Psyllid ID: psy12794

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEccccHHHHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
HHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHccHHHcccEEEEEEEcccccccccHHHHHHHHcHHHcccccEEEEEcEccccEcHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
pywrcyysntdaIIYVvdssdrdrigiSKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALglenlkdrTFQIFKTSakegeglndSMDWLSNALQKHL
Flexible Loop (DISEMBL)
pywrcyysntdaiiyvvdssdrdrIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALglenlkdrTFQIFKTsakegeglndsMDWLSNALQKHL
Low Complexity Region (SEG)
PYWRCYYSNTDAIIYVVDSSDRDRIGISkeellamlkeeelRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL
Disordered region (IsUnstruct)
*YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK************************
Disordered Region (DISOPRED)
PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK**
Disordered Region (DISEMBL)
PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL
Disordered Region (DISPRO)
PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
P25160	180	ADP-ribosylation factor-l	yes	N/A	0.971	0.572	0.825	2e-46
Q20758	180	ADP-ribosylation factor-l	yes	N/A	0.981	0.577	0.653	4e-39
P61212	181	ADP-ribosylation factor-l	yes	N/A	0.990	0.580	0.676	9e-38
P61211	181	ADP-ribosylation factor-l	yes	N/A	0.990	0.580	0.676	9e-38
Q2YDM1	181	ADP-ribosylation factor-l	yes	N/A	0.990	0.580	0.666	2e-37
P40616	181	ADP-ribosylation factor-l	yes	N/A	0.990	0.580	0.666	2e-37
Q96361	182	ADP-ribosylation factor 1	N/A	N/A	0.971	0.565	0.572	2e-30
P40940	182	ADP-ribosylation factor 3	yes	N/A	0.971	0.565	0.563	6e-30
P61210	182	ADP-ribosylation factor 1	N/A	N/A	0.971	0.565	0.533	1e-27
P61209	182	ADP-ribosylation factor 1	no	N/A	0.971	0.565	0.533	1e-27

>sp|P25160|ARL1_DROME ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=2 SV=5

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 94/103 (91%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDAIIYVVDS+DRDRIGISK+ELL ML+EEEL  AILV+LANKQDM  CM+
Sbjct: 75  PYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMT 134

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           VAEVH ALGLENLK+RTFQIFKTSA +GEGL+ +MDWLSN LQ
Sbjct: 135 VAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQ 177

Binds and hydrolyzes GTP. Does not act as an allosteric activator of the cholera toxin catalytic subunit.
Drosophila melanogaster (taxid: 7227)

>sp|Q20758|ARL1_CAEEL ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=3 SV=2

 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 91/104 (87%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYY+NTDAIIYVVDS+DRDR+GIS++EL  ML+E+EL+ A+L +LANKQD+  C++
Sbjct: 75  PYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAGCLT 134

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
             EV++ALGL+ L++RT QIFKTSA +GEGL+ +MDWL+N LQ+
Sbjct: 135 ETEVYKALGLDALRNRTIQIFKTSASKGEGLDPAMDWLANQLQQ 178

GTP-binding protein that may be involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Caenorhabditis elegans (taxid: 6239)

>sp|P61212|ARL1_RAT ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1

 Score =  155 bits (391), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 86/105 (81%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDA+IYVVDS DRDRIGISK EL+AML+EEELR AILV+ ANKQDM+  M+
Sbjct: 76  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 135

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            +E+  ALGL  LKDR +QIFKTSA +G GL+++M+WL   L+  
Sbjct: 136 PSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180

GTP-binding protein that has very low efficiency as allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Can activate phospholipase D with very low efficiency (By similarity). Important for normal function of the Golgi apparatus.

Rattus norvegicus (taxid: 10116)

>sp|P61211|ARL1_MOUSE ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1

 Score =  155 bits (391), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 86/105 (81%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDA+IYVVDS DRDRIGISK EL+AML+EEELR AILV+ ANKQDM+  M+
Sbjct: 76  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 135

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            +E+  ALGL  LKDR +QIFKTSA +G GL+++M+WL   L+  
Sbjct: 136 PSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180

GTP-binding protein that has very low efficiency as allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Can activate phospholipase D with very low efficiency. Important for normal function of the Golgi apparatus.

Mus musculus (taxid: 10090)

>sp|Q2YDM1|ARL1_BOVIN ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1

 Score =  154 bits (388), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/105 (66%), Positives = 86/105 (81%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDA+IYVVDS DRDRIGISK EL+AML+EEELR AILV+ ANKQDM+  M+
Sbjct: 76  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 135

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            +E+  +LGL  LKDR +QIFKTSA +G GL+++M+WL   L+  
Sbjct: 136 PSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180

Does not act as an allosteric activator of the cholera toxin catalytic subunit.

Bos taurus (taxid: 9913)

>sp|P40616|ARL1_HUMAN ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1

 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/105 (66%), Positives = 86/105 (81%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDA+IYVVDS DRDRIGISK EL+AML+EEELR AILV+ ANKQDM+  M+
Sbjct: 76  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 135

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            +E+  +LGL  LKDR +QIFKTSA +G GL+++M+WL   L+  
Sbjct: 136 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180

GTP-binding protein that has very low efficiency as allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Can activate phospholipase D with very low efficiency. Important for normal function of the Golgi apparatus.

Homo sapiens (taxid: 9606)

>sp|Q96361|ARF1_BRARP ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 77/103 (74%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCY+ NT A+IYVVDSSD DRIG++KEE  A+L+EEEL+ A+++I ANKQD+   + 
Sbjct: 76  PYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALD 135

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
            A V  AL L  +K R + IFKT A +GEGL + +DWLSN L+
Sbjct: 136 DAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Brassica rapa subsp. pekinensis (taxid: 51351)

>sp|P40940|ARF3_ARATH ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2

 Score =  129 bits (324), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 77/103 (74%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCY+ NT A+IYVVDSSD DRIG++KEE  A+L+E+EL+ A+++I ANKQD+   + 
Sbjct: 76  PYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALD 135

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
            A V  AL L  +K R + IFKT A +GEGL + +DWLSN L+
Sbjct: 136 DAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 77/103 (74%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DR+RIG ++EEL+ ML E+ELRDA+L+I ANKQD+ N M+
Sbjct: 76  PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMN 135

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
            AE+   LGL +L++R + I  T A  G+GL + +DWLSN L+
Sbjct: 136 AAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Locusta migratoria (taxid: 7004)

>sp|P61209|ARF1_DROME ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=2 SV=2

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 77/103 (74%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DR+RIG ++EEL+ ML E+ELRDA+L+I ANKQD+ N M+
Sbjct: 76  PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMN 135

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
            AE+   LGL +L++R + I  T A  G+GL + +DWLSN L+
Sbjct: 136 AAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
195377842	180	GJ13575 [Drosophila virilis] gi|19415485	0.971	0.572	0.825	4e-45
195127718	180	GI11881 [Drosophila mojavensis] gi|19391	0.971	0.572	0.825	4e-45
125977978	180	GA19306 [Drosophila pseudoobscura pseudo	0.971	0.572	0.825	4e-45
195442886	167	GK24495 [Drosophila willistoni] gi|19416	0.971	0.616	0.825	5e-45
194873185	190	GG15940 [Drosophila erecta] gi|190654939	0.971	0.542	0.825	7e-45
24664933	180	arflike at 72A [Drosophila melanogaster]	0.971	0.572	0.825	7e-45
156542484	180	PREDICTED: ADP-ribosylation factor-like	0.971	0.572	0.815	1e-44
158300992	179	AGAP011730-PA [Anopheles gambiae str. PE	0.971	0.575	0.815	3e-44
332028726	180	ADP-ribosylation factor-like protein 1 [	0.990	0.583	0.790	4e-44
307167250	180	GTP-binding ADP-ribosylation factor-like	0.990	0.583	0.790	4e-44

>gi|195377842|ref|XP_002047696.1| GJ13575 [Drosophila virilis] gi|194154854|gb|EDW70038.1| GJ13575 [Drosophila virilis]

 Score =  185 bits (469), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 95/103 (92%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDAIIYVVDS+DRDRIGISK+ELL ML+EEEL  AILV+LANKQDM+ CM+
Sbjct: 75  PYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMEGCMT 134

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           VAEVH ALGLENLK+RTFQIFKTSA +GEGL+ +MDWLSN LQ
Sbjct: 135 VAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQ 177

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195127718|ref|XP_002008315.1| GI11881 [Drosophila mojavensis] gi|193919924|gb|EDW18791.1| GI11881 [Drosophila mojavensis]

 Score =  184 bits (468), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 95/103 (92%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDAIIYVVDS+DRDRIGISK+ELL ML+EEEL  AILV+LANKQDM+ CM+
Sbjct: 75  PYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMEGCMT 134

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           VAEVH ALGLENLK+RTFQIFKTSA +GEGL+ +MDWLSN LQ
Sbjct: 135 VAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQ 177

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125977978|ref|XP_001353022.1| GA19306 [Drosophila pseudoobscura pseudoobscura] gi|195172257|ref|XP_002026915.1| GL12747 [Drosophila persimilis] gi|54641773|gb|EAL30523.1| GA19306 [Drosophila pseudoobscura pseudoobscura] gi|194112683|gb|EDW34726.1| GL12747 [Drosophila persimilis]

 Score =  184 bits (468), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 95/103 (92%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDAIIYVVDS+DRDRIGISK+ELL ML+EEEL  AILV+LANKQDM+ CM+
Sbjct: 75  PYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMEGCMT 134

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           VAEVH ALGLENLK+RTFQIFKTSA +GEGL+ +MDWLSN LQ
Sbjct: 135 VAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQ 177

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195442886|ref|XP_002069177.1| GK24495 [Drosophila willistoni] gi|194165262|gb|EDW80163.1| GK24495 [Drosophila willistoni]

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 95/103 (92%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDAIIYVVDS+DRDRIGISK+ELL ML+EEEL  AILV+LANKQDM+ CM+
Sbjct: 62  PYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMEGCMT 121

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           VAEVH ALGLENLK+RTFQIFKTSA +GEGL+ +MDWLSN LQ
Sbjct: 122 VAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQ 164

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194873185|ref|XP_001973156.1| GG15940 [Drosophila erecta] gi|190654939|gb|EDV52182.1| GG15940 [Drosophila erecta]

 Score =  184 bits (466), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 94/103 (91%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDAIIYVVDS+DRDRIGISK+ELL ML+EEEL  AILV+LANKQDM  CM+
Sbjct: 85  PYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMT 144

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           VAEVH ALGLENLK+RTFQIFKTSA +GEGL+ +MDWLSN LQ
Sbjct: 145 VAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQ 187

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24664933|ref|NP_524098.2| arflike at 72A [Drosophila melanogaster] gi|194749803|ref|XP_001957326.1| GF24106 [Drosophila ananassae] gi|195019163|ref|XP_001984923.1| GH14778 [Drosophila grimshawi] gi|195327917|ref|XP_002030663.1| GM25571 [Drosophila sechellia] gi|195477864|ref|XP_002086419.1| GE22880 [Drosophila yakuba] gi|195590607|ref|XP_002085036.1| GD14586 [Drosophila simulans] gi|33860128|sp|P25160.5|ARL1_DROME RecName: Full=ADP-ribosylation factor-like protein 1 gi|156919|gb|AAA28365.1| GTP-binding protein [Drosophila melanogaster] gi|23093404|gb|AAF49556.2| arflike at 72A [Drosophila melanogaster] gi|25012198|gb|AAN71215.1| GM20805p [Drosophila melanogaster] gi|190624608|gb|EDV40132.1| GF24106 [Drosophila ananassae] gi|193898405|gb|EDV97271.1| GH14778 [Drosophila grimshawi] gi|194119606|gb|EDW41649.1| GM25571 [Drosophila sechellia] gi|194186209|gb|EDW99820.1| GE22880 [Drosophila yakuba] gi|194197045|gb|EDX10621.1| GD14586 [Drosophila simulans] gi|220950058|gb|ACL87572.1| Arf72A-PA [synthetic construct] gi|220959126|gb|ACL92106.1| Arf72A-PA [synthetic construct]

 Score =  184 bits (466), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 94/103 (91%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDAIIYVVDS+DRDRIGISK+ELL ML+EEEL  AILV+LANKQDM  CM+
Sbjct: 75  PYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMT 134

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           VAEVH ALGLENLK+RTFQIFKTSA +GEGL+ +MDWLSN LQ
Sbjct: 135 VAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQ 177

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542484|ref|XP_001599639.1| PREDICTED: ADP-ribosylation factor-like protein 1-like [Nasonia vitripennis]

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 98/103 (95%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDAIIYVVDS+DRDRIGISK+ELL ML+E+EL++AILV+LANKQDM  C+S
Sbjct: 75  PYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREDELQNAILVVLANKQDMPGCLS 134

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           VAEVH+ALGL+ LK+RTFQIFKTSAK+GEGL+ +MDWLSNALQ
Sbjct: 135 VAEVHQALGLDALKNRTFQIFKTSAKKGEGLDQAMDWLSNALQ 177

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300992|ref|XP_320779.3| AGAP011730-PA [Anopheles gambiae str. PEST] gi|157013426|gb|EAA00052.3| AGAP011730-PA [Anopheles gambiae str. PEST]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 96/103 (93%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDAIIYVVDS+D+DRIGISK+ELL ML+E+EL  AILV+LANKQDM+ CMS
Sbjct: 74  PYWRCYYSNTDAIIYVVDSADKDRIGISKDELLYMLREDELAGAILVVLANKQDMEGCMS 133

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           VAEVH+ALGLE LK+RTFQIFKTSA +GEGL+ +MDWLSNALQ
Sbjct: 134 VAEVHQALGLEALKNRTFQIFKTSATKGEGLDQAMDWLSNALQ 176

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028726|gb|EGI68757.1| ADP-ribosylation factor-like protein 1 [Acromyrmex echinatior]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 83/105 (79%), Positives = 96/105 (91%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDAIIYVVDS+DRDRIGISK+EL+ ML+EEEL+ AILV+LANKQDM  C+S
Sbjct: 75  PYWRCYYSNTDAIIYVVDSADRDRIGISKDELILMLQEEELQGAILVVLANKQDMAGCLS 134

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
           VAEVH+ALGL+ LK+RTFQIFKTSA +GEGL+ +MDWLSNALQ  
Sbjct: 135 VAEVHQALGLDALKNRTFQIFKTSATKGEGLDQAMDWLSNALQSR 179

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167250|gb|EFN60938.1| GTP-binding ADP-ribosylation factor-like protein 1 protein [Camponotus floridanus]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 83/105 (79%), Positives = 96/105 (91%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDAIIYVVDS+DRDRIGISK+EL+ ML+EEEL+ AILV+LANKQDM  C+S
Sbjct: 75  PYWRCYYSNTDAIIYVVDSADRDRIGISKDELILMLQEEELQGAILVVLANKQDMAGCLS 134

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
           VAEVH+ALGL+ LK+RTFQIFKTSA +GEGL+ +MDWLSNALQ  
Sbjct: 135 VAEVHQALGLDALKNRTFQIFKTSATKGEGLDQAMDWLSNALQSR 179

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
FB|FBgn0000115	180	Arl1 "ADP ribosylation factor-	0.971	0.572	0.728	9.2e-36
WB|WBGene00000187	180	arl-1 [Caenorhabditis elegans	0.981	0.577	0.586	1.4e-30
UNIPROTKB|B5XET7	181	ARL1 "ADP-ribosylation factor-	0.971	0.569	0.601	9.1e-29
UNIPROTKB|C1BXG7	181	ARL1 "ADP-ribosylation factor-	0.971	0.569	0.601	9.1e-29
ZFIN|ZDB-GENE-040718-175	181	arl1 "ADP-ribosylation factor-	0.971	0.569	0.592	2.4e-28
UNIPROTKB|C1BKV1	181	ARL1 "ADP-ribosylation factor-	0.971	0.569	0.592	3.9e-28
MGI|MGI:99436	181	Arl1 "ADP-ribosylation factor-	0.971	0.569	0.592	3.9e-28
RGD|621326	181	Arl1 "ADP-ribosylation factor-	0.971	0.569	0.592	3.9e-28
UNIPROTKB|P61212	181	Arl1 "ADP-ribosylation factor-	0.971	0.569	0.592	3.9e-28
UNIPROTKB|Q2YDM1	181	ARL1 "ADP-ribosylation factor-	0.971	0.569	0.582	8.2e-28

FB|FBgn0000115 Arl1 "ADP ribosylation factor-like 1" [Drosophila melanogaster (taxid:7227)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 75/103 (72%), Positives = 82/103 (79%)

Query:     1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
             PYWRCYYSNTDAIIYVVDS+DRDRIGIS               AILV+LANKQDM  CM+
Sbjct:    75 PYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMT 134

Query:    61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
             VAEVH ALGLENLK+RTFQIFKTSA +GEGL+ +MDWLSN LQ
Sbjct:   135 VAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQ 177

GO:0005525 "GTP binding" evidence=ISS;NAS;IDA

GO:0006471 "protein ADP-ribosylation" evidence=ISS

GO:0016197 "endosomal transport" evidence=TAS

GO:0003924 "GTPase activity" evidence=NAS

GO:0048488 "synaptic vesicle endocytosis" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0033227 "dsRNA transport" evidence=IMP

GO:0030334 "regulation of cell migration" evidence=IMP

GO:0070861 "regulation of protein exit from endoplasmic reticulum" evidence=IMP

GO:0090158 "endoplasmic reticulum membrane organization" evidence=IMP

GO:0007030 "Golgi organization" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0060628 "regulation of ER to Golgi vesicle-mediated transport" evidence=IMP

WB|WBGene00000187 arl-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 61/104 (58%), Positives = 80/104 (76%)

Query:     1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
             PYWRCYY+NTDAIIYVVDS+DRDR+GIS             + A+L +LANKQD+  C++
Sbjct:    75 PYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAGCLT 134

Query:    61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
               EV++ALGL+ L++RT QIFKTSA +GEGL+ +MDWL+N LQ+
Sbjct:   135 ETEVYKALGLDALRNRTIQIFKTSASKGEGLDPAMDWLANQLQQ 178

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

UNIPROTKB|B5XET7 ARL1 "ADP-ribosylation factor-like protein 1" [Salmo salar (taxid:8030)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 62/103 (60%), Positives = 76/103 (73%)

Query:     1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
             PYWRCYYSNTDA+IYVVDSSDRDR+GIS             + AILV+ ANKQDM+  M+
Sbjct:    76 PYWRCYYSNTDAVIYVVDSSDRDRMGISKSELVAMLEEEELKKAILVVFANKQDMEQAMT 135

Query:    61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
              AEV  +LGL  LKDR +QIFKTSA +G GL+++M+WL  AL+
Sbjct:   136 PAEVANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVEALK 178

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0007030 "Golgi organization" evidence=ISS

GO:0008047 "enzyme activator activity" evidence=ISS

GO:0009404 "toxin metabolic process" evidence=ISS

GO:0031584 "activation of phospholipase D activity" evidence=ISS

GO:0034067 "protein localization to Golgi apparatus" evidence=ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS

UNIPROTKB|C1BXG7 ARL1 "ADP-ribosylation factor-like protein 1" [Esox lucius (taxid:8010)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 62/103 (60%), Positives = 76/103 (73%)

Query:     1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
             PYWRCYYSNTDA+IYVVDSSDRDR+GIS             + AILV+ ANKQDM+  M+
Sbjct:    76 PYWRCYYSNTDAVIYVVDSSDRDRMGISKSELVAMLEEEELKKAILVVFANKQDMEQAMT 135

Query:    61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
              AEV  +LGL  LKDR +QIFKTSA +G GL+++M+WL  AL+
Sbjct:   136 PAEVANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVEALK 178

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0007030 "Golgi organization" evidence=ISS

GO:0008047 "enzyme activator activity" evidence=ISS

GO:0009404 "toxin metabolic process" evidence=ISS

GO:0031584 "activation of phospholipase D activity" evidence=ISS

GO:0034067 "protein localization to Golgi apparatus" evidence=ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS

ZFIN|ZDB-GENE-040718-175 arl1 "ADP-ribosylation factor-like 1" [Danio rerio (taxid:7955)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 61/103 (59%), Positives = 75/103 (72%)

Query:     1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
             PYWRCYYSNTDA+IYVVDSSDRDR+GIS             + AILV+ ANKQDM+  M+
Sbjct:    76 PYWRCYYSNTDAVIYVVDSSDRDRMGISKSELVAMLEEEELKKAILVVFANKQDMEQAMT 135

Query:    61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
               EV  ALGL  LKDR +QIFKTSA +G GL+++M+WL  +L+
Sbjct:   136 PTEVANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVESLK 178

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009404 "toxin metabolic process" evidence=ISS

GO:0034067 "protein localization to Golgi apparatus" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS

GO:0031584 "activation of phospholipase D activity" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0007030 "Golgi organization" evidence=ISS

GO:0008047 "enzyme activator activity" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|C1BKV1 ARL1 "ADP-ribosylation factor-like protein 1" [Osmerus mordax (taxid:8014)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 61/103 (59%), Positives = 75/103 (72%)

Query:     1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
             PYWRCYYSNTDAIIYVVDSSDRDR+GIS             + AILV+ ANKQDM+  M+
Sbjct:    76 PYWRCYYSNTDAIIYVVDSSDRDRMGISKSELVAMLEEEELKKAILVVFANKQDMEQAMT 135

Query:    61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
               EV  +LGL  LKDR +QIFKTSA +G GL+++M+WL  +L+
Sbjct:   136 PTEVANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVESLK 178

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0007030 "Golgi organization" evidence=ISS

GO:0008047 "enzyme activator activity" evidence=ISS

GO:0009404 "toxin metabolic process" evidence=ISS

GO:0031584 "activation of phospholipase D activity" evidence=ISS

GO:0034067 "protein localization to Golgi apparatus" evidence=ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS

MGI|MGI:99436 Arl1 "ADP-ribosylation factor-like 1" [Mus musculus (taxid:10090)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 61/103 (59%), Positives = 74/103 (71%)

Query:     1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
             PYWRCYYSNTDA+IYVVDS DRDRIGIS             R AILV+ ANKQDM+  M+
Sbjct:    76 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 135

Query:    61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
              +E+  ALGL  LKDR +QIFKTSA +G GL+++M+WL   L+
Sbjct:   136 PSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 178

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0007030 "Golgi organization" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=ISO

GO:0009404 "toxin metabolic process" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0031584 "activation of phospholipase D activity" evidence=ISO

GO:0034067 "protein localization to Golgi apparatus" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048193 "Golgi vesicle transport" evidence=ISO

RGD|621326 Arl1 "ADP-ribosylation factor-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 61/103 (59%), Positives = 74/103 (71%)

