Psyllid ID: psy1277

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310--
MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLGHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDNLKFSELQLAVTHKKPPPQALTQPAINAQSSGAAAQTMAAQSSTPPLTMQQPPEPRYSYTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRRYCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAALFLPKPEPPPPGPPVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITVIENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLNAATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSLVVGVSPTPTRSKMFQTLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFLNFAVDLDTGATIRNS
ccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccEEEEEEHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccHHHcccccccccHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccccc
cccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccEEEEEEHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccHHHcccccccccHHHccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccHHHcccccccEEEcccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccHEEccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccccccHHccccHHccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccEHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccHHHHcccccEccccHHHHccccHHHHHHHHHHccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccHHHHHHcc
MKRASIEFNFHVLYSnfldeiklpdvtdMVIKETYRNIKVLLRSdkgianfsdRTLLKNLGHWLGMltlgrnrpilMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKdlvpsyylkdpdnlkfsELQLAvthkkpppqaltqpainaqsSGAAAQTMaaqsstppltmqqppeprysytsvnvanigniaphivINSQlalfqaqpvlkpLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVkkdfaldpdegrmRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTaitnatpqqkELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYErrkharseqrryCDSQVLTYQaermpeqirlkvggvtpqqMAVYEEFArnipgfqplserdaalflpkpeppppgppvsafngvdemGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKLALFqaqpvlkpLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVkkdfaldpdegrmRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITVIENLldghthipndpeltlRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEergtagvtesdMLNTLEVLIRIAshhrqppegLTALIDMLRanhhdqpmlverapgaqtlnsglpnfslnaatgpavhihsgilqvrgirdlddppglfektEYLLREWVTiyhspagvkdpnKAFTLFVHQMnchgilksDELITRFFRFATSlvvgvsptptrsKMFQTLDAYAKLIALLVKHsgsgehansntkINLLNKVLGIISGVLItdqearqhefhqlpyHRIFIMLFLelnvpdpvlEAINFQVLSAYCSVLHilrpskqpgfAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHilrpskqpgfAYAWLEIVAHRTFIGRMLvitphqkgwPLYAQLLIDIFKFLAPFlrnvelskpnltfYKGVLRVLLVLLHDfpeflcdyhyqfcdvipaNCIQMRNLILsafpgnmrlpdpftpnlkvdtladinqaprmhadfasliqpatfKKDLDaylktrspVTFLAEVRAAVqvshepgsrynTELMNAIVLYVGTQAILSIRakslspnnktiahSAHMDIFLNFAvdldtgatirns
MKRASIEFNFHVLysnfldeiklpdvTDMVIKETYRNIKVllrsdkgianfSDRTLLKNLGHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALiqkdlvpsyyLKDPDNLKFSELQLAVTHKKPPPQALTQPAINAQSSGAAAQTMAAQSSTPPLTMQQPPEPRYSYTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAItnatpqqkELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEyerrkharseqrrycdSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAALFLPKPEPPPPGPPVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKLalfqaqpvlKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITVIENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDlrafgvqwtnkQITRCLIECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLNAATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSlvvgvsptptrSKMFQTLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFLAEVRAAVqvshepgsryNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFLNFAVdldtgatirns
MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLGHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDNLKFSELQLAVTHKKPPPQALTQPAINaqssgaaaqtmaaqssTPPLTMQQPPEPRYSYTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRRYCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAALFLpkpeppppgppVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITVIENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLNAATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSLVVGVSPTPTRSKMFQTLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFLNFAVDLDTGATIRNS
*****IEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLGHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDNLKFSELQL************************************************SYTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALD*******SAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAG**************YCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGF**************************FNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALD*******SAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITVIENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHR***EGLTALIDMLRA*********************LPNFSLNAATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSLVVGVSPTPTRSKMFQTLDAYAKLIALLVKHSGSG*HANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFLNFAVDLDTG******
*KRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGI**FSDRTLLKNLGHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRD*******************************************************************************************IAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFT************LMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLA*******************QVLTYQAERMPEQIRLK*GGVTPQQMAVYEEFAR************************************************************************************************************LVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITVIENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSME**LNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIR************************************************************************DPPGLFEKTEYLLREWVTIYHSPAG*KDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSLVVGVSP*PTRSKMFQTLDAYAKLIALLVKHSGS******NTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPF********LADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQA********************HMDIFLNFAVDLDTGATI***
MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLGHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDNLKFSELQLAVTHKKPPPQALTQPAI****************************PRYSYTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYE***********YCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAALFLPKPEPPPPGPPVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITVIENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLNAATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSLVVGVSPTPTRSKMFQTLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFLNFAVDLDTGATIRNS
****SIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLGHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDNL*****************************************************RYSYTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRRYCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQP**ERDAALFLPKPEPPPPGPPVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITVIENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQPPEGLTALIDMLRANHHD*******************************************RDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSLVVGVSPTPTRSKMFQTLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKS****N*TIAHSAHMDIFLNFAVDLDTGATIRNS
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MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLGHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDNLKFSELQLAVTHKKPPPQALTQPAINAQSSGAAAQTMAAQSSTPPLTMQQPPEPRYSYTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRRYCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAALFLPKPEPPPPGPPVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITVIENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLNAATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSLVVGVSPTPTRSKMFQTLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFLNFAVDLDTGATIRNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1312 2.2.26 [Sep-21-2011]
A0JP85 2388 CCR4-NOT transcription co yes N/A 0.442 0.242 0.570 0.0
A1A5H6 2374 CCR4-NOT transcription co yes N/A 0.442 0.244 0.565 0.0
A5YKK6 2376 CCR4-NOT transcription co yes N/A 0.442 0.244 0.565 0.0
Q6ZQ08 2375 CCR4-NOT transcription co yes N/A 0.442 0.244 0.564 0.0
P87112 2100 General negative regulato yes N/A 0.278 0.174 0.266 1e-35
P25655 2108 General negative regulato yes N/A 0.298 0.185 0.262 6e-32
>sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1 Back     alignment and function desciption
 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/668 (57%), Positives = 460/668 (68%), Gaps = 88/668 (13%)

Query: 653  IENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRY 712
            +E LLD  +    D +L LRY++ HL ++KALQD RA+G  W NKQITRCLIECR+EY+Y
Sbjct: 1678 VEGLLDATSGA--DADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKY 1735

