+.+.+++|-.+.+..++++|.
T Consensus        36 ~i~~~~~l~kl~~~y~~-~~g~~~~~~~f~--fdG~~i~~~~Tpk~L~~ed~d~I~   88 (209)
T 3uf8_A           36 KIKKTTPLRRLMEAFAK-RQGKEMDSLRFL--YDGIRIQADQTPEDLDMEDNDIIE   88 (209)
T ss_dssp             EEETTSCTHHHHHHHHH-HHTCCGGGCEEE--ETTEECCTTCCTTTTTCCTTEEEE
T ss_pred             EEeeCCHHHHHHHHHHH-hhCCChheEEEE--ECCEeccCCCChHHhhhcccccch
Confidence            56789999999999999 689999999998  999999999999999999998774

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=96.85  E-value=0.00017  Score=56.60  Aligned_cols=54  Identities=9%  Similarity=0.190  Sum_probs=0.0

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +|.++++...|++++++ +.|++++++|+.  ++|+.|.+++|.+++++++|++|.+
T Consensus        36 kIk~~t~l~kLm~aY~~-r~G~~~~~~rFl--FdG~rI~~~~TP~~L~MEDgD~Idv   89 (360)
T 3ix6_A           36 KIKKTTPLRRLMEAFAK-RQGKEMDSLRFL--YDGIRIQADQTPEDLDMEDNDIIEA   89 (360)
T ss_dssp             ---------------------------------------------------------
T ss_pred             EEecCChHHHHHHHHHH-HhCCCcceEEEE--ECCeECCCCCChHHcCCCccchhhh
Confidence            57789999999999999 689999999988  9999999999999999999999853

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=96.44  E-value=0.00048  Score=53.53  Aligned_cols=53  Identities=9%  Similarity=0.196  Sum_probs=0.0

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF   57 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~   57 (107)
                      +|..+++...|++..++ +.|++++++|+.  |+|+.|.+++|-+++++++|++|.
T Consensus        45 ~i~~~~~~~~l~~~y~~-~~g~~~~~~~f~--f~G~~i~~~~Tp~~l~med~d~i~   97 (389)
T 4da1_A           45 KIKKTTPLRRLMEAFAK-RQGKEMDSLRFL--YDGIRIQADQAPEDLDMEDNDIIE   97 (389)
T ss_dssp             --------------------------------------------------------
T ss_pred             EECCCChHHHHHHHHHH-HhCCCcceEEEE--ECCEEcCCCCCHHHcCCCCCCEee
Confidence            56788999999999999 689999999987  999999999999999999999874

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=96.15  E-value=0.015  Score=35.86  Aligned_cols=55  Identities=9%  Similarity=0.035  Sum_probs=44.0

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC---CcchhhhcCCCCCceEEEe
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK---DSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~---D~ktL~~~gi~~g~tL~vK   59 (107)
                      ...++||.+|.+-|..  .+.++...+|...+-.|.+.   .++||++.|+...++|+|.
T Consensus        24 F~~~~tl~~v~~fv~~--~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve   81 (84)
T 3qx1_A           24 FLASNKLQIVFDFVAS--KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   81 (84)
T ss_dssp             EETTSBHHHHHHHHHH--TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred             eCCCCCHHHHHHHHHH--cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence            4578999999999988  35667777777556678883   4679999999999999875

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=95.76  E-value=0.026  Score=36.74  Aligned_cols=59  Identities=8%  Similarity=0.067  Sum_probs=47.1

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC--C-cchhhhcCCCCCceEEEeccC
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--D-SDDVKSLGLKNGDMVFIKDLG   62 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~--D-~ktL~~~gi~~g~tL~vKDlG   62 (107)
                      .+.++||.+|.+-|.. ..+.+...-.|...+-.|.+.  | ++||++.|+...++|+++...
T Consensus        30 F~~~~tl~~v~~fV~~-~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~~   91 (109)
T 2dzk_A           30 FPSDAPLEEARQFAAQ-TVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPAG   91 (109)
T ss_dssp             ECTTSBHHHHHHHHHH-HHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECCS
T ss_pred             eCCCCCHHHHHHHHHh-ccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEECc
Confidence            4678999999999998 445555566677666778886  3 679999999999999999874

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.72  E-value=0.012  Score=37.49  Aligned_cols=57  Identities=16%  Similarity=0.267  Sum_probs=47.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEe-ccCCeecCCcchhhhcCCCCCceEEEecc
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRL-EIKGKILKDSDDVKSLGLKNGDMVFIKDL   61 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l-~~~Gk~L~D~ktL~~~gi~~g~tL~vKDl   61 (107)
                      +.|+|..+..++--.|=+ +..++|+.--|.- .-.+..|+=+++|.+||+++   ||.+|-
T Consensus        25 vRVSP~vpL~ellp~IC~-Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~   82 (91)
T 2daj_A           25 VRVSPHASLQELAPIICS-KCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDV   82 (91)
T ss_dssp             EEECSSSCTTTHHHHHHH-HTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEEC
T ss_pred             EEeCCCCcHHHHHHHHhh-cccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheecc
Confidence            358999999999999999 6889999987762 33578899899999999965   888885

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=95.53  E-value=0.02  Score=36.96  Aligned_cols=53  Identities=13%  Similarity=0.144  Sum_probs=46.5

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +..++..+.|.+...+ +.|+++++.|+.  ++|..+.++.|-++.++.+|++|-+
T Consensus        37 IK~tt~l~KL~~aYc~-r~gv~~~sirFl--fDG~rI~~~~TP~~L~meD~DiID~   89 (95)
T 2l76_A           37 LRMSEPLQSVVDHMAT-HLGVSPSRILLL--FGETELSPTATPRTLKLGVADIIDC   89 (95)
T ss_dssp             ECSSSCTHHHHHHHHH-HHTSCGGGEEEE--ETTEECCTTSCHHHHTCCSSCEEEE
T ss_pred             EecCChHHHHHHHHHh-hcCCChhhEEEE--ECCcCCCCCCCHhHcCCCCCCEEEE
Confidence            4566777888899888 689999999988  9999999999999999999998854

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=95.48  E-value=0.019  Score=43.97  Aligned_cols=58  Identities=21%  Similarity=0.210  Sum_probs=45.2

Q ss_pred             cccCCCcHHHHHHHHHhHhCC---CCccceeEEe----ccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQ---LYPDRQAVRL----EIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~---i~~~rQrL~l----~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      .++|++||.|+-..|-++.+.   .+++.=.|..    +-+|+.|++.+||+.|++.+|+.+.++
T Consensus        18 ~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~   82 (371)
T 3ivf_A           18 QFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR   82 (371)
T ss_dssp             EECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred             EECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence            568999999999999884332   2455556765    346788999999999999999988765

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=95.01  E-value=0.073  Score=34.00  Aligned_cols=57  Identities=12%  Similarity=0.195  Sum_probs=45.8

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD   60 (107)
                      |.|.|++|+.|+-++--+ +.|+++++-.|.  +.+|.|+=+-.+.-.|+.+|++|.+..
T Consensus        24 VKvtp~t~L~~VL~eaC~-K~gl~~~~~~Lk--h~~k~lDLSlpfRlsgLpnnAkLELv~   80 (90)
T 2al3_A           24 VKVTPSTVLLQVLEDTCR-RQDFNPSEYDLK--FQRTVLDLSLQWRFANLPNNAKLEMVP   80 (90)
T ss_dssp             ECCCTTSBHHHHHHHHHH-HTTCCGGGCEEE--ETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             EEECCCCCHHHHHHHHHH-HhCCChhhCeEE--eCCEeccccceeEecCCCCCCEEEEEE
Confidence            468999999997555444 368998877766  999999888888889999999887643

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=94.98  E-value=0.041  Score=36.70  Aligned_cols=60  Identities=20%  Similarity=0.301  Sum_probs=48.1

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeec--CC-cchhhhcCCCCCceEEEeccCCc
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL--KD-SDDVKSLGLKNGDMVFIKDLGPQ   64 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L--~D-~ktL~~~gi~~g~tL~vKDlGpQ   64 (107)
                      ...++||.+|.+-|.. . +.++..-.|...+-.|.|  .| ++||++.|+...++|+|..+.+.
T Consensus        60 F~~~~tl~~V~~fV~~-~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~d~~  122 (124)
T 1wj4_A           60 LPEQAKLLALVKHVQS-K-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQESGPS  122 (124)
T ss_dssp             EETTSCHHHHHHHHHH-H-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEECCST
T ss_pred             eCCCCCHHHHHHHHHh-c-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEccCC
Confidence            4578999999999988 4 666667777766778888  33 68999999999999999887654

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=94.18  E-value=0.082  Score=34.97  Aligned_cols=56  Identities=18%  Similarity=0.243  Sum_probs=34.3