Query:     1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
             PYWRCYYSNTDA+IYVVDS DRDRIGIS             R AILV+ ANKQDM+  M+
Sbjct:    76 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 135

Query:    61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
              +E+  ALGL  LKDR +QIFKTSA +G GL+++M+WL   L+
Sbjct:   136 PSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 178

GO:0000139 "Golgi membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;ISO;ISS

GO:0005525 "GTP binding" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=IEA;ISO;ISS

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=ISO;ISS

GO:0007030 "Golgi organization" evidence=IMP

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA;ISO;ISS

GO:0009404 "toxin metabolic process" evidence=IEA;ISO;ISS

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

GO:0031584 "activation of phospholipase D activity" evidence=IEA;ISO;ISS

GO:0034067 "protein localization to Golgi apparatus" evidence=IEA;ISO;ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA;ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0048193 "Golgi vesicle transport" evidence=IMP

UNIPROTKB|P61212 Arl1 "ADP-ribosylation factor-like protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 61/103 (59%), Positives = 74/103 (71%)

Query:     1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
             PYWRCYYSNTDA+IYVVDS DRDRIGIS             R AILV+ ANKQDM+  M+
Sbjct:    76 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 135

Query:    61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
              +E+  ALGL  LKDR +QIFKTSA +G GL+++M+WL   L+
Sbjct:   136 PSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 178

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

UNIPROTKB|Q2YDM1 ARL1 "ADP-ribosylation factor-like protein 1" [Bos taurus (taxid:9913)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 60/103 (58%), Positives = 74/103 (71%)

Query:     1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
             PYWRCYYSNTDA+IYVVDS DRDRIGIS             R AILV+ ANKQDM+  M+
Sbjct:    76 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 135

Query:    61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
              +E+  +LGL  LKDR +QIFKTSA +G GL+++M+WL   L+
Sbjct:   136 PSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 178

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0031584 "activation of phospholipase D activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0008047 "enzyme activator activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS

GO:0034067 "protein localization to Golgi apparatus" evidence=ISS

GO:0009404 "toxin metabolic process" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007030 "Golgi organization" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0000139 "Golgi membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2YDM1	ARL1_BOVIN	No assigned EC number	0.6666	0.9905	0.5801	yes	N/A
P61212	ARL1_RAT	No assigned EC number	0.6761	0.9905	0.5801	yes	N/A
P40616	ARL1_HUMAN	No assigned EC number	0.6666	0.9905	0.5801	yes	N/A
P61211	ARL1_MOUSE	No assigned EC number	0.6761	0.9905	0.5801	yes	N/A
P25160	ARL1_DROME	No assigned EC number	0.8252	0.9716	0.5722	yes	N/A
Q20758	ARL1_CAEEL	No assigned EC number	0.6538	0.9811	0.5777	yes	N/A
P40940	ARF3_ARATH	No assigned EC number	0.5631	0.9716	0.5659	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	106
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	1e-61
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	8e-53
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-45
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	2e-42
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-41
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	5e-39
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	5e-36
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-35
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	1e-34
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	5e-34
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-33
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	1e-32
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-26
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-25
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	2e-23
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	5e-22
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	7e-21
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	1e-18
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	9e-18
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	2e-16
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	3e-14
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	6e-10
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	1e-09
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	5e-08
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	8e-07
cd04163	168	cd04163, Era, E	1e-06
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	2e-05
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-05
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	1e-04
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-04
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	3e-04
cd01894	157	cd01894, EngA1, EngA1 GTPase contains the first do	4e-04
cd00880	161	cd00880, Era_like, E	5e-04
cd01878	204	cd01878, HflX, HflX GTPase family	8e-04
PRK12297	424	PRK12297, obgE, GTPase CgtA; Reviewed	0.002

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score =  184 bits (470), Expect = 1e-61
 Identities = 73/101 (72%), Positives = 85/101 (84%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDAIIYVVDS+DRDR+GISK EL AML+EEEL+DA+L++ ANKQDM   +S
Sbjct: 58  PYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALS 117

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNA 101
            AEV   LGL  LKDRT+QIFKTSA +GEGL++ MDWL N 
Sbjct: 118 EAEVAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLVNT 158

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  162 bits (413), Expect = 8e-53
 Identities = 61/100 (61%), Positives = 75/100 (75%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P WR Y+ NTDA+I+VVDS+DRDRI  +KEEL A+L EEEL DA L+ILANKQD+   MS
Sbjct: 73  PLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMS 132

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
            AE+   LGL  LKDR ++I   SA  GEGL++ +DWLSN
Sbjct: 133 EAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSN 172

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  143 bits (362), Expect = 3e-45
 Identities = 50/100 (50%), Positives = 70/100 (70%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P W+ YY NTD +I+VVDSSDR+RI  +K EL  +L EEEL+ A L+ILANKQD+   ++
Sbjct: 58  PLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALT 117

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
            +E+   LGLE++K R + I   SA  G+GL++ +DWL  
Sbjct: 118 ESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIE 157

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score =  136 bits (344), Expect = 2e-42
 Identities = 55/100 (55%), Positives = 74/100 (74%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DR+RIG ++EEL  ML E+ELRDA+L++ ANKQD+ N MS
Sbjct: 59  PLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS 118

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
            AEV   LGL +L++R + I  T A  G+GL + +DWLSN
Sbjct: 119 AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score =  134 bits (339), Expect = 1e-41
 Identities = 48/98 (48%), Positives = 73/98 (74%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
           W  YY+NTDA+I V+DS+DR+R+ ++KEEL  ML  E+LR A+L++LANKQD+K  M+ A
Sbjct: 76  WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPA 135

Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
           E+  +LGL +++D T+ I    A  GEGL + +DW+++
Sbjct: 136 EISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score =  128 bits (322), Expect = 5e-39
 Identities = 52/104 (50%), Positives = 73/104 (70%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P WR YY NT+ +I+VVDS+DR+RIG ++EEL  ML E+ELRDA+L++ ANKQD+ N MS
Sbjct: 76  PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS 135

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
             EV   LGL +++ R + I    A   +GL + +DWLS  ++K
Sbjct: 136 TTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKK 179

Length = 182

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score =  120 bits (302), Expect = 5e-36
 Identities = 52/104 (50%), Positives = 73/104 (70%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DRDR+  +++EL  ML E+ELRDA+L++ ANKQD+ N M+
Sbjct: 76  PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
            AE+   LGL +L+ R + I  T A  GEGL + +DWLSN +  
Sbjct: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179

Length = 181

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score =  119 bits (299), Expect = 1e-35
 Identities = 52/103 (50%), Positives = 74/103 (71%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P WR YY+NT  +I+VVDS+DRDRI  ++EEL  ML E+ELRDA++++ ANKQD+ + M 
Sbjct: 72  PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK 131

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
            AE+   LGL +++DR + I  T A  G+GL + + WLSN L+
Sbjct: 132 AAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNLK 174

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score =  116 bits (293), Expect = 1e-34
 Identities = 44/98 (44%), Positives = 66/98 (67%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWR Y+ NTD +IYV+DS+DR R   + +EL+ +L+EE+L    +++ ANKQD+     
Sbjct: 74  PYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLTAAP 133

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
             EV  AL L +++DR++ I   SAK GEGL + M+W+
Sbjct: 134 AEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWV 171

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score =  115 bits (289), Expect = 5e-34
 Identities = 47/100 (47%), Positives = 64/100 (64%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
            YWR Y+ +TDA+I+VVDSSDR R+   K EL  +L EE L  A L+I ANKQD+   +S
Sbjct: 73  SYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGALS 132

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
             E+   L L+++K   ++IF  SA  GE L D +DWL +
Sbjct: 133 PEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLVD 172

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score =  112 bits (283), Expect = 3e-33
 Identities = 42/100 (42%), Positives = 68/100 (68%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P WR YY+ T  +I+VVDS+DRDRI  +++EL  ++ + E+RDA+L++ ANKQD+ + M 
Sbjct: 68  PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK 127

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
             E+   LGL  ++DR + +  + A  G+GL + + WLS+
Sbjct: 128 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score =  111 bits (279), Expect = 1e-32
 Identities = 39/100 (39%), Positives = 64/100 (64%), Gaps = 2/100 (2%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL--RDAILVILANKQDMKNCMS 60
           W  YY N   II+V+DSSDR R+ ++K+EL  +L   ++  R   ++  ANK D+ + ++
Sbjct: 62  WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
             ++ + L LEN+KD+ + IF +SA  GEGL++ +DWL  
Sbjct: 122 AVKITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQA 161

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 95.5 bits (238), Expect = 2e-26
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 2/99 (2%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
           W  YY+ +  +IYV+DS+DR+R   SK     ++  E L    L++LANKQD+ + +SVA
Sbjct: 68  WDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLPDALSVA 127

Query: 63  EVHRALG--LENLKDRTFQIFKTSAKEGEGLNDSMDWLS 99
           E+       +  +  R   +   SA EGEG+ + ++WL 
Sbjct: 128 EIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLV 166

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 93.2 bits (231), Expect = 2e-25
 Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P W+ YY NT A+++V+DSS RDR+  +  EL  +L E+ELRDA+L+I ANKQD+   +S
Sbjct: 58  PLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALS 117

Query: 61  VAEVHRALGLENL-KDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
           V E+   L L  L   R++ I    A+ G GL + +DWLS  L
Sbjct: 118 VEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 87.5 bits (217), Expect = 2e-23
 Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 1/94 (1%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
             W+CY  NTD ++YVVDSSD  R+  S++EL  +LK E ++   +V+LANKQD+   ++
Sbjct: 59  TVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT 118

Query: 61  VAEVHRALGLENL-KDRTFQIFKTSAKEGEGLND 93
             E+ R   L+    DR + +   SA  GEGL +
Sbjct: 119 AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAE 152

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 83.9 bits (208), Expect = 5e-22
 Identities = 33/98 (33%), Positives = 58/98 (59%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
             W  Y    +AI+YVVD++DR+++ ++K EL  +L++  L    L++L NK D+   +S
Sbjct: 59  SMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS 118

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
           V E+   + L+++ DR    +  SAKE   ++  +DWL
Sbjct: 119 VDELIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWL 156

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 81.9 bits (203), Expect = 7e-21
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 12/109 (11%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
           W+ Y+   D I+++VD++D +R   SKEEL ++L +EEL +  ++IL NK D    +S  
Sbjct: 80  WKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDKPGAVSEE 139

Query: 63  EVHRALGLENL------------KDRTFQIFKTSAKEGEGLNDSMDWLS 99
           E+  ALGL                 R  ++F  S  + +G  +   WLS
Sbjct: 140 ELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGEGFRWLS 188

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 75.6 bits (186), Expect = 1e-18
 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 1/105 (0%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P W+ Y   TD I++VVDS D +R+  +K EL  + K  E +   +++LANKQD+ N + 
Sbjct: 67  PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPNALP 126

Query: 61  VAEVHRALGLENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQK 104
           V+EV + L L  L   T + +    A  GEGL + ++ L   + K
Sbjct: 127 VSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMILK 171

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 73.3 bits (180), Expect = 9e-18
 Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 3/85 (3%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
           YW+ Y S +  +I+VVDS+D +R+ ++++EL  +L+     D  LV+LANKQD+    SV
Sbjct: 60  YWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPP--DLPLVVLANKQDLPAARSV 117

Query: 62  AEVHRALGLENL-KDRTFQIFKTSA 85
            E+H+ L LE + + R + +  TS 
Sbjct: 118 QEIHKELELEPIARGRRWILQGTSL 142

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score = 70.3 bits (172), Expect = 2e-16
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
           W+ Y+   + I+Y+VD+ D++R   SK EL A+L +EEL     +IL NK D     S  
Sbjct: 78  WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASED 137

Query: 63  EVHRALGLENLKD-------RTFQIFKTSAKEGEGLNDSMDWLS 99
           E+  ALGL N          R  ++F  S     G  +   WLS
Sbjct: 138 ELRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGYGEGFKWLS 181

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 64.0 bits (156), Expect = 3e-14
 Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 9/108 (8%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
           W  YY+    +++VVDSSD DR+   KE L  +L+   +    +++LANKQD KN +  A
Sbjct: 60  WVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGA 119

Query: 63  EVHRALGLENLKDRT---FQIFKTSAKEGEG------LNDSMDWLSNA 101
           +V   L LE L +       I   SA EG G      + + + WL  A
Sbjct: 120 DVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLAA 167

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 52.8 bits (127), Expect = 6e-10
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 6   YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVH 65
                D I+ VVDS+DR+     ++  L +L+        ++++ NK D+     V E+ 
Sbjct: 72  LLRGADLILLVVDSTDRESE---EDAKLLILRRLRKEGIPIILVGNKIDLLEEREVEELL 128

Query: 66  RALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
           R   L  +      +F+ SAK GEG+++  + L
Sbjct: 129 RLEELAKILG--VPVFEVSAKTGEGVDELFEKL 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
           W          I +VDSS      I+      +          +V+  NKQD+ + +   
Sbjct: 85  WEILSRGAVGAIVLVDSSR----PITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPE 140

Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLS 99
           ++  AL LE L   +  + +  A EGEG  D +D L 
Sbjct: 141 KIREALKLELL---SVPVIEIDATEGEGARDQLDVLL 174

Length = 187

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 48.4 bits (115), Expect = 5e-08
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57
                YY   + I+ V DS+ R+      EE L  L+E    D  ++++ NK D+ +
Sbjct: 69  SLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125

Length = 219

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 44.1 bits (105), Expect = 8e-07
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 6   YYSNTDAIIYVVDSSDRD---RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
           YY + D  I V D +D D   ++    +EL  M       +  LVI+ NK D++    V+
Sbjct: 69  YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKIDLERQRVVS 124

Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           +   +   E  K    + F+TSAK G+G+ +    L+  + 
Sbjct: 125 K---SEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206726 cd04163, Era, E

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 11  DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGL 70
           D +++VVD+S+    G   E +L +LK+ +    ILV+  NK D+               
Sbjct: 84  DLVLFVVDASEWIGEGD--EFILELLKKSKTP-VILVL--NKIDLVKDKEDLLPLLE--- 135

Query: 71  ENLKDRTFQ-IFKTSAKEGEGLNDSMDWLSNAL 102
           +  +   F  IF  SA +GE +++ ++++   L
Sbjct: 136 KLKELHPFAEIFPISALKGENVDELLEYIVEYL 168

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 11  DAIIYVVDSSDRDRIGISKEELLAMLKE-EELRDAILVILANKQDMKNCMSVAEVHRALG 69
            A+++ +D S+    G S EE L++ KE + L +  ++++ NK D+       E   +  
Sbjct: 81  AAVLFFIDPSET--CGYSIEEQLSLFKEIKPLFNKPVIVVLNKIDLLT-----EEDLSEI 133

Query: 70  LENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
            + L+    ++ K S    EG+++  +     L
Sbjct: 134 EKELEKEGEEVIKISTLTEEGVDELKNKACELL 166

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 40.5 bits (96), Expect = 2e-05
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 6   YYSNTDAIIYVVDSSDRDRIGISKEEL---LAMLKEEELRDAILVILANKQDMKNCMSVA 62
           YY      I V D ++R+    S E L   L  LKE    +  ++++ NK D+++     
Sbjct: 69  YYRGAHGAILVYDVTNRE----SFENLDKWLNELKEYAPPNIPIILVGNKSDLEDER--- 121

Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLND 93
           +V      +  K+     F+TSAK GE +++
Sbjct: 122 QVSTEEAQQFAKENGLLFFETSAKTGENVDE 152

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 16/96 (16%)

Query: 10  TDAIIYVVDSSDRDRIGISK--EELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRA 67
            D I++VVD     R GI+   EE+  +L+  + +  ILV   NK D      +A    +
Sbjct: 84  ADVILFVVDG----REGITPADEEIAKILRRSK-KPVILV--VNKIDNLKAEELAYEFYS 136

Query: 68  LGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           LG         +    SA+ G G+ D +D +   L 
Sbjct: 137 LGFG-------EPVPISAEHGRGIGDLLDAVLELLP 165

Length = 444

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 13/100 (13%)

Query: 6   YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE-----ELRDAILVILANKQD--MKNC 58
           +Y +T  ++ V D +DR     + +  L  +K+E      + + ++V+ ANK D      
Sbjct: 69  FYKDTQGVLLVYDVTDRQSFE-ALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA 127

Query: 59  MSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
           +S  E  R         + F+ F+TSA  GEG+N+    L
Sbjct: 128 VSEDE-GRLWAES----KGFKYFETSACTGEGVNEMFQTL 162

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 18/95 (18%)

Query: 11  DAIIYVVDSSDRDRIGISK--EELLAMLKEEELRDAILVILANKQD-MKNCMSVAEVHRA 67
           D I++VVD     R G++   EE+   L++   +  ILV  ANK D  K     AE +  
Sbjct: 80  DVILFVVDG----REGLTPEDEEIAKWLRKSG-KPVILV--ANKIDGKKEDAVAAEFYS- 131

Query: 68  LGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
           LG         +    SA+ G G+ D +D +   L
Sbjct: 132 LGFG-------EPIPISAEHGRGIGDLLDAILELL 159

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA

 Score = 37.0 bits (87), Expect = 4e-04
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 18/95 (18%)

Query: 11  DAIIYVVDSSDRDRIGISK--EELLAMLKEEELRDAILVILANKQD-MKNCMSVAEVHRA 67
           D I++VVD     R G++   EE+   L++ + +  ILV   NK D +K     AE +  
Sbjct: 78  DVILFVVDG----REGLTPADEEIAKYLRKSK-KPVILV--VNKIDNIKEEEEAAEFYS- 129

Query: 68  LGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
           LG              SA+ G G+ D +D +   L
Sbjct: 130 LGFGE-------PIPISAEHGRGIGDLLDAILELL 157

This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 10  TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG 69
            D ++ VVDS     +   +EE    L  E  +  +LV+  NK D+            L 
Sbjct: 77  ADLVLLVVDSD----LTPVEEEAKLGLLRERGKPVLLVL--NKIDLVP----ESEEEELL 126

Query: 70  LENLKDRTFQ--IFKTSAKEGEGLND 93
            E   +      +   SA  GEG+++
Sbjct: 127 RERKLELLPDLPVIAVSALPGEGIDE 152

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206666 cd01878, HflX, HflX GTPase family

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 11  DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGL 70
           D +++VVD+SD DR     E +  +LKE    D  ++++ NK D+ +     E       
Sbjct: 122 DLLLHVVDASDPDREEQ-IETVEEVLKELGADDIPIILVLNKIDLLD----DEELEERLR 176

Query: 71  ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
               D  F     SAK GEGL+   + +   L
Sbjct: 177 AGRPDAVF----ISAKTGEGLDLLKEAIEELL 204

HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204

>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 21/101 (20%)

Query: 13  IIYVVD---SSDRDRIGISKEELLAMLKEEELRDAIL-----VILANKQDMKNCMSVAEV 64
           I++V+D   S  RD I    E+   + KE +L +  L     +++ANK D+      AE 
Sbjct: 240 IVHVIDMSGSEGRDPI----EDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEE 291

Query: 65  HRALGLENLKDRTF-QIFKTSAKEGEGLNDSMDWLSNALQK 104
           +    LE  K++   ++F  SA  G+GL++ +  ++  L++
Sbjct: 292 N----LEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEE 328

