Psyllid ID: psy12734

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MSKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNPKVNQP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHccHHccccccccccHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHccEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccHHHHHHccccccccccccEEEEEcccccccEEcHHHHHHHHHHHHccccccEccHHHHHHHHHHHHcccEccccccccccccHHHHHHHHHHcHccccccccccc
Coil and Loop (DISEMBL)
MSKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQsnitklsipivsdfrlekELCDDVMIsqwnseglppdelsiqngilstrgchfplcidpqTQALKWIRNredknnlkwnseglppdelsiqngilstrgchfplcidpqTQALKWIRnredknnpkvnqp
Flexible Loop (DISEMBL)
mskyvgamterqklqeeTDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIrnredknnpkvnqp
Low Complexity Region (SEG)
MSKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNPKVNQP
Disordered region (IsUnstruct)
************************LEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWN*******ELSIQNGILSTRGCHFPLCIDPQTQALKWIR*************
Disordered Region (DISOPRED)
*SKYV*AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNPKVN**
Disordered Region (DISEMBL)
**********RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNRED*********
Disordered Region (DISPRO)
*SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNRE**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKYVGAMTExxxxxxxxxxxxxxxxxxxxxISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNPKVNQP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q8IVF4	4471	Dynein heavy chain 10, ax	yes	N/A	0.824	0.040	0.584	7e-54
Q9SMH3	4625	Dynein-1-alpha heavy chai	N/A	N/A	0.797	0.037	0.516	5e-44
Q39575	4485	Dynein gamma chain, flage	N/A	N/A	0.751	0.036	0.380	4e-32
Q8VHE6	4621	Dynein heavy chain 5, axo	no	N/A	0.760	0.035	0.415	5e-31
Q8TE73	4624	Dynein heavy chain 5, axo	no	N/A	0.760	0.035	0.415	1e-30
Q9P225	4427	Dynein heavy chain 2, axo	no	N/A	0.746	0.036	0.388	6e-29
Q91XQ0	4731	Dynein heavy chain 8, axo	no	N/A	0.764	0.035	0.373	2e-28
Q96JB1	4490	Dynein heavy chain 8, axo	no	N/A	0.764	0.036	0.379	3e-28
P0C6F1	4456	Dynein heavy chain 2, axo	no	N/A	0.746	0.036	0.370	3e-27
Q9MBF8	4513	Dynein-1-beta heavy chain	N/A	N/A	0.737	0.035	0.362	1e-26

>sp|Q8IVF4|DYH10_HUMAN Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4

 Score =  210 bits (534), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 107/183 (58%), Positives = 129/183 (70%), Gaps = 4/183 (2%)

Query: 2    SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
            +KY  A+ E+QKLQEE +IM RRL AADKLISGLG E IRW  DL  L   R +L+G CL
Sbjct: 3294 AKYEAAILEKQKLQEEAEIMERRLIAADKLISGLGSENIRWLNDLDELMHRRVKLLGDCL 3353

Query: 62   LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
            L  AFL Y  AFTWEFR +MV   WQ++I +  IP+   FRLE  L DDV IS+W S+GL
Sbjct: 3354 LCAAFLSYEGAFTWEFRDEMVNRIWQNDILEREIPLSQPFRLESLLTDDVEISRWGSQGL 3413

Query: 122  PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNS----EGLPPDELSI 177
            PPDELS+QNGIL+TR   FPLCIDPQ QAL WI+ +E+KNNL+  S    + L   E+SI
Sbjct: 3414 PPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEEKNNLRVASFNDPDFLKQLEMSI 3473

Query: 178  QNG 180
            + G
Sbjct: 3474 KYG 3476

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly (By similarity). Probable inner arm dynein heavy chain.
Homo sapiens (taxid: 9606)

>sp|Q9SMH3|DYH1A_CHLRE Dynein-1-alpha heavy chain, flagellar inner arm I1 complex OS=Chlamydomonas reinhardtii GN=DHC1 PE=1 SV=1

 Score =  177 bits (449), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/178 (51%), Positives = 117/178 (65%), Gaps = 5/178 (2%)

Query: 9    TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLC 68
             E+Q L+ + D+M RRL AA KLI+GLG E+ RWT D+A LE  R++LIG CLL+ +FL 
Sbjct: 3444 AEQQDLKAKADLMERRLIAASKLIAGLGSERERWTRDIADLESRRDRLIGDCLLTSSFLS 3503

Query: 69   YTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSI 128
            YT AFT  +R  MVY  WQ ++    +P+   FRLE  L  DV  + W SEGLP DELSI
Sbjct: 3504 YTGAFTATYRHAMVYEMWQDDVKARGVPVTQPFRLEALLTSDVETTGWASEGLPSDELSI 3563

Query: 129  QNGILSTRGCHFPLCIDPQTQALKWIRNREDK---NNLKW--NSEGLPPDELSIQNGI 181
            QNGIL+ R   +PLCIDPQ QA+ WI++RE K     +K   +S+ L   ELSIQ G 
Sbjct: 3564 QNGILTVRANRWPLCIDPQMQAVNWIKSREGKMLEGKVKTFNDSDFLKQLELSIQYGF 3621

Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Required for assembly of the I1 inner arm complex and its targeting to the appropriate axoneme location. Also required for phototaxis.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q39575|DYHG_CHLRE Dynein gamma chain, flagellar outer arm OS=Chlamydomonas reinhardtii GN=ODA2 PE=1 SV=1

 Score =  138 bits (347), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 99/163 (60%)

Query: 2    SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
            +++  AM  +Q L+++     R++++A+ LI  L  E+ RWTA     +    +L G C 
Sbjct: 3307 AQFDAAMAHKQALEDDAAATQRKMDSANALIGALAGEEARWTAQSKEFDVQIQRLTGDCA 3366

Query: 62   LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
            L+ AF+ Y   F  EFR+ ++  D+  +  KL++P+    ++ K L DD  + +WN +GL
Sbjct: 3367 LASAFVSYLGPFNKEFRELLLNRDFYGDCMKLNVPVTPHLQITKFLVDDSEVGEWNLQGL 3426

Query: 122  PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLK 164
            P DELSIQNGI+ TR   +P+ +DPQ Q  +WI+NRE+ N LK
Sbjct: 3427 PTDELSIQNGIMVTRASRYPVLVDPQGQGREWIKNREEANQLK 3469

Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q8VHE6|DYH5_MOUSE Dynein heavy chain 5, axonemal OS=Mus musculus GN=Dnah5 PE=1 SV=2

 Score =  134 bits (337), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 97/166 (58%), Gaps = 1/166 (0%)

Query: 2    SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
            ++Y  AM E+Q L E+ D    +++ A  LISGL  EK RWT           +L+G  L
Sbjct: 3460 AEYEQAMAEKQTLLEDADRCRHKMQTASTLISGLAGEKERWTEQSKEFAAQTKRLVGDVL 3519

Query: 62   LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
            L+ AFL Y+  F  EFR  +++ DW+  +    IP  +   L + L D   IS+WN +GL
Sbjct: 3520 LATAFLSYSGPFNQEFRDLLLH-DWKKEMKARKIPFGNGLNLNEMLIDAPTISEWNLQGL 3578

Query: 122  PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNS 167
            P D+LSIQNGI+ T+   +PL IDPQTQ   WI+N+E +N L+  S
Sbjct: 3579 PNDDLSIQNGIIVTKASRYPLLIDPQTQGKIWIKNKESQNELQITS 3624

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Required for structural and functional integrity of the cilia of ependymal cells lining the brain ventricles.

Mus musculus (taxid: 10090)

>sp|Q8TE73|DYH5_HUMAN Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 97/166 (58%), Gaps = 1/166 (0%)

Query: 2    SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
            ++Y  AMTE+Q L E+ +    +++ A  LISGL  EK RWT           +L+G  L
Sbjct: 3463 AEYEQAMTEKQTLLEDAERCRHKMQTASTLISGLAGEKERWTEQSQEFAAQTKRLVGDVL 3522

Query: 62   LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
            L+ AFL Y+  F  EFR  ++  DW+  +    IP   +  L + L D   IS+WN +GL
Sbjct: 3523 LATAFLSYSGPFNQEFRD-LLLNDWRKEMKARKIPFGKNLNLSEMLIDAPTISEWNLQGL 3581

Query: 122  PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNS 167
            P D+LSIQNGI+ T+   +PL IDPQTQ   WI+N+E +N L+  S
Sbjct: 3582 PNDDLSIQNGIIVTKASRYPLLIDPQTQGKIWIKNKESRNELQITS 3627

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Required for structural and functional integrity of the cilia of ependymal cells lining the brain ventricles.