Q ss_pred             ccCCCcHHHHHHHHHhHh-CCCCccce----eEEec----cCCeecCCc-------------chhhhcCCCCCceEEE
Q psy12731          3 VSGSFTVKDIKKEVHKAK-SQLYPDRQ----AVRLE----IKGKILKDS-------------DDVKSLGLKNGDMVFI   58 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~-~~i~~~rQ----rL~l~----~~Gk~L~D~-------------ktL~~~gi~~g~tL~v   58 (107)
                      |-..+||.++|++|-.+. .+.|-++.    -+-|.    ..|+.|.|.             .||+.|+|.+|++|-+
T Consensus        30 VLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l  107 (111)
T 4e71_A           30 VLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDGATLIL  107 (111)
T ss_dssp             EETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTTCEEEE
T ss_pred             eeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCCCEEEE
Confidence            446899999999999753 34444331    11122    235666552             2799999999999864

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=93.79  E-value=0.12  Score=33.37  Aligned_cols=57  Identities=7%  Similarity=0.110  Sum_probs=45.0

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC--CcchhhhcCCCCCceEEEecc
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--DSDDVKSLGLKNGDMVFIKDL   61 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~--D~ktL~~~gi~~g~tL~vKDl   61 (107)
                      ...++||.+|.+-|.. . +..+..-+|...+-.|.|.  .++||++.|+...++|+|.++
T Consensus        40 F~~~~tl~~v~~fv~~-~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~   98 (109)
T 2cr5_A           40 FFKSWNSQVLLDWMMK-V-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK   98 (109)
T ss_dssp             EESSSBTHHHHHHHHH-H-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred             eCCCCCHHHHHHHHHh-c-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence            3578999999999997 3 4455666776556677885  367999999999999999876

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=93.73  E-value=0.18  Score=33.50  Aligned_cols=54  Identities=20%  Similarity=0.242  Sum_probs=40.7

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCC-cchhhhcCCCCCceE
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD-SDDVKSLGLKNGDMV   56 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D-~ktL~~~gi~~g~tL   56 (107)
                      .+.++||.+|.+-|....++.....-.|...+-.|.+.| ++||++.|+.+...|
T Consensus        69 F~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl  123 (127)
T 1s3s_G           69 FNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV  123 (127)
T ss_dssp             CCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred             eCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence            467899999999999843444455667766677888865 689999999885443

>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A

Probab=93.59  E-value=0.13  Score=33.20  Aligned_cols=62  Identities=19%  Similarity=0.326  Sum_probs=42.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEec--cCCe--------ecCC------cchhhhcCCCCCceEEEeccCC
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE--IKGK--------ILKD------SDDVKSLGLKNGDMVFIKDLGP   63 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~--~~Gk--------~L~D------~ktL~~~gi~~g~tL~vKDlGp   63 (107)
                      ++++++.|.+++-+.+.+ .+.+...+=.|+..  .+++        .|+.      +++|.+.|+.+|.+|+|-|---
T Consensus         9 l~v~~~~TL~~lid~L~~-~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD~~~   86 (98)
T 1y8x_B            9 IQFSPSAKLQEVLDYLTN-SASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTT   86 (98)
T ss_dssp             EECCTTCBHHHHHHHHHH-CTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTTC
T ss_pred             EEECCchhHHHHHHHHHh-ChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEECCCC
Confidence            478999999999999999 45544433344311  0133        3332      3568999999999999988643

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=93.39  E-value=0.18  Score=36.25  Aligned_cols=56  Identities=20%  Similarity=0.278  Sum_probs=43.4

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCcc-ceeEEecc---CCeecCC-cchhhhcCCCCCceEEEe
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPD-RQAVRLEI---KGKILKD-SDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~-rQrL~l~~---~Gk~L~D-~ktL~~~gi~~g~tL~vK   59 (107)
                      ++..+||.+|++.+.+ ..+++++ .-||-..+   +...|.| ++||+++++.++.+|.+.
T Consensus       146 ~Sk~~ti~~l~~~~~~-~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE  206 (217)
T 4a3p_A          146 FSKADTIDTIEKEIRK-IFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE  206 (217)
T ss_dssp             ECTTSBHHHHHHHHHH-HTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred             EcccchHHHHHHHHHH-HhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence            5788999999999999 5889987 46776322   2345665 569999999999988753

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=93.27  E-value=0.29  Score=35.53  Aligned_cols=64  Identities=19%  Similarity=0.291  Sum_probs=47.0

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCcc-ceeEEecc---CCeecCC-cchhhhcCCCCCceEEEeccCCcchh
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPD-RQAVRLEI---KGKILKD-SDDVKSLGLKNGDMVFIKDLGPQIGW   67 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~-rQrL~l~~---~Gk~L~D-~ktL~~~gi~~g~tL~vKDlGpQi~w   67 (107)
                      ++..+||.+|++.+.+ ..+++++ .-||-..+   +...|.| ++||+++++.++.+|.+.=-...-+|
T Consensus       158 ~Sk~~ti~~l~~~~~~-~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~W  226 (231)
T 3jyu_A          158 FSKADTIATIEKEMRK-LFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTW  226 (231)
T ss_dssp             ECTTCBHHHHHHHHHH-HTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSCC
T ss_pred             ecccCcHHHHHHHHHH-HhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence            4788999999999999 5889987 47887533   2355665 57999999999998765332233344

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=92.49  E-value=0.28  Score=33.55  Aligned_cols=54  Identities=19%  Similarity=0.291  Sum_probs=34.9

Q ss_pred             ccCCCcHHHHHHHHHhHh-CCCCcccee-----EEec----cCCe-ecCCc-------------chhhhcCCCCCceEE
Q psy12731          3 VSGSFTVKDIKKEVHKAK-SQLYPDRQA-----VRLE----IKGK-ILKDS-------------DDVKSLGLKNGDMVF   57 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~-~~i~~~rQr-----L~l~----~~Gk-~L~D~-------------ktL~~~gi~~g~tL~   57 (107)
                      |-..+||.++|++|-++. .+.|-++ |     +-|.    ..|+ .|.|.             .||+.|+|.+|++|-
T Consensus        47 VLdCDTItQvKeKiLDavYk~~PySq-RP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dga~l~  124 (138)
T 2r2o_A           47 VLDCDTISQAKEKMLDQLYKGVPLTQ-RPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVA  124 (138)
T ss_dssp             EETTCBHHHHHHHHHHHHTTTSCGGG-CCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTTCEEE
T ss_pred             EeccccHHHHHHHHHHHHHcCCcccc-CCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCCCEEE
Confidence            446789999999999853 3444332 2     1111    2243 35543             279999999999985

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=89.45  E-value=0.49  Score=31.92  Aligned_cols=57  Identities=12%  Similarity=0.183  Sum_probs=35.7

Q ss_pred             ccCCCcHHHHHHHHHhHh-CCCCcc------ceeEEe--ccCCe-ecCCc-------------chhhhcCCCCCceEEEe
Q psy12731          3 VSGSFTVKDIKKEVHKAK-SQLYPD------RQAVRL--EIKGK-ILKDS-------------DDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~-~~i~~~------rQrL~l--~~~Gk-~L~D~-------------ktL~~~gi~~g~tL~vK   59 (107)
                      |-..+||.++|++|-++. .+.|-+      ...|-.  ...|+ .|.|.             .||+.|+|.+|++|-+.
T Consensus        23 VLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dgatv~l~  102 (127)
T 3h6n_A           23 AMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEGASLAMS  102 (127)
T ss_dssp             EETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTTCEEEEE
T ss_pred             eeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCCCEEEEE
Confidence            446799999999999753 344433      222211  11233 25442             27999999999998653

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=89.21  E-value=0.22  Score=33.44  Aligned_cols=29  Identities=7%  Similarity=0.071  Sum_probs=25.7

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEe
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRL   32 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l   32 (107)
                      |..++|+.++|+.|++ ..|+++++|||..
T Consensus        62 v~k~~~~~~~~~~va~-~lg~~~~~~RlW~   90 (130)
T 2kvr_A           62 VLKNSSLAEFVQSLSQ-TMGFPQDQIRLWP   90 (130)
T ss_dssp             CCTTSBHHHHHHHHHH-HHCCCGGGCEEEE
T ss_pred             EeccCcHHHHHHHHHH-HhCCCcccEEEEE
Confidence            5568999999999999 5799999999973

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=89.11  E-value=0.46  Score=31.59  Aligned_cols=56  Identities=18%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             ccCCCcHHHHHHHHHhHh-CCCCccce----eEEecc----CCe-ecCCc-------------chhhhcCCCCCceEEE
Q psy12731          3 VSGSFTVKDIKKEVHKAK-SQLYPDRQ----AVRLEI----KGK-ILKDS-------------DDVKSLGLKNGDMVFI   58 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~-~~i~~~rQ----rL~l~~----~Gk-~L~D~-------------ktL~~~gi~~g~tL~v   58 (107)
                      |-..+||.++|++|-.+. .+.|-++.    -+-|..    .|. .|.|.             .||++|+|.+|++|-+
T Consensus        33 VLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l  111 (117)
T 4e74_A           33 ILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDGSVVAL  111 (117)
T ss_dssp             EETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTTCEEEE
T ss_pred             eecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCCCEEEE
Confidence            446789999999998753 34444431    111211    233 34441             2799999999999853