Query: 713  NLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESD 772
            N+EAV+ LIR  L+++ QYDL LA SMENGLNY+AVAF MQL++  LV+ER  + VTE++
Sbjct: 1736 NVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVSHVTEAE 1795

Query: 773  MLNTLEVLIRIASHHR-QPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLN 831
              +T+E L+RI +H R   PEGL  L+D+LR+N      ++ERA G              
Sbjct: 1796 FFHTIETLMRINAHSRGNAPEGLPQLMDVLRSNFD---AMMERAHG-------------- 1838

Query: 832  AATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFV 891
               GP   +HSGI Q     + DDPPGL EK EYLLREWV +YHS A  +D  KAF+ FV
Sbjct: 1839 ---GPNFMMHSGISQAS---EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFV 1892

Query: 892  HQMNCHGILKSDELITRFFRFATSLVVGVS--------------PTPTRSKMFQTLDAYA 937
             QM+  GILK+D+LITRFFR  T + V +S              PT  R+K +  LDA+ 
Sbjct: 1893 GQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFV 1952

Query: 938  KLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLF 997
            +LIALLVKHSG  E  N+ TKINLLNKVLGI+ GVL+ D E RQ EF QLPYHRIFIML 
Sbjct: 1953 RLIALLVKHSG--EATNTVTKINLLNKVLGIVVGVLLQDHEVRQSEFQQLPYHRIFIMLL 2010

Query: 998  LELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQ 1057
            LELN P+ VLE INFQ L+A+C+  HILRP+K PGF YAWLE+++HR FI RML  TP Q
Sbjct: 2011 LELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQ 2070

Query: 1058 KVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFK 1117
            K                                             GWP+YAQLLID+FK
Sbjct: 2071 K---------------------------------------------GWPMYAQLLIDLFK 2085

Query: 1118 FLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLIL 1177
            +LAPFLRNVEL+KP    YKG LRVLLVLLHDFPEFLCDYHY FCDVIP NCIQ+RNLIL
Sbjct: 2086 YLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLIL 2145

Query: 1178 SAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTF 1237
            SAFP NMRLPDPFTPNLKVD L++IN APR+  +F  ++ P  FKKDLD+YLKTRSPVTF
Sbjct: 2146 SAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSPVTF 2204

Query: 1238 LAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFL 1297
            L+E+R+ +QVS+EPG+RYN +L+NA+VLYVGTQAI  I  K  +P+  TI HSAHMDIF 
Sbjct: 2205 LSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQ 2264

Query: 1298 NFAVDLDT 1305
            N AVDLDT
Sbjct: 2265 NLAVDLDT 2272
Belongs to the CCR4-NOT complex that functions as general transcription regulation complex. Acts as a transcriptional repressor. Represses the ligand-dependent transcriptional activation by nuclear receptors.
Xenopus tropicalis (taxid: 8364)
>sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2 SV=1 Back     alignment and function description
>sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2 Back     alignment and function description
>sp|Q6ZQ08|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2 Back     alignment and function description
>sp|P87112|NOT1_SCHPO General negative regulator of transcription subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not1 PE=1 SV=1 Back     alignment and function description
>sp|P25655|NOT1_YEAST General negative regulator of transcription subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC39 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1312
380018069 2397 PREDICTED: CCR4-NOT transcription comple 0.445 0.244 0.601 0.0
328785784 2397 PREDICTED: CCR4-NOT transcription comple 0.445 0.244 0.601 0.0
383858423 2397 PREDICTED: CCR4-NOT transcription comple 0.445 0.244 0.601 0.0
328785786 2370 PREDICTED: CCR4-NOT transcription comple 0.444 0.245 0.598 0.0
380018071 2370 PREDICTED: CCR4-NOT transcription comple 0.444 0.245 0.598 0.0
307179394 2402 CCR4-NOT transcription complex subunit 1 0.445 0.243 0.601 0.0
383858425 2371 PREDICTED: CCR4-NOT transcription comple 0.444 0.245 0.598 0.0
307197189 2401 CCR4-NOT transcription complex subunit 1 0.449 0.245 0.593 0.0
332030325 2403 CCR4-NOT transcription complex subunit 1 0.446 0.243 0.588 0.0
345484784 2397 PREDICTED: CCR4-NOT transcription comple 0.445 0.244 0.593 0.0
>gi|380018069|ref|XP_003692959.1| PREDICTED: CCR4-NOT transcription complex subunit 1 isoform 1 [Apis florea] Back     alignment and taxonomy information
 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/665 (60%), Positives = 482/665 (72%), Gaps = 80/665 (12%)

Query: 653  IENLLDGHTHIPN--DPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEY 710
            +E LLDG T      D E+ LRY++LHLRI+K LQD RA+G+QWTNK +TRCL ECREE+
Sbjct: 1685 VEGLLDGPTISSGVVDSEIILRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLTECREEF 1744

Query: 711  RYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTE 770
            RYN EAVD LIR+ LI LPQYDLALA ++++G N +A AF MQL+Q YL++ER T  VTE
Sbjct: 1745 RYNFEAVDYLIRSHLISLPQYDLALAQAIDSG-NAMATAFAMQLMQLYLIDERQTTHVTE 1803

Query: 771  SDMLNTLEVLIRIASHHRQPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSL 830
            SD+ NT+E+L RIA HHR PPEGLT+L++ LRANH D  +L +RAP              
Sbjct: 1804 SDLCNTIEILARIA-HHRAPPEGLTSLMESLRANH-DPAVLADRAPA------------- 1848

Query: 831  NAATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLF 890
                GP  HIHSGILQVR  RD DDPPGL EKTEYLLREWV+++H+P   +DP KAF +F
Sbjct: 1849 ----GPTAHIHSGILQVRA-RDFDDPPGLMEKTEYLLREWVSMHHNPTHARDPTKAFGMF 1903

Query: 891  VHQMNCHGILKSDELITRFFRFATSLVVGV----------SPTPTRSKMFQTLDAYAKLI 940
            VHQMN HGILK+D+LITRFF+ +T + V +          +P+  R+K F +LDA+ +L+
Sbjct: 1904 VHQMNIHGILKTDDLITRFFKLSTQMCVDLCYRALAETNAAPSVVRAKCFHSLDAFVRLV 1963