Homo sapiens (taxid: 9606)

>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3

 Score =  127 bits (319), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 95/162 (58%)

Query: 3    KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLL 62
            +Y   + ++++L+++++ M  +LE A  L+SGL  EK RW   +  LE++   L+G CLL
Sbjct: 3254 QYDEKLAQKEELRKKSEEMELKLERAGMLVSGLAGEKARWEETVQGLEEDLGYLVGDCLL 3313

Query: 63   SGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLP 122
            + AFL Y   F   +R ++V   W   I +L +P    F ++  LC+   +  WN +GLP
Sbjct: 3314 AAAFLSYMGPFLTNYRDEIVNQIWIGKIWELQVPCSPSFAIDNFLCNPTKVRDWNIQGLP 3373

Query: 123  PDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLK 164
             D  S +NGI+ TRG  + L IDPQ QALKWI+N E    LK
Sbjct: 3374 SDAFSTENGIIVTRGNRWALMIDPQAQALKWIKNMEGGQGLK 3415

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|Q91XQ0|DYH8_MOUSE Dynein heavy chain 8, axonemal OS=Mus musculus GN=Dnahc8 PE=2 SV=2

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 92/166 (55%)

Query: 2    SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
            +K+  AM E+  L  + D+  ++++AA  LI GL  EK+RWT      +   N+L+G  L
Sbjct: 3568 AKFDAAMKEKMDLLNDADMCRKKMQAASTLIDGLSGEKVRWTQQSKEFKTQINRLVGDVL 3627

Query: 62   LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
            L   FL Y   F   FR  ++   W+  +    IP   +  L   L D   I +W  +GL
Sbjct: 3628 LCTGFLSYLGPFNQIFRNYLLKDQWELELKARKIPFTENLNLIAMLVDPPTIGEWGLQGL 3687

Query: 122  PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNS 167
            P D+LSIQNGI+ T+   +PL IDPQTQ   WI+++E +N+L+  S
Sbjct: 3688 PGDDLSIQNGIIVTKATRYPLLIDPQTQGKTWIKSKEKENDLQVTS 3733

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Mus musculus (taxid: 10090)

>sp|Q96JB1|DYH8_HUMAN Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 91/166 (54%)

Query: 2    SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
            +K+  AM E+  L  + D   ++++AA  LI GL  EKIRWT      +   N+L+G  L
Sbjct: 3327 AKFDAAMNEKMDLLNDADTCRKKMQAASTLIDGLSGEKIRWTQQSKEFKAQINRLVGDIL 3386

Query: 62   LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
            L   FL Y   F   FR  ++   W+  +    IP   +  L   L D   I +W  +GL
Sbjct: 3387 LCTGFLSYLGPFNQIFRNYLLKDQWEMELRARKIPFTENLNLISMLVDPPTIGEWGLQGL 3446

Query: 122  PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNS 167
            P D+LSIQNGI+ T+   +PL IDPQTQ   WI+++E +N+L+  S
Sbjct: 3447 PGDDLSIQNGIIVTKATRYPLLIDPQTQGKTWIKSKEKENDLQVTS 3492

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 94/162 (58%)

Query: 3    KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLL 62
            +Y   + ++++L+++++ M  +LE A  L+SGL  EK RW   +  LE++   L+G CL+
Sbjct: 3283 QYDEKLAQKEELRKKSEEMELKLERAGMLVSGLAGEKARWEETVQGLEEDLGYLVGDCLI 3342

Query: 63   SGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLP 122
            + AFL Y   F   +R +++   W   I +L +P    F ++  L +   +  WN +GLP
Sbjct: 3343 AAAFLSYMGPFLTNYRDEIINQIWIRKIRELQVPCSPRFAIDNFLTNPTKVRDWNIQGLP 3402

Query: 123  PDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLK 164
             D  S +NGI+ TRG  + L IDPQ QALKWI+N E    LK
Sbjct: 3403 SDAFSTENGIIVTRGNRWALMIDPQGQALKWIKNMEGNQGLK 3444

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Mus musculus (taxid: 10090)

>sp|Q9MBF8|DYH1B_CHLRE Dynein-1-beta heavy chain, flagellar inner arm I1 complex OS=Chlamydomonas reinhardtii GN=DHC10 PE=1 SV=1

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 89/160 (55%)

Query: 3    KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLL 62
            KY  ++  +Q L+EE   +  +LE A+KL++GL  E++RW A ++        L G  ++
Sbjct: 3339 KYDTSIARKQALEEELADLEGKLERAEKLVTGLAGERVRWEASISEYNIALGCLPGDVVV 3398

Query: 63   SGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLP 122
            + AF+ Y   F  E+R ++V   W   +  L+IP    F     L +  M+  WN +GLP
Sbjct: 3399 AAAFMSYAGPFPSEYRDELVKHTWLPQVKALNIPASEHFDFALFLANPAMVRDWNIQGLP 3458

Query: 123  PDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNN 162
             D  S +NG++ TRG  +PL IDPQ QA KWI+N E +  
Sbjct: 3459 SDSFSTENGVMVTRGRRWPLMIDPQGQANKWIKNMEGRGG 3498

Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Required for assembly of the I1 inner arm complex and its targeting to the appropriate axoneme location. Also required for phototaxis.

Chlamydomonas reinhardtii (taxid: 3055)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
390366732	1853	PREDICTED: dynein heavy chain 10, axonem	0.824	0.096	0.595	3e-55
301611443	4429	PREDICTED: dynein heavy chain 10, axonem	0.824	0.040	0.584	5e-54
270010335	4796	hypothetical protein TcasGA2_TC009719 [T	0.746	0.033	0.611	1e-53
358340452	3830	dynein heavy chain 10 axonemal [Clonorch	0.824	0.046	0.573	2e-53
345791131	4678	PREDICTED: dynein heavy chain 10, axonem	0.824	0.038	0.595	2e-53
350592437	4496	PREDICTED: dynein heavy chain 10, axonem	0.824	0.039	0.584	2e-53
198435709	4611	PREDICTED: similar to hCG1811879 [Ciona	0.824	0.038	0.573	3e-53
357602800	3318	hypothetical protein KGM_07694 [Danaus p	0.751	0.049	0.613	1e-52
21754867	828	unnamed protein product [Homo sapiens]	0.824	0.216	0.584	2e-52
344297369	4676	PREDICTED: dynein heavy chain 10, axonem	0.824	0.038	0.584	2e-52

>gi|390366732|ref|XP_798341.3| PREDICTED: dynein heavy chain 10, axonemal-like, partial [Strongylocentrotus purpuratus]

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/183 (59%), Positives = 131/183 (71%), Gaps = 4/183 (2%)

Query: 3    KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLL 62
            KY  AM+E++ LQEE +IM RRL AADKLISGLG E +RWT DL  L Q R +L+G CL+
Sbjct: 829  KYENAMSEKKTLQEEAEIMERRLIAADKLISGLGSENVRWTKDLEDLRQRRIRLLGDCLV 888

Query: 63   SGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLP 122
            S AFL Y  AFTW+FR QMVY DWQ +I+   IPI   F++E  L DDV IS+W SEGLP
Sbjct: 889  SSAFLSYVGAFTWDFRDQMVYHDWQDDISDREIPISDPFKIENLLTDDVEISKWGSEGLP 948

Query: 123  PDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKW----NSEGLPPDELSIQ 178
            PDELSIQNGIL+TR   FPLCIDPQ QAL WI+ +E+ NNLK     + + L   EL+I+
Sbjct: 949  PDELSIQNGILTTRASRFPLCIDPQQQALNWIKKKEEPNNLKVCTFNDPDFLKQLELAIK 1008

Query: 179  NGI 181
             G 
Sbjct: 1009 YGF 1011

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|301611443|ref|XP_002935244.1| PREDICTED: dynein heavy chain 10, axonemal-like [Xenopus (Silurana) tropicalis]

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 107/183 (58%), Positives = 131/183 (71%), Gaps = 4/183 (2%)

Query: 3    KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLL 62
            KY  A+TE+QKLQEE ++M RRL AADKLISGLG E  RWT DL  L+  R +L+G CLL
Sbjct: 3253 KYEAAITEKQKLQEEAEVMERRLIAADKLISGLGSENKRWTNDLEELKVRRVKLLGDCLL 3312

Query: 63   SGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLP 122
              AFL Y  AF W+FR++MVY +WQ +I    IP+   FR+E  L DDV IS+W SEGLP
Sbjct: 3313 CSAFLSYEGAFNWDFRKEMVYTEWQQDILAREIPLSQPFRIESLLTDDVEISRWGSEGLP 3372

Query: 123  PDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNS----EGLPPDELSIQ 178
            PDELSIQNGIL+TR   FPLCIDPQ QAL WI+ +E+KNNLK +S    + L   E++I+
Sbjct: 3373 PDELSIQNGILTTRASRFPLCIDPQQQALNWIKRKEEKNNLKISSFNDPDFLKQLEMAIK 3432

Query: 179  NGI 181
             G 
Sbjct: 3433 YGF 3435

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|270010335|gb|EFA06783.1| hypothetical protein TcasGA2_TC009719 [Tribolium castaneum]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/162 (61%), Positives = 121/162 (74%)

Query: 3    KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLL 62
            KY  AM  RQ+LQEETDIMMRRL AADKLI+GL  E+ RWT DL  L   + +L+G CLL
Sbjct: 3619 KYEAAMKRRQELQEETDIMMRRLIAADKLITGLSSERERWTKDLEMLHLEKERLVGNCLL 3678

Query: 63   SGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLP 122
            S AFL Y   FT+EFR++M+Y DWQ +I    IP+   +R+E  L +DV +S WNSEGLP
Sbjct: 3679 SSAFLSYAGPFTYEFRKEMIYDDWQGDIINRGIPLTQPYRIEANLSNDVEVSLWNSEGLP 3738

Query: 123  PDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLK 164
            PDELS+QNGIL+ +G  FPLCIDPQ QAL WI+ +E+KNNLK
Sbjct: 3739 PDELSVQNGILTLKGTRFPLCIDPQQQALNWIKRKEEKNNLK 3780

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|358340452|dbj|GAA48340.1| dynein heavy chain 10 axonemal [Clonorchis sinensis]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 131/183 (71%), Gaps = 4/183 (2%)

Query: 3    KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLL 62
            +Y  AMTERQ++Q ETD+M RRL AADKL+SGLG E+IRW  D   L + R +L+G CLL
Sbjct: 3069 RYEDAMTERQQIQAETDLMERRLRAADKLMSGLGSEQIRWDQDRKELLEKRTRLLGDCLL 3128

Query: 63   SGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLP 122
            S AFL Y  AF+WEFR +M+Y DWQS + + +IP+   FRLE  L +DV +S+WNSEGLP
Sbjct: 3129 SAAFLSYAGAFSWEFRTRMIYKDWQSALLERAIPLSQPFRLEDVLTNDVEVSKWNSEGLP 3188

Query: 123  PDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNS----EGLPPDELSIQ 178
            PDELS+QNGIL+     FPLCIDPQ QAL WI N+E  NNLK  +    + L   ELS++
Sbjct: 3189 PDELSVQNGILTVGSSRFPLCIDPQEQALHWILNKEQPNNLKVATFNDPDFLKQLELSVR 3248