>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A

Probab=85.77  E-value=1.5  Score=29.53  Aligned_cols=54  Identities=15%  Similarity=0.274  Sum_probs=35.1

Q ss_pred             CCcHHHHHHHHHhHhCCCCccceeEEeccCCeec-----CC--cchhhhcCCCCCceEEEecc
Q psy12731          6 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL-----KD--SDDVKSLGLKNGDMVFIKDL   61 (107)
Q Consensus         6 ~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L-----~D--~ktL~~~gi~~g~tL~vKDl   61 (107)
                      .+|..+|-+.+.+ +.|+.. ...+.-..+.+.|     +|  +++|++.|+++|+.|.|.|=
T Consensus        19 ~~TL~dLV~~l~~-~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE   79 (127)
T 3onh_A           19 KMKLSDFVVLIRE-KYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE   79 (127)
T ss_dssp             HCBHHHHHHHHHH-HHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred             ccCHHHHHHHHHH-hcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence            5789998888876 456542 3333211123333     12  57999999999999998874

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=85.39  E-value=0.96  Score=27.47  Aligned_cols=50  Identities=22%  Similarity=0.197  Sum_probs=29.8

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCc---c-------ceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYP---D-------RQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~---~-------rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++++.+||.+|.+.+..+.+++..   +       .-++.  -+|+....     +.-+++|++|.+
T Consensus        23 ~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~--VN~~~v~~-----~~~l~~gDeV~i   82 (89)
T 3po0_A           23 DVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVL--RNGEAAAL-----GEATAAGDELAL   82 (89)
T ss_dssp             ECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEE--ETTEECCT-----TSBCCTTCEEEE
T ss_pred             ECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEE--ECCEECCC-----CcccCCCCEEEE
Confidence            456788999999999985333211   0       01121  34544432     455888888864

>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5

Probab=84.99  E-value=1.1  Score=29.21  Aligned_cols=62  Identities=29%  Similarity=0.287  Sum_probs=39.1

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEE-eccCC--eecCCcchh--hhcCCCCCceEEEeccCCcc
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVR-LEIKG--KILKDSDDV--KSLGLKNGDMVFIKDLGPQI   65 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~-l~~~G--k~L~D~ktL--~~~gi~~g~tL~vKDlGpQi   65 (107)
                      +..++|+.+++..+++ +-+...+-+.|. .+++|  ..|++++..  ...++..--.+..||.-...
T Consensus        26 ~~v~~sa~eIl~~va~-kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd~~d~L   92 (104)
T 1wgy_A           26 AKVSSIAQEILKVVAE-KIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKDLADTL   92 (104)
T ss_dssp             CCTTCBSHHHHHHHHH-HHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECCSSSCC
T ss_pred             EeccchHHHHHHHHHH-HhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehHhcccc
Confidence            5678899999999999 456655566665 45666  345655433  33444333345568886554

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=84.54  E-value=3.3  Score=25.73  Aligned_cols=58  Identities=16%  Similarity=0.194  Sum_probs=38.8

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEecc---CCeecCCcchhhhc--CCCCC-ceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI---KGKILKDSDDVKSL--GLKNG-DMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~---~Gk~L~D~ktL~~~--gi~~g-~tL~vK   59 (107)
                      |.|+++.+..+|.++|++ +.+++++...|....   ++..+..++.+++.  .++++ -||+.+
T Consensus        18 irvp~~~~y~~L~~~l~~-kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL~C~   81 (83)
T 1oey_A           18 MKTQPGLPYSQVRDMVSK-KLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTLWCE   81 (83)
T ss_dssp             EEECTTCCHHHHHHHHHH-HTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEEEEC
T ss_pred             EECCCCCCHHHHHHHHHH-HhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEEEEe
Confidence            468899999999999999 688888888887321   23335445555442  34455 355554

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=83.82  E-value=1.5  Score=25.92  Aligned_cols=51  Identities=14%  Similarity=0.276  Sum_probs=30.8

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++ +.+||.+|.+.+.. ++++.....++..--+|+...+    .+.-+++|++|.+
T Consensus        17 e~-~~~tv~~ll~~L~~-~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i   67 (74)
T 3rpf_C           17 FI-KANDLKELRAILQE-KEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISL   67 (74)
T ss_dssp             EE-ECSSHHHHHHHHHT-CTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEE
T ss_pred             ee-CCCcHHHHHHHHHH-CcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEE
Confidence            44 56899999999988 5654432222222245655432    2445888888854

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=83.79  E-value=1.3  Score=27.62  Aligned_cols=52  Identities=23%  Similarity=0.431  Sum_probs=30.4

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCcc--------ceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPD--------RQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~--------rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++++.+||.+|.+.+..+.+++...        +.++..-.+|+...     .+.-+++|++|-|
T Consensus        32 e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~-----~~~~L~dGDeV~i   91 (98)
T 1vjk_A           32 ELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-----WDEELKDGDVVGV   91 (98)
T ss_dssp             EECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC-----TTCBCCTTCEEEE
T ss_pred             ECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC-----CCCCCCCCCEEEE
Confidence            4567899999999998843322110        11121123454443     2456889998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	107
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	2e-05
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	3e-05
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	4e-05
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	4e-05
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	2e-04
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	2e-04
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-04
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	3e-04
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	3e-04
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	4e-04
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	0.003
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	0.003

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (87), Expect = 2e-05
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 2  EVSGSFTVKDIKKEVHKAKSQLYPDRQA-VRLEIKGKILKDSDDVKSLGLKNGD---MVF 57
           +S   TV D+K+ +    + + P+RQ  + L++KGK  ++   + +L LK      M+ 
Sbjct: 23 TLSEDDTVLDLKQFLKT-LTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG 81

Query: 58 IKDLGPQIG 66
           ++ GP  G
Sbjct: 82 TRESGPSSG 90

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (86), Expect = 3e-05
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1  MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
          + V+   TV   K+ ++K  + +    Q  RL   GKILKD   V+S  +++G  V
Sbjct: 15 VNVAPESTVLQFKEAINK-ANGIPVANQ--RLIYSGKILKDDQTVESYHIQDGHSV 67

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 4e-05
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 1  MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
          + +S S +V ++K ++ + K  ++  +Q + +   G  L+D   + S GL  G  V
Sbjct: 15 VSLSSSMSVSELKAQITQ-KIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTV 69

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.2 bits (86), Expect = 4e-05
 Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 1  MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-----DSDDVKSL---GLKN 52
           ++  S TV+ +K  + +   ++        L  +   +        +D++ L    ++N
Sbjct: 27 KQLPDSMTVQKVKGLLSR-LLKVPVSEL--LLSYESSKMPGREIELENDLQPLQFYSVEN 83

Query: 53 GDMVFIKDLGPQIG 66
          GD + ++  GP  G
Sbjct: 84 GDCLLVRWSGPSSG 97

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 2e-04
 Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1  MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
            +  +  V  IK ++H+  + +   +Q  +L+ +G  +KDS+ +    + NG ++
Sbjct: 26 FTLPLTDQVSVIKVKIHE-ATGMPAGKQ--KLQYEGIFIKDSNSLAYYNMANGAVI 78

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 2e-04
 Identities = 12/58 (20%), Positives = 25/58 (43%)

Query: 1  MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58
          + +    TVK +K+++   K +        +L   GKIL D   ++   +   + V +
Sbjct: 17 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVV 74

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 2e-04
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 2  EVSGSFTVKDIKKEVH-KAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
               ++V  +K  +      +  P+ Q  RL   GK+L D   ++ L  K   
Sbjct: 25 SGDRGWSVGHLKAHLSRVYPERPRPEDQ--RLIYSGKLLLDHQCLRDLLPKQEK 76

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 3e-04
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 1  MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
          +++    TVK +K+++   K +        +L   GKIL D   +K   +   + V
Sbjct: 15 IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFV 70

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.8 bits (80), Expect = 3e-04
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 3  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
            G +++  +K+ +     +  PD + + L   G+ LKD   +   G++ G  V
Sbjct: 34 SLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTV 87

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 4e-04
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 1  MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDVKSLGLKNGDMV 56
           + S    V+D+ + V      +    Q  +L  KGK LK     + +LG+++G  V
Sbjct: 20 QQGSSEPVVQDLAQVVE-EVIGVPQSFQ--KLIFKGKSLKEMETPLSALGIQDGCRV 73

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.3 bits (73), Expect = 0.003
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 1  MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSD-DVKSLGLKNGDMVFI 58
          ++V+  F + + +      +S +  +    ++    ++L D    + S GLK+GDMV +
Sbjct: 26 LQVNPDFELSNFRVLCE-LESGVPAEEA--QIVYMEQLLTDDHCSLGSYGLKDGDMVVL 81