Length = 424

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PLN00223	181	ADP-ribosylation factor; Provisional	99.91
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.89
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.89
KOG0070|consensus	181		99.89
PTZ00133	182	ADP-ribosylation factor; Provisional	99.89
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.89
KOG0073|consensus	185		99.88
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.88
KOG0084|consensus	205		99.87
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.87
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.87
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.86
KOG0071|consensus	180		99.86
KOG0072|consensus	182		99.86
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.86
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.85
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.85
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.84
KOG0075|consensus	186		99.84
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.84
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.84
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.84
PTZ00099	176	rab6; Provisional	99.84
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.83
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.83
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.83
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.83
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.83
KOG0092|consensus	200		99.83
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.82
KOG0078|consensus	207		99.82
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.82
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.81
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.81
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.81
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.81
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.81
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.81
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.8
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.8
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.8
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.8
KOG0094|consensus	221		99.8
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.8
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.8
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.79
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.79
PTZ00369	189	Ras-like protein; Provisional	99.79
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.79
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.79
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.79
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.79
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.78
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.78
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.78
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.78
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.78
KOG0076|consensus	197		99.78
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.78
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.78
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.78
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.78
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.77
KOG0093|consensus	193		99.77
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.77
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.77
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.77
KOG0098|consensus	216		99.77
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.76
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.76
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.76
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.76
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.76
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.76
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.75
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.75
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.75
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.75
KOG0394|consensus	210		99.75
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.75
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.75
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.74
KOG0088|consensus	218		99.74
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.74
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.74
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.74
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.74
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.74
PLN03108	210	Rab family protein; Provisional	99.73
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.73
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.73
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.73
KOG0080|consensus	209		99.73
KOG0074|consensus	185		99.73
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.72
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.72
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.72
PLN03110	216	Rab GTPase; Provisional	99.72
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.72
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.72
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.72
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.72
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.71
KOG0091|consensus	213		99.71
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.71
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.71
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.71
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.71
KOG0087|consensus	222		99.71
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.7
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.7
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.7
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.7
KOG0395|consensus	196		99.7
KOG0079|consensus	198		99.69
PLN03118	211	Rab family protein; Provisional	99.69
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.68
KOG0081|consensus	219		99.67
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.67
KOG0086|consensus	214		99.66
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.65
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.65
KOG0083|consensus	192		99.64
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.64
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.63
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.63
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.63
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.59
KOG0095|consensus	213		99.59
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.59
KOG0097|consensus	215		99.58
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.57
PRK12299	335	obgE GTPase CgtA; Reviewed	99.57
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.57
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.53
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.52
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.51
PRK03003	472	GTP-binding protein Der; Reviewed	99.49
KOG0077|consensus	193		99.48
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.47
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.46
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.46
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.45
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.45
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.44
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.44
cd00881	189	GTP_translation_factor GTP translation factor fami	99.44
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.43
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.43
PRK03003	472	GTP-binding protein Der; Reviewed	99.43
PRK12296	500	obgE GTPase CgtA; Reviewed	99.41
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.41
KOG0393|consensus	198		99.4
PRK15494	339	era GTPase Era; Provisional	99.4
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.39
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.39
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.38
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.38
PRK12297	424	obgE GTPase CgtA; Reviewed	99.37
PRK00093	435	GTP-binding protein Der; Reviewed	99.36
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.36
PRK04213	201	GTP-binding protein; Provisional	99.35
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.35
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.34
PRK11058	426	GTPase HflX; Provisional	99.34
PRK12289	352	GTPase RsgA; Reviewed	99.34
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.32
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.32
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.31
KOG3883|consensus	198		99.31
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.29
KOG4252|consensus	246		99.29
PRK00089	292	era GTPase Era; Reviewed	99.28
PRK12298	390	obgE GTPase CgtA; Reviewed	99.27
PRK00098	298	GTPase RsgA; Reviewed	99.27
COG2229	187	Predicted GTPase [General function prediction only	99.27
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.27
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.26
COG1100	219	GTPase SAR1 and related small G proteins [General	99.26
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.25
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.25
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.25
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.25
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.24
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.24
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.2
PLN00023	334	GTP-binding protein; Provisional	99.2
PRK12288	347	GTPase RsgA; Reviewed	99.19
KOG1489|consensus	366		99.18
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.18
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.18
PRK05433	600	GTP-binding protein LepA; Provisional	99.18
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.17
COG2262	411	HflX GTPases [General function prediction only]	99.15
CHL00189	742	infB translation initiation factor 2; Provisional	99.13
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.12
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.12
PRK00093	435	GTP-binding protein Der; Reviewed	99.12
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.1
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.08
COG1159	298	Era GTPase [General function prediction only]	99.07
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.07
KOG4423|consensus	229		99.07
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.06
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.06
PRK13768	253	GTPase; Provisional	99.06
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.06
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.05
PRK05306	787	infB translation initiation factor IF-2; Validated	99.05
KOG0096|consensus	216		99.03
COG1160	444	Predicted GTPases [General function prediction onl	99.03
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.03
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.02
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.01
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.99
COG1160	444	Predicted GTPases [General function prediction onl	98.99
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.98
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.97
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.94
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.94
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.93
PRK09866	741	hypothetical protein; Provisional	98.93
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.93
COG0536	369	Obg Predicted GTPase [General function prediction	98.93
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.92
KOG0462|consensus	650		98.91
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	98.88
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.88
KOG0090|consensus	238		98.86
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.86
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.86
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.85
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.85
COG0486	454	ThdF Predicted GTPase [General function prediction	98.85
PRK04004	586	translation initiation factor IF-2; Validated	98.84
PRK10218	607	GTP-binding protein; Provisional	98.83
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.82
PRK12317	425	elongation factor 1-alpha; Reviewed	98.81
COG0218	200	Predicted GTPase [General function prediction only	98.77
PRK14845	1049	translation initiation factor IF-2; Provisional	98.77
PRK01889	356	GTPase RsgA; Reviewed	98.76
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.76
KOG1707|consensus	625		98.75
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.72
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.68
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.65
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.64
KOG1145|consensus	683		98.61
PRK13796	365	GTPase YqeH; Provisional	98.61
KOG1673|consensus	205		98.57
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.54
PRK12736	394	elongation factor Tu; Reviewed	98.52
KOG1423|consensus	379		98.51
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.5
KOG0082|consensus	354		98.49
PRK13351	687	elongation factor G; Reviewed	98.43
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.43
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.41
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.4
PRK12735	396	elongation factor Tu; Reviewed	98.36
PRK12740	668	elongation factor G; Reviewed	98.35
PLN00043	447	elongation factor 1-alpha; Provisional	98.32
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.32
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.31
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.3
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.29
COG1163	365	DRG Predicted GTPase [General function prediction	98.28
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.27
PRK00049	396	elongation factor Tu; Reviewed	98.26
COG1084	346	Predicted GTPase [General function prediction only	98.26
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.26
CHL00071	409	tufA elongation factor Tu	98.25
COG1162	301	Predicted GTPases [General function prediction onl	98.24
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.2
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.18
PTZ00141	446	elongation factor 1- alpha; Provisional	98.16
KOG1424|consensus	562		98.16
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.1
KOG1144|consensus	1064		98.09
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.08
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.08
PRK12739	691	elongation factor G; Reviewed	98.08
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.07
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.06
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.05
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.03
PLN03127	447	Elongation factor Tu; Provisional	98.03
KOG1532|consensus	366		98.03
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.0
KOG1490|consensus	620		98.0
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.95
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.94
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.9
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	97.89
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.87
PRK00007	693	elongation factor G; Reviewed	97.86
PLN03126	478	Elongation factor Tu; Provisional	97.82
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	97.77
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.77
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.74
COG1161	322	Predicted GTPases [General function prediction onl	97.61
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.6
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.6
KOG1707|consensus	625		97.59
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.58
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	97.55
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	97.46
KOG1191|consensus	531		97.37
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.36
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	97.35
KOG2423|consensus	572		97.29
KOG0458|consensus	603		97.25
KOG2484|consensus	435		97.04
KOG0410|consensus	410		97.03
KOG0705|consensus	749		96.97
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.96
KOG0461|consensus	522		96.78
KOG0085|consensus	359		96.7
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	96.61
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	96.59
KOG0099|consensus	379		96.56
PRK09602	396	translation-associated GTPase; Reviewed	96.48
COG5258	527	GTPBP1 GTPase [General function prediction only]	96.42
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	96.38
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	96.27
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	96.25
PTZ00416	836	elongation factor 2; Provisional	96.12
KOG0466|consensus	466		96.09
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	96.07
COG0050	394	TufB GTPases - translation elongation factors [Tra	96.06
PLN00116	843	translation elongation factor EF-2 subunit; Provis	95.72
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	95.5
KOG3905|consensus	473		95.34
KOG0468|consensus	971		95.33
KOG0447|consensus	980		95.21
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	95.03
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	94.84
PRK07560	731	elongation factor EF-2; Reviewed	94.8
KOG1143|consensus	591		94.78
KOG2486|consensus	320		94.68
COG0523	323	Putative GTPases (G3E family) [General function pr	94.56
KOG2485|consensus	335		94.49
KOG0460|consensus	449		94.48
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	94.33
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	93.86
KOG1954|consensus	532		93.86
KOG0463|consensus	641		93.62
KOG3886|consensus	295		93.24
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	92.89
KOG0448|consensus	749		92.41
COG3596	296	Predicted GTPase [General function prediction only	92.32
cd03112	158	CobW_like The function of this protein family is u	91.37
KOG1487|consensus	358		91.15
COG1149	284	MinD superfamily P-loop ATPase containing an inser	91.02
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	90.57
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	89.83
cd03110	179	Fer4_NifH_child This protein family's function is	89.39
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	89.11
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	88.8
COG0012	372	Predicted GTPase, probable translation factor [Tra	88.14
PTZ00258	390	GTP-binding protein; Provisional	87.77
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	87.54
PF11288	207	DUF3089: Protein of unknown function (DUF3089); In	85.91
PRK14974	336	cell division protein FtsY; Provisional	85.78
KOG0465|consensus	721		85.72
KOG1486|consensus	364		85.57
KOG0459|consensus	501		85.05
PF08438	109	MMR_HSR1_C: GTPase of unknown function C-terminal;	84.99
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	81.77
KOG0467|consensus	887		81.31
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	81.13
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	80.83
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	80.22

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.91  E-value=2.2e-23  Score=122.88  Aligned_cols=106  Identities=49%  Similarity=0.876  Sum_probs=89.0

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++|.+||+++|++|+|+|++++.++.+...++..++......+.|+++++||+|++......++.+.++........+.+
T Consensus        76 ~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~  155 (181)
T PLN00223         76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI  155 (181)
T ss_pred             HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEE
Confidence            36999999999999999999999999888888887765445679999999999998776677777777654444456678


Q ss_pred             EEccccCCCChHHHHHHHHHHHhhcC
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQKHL  106 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~~~  106 (106)
                      +++||++|+|+.++|+||.+.+.+++
T Consensus       156 ~~~Sa~~g~gv~e~~~~l~~~~~~~~  181 (181)
T PLN00223        156 QSTCATSGEGLYEGLDWLSNNIANKA  181 (181)
T ss_pred             EeccCCCCCCHHHHHHHHHHHHhhcC
Confidence            89999999999999999999987763

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.89  E-value=4.4e-22  Score=116.85  Aligned_cols=102  Identities=47%  Similarity=0.875  Sum_probs=91.9

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcC-CCceE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLK-DRTFQ   79 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~   79 (106)
                      ++|++||.++|++|||+|.+++..+.+....+.+++.+....++|+++++||.|+++.....++.+.+....+. ...+.
T Consensus        73 ~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~  152 (175)
T PF00025_consen   73 PLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWS  152 (175)
T ss_dssp             GGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEE
T ss_pred             ccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceE
Confidence            47999999999999999999998999999999999988777889999999999998888888888888766554 67889


Q ss_pred             EEEccccCCCChHHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++.|||.+|+|+.+.++||.+++
T Consensus       153 v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  153 VFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             EEeeeccCCcCHHHHHHHHHhcC
Confidence            99999999999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.89  E-value=4.3e-22  Score=116.83  Aligned_cols=102  Identities=50%  Similarity=0.906  Sum_probs=85.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|.+|++++|++++|+|++++.++++...++...++.....+.|+++++||+|+.+.....++.+.++........+.++
T Consensus        73 ~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  152 (175)
T smart00177       73 LWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQ  152 (175)
T ss_pred             HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEE
Confidence            68999999999999999999999999988888877654445789999999999976656667777776554445567788


Q ss_pred             EccccCCCChHHHHHHHHHHHh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++||++|.|+.++|+||.+.+.
T Consensus       153 ~~Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      153 PTCATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             EeeCCCCCCHHHHHHHHHHHhc
Confidence            9999999999999999988753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG0070|consensus

Probab=99.89  E-value=5.2e-22  Score=114.54  Aligned_cols=105  Identities=51%  Similarity=0.866  Sum_probs=98.5

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      |+|++||++++++|||+|.+++.++.+....+..++.+..+.+.|+++.+||.|+++..+..++.+.++...+....+.+
T Consensus        76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~i  155 (181)
T KOG0070|consen   76 PLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHI  155 (181)
T ss_pred             cchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEE
Confidence            68999999999999999999999999999999999999888899999999999999988899999999988878889999


Q ss_pred             EEccccCCCChHHHHHHHHHHHhhc
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ..|+|.+|+|+.+.++|+.+.+.++
T Consensus       156 q~~~a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  156 QSTCAISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             eeccccccccHHHHHHHHHHHHhcc
Confidence            9999999999999999999988754

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.89  E-value=6.6e-22  Score=116.72  Aligned_cols=105  Identities=49%  Similarity=0.863  Sum_probs=87.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|+.|++++|++|+|+|++++.++.+...++.+.+......++|+++++||.|+++.....++.+.++........+.++
T Consensus        77 ~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~  156 (182)
T PTZ00133         77 LWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQ  156 (182)
T ss_pred             HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEE
Confidence            68999999999999999999999998888888776654445789999999999976656667777776544445567788


Q ss_pred             EccccCCCChHHHHHHHHHHHhhcC
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQKHL  106 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~~~  106 (106)
                      ++||++|.|++++|++|.+.+.+++
T Consensus       157 ~~Sa~tg~gv~e~~~~l~~~i~~~~  181 (182)
T PTZ00133        157 GCCATTAQGLYEGLDWLSANIKKSM  181 (182)
T ss_pred             eeeCCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999887653

>cd04149 Arf6 Arf6 subfamily

Probab=99.89  E-value=4.4e-22  Score=116.11  Aligned_cols=99  Identities=41%  Similarity=0.845  Sum_probs=82.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|+.||+++|++++|+|++++.++.+...++.+.+......+.|+++++||+|+.+.....++.+.++........+.++
T Consensus        69 ~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  148 (168)
T cd04149          69 LWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ  148 (168)
T ss_pred             HHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEE
Confidence            68899999999999999999989999888888887664445789999999999876556677777765443344557899


Q ss_pred             EccccCCCChHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~  100 (106)
                      ++||++|.|++++|+||.+
T Consensus       149 ~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         149 PSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             EeeCCCCCChHHHHHHHhc
Confidence            9999999999999999875

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG0073|consensus

Probab=99.88  E-value=3.7e-22  Score=113.17  Aligned_cols=105  Identities=45%  Similarity=0.761  Sum_probs=94.6

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc-CCCceE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL-KDRTFQ   79 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~   79 (106)
                      ++|++||..+|++|||+|.+++.++++....+.+++.+..+.+.|+++++||.|++++...+.+...++...+ ++..++
T Consensus        75 ~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~  154 (185)
T KOG0073|consen   75 SYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWR  154 (185)
T ss_pred             HHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCce
Confidence            5799999999999999999999999999999999998877888999999999999988888888877776655 677899


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      .+.|||.+|+++.+.++||...+..+
T Consensus       155 l~~cs~~tge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  155 LVKCSAVTGEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             EEEEeccccccHHHHHHHHHHHHHHH
Confidence            99999999999999999999887654

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.88  E-value=7.1e-22  Score=114.31  Aligned_cols=99  Identities=55%  Similarity=0.945  Sum_probs=80.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|+.||+++|++++|+|.+++.++++...++.+.+......+.|+++++||+|+.......++.+.++......+.+.++
T Consensus        60 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  139 (159)
T cd04150          60 LWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQ  139 (159)
T ss_pred             HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEE
Confidence            68999999999999999999999999888888777654445689999999999976545556666665444444567889


Q ss_pred             EccccCCCChHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~  100 (106)
                      ++||++|.|++++|++|.+
T Consensus       140 ~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         140 ATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             EeeCCCCCCHHHHHHHHhc
Confidence            9999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG0084|consensus

Probab=99.87  E-value=1.2e-21  Score=114.04  Aligned_cols=98  Identities=19%  Similarity=0.297  Sum_probs=79.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +..+||++|||+|+|||+++..||..+..|+.+.-+.. ..++|.++||||+|+.++  ...++..+...     ..+++
T Consensus        74 it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~-----~~~~~  147 (205)
T KOG0084|consen   74 ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFAD-----ELGIP  147 (205)
T ss_pred             hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHHH-----hcCCc
Confidence            56789999999999999999999999999998876553 356899999999999764  23344444433     33455


Q ss_pred             -EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 -IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 -~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                       ++++||+++.||++.|..++..++.+
T Consensus       148 ~f~ETSAK~~~NVe~~F~~la~~lk~~  174 (205)
T KOG0084|consen  148 IFLETSAKDSTNVEDAFLTLAKELKQR  174 (205)
T ss_pred             ceeecccCCccCHHHHHHHHHHHHHHh
Confidence             99999999999999999999888754

>cd04121 Rab40 Rab40 subfamily

Probab=99.87  E-value=3.6e-21  Score=114.16  Aligned_cols=96  Identities=13%  Similarity=0.151  Sum_probs=78.8

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN--CMSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|+.|++++|++++|||++++.+|+.+..|+.++....  .+.|+++|+||.|+..  .....+..+...     ..+++
T Consensus        71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~-----~~~~~  143 (189)
T cd04121          71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAE-----RNGMT  143 (189)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHH-----HcCCE
Confidence            68899999999999999999999999998888775542  4789999999999864  234444444442     34578


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++|||++|.||+++|+++++.+..
T Consensus       144 ~~e~SAk~g~~V~~~F~~l~~~i~~  168 (189)
T cd04121         144 FFEVSPLCNFNITESFTELARIVLM  168 (189)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04120 Rab12 Rab12 subfamily

Probab=99.87  E-value=5.6e-21  Score=114.37  Aligned_cols=99  Identities=18%  Similarity=0.223  Sum_probs=76.3

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|+.||+++|++|+|||++++.+|+.+..|+..+ ......+.|+++|+||+|+...  ....+..+...    +..++
T Consensus        64 ~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i-~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~----~~~~~  138 (202)
T cd04120          64 SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI-DKYASEDAELLLVGNKLDCETDREISRQQGEKFAQ----QITGM  138 (202)
T ss_pred             HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH-HHhCCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCC
Confidence            47899999999999999999999999998877654 3323356899999999998532  23333333322    11246


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .++++||++|.||+++|+++++.+.+
T Consensus       139 ~~~etSAktg~gV~e~F~~l~~~~~~  164 (202)
T cd04120         139 RFCEASAKDNFNVDEIFLKLVDDILK  164 (202)
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999987754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04158 ARD1 ARD1 subfamily

Probab=99.86  E-value=1.5e-20  Score=109.71  Aligned_cols=102  Identities=46%  Similarity=0.778  Sum_probs=82.8

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc-CCCceEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL-KDRTFQI   80 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~   80 (106)
                      +|..|++++|++++|+|.+++.++++...++..++......+.|+++++||+|+.......++.+.+..... ....+.+
T Consensus        59 ~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (169)
T cd04158          59 LWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYI  138 (169)
T ss_pred             HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEE
Confidence            688999999999999999999999999988888876644456899999999999765566666666543221 1224578


Q ss_pred             EEccccCCCChHHHHHHHHHHHh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++||++|.|++++|++|.+.+.
T Consensus       139 ~~~Sa~~g~gv~~~f~~l~~~~~  161 (169)
T cd04158         139 QGCDARSGMGLYEGLDWLSRQLV  161 (169)
T ss_pred             EeCcCCCCCCHHHHHHHHHHHHh
Confidence            89999999999999999998764

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG0071|consensus

Probab=99.86  E-value=6.4e-21  Score=105.93  Aligned_cols=104  Identities=44%  Similarity=0.852  Sum_probs=96.9

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      |+|+|||..+.++|||+|..+.+..++.++++.+.++++++.+.|+++.+||.|++.+....++.+.+.....+...+.+
T Consensus        76 plWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~v  155 (180)
T KOG0071|consen   76 PLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYV  155 (180)
T ss_pred             HHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEe
Confidence            68999999999999999999999999999999999999999999999999999999998999999999887777788999


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ..+||.+|.|+.+.+.||.+.+..
T Consensus       156 qp~~a~~gdgL~eglswlsnn~~~  179 (180)
T KOG0071|consen  156 QPSCALSGDGLKEGLSWLSNNLKE  179 (180)
T ss_pred             eccccccchhHHHHHHHHHhhccC
Confidence            999999999999999999887643

>KOG0072|consensus

Probab=99.86  E-value=4.7e-21  Score=106.86  Aligned_cols=105  Identities=59%  Similarity=1.002  Sum_probs=95.0

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      |+|++||.++|++|+|+|.++.+.......++...+++.++....++++.||.|........++...++...++...+.+
T Consensus        77 PyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~I  156 (182)
T KOG0072|consen   77 PYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQI  156 (182)
T ss_pred             HHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEE
Confidence            68999999999999999999988877777778888888888889999999999998777788888888888778888999


Q ss_pred             EEccccCCCChHHHHHHHHHHHhhc
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +.+||.+|+|++...+||.+.++.+
T Consensus       157 v~tSA~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  157 VKTSAVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             EeeccccccCCcHHHHHHHHHHhcc
Confidence            9999999999999999999988765

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.86  E-value=1.8e-20  Score=109.17  Aligned_cols=100  Identities=36%  Similarity=0.556  Sum_probs=82.4

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc---CCCc
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL---KDRT   77 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~   77 (106)
                      ++|+.|++++|++++|+|++++.++.+...++..++......++|+++++||+|++......++.+.+....+   ....
T Consensus        58 ~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~  137 (167)
T cd04161          58 GIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSL  137 (167)
T ss_pred             HHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCce
Confidence            3699999999999999999999899998888888877655567999999999999876666677776654433   1235


Q ss_pred             eEEEEccccCC------CChHHHHHHHHH
Q psy12794         78 FQIFKTSAKEG------EGLNDSMDWLSN  100 (106)
Q Consensus        78 ~~~~~~sa~~~------~~v~~~~~~l~~  100 (106)
                      +.+++|||++|      +|+.+.|+||..
T Consensus       138 ~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         138 CHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             EEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence            78899999998      899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04154 Arl2 Arl2 subfamily

Probab=99.85  E-value=2.7e-20  Score=108.86  Aligned_cols=99  Identities=47%  Similarity=0.775  Sum_probs=80.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|..|++++|++++|+|++++.++.+...++..++......+.|+++++||+|+.+.....++.+.+.........++++
T Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (173)
T cd04154          74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQ  153 (173)
T ss_pred             HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEE
Confidence            68889999999999999999988988887787776544446799999999999876556666766665433334578999


Q ss_pred             EccccCCCChHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~  100 (106)
                      ++||++|.|++++|+++.+
T Consensus       154 ~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         154 PCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             eccCCCCcCHHHHHHHHhc
Confidence            9999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.85  E-value=3.6e-20  Score=108.54  Aligned_cols=99  Identities=48%  Similarity=0.889  Sum_probs=81.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      .|..+++++|++++|+|.+++.++.....++.++++.....++|+++++||+|+.......++.+.++........++++
T Consensus        75 ~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~  154 (174)
T cd04153          75 SWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQ  154 (174)
T ss_pred             HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEE
Confidence            58889999999999999999888888887788877665456799999999999876555666777666443344567899


Q ss_pred             EccccCCCChHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~  100 (106)
                      ++||++|.|+++++++|.+
T Consensus       155 ~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         155 GCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             ecccCCCCCHHHHHHHHhc
Confidence            9999999999999999975

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04151 Arl1 Arl1 subfamily

Probab=99.84  E-value=6.9e-20  Score=105.71  Aligned_cols=99  Identities=69%  Similarity=1.130  Sum_probs=77.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|+.|++++|++++|+|++++.++.....++...++.....++|+++++||+|+.+.....++.+.++.......+.+++
T Consensus        59 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  138 (158)
T cd04151          59 YWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIF  138 (158)
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEE
Confidence            68999999999999999999877777666676665554445789999999999875544556666655433333457899


Q ss_pred             EccccCCCChHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~  100 (106)
                      ++||++|.|+++++++|++
T Consensus       139 ~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         139 KTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             EeeccCCCCHHHHHHHHhc
Confidence            9999999999999999874

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG0075|consensus

Probab=99.84  E-value=6.2e-20  Score=102.74  Aligned_cols=103  Identities=31%  Similarity=0.564  Sum_probs=95.9

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++|..|++.++++++|+|++++......+.++..++..+.+.+.|+++++||.|++++.+...+.+.++......+.+..
T Consensus        80 smWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC  159 (186)
T KOG0075|consen   80 SMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCC  159 (186)
T ss_pred             HHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEE
Confidence            58999999999999999999999988888889999998888899999999999999999999999999988777888999


Q ss_pred             EEccccCCCChHHHHHHHHHHHh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +.+|+++..|++-..+||.++-.
T Consensus       160 ~siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  160 FSISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             EEEEEcCCccHHHHHHHHHHHhh
Confidence            99999999999999999998765

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.84  E-value=7.7e-20  Score=108.05  Aligned_cols=100  Identities=36%  Similarity=0.612  Sum_probs=83.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcC-------
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLK-------   74 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-------   74 (106)
                      +|..|++++|++++|+|++++.++.....++.++++.....+.|+++++||+|++.....+++.+.++.....       
T Consensus        77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~  156 (184)
T smart00178       77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVG  156 (184)
T ss_pred             HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccC
Confidence            6899999999999999999998888888778777765445678999999999997767778888887754321       


Q ss_pred             CCceEEEEccccCCCChHHHHHHHHHH
Q psy12794         75 DRTFQIFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        75 ~~~~~~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      .+...+++|||++|+|++++++||.+.
T Consensus       157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      157 VRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             CceeEEEEeecccCCChHHHHHHHHhh
Confidence            246689999999999999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.84  E-value=5e-20  Score=110.11  Aligned_cols=96  Identities=18%  Similarity=0.248  Sum_probs=76.0

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCceE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++|+.||+++|++|+|||++++.+|..+..|+.++.+..  .+.|+++|+||+|+.... ..... +..     ...++.
T Consensus        59 ~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~-----~~~~~~  130 (200)
T smart00176       59 GLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-TFH-----RKKNLQ  130 (200)
T ss_pred             hhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-HHH-----HHcCCE
Confidence            368899999999999999999999999988777665542  478999999999985432 22222 221     234678


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++|||++|.||.++|+++++.+.+
T Consensus       131 ~~e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176      131 YYDISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999987754

Ran is involved in the active transport of proteins through nuclear pores.