Query: 179  NGI 181
             GI
Sbjct: 3249 YGI 3251

Source: Clonorchis sinensis

Species: Clonorchis sinensis

Genus: Clonorchis

Family: Opisthorchiidae

Order: Opisthorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|345791131|ref|XP_543369.3| PREDICTED: dynein heavy chain 10, axonemal [Canis lupus familiaris]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/183 (59%), Positives = 130/183 (71%), Gaps = 4/183 (2%)

Query: 2    SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
            +KY  A+ E+QKLQEE DIM RRL AADKLISGLG E IRW +DL  L   R +L+G CL
Sbjct: 3501 AKYEAAILEKQKLQEEADIMERRLIAADKLISGLGSENIRWLSDLEELMHRRVKLLGDCL 3560

Query: 62   LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
            L  AFL Y  AFTWEFR QMV   WQ++I +  IP+   FRLE  L DDV IS+W S+GL
Sbjct: 3561 LCSAFLSYEGAFTWEFRDQMVKQVWQNDILEREIPLSQPFRLENLLTDDVEISRWGSQGL 3620

Query: 122  PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNS----EGLPPDELSI 177
            PPDELS+QNGIL+TR   FPLCIDPQ QAL WI+ +E+KNNL+  S    + L   E+SI
Sbjct: 3621 PPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEEKNNLRVASFNDPDFLKQLEMSI 3680

Query: 178  QNG 180
            + G
Sbjct: 3681 KYG 3683

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350592437|ref|XP_003483464.1| PREDICTED: dynein heavy chain 10, axonemal [Sus scrofa]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/183 (58%), Positives = 131/183 (71%), Gaps = 4/183 (2%)

Query: 2    SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
            +KY  A+ E+QKLQEE +IM RRL AADKLISGLG E +RW  DL  L   R +L+G CL
Sbjct: 3319 AKYEAAILEKQKLQEEAEIMERRLIAADKLISGLGSENVRWLNDLDELMHRRVKLLGDCL 3378

Query: 62   LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
            L  AFL Y  AFTWEFR +MV+  WQS+I + +IP+   FRLE  L DDV IS+W S+GL
Sbjct: 3379 LCAAFLSYEGAFTWEFRDEMVHQVWQSDILERAIPLSQPFRLESLLTDDVEISRWGSQGL 3438

Query: 122  PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNS----EGLPPDELSI 177
            PPDELS+QNGIL+TR   FPLCIDPQ QAL WI+ +E+KNNL+  S    + L   E+SI
Sbjct: 3439 PPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEEKNNLRMASFNDPDFLKQLEMSI 3498

Query: 178  QNG 180
            + G
Sbjct: 3499 KYG 3501

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|198435709|ref|XP_002125770.1| PREDICTED: similar to hCG1811879 [Ciona intestinalis]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 131/183 (71%), Gaps = 4/183 (2%)

Query: 3    KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLL 62
            KY  A+ E+++LQEE +IM RRL AADKLISGLG E +RW  +L  L++ R +L+G CL+
Sbjct: 3434 KYEQAIAEQRQLQEEAEIMERRLRAADKLISGLGSENVRWNIELEELKKRRIRLLGDCLI 3493

Query: 63   SGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLP 122
            S AFL Y  AF+WEFR  MVY DW  ++T+  IP+   F+LE  L D+V IS+W SEGLP
Sbjct: 3494 SSAFLSYEGAFSWEFRNSMVYEDWVKDVTQRKIPLSDPFKLESLLTDEVEISKWGSEGLP 3553

Query: 123  PDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPD----ELSIQ 178
            PDELSIQNGIL+TR   FPLCIDPQ QAL WIR +E+KNNLK +S   P      EL+I+
Sbjct: 3554 PDELSIQNGILTTRASRFPLCIDPQEQALSWIRKKEEKNNLKESSFNSPDFLKQLELAIK 3613

Query: 179  NGI 181
             G 
Sbjct: 3614 YGF 3616

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357602800|gb|EHJ63513.1| hypothetical protein KGM_07694 [Danaus plexippus]

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 100/163 (61%), Positives = 124/163 (76%)

Query: 2    SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
            ++Y  AM  RQ+LQEETDIMMRRL AADKL+SGL  E+ RWT DLA L   +++LIG CL
Sbjct: 2142 NRYETAMLRRQELQEETDIMMRRLVAADKLMSGLSSEQKRWTEDLAALYVEQSRLIGNCL 2201

Query: 62   LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
            LS +FL YT  F++ FRQ M+Y DW  ++ +  IP+ + F +EK L ++V IS WNSEGL
Sbjct: 2202 LSASFLSYTGPFSFSFRQTMLYEDWMGDVLERGIPLTTPFTVEKNLTNEVEISGWNSEGL 2261

Query: 122  PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLK 164
            PPDELS+QNGIL+TR   FPLCIDPQTQAL WI+ +E KNNLK
Sbjct: 2262 PPDELSVQNGILTTRASRFPLCIDPQTQALTWIKRKEAKNNLK 2304

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21754867|dbj|BAC04579.1| unnamed protein product [Homo sapiens]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/183 (58%), Positives = 129/183 (70%), Gaps = 4/183 (2%)

Query: 2   SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
           +KY  A+ E+QKLQEE +IM RRL AADKLISGLG E IRW  DL  L   R +L+G CL
Sbjct: 362 AKYEAAILEKQKLQEEAEIMERRLIAADKLISGLGSENIRWLNDLDELMHRRVKLLGDCL 421

Query: 62  LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
           L  AFL Y  AFTWEFR +MV   WQ++I +  IP+   FRLE  L DDV IS+W S+GL
Sbjct: 422 LCAAFLSYEGAFTWEFRDEMVNRIWQNDILEREIPLSQPFRLESLLTDDVEISRWGSQGL 481

Query: 122 PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNS----EGLPPDELSI 177
           PPDELS+QNGIL+TR   FPLCIDPQ QAL WI+ +E+KNNL+  S    + L   E+SI
Sbjct: 482 PPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEEKNNLRVASFNDPDFLKQLEMSI 541

Query: 178 QNG 180
           + G
Sbjct: 542 KYG 544

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344297369|ref|XP_003420371.1| PREDICTED: dynein heavy chain 10, axonemal [Loxodonta africana]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/183 (58%), Positives = 129/183 (70%), Gaps = 4/183 (2%)

Query: 2    SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
            +KY  A+ E+QKLQEE +IM RRL AADKLISGLG E +RW  DL  L   R +L+G CL
Sbjct: 3499 AKYEAAILEKQKLQEEAEIMERRLIAADKLISGLGSENVRWLNDLDELMHRRVKLLGDCL 3558

Query: 62   LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
            L  AFL Y  AFTWEFR QMV   WQ++I +  IP+   FRLE  L DDV IS+W S+GL
Sbjct: 3559 LCAAFLSYEGAFTWEFRDQMVNQVWQNDILERGIPLSQPFRLENLLTDDVEISRWGSQGL 3618

Query: 122  PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNS----EGLPPDELSI 177
            PPDELS+QNGIL+TR   FPLCIDPQ QAL WI+ +E+KNNL+  S    + L   E+SI
Sbjct: 3619 PPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEEKNNLRVASFNDPDFLKQLEMSI 3678

Query: 178  QNG 180
            + G
Sbjct: 3679 KYG 3681

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
UNIPROTKB|J9JHE6	4028	DNAH10 "Uncharacterized protei	0.820	0.044	0.597	1.5e-49
UNIPROTKB|F1PMG2	4291	DNAH10 "Uncharacterized protei	0.820	0.041	0.597	1.6e-49
UNIPROTKB|E2RMJ8	4436	DNAH10 "Uncharacterized protei	0.820	0.040	0.597	1.7e-49
UNIPROTKB|F1RFM8	4479	DNAH10 "Uncharacterized protei	0.820	0.039	0.586	2.7e-49
ZFIN|ZDB-GENE-060531-163	3330	si:dkeyp-86b9.1 "si:dkeyp-86b9	0.815	0.053	0.568	5.1e-49
UNIPROTKB|F1MSP8	4470	Bt.11479 "Uncharacterized prot	0.820	0.039	0.581	3.2e-48
UNIPROTKB|Q8IVF4	4471	DNAH10 "Dynein heavy chain 10,	0.820	0.039	0.586	3.2e-48
UNIPROTKB|F1NQP3	4033	F1NQP3 "Uncharacterized protei	0.751	0.040	0.558	2.4e-44
FB|FBgn0013813	5080	Dhc98D "Dynein heavy chain at	0.741	0.031	0.565	8.5e-42
UNIPROTKB|F1LR86	3322	Dnah10 "Protein Dnah10" [Rattu	0.824	0.053	0.473	3.1e-37

UNIPROTKB|J9JHE6 DNAH10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 535 (193.4 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 110/184 (59%), Positives = 130/184 (70%)

Query:     2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
             +KY  A+ E+QKLQEE DIM RRL AADKLISGLG E IRW +DL  L   R +L+G CL
Sbjct:  2851 AKYEAAILEKQKLQEEADIMERRLIAADKLISGLGSENIRWLSDLEELMHRRVKLLGDCL 2910

Query:    62 LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
             L  AFL Y  AFTWEFR QMV   WQ++I +  IP+   FRLE  L DDV IS+W S+GL
Sbjct:  2911 LCSAFLSYEGAFTWEFRDQMVKQVWQNDILEREIPLSQPFRLENLLTDDVEISRWGSQGL 2970

Query:   122 PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPD-----ELS 176
             PPDELS+QNGIL+TR   FPLCIDPQ QAL WI+ +E+KNNL+  S    PD     E+S
Sbjct:  2971 PPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEEKNNLRVASFN-DPDFLKQLEMS 3029

Query:   177 IQNG 180
             I+ G
Sbjct:  3030 IKYG 3033

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1PMG2 DNAH10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 535 (193.4 bits), Expect = 1.6e-49, P = 1.6e-49
 Identities = 110/184 (59%), Positives = 130/184 (70%)