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (72), Expect = 0.003
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 1  MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKN 52
            V     VK+ K+ +      +  ++Q  RL  +G++L+D   ++   +  
Sbjct: 15 FIVGAQMNVKEFKEHIAA-SVSIPSEKQ--RLIYQGRVLQDDKKLQEYNVGG 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.66
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.65
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.65
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.65
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.65
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.64
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.64
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.63
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.62
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.61
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.61
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.6
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.6
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.59
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.59
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.55
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.55
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.53
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.53
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.51
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.51
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.5
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.49
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.48
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.47
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.43
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.42
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.41
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.37
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.35
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.33
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.32
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.26
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.1
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	98.8
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.41
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	97.6
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	95.98
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	95.88
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	95.8
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.38
d1y8xb1	92	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.28
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	94.73
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	83.72

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.66  E-value=5.2e-17  Score=99.39  Aligned_cols=55  Identities=24%  Similarity=0.433  Sum_probs=52.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||+++|++|++ +.|+++++|||+  |+|+.|+|++||++|||++|++||+
T Consensus        15 l~V~~~~tV~~lK~~i~~-~~gi~~~~qrLi--~~Gk~L~d~~tL~~y~I~~~sti~l   69 (73)
T d1bt0a_          15 IDIEPTDTIDRIKERVEE-KEGIPPVQQRLI--YAGKQLADDKTAKDYNIEGGSVLHL   69 (73)
T ss_dssp             EECCTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HhCCChHHEEEE--ECCeEcCCCCcHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999999985

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=5.2e-17  Score=99.53  Aligned_cols=55  Identities=29%  Similarity=0.422  Sum_probs=52.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ ..|+|+++|||+  |+|+.|+|++||++|||++|++||+
T Consensus        15 i~v~~~~tV~~lK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~~~I~~g~~i~l   69 (73)
T d2bwfa1          15 VNVAPESTVLQFKEAINK-ANGIPVANQRLI--YSGKILKDDQTVESYHIQDGHSVHL   69 (73)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             EEECCCChHHHHHHHHHH-HHCcChHHeEEE--ECCeEccCCCcHHHCCCCCCCEEEE
Confidence            478999999999999999 689999999999  9999999999999999999999985

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.5e-17  Score=99.53  Aligned_cols=55  Identities=29%  Similarity=0.303  Sum_probs=52.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ +.|+++++|||+  ++|+.|+|++||++|||++|++||+
T Consensus        18 l~v~~~~tV~~lK~~I~~-~~gi~~~~qrL~--~~gk~L~d~~tL~~y~I~~~sti~l   72 (76)
T d1z2ma2          18 YEVRLTQTVAHLKQQVSG-LEGVQDDLFWLT--FEGKPLEDQLPLGEYGLKPLSTVFM   72 (76)
T ss_dssp             EEECTTSBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HhcCChhHeEEE--ECCeECCCCCcHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999999985

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=6.3e-17  Score=99.33  Aligned_cols=55  Identities=16%  Similarity=0.244  Sum_probs=52.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|+|++||++||++|++ ..++|+++|||.  ++|+.|+|+.||++|||++|+||++
T Consensus        16 v~V~~~~tV~~lK~~I~~-~~~i~~~~q~Li--~~Gk~L~d~~tL~~y~I~~gstl~L   70 (73)
T d1m94a_          16 VKCLAEDSVGDFKKVLSL-QIGTQPNKIVLQ--KGGSVLKDHISLEDYEVHDQTNLEL   70 (73)
T ss_dssp             EEECTTSBHHHHHHHHHH-HHCCTTTSEEEE--SSSCEECTTSBHHHHTCCTTEEEEE
T ss_pred             EEECCcCcHHHHHHHHHH-hhcccccEEEEE--EEeEEecccCcHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999999  9999999999999999999999975

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.6e-17  Score=99.65  Aligned_cols=57  Identities=25%  Similarity=0.384  Sum_probs=52.4

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ ..|+|+++|||+...+|+.|+|++||++|||++|++|++
T Consensus        15 v~V~~~~tV~~lK~~I~~-~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~l   71 (76)
T d1z2ma1          15 VSLSSSMSVSELKAQITQ-KIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLL   71 (76)
T ss_dssp             EECCSSCCHHHHHHHHHH-HHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999999444899999999999999999999975

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=7.7e-17  Score=100.13  Aligned_cols=55  Identities=25%  Similarity=0.346  Sum_probs=52.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ +.|+|+++|||+  |+|+.|+|++||++|||+++++||+
T Consensus        17 l~v~~~~tV~~lK~~i~~-~~gip~~~qrLi--~~Gk~L~d~~tL~~y~I~~~sti~l   71 (78)
T d2zeqa1          17 VEVDSDTSILQLKEVVAK-RQGVPADQLRVI--FAGKELPNHLTVQNCDLEQQSIVHI   71 (78)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHTCCGGGEEEE--ETTEEECTTCBGGGSSCCTTCEEEE
T ss_pred             EEEcccccHHHHHHHHHH-HHCcChhHeEEE--EeeeEcCCCCCHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999999986

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1e-16  Score=101.16  Aligned_cols=55  Identities=15%  Similarity=0.358  Sum_probs=52.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ +.++|+++|||+  |+||.|+|++||++|||+++++|++
T Consensus        22 l~v~~~~tV~~lK~~I~~-~~gip~~~qrLi--~~Gk~L~d~~tL~~y~I~~~stl~l   76 (87)
T d1wh3a_          22 YAINPNSFILGLKQQIED-QQGLPKKQQQLE--FQGQVLQDWLGLGIYGIQDSDTLIL   76 (87)
T ss_dssp             EEECSSSBHHHHHHHHHH-HTCCCTTTEEEE--ETTEECCSSSBHHHHTCCTTEEEEE
T ss_pred             EEECCcCcHHHHHHHHHH-HHCcChHHeEEE--eeceEcCCCCcHHHcCCCCCCEEEE
Confidence            478999999999999999 799999999999  9999999999999999999999985

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.1e-16  Score=98.28  Aligned_cols=55  Identities=22%  Similarity=0.285  Sum_probs=52.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ +.++|+++|||+  |+|+.|+|++||++|||++|++||+
T Consensus        18 l~V~~~~tV~~lK~~I~~-~~~ip~~~qrLi--~~Gk~L~d~~tL~~y~I~~~sti~l   72 (80)
T d1ttna1          18 LVVRSTDTVFHMKRRLHA-AEGVEPGSQRWF--FSGRPLTDKMKFEELKIPKDYVVQV   72 (80)
T ss_dssp             EEECTTSHHHHHHHHHHH-TTCCCSTTCEEE--ETTEECCTTSHHHHCCCSSSCEEEE
T ss_pred             EEECCcCcHHHHHHHHHH-HhCCCcccEEEE--ECceEcCCCCcHHHcCCCCCCEEEE
Confidence            478999999999999999 799999999998  9999999999999999999999985

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2e-16  Score=97.38  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=51.9

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ +.++|+++|||.  |+|+.|+|++||++|||++|++|++
T Consensus        15 l~v~~~~tV~~lK~~I~~-~~gi~~~~qrL~--~~Gk~L~d~~tL~~y~i~~~s~I~L   69 (76)
T d1ogwa_          15 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL   69 (76)
T ss_dssp             EECCTTSBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             EEECCCCcHHHHHHhhhh-hcCCChHHEEeE--ECCeEcCCCCCHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999999  9999999999999999999999874

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.4e-16  Score=96.85  Aligned_cols=54  Identities=19%  Similarity=0.318  Sum_probs=51.5

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +|++++||++||++|++ +.|+|+++|||+  ++|+.|+|++||++|||++|++||+
T Consensus        18 ~v~~~~TV~~lK~~I~~-~~gip~~~qrLi--~~Gk~L~d~~tL~~y~I~~~s~i~l   71 (76)
T d1wy8a1          18 DVSRKATIEELRERVWA-LFDVRPECQRLF--YRGKQLENGYTLFDYDVGLNDIIQL   71 (76)
T ss_dssp             EECTTCBHHHHHHHHHH-HSCCCTTTEEEE--ETTEECCSSSBHHHHTCCTTCEEEE
T ss_pred             ccCCCChHHHHHHHHHH-HHCCCchhcEEE--EEeeEecCCCCHHHcCCCCCCEEEE
Confidence            48999999999999999 699999999999  9999999999999999999999985

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.9e-16  Score=99.28  Aligned_cols=55  Identities=20%  Similarity=0.388  Sum_probs=52.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ +.++|+++|+|+  |+|+.|+|++||++|||++|++|++
T Consensus        26 l~v~~~~tV~~lK~~I~~-~~~ip~~~q~Li--~~Gk~L~D~~tL~dY~I~~gsti~l   80 (86)
T d1zkha1          26 FTLPLTDQVSVIKVKIHE-ATGMPAGKQKLQ--YEGIFIKDSNSLAYYNMANGAVIHL   80 (86)
T ss_dssp             EEECTTSBHHHHHHHHHH-HTCCCTTTEEEE--ETTEEECTTSBHHHHTCCTTEEEEE
T ss_pred             EEECCCChHHHHHHHHHh-hhcCChHHEEEE--eCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            478999999999999999 699999999998  9999999999999999999999884