Query: 941  ALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLEL 1000
            ALLVKHSG  +  N++TKINLLNKVLGI++GVL+ D E R  +FHQLPYHRIFIMLFLEL
Sbjct: 1964 ALLVKHSG--DSTNTHTKINLLNKVLGIVAGVLLQDHEIRGTDFHQLPYHRIFIMLFLEL 2021

Query: 1001 NVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVL 1060
              P+PVLEA+N+QVL+A+C  LHILRP+K  GF YAWLE+V+HR FIGRML ITP QK  
Sbjct: 2022 CAPEPVLEAVNYQVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCW 2081

Query: 1061 SAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLA 1120
              Y                                             AQLLID+FK+LA
Sbjct: 2082 GMY---------------------------------------------AQLLIDLFKYLA 2096

Query: 1121 PFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAF 1180
            P+LRN EL+KP    YKG LRVLLVLLHDFPEFLCDYHY FCDVIP NCIQM+NLILSA+
Sbjct: 2097 PYLRNAELAKPVTLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMKNLILSAY 2156

Query: 1181 PGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFLAE 1240
            P NMRLPDPFTPNLKVD L +I  APR+  +FAS+IQP +FKK+LD+YLK R+PVTFL+E
Sbjct: 2157 PRNMRLPDPFTPNLKVDMLQEIAHAPRVLTNFASMIQPLSFKKELDSYLKARAPVTFLSE 2216

Query: 1241 VRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFLNFA 1300
            +R+ +QVS E G RYN +LMNA+VLYVGTQAI  IR+K  +PN  TIAHSAHMDIF N A
Sbjct: 2217 LRSNLQVSQEAGVRYNIQLMNALVLYVGTQAIAFIRSKGHTPNMSTIAHSAHMDIFQNLA 2276

Query: 1301 VDLDT 1305
            VDLDT
Sbjct: 2277 VDLDT 2281

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328785784|ref|XP_003250656.1| PREDICTED: CCR4-NOT transcription complex subunit 1 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|383858423|ref|XP_003704701.1| PREDICTED: CCR4-NOT transcription complex subunit 1 isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|328785786|ref|XP_395830.3| PREDICTED: CCR4-NOT transcription complex subunit 1 isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|380018071|ref|XP_003692960.1| PREDICTED: CCR4-NOT transcription complex subunit 1 isoform 2 [Apis florea] Back     alignment and taxonomy information
>gi|307179394|gb|EFN67724.1| CCR4-NOT transcription complex subunit 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383858425|ref|XP_003704702.1| PREDICTED: CCR4-NOT transcription complex subunit 1 isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|307197189|gb|EFN78511.1| CCR4-NOT transcription complex subunit 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332030325|gb|EGI70068.1| CCR4-NOT transcription complex subunit 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|345484784|ref|XP_001599430.2| PREDICTED: CCR4-NOT transcription complex subunit 1 [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1312
FB|FBgn0085436 2505 Not1 "Not1" [Drosophila melano 0.188 0.098 0.676 4.5e-274
UNIPROTKB|E1BXD42129 LOC100858397 "Uncharacterized 0.403 0.248 0.511 1.1e-242
MGI|MGI:24424022375 Cnot1 "CCR4-NOT transcription 0.403 0.222 0.505 1e-241
UNIPROTKB|G3V7M02376 Cnot1 "RCG39079" [Rattus norve 0.403 0.222 0.505 2.7e-241
UNIPROTKB|F1MHU92371 CNOT1 "Uncharacterized protein 0.403 0.223 0.503 2.7e-241
UNIPROTKB|A5YKK62376 CNOT1 "CCR4-NOT transcription 0.403 0.222 0.503 3.5e-241
UNIPROTKB|F1RFU32375 CNOT1 "Uncharacterized protein 0.402 0.222 0.503 3.2e-240
ZFIN|ZDB-GENE-040915-12375 cnot1 "CCR4-NOT transcription 0.406 0.224 0.501 4.2e-240
WB|WBGene00002845 2641 let-711 [Caenorhabditis elegan 0.185 0.092 0.488 1.7e-174
DICTYBASE|DDB_G0276029 2526 DDB_G0276029 "putative CCR4-NO 0.181 0.094 0.484 1e-134
FB|FBgn0085436 Not1 "Not1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 910 (325.4 bits), Expect = 4.5e-274, Sum P(4) = 4.5e-274
 Identities = 167/247 (67%), Positives = 198/247 (80%)

Query:  1059 VLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKF 1118
             ++SA+    H+L PS  PGF +AWLE+++HR F+GR+LV  P QKGWPLYAQLL D+FK+
Sbjct:  2133 IVSAFAYTYHLLNPSVAPGFCFAWLELISHRVFLGRILVQIPGQKGWPLYAQLLQDLFKY 2192

Query:  1119 LAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILS 1178
             LAPFLRN EL KP    YKG LRVLLVLLHDFPEFLCDYH+ FCD IP NC+QMRN+ILS
Sbjct:  2193 LAPFLRNTELGKPVQLLYKGTLRVLLVLLHDFPEFLCDYHFGFCDTIPPNCVQMRNIILS 2252

Query:  1179 AFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFL 1238
             AFP NMRLPDPFTPNLKVD L+D + AP++ + +   IQPA FKKDLD+YLK R+PVTFL
Sbjct:  2253 AFPRNMRLPDPFTPNLKVDMLSDSSNAPKVLSSYIMNIQPANFKKDLDSYLKARAPVTFL 2312

Query:  1239 AEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFLN 1298
             +E+R  +QV+ EPG+RYN  LMNA+V+YVGTQAI  IR K+  PN   IAHSAHMDIF N
Sbjct:  2313 SELRGHLQVTSEPGTRYNMALMNALVMYVGTQAIALIRNKNFVPNTSNIAHSAHMDIFQN 2372