>cd04157 Arl6 Arl6 subfamily

Probab=99.84  E-value=9.3e-20  Score=105.23  Aligned_cols=99  Identities=38%  Similarity=0.784  Sum_probs=77.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCC--CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL--RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++.....++..+++....  .+.|+++++||+|+.+.....++.+.++........+.
T Consensus        61 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~  140 (162)
T cd04157          61 LWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWH  140 (162)
T ss_pred             HHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEE
Confidence            6889999999999999999988888777777776654322  46899999999998765444555555543322234567


Q ss_pred             EEEccccCCCChHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~  100 (106)
                      ++++||++|.|++++|++|.+
T Consensus       141 ~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         141 IFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             EEEeeCCCCCchHHHHHHHhc
Confidence            999999999999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PTZ00099 rab6; Provisional

Probab=99.84  E-value=9.1e-20  Score=107.13  Aligned_cols=98  Identities=20%  Similarity=0.319  Sum_probs=77.2

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|..||+++|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+...  ....+..+..     ...+.
T Consensus        44 ~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~piilVgNK~DL~~~~~v~~~e~~~~~-----~~~~~  117 (176)
T PTZ00099         44 SLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIALVGNKTDLGDLRKVTYEEGMQKA-----QEYNT  117 (176)
T ss_pred             hccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCC
Confidence            3688899999999999999999999999888877765432 46899999999998542  2333333332     22345


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .++++||++|.|++++|+++++.+.+
T Consensus       118 ~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099        118 MFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            78999999999999999999988754

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.83  E-value=7.6e-20  Score=107.06  Aligned_cols=100  Identities=18%  Similarity=0.225  Sum_probs=76.2

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|+.|++++|++++|||++++.+|..+..|+..+.......+.|+++|+||+|+...  ....+..+..     +..++
T Consensus        65 ~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a-----~~~~~  139 (172)
T cd04141          65 AMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLA-----REFNC  139 (172)
T ss_pred             HHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHH-----HHhCC
Confidence            3688999999999999999999999998876544433222356899999999998543  2333333322     22357


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++|||++|.|++++|+++++.+.++
T Consensus       140 ~~~e~Sa~~~~~v~~~f~~l~~~~~~~  166 (172)
T cd04141         140 PFFETSAALRHYIDDAFHGLVREIRRK  166 (172)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999877643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01875 RhoG RhoG subfamily

Probab=99.83  E-value=1e-19  Score=108.10  Aligned_cols=97  Identities=11%  Similarity=0.133  Sum_probs=72.5

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH--------------HHHH
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMSV--------------AEVH   65 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------------~~~~   65 (106)
                      ++|+.||+++|++|+|||++++.+|+.+.. |.......  ..+.|+++|+||.|+.+....              .+..
T Consensus        66 ~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~  143 (191)
T cd01875          66 RLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGG  143 (191)
T ss_pred             hhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHH
Confidence            468899999999999999999999999874 55444332  247899999999998643211              1111


Q ss_pred             HHhCCCCcCCCc-eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         66 RALGLENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        66 ~~~~~~~~~~~~-~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +..     +..+ ++++++||++|.|++++|+++++.+..
T Consensus       144 ~~a-----~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         144 ALA-----KQIHAVKYLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             HHH-----HHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence            111     1223 589999999999999999999987653

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.83  E-value=2e-19  Score=103.73  Aligned_cols=99  Identities=39%  Similarity=0.703  Sum_probs=79.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc-CCCceEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL-KDRTFQI   80 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~   80 (106)
                      +|..+++++|++++|+|++++.++.....++...++.....+.|+++++||+|+.......++...++.... ...++++
T Consensus        60 ~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  139 (160)
T cd04156          60 VWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYV  139 (160)
T ss_pred             HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEE
Confidence            588899999999999999998888888888888776644467999999999998755555666665543222 2346789


Q ss_pred             EEccccCCCChHHHHHHHHH
Q psy12794         81 FKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~  100 (106)
                      ++|||++|+|++++|++|.+
T Consensus       140 ~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         140 QPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             EecccccCCChHHHHHHHhc
Confidence            99999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.83  E-value=3.2e-19  Score=105.34  Aligned_cols=103  Identities=35%  Similarity=0.565  Sum_probs=79.8

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc-CCCceEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL-KDRTFQI   80 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~   80 (106)
                      +|..|++++|++++|+|++++.++.....++.++.......++|+++++||+|+.......++....+.... ....+++
T Consensus        68 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (183)
T cd04152          68 LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHV  147 (183)
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEE
Confidence            688999999999999999998888887777766665444457899999999998755455555555442221 2234678


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++||++|+|+++++++|.+.+.+
T Consensus       148 ~~~SA~~~~gi~~l~~~l~~~l~~  171 (183)
T cd04152         148 QPACAIIGEGLQEGLEKLYEMILK  171 (183)
T ss_pred             EEeecccCCCHHHHHHHHHHHHHH
Confidence            999999999999999999987753

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04133 Rop_like Rop subfamily

Probab=99.83  E-value=1.6e-19  Score=106.14  Aligned_cols=96  Identities=13%  Similarity=0.140  Sum_probs=73.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHH-HHHHHHHhcCcCCCCCeEEEEeeCCCCCCc------------CCHHHHHHHh
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGIS-KEELLAMLKEEELRDAILVILANKQDMKNC------------MSVAEVHRAL   68 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~   68 (106)
                      +++.|+++++++++|||++++.+|+.+ ..|+..+.+..  .+.|+++||||+|+.+.            ....+..+..
T Consensus        65 ~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a  142 (176)
T cd04133          65 LRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR  142 (176)
T ss_pred             cchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH
Confidence            577899999999999999999999998 56776654432  46899999999998542            2233333332


Q ss_pred             CCCCcCCCce-EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         69 GLENLKDRTF-QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        69 ~~~~~~~~~~-~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                           +..+. .+++|||++|.||+++|..+++.+.+
T Consensus       143 -----~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~  174 (176)
T cd04133         143 -----KQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQ  174 (176)
T ss_pred             -----HHcCCCEEEECCCCcccCHHHHHHHHHHHHhc
Confidence                 22344 69999999999999999999987643

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0092|consensus

Probab=99.83  E-value=7.4e-20  Score=106.27  Aligned_cols=98  Identities=21%  Similarity=0.358  Sum_probs=81.6

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN--CMSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~   78 (106)
                      |+-+-||++++++|+|||+++..||.....|+.++..... .+.-+.+||||+|+..  .....++....     .+.++
T Consensus        69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yA-----e~~gl  142 (200)
T KOG0092|consen   69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYA-----ESQGL  142 (200)
T ss_pred             ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHH-----HhcCC
Confidence            3456799999999999999999999999999988766543 6678888999999976  34555565555     34678


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .|+++||++|.|++++|..|.+.+.+
T Consensus       143 l~~ETSAKTg~Nv~~if~~Ia~~lp~  168 (200)
T KOG0092|consen  143 LFFETSAKTGENVNEIFQAIAEKLPC  168 (200)
T ss_pred             EEEEEecccccCHHHHHHHHHHhccC
Confidence            99999999999999999999988764

>cd00879 Sar1 Sar1 subfamily

Probab=99.82  E-value=5e-19  Score=104.81  Aligned_cols=101  Identities=36%  Similarity=0.647  Sum_probs=81.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc--------
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL--------   73 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--------   73 (106)
                      +|..|++++|++++|+|.+++.++.....++...+......+.|+++++||+|+.......++.+.++....        
T Consensus        79 ~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (190)
T cd00879          79 LWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSL  158 (190)
T ss_pred             HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccc
Confidence            588899999999999999998888888778888776554567999999999998766667777777764321        


Q ss_pred             ---CCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         74 ---KDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        74 ---~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                         ....+++++|||++|+|++++|+||.+.+
T Consensus       159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             cccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence               12346799999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG0078|consensus

Probab=99.82  E-value=2e-19  Score=105.85  Aligned_cols=98  Identities=16%  Similarity=0.250  Sum_probs=78.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +.+.||+.|+++++|||+++..+|+.+..|+...-++ ...++|.++||||+|+...  ...++.....     ...++.
T Consensus        77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA-----~e~G~~  150 (207)
T KOG0078|consen   77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEALA-----REYGIK  150 (207)
T ss_pred             HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHHHH-----HHhCCe
Confidence            4578999999999999999999999999977665444 3358999999999998752  2333333332     345789


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      |+|+||++|.||++.|..|++.+.++
T Consensus       151 F~EtSAk~~~NI~eaF~~La~~i~~k  176 (207)
T KOG0078|consen  151 FFETSAKTNFNIEEAFLSLARDILQK  176 (207)
T ss_pred             EEEccccCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999988754

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.82  E-value=4e-19  Score=106.25  Aligned_cols=100  Identities=21%  Similarity=0.229  Sum_probs=76.7

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC---cCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCC
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE---EELRDAILVILANKQDMKN--CMSVAEVHRALGLENLKD   75 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~   75 (106)
                      ++|+.|++++|++++|||++++.+++.+..|+..+...   ....+.|+++|+||+|+..  .....++.+....    .
T Consensus        65 ~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~  140 (201)
T cd04107          65 GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE----N  140 (201)
T ss_pred             hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH----c
Confidence            36889999999999999999999999988776554332   1125689999999999862  3344455544431    1


Q ss_pred             CceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         76 RTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ....++++||++|.|++++|+++.+.+.+
T Consensus       141 ~~~~~~e~Sak~~~~v~e~f~~l~~~l~~  169 (201)
T cd04107         141 GFIGWFETSAKEGINIEEAMRFLVKNILA  169 (201)
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            12589999999999999999999987753

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=99.81  E-value=4.8e-19  Score=104.03  Aligned_cols=100  Identities=13%  Similarity=0.242  Sum_probs=78.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|||++++.++..+..|+..+.......+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        79 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~  153 (180)
T cd04127          79 LTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD-----KYGIP  153 (180)
T ss_pred             HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH-----HcCCe
Confidence            578899999999999999999999999888777655433346899999999998643  23333333332     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhcC
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKHL  106 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~~  106 (106)
                      ++++||++|.|++++|+++.+.+.+++
T Consensus       154 ~~e~Sak~~~~v~~l~~~l~~~~~~~~  180 (180)
T cd04127         154 YFETSAATGTNVEKAVERLLDLVMKRI  180 (180)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence            999999999999999999998887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04175 Rap1 Rap1 subgroup

Probab=99.81  E-value=4.2e-19  Score=102.89  Aligned_cols=98  Identities=14%  Similarity=0.194  Sum_probs=76.6

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|+.|++++|++++|+|++++.+++.+..|+..+.......+.|+++++||+|+....  ...+..+..     +..++
T Consensus        64 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~  138 (164)
T cd04175          64 AMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA-----RQWGC  138 (164)
T ss_pred             hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH-----HHhCC
Confidence            36888999999999999999999999988888777654444678999999999986432  222222221     12246


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++++||++|.|++++|.++.+.+.
T Consensus       139 ~~~~~Sa~~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         139 AFLETSAKAKINVNEIFYDLVRQIN  163 (164)
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHhh
Confidence            8999999999999999999998764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.81  E-value=5.9e-19  Score=102.74  Aligned_cols=96  Identities=19%  Similarity=0.237  Sum_probs=75.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      ++..+++++|++|+|+|++++.++..+..|+..+....  .+.|+++|+||+|+.......+..+..     +...++++
T Consensus        65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~  137 (166)
T cd00877          65 LRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFH-----RKKNLQYY  137 (166)
T ss_pred             ccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHH-----HHcCCEEE
Confidence            57789999999999999999999998888777765542  279999999999986433222222222     23457899


Q ss_pred             EccccCCCChHHHHHHHHHHHhh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++||++|.|++++|++|++.+.+
T Consensus       138 e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         138 EISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             EEeCCCCCChHHHHHHHHHHHHh
Confidence            99999999999999999988764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04122 Rab14 Rab14 subfamily

Probab=99.81  E-value=7.8e-19  Score=102.03  Aligned_cols=97  Identities=18%  Similarity=0.263  Sum_probs=76.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|+.+++++|++++|||++++.+++.+..|+....... ..+.|+++++||+|+.+.  ....+..+...     ..+++
T Consensus        67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  140 (166)
T cd04122          67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFAD-----ENGLL  140 (166)
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCE
Confidence            57889999999999999999999999988877654432 246899999999998653  23344444432     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|.+++..+.+
T Consensus       141 ~~e~Sa~~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         141 FLECSAKTGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999987754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.81  E-value=7.1e-19  Score=102.23  Aligned_cols=98  Identities=38%  Similarity=0.646  Sum_probs=77.9

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc-CCCceE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL-KDRTFQ   79 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~   79 (106)
                      ++|..|++++|++++|+|.+++.++.....++.++....  .++|+++++||+|+.......++.+.++.... +..+++
T Consensus        59 ~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  136 (164)
T cd04162          59 KYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWI  136 (164)
T ss_pred             HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceE
Confidence            368899999999999999999888888888887776542  57999999999998766555565555543332 445788


Q ss_pred             EEEccccC------CCChHHHHHHHHH
Q psy12794         80 IFKTSAKE------GEGLNDSMDWLSN  100 (106)
Q Consensus        80 ~~~~sa~~------~~~v~~~~~~l~~  100 (106)
                      ++++||++      ++||.++|+.+..
T Consensus       137 ~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         137 LQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             EEEeeecCCCChhHHHHHHHHHHHHhc
Confidence            89888888      9999999998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.81  E-value=7.2e-19  Score=103.82  Aligned_cols=95  Identities=16%  Similarity=0.138  Sum_probs=72.8

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHH-HHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGIS-KEELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVHR   66 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~~   66 (106)
                      +++.||+++|++++|||++++.+|+.+ ..|+..+....  .+.|+++|+||+|+.+.              ....+..+
T Consensus        69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~  146 (182)
T cd04172          69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN  146 (182)
T ss_pred             hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence            578899999999999999999999997 56666554432  46899999999998531              23333333


Q ss_pred             HhCCCCcCCCc-eEEEEccccCCCC-hHHHHHHHHHHHh
Q psy12794         67 ALGLENLKDRT-FQIFKTSAKEGEG-LNDSMDWLSNALQ  103 (106)
Q Consensus        67 ~~~~~~~~~~~-~~~~~~sa~~~~~-v~~~~~~l~~~~~  103 (106)
                      ..     +..+ .+|++|||++|.| |+++|..+.+...
T Consensus       147 ~a-----~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         147 MA-----KQIGAATYIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             HH-----HHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence            33     2234 4899999999998 9999999988643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.80  E-value=5.7e-19  Score=102.14  Aligned_cols=94  Identities=11%  Similarity=0.173  Sum_probs=71.9

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC----cCCHHHHHHHhCCCCcCCCceE
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN----CMSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ..|++++|++++|||++++.+|+.+..|+.++.......+.|+++|+||.|+..    .....+..+...    +...+.
T Consensus        60 ~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~  135 (158)
T cd04103          60 AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA----DMKRCS  135 (158)
T ss_pred             hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH----HhCCCc
Confidence            357889999999999999999999988888776654445689999999999742    122223323221    123478


Q ss_pred             EEEccccCCCChHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      |++|||++|.||+++|+.+++.
T Consensus       136 ~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         136 YYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             EEEEecCCCCCHHHHHHHHHhh
Confidence            9999999999999999999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.80  E-value=8.4e-19  Score=106.20  Aligned_cols=96  Identities=19%  Similarity=0.223  Sum_probs=75.7

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCceE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++|..||+++|++|+|||++++.++..+..|+..+...  ..+.|+++|+||+|+.... ...++ +..     ...+++
T Consensus        77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~~~-----~~~~~~  148 (219)
T PLN03071         77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFH-----RKKNLQ  148 (219)
T ss_pred             hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-HHH-----HhcCCE
Confidence            36788999999999999999999999998887776543  2468999999999985432 22222 222     234578


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|++|++.+.+
T Consensus       149 ~~e~SAk~~~~i~~~f~~l~~~~~~  173 (219)
T PLN03071        149 YYEISAKSNYNFEKPFLYLARKLAG  173 (219)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999987753

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.80  E-value=6.5e-19  Score=101.50  Aligned_cols=97  Identities=15%  Similarity=0.176  Sum_probs=75.2

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCceE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++|..|+++++++++|+|++++.++.++..|+..+.+.....+.|+++++||+|+.+.. ...+..+...     ..+.+
T Consensus        64 ~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~  138 (162)
T cd04138          64 AMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK-----SYGIP  138 (162)
T ss_pred             HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH-----HhCCe
Confidence            36888999999999999999998999888777776654434578999999999986532 2233333321     23458


Q ss_pred             EEEccccCCCChHHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++++||++|.|++++|+++.+.+
T Consensus       139 ~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         139 YIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.80  E-value=2.3e-18  Score=99.20  Aligned_cols=99  Identities=49%  Similarity=0.837  Sum_probs=81.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|..+++++|++++|+|++++.++.....++..........+.|+++++||+|+.......++.+.++........++++
T Consensus        59 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (158)
T cd00878          59 LWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQ  138 (158)
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEE
Confidence            58889999999999999999988988888787776654446799999999999876655667777665433334567999


Q ss_pred             EccccCCCChHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~  100 (106)
                      ++||++|.|++++|++|..
T Consensus       139 ~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         139 PCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             EeeCCCCCCHHHHHHHHhh
Confidence            9999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG0094|consensus

Probab=99.80  E-value=4.8e-19  Score=103.26  Aligned_cols=101  Identities=22%  Similarity=0.323  Sum_probs=81.8

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++.+.|++++.++|.|||+++..+|+....|+....+..+..++-+++||||.||.+..   ++...-+....+..+..|
T Consensus        86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr---qvs~eEg~~kAkel~a~f  162 (221)
T KOG0094|consen   86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR---QVSIEEGERKAKELNAEF  162 (221)
T ss_pred             hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh---hhhHHHHHHHHHHhCcEE
Confidence            47789999999999999999999999999999999988776678999999999997542   222222211123445689


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .++||+.|.||.++|..++..+..
T Consensus       163 ~etsak~g~NVk~lFrrIaa~l~~  186 (221)
T KOG0094|consen  163 IETSAKAGENVKQLFRRIAAALPG  186 (221)
T ss_pred             EEecccCCCCHHHHHHHHHHhccC
Confidence            999999999999999998877653

>cd04126 Rab20 Rab20 subfamily

Probab=99.80  E-value=1.9e-18  Score=104.61  Aligned_cols=101  Identities=19%  Similarity=0.285  Sum_probs=74.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC---------------------cCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN---------------------CMS   60 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------------------~~~   60 (106)
                      +|..|++++|++|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+                     ...
T Consensus        60 l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~  138 (220)
T cd04126          60 LGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVT  138 (220)
T ss_pred             hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCC
Confidence            67889999999999999999999999988887766532 24689999999999864                     112


Q ss_pred             HHHHHHHhCCCC---------cCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         61 VAEVHRALGLEN---------LKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        61 ~~~~~~~~~~~~---------~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .++..+......         ......+|++|||++|.||+++|..+++.+.
T Consensus       139 ~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         139 LEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             HHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            233333221100         0111368999999999999999999997764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.80  E-value=2e-18  Score=100.19  Aligned_cols=99  Identities=38%  Similarity=0.683  Sum_probs=79.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCC--cCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLEN--LKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.++.....++..+++.....+.|+++++||+|+.......++.+.+....  ......+
T Consensus        66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (167)
T cd04160          66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCL  145 (167)
T ss_pred             HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceE
Confidence            57889999999999999998888888887787777665456799999999999877655566666554322  1234578


Q ss_pred             EEEccccCCCChHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~  100 (106)
                      ++++||++|+|+++++++|++
T Consensus       146 ~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         146 VLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             EEEeeCCCCcCHHHHHHHHhc
Confidence            999999999999999999875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04136 Rap_like Rap-like subfamily

Probab=99.79  E-value=1.5e-18  Score=100.26  Aligned_cols=97  Identities=15%  Similarity=0.224  Sum_probs=74.3

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|+.|++++|++++|||++++.+++.+..|+..+.......+.|+++++||+|+...  ....+.....     +..+.
T Consensus        64 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~  138 (163)
T cd04136          64 AMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA-----RQWGC  138 (163)
T ss_pred             hHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH-----HHcCC
Confidence            3688899999999999999999999998887777665433357899999999998542  2222222222     11236


Q ss_pred             EEEEccccCCCChHHHHHHHHHHH
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +++++||++|.|+.++|+++.+.+
T Consensus       139 ~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         139 PFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             eEEEecCCCCCCHHHHHHHHHHhc
Confidence            899999999999999999998764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04176 Rap2 Rap2 subgroup

Probab=99.79  E-value=9e-19  Score=101.36  Aligned_cols=97  Identities=18%  Similarity=0.195  Sum_probs=74.4

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|+.|++++|++++|+|++++.++.++..|+..+.......+.|+++++||+|+....  ...+... +.    ...+.
T Consensus        64 ~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~  138 (163)
T cd04176          64 SMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRA-LA----EEWGC  138 (163)
T ss_pred             chHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHH-HH----HHhCC
Confidence            46889999999999999999999999998877776654333578999999999985422  2222222 11    11245


Q ss_pred             EEEEccccCCCChHHHHHHHHHHH
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +++++||++|.|+.++|.++++.+
T Consensus       139 ~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         139 PFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             EEEEecCCCCCCHHHHHHHHHHhc
Confidence            899999999999999999998765

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PTZ00369 Ras-like protein; Provisional

Probab=99.79  E-value=2.1e-18  Score=102.26  Aligned_cols=99  Identities=16%  Similarity=0.204  Sum_probs=76.3