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.3e-16  Score=96.92  Aligned_cols=54  Identities=15%  Similarity=0.308  Sum_probs=51.1

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      .+++++||++||++|++ +.|+|+++|||+  |+|+.|+|++||++|||++|++||+
T Consensus        18 ~v~~~~tV~~lK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~y~I~~~sti~l   71 (76)
T d2faza1          18 SLSRLTKVEELRRKIQE-LFHVEPGLQRLF--YRGKQMEDGHTLFDYEVRLNDTIQL   71 (76)
T ss_dssp             EECTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTCBTTTTTCCTTCEEEE
T ss_pred             cCCCCCCHHHHHHHHHH-HHCcChHHeEEE--EeeEeccCCCcHHHcCCCCCCEEEE
Confidence            37899999999999999 689999999999  9999999999999999999999985

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.6e-16  Score=96.05  Aligned_cols=55  Identities=20%  Similarity=0.319  Sum_probs=50.6

Q ss_pred             CcccCCCcHHHHHHHHHhHhCC---CCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQ---LYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~---i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|+|++||++||++|++ ..|   +|+++|||+  |+|+.|+|++||++|||+++++|++
T Consensus        17 l~v~~~~TV~~lK~~i~~-~~g~~~i~~~~qrLi--~~Gk~L~D~~tL~~y~I~~~s~i~~   74 (77)
T d1oqya4          17 IRMEPDETVKVLKEKIEA-EKGRDAFPVAGQKLI--YAGKILSDDVPIRDYRIDEKNFVVV   74 (77)
T ss_dssp             ECCCTTCBHHHHHHHHHH-HTCSSSCCSTEEEEE--SSSSEECSSSBTTTTCCCTTSCEEE
T ss_pred             EEECCCCcHHHHHHHHHH-hcCCCCCChHHEEeE--ECCcCccCCCcHHHcCCCCCCEEEE
Confidence            478999999999999998 455   899999999  9999999999999999999998875

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=3e-16  Score=98.32  Aligned_cols=55  Identities=27%  Similarity=0.430  Sum_probs=51.9

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||.+||++|++ ..++++++|||.  |+|+.|+|+++|++|||++|++|++
T Consensus        24 i~v~~~~tV~~lK~~I~~-~~~v~~~~qrL~--f~Gk~L~d~~tL~~~gI~~gs~I~l   78 (83)
T d1wx8a1          24 FFLAENSNVRRFKKQISK-YLHCNADRLVLI--FTGKILRDQDILSQRGILDGSTVHV   78 (83)
T ss_dssp             EEEETTCCHHHHHHHHHH-HTCSCTTTBCCE--ETTEECCTTSCHHHHTCCTTEEEEC
T ss_pred             EEECCCChHHHHHHHHHH-HhCCChhHEEEE--EEhhccccCCcHHHcCCCCCCEEEE
Confidence            468899999999999999 699999999998  9999999999999999999999984

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=3.8e-16  Score=101.51  Aligned_cols=55  Identities=15%  Similarity=0.169  Sum_probs=52.0

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      |+|+|++||++||++|++ +.++|+++|||+  ++|+.|+|+.||++|||++|++|++
T Consensus        43 v~V~p~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~dygI~~GstI~L   97 (100)
T d1uh6a_          43 VKCNTDDTIGDLKKLIAA-QTGTRWNKIVLK--KWYTIFKDHVSLGDYEIHDGMNLEL   97 (100)
T ss_dssp             EEEETTSBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCSSCBHHHHTCCTTEEEEE
T ss_pred             EEECCcChHHHHHHHHHH-HHCCCcceEEEE--EEeecccCcCCHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999999  9999999999999999999999864

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.5e-16  Score=97.65  Aligned_cols=55  Identities=29%  Similarity=0.569  Sum_probs=52.0

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ +.++++++|||.  |+|+.|+|++||++|||++|++|++
T Consensus        21 ~~V~~~~tV~~lK~~i~~-~~gi~~~~qrL~--~~Gk~L~D~~tL~~y~i~~gsti~l   75 (84)
T d1yqba1          21 FSVTDTCTIQQLKEEISQ-RFKAHPDQLVLI--FAGKILKDPDSLAQCGVRDGLTVHL   75 (84)
T ss_dssp             EEEETTCBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTSBHHHHTCCTTCEEEE
T ss_pred             EEECCCCcHHHHHHHHHH-HHCcCchhEEEE--EeeeeccccCcHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999999  9999999999999999999999985

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.7e-16  Score=96.33  Aligned_cols=54  Identities=17%  Similarity=0.460  Sum_probs=50.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|++ +.|+|+++|||+  |+|+.|+|+++|++||+ ++++||+
T Consensus        15 l~V~~~~tV~~lK~~I~~-~~gip~~~qrLi--~~Gk~L~d~~tL~dy~i-~~~ti~l   68 (73)
T d1wx9a1          15 FIVGAQMNVKEFKEHIAA-SVSIPSEKQRLI--YQGRVLQDDKKLQEYNV-GGKVIHL   68 (73)
T ss_dssp             EEECTTSBHHHHHHHHHH-HHCCCTTTCCCE--ETTEECCSSSBHHHHTC-TTEEEBC
T ss_pred             EEECCCChHHHHHHHHHH-HhCCChHHEEEE--ECCeEccCCCCHHHhCC-CCCEEEE
Confidence            478999999999999999 689999999998  99999999999999999 5788874

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.1e-15  Score=97.75  Aligned_cols=55  Identities=27%  Similarity=0.442  Sum_probs=52.1

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||.+||++|++ ..++++++|||+  |+|+.|+|+++|++|||++|++||+
T Consensus        46 i~V~~~~tV~~LK~~I~~-~~gi~~~~qrLi--~~Gk~L~D~~tL~~~~I~~g~~I~l  100 (103)
T d1j8ca_          46 FAVPENSSVQQFKEAISK-RFKSQTDQLVLI--FAGKILKDQDTLIQHGIHDGLTVHL  100 (103)
T ss_dssp             EEECTTCCHHHHHHHHHH-HHCSCSSSEEEE--ETTEEESTTSCGGGTTCSSSEEEEE
T ss_pred             EEECCCChHHHHHHHHHH-HHCcCHHHeeee--eeeecccCCCcHHHcCCCCCCEEEE
Confidence            478999999999999999 689999999998  9999999999999999999999985

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.8e-15  Score=95.64  Aligned_cols=56  Identities=23%  Similarity=0.390  Sum_probs=50.5

Q ss_pred             CcccCCCcHHHHHHHHHhHh--CCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAK--SQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~--~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      ++|++++||++||++|+++.  .++++++|||+  |+|+.|+|++||++|||++|++|++
T Consensus        15 l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi--~~Gk~L~d~~tL~~y~I~~~s~i~l   72 (95)
T d1uela_          15 IDIDPEETVKALKEKIESEKGKDAFPVAGQKLI--YAGKILNDDTALKEYKIDEKNFVVV   72 (95)
T ss_dssp             EECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE--ETTEECCTTSBGGGGTCCSSSEEEE
T ss_pred             EEECCCccHHHHHHHHHhhhcccCCCccceEEE--ECCeEccCCCcHHHcCCCCCCEEEE
Confidence            47899999999999999842  24899999999  9999999999999999999999874

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.9e-15  Score=96.49  Aligned_cols=57  Identities=12%  Similarity=0.204  Sum_probs=53.2

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD   60 (107)
                      ++|++++||++||++|++ +.++++++|||+  |+|+.|+|++||++|||+++++|++--
T Consensus        34 lev~~~~TV~~LK~~I~~-~~gi~~~~qkLi--~~Gk~L~d~~tL~~~gI~~~s~i~vi~   90 (100)
T d1wjua_          34 LETRLHITGRELRSKIAE-TFGLQENYIKIV--INKKQLQLGKTLEEQGVAHNVKAMVLE   90 (100)
T ss_dssp             EEEESSSBHHHHHHHHHH-HTTCCSTTCEEE--ETTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred             EEECCCcHHHHHHHHHHH-HHCCCCeeEEEE--EcccCcCCCcCHHHcCCCCCCEEEEEE
Confidence            578999999999999999 699999999999  999999999999999999999998643

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.53  E-value=5.8e-15  Score=97.37  Aligned_cols=54  Identities=20%  Similarity=0.320  Sum_probs=50.3