Query:     2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
             +KY  A+ E+QKLQEE DIM RRL AADKLISGLG E IRW +DL  L   R +L+G CL
Sbjct:  3114 AKYEAAILEKQKLQEEADIMERRLIAADKLISGLGSENIRWLSDLEELMHRRVKLLGDCL 3173

Query:    62 LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
             L  AFL Y  AFTWEFR QMV   WQ++I +  IP+   FRLE  L DDV IS+W S+GL
Sbjct:  3174 LCSAFLSYEGAFTWEFRDQMVKQVWQNDILEREIPLSQPFRLENLLTDDVEISRWGSQGL 3233

Query:   122 PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPD-----ELS 176
             PPDELS+QNGIL+TR   FPLCIDPQ QAL WI+ +E+KNNL+  S    PD     E+S
Sbjct:  3234 PPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEEKNNLRVASFN-DPDFLKQLEMS 3292

Query:   177 IQNG 180
             I+ G
Sbjct:  3293 IKYG 3296

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|E2RMJ8 DNAH10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 535 (193.4 bits), Expect = 1.7e-49, P = 1.7e-49
 Identities = 110/184 (59%), Positives = 130/184 (70%)

Query:     2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
             +KY  A+ E+QKLQEE DIM RRL AADKLISGLG E IRW +DL  L   R +L+G CL
Sbjct:  3259 AKYEAAILEKQKLQEEADIMERRLIAADKLISGLGSENIRWLSDLEELMHRRVKLLGDCL 3318

Query:    62 LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
             L  AFL Y  AFTWEFR QMV   WQ++I +  IP+   FRLE  L DDV IS+W S+GL
Sbjct:  3319 LCSAFLSYEGAFTWEFRDQMVKQVWQNDILEREIPLSQPFRLENLLTDDVEISRWGSQGL 3378

Query:   122 PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPD-----ELS 176
             PPDELS+QNGIL+TR   FPLCIDPQ QAL WI+ +E+KNNL+  S    PD     E+S
Sbjct:  3379 PPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEEKNNLRVASFN-DPDFLKQLEMS 3437

Query:   177 IQNG 180
             I+ G
Sbjct:  3438 IKYG 3441

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1RFM8 DNAH10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 533 (192.7 bits), Expect = 2.7e-49, P = 2.7e-49
 Identities = 108/184 (58%), Positives = 131/184 (71%)

Query:     2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
             +KY  A+ E+QKLQEE +IM RRL AADKLISGLG E +RW  DL  L   R +L+G CL
Sbjct:  3302 AKYEAAILEKQKLQEEAEIMERRLIAADKLISGLGSENVRWLNDLDELMHRRVKLLGDCL 3361

Query:    62 LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
             L  AFL Y  AFTWEFR +MV+  WQS+I + +IP+   FRLE  L DDV IS+W S+GL
Sbjct:  3362 LCAAFLSYEGAFTWEFRDEMVHQVWQSDILERAIPLSQPFRLESLLTDDVEISRWGSQGL 3421

Query:   122 PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPD-----ELS 176
             PPDELS+QNGIL+TR   FPLCIDPQ QAL WI+ +E+KNNL+  S    PD     E+S
Sbjct:  3422 PPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEEKNNLRMASFN-DPDFLKQLEMS 3480

Query:   177 IQNG 180
             I+ G
Sbjct:  3481 IKYG 3484

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

ZFIN|ZDB-GENE-060531-163 si:dkeyp-86b9.1 "si:dkeyp-86b9.1" [Danio rerio (taxid:7955)]

 Score = 529 (191.3 bits), Expect = 5.1e-49, P = 5.1e-49
 Identities = 104/183 (56%), Positives = 131/183 (71%)

Query:     3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLL 62
             KY GAMTE+Q LQEE ++M RRL AADKLISGL  E  RW  DL  L+Q R +L+G CL+
Sbjct:  2154 KYEGAMTEKQLLQEEAEVMERRLVAADKLISGLASENKRWIKDLEELKQRRVRLLGDCLI 2213

Query:    63 SGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLP 122
               AFL Y  AF+W+FR +MVY  WQ+++ +  IP+   FR+E  L D+V IS+W SEGLP
Sbjct:  2214 CAAFLSYEGAFSWDFRNEMVYKVWQADVLERGIPLSQPFRIENLLTDEVEISRWGSEGLP 2273

Query:   123 PDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPD-----ELSI 177
             PDELS+QNGIL+TR   FPLCIDPQ QAL W++ +E+KNNLK +S    PD     EL+I
Sbjct:  2274 PDELSVQNGILTTRSSRFPLCIDPQQQALNWVKKKEEKNNLKISSFN-DPDFLKGLELAI 2332

Query:   178 QNG 180
             + G
Sbjct:  2333 KYG 2335

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

UNIPROTKB|F1MSP8 Bt.11479 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 523 (189.2 bits), Expect = 3.2e-48, P = 3.2e-48
 Identities = 107/184 (58%), Positives = 129/184 (70%)

Query:     2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
             +KY  A+ E+QKLQEE +IM RRL AADKLISGLG E +RW  DL  L   R +L+G CL
Sbjct:  3293 AKYEAAILEKQKLQEEAEIMERRLIAADKLISGLGSENVRWLNDLDELMHRRVKLLGDCL 3352

Query:    62 LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
             L  AFL Y  AFTWEFR +MV   WQ++I +  IP+   FRLE  L DDV IS+W S+GL
Sbjct:  3353 LCAAFLSYEGAFTWEFRDEMVNQVWQNDILERGIPLSQPFRLENLLTDDVEISRWGSQGL 3412

Query:   122 PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPD-----ELS 176
             PPDELS+QNGIL+TR   FPLCIDPQ QAL WI+ +E+KNNL+  S    PD     E+S
Sbjct:  3413 PPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEEKNNLRVASFN-DPDFLKQLEMS 3471

Query:   177 IQNG 180
             I+ G
Sbjct:  3472 IKYG 3475

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|Q8IVF4 DNAH10 "Dynein heavy chain 10, axonemal" [Homo sapiens (taxid:9606)]

 Score = 523 (189.2 bits), Expect = 3.2e-48, P = 3.2e-48
 Identities = 108/184 (58%), Positives = 129/184 (70%)

Query:     2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
             +KY  A+ E+QKLQEE +IM RRL AADKLISGLG E IRW  DL  L   R +L+G CL
Sbjct:  3294 AKYEAAILEKQKLQEEAEIMERRLIAADKLISGLGSENIRWLNDLDELMHRRVKLLGDCL 3353

Query:    62 LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
             L  AFL Y  AFTWEFR +MV   WQ++I +  IP+   FRLE  L DDV IS+W S+GL
Sbjct:  3354 LCAAFLSYEGAFTWEFRDEMVNRIWQNDILEREIPLSQPFRLESLLTDDVEISRWGSQGL 3413

Query:   122 PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPD-----ELS 176
             PPDELS+QNGIL+TR   FPLCIDPQ QAL WI+ +E+KNNL+  S    PD     E+S
Sbjct:  3414 PPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEEKNNLRVASFN-DPDFLKQLEMS 3472

Query:   177 IQNG 180
             I+ G
Sbjct:  3473 IKYG 3476

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

UNIPROTKB|F1NQP3 F1NQP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 486 (176.1 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 91/163 (55%), Positives = 117/163 (71%)

Query:     2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
             +KY  A+ E+Q+LQEE +IM RRLEAADKLI GL  E  RW  +L  L+  + +L+G CL
Sbjct:  3137 NKYQEAIKEKQQLQEEAEIMQRRLEAADKLIFGLRSENKRWAKELEELKMRKVKLLGDCL 3196

Query:    62 LSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGL 121
             L  AFL Y  AF+WEFR +M+Y  WQ +I    IP+   FRLE  L ++V +S+W S+GL
Sbjct:  3197 LCAAFLSYEGAFSWEFRNEMIYQVWQEDILSREIPLSQPFRLESLLTNEVEVSRWVSQGL 3256

Query:   122 PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLK 164
             PPDELS+QNGIL+T    FPLCIDPQ QAL WI+ +E+KNNL+
Sbjct:  3257 PPDELSVQNGILTTYASRFPLCIDPQQQALNWIKKKEEKNNLR 3299

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

FB|FBgn0013813 Dhc98D "Dynein heavy chain at 89D" [Drosophila melanogaster (taxid:7227)]

 Score = 463 (168.0 bits), Expect = 8.5e-42, P = 8.5e-42
 Identities = 91/161 (56%), Positives = 112/161 (69%)

Query:     4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLS 63
             Y  +M + + L E      RRL A+DKLISGL  E IRW+ ++A+L Q     +G CL+S
Sbjct:  3906 YATSMKQMRALTEMMQQAERRLIASDKLISGLTSELIRWSKEMASLGQQLIDSVGGCLIS 3965

Query:    64 GAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPP 123
              +FL YT AFTWEFR+ MV+ DW  +I  L IPI   F+++  L  DV ISQW++EGLPP
Sbjct:  3966 ASFLAYTGAFTWEFRKAMVFDDWLEDIASLGIPIQLPFKIDGYLTTDVEISQWSNEGLPP 4025

Query:   124 DELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLK 164
             DELSIQNGIL+ R   FPLCIDPQ QAL+WIR RE KNNLK
Sbjct:  4026 DELSIQNGILTMRASRFPLCIDPQLQALQWIRKREFKNNLK 4066

GO:0005875 "microtubule associated complex" evidence=ISS;NAS

GO:0003774 "motor activity" evidence=ISS

GO:0005858 "axonemal dynein complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=IEA;ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1LR86 Dnah10 "Protein Dnah10" [Rattus norvegicus (taxid:10116)]

 Score = 418 (152.2 bits), Expect = 3.1e-37, P = 3.1e-37
 Identities = 88/186 (47%), Positives = 118/186 (63%)

Query:     1 MSKYVGAMTERQKLQEETDIM-MRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59
             +SK    + + +  Q+ + +M  R  + + ++  GLG E +RW  DL  L   R +L+G 
Sbjct:  2141 VSKREDELLQLRVAQKRSHLMHWRGGDRSGQIHFGLGSENVRWLNDLDELMHRRVKLLGD 2200