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|..|++++|++++|+|++++.+++.+..|+..+.......+.|+++++||+|+.+.  ....+..+..     ...+.
T Consensus        68 ~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~-----~~~~~  142 (189)
T PTZ00369         68 AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA-----KSFGI  142 (189)
T ss_pred             hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHhCC
Confidence            3688899999999999999999999999887777665433357899999999998543  2222222222     12245


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++++||++|.|++++|+++++.+.+
T Consensus       143 ~~~e~Sak~~~gi~~~~~~l~~~l~~  168 (189)
T PTZ00369        143 PFLETSAKQRVNVDEAFYELVREIRK  168 (189)
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999987754

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.79  E-value=1.3e-18  Score=102.04  Aligned_cols=94  Identities=12%  Similarity=0.107  Sum_probs=68.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--------------HHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMS--------------VAEVHR   66 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--------------~~~~~~   66 (106)
                      +|+.|++++|++|+|||++++.+|+.+.. |+..+...  ..+.|+++|+||+|+.+...              ..+..+
T Consensus        65 ~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  142 (174)
T cd01871          65 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA  142 (174)
T ss_pred             hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHH
Confidence            67889999999999999999999999864 54444332  24689999999999854211              111111


Q ss_pred             HhCCCCcCCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794         67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      ...    +....++++|||++|.|++++|+.+++.
T Consensus       143 ~~~----~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         143 MAK----EIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             HHH----HcCCcEEEEecccccCCHHHHHHHHHHh
Confidence            111    1122589999999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04111 Rab39 Rab39 subfamily

Probab=99.79  E-value=2.3e-18  Score=103.80  Aligned_cols=99  Identities=18%  Similarity=0.372  Sum_probs=77.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|||++++.+++++..|+.+..........|+++++||+|+...  ....+..+..     +..+++
T Consensus        68 ~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~~  142 (211)
T cd04111          68 ITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA-----KDLGMK  142 (211)
T ss_pred             HHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH-----HHhCCE
Confidence            577899999999999999999999999988887765543346789999999998643  2333333332     223478


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++||++|.|++++|++|++.+.++
T Consensus       143 ~~e~Sak~g~~v~e~f~~l~~~~~~~  168 (211)
T cd04111         143 YIETSARTGDNVEEAFELLTQEIYER  168 (211)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999877543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.79  E-value=2.9e-18  Score=104.48  Aligned_cols=96  Identities=16%  Similarity=0.148  Sum_probs=72.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHH-HHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGIS-KEELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVHR   66 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~~   66 (106)
                      +++.||+++|++++|||++++.+|+.+ ..|+..+....  .+.|+++|+||+|+...              ...++..+
T Consensus        77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~  154 (232)
T cd04174          77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCA  154 (232)
T ss_pred             HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHH
Confidence            577899999999999999999999975 56666554432  46899999999998531              22333333


Q ss_pred             HhCCCCcCCCce-EEEEccccCCC-ChHHHHHHHHHHHhh
Q psy12794         67 ALGLENLKDRTF-QIFKTSAKEGE-GLNDSMDWLSNALQK  104 (106)
Q Consensus        67 ~~~~~~~~~~~~-~~~~~sa~~~~-~v~~~~~~l~~~~~~  104 (106)
                      ..     +..++ .|++|||++|+ ||+++|..++..+.+
T Consensus       155 ~a-----~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         155 LA-----KQLGAEVYLECSAFTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             HH-----HHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence            33     23455 69999999998 899999999887643

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.79  E-value=1.7e-18  Score=103.24  Aligned_cols=91  Identities=14%  Similarity=0.175  Sum_probs=68.8

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCc---------------------CCH
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNC---------------------MSV   61 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~---------------------~~~   61 (106)
                      +.||+++|++++|||++++.+|+.+.. |+..+....  .+.|+++|+||+|+...                     ...
T Consensus        82 ~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          82 RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            458999999999999999999998864 555543331  46899999999998531                     122


Q ss_pred             HHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794         62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      .+..+..     +..+++|++|||++|.||+++|+.++++
T Consensus       160 ~e~~~~a-----~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVA-----KELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHH-----HHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            3333332     2345689999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04144 Ras2 Ras2 subfamily

Probab=99.78  E-value=3.7e-18  Score=101.30  Aligned_cols=98  Identities=16%  Similarity=0.155  Sum_probs=74.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC--CCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE--LRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~   77 (106)
                      +|..|++++|++++|||++++.+++.+..|+..+.....  ..+.|+++|+||+|+...  ....+..+..     ...+
T Consensus        63 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~  137 (190)
T cd04144          63 LRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALA-----RRLG  137 (190)
T ss_pred             HHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHH-----HHhC
Confidence            578899999999999999999999998887766544321  246899999999998542  2222222222     1234


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++++||++|.|++++|+++.+.+.+
T Consensus       138 ~~~~e~SAk~~~~v~~l~~~l~~~l~~  164 (190)
T cd04144         138 CEFIEASAKTNVNVERAFYTLVRALRQ  164 (190)
T ss_pred             CEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            589999999999999999999987754

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.78  E-value=3e-18  Score=100.60  Aligned_cols=95  Identities=14%  Similarity=0.118  Sum_probs=69.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--------------HHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMS--------------VAEVHR   66 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--------------~~~~~~   66 (106)
                      +|..|++++|++++|||++++.+++.+.. |+...... . .+.|+++|+||+|+.....              .++..+
T Consensus        65 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~  142 (175)
T cd01874          65 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEK  142 (175)
T ss_pred             hhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHH
Confidence            57789999999999999999999999874 55444332 1 4689999999999854311              111111


Q ss_pred             HhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ...    ....+.+++|||++|.|++++|+.+++..
T Consensus       143 ~a~----~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         143 LAR----DLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             HHH----HhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            110    11236899999999999999999998753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04109 Rab28 Rab28 subfamily

Probab=99.78  E-value=2.9e-18  Score=103.56  Aligned_cols=97  Identities=18%  Similarity=0.188  Sum_probs=73.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC--CCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE--LRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~   77 (106)
                      +|+.|++++|++++|||++++.+++.+..|+..+.....  ..+.|+++|+||+|+...  ....+..+...     ..+
T Consensus        66 l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-----~~~  140 (215)
T cd04109          66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ-----ANG  140 (215)
T ss_pred             HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH-----HcC
Confidence            578899999999999999999999998877666554321  134689999999998632  22233333222     234


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++++||++|.|++++|+++++.+.
T Consensus       141 ~~~~~iSAktg~gv~~lf~~l~~~l~  166 (215)
T cd04109         141 MESCLVSAKTGDRVNLLFQQLAAELL  166 (215)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            68899999999999999999998775

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.78  E-value=7e-18  Score=98.14  Aligned_cols=97  Identities=21%  Similarity=0.251  Sum_probs=76.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.++..+..|+..+... ...+.|+++++||+|+.+.  ....+..+...     ..+++
T Consensus        68 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  141 (167)
T cd01867          68 ITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIK  141 (167)
T ss_pred             HHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCE
Confidence            5778899999999999999999999988877766543 2246899999999998743  23333333332     23458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+.+
T Consensus       142 ~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         142 FLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999998765

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04131 Rnd Rnd subfamily

Probab=99.78  E-value=4.9e-18  Score=99.97  Aligned_cols=95  Identities=16%  Similarity=0.118  Sum_probs=71.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHH-HHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGIS-KEELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVHR   66 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~~   66 (106)
                      +++.|++++|++++|||++++.+|+.+ ..|+..+.+..  .+.|+++|+||+|+.+.              ....+..+
T Consensus        65 ~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~  142 (178)
T cd04131          65 VRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCA  142 (178)
T ss_pred             cchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHH
Confidence            567789999999999999999999996 56666554432  46899999999998541              22233333


Q ss_pred             HhCCCCcCCCce-EEEEccccCCCC-hHHHHHHHHHHHh
Q psy12794         67 ALGLENLKDRTF-QIFKTSAKEGEG-LNDSMDWLSNALQ  103 (106)
Q Consensus        67 ~~~~~~~~~~~~-~~~~~sa~~~~~-v~~~~~~l~~~~~  103 (106)
                      ..     +..++ +|++|||++|+| |+++|..+.+...
T Consensus       143 ~a-----~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         143 IA-----KQLGAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             HH-----HHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence            32     22344 799999999995 9999999988643

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0076|consensus

Probab=99.78  E-value=2.8e-19  Score=102.46  Aligned_cols=104  Identities=37%  Similarity=0.664  Sum_probs=89.6

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCC-cCCCceE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLEN-LKDRTFQ   79 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~   79 (106)
                      |+|..||..+|++|+++|++++..+.+....+.....+....+.|+++.+||.|+.+.....++...++... ...+.++
T Consensus        84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~  163 (197)
T KOG0076|consen   84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNP  163 (197)
T ss_pred             HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCc
Confidence            689999999999999999999999999998899988888888999999999999987666667766666322 2345678


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +..+||.+|+||++..+|+...+.+
T Consensus       164 ~~pvSal~gegv~egi~w~v~~~~k  188 (197)
T KOG0076|consen  164 FQPVSALTGEGVKEGIEWLVKKLEK  188 (197)
T ss_pred             cccchhhhcccHHHHHHHHHHHHhh
Confidence            9999999999999999999988764

>cd04134 Rho3 Rho3 subfamily

Probab=99.78  E-value=4.3e-18  Score=100.97  Aligned_cols=96  Identities=17%  Similarity=0.188  Sum_probs=71.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHH--------------HHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMSVAE--------------VHR   66 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~--------------~~~   66 (106)
                      +|+.||+++|++++|||++++.+|+.+.. |+..+...  ..+.|+++|+||+|+.......+              ..+
T Consensus        64 l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  141 (189)
T cd04134          64 LRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLA  141 (189)
T ss_pred             cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHH
Confidence            67889999999999999999999998864 55555433  24689999999999865322111              111


Q ss_pred             HhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ...    ....++++++||++|.|++++|+++++.+.
T Consensus       142 ~~~----~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~  174 (189)
T cd04134         142 VAK----RINALRYLECSAKLNRGVNEAFTEAARVAL  174 (189)
T ss_pred             HHH----HcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence            111    112368999999999999999999998775

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.78  E-value=4.3e-18  Score=98.43  Aligned_cols=96  Identities=16%  Similarity=0.219  Sum_probs=74.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+.+.....+.|+++++||+|+....  ...+..+...     ..+.+
T Consensus        66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~  140 (164)
T cd04145          66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-----KLKIP  140 (164)
T ss_pred             HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-----HcCCc
Confidence            5788999999999999999999999988887776654333578999999999986432  2233333221     23458


Q ss_pred             EEEccccCCCChHHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++++||++|.|++++|+++.+.+
T Consensus       141 ~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         141 YIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHhh
Confidence            99999999999999999998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04128 Spg1 Spg1p

Probab=99.78  E-value=3.5e-18  Score=100.89  Aligned_cols=95  Identities=9%  Similarity=0.064  Sum_probs=71.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-------HHHHHHHhCCCCcC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-------VAEVHRALGLENLK   74 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-------~~~~~~~~~~~~~~   74 (106)
                      +|+.|++++|++++|||++++.+++++..|+....+.. ....| ++|+||+|+.....       ..+..+..     +
T Consensus        65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a-----~  137 (182)
T cd04128          65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYA-----K  137 (182)
T ss_pred             hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHH-----H
Confidence            68889999999999999999999999988887765532 23456 67899999853211       11111111     2


Q ss_pred             CCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         75 DRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        75 ~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ..+.+++++||++|.|++++|+++.+.+.
T Consensus       138 ~~~~~~~e~SAk~g~~v~~lf~~l~~~l~  166 (182)
T cd04128         138 AMKAPLIFCSTSHSINVQKIFKIVLAKAF  166 (182)
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            23468999999999999999999998764

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01865 Rab3 Rab3 subfamily

Probab=99.78  E-value=7.9e-18  Score=97.75  Aligned_cols=97  Identities=18%  Similarity=0.267  Sum_probs=75.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.+++.+..|+..+... ...+.|+++++||+|+.+..  ...+..+...     ..+++
T Consensus        66 ~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  139 (165)
T cd01865          66 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLAD-----QLGFE  139 (165)
T ss_pred             HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCE
Confidence            5788999999999999999999999998877665433 22468999999999986432  2233333221     22458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+..
T Consensus       140 ~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         140 FFEASAKENINVKQVFERLVDIICD  164 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999988754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.77  E-value=4.3e-18  Score=98.57  Aligned_cols=98  Identities=20%  Similarity=0.250  Sum_probs=75.8

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.+++.+..|...+.......+.|+++++||+|+...  ....+..+...     ..+.+
T Consensus        64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  138 (164)
T smart00173       64 MRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR-----QWGCP  138 (164)
T ss_pred             HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH-----HcCCE
Confidence            578899999999999999999999988877766655433357899999999998643  22233333322     22468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+.+
T Consensus       139 ~~~~Sa~~~~~i~~l~~~l~~~~~~  163 (164)
T smart00173      139 FLETSAKERVNVDEAFYDLVREIRK  163 (164)
T ss_pred             EEEeecCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999988764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG0093|consensus

Probab=99.77  E-value=1.8e-18  Score=97.00  Aligned_cols=96  Identities=19%  Similarity=0.310  Sum_probs=75.9

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEEE
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      ..||++++++|++||.++.++|..+..|....- +....+.|+++|+||||+.++  ...+...+...     ..+++||
T Consensus        88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~eRvis~e~g~~l~~-----~LGfefF  161 (193)
T KOG0093|consen   88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSERVISHERGRQLAD-----QLGFEFF  161 (193)
T ss_pred             HHHhhccceEEEEEecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccceeeeHHHHHHHHH-----HhChHHh
Confidence            468999999999999999999999998876654 334468999999999998654  23333333332     2356899


Q ss_pred             EccccCCCChHHHHHHHHHHHhhc
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++||+++.|++++|+.+...+.++
T Consensus       162 EtSaK~NinVk~~Fe~lv~~Ic~k  185 (193)
T KOG0093|consen  162 ETSAKENINVKQVFERLVDIICDK  185 (193)
T ss_pred             hhcccccccHHHHHHHHHHHHHHH
Confidence            999999999999999999888654

>cd04117 Rab15 Rab15 subfamily

Probab=99.77  E-value=5e-18  Score=98.34  Aligned_cols=94  Identities=17%  Similarity=0.191  Sum_probs=73.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|||++++.+++++..|+...... ...+.|+++++||.|+.+..  ...+.....     +..+.+
T Consensus        65 ~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~  138 (161)
T cd04117          65 ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLA-----KEYGMD  138 (161)
T ss_pred             hHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCE
Confidence            5788999999999999999999999998877765443 22468999999999986432  233333332     223468


Q ss_pred             EEEccccCCCChHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      ++++||++|.|++++|.+|.+.
T Consensus       139 ~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         139 FFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             EEEEeCCCCCCHHHHHHHHHhh
Confidence            9999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.77  E-value=1.1e-17  Score=96.92  Aligned_cols=97  Identities=27%  Similarity=0.392  Sum_probs=75.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC----CCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE----LRDAILVILANKQDMKN--CMSVAEVHRALGLENLKD   75 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~   75 (106)
                      +|+.+++++|++++|+|++++.++..+..|+..+.....    ..+.|+++|+||+|+.+  .....+......     .
T Consensus        65 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~  139 (168)
T cd04119          65 VRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-----S  139 (168)
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-----H
Confidence            577899999999999999999999988887777665432    24689999999999863  223333333321     2


Q ss_pred             CceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         76 RTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .+++++++||++|.|++++|+++.+.+.
T Consensus       140 ~~~~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         140 KGFKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3468999999999999999999998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.77  E-value=7.9e-18  Score=98.38  Aligned_cols=98  Identities=19%  Similarity=0.271  Sum_probs=74.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCcCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENLKDRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~   77 (106)
                      +|..+++++|++++|+|++++.++..+..|+..+.+.....+.|+++|+||+|+.+...    ..+.....     ...+
T Consensus        65 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~-----~~~~  139 (170)
T cd04108          65 IASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA-----AEMQ  139 (170)
T ss_pred             hHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH-----HHcC
Confidence            67889999999999999999999999888887766543334578999999999854321    11111221     1123


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .+++++||++|.|++++|+.+++.+.+
T Consensus       140 ~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         140 AEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999987753

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>KOG0098|consensus

Probab=99.77  E-value=2.9e-18  Score=99.40  Aligned_cols=97  Identities=18%  Similarity=0.272  Sum_probs=80.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +-+.||+++-++++|||++++.+|..+..|+.+..++. ..+..+++++||+|+...  ...++.....     +..++.
T Consensus        71 v~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA-----~ehgLi  144 (216)
T KOG0098|consen   71 VTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFA-----REHGLI  144 (216)
T ss_pred             HHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHH-----HHcCce
Confidence            45789999999999999999999999999999987764 267899999999998653  3444555444     346788


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++++|++++|......+.+
T Consensus       145 fmETSakt~~~VEEaF~nta~~Iy~  169 (216)
T KOG0098|consen  145 FMETSAKTAENVEEAFINTAKEIYR  169 (216)
T ss_pred             eehhhhhhhhhHHHHHHHHHHHHHH
Confidence            9999999999999999988877654

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.76  E-value=1.5e-17  Score=96.52  Aligned_cols=97  Identities=19%  Similarity=0.282  Sum_probs=75.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.++..+..|+...... ...+.|+++++||+|+...  ....+......     ..+++
T Consensus        67 ~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  140 (166)
T cd01869          67 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIP  140 (166)
T ss_pred             HHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHH-----HcCCe
Confidence            5778999999999999999999999998877665443 2246899999999998543  22333333322     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+.+
T Consensus       141 ~~~~Sa~~~~~v~~~~~~i~~~~~~  165 (166)
T cd01869         141 FLETSAKNATNVEQAFMTMAREIKK  165 (166)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHh
Confidence            9999999999999999999988764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.76  E-value=1.7e-17  Score=102.04  Aligned_cols=97  Identities=23%  Similarity=0.219  Sum_probs=76.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc--------CCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE--------ELRDAILVILANKQDMKN--CMSVAEVHRALGLE   71 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~   71 (106)
                      ++..++.++|++|+|||++++.+|+.+..|+.++....        ...+.|+++++||+|+..  .....++.+.++  
T Consensus        64 ~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~--  141 (247)
T cd04143          64 MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVG--  141 (247)
T ss_pred             HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHH--
Confidence            46678999999999999999999999888777765421        224689999999999864  344556666554  


Q ss_pred             CcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         72 NLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        72 ~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                        ....+.++++||++|.|++++|++|++..
T Consensus       142 --~~~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         142 --GDENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             --hcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence              22356899999999999999999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04155 Arl3 Arl3 subfamily

Probab=99.76  E-value=2.3e-17  Score=96.25  Aligned_cols=99  Identities=43%  Similarity=0.826  Sum_probs=79.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      .|..+++++|++++|+|.++..++.....++...+......+.|+++++||+|+.+.....++.+.++........++++
T Consensus        74 ~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~  153 (173)
T cd04155          74 YWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQ  153 (173)
T ss_pred             HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEE
Confidence            47788999999999999998888887777776766554445789999999999876555666777666544444556789


Q ss_pred             EccccCCCChHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~  100 (106)
                      ++||++|+|++++++||++
T Consensus       154 ~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         154 ACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EeECCCCCCHHHHHHHHhc
Confidence            9999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.76  E-value=3.6e-17  Score=93.70  Aligned_cols=99  Identities=32%  Similarity=0.616  Sum_probs=78.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|..+++++|++++|+|++++.++.....++..+.......++|+++++||+|+.+.....++.+.++........++++
T Consensus        60 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (159)
T cd04159          60 MWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCY  139 (159)
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEE
Confidence            57889999999999999998888887777777776654446789999999999876555555555554333333457899


Q ss_pred             EccccCCCChHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~  100 (106)
                      ++|+++|.|++++++++.+
T Consensus       140 ~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         140 SISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             EEEeccCCChHHHHHHHhh
Confidence            9999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04142 RRP22 RRP22 subfamily

Probab=99.76  E-value=2.2e-17  Score=98.71  Aligned_cols=96  Identities=18%  Similarity=0.087  Sum_probs=72.4

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc--CCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE--ELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      .+++++|++++|||++++.+++.+..|+..+....  ...+.|+++++||+|+....  ...+..+...    +..++++
T Consensus        76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~  151 (198)
T cd04142          76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCGY  151 (198)
T ss_pred             hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCcE
Confidence            45789999999999999999998887776665543  13568999999999985431  2222222222    2245789


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++||++|.|++++|+.+++.+..
T Consensus       152 ~e~Sak~g~~v~~lf~~i~~~~~~  175 (198)
T cd04142         152 LECSAKYNWHILLLFKELLISATT  175 (198)
T ss_pred             EEecCCCCCCHHHHHHHHHHHhhc
Confidence            999999999999999999977653

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04116 Rab9 Rab9 subfamily

Probab=99.76  E-value=1.9e-17  Score=96.41  Aligned_cols=96  Identities=16%  Similarity=0.214  Sum_probs=74.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC---CCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE---LRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~   77 (106)
                      +|..|++++|++++|||++++.+++.+..|...+.....   ..+.|+++++||+|+... ....++.+...    ....
T Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~  145 (170)
T cd04116          70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGD  145 (170)
T ss_pred             hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCC
Confidence            678899999999999999999999988887766654322   245899999999998642 34444544443    1123


Q ss_pred             eEEEEccccCCCChHHHHHHHHHH
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      .+++++||++|.|+.++|+++++.
T Consensus       146 ~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         146 YPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            479999999999999999999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.75  E-value=2.7e-17  Score=99.74  Aligned_cols=97  Identities=16%  Similarity=0.162  Sum_probs=70.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--------------CHHHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--------------SVAEVHRA   67 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------------~~~~~~~~   67 (106)
                      +++.||+++|++++|||++++.+|+.+..+|....... ..+.|+++|+||+|+....              ...+....
T Consensus        65 l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~  143 (222)
T cd04173          65 VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVL  143 (222)
T ss_pred             HhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHH
Confidence            57889999999999999999999999865454433322 2468999999999985421              11111111


Q ss_pred             hCCCCcCCCc-eEEEEccccCCCC-hHHHHHHHHHHHhh
Q psy12794         68 LGLENLKDRT-FQIFKTSAKEGEG-LNDSMDWLSNALQK  104 (106)
Q Consensus        68 ~~~~~~~~~~-~~~~~~sa~~~~~-v~~~~~~l~~~~~~  104 (106)
                      .     +..+ .+|++|||+++.| |.++|+.+......
T Consensus       144 a-----k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~  177 (222)
T cd04173         144 A-----KQVGAVSYVECSSRSSERSVRDVFHVATVASLG  177 (222)
T ss_pred             H-----HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence            1     2234 4899999999885 99999998876543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04112 Rab26 Rab26 subfamily