Query:  1299 FAVDLDT 1305
              AVDLDT
Sbjct:  2373 LAVDLDT 2379
GO:0048813 "dendrite morphogenesis" evidence=IMP
GO:0007517 "muscle organ development" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP
GO:0030014 "CCR4-NOT complex" evidence=IDA
GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI
GO:0022008 "neurogenesis" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
UNIPROTKB|E1BXD4 LOC100858397 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2442402 Cnot1 "CCR4-NOT transcription complex, subunit 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3V7M0 Cnot1 "RCG39079" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MHU9 CNOT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A5YKK6 CNOT1 "CCR4-NOT transcription complex subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFU3 CNOT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040915-1 cnot1 "CCR4-NOT transcription complex, subunit 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00002845 let-711 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276029 DDB_G0276029 "putative CCR4-NOT complex subunit 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6ZQ08CNOT1_MOUSENo assigned EC number0.56430.44200.2442yesN/A
A1A5H6CNOT1_DANRENo assigned EC number0.56520.44200.2443yesN/A
A0JP85CNOT1_XENTRNo assigned EC number0.57030.44200.2428yesN/A
A5YKK6CNOT1_HUMANNo assigned EC number0.56580.44200.2441yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1312
pfam04054375 pfam04054, Not1, CCR4-Not complex component, Not1 1e-106
pfam12842147 pfam12842, DUF3819, Domain of unknown function (DU 1e-56
COG51032005 COG5103, CDC39, Cell division control protein, neg 4e-45
pfam12842147 pfam12842, DUF3819, Domain of unknown function (DU 2e-36
COG51032005 COG5103, CDC39, Cell division control protein, neg 1e-33
COG5103 2005 COG5103, CDC39, Cell division control protein, neg 1e-12
>gnl|CDD|217865 pfam04054, Not1, CCR4-Not complex component, Not1 Back     alignment and domain information 
 Score =  341 bits (877), Expect = e-106
 Identities = 128/258 (49%), Positives = 166/258 (64%), Gaps = 11/258 (4%)

Query: 1056 HQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDI 1115
              +   A+   LH L+P K PGF +AWLE+++HR F+ RML   P+QKGWPLY +LLID+
Sbjct: 18   DSQFYLAFAEYLHSLQPIKYPGFVFAWLELISHRMFLPRML-RLPNQKGWPLYVKLLIDL 76

Query: 1116 FKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNL 1175
             KFL  FL+N  LS      YKG LR+LLVLLHDFPEFL +YHYQ CD IP NCIQ+RNL
Sbjct: 77   LKFLDEFLKNANLSDAVKVLYKGTLRILLVLLHDFPEFLIEYHYQLCDAIPPNCIQLRNL 136

Query: 1176 ILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPV 1235
            ILSAFP NM+LPDPFTP LKVD L +I +AP++  D  + +Q A  KK +D YL+ R   
Sbjct: 137  ILSAFPKNMKLPDPFTPGLKVDRLPEIKEAPKILYDPVADLQSAGLKKPVDNYLRIRPSE 196

Query: 1236 TFLAEVRAAVQVSHE--------PGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTI 1287
            + L  +   + +S +           + N +L+NA+VL+VG QA+L I  KS + N  T 
Sbjct: 197  SLLRTICNGLYLSEDEQTVGIGYDPVKVNVKLINALVLHVGIQAVLEILKKSQNANFNTK 256

Query: 1288 AHSAHMDIFLNFAVDLDT 1305
              S HM +  N A +LD 
Sbjct: 257  --SPHMALLSNLANELDP 272

The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID. Length = 375
>gnl|CDD|221802 pfam12842, DUF3819, Domain of unknown function (DUF3819) Back     alignment and domain information
>gnl|CDD|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription] Back     alignment and domain information
>gnl|CDD|221802 pfam12842, DUF3819, Domain of unknown function (DUF3819) Back     alignment and domain information
>gnl|CDD|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription] Back     alignment and domain information
>gnl|CDD|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1312
KOG1831|consensus 1591 100.0
COG5103 2005 CDC39 Cell division control protein, negative regu 100.0
PF04054379 Not1: CCR4-Not complex component, Not1; InterPro: 100.0
PF12842147 DUF3819: Domain of unknown function (DUF3819); Int 100.0
KOG1831|consensus 1591 99.86
PF12842147 DUF3819: Domain of unknown function (DUF3819); Int 99.63
COG5103 2005 CDC39 Cell division control protein, negative regu 99.29
PF04054 379 Not1: CCR4-Not complex component, Not1; InterPro: 97.23
KOG1467|consensus556 83.37
>KOG1831|consensus Back     alignment and domain information 
Probab=100.00  E-value=2e-200  Score=1809.60  Aligned_cols=1043  Identities=39%  Similarity=0.599  Sum_probs=851.6

Q ss_pred             CccccccccchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccccccchhhHHHhhhhhhhhhhhccCccccccCC
Q psy1277           1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLGHWLGMLTLGRNRPILMVDL   80 (1312)
Q Consensus         1 ~~Ras~EpN~H~lY~~~l~~l~~~~l~~~vl~~T~~~i~~lL~s~k~~~~~~eRs~LKNLG~WLG~iTLarnkPI~~~~l   80 (1312)
                      +||||+|+|||+||.+|+++++++        +|                -+||++|||||||||.|||||||||++.++
T Consensus       420 ~qR~S~E~Nf~~LYskFi~ai~n~--------~t----------------~~dk~~LKNLgsWLG~iTl~rNkPI~~l~l  475 (1591)
T KOG1831|consen  420 TQRVSKEINFHELYSKFISAIKNS--------VT----------------ESDKRLLKNLGSWLGEITLGRNKPIKELDL  475 (1591)
T ss_pred             hhhhhcccchHHHHHHHHHHHhCc--------cc----------------hhHHHHHHHHHHHHHHHHHhcCCchHHhhh
Confidence            589999999999999999999998        22                189999999999999999999999999999


Q ss_pred             ChHHHHHHHHHhCCceeeEeehhhHHHhhhccccccCCCCchhHHHHHHHHh--hccCCCCcchhHHHHHhhcccccccc
Q psy1277          81 DLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVEIFLASLVTLVG--VQNTLLPSSLHALIEALVALRRTRDA  158 (1312)
Q Consensus        81 ~~K~LL~eay~~g~~~L~~viPFV~KvLe~~~~SkvF~pPNPW~~~il~lL~--~~~~~lKlnLkFEIEvL~~~~~~~~~  158 (1312)
                      |||+||+|||++|+  +..|+|||||||+.|.+|+|||||||||||||++|+  |++||||+||||||||||        
T Consensus       476 ~~kslLlEaY~sg~--ll~VvPFVaKIL~~asksrIFkpPnpW~~gIlklL~ELh~e~d~klnLkFEIEVLl--------  545 (1591)
T KOG1831|consen  476 DFKSLLLEAYGSGR--LLPVVPFVAKILEGASKSRIFKPPNPWTMGILKLLAELHQEADLKLNLKFEIEVLL--------  545 (1591)
T ss_pred             hHHHHHHHHhccCc--eeecchHHHHHHHhhhhccccCCCCchHHHHHHHHHHhcccccceeeeeeeeeehh--------
Confidence            99999999999996  999999999999999999999999999999999999  999999999999999999        