Query:    60 CLLSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSE 119
             CLL  AFL Y  AFTWEFR  MV  +W+++I    IP+   FRLE  L DDV IS+W S+
Sbjct:  2201 CLLCAAFLSYEGAFTWEFRDAMVNQEWRNDILDRDIPLSQPFRLENLLTDDVEISRWGSQ 2260

Query:   120 GLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPD-----E 174
             GLPPDELS+QNGIL+TR   FPLCIDPQ QAL WI+ +E++NNL+  S    PD     E
Sbjct:  2261 GLPPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEERNNLRVASFN-DPDFLKQLE 2319

Query:   175 LSIQNG 180
             +SI+ G
Sbjct:  2320 MSIKYG 2325

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8IVF4	DYH10_HUMAN	No assigned EC number	0.5846	0.8248	0.0400	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	217
pfam12781	228	pfam12781, AAA_9, ATP-binding dynein motor region	2e-09
pfam12777	344	pfam12777, MT, Microtubule-binding stalk of dynein	1e-08
pfam12781	228	pfam12781, AAA_9, ATP-binding dynein motor region	1e-07

>gnl|CDD|193257 pfam12781, AAA_9, ATP-binding dynein motor region D5

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query: 107 LCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNR 157
           L DD  ++ WN+EGLP D +S +N  +      +PL +DPQ Q +KWI+N+
Sbjct: 2   LTDDADVATWNNEGLPSDRMSTENATILGNCERWPLMVDPQLQGIKWIKNK 52

The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D5 ATP-binding region of the motor, but has lost its P-loop. Length = 228

>gnl|CDD|193253 pfam12777, MT, Microtubule-binding stalk of dynein motor

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 23/85 (27%), Positives = 42/85 (49%)

Query: 2   SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61
           + +  A  ++ K Q+E +   R +  A++L+ GL  E +RW   +   +     L G  L
Sbjct: 256 AAFEKATADKLKCQQEAEATNRTILLANRLVGGLASENVRWAEAVENFKSQEVTLCGDVL 315

Query: 62  LSGAFLCYTSAFTWEFRQQMVYVDW 86
           L  AF+ Y   FT ++R +++   W
Sbjct: 316 LITAFVSYVGYFTKKYRNELMERFW 340

the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This family is the region between D4 and D5 and is the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component. Length = 344

>gnl|CDD|193257 pfam12781, AAA_9, ATP-binding dynein motor region D5

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 158 EDKNNLKWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNR 206
           +D +   WN+EGLP D +S +N  +      +PL +DPQ Q +KWI+N+
Sbjct: 4   DDADVATWNNEGLPSDRMSTENATILGNCERWPLMVDPQLQGIKWIKNK 52

The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D5 ATP-binding region of the motor, but has lost its P-loop. Length = 228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
KOG3595|consensus	1395		99.89
PF12781	228	AAA_9: ATP-binding dynein motor region D5; PDB: 3V	99.84
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	99.72
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	99.22
PF12781	228	AAA_9: ATP-binding dynein motor region D5; PDB: 3V	98.91
KOG3595|consensus	1395		98.78
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	95.92
PF15188	85	CCDC-167: Coiled-coil domain-containing protein 16	89.51
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	88.8
COG4026	290	Uncharacterized protein containing TOPRIM domain,	84.76
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	82.96
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	81.76
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	81.16
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	80.29
COG4026	290	Uncharacterized protein containing TOPRIM domain,	80.22
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	80.1

>KOG3595|consensus

Probab=99.89  E-value=6.6e-23  Score=201.29  Aligned_cols=193  Identities=37%  Similarity=0.576  Sum_probs=180.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy12734          2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQM   81 (217)
Q Consensus         2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l   81 (217)
                      .+|+....++..++.++..+..++.+|.+++.+|++|..||.+..+.+......++||++++++++.|+|+++..+|..+
T Consensus       969 ~~~~~~~~~~~~~~~~~~~~~~k~~~a~~Li~~Ls~e~~rW~~~~~~~~~~~~~l~gd~ll~~~~~~y~g~~~~~~r~~~ 1048 (1395)
T KOG3595|consen  969 DEYEQLIAEKQELEEDMDACELKLLRAEELIQGLSGEKERWSETSEQFSKQYSRLVGDVLLSSAFVAYLGAFDQLYRQSL 1048 (1395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhhHHHHhhhhhhhhccccCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHhhhhcccccCCCCCcccccCCHHHHHHHHHcCCCCCchhhhhhHHhhcCCCcceeecchhhHHHHHHhccccC
Q psy12734         82 VYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKN  161 (217)
Q Consensus        82 ~~~~w~~~~~~~~i~~~~~~~~~~~L~~~~~~~~W~~~glp~d~~~~en~ii~~~~~r~PlliDP~~~~~~wl~~~~~~~  161 (217)
                      +. .|...+....+ +..++++..+++++.....|...|+|.|+++++|++++.++.+||+++||++++..||++.++.+
T Consensus      1049 ~~-~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~w~~~~lp~~~~s~en~~i~~~~~~~~l~id~q~q~~~~i~~~~~~~ 1126 (1395)
T KOG3595|consen 1049 LR-LWESLCTQLKI-VLSNFSLISMLVDPTEILNWNIRGLPADDLSIENGIIITNSNRWPLIIDPQGQANEWIKNKESEN 1126 (1395)
T ss_pred             HH-HhHHhcCcccc-cccccchHhhcCchHhhcchhhccCcccccchhHHHHHhccCCCceeecchhhhhHhHhhhhhhc
Confidence            88 89998888888 88899999999999999999999999999999999999999999999999999999999999989


Q ss_pred             ccccccC----CCcchHHHhhhcccccccccCCcccCchh
Q psy12734        162 NLKWNSE----GLPPDELSIQNGILSTRGCHFPLCIDPQT  197 (217)
Q Consensus       162 ~l~v~~~----~l~~le~ai~~G~iv~~~~~~p~~idp~~  197 (217)
                      ++.++++    ++..++.|+++|.+++. ++.-+.+||..
T Consensus      1127 ~~~~i~~~~~~~l~~le~a~~~g~~il~-~~~~e~~d~~l 1165 (1395)
T KOG3595|consen 1127 KLQVISFNEKEFLRQLENALRFGEPVLI-EDVNEELDPAL 1165 (1395)
T ss_pred             ccceeeccchhHHHHHHhHhccCCceec-cchhhhhchhh
Confidence            9999997    89999999999998875 55555566643

>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=99.84  E-value=8.5e-22  Score=159.59  Aligned_cols=91  Identities=43%  Similarity=0.562  Sum_probs=67.7

Q ss_pred             ccCCHHHHHHHHHcCCCCCchhhhhhHHhhcCCCcceeecchhhHHHHHHhccccCccccccC----CCcchHHHhhhcc
Q psy12734        106 ELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSE----GLPPDELSIQNGI  181 (217)
Q Consensus       106 ~L~~~~~~~~W~~~glp~d~~~~en~ii~~~~~r~PlliDP~~~~~~wl~~~~~~~~l~v~~~----~l~~le~ai~~G~  181 (217)
                      +|+++.++..|..+|||.|++|+|||+++.++.||||+|||+++|.+||+++++ +++.++++    |++++|.|+++|.
T Consensus         1 ~L~d~~~i~~W~~~GLP~D~~siENa~i~~~~~r~PLiIDPq~qa~~wi~~~~~-~~l~v~~~~~~~~~~~le~air~G~   79 (228)
T PF12781_consen    1 MLSDDVEIRQWISQGLPSDQLSIENAIILKNSRRWPLIIDPQGQANKWIKNMYK-NDLEVTSFSDSNFLKQLENAIRFGK   79 (228)
T ss_dssp             ---------HHHHCT--SSHHHHHHHHHCCC-SSEEEEESTTTCHHHHHHHHCC-CCEEEEETTSTCHHHHHHHHHHCT-
T ss_pred             CCccccchhhHHhcCCCCCchHHhhHHHHhhcCCCceEECCchHHHHHHHHhhh-hcccccccchHhHHHHHHHHHHcCC
Confidence            478899999999999999999999999999999999999999999999999875 45889987    8899999999999


Q ss_pred             cccc---cccCCcccCchh
Q psy12734        182 LSTR---GCHFPLCIDPQT  197 (217)
Q Consensus       182 iv~~---~~~~p~~idp~~  197 (217)
                      +++.   .+.++++++|-.
T Consensus        80 ~llIe~v~e~~dp~l~plL   98 (228)
T PF12781_consen   80 PLLIENVGESLDPILDPLL   98 (228)
T ss_dssp             EEEEC-GCSCHHCTCHHHH
T ss_pred             eeeecccccccChhhhhhh
Confidence            8764   234556666654

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=99.72  E-value=1.6e-17  Score=142.65  Aligned_cols=89  Identities=40%  Similarity=0.705  Sum_probs=81.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy12734          2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQM   81 (217)
Q Consensus         2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l   81 (217)
                      .+|++.+.+++.|+.+++.++.+|++|.+|+.+|++|..||.+++..++.+...++||++++|||++|+|||+++||..+
T Consensus       256 ~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~~~R~~l  335 (344)
T PF12777_consen  256 KEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAAFISYLGPFTPEYRQEL  335 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHhh
Q psy12734         82 VYVDWQSNI   90 (217)
Q Consensus        82 ~~~~w~~~~   90 (217)
                      ++..|..++
T Consensus       336 ~~~~W~~~l  344 (344)
T PF12777_consen  336 LKKMWKPYL  344 (344)
T ss_dssp             HHHH-----
T ss_pred             HHHhccccC
Confidence            876798753