Probab=99.75  E-value=3.3e-17  Score=97.32  Aligned_cols=97  Identities=20%  Similarity=0.315  Sum_probs=74.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.+++.+..|+..+... ...+.|+++++||+|+...  ....+.....     ...+.+
T Consensus        66 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~  139 (191)
T cd04112          66 VTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVP  139 (191)
T ss_pred             hhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCe
Confidence            4678899999999999999999999888877665543 2246899999999998532  2223333322     123468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++++.+.+
T Consensus       140 ~~e~Sa~~~~~v~~l~~~l~~~~~~  164 (191)
T cd04112         140 FMETSAKTGLNVELAFTAVAKELKH  164 (191)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999988764

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04124 RabL2 RabL2 subfamily

Probab=99.75  E-value=2.8e-17  Score=95.20  Aligned_cols=97  Identities=13%  Similarity=0.143  Sum_probs=73.9

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++|+.|++++|++++|+|++++.+++++..|+..+.+.  ..+.|+++++||+|+.... ..+..+..     ...++++
T Consensus        64 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~~~-----~~~~~~~  135 (161)
T cd04124          64 TMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFNFA-----EKHNLPL  135 (161)
T ss_pred             hhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHHHH-----HHcCCeE
Confidence            36889999999999999999999998888777666443  2468999999999984321 11111111     1234689


Q ss_pred             EEccccCCCChHHHHHHHHHHHhhc
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++||++|.|++++|+.+.+.+.++
T Consensus       136 ~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         136 YYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999887654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.75  E-value=1.3e-17  Score=97.26  Aligned_cols=97  Identities=18%  Similarity=0.280  Sum_probs=75.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++.....|+..+.......+.|+++++||+|+....  ...+..+..     ....++
T Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~  142 (170)
T cd04115          68 MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA-----DAHSMP  142 (170)
T ss_pred             hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH-----HHcCCc
Confidence            5788999999999999999999999998877666554334579999999999986432  222222222     223478


Q ss_pred             EEEccccC---CCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKE---GEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~---~~~v~~~~~~l~~~~~  103 (106)
                      ++++||++   +.|++++|..+++.++
T Consensus       143 ~~e~Sa~~~~~~~~i~~~f~~l~~~~~  169 (170)
T cd04115         143 LFETSAKDPSENDHVEAIFMTLAHKLK  169 (170)
T ss_pred             EEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence            99999999   8999999999988764

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>KOG0394|consensus

Probab=99.75  E-value=2.2e-17  Score=95.62  Aligned_cols=97  Identities=19%  Similarity=0.228  Sum_probs=79.4

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCC---CCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELR---DAILVILANKQDMKNC----MSVAEVHRALGLENLKD   75 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~   75 (106)
                      -..+|+++|.++++||++++.+|+.+..|..+++......   .=|++|+|||+|+.++    .+.....++.+    ..
T Consensus        75 g~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~----s~  150 (210)
T KOG0394|consen   75 GVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK----SK  150 (210)
T ss_pred             ccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH----hc
Confidence            3458999999999999999999999999999988754432   2499999999998653    34455566655    45


Q ss_pred             CceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         76 RTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .+++||++|||+..||++.|+.+.+...
T Consensus       151 gnipyfEtSAK~~~NV~~AFe~ia~~aL  178 (210)
T KOG0394|consen  151 GNIPYFETSAKEATNVDEAFEEIARRAL  178 (210)
T ss_pred             CCceeEEecccccccHHHHHHHHHHHHH
Confidence            6899999999999999999999987654

>cd04110 Rab35 Rab35 subfamily

Probab=99.75  E-value=4.2e-17  Score=97.46  Aligned_cols=96  Identities=21%  Similarity=0.306  Sum_probs=75.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|+++++++++|+|++++.++..+..|+..+....  ...|+++|+||+|+...  ....+..+...     ..+++
T Consensus        71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-----~~~~~  143 (199)
T cd04110          71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAG-----QMGIS  143 (199)
T ss_pred             HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCE
Confidence            57889999999999999999999999988877665432  46899999999998653  23333333322     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+..
T Consensus       144 ~~e~Sa~~~~gi~~lf~~l~~~~~~  168 (199)
T cd04110         144 LFETSAKENINVEEMFNCITELVLR  168 (199)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999987653

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.75  E-value=3e-17  Score=95.87  Aligned_cols=96  Identities=15%  Similarity=0.132  Sum_probs=70.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--------------HHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMS--------------VAEVHR   66 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--------------~~~~~~   66 (106)
                      +++.+++++|++++|||++++.+++.+.. |+......  ..+.|+++|+||+|+.....              ..+..+
T Consensus        62 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  139 (174)
T smart00174       62 LRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEA  139 (174)
T ss_pred             hchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHH
Confidence            56778999999999999999999998864 55544332  24799999999999864221              111111


Q ss_pred             HhCCCCcCCCc-eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         67 ALGLENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        67 ~~~~~~~~~~~-~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ..     +..+ .+++++||++|.|++++|+.+.+.+..
T Consensus       140 ~~-----~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      140 LA-----KRIGAVKYLECSALTQEGVREVFEEAIRAALN  173 (174)
T ss_pred             HH-----HHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence            11     1223 489999999999999999999987643

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04125 RabA_like RabA-like subfamily

Probab=99.74  E-value=3.1e-17  Score=97.13  Aligned_cols=98  Identities=21%  Similarity=0.250  Sum_probs=75.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|||++++.++..+..|+....... ..+.|+++++||+|+.+..  .........     ...+++
T Consensus        65 ~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~  138 (188)
T cd04125          65 LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC-----DSLNIP  138 (188)
T ss_pred             hHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH-----HHcCCe
Confidence            57889999999999999999999999988776655432 2458999999999986432  222322222     123458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++||++|.|++++|+++.+.+.++
T Consensus       139 ~~evSa~~~~~i~~~f~~l~~~~~~~  164 (188)
T cd04125         139 FFETSAKQSINVEEAFILLVKLIIKR  164 (188)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999887643

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0088|consensus

Probab=99.74  E-value=8.2e-18  Score=95.50  Aligned_cols=96  Identities=22%  Similarity=0.299  Sum_probs=76.8

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      -+-||++++++++|||++++++|..+..|+.++.+..+ ....+++|+||+|+.+.  ....+...+.     +.-+..+
T Consensus        79 GPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe~YA-----esvGA~y  152 (218)
T KOG0088|consen   79 GPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAEAYA-----ESVGALY  152 (218)
T ss_pred             CceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHHHHH-----Hhhchhh
Confidence            35699999999999999999999999999988765433 56899999999998653  2333444333     3345679


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .++||+.+.||.++|+.|...+.+
T Consensus       153 ~eTSAk~N~Gi~elFe~Lt~~MiE  176 (218)
T KOG0088|consen  153 METSAKDNVGISELFESLTAKMIE  176 (218)
T ss_pred             eecccccccCHHHHHHHHHHHHHH
Confidence            999999999999999999877654

>cd04140 ARHI_like ARHI subfamily

Probab=99.74  E-value=2.1e-17  Score=95.97  Aligned_cols=95  Identities=18%  Similarity=0.167  Sum_probs=70.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC--cCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~   77 (106)
                      ++..+++++|++++|+|++++.+++.+..|+..+...  ....+.|+++|+||+|+...  ....+.....     ...+
T Consensus        65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~  139 (165)
T cd04140          65 MQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACA-----TEWN  139 (165)
T ss_pred             HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHH-----HHhC
Confidence            5677899999999999999999999888766544321  11246899999999998642  2222222222     1234


Q ss_pred             eEEEEccccCCCChHHHHHHHHHH
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      ++++++||++|.|++++|++|.+.
T Consensus       140 ~~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         140 CAFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             CcEEEeecCCCCCHHHHHHHHHhc
Confidence            689999999999999999999864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01868 Rab11_like Rab11-like

Probab=99.74  E-value=6.7e-17  Score=93.69  Aligned_cols=95  Identities=15%  Similarity=0.278  Sum_probs=74.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|+.++++++++++|+|++++.++..+..|+..+.... ..+.|+++++||+|+...  ....+......     ..+++
T Consensus        68 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  141 (165)
T cd01868          68 ITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLS  141 (165)
T ss_pred             HHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCE
Confidence            57788999999999999999999999988877665542 235899999999998642  23333333332     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++++||++|.|++++++++...+
T Consensus       142 ~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         142 FIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.74  E-value=5.3e-17  Score=95.96  Aligned_cols=96  Identities=11%  Similarity=0.123  Sum_probs=71.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcC------CHHHHHHHhCCCCcC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCM------SVAEVHRALGLENLK   74 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------~~~~~~~~~~~~~~~   74 (106)
                      +|+.+++++|++++|+|++++.+++.+.. |+......  ..+.|+++++||.|+....      ...+..+...     
T Consensus        65 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-----  137 (187)
T cd04132          65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK-----  137 (187)
T ss_pred             HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH-----
Confidence            56778999999999999999999998864 44444322  2468999999999985421      2333333322     


Q ss_pred             CCce-EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         75 DRTF-QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        75 ~~~~-~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ..+. +++++||++|.|++++|..+++.+.+
T Consensus       138 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  168 (187)
T cd04132         138 KQGAFAYLECSAKTMENVEEVFDTAIEEALK  168 (187)
T ss_pred             HcCCcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence            1233 89999999999999999999987754

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01863 Rab18 Rab18 subfamily

Probab=99.74  E-value=3.6e-17  Score=94.44  Aligned_cols=95  Identities=21%  Similarity=0.272  Sum_probs=74.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++..+++++|++++|+|++++.++..+..|+..........+.|+++++||+|+... ....+..+...     ..++++
T Consensus        65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~  139 (161)
T cd01863          65 LTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLF  139 (161)
T ss_pred             hhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEE
Confidence            467789999999999999999999988887766655544467999999999998632 23334333332     235689


Q ss_pred             EEccccCCCChHHHHHHHHHH
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      +++||++|.|++++++.+.+.
T Consensus       140 ~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         140 IETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             EEEecCCCCCHHHHHHHHHHh
Confidence            999999999999999998765

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01864 Rab19 Rab19 subfamily

Probab=99.74  E-value=6.3e-17  Score=93.90  Aligned_cols=95  Identities=18%  Similarity=0.287  Sum_probs=72.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.++..+..|+....... ..+.|+++|+||+|+...  ....+..+...    ......
T Consensus        68 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~  142 (165)
T cd01864          68 ITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLA  142 (165)
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcE
Confidence            57789999999999999999999998888777665432 246899999999998643  22233333322    112347


Q ss_pred             EEEccccCCCChHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      ++++||++|.|++++++++.+.
T Consensus       143 ~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         143 VLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            8999999999999999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03108 Rab family protein; Provisional

Probab=99.73  E-value=8.4e-17  Score=96.92  Aligned_cols=97  Identities=16%  Similarity=0.230  Sum_probs=75.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.++..+..|+....... ..+.|+++++||+|+...  ....+..+...     ..+++
T Consensus        71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  144 (210)
T PLN03108         71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLI  144 (210)
T ss_pred             HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHH-----HcCCE
Confidence            57789999999999999999999998887776654432 246899999999998653  23344444332     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||+++.|++++|+++++.+.+
T Consensus       145 ~~e~Sa~~~~~v~e~f~~l~~~~~~  169 (210)
T PLN03108        145 FMEASAKTAQNVEEAFIKTAAKIYK  169 (210)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987754

>cd01862 Rab7 Rab7 subfamily

Probab=99.73  E-value=1.3e-16  Score=92.88  Aligned_cols=100  Identities=17%  Similarity=0.233  Sum_probs=75.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC---CCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE---LRDAILVILANKQDMKN--CMSVAEVHRALGLENLKDR   76 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~   76 (106)
                      +|..+++++|++++++|++++.++.....|...++....   ..+.|+++++||+|+..  .....+......    ...
T Consensus        65 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~  140 (172)
T cd01862          65 LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNG  140 (172)
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcC
Confidence            588899999999999999998888887766655544322   23689999999999863  223444444332    122


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ..+++++||++|.|++++++++.+.+.++
T Consensus       141 ~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         141 NIPYFETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            36899999999999999999999877543

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01866 Rab2 Rab2 subfamily

Probab=99.73  E-value=1.2e-16  Score=93.13  Aligned_cols=97  Identities=16%  Similarity=0.227  Sum_probs=76.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++..+++++|++++|+|++++.++..+..|+.+..... ..+.|+++++||.|+...  ....+......     ..+++
T Consensus        69 ~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  142 (168)
T cd01866          69 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLI  142 (168)
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCE
Confidence            46778999999999999999999999988887765542 246899999999998632  23444444432     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||+++.|++++|.++.+.+.+
T Consensus       143 ~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         143 FMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.73  E-value=8.2e-17  Score=96.12  Aligned_cols=98  Identities=18%  Similarity=0.175  Sum_probs=74.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc---CCHHHHHHHhCCCCcCCCce
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC---MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~   78 (106)
                      +|+.|++++|++++|+|++++.+++.+..++..+.......+.|+++++||+|+...   .......+...    ...+.
T Consensus        63 ~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~  138 (198)
T cd04147          63 MRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNC  138 (198)
T ss_pred             HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCC
Confidence            577889999999999999999999988877777666443357999999999998542   11222222221    12245


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++++||++|.|++++|+++.+.+.
T Consensus       139 ~~~~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         139 GFVETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             cEEEecCCCCCCHHHHHHHHHHHhh
Confidence            7899999999999999999998764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0080|consensus

Probab=99.73  E-value=3.1e-18  Score=97.33  Aligned_cols=98  Identities=20%  Similarity=0.189  Sum_probs=78.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +-+.||+++.++|+|||++++++|..+..|+.++-......++-.++|+||+|..+.  .+.++-....     +..++-
T Consensus        76 LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfA-----r~h~~L  150 (209)
T KOG0080|consen   76 LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFA-----RKHRCL  150 (209)
T ss_pred             cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHH-----HhhCcE
Confidence            457899999999999999999999999988877665544467888999999996422  2333333333     456778


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      |++|||++.+||...|+.|+..+.+
T Consensus       151 FiE~SAkt~~~V~~~FeelveKIi~  175 (209)
T KOG0080|consen  151 FIECSAKTRENVQCCFEELVEKIIE  175 (209)
T ss_pred             EEEcchhhhccHHHHHHHHHHHHhc
Confidence            9999999999999999999987753

>KOG0074|consensus

Probab=99.73  E-value=7.5e-18  Score=93.98  Aligned_cols=102  Identities=41%  Similarity=0.714  Sum_probs=90.5

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      |+|.+||.++|++|+|+|.+++..|+++.+.+.+++....+...|+++..||.|+..+...+++...+....++.+.+++
T Consensus        77 pyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhI  156 (185)
T KOG0074|consen   77 PYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHI  156 (185)
T ss_pred             hhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEe
Confidence            68999999999999999999999999999989898888777889999999999988777777788777776667788999


Q ss_pred             EEccccCCCChHHHHHHHHHHH
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      -+|||.+++|+.+..+|++...
T Consensus       157 q~csals~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  157 QECSALSLEGSTDGSDWVQSNP  178 (185)
T ss_pred             eeCccccccCccCcchhhhcCC
Confidence            9999999999999999887543

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.72  E-value=1.5e-16  Score=91.88  Aligned_cols=98  Identities=19%  Similarity=0.336  Sum_probs=76.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++++||+|+...  .....+.+...     ..+++
T Consensus        65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~  138 (164)
T smart00175       65 ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAE-----EHGLP  138 (164)
T ss_pred             HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHH-----HcCCe
Confidence            467789999999999999999999988887766655432 47999999999998652  23333433322     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++||+++.|++++++++.+.+.++
T Consensus       139 ~~e~Sa~~~~~i~~l~~~i~~~~~~~  164 (164)
T smart00175      139 FFETSAKTNTNVEEAFEELAREILKR  164 (164)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999988653

Rab GTPases are implicated in vesicle trafficking.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.72  E-value=1e-16  Score=92.55  Aligned_cols=93  Identities=19%  Similarity=0.310  Sum_probs=72.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+...  ..+.|+++++||+|+...  ....+..+...     ..+++
T Consensus        67 ~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~  139 (162)
T cd04106          67 ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAK-----RLQLP  139 (162)
T ss_pred             hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHH-----HcCCe
Confidence            5788999999999999999999999888877665443  247899999999998643  23333333332     23458


Q ss_pred             EEEccccCCCChHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      ++++||+++.|++++++++.+.
T Consensus       140 ~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         140 LFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            9999999999999999999764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.72  E-value=8.4e-17  Score=93.13  Aligned_cols=94  Identities=20%  Similarity=0.312  Sum_probs=72.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.++..+..|+..+....  .+.|+++|+||+|+.+..  ...+... +.    ...+++
T Consensus        68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~  140 (164)
T cd04101          68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQA-FA----QANQLK  140 (164)
T ss_pred             HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHH-HH----HHcCCe
Confidence            57889999999999999999999988887776655442  468999999999985432  2222222 21    123468


Q ss_pred             EEEccccCCCChHHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++++||+++.|++++|+.+++.+
T Consensus       141 ~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         141 FFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             EEEEeCCCCCChHHHHHHHHHHh
Confidence            99999999999999999998864

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PLN03110 Rab GTPase; Provisional

Probab=99.72  E-value=7.4e-17  Score=97.54  Aligned_cols=97  Identities=15%  Similarity=0.240  Sum_probs=74.8

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|+++++++++|+|++++.+++.+..|+..+.... ..+.|+++++||+|+....  ..... ..+.    ...+++
T Consensus        77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~-~~l~----~~~~~~  150 (216)
T PLN03110         77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDG-QALA----EKEGLS  150 (216)
T ss_pred             HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHH-HHHH----HHcCCE
Confidence            57889999999999999999999999888776654432 2468999999999985432  22222 2222    224578


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++...+.+
T Consensus       151 ~~e~SA~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        151 FLETSALEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987754

>cd01892 Miro2 Miro2 subfamily

Probab=99.72  E-value=1.4e-16  Score=92.95  Aligned_cols=93  Identities=24%  Similarity=0.203  Sum_probs=69.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-----CHHHHHHHhCCCCcCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-----SVAEVHRALGLENLKDR   76 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~   76 (106)
                      +|..||+++|++++|+|.+++.+++.+..++..+...   .+.|+++|+||+|+.+..     ...++.+.++.      
T Consensus        70 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~------  140 (169)
T cd01892          70 LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL------  140 (169)
T ss_pred             cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCC------
Confidence            5778899999999999999998888877666543222   468999999999985432     11223332221      


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                       ..++++||++|.|++++|+.+++.+..
T Consensus       141 -~~~~~~Sa~~~~~v~~lf~~l~~~~~~  167 (169)
T cd01892         141 -PPPLHFSSKLGDSSNELFTKLATAAQY  167 (169)
T ss_pred             -CCCEEEEeccCccHHHHHHHHHHHhhC
Confidence             135899999999999999999987653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04113 Rab4 Rab4 subfamily

Probab=99.72  E-value=1.5e-16  Score=91.87  Aligned_cols=94  Identities=18%  Similarity=0.267  Sum_probs=73.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|+.+++++|++++|+|++++.++..+..|+....... ..+.|+++++||+|+...  ....++.....     ..+++
T Consensus        65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~  138 (161)
T cd04113          65 VTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLL  138 (161)
T ss_pred             hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCE
Confidence            57889999999999999999999999888776654322 257899999999998643  23334444332     23478


Q ss_pred             EEEccccCCCChHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      ++++||+++.|++++|+++++.
T Consensus       139 ~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         139 FLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            9999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04177 RSR1 RSR1 subgroup

Probab=99.72  E-value=2e-16  Score=92.09  Aligned_cols=99  Identities=13%  Similarity=0.156  Sum_probs=74.8

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|+.++++++++++|+|++++.+++....|...........+.|+++++||.|+....  ...+......    .....
T Consensus        64 ~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~  139 (168)
T cd04177          64 AMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ----QWGNV  139 (168)
T ss_pred             hhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH----HcCCc
Confidence            36888999999999999999999999888776666543333578999999999985432  2222222221    11236


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++++||+++.|++++|+++.+++.
T Consensus       140 ~~~~~SA~~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         140 PFYETSARKRTNVDEVFIDLVRQII  164 (168)
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            8999999999999999999998764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.72  E-value=1.4e-16  Score=92.40  Aligned_cols=97  Identities=16%  Similarity=0.218  Sum_probs=71.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC-CCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE-LRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      .+..+++++|++++|+|++++.+++.+..|+..+..... ..+.|+++|+||+|+...  ....+..+...     ..+.
T Consensus        64 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~  138 (165)
T cd04146          64 QLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-----ELGC  138 (165)
T ss_pred             hHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-----HcCC
Confidence            356789999999999999999999988776654443221 246899999999998532  22223222221     1235


Q ss_pred             EEEEccccCC-CChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEG-EGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~-~~v~~~~~~l~~~~~  103 (106)
                      +++++||++| .|++++|+++++.+.
T Consensus       139 ~~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         139 LFFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             EEEEeCCCCCchhHHHHHHHHHHHHh
Confidence            8999999999 599999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.71  E-value=1.3e-16  Score=92.10  Aligned_cols=98  Identities=16%  Similarity=0.211  Sum_probs=75.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++..++++++++++++|++++.++.....++..+.......+.|+++++||+|+.+.  ....+......     ..+.+
T Consensus        64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-----~~~~~  138 (164)
T cd04139          64 IRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-----QWGVP  138 (164)
T ss_pred             HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCe
Confidence            467789999999999999999999888888777776543457999999999998652  22222222221     12458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++++|++++|+++.+.+.+
T Consensus       139 ~~~~Sa~~~~gi~~l~~~l~~~~~~  163 (164)
T cd04139         139 YVETSAKTRQNVEKAFYDLVREIRQ  163 (164)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999987754

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0091|consensus

Probab=99.71  E-value=1.2e-16  Score=91.09  Aligned_cols=98  Identities=16%  Similarity=0.339  Sum_probs=79.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC-CCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE-LRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      +-.+||+|+=++++|||.+++.+|+.+..|+.+...+.. ..++-+++|+.|+|+.++  .+.++.....     ...++
T Consensus        74 itksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklA-----a~hgM  148 (213)
T KOG0091|consen   74 ITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLA-----ASHGM  148 (213)
T ss_pred             HHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHH-----HhcCc
Confidence            456899999999999999999999999999988766544 334677899999999754  3334444433     45678


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .|+++||++|.||++.|..|.+.+-.
T Consensus       149 ~FVETSak~g~NVeEAF~mlaqeIf~  174 (213)
T KOG0091|consen  149 AFVETSAKNGCNVEEAFDMLAQEIFQ  174 (213)
T ss_pred             eEEEecccCCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999987643