Q ss_pred             cccC-CCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSG-SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~-~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +|.+ ++||.+||++|++ +.++|+++|||.  |+|+.|+|+.||++|||++|++||+
T Consensus        46 ~v~~~sdtV~~lK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~ynI~~gsti~L  100 (111)
T d1we6a_          46 TVQSLSENVGSLKEKIAG-EIQIPANKQKLS--GKAGFLKDNMSLAHYNVGAGEILTL  100 (111)
T ss_dssp             EESCSSSBHHHHHHHHHH-HTTCCTTTSEEE--CSSSBCCTTSBTTTTTCSSSCEEEE
T ss_pred             EecCCccHHHHHHHHHHH-HHCCCccceEEE--EeeEEccccCCHHHcCCCCCCEEEE
Confidence            5666 8999999999999 699999999999  9999999999999999999999874

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=7.4e-15  Score=95.44  Aligned_cols=56  Identities=23%  Similarity=0.402  Sum_probs=51.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC-CcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~-D~ktL~~~gi~~g~tL~vK   59 (107)
                      |+|++++||++||++|+. +.++|+++|||+  |+|+.|+ |++||++|||++|++|++.
T Consensus        26 l~V~~~~tV~~LK~~Ie~-~~gip~~~Q~Li--~~Gk~L~dd~~tL~~~gI~~g~~i~l~   82 (102)
T d1v5oa_          26 LQVNPDFELSNFRVLCEL-ESGVPAEEAQIV--YMEQLLTDDHCSLGSYGLKDGDMVVLL   82 (102)
T ss_dssp             EEECTTCBHHHHHHHHHH-HTCCCGGGBCEE--ETTEEECCSSSBHHHHTCCTTEEEEEC
T ss_pred             EEECCcccHHHHHHHHHH-HhCCCcceEEEE--eCCeEeecccCCHHHcCCCCCCEEEEE
Confidence            479999999999999999 699999999999  9999996 5679999999999999864

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.3e-14  Score=90.54  Aligned_cols=54  Identities=26%  Similarity=0.326  Sum_probs=49.4

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC-CcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~-D~ktL~~~gi~~g~tL~v   58 (107)
                      ++++++||++||++|++ ..|+|+++|+|.  ++|+.|+ |+++|++||+++|++|++
T Consensus        21 ~~~~~~Tv~~LK~~I~~-~tgvp~~~QkL~--~~G~~L~~d~~tL~~~gi~~g~~i~l   75 (81)
T d1wxva1          21 QGSSEPVVQDLAQVVEE-VIGVPQSFQKLI--FKGKSLKEMETPLSALGIQDGCRVML   75 (81)
T ss_dssp             SSSSSCBHHHHHHHHHH-HTCCCTTTCEEE--ETTEEECCSSSBHHHHTCCSSEEEEE
T ss_pred             CCCCccHHHHHHHHHHH-HHCcCHHHEEee--ecCeEeCcCCCChHHCCCCCCCEEEE
Confidence            45689999999999999 699999999998  9999996 568999999999999976

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.7e-14  Score=91.22  Aligned_cols=57  Identities=25%  Similarity=0.336  Sum_probs=52.1

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEe-ccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRL-EIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l-~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      +|++++||++||++|++ ..++|+++|||+. .++|+.|+|+++|++|||++|++|++-
T Consensus        23 ~v~~~~tV~~LK~~i~~-~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv   80 (90)
T d1v5ta_          23 TLSEDDTVLDLKQFLKT-LTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMM   80 (90)
T ss_dssp             SCCSSSBHHHHHHHHHH-HTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEE
T ss_pred             EeCCCCcHHHHHHHHHH-HHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEE
Confidence            68999999999999999 6999999999973 258999999999999999999999863

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=8.7e-15  Score=93.94  Aligned_cols=54  Identities=30%  Similarity=0.412  Sum_probs=50.6

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      |+|++++||++||++|++ ..++++++|||+  |+|+.|+|+ +|++|||++|++|++
T Consensus        22 v~v~~~~tV~~lK~~i~~-~~gvp~~~QkLi--~~Gk~L~d~-tL~~~gi~~g~~i~l   75 (96)
T d1wgga_          22 VELNTDEPPMVFKAQLFA-LTGVQPARQKVM--VKGGTLKDD-DWGNIKMKNGMTVLM   75 (96)
T ss_dssp             EEEESSSCHHHHHHHHHH-HTCCCTTTSCCE--ETTEECCSS-CCCSCCCCSSCEEEC
T ss_pred             EEECCCCcHHHHHHHhhh-hcCccceeeEEe--ecCcccCCC-cHHHCCCCCCCEEEE
Confidence            478999999999999999 699999999998  999999986 799999999999986

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=9.2e-15  Score=93.65  Aligned_cols=55  Identities=20%  Similarity=0.370  Sum_probs=51.0

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      |+|++++||.+||++|++ ..++|+++|||+  ++|+ |+|++||++|+|++|++|++-
T Consensus        31 i~v~~~~TV~~LK~~I~~-~tgvp~~~q~Li--~~g~-l~D~~tL~~~~I~~gs~i~lv   85 (95)
T d1v86a_          31 VKVPLDSTGSELKQKIHS-ITGLPPAMQKVM--YKGL-VPEDKTLREIKVTSGAKIMVV   85 (95)
T ss_dssp             EEECTTSBHHHHHHHHHH-HHCSCSTTCCCB--SSSB-CCSSSBHHHHCCCTTEEEEEC
T ss_pred             EEECCCCcHHHHHHHHHH-HhCCChhHEEEE--eccc-ccCCCcHHHCCCCCCCEEEEE
Confidence            478999999999999999 689999999998  8887 999999999999999999874

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.2e-14  Score=92.21  Aligned_cols=62  Identities=19%  Similarity=0.336  Sum_probs=54.6

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCe-------ecC-CcchhhhcCCCCCceEEEeccCCcch
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK-------ILK-DSDDVKSLGLKNGDMVFIKDLGPQIG   66 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk-------~L~-D~ktL~~~gi~~g~tL~vKDlGpQi~   66 (107)
                      +|++++||.+||.+|++ ..|+|+++|||.  +.|+       .|+ |+++|.+|||++|++|+|+|-||+-|
T Consensus        28 kv~~~~TV~~LK~~i~~-~~gip~~~qrL~--y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V~~~~P~~~   97 (97)
T d1wjna_          28 QLPDSMTVQKVKGLLSR-LLKVPVSELLLS--YESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSGPSSG   97 (97)
T ss_dssp             EEETTSBHHHHHHHHHT-TTTCCTTTCEEE--EECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCSSCCC
T ss_pred             EcCCCCCHHHHHHHHHH-HHCcChHHeEEE--ecCCCCCcccceecCCCcCHhhccCCCCCEEEEEeCCCCCC
Confidence            57899999999999999 799999999998  5554       254 78899999999999999999999753

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=9.6e-15  Score=95.32  Aligned_cols=51  Identities=22%  Similarity=0.280  Sum_probs=47.3

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCc
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD   54 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~   54 (107)
                      ++|++++||++||++|++ +.|+++++|||+  ++|+.|+|++||++|||.+++
T Consensus        15 l~v~~~~TV~~lK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~TL~dYgI~~~~   65 (103)
T d2c9wb1          15 TDAKESSTVFELKRIVEG-ILKRPPDEQRLY--KDDQLLDDGKTLGECGFTSQT   65 (103)
T ss_dssp             EEECTTSBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBHHHHTCCTTT
T ss_pred             EEeCCCCcHHHHHHHHHH-HhCCCcccEEEE--ECCEEcCCCCCHHHcCCCccc
Confidence            478999999999999999 699999999998  999999999999999996643

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.43  E-value=9e-14  Score=90.41  Aligned_cols=51  Identities=22%  Similarity=0.207  Sum_probs=45.9

Q ss_pred             cccCCCcHHHHHHHHHhH----hCCCC--ccceeEEeccCCeecCCcchhhhcCCCCCc
Q psy12731          2 EVSGSFTVKDIKKEVHKA----KSQLY--PDRQAVRLEIKGKILKDSDDVKSLGLKNGD   54 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~----~~~i~--~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~   54 (107)
                      .+++++||.+||++|++.    +.++|  +++|||+  |+||.|+|++||++|+|.+|+
T Consensus        24 ~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLI--f~Gk~L~D~~tL~dy~i~~g~   80 (101)
T d1se9a_          24 AFPDATTVSALKETVISEWPREKENGPKTVKEVKLI--SAGKVLENSKTVKDYRSPVSN   80 (101)
T ss_dssp             EECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE--ETTEECCTTSBGGGGSCCTTS
T ss_pred             ecCccCHHHHHHHHHHHhccccccCCCCCcccEEEE--ECCeEecCCCCHHHcCCCCCC
Confidence            578999999999999873    25777  8899999  999999999999999999995

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=6.5e-14  Score=92.96  Aligned_cols=52  Identities=21%  Similarity=0.243  Sum_probs=47.6