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=99.22  E-value=2.1e-12  Score=123.47  Aligned_cols=190  Identities=11%  Similarity=-0.010  Sum_probs=156.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy12734          2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQM   81 (217)
Q Consensus         2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l   81 (217)
                      .+|+-...+++-.+.++...+.++.+.-.+++.|.-|..+|....+++.+....|+||+..++++.+|+|.+++.-|..+
T Consensus      2346 ~~YSl~I~~Vh~~~~~md~v~~~~~rsi~v~~~l~~e~~ew~g~~~~~pk~m~eL~g~~~~sS~~~~y~g~l~~~~Ra~~ 2425 (3164)
T COG5245        2346 SYYSLDILRVHGKIADMDTVHKDVLRSIFVSEILINEDSEWGGVFSEVPKLMVELDGDGHPSSCLHPYIGTLGFLCRAIE 2425 (3164)
T ss_pred             HHHHHHHHHHHhHhhhhhhHHHhhhhceeeeeecceecccccchHhhccHHHHHhhcCCcchheeeeeeccccHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHhhHHHhh-hhcccccCCCCCcccccCCHHHHHHHHHcCCCCCchhhhhhHHhhcC-CCcceeecchhhHHHHHHhccc
Q psy12734         82 VYVDWQSNI-TKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRG-CHFPLCIDPQTQALKWIRNRED  159 (217)
Q Consensus        82 ~~~~w~~~~-~~~~i~~~~~~~~~~~L~~~~~~~~W~~~glp~d~~~~en~ii~~~~-~r~PlliDP~~~~~~wl~~~~~  159 (217)
                      .. ...-.+ +++.+.......+++.++....-.+|...   ..|+.+||.-+.+.. .-.|+++||..++..-+.++++
T Consensus      2426 ~~-~~~~~Is~~F~~k~~~~r~fI~~~Vq~~e~~K~~~c---~tDy~lEN~~i~~~~qd~~~~L~dpss~ivt~~~~~y~ 2501 (3164)
T COG5245        2426 FG-MSFIRISKEFRDKEIRRRQFITEGVQKIEDFKEEAC---STDYGLENSRIRKDLQDLTAVLNDPSSKIVTSQRQMYD 2501 (3164)
T ss_pred             Hh-hhHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHh---cchhcchhhHHHhhccccHhHhcCcHHHHHHhhHHHhc
Confidence            64 233333 24444444455555556555555567554   568899998776654 5568999999999999999999


Q ss_pred             cCccccccC----CCcchHHHhhhcc--cccccccCCcccCc
Q psy12734        160 KNNLKWNSE----GLPPDELSIQNGI--LSTRGCHFPLCIDP  195 (217)
Q Consensus       160 ~~~l~v~~~----~l~~le~ai~~G~--iv~~~~~~p~~idp  195 (217)
                      ++.....++    |...+++|+++|.  ++.+++-|++.|.|
T Consensus      2502 ~kkail~sf~e~~f~~~L~~a~r~gs~~iI~daE~~d~~i~r 2543 (3164)
T COG5245        2502 EKKAILGSFREMEFAFGLSQARREGSDKIIGDAEALDEEIGR 2543 (3164)
T ss_pred             cchhhhhhhhhHHHHHHHHHHHHhccceEecchhhhhhhhhh
Confidence            887888887    8899999999999  44567778877776

>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=98.91  E-value=3.1e-10  Score=92.16  Aligned_cols=47  Identities=47%  Similarity=0.774  Sum_probs=40.0

Q ss_pred             CCcchHHHhhhcccccccccCCcccCchhhHHHHHHhhcccCCCccCC
Q psy12734        169 GLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNPKVNQ  216 (217)
Q Consensus       169 ~l~~le~ai~~G~iv~~~~~~p~~idp~~~~~~~~~~~~~~~~l~~~~  216 (217)
                      |||.|..|++||.++..+.+||++|||+++|.+||++++++ ++.|+.
T Consensus        15 GLP~D~~siENa~i~~~~~r~PLiIDPq~qa~~wi~~~~~~-~l~v~~   61 (228)
T PF12781_consen   15 GLPSDQLSIENAIILKNSRRWPLIIDPQGQANKWIKNMYKN-DLEVTS   61 (228)
T ss_dssp             T--SSHHHHHHHHHCCC-SSEEEEESTTTCHHHHHHHHCCC-CEEEEE
T ss_pred             CCCCCchHHhhHHHHhhcCCCceEECCchHHHHHHHHhhhh-cccccc
Confidence            99999999999999999999999999999999999999764 477654

>KOG3595|consensus

Probab=98.78  E-value=3.9e-08  Score=97.93  Aligned_cols=185  Identities=26%  Similarity=0.407  Sum_probs=125.5

Q ss_pred             hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCH
Q psy12734          3 KYVGAMTERQKLQE-------ETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTW   75 (217)
Q Consensus         3 ~y~~~~~e~~~l~~-------~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~   75 (217)
                      .|.+....+++++.       +.+.+...++.....+..+.....+-+..++....+...+-.++..+...+..++.+..
T Consensus       921 ~~~kv~~~v~p~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~a~~Li~ 1000 (1395)
T KOG3595|consen  921 KYSKVLKVVEPKRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDMDACELKLLRAEELIQ 1000 (1395)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555544       55555556666666666666777777777777777778888889999999999999999


Q ss_pred             HHHHHHHHhhHHHhhhhcccccCCCCCcccccCCHHHHH--------------------HHHHcCCCCCchhhhhhHHhh
Q psy12734         76 EFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMIS--------------------QWNSEGLPPDELSIQNGILST  135 (217)
Q Consensus        76 ~~r~~l~~~~w~~~~~~~~i~~~~~~~~~~~L~~~~~~~--------------------~W~~~glp~d~~~~en~ii~~  135 (217)
                      .++.+  ..+|....+.+....+.       +.++..+.                    .|...+.+       ..+...
T Consensus      1001 ~Ls~e--~~rW~~~~~~~~~~~~~-------l~gd~ll~~~~~~y~g~~~~~~r~~~~~~~~~~~~~-------~~~~~~ 1064 (1395)
T KOG3595|consen 1001 GLSGE--KERWSETSEQFSKQYSR-------LVGDVLLSSAFVAYLGAFDQLYRQSLLRLWESLCTQ-------LKIVLS 1064 (1395)
T ss_pred             hcccc--hHHHHHHHHHHHHHHhh-------hhHHHHhhhhhhhhccccCHHHHHHHHHHhHHhcCc-------cccccc
Confidence            99988  56899988776543211       11222222                    33222111       111222


Q ss_pred             cCCCcceeecchhhHHHHHHhccccCccccccCCCcchHHHhhhcccccccccCCcccCchhhHHHHHHhhcccCCCccC
Q psy12734        136 RGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNPKVN  215 (217)
Q Consensus       136 ~~~r~PlliDP~~~~~~wl~~~~~~~~l~v~~~~l~~le~ai~~G~iv~~~~~~p~~idp~~~~~~~~~~~~~~~~l~~~  215 (217)
                      +....+.+.||+. ...|..            -++|.+..+++||.++..+.+||+++||+.++..|++++++.+++.++
T Consensus      1065 ~~~~~~~l~~~~~-~~~w~~------------~~lp~~~~s~en~~i~~~~~~~~l~id~q~q~~~~i~~~~~~~~~~~i 1131 (1395)
T KOG3595|consen 1065 NFSLISMLVDPTE-ILNWNI------------RGLPADDLSIENGIIITNSNRWPLIIDPQGQANEWIKNKESENKLQVI 1131 (1395)
T ss_pred             ccchHhhcCchHh-hcchhh------------ccCcccccchhHHHHHhccCCCceeecchhhhhHhHhhhhhhccccee
Confidence            3344455666652 223332            299999999999999999999999999999999999999998887765


Q ss_pred             C
Q psy12734        216 Q  216 (217)
Q Consensus       216 ~  216 (217)
                      .
T Consensus      1132 ~ 1132 (1395)
T KOG3595|consen 1132 S 1132 (1395)
T ss_pred             e
Confidence            3

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=95.92  E-value=0.0039  Score=53.84  Aligned_cols=91  Identities=13%  Similarity=0.143  Sum_probs=61.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy12734          2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKI-------RWTADLATLEQNRNQLIGACLLSGAFLCYTSAFT   74 (217)
Q Consensus         2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~-------rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~   74 (217)
                      .+|.++.++++|++.+++.++..++.++..+.....+..       ..+..++....+...+..+...+...+..+..|.
T Consensus       207 ~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li  286 (344)
T PF12777_consen  207 VKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLI  286 (344)
T ss_dssp             HHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence            467777777777777666665555555555555544444       4444444444555666777788888899998888


Q ss_pred             HHHHHHHHHhhHHHhhhhcc
Q psy12734         75 WEFRQQMVYVDWQSNITKLS   94 (217)
Q Consensus        75 ~~~r~~l~~~~w~~~~~~~~   94 (217)
                      .++..+  +.||...+..+.
T Consensus       287 ~~L~~E--~~RW~~~~~~l~  304 (344)
T PF12777_consen  287 SGLSGE--KERWSEQIEELE  304 (344)
T ss_dssp             HCCHHH--HHCCHCHHHHHH
T ss_pred             hhhcch--hhhHHHHHHHHH
Confidence            888888  568998876653

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF15188 CCDC-167: Coiled-coil domain-containing protein 167

Probab=89.51  E-value=5  Score=27.35  Aligned_cols=52  Identities=25%  Similarity=0.245  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12734          7 AMTERQKLQEETDIMMRRLEAADKLIS----------GLGREKIRWTADLATLEQNRNQLIG   58 (217)
Q Consensus         7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~----------~L~~e~~rw~~~~~~l~~~~~~l~g   58 (217)
                      +..|++.+++.++.+..+|++++.-+.          +++.|.......+...++++..|-+
T Consensus         3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk   64 (85)
T PF15188_consen    3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK   64 (85)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            467888899999999999988887553          3456777777777777777766633