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.71  E-value=2.9e-16  Score=90.74  Aligned_cols=95  Identities=23%  Similarity=0.367  Sum_probs=74.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      .|..+++++|++++|+|++++.++.....|+..+..... .+.|+++++||+|+...  ....+..+...     ..++.
T Consensus        66 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~  139 (163)
T cd01860          66 LAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLL  139 (163)
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCE
Confidence            577899999999999999999999988887777665532 56899999999998632  23333333332     12368


Q ss_pred             EEEccccCCCChHHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++++||++|.|+.++++++.+.+
T Consensus       140 ~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         140 FFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            99999999999999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01861 Rab6 Rab6 subfamily

Probab=99.71  E-value=1.3e-16  Score=91.97  Aligned_cols=94  Identities=20%  Similarity=0.316  Sum_probs=73.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.++..+..++..+..... .+.|+++++||+|+...  ....+......     ..+.+
T Consensus        65 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~  138 (161)
T cd01861          65 LIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAM  138 (161)
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCE
Confidence            577889999999999999999999999888877655432 36899999999998432  23333333322     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      ++++||+++.|++++++++.+.
T Consensus       139 ~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         139 FIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHh
Confidence            9999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04135 Tc10 TC10 subfamily

Probab=99.71  E-value=2e-16  Score=92.43  Aligned_cols=96  Identities=17%  Similarity=0.152  Sum_probs=68.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH--------------HHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV--------------AEVHRA   67 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------------~~~~~~   67 (106)
                      +|..+++++|++++|+|++++.+++.+...+...+... ..+.|+++++||+|+.+....              .+....
T Consensus        64 ~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  142 (174)
T cd04135          64 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKL  142 (174)
T ss_pred             cccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence            56778999999999999999999988864344434332 357999999999998543211              111111


Q ss_pred             hCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         68 LGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        68 ~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ..    .....++++|||++|.|++++|+.+++.+
T Consensus       143 ~~----~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         143 AK----EIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             HH----HcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            11    11123799999999999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04123 Rab21 Rab21 subfamily

Probab=99.71  E-value=3.6e-16  Score=90.04  Aligned_cols=95  Identities=26%  Similarity=0.338  Sum_probs=73.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|+.+++++|++++|+|++++.++.....|+.++..... .+.|+++++||+|+...  ....++.+...     ..+.+
T Consensus        65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~  138 (162)
T cd04123          65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAK  138 (162)
T ss_pred             hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCE
Confidence            578889999999999999999999888877666554322 36899999999998643  23334443332     23467


Q ss_pred             EEEccccCCCChHHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++++||+++.|++++++++.+.+
T Consensus       139 ~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         139 HFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            89999999999999999998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>KOG0087|consensus

Probab=99.71  E-value=1e-16  Score=94.56  Aligned_cols=96  Identities=14%  Similarity=0.265  Sum_probs=76.7

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      -..||+.+.++++|||++...+|+.+.+|+.++..+.. .+.++++||||+||...  ...++.....     +..++.+
T Consensus        80 tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k~~A-----e~~~l~f  153 (222)
T KOG0087|consen   80 TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFA-----EKEGLFF  153 (222)
T ss_pred             cchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhHhHH-----HhcCceE
Confidence            45799999999999999999999999999998877644 57999999999998642  1222222222     4456799


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++||.++.|+++.|+.+...+-+
T Consensus       154 ~EtSAl~~tNVe~aF~~~l~~I~~  177 (222)
T KOG0087|consen  154 LETSALDATNVEKAFERVLTEIYK  177 (222)
T ss_pred             EEecccccccHHHHHHHHHHHHHH
Confidence            999999999999999988877643

>cd04118 Rab24 Rab24 subfamily

Probab=99.70  E-value=5.6e-16  Score=92.00  Aligned_cols=96  Identities=18%  Similarity=0.220  Sum_probs=72.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC------CHHHHHHHhCCCCcCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM------SVAEVHRALGLENLKD   75 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------~~~~~~~~~~~~~~~~   75 (106)
                      +|..+++++|++++|||++++.+++.+..|+..+...  ..+.|+++|+||+|+.+..      ...++.+..     ..
T Consensus        66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~-----~~  138 (193)
T cd04118          66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFA-----DE  138 (193)
T ss_pred             hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHH-----HH
Confidence            5778899999999999999999998887777665443  1368999999999985321      112222222     12


Q ss_pred             CceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         76 RTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .+.+++++||++|.|++++|+++++.+.+
T Consensus       139 ~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  167 (193)
T cd04118         139 IKAQHFETSSKTGQNVDELFQKVAEDFVS  167 (193)
T ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            34678999999999999999999987754

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.70  E-value=2.5e-16  Score=90.98  Aligned_cols=96  Identities=27%  Similarity=0.385  Sum_probs=77.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN--CMSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++++||.|+..  .....+..+...     ..+.+
T Consensus        64 ~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-----~~~~~  137 (162)
T PF00071_consen   64 LRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-----ELGVP  137 (162)
T ss_dssp             HHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-----HTTSE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-----HhCCE
Confidence            356789999999999999999999999987777655432 4689999999999875  345555554443     23479


Q ss_pred             EEEccccCCCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++||+++.|+.++|..+++.+.
T Consensus       138 ~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  138 YFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             EEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.70  E-value=2.2e-16  Score=92.37  Aligned_cols=93  Identities=14%  Similarity=0.149  Sum_probs=66.8

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcC--------------CHHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCM--------------SVAEVHR   66 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------------~~~~~~~   66 (106)
                      +|+.+++++|++++|||++++.+++.+.. |+......  ..+.|+++++||+|+....              ...+..+
T Consensus        64 ~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  141 (173)
T cd04130          64 LRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKA  141 (173)
T ss_pred             ccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHH
Confidence            57788999999999999999999988753 55444332  2468999999999985422              1112222


Q ss_pred             HhCCCCcCCCceEEEEccccCCCChHHHHHHHHH
Q psy12794         67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~  100 (106)
                      ...    .....+++++||++|.|++++|+.+..
T Consensus       142 ~a~----~~~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         142 LAE----KIGACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             HHH----HhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence            111    112238999999999999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04148 RGK RGK subfamily

Probab=99.70  E-value=2.5e-16  Score=95.52  Aligned_cols=94  Identities=18%  Similarity=0.268  Sum_probs=71.2

Q ss_pred             hhhc-cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEEE
Q psy12794          5 CYYS-NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         5 ~~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      .+++ ++|++++|||++++.+++....|+..+.......+.|+++|+||+|+....  ...+..+..     ...+++++
T Consensus        67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~  141 (221)
T cd04148          67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACA-----VVFDCKFI  141 (221)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHH-----HHcCCeEE
Confidence            4566 999999999999999999888777666554333578999999999985432  222222222     12346899


Q ss_pred             EccccCCCChHHHHHHHHHHHh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++||+++.|++++|+++++.+.
T Consensus       142 e~SA~~~~gv~~l~~~l~~~~~  163 (221)
T cd04148         142 ETSAGLQHNVDELLEGIVRQIR  163 (221)
T ss_pred             EecCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999998875

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0395|consensus

Probab=99.70  E-value=5.2e-16  Score=92.51  Aligned_cols=98  Identities=19%  Similarity=0.227  Sum_probs=79.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN--CMSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +-..|+++.|++++||+++++.||+++..++..+.........|+++||||+|+..  ....++.....     ...+++
T Consensus        67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la-----~~~~~~  141 (196)
T KOG0395|consen   67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALA-----RSWGCA  141 (196)
T ss_pred             HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHH-----HhcCCc
Confidence            34678999999999999999999999998888876655556689999999999975  23334433332     445678


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      |+++||+...+++++|..|.+.+..
T Consensus       142 f~E~Sak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  142 FIETSAKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             EEEeeccCCcCHHHHHHHHHHHHHh
Confidence            9999999999999999999987754

>KOG0079|consensus

Probab=99.69  E-value=2.3e-16  Score=88.72  Aligned_cols=94  Identities=20%  Similarity=0.264  Sum_probs=76.5

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      -..||++.+++++|||+++.+||.....|+++..++.  ...|-++|+||.|.++..  ..++...+.     ...++++
T Consensus        74 tstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A-----~~mgie~  146 (198)
T KOG0079|consen   74 TSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFA-----LQMGIEL  146 (198)
T ss_pred             HHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHH-----HhcCchh
Confidence            4569999999999999999999999999999987663  368999999999987653  233344333     3357899


Q ss_pred             EEccccCCCChHHHHHHHHHHHh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      |++||++.+|++.+|.-|.++..
T Consensus       147 FETSaKe~~NvE~mF~cit~qvl  169 (198)
T KOG0079|consen  147 FETSAKENENVEAMFHCITKQVL  169 (198)
T ss_pred             eehhhhhcccchHHHHHHHHHHH
Confidence            99999999999999998877653

>PLN03118 Rab family protein; Provisional

Probab=99.69  E-value=8.3e-16  Score=92.60  Aligned_cols=97  Identities=20%  Similarity=0.217  Sum_probs=72.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC-cCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCce
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE-EELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~   78 (106)
                      +|..|++++|++++|+|.+++.++..+..++...+.. ....+.|+++|+||+|+....  ...+......     ..++
T Consensus        78 ~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-----~~~~  152 (211)
T PLN03118         78 LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-----EHGC  152 (211)
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCC
Confidence            5788999999999999999999999887654443332 122457999999999986432  2233322221     2346


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .++++||+++.|++++|++|.+.+.
T Consensus       153 ~~~e~SAk~~~~v~~l~~~l~~~~~  177 (211)
T PLN03118        153 LFLECSAKTRENVEQCFEELALKIM  177 (211)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999998764

>cd01893 Miro1 Miro1 subfamily

Probab=99.68  E-value=2.5e-16  Score=91.54  Aligned_cols=98  Identities=13%  Similarity=0.171  Sum_probs=69.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~   77 (106)
                      .|..+++++|++++|+|++++.+++.+...+.+.+.... .+.|+++|+||+|+.+....    .++.....    ....
T Consensus        63 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~  137 (166)
T cd01893          63 NLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMN----EFRE  137 (166)
T ss_pred             HHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHH----HHhc
Confidence            356678999999999999999999987644444343322 36899999999998654321    11111111    0011


Q ss_pred             -eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         78 -FQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        78 -~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                       .+++++||+++.|++++|+.+.+.+..
T Consensus       138 ~~~~~e~Sa~~~~~v~~lf~~~~~~~~~  165 (166)
T cd01893         138 IETCVECSAKTLINVSEVFYYAQKAVLH  165 (166)
T ss_pred             ccEEEEeccccccCHHHHHHHHHHHhcC
Confidence             379999999999999999999887643

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0081|consensus

Probab=99.67  E-value=2.9e-16  Score=89.33  Aligned_cols=98  Identities=14%  Similarity=0.219  Sum_probs=79.0

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      -..||+++=+++++||.++..||..+..|+-.+..+.-..+..+++.+||+|+....  +..+.....     ...++||
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La-----~kyglPY  158 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALA-----DKYGLPY  158 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHH-----HHhCCCe
Confidence            346899999999999999999999999999887776555678999999999997642  333333333     3456899


Q ss_pred             EEccccCCCChHHHHHHHHHHHhhc
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      |++||-+|+||++..+.|.+.+-++
T Consensus       159 fETSA~tg~Nv~kave~LldlvM~R  183 (219)
T KOG0081|consen  159 FETSACTGTNVEKAVELLLDLVMKR  183 (219)
T ss_pred             eeeccccCcCHHHHHHHHHHHHHHH
Confidence            9999999999999999888876554

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.67  E-value=1.4e-15  Score=89.32  Aligned_cols=98  Identities=18%  Similarity=0.242  Sum_probs=76.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..++..++++++++|+++..+++.+..++..+++.....+.|+++++||+|+...  ....+.....     +..+.+
T Consensus        65 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~  139 (180)
T cd04137          65 LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAA  139 (180)
T ss_pred             HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCe
Confidence            577889999999999999999999999888877777554467899999999998632  2222222222     122358


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||+++.|+.+++.++.+.+.+
T Consensus       140 ~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (180)
T cd04137         140 FLESSARENENVEEAFELLIEEIEK  164 (180)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987753

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG0086|consensus

Probab=99.66  E-value=1.5e-15  Score=85.91  Aligned_cols=98  Identities=18%  Similarity=0.274  Sum_probs=76.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~   79 (106)
                      .-++||+++-+.++|||++++++|+.+..|+.+... ....+.-+++++||.|+..+.  ...+..+..     +.+.+.
T Consensus        74 VtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R~VtflEAs~Fa-----qEnel~  147 (214)
T KOG0086|consen   74 VTRSYYRGAAGALLVYDITSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELM  147 (214)
T ss_pred             HHHHHhccccceEEEEeccchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhhhhhHHHHHhhh-----ccccee
Confidence            347899999999999999999999999999877543 334678899999999986542  233333333     445678


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++||++|+|+++.|-..++.+..+
T Consensus       148 flETSa~TGeNVEEaFl~c~~tIl~k  173 (214)
T KOG0086|consen  148 FLETSALTGENVEEAFLKCARTILNK  173 (214)
T ss_pred             eeeecccccccHHHHHHHHHHHHHHH
Confidence            99999999999999998887766543

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.65  E-value=3.2e-15  Score=87.40  Aligned_cols=95  Identities=20%  Similarity=0.254  Sum_probs=66.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH-HHH-------------HH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMSV-AEV-------------HR   66 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~-------------~~   66 (106)
                      +|..+++++|++++|+|++++.+++.+.. |...+...  ..+.|+++++||+|+...... .++             .+
T Consensus        65 ~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~  142 (175)
T cd01870          65 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD  142 (175)
T ss_pred             ccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHH
Confidence            45567899999999999999988888764 44333322  246899999999998543111 111             11


Q ss_pred             HhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ...    .....++++|||++|.|++++|+++.+.+
T Consensus       143 ~~~----~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         143 MAN----KIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             HHH----HcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            110    11234899999999999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00876 Ras Ras family

Probab=99.65  E-value=1.6e-15  Score=87.19  Aligned_cols=96  Identities=22%  Similarity=0.274  Sum_probs=74.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++..+++++|++++|+|++++.++.+...++..+.......++|+++++||+|+...  ....++.+...     ..+.+
T Consensus        63 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~  137 (160)
T cd00876          63 MRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCP  137 (160)
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCc
Confidence            466789999999999999999998888887777666543357999999999998652  23333433332     12368


Q ss_pred             EEEccccCCCChHHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++++||+++.|+++++++|.+.+
T Consensus       138 ~~~~S~~~~~~i~~l~~~l~~~i  160 (160)
T cd00876         138 FIETSAKDNINIDEVFKLLVREI  160 (160)
T ss_pred             EEEeccCCCCCHHHHHHHHHhhC
Confidence            99999999999999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0083|consensus

Probab=99.64  E-value=1.4e-16  Score=88.23  Aligned_cols=94  Identities=20%  Similarity=0.271  Sum_probs=73.5

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-c----CCHHHHHHHhCCCCcCCCc
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN-C----MSVAEVHRALGLENLKDRT   77 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~----~~~~~~~~~~~~~~~~~~~   77 (106)
                      -..||+++|+++++||++++.||+.++.|+.++-. .....+.+.+++||+|+.. .    ..-+...+.        .+
T Consensus        64 t~ayyrda~allllydiankasfdn~~~wlsei~e-y~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~--------y~  134 (192)
T KOG0083|consen   64 THAYYRDADALLLLYDIANKASFDNCQAWLSEIHE-YAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEA--------YG  134 (192)
T ss_pred             hHhhhcccceeeeeeecccchhHHHHHHHHHHHHH-HHHhhHhHhhhccccccchhhccccchHHHHHHH--------HC
Confidence            35699999999999999999999999998876543 2224688999999999843 1    122233333        35


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +|+.++||++|-|++-.|..+++.+.++
T Consensus       135 ipfmetsaktg~nvd~af~~ia~~l~k~  162 (192)
T KOG0083|consen  135 IPFMETSAKTGFNVDLAFLAIAEELKKL  162 (192)
T ss_pred             CCceeccccccccHhHHHHHHHHHHHHh
Confidence            6999999999999999999999887653

>cd04114 Rab30 Rab30 subfamily

Probab=99.64  E-value=4.4e-15  Score=86.28  Aligned_cols=96  Identities=19%  Similarity=0.227  Sum_probs=69.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HHHHHHHhCCCCcCCCceEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-VAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~   80 (106)
                      .+..+++.+|++++|+|++++.++..+..|+..+.. ....+.|+++++||+|+..... ..+..+.+.    +....++
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~  146 (169)
T cd04114          72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQ-YANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYY  146 (169)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeE
Confidence            356789999999999999998888877766654332 2224689999999999864321 122222222    1123579


Q ss_pred             EEccccCCCChHHHHHHHHHHH
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +++||++|.|+.++|+++.+.+
T Consensus       147 ~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         147 LETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00154 Rab Rab family

Probab=99.63  E-value=4.6e-15  Score=84.82  Aligned_cols=92  Identities=22%  Similarity=0.336  Sum_probs=72.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC--CcCCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK--NCMSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.++..+..|+..+..... .+.|+++++||+|+.  ......++.+...     ..+.+
T Consensus        65 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~  138 (159)
T cd00154          65 ITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLL  138 (159)
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCe
Confidence            467889999999999999998889888887766655422 468999999999984  3334455554443     24578


Q ss_pred             EEEccccCCCChHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLS   99 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~   99 (106)
                      ++++||+++.|+++++.++.
T Consensus       139 ~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         139 FFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             EEEEecCCCCCHHHHHHHHh
Confidence            99999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04129 Rho2 Rho2 subfamily

Probab=99.63  E-value=6.7e-15  Score=87.17  Aligned_cols=95  Identities=15%  Similarity=0.183  Sum_probs=67.4

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcC------------CHHHHHHHhC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCM------------SVAEVHRALG   69 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~   69 (106)
                      ++.+++++|++++++|++++.+++++.. |+..+.+..  .+.|+++|+||+|+....            ...+......
T Consensus        66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (187)
T cd04129          66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAK  143 (187)
T ss_pred             chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHH
Confidence            3456889999999999999999998864 555444332  469999999999984321            1111111111


Q ss_pred             CCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         70 LENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        70 ~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                          .....++++|||++|.|++++|+++.+.+.
T Consensus       144 ----~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~  173 (187)
T cd04129         144 ----EIGAKKYMECSALTGEGVDDVFEAATRAAL  173 (187)
T ss_pred             ----HhCCcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence                111247999999999999999999997664

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00157 Rho Rho (Ras homology) family

Probab=99.63  E-value=5.4e-15  Score=85.98  Aligned_cols=93  Identities=13%  Similarity=0.172  Sum_probs=66.0

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-------------HHHHHHHhC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-------------VAEVHRALG   69 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-------------~~~~~~~~~   69 (106)
                      +..+++.+|++++|+|++++.++......+...+.... .+.|+++|+||+|+.....             ..+..+...
T Consensus        65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~  143 (171)
T cd00157          65 RPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK  143 (171)
T ss_pred             chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH
Confidence            45667899999999999998888877654444333322 3799999999999865432             112222221


Q ss_pred             CCCcCCCceEEEEccccCCCChHHHHHHHHH
Q psy12794         70 LENLKDRTFQIFKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        70 ~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~  100 (106)
                          .....+++++||++|.|++++++++.+
T Consensus       144 ----~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         144 ----EIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             ----HhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence                112338999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.59  E-value=3e-14  Score=86.04  Aligned_cols=96  Identities=19%  Similarity=0.260  Sum_probs=73.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|..|+++++++++|+|++++.++..+..|+..+...  ..+.|+++++||+|+.......+..+..     ...++.++
T Consensus        74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~  146 (215)
T PTZ00132         74 LRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQITFH-----RKKNLQYY  146 (215)
T ss_pred             hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHHHHH-----HHcCCEEE
Confidence            5678899999999999999999999888777665533  2468999999999985432212222222     22356899


Q ss_pred             EccccCCCChHHHHHHHHHHHhh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++||++|.|+++.|.++++.+..
T Consensus       147 e~Sa~~~~~v~~~f~~ia~~l~~  169 (215)
T PTZ00132        147 DISAKSNYNFEKPFLWLARRLTN  169 (215)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999999987753

>KOG0095|consensus

Probab=99.59  E-value=3.6e-15  Score=84.13  Aligned_cols=98  Identities=19%  Similarity=0.234  Sum_probs=74.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      +-.+||+.+|++|++||++-.++|+=+.+|+.++-+. ...++-.++|+||+|+.+. ....++.+.+.    +.....|
T Consensus        72 itqsyyrsahalilvydiscqpsfdclpewlreie~y-an~kvlkilvgnk~d~~drrevp~qigeefs----~~qdmyf  146 (213)
T KOG0095|consen   72 ITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQY-ANNKVLKILVGNKIDLADRREVPQQIGEEFS----EAQDMYF  146 (213)
T ss_pred             HHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHH-hhcceEEEeeccccchhhhhhhhHHHHHHHH----Hhhhhhh
Confidence            3457999999999999999999999988888776543 2245778999999998643 22233333333    3345678


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++||++..|++.+|..++..+..
T Consensus       147 letsakea~nve~lf~~~a~rli~  170 (213)
T KOG0095|consen  147 LETSAKEADNVEKLFLDLACRLIS  170 (213)
T ss_pred             hhhcccchhhHHHHHHHHHHHHHH
Confidence            999999999999999999877653

>cd01898 Obg Obg subfamily

Probab=99.59  E-value=2.1e-14  Score=83.46  Aligned_cols=91  Identities=23%  Similarity=0.229  Sum_probs=64.7

Q ss_pred             hccCCeEEEEEECCCc-chHHHHHHHHHHHhcCc-CCCCCeEEEEeeCCCCCCcCCHHH-HHHHhCCCCcCCCceEEEEc
Q psy12794          7 YSNTDAIIYVVDSSDR-DRIGISKEELLAMLKEE-ELRDAILVILANKQDMKNCMSVAE-VHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   83 (106)
                      +.++|++++|+|++++ .+++....+...+.... ...++|+++|+||+|+.+.....+ ..+...    .....+++++
T Consensus        76 ~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~  151 (170)
T cd01898          76 IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK----ELWGKPVFPI  151 (170)
T ss_pred             HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh----hCCCCCEEEE
Confidence            3459999999999988 67777766655544321 124689999999999865433222 222222    1134679999


Q ss_pred             cccCCCChHHHHHHHHHH
Q psy12794         84 SAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~  101 (106)
                      ||+++.|++++++++.+.
T Consensus       152 Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         152 SALTGEGLDELLRKLAEL  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHhh
Confidence            999999999999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0097|consensus