Q ss_pred             cccccccccccccccccCCCcchhhhHHHhhhccCCCCCCCCCchhhhhccccccccccccCCCCCCCCCCCCCCCCccc
Q psy1277         159 HSAVALIQKDLVPSYYLKDPDNLKFSELQLAVTHKKPPPQALTQPAINAQSSGAAAQTMAAQSSTPPLTMQQPPEPRYSY  238 (1312)
Q Consensus       159 ~k~l~l~~~~i~p~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  238 (1312)
                       |+|++++++++|+++++|   ...++++++...-+..+++. .+.++   +++            ++   .  .|.|.|
T Consensus       546 -kslN~~l~~le~~~~lnn---~~~i~~~L~~~~~e~h~~~~-~~~~q---~~~------------~~---~--~~~fa~  600 (1591)
T KOG1831|consen  546 -KSLNVILSELEPSETLNN---IIRIKKQLVLMKLETHQSLE-LEDIQ---QVT------------LG---N--TIAFAY  600 (1591)
T ss_pred             -ccccchHhhcchhhHHhh---HHhHHHHHccCChhhccccc-cCchh---ccc------------cc---C--Ccccee
Confidence             999999999999999998   34567777653322111111 11110   000            00   1  123899


Q ss_pred             cccccccccCCCCceeecccccccccCcchhhHHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHhhcCCCCcchHHHHH
Q psy1277         239 TSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRS  318 (1312)
Q Consensus       239 ~~~~~~~~~~l~~~i~i~~~~~~~~~~p~lk~~v~~Ai~rairEii~pvveRsv~IA~~tT~~lv~KDFa~e~De~~~r~  318 (1312)
                      ++.|+.+..+..+++.+.|       ||+.|++|+.|++++|+|||.||||||+.||++||+.+++||||+|+||++||.
T Consensus       601 ~~~n~~t~~~~i~~l~~~~-------~P~~Kh~~~~Aleqsv~eii~~Vv~rs~~IA~ttTe~lirKDFA~e~~es~l~~  673 (1591)
T KOG1831|consen  601 DARNVSTATEVIKQLDLRP-------HPDIKHRVQEALEQSVVEIIEPVVERSSGIASTTTESLIRKDFALERDESRLRL  673 (1591)
T ss_pred             cccccchhhhhhhhccCCC-------CccHHHHHHHHHHHHHHHHHHHHHHHhhceeehhHHHHHHHHHhcccchhHHHH
Confidence            9999888888888888875       999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhHHHH
Q psy1277         319 AAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDI  398 (1312)
Q Consensus       319 aa~~Mv~~LA~sLAlvTcrepL~~si~~~l~~~l~~~l~~~~~~~~~~~e~~~~~~~~dNl~l~c~~Iekaa~ekA~~~i  398 (1312)
                      ||+.|||.||++||++||||||+++|.++|+..+.+.++     -...+++++..+++||++++|.+|||+|+|||++||
T Consensus       674 Aa~~M~r~la~~lAmiTcreplk~am~~nl~~~~~~~l~-----~~~ai~~a~~t~~~dNv~l~~~~Iek~a~eka~~dI  748 (1591)
T KOG1831|consen  674 AASQMVRELAAGLAMITCREPLKVAMSSNLVLAALSLLS-----LMAAIARAADTLQSDNVELVVKFIEKTAIEKATQDI  748 (1591)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHhhhhH-----HHHHHHHHHHHHHhhchhhHhhhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999987766543     234588899999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHhhhh--cCCCcccccccchhhhhCCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCcchh-hcccCCC
Q psy1277         399 DKHLAGEYERRKHARS--EQRRYCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERD-AALFLPK  475 (1312)
Q Consensus       399 d~~l~~~~~~R~~~r~--~~~~f~D~~~~~~~~~~LPe~Lrlk~~Gl~~~Q~~VYEdF~r~~~~~~~~~~~~-~~~~~~~  475 (1312)
                      |.+|++++..|+.||+  ++.||+|+....|+. .|||++|+++||++|+|++|||+|+|.+||+.+.+++. .+...+.
T Consensus       749 ~~~L~q~~~~Rv~~k~~~~~~~fvD~~~~~~~~-~LP~~vr~~~~~~~~~l~~vYe~F~k~i~~~~~~s~~~~la~~~~~  827 (1591)
T KOG1831|consen  749 DSRLEQDICGRVFHKENPEVMPFVDLLSAAYSC-TLPEVVRLKIGGLTPQLFRVYEEFPKPIPGFLGNSSRKDLAEYITE  827 (1591)
T ss_pred             HHHHHHhhHhheecccCCccccchhhhhhhhhc-cCcHhhhcccCCCCHHHHHHHHHcccccccccccCCCcccccccCC
Confidence            9999999999999998  799999999998764 59999999999999999999999999999988777663 2223333


Q ss_pred             CCCCCCCCCCccccCccchhhhHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHhhhccchhhHHHHHHhhh
Q psy1277         476 PEPPPPGPPVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKLAL  555 (1312)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~l  555 (1312)
                      +..-++  |   ...+.+.....+++...++....+...+.|+ .+.++++.+.+++.+. +++                
T Consensus       828 ~~dlt~--~---~~~s~~~~lv~~ei~~~~~~~a~~~~i~~~~-l~~~a~s~~~~m~~v~-~~~----------------  884 (1591)
T KOG1831|consen  828 SSDLTQ--P---HVISNALDLVVREICGAIVEKACQTAIQTGM-LQFKAQSVEKLMEEVP-ARN----------------  884 (1591)
T ss_pred             Cccccc--h---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhcchhhHHhcc-chh----------------
Confidence            222111  0   0111111222222222222221111111100 1111111111111100 000                