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=88.80  E-value=5  Score=26.44  Aligned_cols=53  Identities=13%  Similarity=0.085  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734          4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL   56 (217)
Q Consensus         4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l   56 (217)
                      ++.++..+.-|+.++++.+.+-.....-...|..+..+.++.....+.++..+
T Consensus        13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L   65 (72)
T PF06005_consen   13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444433333333333333333333333333333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=84.76  E-value=6.7  Score=31.69  Aligned_cols=43  Identities=19%  Similarity=0.182  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12734         16 EETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIG   58 (217)
Q Consensus        16 ~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~g   58 (217)
                      +...+++.|++...+--..|-.+.++.+..++..+.++..|-+
T Consensus       135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~  177 (290)
T COG4026         135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEV  177 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444443333444444444444444444444444433

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.96  E-value=8  Score=25.17  Aligned_cols=16  Identities=25%  Similarity=0.337  Sum_probs=6.5

Q ss_pred             HHHhHHHHHhHHHHHH
Q psy12734         31 LISGLGREKIRWTADL   46 (217)
Q Consensus        31 ll~~L~~e~~rw~~~~   46 (217)
                      --..|..|+..|++.+
T Consensus        54 eneqlk~e~~~WQerl   69 (79)
T COG3074          54 ENEQLKEEQNGWQERL   69 (79)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333444444444333

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=81.76  E-value=9.4  Score=23.75  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734         19 DIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ   55 (217)
Q Consensus        19 ~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~   55 (217)
                      .+.+.++.+.+..++.+.+|.....++++.++...+.
T Consensus         3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~   39 (55)
T PF05377_consen    3 DELENELPRIESSINTVKKENEEISESVEKIEENVKD   39 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555555555544433

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=81.16  E-value=2.4  Score=43.61  Aligned_cols=62  Identities=16%  Similarity=0.039  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12734          9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYT   70 (217)
Q Consensus         9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~   70 (217)
                      +|.++++-+...++.+|..++.+.+.|..-+.+-+..++..-.+......|..-+.+-+...
T Consensus      2311 ~E~kRI~~E~~~~e~~L~~~~~~s~dl~~~~l~~r~~YSl~I~~Vh~~~~~md~v~~~~~rs 2372 (3164)
T COG5245        2311 EEEKRIDGEAFLVEDRLTLGKGLSSDLMTFKLRRRSYYSLDILRVHGKIADMDTVHKDVLRS 2372 (3164)
T ss_pred             hHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHhhhhc
Confidence            34444444555667788888888888888887777777766666655555554444444433

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=80.29  E-value=14  Score=24.14  Aligned_cols=52  Identities=10%  Similarity=0.140  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12734          7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIG   58 (217)
Q Consensus         7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~g   58 (217)
                      ...+....+.++++.+.++...+.-...++.....-.+++++++.....+.|
T Consensus         4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r   55 (71)
T PF10779_consen    4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR   55 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555666666666666655544

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=80.22  E-value=9.4  Score=30.86  Aligned_cols=35  Identities=17%  Similarity=0.204  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy12734          4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGRE   38 (217)
Q Consensus         4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e   38 (217)
                      |++...++..|..++.+.+..++..+.-++.|..|
T Consensus       144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E  178 (290)
T COG4026         144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVE  178 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444433333333333

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=80.10  E-value=18  Score=27.23  Aligned_cols=54  Identities=13%  Similarity=0.126  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy12734          7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGAC   60 (217)
Q Consensus         7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~   60 (217)
                      ..+++..+...++.+.+.|..+.........|+..|.+.+++...+...|++..
T Consensus        82 ~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L  135 (159)
T PF04949_consen   82 MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRL  135 (159)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555566666666666666666666677899999999999988888777664

This entry represents proteins annotated as RAB6-interacting golgins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
3vkg_A	3245	X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn		9e-14
3vkh_A	3367	X-Ray Structure Of A Functional Full-Length Dynein		1e-13

>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 1/155 (0%)
Query: 3    KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLL 62
            +Y   + E ++++ E+  +  +++ +  L+  L  E+ RW           + ++G  +L
Sbjct: 2050 EYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVL 2109
Query: 63   SGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLP 122
            + AFL Y   F   FR  ++   W   +  + I   SD  +   L        W++  LP
Sbjct: 2110 ASAFLAYIGFFDQNFRTDLMR-KWMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLP 2168
Query: 123  PDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNR 157
             DEL I+N I+  R   +PL IDP  QA++++ N+
Sbjct: 2169 SDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQ 2203

>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 1/155 (0%)
Query: 3    KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLL 62
            +Y   + E ++++ E+  +  +++ +  L+  L  E+ RW           + ++G  +L
Sbjct: 2172 EYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVL 2231
Query: 63   SGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLP 122
            + AFL Y   F   FR  ++   W   +  + I   SD  +   L        W++  LP
Sbjct: 2232 ASAFLAYIGFFDQNFRTDLMR-KWMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLP 2290
Query: 123  PDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNR 157
             DEL I+N I+  R   +PL IDP  QA++++ N+
Sbjct: 2291 SDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQ 2325

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	6e-58
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	2e-43

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score =  196 bits (499), Expect = 6e-58
 Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 1/164 (0%)

Query: 1    MSKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGAC 60
              +Y   + E ++++ E+  +  +++ +  L+  L  E+ RW           + ++G  
Sbjct: 2048 KEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107

Query: 61   LLSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEG 120
            +L+ AFL Y   F   FR  ++   W   +  + I   SD  +   L        W++  
Sbjct: 2108 VLASAFLAYIGFFDQNFRTDLMR-KWMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANS 2166

Query: 121  LPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLK 164
            LP DEL I+N I+  R   +PL IDP  QA++++ N+     + 
Sbjct: 2167 LPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKIT 2210

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score =  154 bits (391), Expect = 2e-43
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 4/155 (2%)

Query: 12   QKLQE-ETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYT 70
            +KL E    +       +  L+  L  EK RW        +   +LIG C++S  +  Y 
Sbjct: 1878 EKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYF 1937

Query: 71   SAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQN 130
                   R  M+    +  + K ++    ++R    L       +W   GL  ++  ++N
Sbjct: 1938 GHLNERERADMLV-ILKRLLGKFAVKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLEN 1996

Query: 131  -GILSTRGCHFPLCIDPQTQALKWIRNREDKNNLK 164
              I+       P  +DP +  +  I N    N   
Sbjct: 1997 MSIVMNSQDAVPFLLDPSSHMITVISNYY-GNKTV 2030

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	100.0
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	100.0
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	99.68
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	99.21
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	84.35
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	82.25
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	80.65

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=100.00  E-value=6.1e-42  Score=347.84  Aligned_cols=195  Identities=23%  Similarity=0.416  Sum_probs=178.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy12734          2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQM   81 (217)
Q Consensus         2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l   81 (217)
                      ++|+++++|++.|+.+++.++.||++|++|+++|++|+.||++++++++.+...|+|||+++|||++|+|+|+.+||+++
T Consensus      2049 ~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l 2128 (3245)
T 3vkg_A         2049 EEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDL 2128 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHhhhhcccccCCCCCcccccCCHHHHHHHHHcCCCCCchhhhhhHHhhcCCCcceeecchhhHHHHHHhccccC
Q psy12734         82 VYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKN  161 (217)
Q Consensus        82 ~~~~w~~~~~~~~i~~~~~~~~~~~L~~~~~~~~W~~~glp~d~~~~en~ii~~~~~r~PlliDP~~~~~~wl~~~~~~~  161 (217)
                      ++ .|...+++.+||++.+|++.++|++++++..|+.+|||.|++|+|||+|+.++.||||+||||+||.+|||++++++
T Consensus      2129 ~~-~W~~~l~~~~Ip~s~~~~l~~~L~~~~~i~~W~~~GLP~D~lSiENaiiv~~~~R~PLlIDPq~Qa~~WIk~~~~~~ 2207 (3245)
T 3vkg_A         2129 MR-KWMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADK 2207 (3245)
T ss_dssp             HH-HHHHHHHHHTCCCCTTCCHHHHTSCHHHHHHHHHTTCCSSHHHHHHHHHTTSCSSCEEEECTTSHHHHHHHHHTGGG
T ss_pred             HH-HHHHHHHhcCCCCCCCCCHHHHcCCHHHHHHHHhCCCCCCchhhhHHHHHhcCCCceEEEChHHHHHHHHHHHhccC
Confidence            86 79999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccccccC----CCcchHHHhhhcccccc--cccCCcccCchh
Q psy12734        162 NLKWNSE----GLPPDELSIQNGILSTR--GCHFPLCIDPQT  197 (217)
Q Consensus       162 ~l~v~~~----~l~~le~ai~~G~iv~~--~~~~p~~idp~~  197 (217)
                      ++.|+++    |++++|.||++|.+|+.  -+.+++++||-+
T Consensus      2208 ~l~v~~~~d~~f~~~LE~ai~fG~pvLienvE~lDP~L~pvL 2249 (3245)
T 3vkg_A         2208 KITKTSFLDSSFMKNLESALRFGCPLLVQDVENIDPVLNPVL 2249 (3245)
T ss_dssp             CCCCCCC-----HHHHHHHHHHTCCEECCCCC----------
T ss_pred             CceEeecCchhHHHHHHHHHHcCCeEEEccccccchhHHHHH
Confidence            8999997    99999999999998864  245556666654

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=100.00  E-value=1.5e-37  Score=314.70  Aligned_cols=180  Identities=19%  Similarity=0.244  Sum_probs=151.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHhhHHHhhhh
Q psy12734         13 KLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQSNITK   92 (217)
Q Consensus        13 ~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l~~~~w~~~~~~   92 (217)
                      +.+.++++++.+++  ++|+++|++|+.||.+++++++.+...|+||++++|||++|+|+|+.+||+++++ .|...+++
T Consensus      1882 e~~~~v~~l~~~l~--~~Li~~L~~E~~RW~~~~~~~~~~~~~l~Gd~ll~aafisY~G~f~~~~R~~l~~-~W~~~~~~ 1958 (2695)
T 4akg_A         1882 ESVLKVNELNKTLS--ISLVKSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERADMLV-ILKRLLGK 1958 (2695)
T ss_dssp             HHC-----------------CTTHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHHh
Confidence            33334555555555  7899999999999999999999999999999999999999999999999999986 79999999