Q ss_pred             CcccCCCcHHHHHHHHH--------hHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCce
Q psy12731          1 MEVSGSFTVKDIKKEVH--------KAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDM   55 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~--------~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~t   55 (107)
                      ++|+|++||.+||++|.        + ..++++++|||+  |.||.|+|++||++|+|.+|++
T Consensus        31 ~~v~p~~TV~~lK~~I~~~~p~~~~e-~~~~~~~~qRLi--y~Gk~L~D~~tL~~~~i~~g~~   90 (116)
T d1wgha_          31 FLFSPNDSASDIAKHVYDNWPMDWEE-EQVSSPNILRLI--YQGRFLHGNVTLGALKLPFGKT   90 (116)
T ss_dssp             EEECTTCBHHHHHHHHHHSSSCCSSC-CCCCCTTTEEEE--ETTEEECSSCBTTTTTCCSSCE
T ss_pred             EEECCcchHHHHHHHHHhhccccccc-ccCCChHHeEEE--ECCEEecCCCCHHHcCCCCCCE
Confidence            46899999999999994        4 578999999999  9999999999999999999975

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.5e-14  Score=94.31  Aligned_cols=60  Identities=30%  Similarity=0.459  Sum_probs=51.4

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCcccee-------------EEeccCCeecCCc-chhhhcCCCCCceEEE-ecc
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQA-------------VRLEIKGKILKDS-DDVKSLGLKNGDMVFI-KDL   61 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQr-------------L~l~~~Gk~L~D~-ktL~~~gi~~g~tL~v-KDl   61 (107)
                      |+|++++||++||++|++ ..+++++|||             +.|.|+|+.|.|+ .||++|||++|++||+ +-+
T Consensus        22 v~V~~~~TV~~LK~~I~~-~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~~g~~l~lv~r~   96 (105)
T d1v2ya_          22 VVVVQNATVLDLKKAIQR-YVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL   96 (105)
T ss_dssp             EEECTTCBHHHHHHHHHH-HHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEECS
T ss_pred             EEECCCChHHHHHHHHHH-HHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCCCCCEEEEEEec
Confidence            578999999999999999 6899999998             2333999999766 5999999999999985 434

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.2e-13  Score=85.53  Aligned_cols=56  Identities=18%  Similarity=0.315  Sum_probs=47.0

Q ss_pred             CcccCCCcHHHHHHHHHhHh-CCCCccceeEEeccCCeecCCcchhhhcCCCC--CceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAK-SQLYPDRQAVRLEIKGKILKDSDDVKSLGLKN--GDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~-~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~--g~tL~v   58 (107)
                      +++++++||++||++|+++. ..+++++|||+  |+||.|+|+++|++|+.+.  +.+||+
T Consensus        24 ~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLI--y~Gk~L~D~~~L~d~~~~~~~~~viHL   82 (93)
T d1wgda_          24 LSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI--YSGKLLLDHQCLRDLLPKQEKRHVLHL   82 (93)
T ss_dssp             EECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE--ETTEECCSSSCHHHHSCSSSCSEEEEE
T ss_pred             EEcCCCCcHHHHHHHHHHHcCCCCChHHEEEE--ECCeEccCCCCHHHhCcccCCCCEEEE
Confidence            46789999999999999842 24899999999  9999999999999997654  446663

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=8.3e-13  Score=84.75  Aligned_cols=53  Identities=19%  Similarity=0.364  Sum_probs=46.1

Q ss_pred             cCCCcHHHHHHHHHhHhC-CC-CccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          4 SGSFTVKDIKKEVHKAKS-QL-YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         4 ~~~~TV~~LK~~I~~~~~-~i-~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      +.+.||.+||++|+++.+ +. ++++|||+  |+||.|+|++||++|||++|+|||+
T Consensus        35 ~~~~tV~~lK~~i~~~~~~~~P~p~~~rLI--y~Gk~L~D~~tL~~y~I~~gstihL   89 (94)
T d1x1ma1          35 LGGYSISFLKQLIAGKLQESVPDPELIDLI--YCGRKLKDDQTLDFYGIQPGSTVHV   89 (94)
T ss_dssp             CCCCBHHHHHHHHHHHCTTTCCCSSSEEEE--ETTEECCTTCBHHHHTCCTTCEEEE
T ss_pred             CCccCHHHHHHHHHHHcccCCCChhheEEE--ECCeEECCCccHHHcCCCCCCEEEE
Confidence            457799999999998432 33 47999999  9999999999999999999999985

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=6.9e-13  Score=84.88  Aligned_cols=59  Identities=14%  Similarity=0.146  Sum_probs=52.4

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCe-------ecCCcchhhhcCCCCCceEEEeccCC
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK-------ILKDSDDVKSLGLKNGDMVFIKDLGP   63 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk-------~L~D~ktL~~~gi~~g~tL~vKDlGp   63 (107)
                      .++++.||.+||++|+. ..|+|+++|||.  +.|+       .++|+++|++||+.+|++||+-|--|
T Consensus        24 r~~~~~TV~~LK~kle~-~tGip~~~qrL~--~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlvd~~p   89 (95)
T d1v6ea_          24 RYSRSLTIAEFKCKLEL-VVGSPASCMELE--LYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSG   89 (95)
T ss_dssp             EECTTSBHHHHHHHHHH-HTCSCTTTCBCE--EECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCSC
T ss_pred             EeCCCCCHHHHHHHHHH-HhCcCchhEEEE--EeCCCCceeecccCCcCCHHHCCCCCCCEEEEEeCCC
Confidence            47899999999999999 799999999998  5454       46899999999999999999988755

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=5.6e-13  Score=85.44  Aligned_cols=52  Identities=15%  Similarity=0.191  Sum_probs=46.4

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC-CcchhhhcCCCCCceEEE
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~-D~ktL~~~gi~~g~tL~v   58 (107)
                      |+|++++||++||++|++    .++++|||+  |+|+.|. |.++|++|||++|++||+
T Consensus        22 v~v~~~~TV~~lK~~i~~----~~~~~qrLi--~~Gk~L~dd~~tL~~y~i~~g~~v~l   74 (95)
T d1wiaa_          22 AVARPEDTVGTLKSKYFP----GQESQMKLI--YQGRLLQDPARTLSSLNITNNCVIHC   74 (95)
T ss_dssp             EEECSSSBHHHHHHHHSS----STTTTCEEE--ETTEECCCSSCBTTTTTCCTTEEEEE
T ss_pred             EEECCcCcHHHHHHHHhc----CCcceeEEE--ECCEEcccCCCCHHHcCCCCCCEEEE
Confidence            478999999999999876    467999998  9999996 568999999999999985

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.26  E-value=2.7e-12  Score=81.22  Aligned_cols=59  Identities=15%  Similarity=0.301  Sum_probs=51.0

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCe-------ecCCcchhhhcCCCCCceEEEeccCC
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK-------ILKDSDDVKSLGLKNGDMVFIKDLGP   63 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk-------~L~D~ktL~~~gi~~g~tL~vKDlGp   63 (107)
                      .++++.||.+||++|+. ..|+|+++|||.  +.|+       .++|+++|.+|||.+|++|||.|.-+
T Consensus        21 r~~~~~TV~~LK~kle~-~~Gip~~~q~L~--~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~~~   86 (90)
T d1t0ya_          21 KYPAGMSLNDLKKKLEL-VVGTTVDSMRIQ--LFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTG   86 (90)
T ss_dssp             EEETTSBHHHHHHHHHH-HHCCCTTTEEEE--EECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECTT
T ss_pred             ecCCCCCHHHHHHHHHH-HHCCChhheEEE--EeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeCCC
Confidence            36899999999999999 689999999998  4343       34688999999999999999999854

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.10  E-value=4e-11  Score=73.68  Aligned_cols=54  Identities=9%  Similarity=0.190  Sum_probs=50.8

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      .|.+++++..||+++++ +.++++++|||+  |+|+.|++++|+++||+++|++|++
T Consensus        19 ~v~~~~~~~~l~~~~~~-~~~i~~~~~~l~--f~G~~l~~~~T~~~~~i~dgd~I~v   72 (79)
T d1euvb_          19 KIKKTTPLRRLMEAFAK-RQGKEMDSLRFL--YDGIRIQADQTPEDLDMEDNDIIEA   72 (79)
T ss_dssp             EEETTSCTHHHHHHHHH-HTTCCGGGEEEE--ETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred             EECCCCcHHHHHHHHHH-HhCCChHhEEEE--ECCEEeCCCCCHHHCCCCCCCEEEE
Confidence            57899999999999999 699999999998  9999999999999999999999874

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.2e-09  Score=65.45  Aligned_cols=54  Identities=17%  Similarity=0.306  Sum_probs=50.1

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      .|.+++++..|++++++ +.+++++++||+  |+|+.|.+++|++++++++|++|.+
T Consensus        18 ~v~~~t~l~kl~~~y~~-~~~~~~~~~~f~--fdG~~l~~~~T~~~l~~edgD~Idv   71 (77)
T d2uyzb1          18 KVKMTTHLKKLKESYCQ-RQGVPMNSLRFL--FEGQRIADNHTPKELGMEEEDVIEV   71 (77)
T ss_dssp             EEETTSCTHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTCCHHHHTCCTTEEEEE
T ss_pred             EECCCChHHHHHHHHHH-HhCCChhHEEEE--ECCEECCCCCCHHHcCCCCCCEEEE
Confidence            46789999999999999 689999999998  9999999999999999999999864