Q ss_pred             hhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHhhhhhhhhhhhhHHHH
Q psy1277         556 FQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQ  635 (1312)
Q Consensus       556 ~q~~p~l~~l~~~aver~i~e~i~~v~Era~kia~~t~e~iv~Kdfal~~de~~m~~aa~~i~r~L~~~~A~itcrd~L~  635 (1312)
                               .+...+.        ..++   .    .+                 |.+-|.|..++     ..+|++   
T Consensus       885 ---------~~~~~~~--------~~~~---~----~a-----------------r~i~hli~~~V-----~~~~~~---  915 (1591)
T KOG1831|consen  885 ---------MVVNLVN--------SLLL---L----VA-----------------RSIEHLISGLV-----SYFMKN---  915 (1591)
T ss_pred             ---------hhHHHHH--------HHHH---H----HH-----------------HHHHHHHHHHH-----HHHHHH---
Confidence                     0000000        0000   0    00                 01111111110     001111   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhhhhhhhHHHHHHHHHHHHHhhhchhhhhhHHHHHhhhccccccccHH
Q psy1277         636 QSIKANLKHLFTTAITVIENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLE  715 (1312)
Q Consensus       636 ~si~~~~~~Lf~~a~~~~~~ll~~~~~~~~~~e~~~~~re~~~~~l~~L~~~~~~~~~~~~keVt~wlv~a~derk~n~~  715 (1312)
                                                     .++....+.++..+++.|...|+++....-+.|+.++..+++++|||++
T Consensus       916 -------------------------------l~~~~~~~~I~~i~m~iL~~ic~~~qk~~~~~vs~a~s~~~~~~e~n~~  964 (1591)
T KOG1831|consen  916 -------------------------------LELDFSTEKIFKIIMEILDNICRFIQKAGVRKVSEAISSSRSSLEYNIE  964 (1591)
T ss_pred             -------------------------------HHHhhcchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhchHHHHhhHH
Confidence                                           1223345678888888888777777666666799999999999999999


Q ss_pred             HHHHHHHhccCCchHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHhcCCCC---hh
Q psy1277         716 AVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQP---PE  792 (1312)
Q Consensus       716 vi~~Lir~~Li~~~elD~~Lak~i~~~~~~~av~Fa~~lv~~~l~~~~~~~~~~~~Df~~tleaL~~~~~~~~~~---~~  792 (1312)
                      .+..|++.+|++..++|.+++++|++|.+..++.|+..+++....++++........|..|-|.+.|+.+.-...   .+
T Consensus       965 ~~~~L~~~~l~~~~~vd~~l~~amDs~~n~~vi~f~iell~~~~~~dnvi~~~~~~~~~~t~E~~~ri~q~v~s~~~~~g 1044 (1591)
T KOG1831|consen  965 KAEHLILSLLLDSGHVDKHLAKAMDSGGNQEVIAFLIELLRIAYGGDNVIADEWKNLFKETKEELFRILQSVESSEDKSG 1044 (1591)
T ss_pred             HHHHHHHHhccChhhHHHHHHHHhccCCChHHHHHHHHHHHHhccCcchhhhhhhhhhhhHHHHHHHHHHHHhcccccch
Confidence            999999999999999999999999999999999999999999999998666666677888999988854431100   00


Q ss_pred             hHHHHHHHHhccCCCCcchhccCcCcccccCCCCccccccCCCCcccccccccccccCCCCCCCCChHHHHHHHHHHHHH
Q psy1277         793 GLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLNAATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVT  872 (1312)
Q Consensus       793 ~l~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~q~~~~~~~~dp~~l~eq~~~lf~EWv~  872 (1312)
                      ......+                    +.-+++...   +  .++    +.     .....+++.++++|++.+|.|||.
T Consensus      1045 ~~~~~~~--------------------~~v~~~~k~---~--s~~----~~-----m~~~~~~~~~lt~K~~~v~~~Wv~ 1090 (1591)
T KOG1831|consen 1045 ECASLCD--------------------YIVEHAIKS---G--SSA----DF-----MFRRMDDKQKLTEKTEIVFLEWVI 1090 (1591)
T ss_pred             hhhhHHH--------------------HHHHhccCC---C--Cch----hH-----HHHhcCcchhhhhHHHHHHHHHHH
Confidence            0000000                    000010000   0  000    00     123557788999999999999999


Q ss_pred             HhcCCCCCCCCchHHHHHHHHHHHcCCccCcchHHHHHHHHHHhhhcc----CCCCCccchh-hchHHHHHHHHHHHhhc
Q psy1277         873 IYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSLVVGV----SPTPTRSKMF-QTLDAYAKLIALLVKHS  947 (1312)
Q Consensus       873 l~~~~~~~~~~e~~~~~FI~qL~~~GILk~de~~~~FfR~~~E~sV~~----~pt~~~~~~f-~~IDA~akLiv~lvk~~  947 (1312)
                      +|+++.   +++...++||+||+++|||++||.+++|||.|+|+||+.    ++..  ..++ ..++++.+....|..|.
T Consensus      1091 L~~~~~---~~~~s~~~fi~ql~~~GVls~dd~ltqFfr~~~el~~~i~~~a~~~~--a~~~i~tv~~~~~~l~~l~~f~ 1165 (1591)
T KOG1831|consen 1091 LLNDSR---KNDESLAAFIQQLNEIGVLSTDDLLTQFFRADLELCVVIFLEASLIT--ALVQICTVYAFICTLEMLDGFV 1165 (1591)
T ss_pred             HHhccc---cchHHHHHHHHHHHHcCcccchHHHHHHHHhhhhhhHHHHHHhcccc--cchhhhhHHHHHHHHHHHHHHh
Confidence            999864   467899999999999999999999999999999999988    3321  2222 46888888888888888


Q ss_pred             CCCCCCCcccHHHHHHHHHHHHHHHHhcchhhhhcCCCCccHHHHHHHHhhhhCCCCcchhhhHHHHHHHHHHHHhhcCC
Q psy1277         948 GSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRP 1027 (1312)
Q Consensus       948 ~~~~~~~~~~k~~~L~kiL~iiv~VL~~Dhe~~~~~FnqrPyfRlFs~LL~El~~~~~~l~~~~~~~l~aFa~~~~~LqP 1027 (1312)
                      +      ..+|.+||+||+++|+||+++||+++|+.|||+||||+|+++|.||..++.+++...+++++||+++||.|||
T Consensus      1166 d------~~tk~dl~~KI~~livgv~akdHs~~~e~f~~~~y~Rlf~~ll~E~~~~~~~le~~~~~i~SaF~~tfhalqp 1239 (1591)
T KOG1831|consen 1166 D------LPTKIDLFNKILNLIVGVFAKDHSERGEYFNQCPYFRLFSMLLPELMTADSVLEPISLDILSAFKNTFHALQP 1239 (1591)
T ss_pred             c------CchHHHHHHHHHHHHHHHHhcchHHhhhhHhhCcHhHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHhCc
Confidence            7      2689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhHHHHHHHhhhhhhhhhhcccchhHHHHHHHHhhhhCCCCCCCchhHHHHHhhhhhhHhhhhhcCCCCCChHH
Q psy1277        1028 SKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPL 1107 (1312)
Q Consensus      1028 ~~~PgFafaWLeLISHR~f~~~~~~~~~~~~~~~~~~~~l~~~~p~~~pgf~~aw~~lishr~F~p~lL~~~p~~~gW~~ 1107 (1312)
                      .++|||+||||+|+|||                                             +|+||||.. +++|||+.
T Consensus      1240 ~~~Pgf~fawL~lishr---------------------------------------------~li~~~L~~-~~~k~~~~ 1273 (1591)
T KOG1831|consen 1240 RRFPGFAFAWLELISHR---------------------------------------------GLIPRMLAE-TNQKGWPL 1273 (1591)
T ss_pred             ccCcccceeeeecccch---------------------------------------------hHHHHHHHh-ccccccHH
Confidence            99999999999999999                                             999999997 69999999