Q ss_pred             cccccCCCCCcccccCCHHHHHHHHHcCCCCCchhhhhhHHhhcC-CCcceeecchhhHHHHHHhccccCccccccC---
Q psy12734         93 LSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRG-CHFPLCIDPQTQALKWIRNREDKNNLKWNSE---  168 (217)
Q Consensus        93 ~~i~~~~~~~~~~~L~~~~~~~~W~~~glp~d~~~~en~ii~~~~-~r~PlliDP~~~~~~wl~~~~~~~~l~v~~~---  168 (217)
                      .+||++.+|++.++|++++++..|+.+|||.|++|+|||+|+.++ .||||+||||+||.+|||+++ ++++.|+++   
T Consensus      1959 ~~ip~~~~~~~~~~L~~~~~i~~W~~~GLP~D~~s~eNaii~~~s~~r~PL~IDPq~qa~~wik~~~-~~~l~v~~~~d~ 2037 (2695)
T 4akg_A         1959 FAVKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHMITVISNYY-GNKTVLLSFLEE 2037 (2695)
T ss_dssp             TTCCCCSSCCHHHHHCCHHHHHHHHHHTCCSCHHHHHHHHHHHHCCSSEEEEECSSTTHHHHHHHHH-GGGEEEECTTSS
T ss_pred             cCCCCCCCCCHHHHhcCHHHHHHHHhcCCCCCchhHhHHHHHhcccccCceEECcHHHHHHHHHHHh-cCCceEeeCCcH
Confidence            999999999999999999999999999999999999999999997 999999999999999999985 466999997   


Q ss_pred             -CCcchHHHhhhcccccc--cccCCcccCch
Q psy12734        169 -GLPPDELSIQNGILSTR--GCHFPLCIDPQ  196 (217)
Q Consensus       169 -~l~~le~ai~~G~iv~~--~~~~p~~idp~  196 (217)
                       |++++|.||++|.+|+.  .+.+++++||-
T Consensus      2038 ~f~~~lE~ai~~G~pvLien~E~lDp~L~pv 2068 (2695)
T 4akg_A         2038 GFVKRLENAIRFGSVVIIQDGEFFDPIISRL 2068 (2695)
T ss_dssp             THHHHHHHHHHTTCEEEESCSSSCCSTTHHH
T ss_pred             HHHHHHHHHHHcCCeEEEccccccchhHHHH
Confidence             89999999999998865  34444444444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=99.68  E-value=2.3e-16  Score=161.96  Aligned_cols=180  Identities=20%  Similarity=0.337  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHhhHH
Q psy12734          8 MTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQ   87 (217)
Q Consensus         8 ~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l~~~~w~   87 (217)
                      .++.+.++++++.++.+|+.++..++.++++....++++++...+.+.|..++..+...+..+..|..++..|  +.||.
T Consensus      2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~E--k~RW~ 2090 (3245)
T 3vkg_A         2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSE--RGRWE 2090 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--cccHH
Confidence            3566777778888888888888888888888888888888888888999999999999999999999999999  67999


Q ss_pred             Hhhhhcc----------------cccCCCCCcccccCCHHHHHHHHH----cCCCC-CchhhhhhHHhhcCCCcceeecc
Q psy12734         88 SNITKLS----------------IPIVSDFRLEKELCDDVMISQWNS----EGLPP-DELSIQNGILSTRGCHFPLCIDP  146 (217)
Q Consensus        88 ~~~~~~~----------------i~~~~~~~~~~~L~~~~~~~~W~~----~glp~-d~~~~en~ii~~~~~r~PlliDP  146 (217)
                      +.+..++                +.|.++|+-.   .+...+..|..    .|+|. .++++.+.           +.||
T Consensus      2091 ~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~---~R~~l~~~W~~~l~~~~Ip~s~~~~l~~~-----------L~~~ 2156 (3245)
T 3vkg_A         2091 QQSENFNTQMSTVVGDVVLASAFLAYIGFFDQN---FRTDLMRKWMIRLDSVGIKFKSDLSVPSF-----------LSKP 2156 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHH---HHHHHHHHHHHHHHHHTCCCCTTCCHHHH-----------TSCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHhcCCCCCCCCCHHHH-----------cCCH
Confidence            8877653                2233333321   12233567863    46665 33554432           2566


Q ss_pred             hhhHHHHHHhccccCccccccCCCcchHHHhhhcccccccccCCcccCchhhHHHHHHhhcccCCCccCC
Q psy12734        147 QTQALKWIRNREDKNNLKWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNPKVNQ  216 (217)
Q Consensus       147 ~~~~~~wl~~~~~~~~l~v~~~~l~~le~ai~~G~iv~~~~~~p~~idp~~~~~~~~~~~~~~~~l~~~~  216 (217)
                      . ....|-.+            |||.|+.|++||+|+..+.+||++||||+||++||++++++++|+|+.
T Consensus      2157 ~-~i~~W~~~------------GLP~D~lSiENaiiv~~~~R~PLlIDPq~Qa~~WIk~~~~~~~l~v~~ 2213 (3245)
T 3vkg_A         2157 E-ERLNWHAN------------SLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTS 2213 (3245)
T ss_dssp             H-HHHHHHHT------------TCCSSHHHHHHHHHTTSCSSCEEEECTTSHHHHHHHHHTGGGCCCCCC
T ss_pred             H-HHHHHHhC------------CCCCCchhhhHHHHHhcCCCceEEEChHHHHHHHHHHHhccCCceEee
Confidence            4 45567543            999999999999999999999999999999999999999988899875

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=99.21  E-value=5.6e-12  Score=129.14  Aligned_cols=80  Identities=15%  Similarity=0.253  Sum_probs=60.0

Q ss_pred             HHHHHHH----cCCCC-CchhhhhhHHhhcCCCcceeecchhhHHHHHHhccccCccccccCCCcchHHHhhhccccccc
Q psy12734        112 MISQWNS----EGLPP-DELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPDELSIQNGILSTRG  186 (217)
Q Consensus       112 ~~~~W~~----~glp~-d~~~~en~ii~~~~~r~PlliDP~~~~~~wl~~~~~~~~l~v~~~~l~~le~ai~~G~iv~~~  186 (217)
                      .+..|..    .++|. .++++.+.           +.||. ....|..+            |||.|+.|++||+++..+
T Consensus      1948 l~~~W~~~~~~~~ip~~~~~~~~~~-----------L~~~~-~i~~W~~~------------GLP~D~~s~eNaii~~~s 2003 (2695)
T 4akg_A         1948 MLVILKRLLGKFAVKYDVNYRFIDY-----------LVTLD-EKMKWLEC------------GLDKNDYFLENMSIVMNS 2003 (2695)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCCHHHH-----------HCCHH-HHHHHHHH------------TCCSCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCCCCCCCCHHHH-----------hcCHH-HHHHHHhc------------CCCCCchhHhHHHHHhcc
Confidence            3467863    46664 33444432           25664 45567544            999999999999999987


Q ss_pred             -ccCCcccCchhhHHHHHHhhcccCCCccCC
Q psy12734        187 -CHFPLCIDPQTQALKWIRNREDKNNPKVNQ  216 (217)
Q Consensus       187 -~~~p~~idp~~~~~~~~~~~~~~~~l~~~~  216 (217)
                       .+||++||||+||++||+++++ ++|+|++
T Consensus      2004 ~~r~PL~IDPq~qa~~wik~~~~-~~l~v~~ 2033 (2695)
T 4akg_A         2004 QDAVPFLLDPSSHMITVISNYYG-NKTVLLS 2033 (2695)
T ss_dssp             CSSEEEEECSSTTHHHHHHHHHG-GGEEEEC
T ss_pred             cccCceEECcHHHHHHHHHHHhc-CCceEee
Confidence             9999999999999999999864 4688875

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=84.35  E-value=5.8  Score=28.94  Aligned_cols=48  Identities=21%  Similarity=0.210  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q psy12734          3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLE   50 (217)
Q Consensus         3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~   50 (217)
                      +|+++.+....++.++..+..+.+.+..-+..|..++..-.+.+..++
T Consensus        74 KyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE  121 (147)
T 2b9c_A           74 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE  121 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            566666666667777777777777776666666666666555555544

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=82.25  E-value=7.9  Score=24.98  Aligned_cols=53  Identities=13%  Similarity=0.237  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734          4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL   56 (217)
Q Consensus         4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l   56 (217)
                      |+..-.|.+-|...-+++..--...+.++..|..|...+...++.++.+.+.|
T Consensus        20 ~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL   72 (78)
T 3iv1_A           20 MDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL   72 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444555666666666666666666666555443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=80.65  E-value=9.4  Score=24.81  Aligned_cols=24  Identities=21%  Similarity=0.309  Sum_probs=11.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHH
Q psy12734         35 LGREKIRWTADLATLEQNRNQLIG   58 (217)
Q Consensus        35 L~~e~~rw~~~~~~l~~~~~~l~g   58 (217)
                      |..+..++++.....+.++..|.|
T Consensus        53 L~~en~qLk~E~~~wq~Rl~~LLg   76 (81)
T 2jee_A           53 LERENNHLKEQQNGWQERLQALLG   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1vp7a_	68	Exonuclease VII small subunit XseB {Bordetella per	80.75

>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: XseB-like
family: XseB-like
domain: Exonuclease VII small subunit XseB
species: Bordetella pertussis [TaxId: 520]

Probab=80.75  E-value=3.3  Score=24.51  Aligned_cols=59  Identities=19%  Similarity=0.043  Sum_probs=46.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy12734          2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGAC   60 (217)
Q Consensus         2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~   60 (217)
                      ..|++++.+.+.+-.+++.-.-.|+.+-++...-..-....+..+++.+.+++.+.+|.
T Consensus         6 ~sfEe~l~~LE~IV~~LE~g~l~Leesl~~ye~G~~L~~~C~~~L~~ae~ki~~l~~~~   64 (68)
T d1vp7a_           6 QDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDL   64 (68)
T ss_dssp             CSHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            46899999988888888888888888888887777777777888888887777776653