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.41  E-value=1.1e-07  Score=60.07  Aligned_cols=58  Identities=22%  Similarity=0.324  Sum_probs=46.1

Q ss_pred             Cccc-CCCcHHHHHHHHHhHhCCCCccceeEEec-----------c-CCeecCCc-chhhhcCCCCCceEEEe
Q psy12731          1 MEVS-GSFTVKDIKKEVHKAKSQLYPDRQAVRLE-----------I-KGKILKDS-DDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~-~~~TV~~LK~~I~~~~~~i~~~rQrL~l~-----------~-~Gk~L~D~-ktL~~~gi~~g~tL~vK   59 (107)
                      |+|+ +++||.+||++|++ ..++|.+.|+|.++           + .-..|+|+ .+|+++||..|+-||++
T Consensus        14 v~v~~~~~Tl~~LK~~Ie~-~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsivyL~   85 (94)
T d1wf9a1          14 VSVDGPHITVSQLKTLIQD-QLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLA   85 (94)
T ss_dssp             EEECCTTSBHHHHHHHHHH-HSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECC
T ss_pred             EEecCCCCcHHHHHHHHHH-HhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceEEEEE
Confidence            4675 47899999999999 69999999999753           1 12346654 46999999999999965

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=3.9e-05  Score=45.47  Aligned_cols=54  Identities=13%  Similarity=0.273  Sum_probs=48.4

Q ss_pred             cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731          2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI   58 (107)
Q Consensus         2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v   58 (107)
                      .|..+++...|.++.++ ..+++++..++.  |+|..+..+.|.+++++++|++|-|
T Consensus        17 ~vk~~t~l~kl~~~y~~-~~~~~~~~~~f~--fdG~~i~~~~Tp~~l~med~D~Idv   70 (72)
T d1wm3a_          17 KIKRHTPLSKLMKAYCE-RQGLSMRQIRFR--FDGQPINETDTPAQLEMEDEDTIDV   70 (72)
T ss_dssp             EECTTSCTHHHHHHHHH-HHTCCTTTCEEE--ETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred             EEcCCChHHHHHHHHHH-HhCCCccceEEE--ECCEEcCCCCCHHHcCCCCCCEEEE
Confidence            46789999999999999 578999888877  9999999999999999999998854

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0039  Score=39.96  Aligned_cols=61  Identities=16%  Similarity=0.238  Sum_probs=48.8

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC---CcchhhhcCCCCCceEEEeccCCcc
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK---DSDDVKSLGLKNGDMVFIKDLGPQI   65 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~---D~ktL~~~gi~~g~tL~vKDlGpQi   65 (107)
                      ...++||.+|.+-+...  +.....-+|...+-.+.|.   .++||++.|+....+|+|+..||.-
T Consensus        60 F~~~~tl~~l~~~v~~~--~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~vee~~~~~  123 (124)
T d1wj4a_          60 LPEQAKLLALVKHVQSK--GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQESGPSS  123 (124)
T ss_dssp             EETTSCHHHHHHHHHHH--HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEECCSTT
T ss_pred             eCCCCcHHHHHHHHHhc--ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEEecCCCC
Confidence            45789999999999873  4556666677666677774   3679999999999999999999863

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.88  E-value=0.011  Score=35.19  Aligned_cols=56  Identities=13%  Similarity=0.203  Sum_probs=48.8

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK   59 (107)
                      |.|+|++|+.++-++.-+ +.|+++++-.|.  +.+|.|+-+-.+.-.|+.+|+.|-+.
T Consensus        15 VKvtP~t~l~~VL~eaC~-k~~~~~~~~~Lk--h~~k~ldLsl~~R~sgLpnnakLELv   70 (76)
T d2al3a1          15 VKVTPSTVLLQVLEDTCR-RQDFNPSEYDLK--FQRTVLDLSLQWRFANLPNNAKLEMV   70 (76)
T ss_dssp             ECCCTTSBHHHHHHHHHH-HTTCCGGGCEEE--ETTEEESSSCBHHHHCCCSSCEEEEE
T ss_pred             EEeCCCcCHHHHHHHHHH-HhCCChhHceee--eCCEEcCccceeeecCCCCCCEEEEE
Confidence            468999999999998888 689999988877  89999999999999999999988643

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.013  Score=34.55  Aligned_cols=56  Identities=11%  Similarity=0.051  Sum_probs=45.6

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC---CcchhhhcCCCCCceEEEec
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK---DSDDVKSLGLKNGDMVFIKD   60 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~---D~ktL~~~gi~~g~tL~vKD   60 (107)
                      ..+++||.+|.+-+.. . +.++..-.|...+-.+.+.   +++||++.|+...++|+|..
T Consensus        22 F~~~~tl~~v~~~v~~-~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq~   80 (82)
T d1h8ca_          22 FLASNKLQIVFDFVAS-K-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   80 (82)
T ss_dssp             ECTTSBHHHHHHHHHH-H-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEEE
T ss_pred             ECCCCcHHHHHHHHHh-c-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEEe
Confidence            4689999999999988 3 5667777787778888884   35799999999999998863

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.38  E-value=0.021  Score=34.31  Aligned_cols=56  Identities=16%  Similarity=0.232  Sum_probs=41.1

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC-CcchhhhcCCCCCceEEEe
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDVKSLGLKNGDMVFIK   59 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~-D~ktL~~~gi~~g~tL~vK   59 (107)
                      ..+++||.+|.+-+....++.....-.|...+-.|.|. +++||++.|+.+ +.|.+|
T Consensus        31 F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~-s~vl~k   87 (89)
T d1i42a_          31 FNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLN-AVIVQR   87 (89)
T ss_dssp             ECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCC-SEEEEE
T ss_pred             ECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcC-ceEEEE
Confidence            56889999999999873345555556676556677885 567999999985 556554

>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.032  Score=34.31  Aligned_cols=61  Identities=20%  Similarity=0.400  Sum_probs=43.5

Q ss_pred             CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCC--ee--------cCC------cchhhhcCCCCCceEEEeccC
Q psy12731          1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG--KI--------LKD------SDDVKSLGLKNGDMVFIKDLG   62 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~G--k~--------L~D------~ktL~~~gi~~g~tL~vKDlG   62 (107)
                      +++++++|..++-+.+.+ .+.+....=.|+...+|  |.        |+.      +++|.+.|+.+|.+|.|-|--
T Consensus         5 l~~~~~~TL~~li~~L~e-~p~~qlk~Psltt~~~g~~ktLYm~~pp~Lee~Tr~NL~k~L~eLgl~dG~ei~VtD~t   81 (92)
T d1y8xb1           5 IQFSPSAKLQEVLDYLTN-SASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVT   81 (92)
T ss_dssp             EECCTTCBHHHHHHHHHH-CTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTT
T ss_pred             EEcCCCCcHHHHHHHHhh-ChHhhccCCceeeecCCCccEEEecCcHHHHHHhhhccccCHHHhCCcCCCEEEEecCC
Confidence            478999999999999999 56554444444422222  22        322      357999999999999999963

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.73  E-value=0.033  Score=33.55  Aligned_cols=59  Identities=7%  Similarity=0.111  Sum_probs=44.6

Q ss_pred             ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC--CcchhhhcCCCCCceEEEeccCC
Q psy12731          3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--DSDDVKSLGLKNGDMVFIKDLGP   63 (107)
Q Consensus         3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~--D~ktL~~~gi~~g~tL~vKDlGp   63 (107)
                      ..+++||++|.+-++..  +.....-+|...+-.+.+.  .++||+++|+...++|+|++.-+
T Consensus        33 F~~~dtl~~l~~fv~~~--~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~~d~   93 (96)
T d2cr5a1          33 FFKSWNSQVLLDWMMKV--GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKEQ   93 (96)
T ss_dssp             EESSSBTHHHHHHHHHH--TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECCC
T ss_pred             ECCcccHHHHHHHHHHh--ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEecCCC
Confidence            45789999999999873  3455565666555556664  36799999999999999987643

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.72  E-value=0.6  Score=26.89  Aligned_cols=20  Identities=25%  Similarity=0.478  Sum_probs=16.6

Q ss_pred             CcccCCCcHHHHHHHHHhHh
Q psy12731          1 MEVSGSFTVKDIKKEVHKAK   20 (107)
Q Consensus         1 vev~~~~TV~~LK~~I~~~~   20 (107)
                      +++++.+||.+|.+.+.++.
T Consensus        23 ~~~~~~~Tv~~l~~~L~~~~   42 (88)
T d1vjka_          23 IELPEGARVRDLIEEIKKRH   42 (88)
T ss_dssp             EEECTTCBHHHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHHHHC
Confidence            35678899999999998853