Q ss_pred             HHHHHHHHHHhhhhhccCcCCCchhHHHHHHHHHHHHHHhccchhhHHHhhhhhhccCCCcchhhhhHhhccCCCCCCCC
Q psy1277        1108 YAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLP 1187 (1312)
Q Consensus      1108 ~~~Ll~~ll~Fl~~~l~~~~l~~~~~~~YkgtlRilLvLlHDfPeFL~~~h~~lc~~iP~~ciQLrNlILsA~P~~m~LP 1187 (1312)
                      |.+|+++|||||+||+||.+++++++.+|||||||+|||+||||||||+|||.+||.|||+|+||||+||||||++|++|
T Consensus      1274 ~~~llislfkfL~~ylrn~~~~k~~~~lykgTLrVilvllhDfp~fl~~~hy~~~~~iPp~cvqlrniilsafp~~m~lp 1353 (1591)
T KOG1831|consen 1274 YAQLLISLFKFLAPYLRNYELFKPVQLLYKGTLRVILVLLHDFPEFLCEYHYGLCDTIPPNCVQLRNIILSAFPSNMRLP 1353 (1591)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHcchHHhhcccccchHHHHHhhhhccCCCCcHHHHHHHHHHHhccccCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccchhhhccCCccccchhhccCcCchhHHHHHHhccCCchhHHHHHHHHHhccCCCCcccchhhHHHHHHHH
Q psy1277        1188 DPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYV 1267 (1312)
Q Consensus      1188 DPf~p~Lkvd~l~ei~~~P~i~~~~~~~l~~~~lk~~vD~yL~~~~p~~~l~~l~~~l~~~~~~g~~yn~~LiNAlVLyV 1267 (1312)
                      |||++|||||+|||+..+|+++++++. |.+..+|+++|.|+.+++|++|+..++..++..+++|++||..+|||+|+||
T Consensus      1354 dpf~~~lkve~lpe~~~ap~i~~~~~~-i~~~~~~~dl~a~l~s~~~~t~l~~~~~~~~~~~~~~~~~~~~~~naiVlyv 1432 (1591)
T KOG1831|consen 1354 DPFAVNLKVEMLPEGFYAPRILYSITQ-IMPSNFRKDLDARLKSSSPVTFLSCLPQLLQVIKEPGTRYNNQLINAIVLYV 1432 (1591)
T ss_pred             CccccccchhhhhhhhcCchhcCCHHH-hcccccCCCHHHHhhccccHhHHHHhhHHHHHhcCccccccHHHHHHHHHHH
Confidence            999999999999999999999999998 6666999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCcccCCCchHHHHHHHHhhcCCCcccC
Q psy1277        1268 GTQAILSIRAKSLSPNNKTIAHSAHMDIFLNFAVDLDTGATIR 1310 (1312)
Q Consensus      1268 G~~Ai~~~~~~~~~~~~~~~~~s~~~~i~~~L~~~ld~EgRY~ 1310 (1312)
                      |++||.+++.++..+++.+++||+||+||+||+.+||+||||+
T Consensus      1433 G~~ai~~~~~~~~~~~~~~it~s~~~~i~~nL~~nld~e~ry~ 1475 (1591)
T KOG1831|consen 1433 GIQAIAHLRRKSQNPSTSTITHSAYMDIFQNLIVNLDTEGRYL 1475 (1591)
T ss_pred             HHHHHHHHHhccCCCcccccccCchhhHHHHHHHhcchhhhHH
Confidence            9999999999998888889999999999999999999999997

>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription] Back     alignment and domain information
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human Back     alignment and domain information
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human Back     alignment and domain information
>KOG1831|consensus Back     alignment and domain information
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human Back     alignment and domain information
>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription] Back     alignment and domain information
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human Back     alignment and domain information
>KOG1467|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1312
4gmj_A229 Structure Of Human Not1 Mif4g Domain Co-Crystallize 1e-44
4gml_A235 Crystal Structure Of Human Not1 Mif4g Domain Length 2e-44
4b89_A249 Mif4g Domain Of The Yeast Not1 Length = 249 1e-11
>pdb|4GMJ|A Chain A, Structure Of Human Not1 Mif4g Domain Co-Crystallized With Caf1 Length = 229 Back     alignment and structure 
Iteration: 1

 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/191 (53%), Positives = 125/191 (65%), Gaps = 11/191 (5%)
Query: 1   MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
           MKR SIE NFH LYSNFLD +K P+   MV+ ETYRNIKVLL SDK  ANFSDR+LLKNL
Sbjct: 48  MKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL 107
Query: 61  GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV 120
           GHWLGM+TL +N+PIL  DLD+KSL+ EAY KGQQELLYVVPFVAKV+ES  RS +    
Sbjct: 108 GHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPP 167
Query: 121 EIFLASLVTLVGV--QNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDP 178
             +  +++ ++    Q   L  +L   IE L            +AL   +L P   LKD 
Sbjct: 168 NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLC---------KNLALDINELKPGNLLKDK 218
Query: 179 DNLKFSELQLA 189
           D LK  + QL+
Sbjct: 219 DRLKNLDEQLS 229
>pdb|4GML|A Chain A, Crystal Structure Of Human Not1 Mif4g Domain Length = 235 Back     alignment and structure
>pdb|4B89|A Chain A, Mif4g Domain Of The Yeast Not1 Length = 249 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1312
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 74.9 bits (183), Expect = 1e-13
 Identities = 103/710 (14%), Positives = 195/710 (27%), Gaps = 266/710 (37%)

Query: 594  EQIVKK--DFALDPDEGRMRSAAHHIARNLTAGMAM-ITCRDQLQQSIKANLKHLFTTAI 650
            E++V+K  +  L  +   + S      R  +    M I  RD+L    +   K+      
Sbjct: 76   EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY------ 129

Query: 651  TVIENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRA------FGVQWTNKQITRCLI 704
                       ++        R    +L++ +AL +LR        GV  + K     + 
Sbjct: 130  -----------NVS-------R-LQPYLKLRQALLELRPAKNVLIDGVLGSGKT---WV- 166

Query: 705  ECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFC---MQLLQHYLVE 761
                       A+D                +   M+  + ++ +  C     +L+     
Sbjct: 167  -----------ALDVC----------LSYKVQCKMDFKIFWLNLKNCNSPETVLE----- 200

Query: 762  ERGTAGVTESDMLNTLEVLIR-----IASHHRQPPEGLTALIDMLRANHHDQPMLVERAP 816
                       ML  L   I       + H       + ++   LR        L++  P
Sbjct: 201  -----------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-------RLLKSKP 242

Query: 817  GAQTLNSGLPNFSLNAATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHS 876
                L   L                           L +                     
Sbjct: 243  YENCL---L--------------------------VLLN--------------------- 252

Query: 877  PAGVKDPN--KAFTLFVHQMNCHGILKSDELITRFFRFATSLVVGVSPTPT---RSKMF- 930
               V++     AF L     +C  IL    L TRF +    L    +   +    S    
Sbjct: 253  ---VQNAKAWNAFNL-----SCK-IL----LTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 931  --QTLDAYAK----------------------LIALLVKHSGSGEHAN--SNTKINLLNK 964
              +      K                      +IA  ++     +      N K    +K
Sbjct: 300  PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-----DGLATWDNWKHVNCDK 354

Query: 965  VLGIISGVL--ITDQEARQHEFHQLPYHRIFIMLFLE-LNVPDPVLEAI--------NFQ 1013
            +  II   L  +   E R+       + R+ +  F    ++P  +L  I           
Sbjct: 355  LTTIIESSLNVLEPAEYRKM------FDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 1014 VLSAYCSVLHILRPSKQPGFAYA----WLEIVAHRTFIGRMLVITPHQKVLSAY----CS 1065
            V++       + +  K+     +    +LE+         +     H+ ++  Y      
Sbjct: 407  VVNKLHKYSLVEKQPKE--STISIPSIYLELKVKLENEYAL-----HRSIVDHYNIPKTF 459

Query: 1066 VLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRN 1125
                L P     + Y         + IG  L    H +   L+  + +D F+FL   +R+
Sbjct: 460  DSDDLIPPYLDQYFY---------SHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRH 509

Query: 1126 VELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMR 1185
                         +L  L  L     +F   Y    CD  P    ++ N IL        
Sbjct: 510  ---DSTAWNASGSILNTLQQL-----KF---YKPYICDNDPKY-ERLVNAILD------- 550

Query: 1186 LPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPV 1235
                F P ++ + +          + +  L++ A   +D   + +    V
Sbjct: 551  ----FLPKIEENLI---------CSKYTDLLRIALMAEDEAIFEEAHKQV 587
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1312
4gmj_A229 CCR4-NOT transcription complex subunit 1; mRNA dec 100.0
4b89_A249 General negative regulator of transcription subun; 100.0
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A Back     alignment and structure
Probab=100.00  E-value=1.4e-64  Score=544.04  Aligned_cols=179  Identities=58%  Similarity=0.824  Sum_probs=174.2

Q ss_pred             CccccccccchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccccccchhhHHHhhhhhhhhhhhccCccccccCC
Q psy1277           1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLGHWLGMLTLGRNRPILMVDL   80 (1312)
Q Consensus         1 ~~Ras~EpN~H~lY~~~l~~l~~~~l~~~vl~~T~~~i~~lL~s~k~~~~~~eRs~LKNLG~WLG~iTLarnkPI~~~~l   80 (1312)
                      ++|||+|||||+||++|+++++++.|+++|+++||++|++||+++++.++++||++|||||+|||+|||||||||+|++|
T Consensus        48 ~~Ras~EpN~h~lY~~fl~~l~~~~l~~~vl~~T~~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l  127 (229)
T 4gmj_A           48 MKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDL  127 (229)
T ss_dssp             HHTTTTCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTTTC
T ss_pred             HhhhhcccccHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHccCCCchhccc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHhCCceeeEeehhhHHHhhhccccccCCCCchhHHHHHHHHh--hccCCCCcchhHHHHHhhcccccccc
Q psy1277          81 DLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVEIFLASLVTLVG--VQNTLLPSSLHALIEALVALRRTRDA  158 (1312)
Q Consensus        81 ~~K~LL~eay~~g~~~L~~viPFV~KvLe~~~~SkvF~pPNPW~~~il~lL~--~~~~~lKlnLkFEIEvL~~~~~~~~~  158 (1312)
                      |+|+||+|||++|+++|++||||||||||+|++|+|||||||||||||++|+  |++||||+||||||||||        
T Consensus       128 ~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~iFkPPNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLf--------  199 (229)
T 4gmj_A          128 DVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLC--------  199 (229)
T ss_dssp             CHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCTTTSTTCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH--------
T ss_pred             CHHHHHHHHHHCCCceEEEeehhHHHHHHhcccCCcCCCCChhHHHHHHHHHHHHhCccchhhHHHHHHHHH--------
Confidence            9999999999999889999999999999999999999999999999999999  999999999999999999        


Q ss_pred             cccccccccccccccccCCCcchhhhHHHh
Q psy1277         159 HSAVALIQKDLVPSYYLKDPDNLKFSELQL  188 (1312)
Q Consensus       159 ~k~l~l~~~~i~p~~~l~~~~~~~~i~~~~  188 (1312)
                       |+|+++++||+|+++++++++.+++++++
T Consensus       200 -k~l~~~~~~i~ps~~l~~~~~~~~~~~~l  228 (229)
T 4gmj_A          200 -KNLALDINELKPGNLLKDKDRLKNLDEQL  228 (229)
T ss_dssp             -HHTTCCGGGSCCCSGGGCSTTGGGCCCCC
T ss_pred             -HHcCCChhhcCchhhhhccchhcccCCCC
Confidence             99999999999999999999877776554
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00