Probab=99.58  E-value=4.1e-14  Score=79.32  Aligned_cols=96  Identities=17%  Similarity=0.273  Sum_probs=75.8

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      -++||+++-+.++|+|++.+.++..+..|+.....- ...+..+++++||.|+..+  ...++..+..     +.+++-+
T Consensus        77 trsyyrgaagalmvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~fa-----eengl~f  150 (215)
T KOG0097|consen   77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFA-----EENGLMF  150 (215)
T ss_pred             HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHH-----hhcCeEE
Confidence            367999999999999999999999999888775432 2356789999999998754  3344444443     4567899


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++||++|+|+++.|-..++.+-+
T Consensus       151 le~saktg~nvedafle~akkiyq  174 (215)
T KOG0097|consen  151 LEASAKTGQNVEDAFLETAKKIYQ  174 (215)
T ss_pred             EEecccccCcHHHHHHHHHHHHHH
Confidence            999999999999999887776643

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.57  E-value=2.3e-14  Score=88.16  Aligned_cols=90  Identities=21%  Similarity=0.265  Sum_probs=67.4

Q ss_pred             chhhhhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH-HHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV-AEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~   79 (106)
                      +.+.|++++|++++|+|++++. ++..+..|+... ..   .+.|+++|+||+|+.+.... .+..+.+.     ..+++
T Consensus        29 L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~-~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-----~~g~~   99 (245)
T TIGR00157        29 LTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVA-EA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-----NIGYQ   99 (245)
T ss_pred             EECcccccCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-----HCCCe
Confidence            4466899999999999999876 888888777543 22   56899999999998643221 12223332     24578


Q ss_pred             EEEccccCCCChHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~  100 (106)
                      ++++||++|.|++++|+.+.+
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.57  E-value=4e-14  Score=90.43  Aligned_cols=95  Identities=23%  Similarity=0.182  Sum_probs=67.9

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC-cCCCCCeEEEEeeCCCCCCcCCHH--HHHHHhCCCCcCCCceEEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE-EELRDAILVILANKQDMKNCMSVA--EVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~   81 (106)
                      .+++.++++++|+|+++..++++...|..++... ..+.++|+++|+||+|+.......  ......     ...+.+++
T Consensus       232 rhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~-----~~~~~~i~  306 (335)
T PRK12299        232 KHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL-----AALGGPVF  306 (335)
T ss_pred             HHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH-----HhcCCCEE
Confidence            3567899999999999877777777666555432 123478999999999986533211  122221     11235799


Q ss_pred             EccccCCCChHHHHHHHHHHHhh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++||++++|++++++++.+.+.+
T Consensus       307 ~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        307 LISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             EEEcCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987753

>cd01890 LepA LepA subfamily

Probab=99.57  E-value=2.7e-14  Score=83.73  Aligned_cols=92  Identities=17%  Similarity=0.225  Sum_probs=64.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH---HHHHHHhCCCCcCCCce
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV---AEVHRALGLENLKDRTF   78 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~   78 (106)
                      +|..+++++|++++|+|++++.++.....+. ... .   .++|+++++||+|+.+....   .++.+.++.     ...
T Consensus        83 ~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~-~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~-----~~~  152 (179)
T cd01890          83 EVSRSLAACEGALLLVDATQGVEAQTLANFY-LAL-E---NNLEIIPVINKIDLPSADPERVKQQIEDVLGL-----DPS  152 (179)
T ss_pred             HHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHH-H---cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC-----Ccc
Confidence            4678899999999999998876655544332 222 1   36899999999998643211   223333321     123


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++++||++|.|++++++++.+.+.
T Consensus       153 ~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         153 EAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             cEEEeeccCCCCHHHHHHHHHhhCC
Confidence            5899999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.53  E-value=8.8e-14  Score=88.73  Aligned_cols=93  Identities=26%  Similarity=0.259  Sum_probs=64.9

Q ss_pred             hhccCCeEEEEEECCCc---chHHHHHHHHHHHhcC-cCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          6 YYSNTDAIIYVVDSSDR---DRIGISKEELLAMLKE-EELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +++.++++++|+|+++.   .++++...+..++... ..+.++|+++|+||+|+.......+..+.+.    +..+.+++
T Consensus       232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi  307 (329)
T TIGR02729       232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVF  307 (329)
T ss_pred             HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEE
Confidence            45679999999999875   4556555544443322 1235789999999999865433333333332    12235799


Q ss_pred             EccccCCCChHHHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++||++++|++++++++.+.+
T Consensus       308 ~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       308 PISALTGEGLDELLYALAELL  328 (329)
T ss_pred             EEEccCCcCHHHHHHHHHHHh
Confidence            999999999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.52  E-value=1.5e-13  Score=79.76  Aligned_cols=86  Identities=14%  Similarity=0.212  Sum_probs=59.6

Q ss_pred             CCeEEEEEECCCcchH--HHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794         10 TDAIIYVVDSSDRDRI--GISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKE   87 (106)
Q Consensus        10 ~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~   87 (106)
                      +|++++|+|++++.++  +....++..+...  ..+.|+++++||+|+.......+..+..     .....+++++||++
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~  152 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEEE-----ELEGEEVLKISTLT  152 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHhh-----hhccCceEEEEecc
Confidence            6899999999876543  4444444443222  1378999999999986533222222221     22456899999999


Q ss_pred             CCChHHHHHHHHHHH
Q psy12794         88 GEGLNDSMDWLSNAL  102 (106)
Q Consensus        88 ~~~v~~~~~~l~~~~  102 (106)
                      |.|++++++++.+.+
T Consensus       153 ~~gi~~l~~~l~~~~  167 (168)
T cd01897         153 EEGVDEVKNKACELL  167 (168)
T ss_pred             cCCHHHHHHHHHHHh
Confidence            999999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.51  E-value=8.2e-14  Score=78.99  Aligned_cols=82  Identities=18%  Similarity=0.255  Sum_probs=57.1

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      +++++|++++|+|++++.++... . +...      ...|+++++||+|+.+. ....+..+....    ....+++++|
T Consensus        59 ~~~~ad~vilv~d~~~~~s~~~~-~-~~~~------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~S  126 (142)
T TIGR02528        59 TAADADVIALVQSATDPESRFPP-G-FASI------FVKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEIS  126 (142)
T ss_pred             HhhcCCEEEEEecCCCCCcCCCh-h-HHHh------ccCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEe
Confidence            47899999999999998876542 2 2222      13599999999998642 223333333321    1123789999


Q ss_pred             ccCCCChHHHHHHHH
Q psy12794         85 AKEGEGLNDSMDWLS   99 (106)
Q Consensus        85 a~~~~~v~~~~~~l~   99 (106)
                      |++|.|++++|+++.
T Consensus       127 a~~~~gi~~l~~~l~  141 (142)
T TIGR02528       127 SVDEQGLEALVDYLN  141 (142)
T ss_pred             cCCCCCHHHHHHHHh
Confidence            999999999999875

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.49  E-value=3.8e-13  Score=89.51  Aligned_cols=93  Identities=19%  Similarity=0.140  Sum_probs=64.0

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      +++++|++++|+|++++.++.+.. ++.. +..   .++|+++|+||+|+.+........+.+..........+++++||
T Consensus       290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~-~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA  364 (472)
T PRK03003        290 AIEAAEVAVVLIDASEPISEQDQR-VLSM-VIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA  364 (472)
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHH-HHHH-HHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence            578999999999999887777654 2322 222   46899999999998643222222222211111223357899999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q psy12794         86 KEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~~  103 (106)
                      ++|.|++++|+.+.+.+.
T Consensus       365 k~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        365 KTGRAVDKLVPALETALE  382 (472)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999988764

>KOG0077|consensus

Probab=99.48  E-value=8.1e-14  Score=79.75  Aligned_cols=101  Identities=35%  Similarity=0.601  Sum_probs=83.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCC----------
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLE----------   71 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~----------   71 (106)
                      .|..|+..+|++++++|+-+.+.+.+....+..++....+.+.|+++.+||+|.+.+...++..-.++..          
T Consensus        80 ~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~  159 (193)
T KOG0077|consen   80 VWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVN  159 (193)
T ss_pred             HHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhccccccc
Confidence            5999999999999999999999999999989888888777899999999999998877666554433311          


Q ss_pred             --CcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         72 --NLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        72 --~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                        ....+.+.++.||...+.|..+.|.|+...+
T Consensus       160 ~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  160 LTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             ccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence              1123457899999999999999999987654

>cd01878 HflX HflX subfamily

Probab=99.47  E-value=4.6e-13  Score=80.21  Aligned_cols=87  Identities=26%  Similarity=0.334  Sum_probs=62.5

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAK   86 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~   86 (106)
                      +.++|++++|+|++++.++..... +.+.+......++|+++|+||+|+......   ...+     .....+++++||+
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~---~~~~-----~~~~~~~~~~Sa~  188 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQIET-VEKVLKELGAEDIPMILVLNKIDLLDDEEL---EERL-----EAGRPDAVFISAK  188 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHHHH-HHHHHHHcCcCCCCEEEEEEccccCChHHH---HHHh-----hcCCCceEEEEcC
Confidence            678999999999998877665543 233444333356899999999998643221   1111     2234579999999


Q ss_pred             CCCChHHHHHHHHHHH
Q psy12794         87 EGEGLNDSMDWLSNAL  102 (106)
Q Consensus        87 ~~~~v~~~~~~l~~~~  102 (106)
                      ++.|+++++++|.+.+
T Consensus       189 ~~~gi~~l~~~L~~~~  204 (204)
T cd01878         189 TGEGLDELLEAIEELL  204 (204)
T ss_pred             CCCCHHHHHHHHHhhC
Confidence            9999999999998653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.46  E-value=6.9e-13  Score=76.12  Aligned_cols=89  Identities=24%  Similarity=0.246  Sum_probs=60.0

Q ss_pred             hhhhhc--cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          3 WRCYYS--NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         3 ~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      +..++.  ++|++++|+|.+++.....   ++.... .   .++|+++++||+|+..........+.+.    ...+.++
T Consensus        66 ~~~~~~~~~~d~vi~v~d~~~~~~~~~---~~~~~~-~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~  134 (158)
T cd01879          66 ARDFLLGEKPDLIVNVVDATNLERNLY---LTLQLL-E---LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPV  134 (158)
T ss_pred             HHHHhcCCCCcEEEEEeeCCcchhHHH---HHHHHH-H---cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCe
Confidence            556665  9999999999987544322   222222 2   3689999999999865321111111221    1224589


Q ss_pred             EEccccCCCChHHHHHHHHHHH
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +++||.++.|+.++++++.+.+
T Consensus       135 ~~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         135 VPTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             EEEEccCCCCHHHHHHHHHHHh
Confidence            9999999999999999998765

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.46  E-value=6.7e-13  Score=87.33  Aligned_cols=94  Identities=19%  Similarity=0.210  Sum_probs=64.5

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC-CcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK-NCMSVAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      .+++.+|++++|+|++++.+..+..  +......   .++|+++|+||+|+. +.....++.+.+..........+++++
T Consensus       250 ~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~  324 (429)
T TIGR03594       250 KAIERADVVLLVLDATEGITEQDLR--IAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI  324 (429)
T ss_pred             HHHHhCCEEEEEEECCCCccHHHHH--HHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence            3678999999999999876655443  2233222   468999999999986 222223333333211112235789999


Q ss_pred             cccCCCChHHHHHHHHHHHh
Q psy12794         84 SAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ||++|.|++++++++.+...
T Consensus       325 SA~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       325 SALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999887654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00436 era GTP-binding protein Era

Probab=99.45  E-value=8.9e-13  Score=82.22  Aligned_cols=91  Identities=24%  Similarity=0.235  Sum_probs=62.3

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH-HHHHHhCCCCcCCCceEEEE
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA-EVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   82 (106)
                      ..+++++|++++|+|+++..+..   ..+...+..   .+.|+++|+||+|+....... ...+....    ....++++
T Consensus        74 ~~~l~~aDvvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~v~~  143 (270)
T TIGR00436        74 RSAIGGVDLILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL----EDFKDIVP  143 (270)
T ss_pred             HHHHhhCCEEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh----cCCCceEE
Confidence            45678999999999998876653   223343433   468999999999985322111 12222111    11127899


Q ss_pred             ccccCCCChHHHHHHHHHHHhh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +||++|.|++++++++.+.+..
T Consensus       144 iSA~~g~gi~~L~~~l~~~l~~  165 (270)
T TIGR00436       144 ISALTGDNTSFLAAFIEVHLPE  165 (270)
T ss_pred             EecCCCCCHHHHHHHHHHhCCC
Confidence            9999999999999999887653

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01859 MJ1464 MJ1464

Probab=99.45  E-value=5.7e-13  Score=76.84  Aligned_cols=92  Identities=18%  Similarity=0.158  Sum_probs=61.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +++++.+++|++++|+|++++....+.  .+..+...   .++|+++++||+|+.+...........     ...+.+++
T Consensus         5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~   74 (156)
T cd01859           5 LVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIK-----ESEGIPVV   74 (156)
T ss_pred             HHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHH-----HhCCCcEE
Confidence            466788899999999999775432221  23333322   368999999999985321111111111     11235789


Q ss_pred             EccccCCCChHHHHHHHHHHHh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .+||+++.|++++++.+.+.+.
T Consensus        75 ~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          75 YVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEEccccccHHHHHHHHHHHHh
Confidence            9999999999999999987664

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.44  E-value=6.3e-13  Score=77.51  Aligned_cols=94  Identities=20%  Similarity=0.180  Sum_probs=63.9

Q ss_pred             hhhccCCeEEEEEECCCc------chHHHHHHHHHHHhcCcC------CCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCC
Q psy12794          5 CYYSNTDAIIYVVDSSDR------DRIGISKEELLAMLKEEE------LRDAILVILANKQDMKNCMSVAEVHRALGLEN   72 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~   72 (106)
                      .+++++|++++|+|.+++      .++.+...+.........      ..++|+++++||+|+.............   .
T Consensus        70 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~  146 (176)
T cd01881          70 AHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE---L  146 (176)
T ss_pred             HHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH---H
Confidence            357889999999999887      466666555554443221      1468999999999986543222221001   1


Q ss_pred             cCCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794         73 LKDRTFQIFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        73 ~~~~~~~~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      ......+++++||+++.|++++++++...
T Consensus       147 ~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         147 ALEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            12235579999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.44  E-value=1.1e-12  Score=84.44  Aligned_cols=86  Identities=26%  Similarity=0.264  Sum_probs=60.8

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      +++++|++++|+|++++.+.+.... +.+.+......++|+++|+||+|+....   ++.....      ...+++.+||
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~------~~~~~i~iSA  334 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE------GYPEAVFVSA  334 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCChH---hHHHHHh------CCCCEEEEEc
Confidence            4789999999999998877665543 2233333333478999999999986432   2222111      1135799999


Q ss_pred             cCCCChHHHHHHHHHH
Q psy12794         86 KEGEGLNDSMDWLSNA  101 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~  101 (106)
                      ++|.|++++++++.+.
T Consensus       335 ktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       335 KTGEGLDLLLEAIAER  350 (351)
T ss_pred             cCCCCHHHHHHHHHhh
Confidence            9999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.44  E-value=4.1e-12  Score=74.82  Aligned_cols=97  Identities=22%  Similarity=0.236  Sum_probs=67.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCc----
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENL----   73 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~----   73 (106)
                      .|..+++++|++++|+|++++.+..... .+ .....   .+.|+++++||+|+.....    ..++.+.+.....    
T Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~-~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (189)
T cd00881          78 EVIRGLSVSDGAILVVDANEGVQPQTRE-HL-RIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK  152 (189)
T ss_pred             HHHHHHHhcCEEEEEEECCCCCcHHHHH-HH-HHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchh
Confidence            3677889999999999998765443222 22 22222   4789999999999865322    2234444432211    


Q ss_pred             -----CCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         74 -----KDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        74 -----~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                           .....+++++||++|.|+++++.++.+.+.
T Consensus       153 ~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             hhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                 224678999999999999999999998775

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.43  E-value=2.4e-12  Score=72.61  Aligned_cols=93  Identities=33%  Similarity=0.462  Sum_probs=66.8

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHH--HHHhCCCCcCCCceEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEV--HRALGLENLKDRTFQI   80 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~   80 (106)
                      |..+++++|++++|+|++++.+......++..........++|+++++||+|+.........  .....    .....++
T Consensus        62 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~----~~~~~~~  137 (157)
T cd00882          62 RRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA----KELGVPY  137 (157)
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH----hhcCCcE
Confidence            45578899999999999998887777655323333333467999999999998654332222  11111    2345789


Q ss_pred             EEccccCCCChHHHHHHHH
Q psy12794         81 FKTSAKEGEGLNDSMDWLS   99 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~   99 (106)
                      +++|+.++.|+.++++++.
T Consensus       138 ~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         138 FETSAKTGENVEELFEELA  156 (157)
T ss_pred             EEEecCCCCChHHHHHHHh
Confidence            9999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.43  E-value=1.1e-12  Score=75.97  Aligned_cols=88  Identities=19%  Similarity=0.275  Sum_probs=62.0

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      +++++|++++|+|+++..++..  .++...  .   .++|+++++||+|+.. .....+.+.+...   ....+++++||
T Consensus        61 ~~~~ad~il~v~d~~~~~s~~~--~~~~~~--~---~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~---~~~~p~~~~Sa  129 (158)
T PRK15467         61 TLQDVDMLIYVHGANDPESRLP--AGLLDI--G---VSKRQIAVISKTDMPD-ADVAATRKLLLET---GFEEPIFELNS  129 (158)
T ss_pred             HHhcCCEEEEEEeCCCcccccC--HHHHhc--c---CCCCeEEEEEccccCc-ccHHHHHHHHHHc---CCCCCEEEEEC
Confidence            3689999999999987765422  223332  1   3579999999999854 2334444433211   11258999999


Q ss_pred             cCCCChHHHHHHHHHHHhh
Q psy12794         86 KEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++|+|++++++.+.+.+..
T Consensus       130 ~~g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        130 HDPQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             CCccCHHHHHHHHHHhchh
Confidence            9999999999999987754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.43  E-value=1.9e-12  Score=86.18  Aligned_cols=90  Identities=21%  Similarity=0.257  Sum_probs=62.3

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      +..+++++|++++|+|++++.++.+.  .+...+..   .++|+++|+||+|+.....  +..+.+..    ..+ ..++
T Consensus       111 ~~~~~~~aD~il~VvD~~~~~s~~~~--~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~----g~~-~~~~  178 (472)
T PRK03003        111 AEVAMRTADAVLFVVDATVGATATDE--AVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL----GLG-EPHP  178 (472)
T ss_pred             HHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc----CCC-CeEE
Confidence            45688999999999999987665432  23344433   5789999999999854221  12222221    111 3468


Q ss_pred             ccccCCCChHHHHHHHHHHHhh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +||++|.|++++++++.+.+.+
T Consensus       179 iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        179 VSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             EEcCCCCCcHHHHHHHHhhccc
Confidence            9999999999999999987643

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.41  E-value=1.7e-12  Score=86.31  Aligned_cols=93  Identities=24%  Similarity=0.288  Sum_probs=62.0

Q ss_pred             hhccCCeEEEEEECCCc----chHHHHH---HHHHHHhcCc-------CCCCCeEEEEeeCCCCCCcCCHH-HHHHHhCC
Q psy12794          6 YYSNTDAIIYVVDSSDR----DRIGISK---EELLAMLKEE-------ELRDAILVILANKQDMKNCMSVA-EVHRALGL   70 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~----~~~~~~~---~~~~~~~~~~-------~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~   70 (106)
                      ++++||++++|+|+++.    +.+.+..   ..+..+....       .+.++|.++|+||+|+++..... .+.+.+. 
T Consensus       233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~-  311 (500)
T PRK12296        233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE-  311 (500)
T ss_pred             HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH-
Confidence            46789999999999752    2333333   2333332210       23578999999999986532221 2222221 


Q ss_pred             CCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         71 ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        71 ~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                          ..+++++.+||++++|+++++.+|.+.+.
T Consensus       312 ----~~g~~Vf~ISA~tgeGLdEL~~~L~ell~  340 (500)
T PRK12296        312 ----ARGWPVFEVSAASREGLRELSFALAELVE  340 (500)
T ss_pred             ----HcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence                22568999999999999999999988774

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.41  E-value=3.6e-12  Score=73.85  Aligned_cols=96  Identities=27%  Similarity=0.261  Sum_probs=62.8

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHh---CCCC--cCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRAL---GLEN--LKDR   76 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---~~~~--~~~~   76 (106)
                      +|..++..+|++++|+|+++........ .+ ..+..   .++|+++++||+|+.+.. ...+...+   ....  ....
T Consensus        66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~-~~-~~~~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~  139 (168)
T cd01887          66 MRARGASLTDIAILVVAADDGVMPQTIE-AI-KLAKA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGG  139 (168)
T ss_pred             HHHHHHhhcCEEEEEEECCCCccHHHHH-HH-HHHHH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccC
Confidence            4677889999999999998753222111 12 12222   468999999999986432 22222211   1110  0123


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ..+++++||++|.|++++++++.+...
T Consensus       140 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         140 DVQIVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             cCcEEEeecccCCCHHHHHHHHHHhhh
Confidence            468999999999999999999988764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG0393|consensus

Probab=99.40  E-value=2.2e-12  Score=76.43  Aligned_cols=101  Identities=17%  Similarity=0.211  Sum_probs=69.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCC---------C
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLE---------N   72 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~---------~   72 (106)
                      +|+..|.++|.++++|++.++.+++.+..-|...+++.. .+.|+++||+|.|+.......+-.+..+..         .
T Consensus        69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~l  147 (198)
T KOG0393|consen   69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLEL  147 (198)
T ss_pred             ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHH
Confidence            455678999999999999999999997754444344322 679999999999997432110000000000         0


Q ss_pred             c-CCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         73 L-KDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        73 ~-~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      . +.....|++|||++..|+.++|+.......
T Consensus       148 A~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l  179 (198)
T KOG0393|consen  148 AKEIGAVKYLECSALTQKGVKEVFDEAIRAAL  179 (198)
T ss_pred             HHHhCcceeeeehhhhhCCcHHHHHHHHHHHh
Confidence            0 112368999999999999999998887653

>PRK15494 era GTPase Era; Provisional

Probab=99.40  E-value=2.9e-12  Score=82.19  Aligned_cols=89  Identities=16%  Similarity=0.315  Sum_probs=62.2

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      +++++|++++|+|.++  ++.+...++...+..   .+.|.++|+||+|+... ...++.+.+..   ......++++||
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSA  198 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISA  198 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEec
Confidence            4689999999999765  444444444444433   34677899999998643 33444444431   112357999999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q psy12794         86 KEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~~  103 (106)
                      ++|.|++++++++.+.+.
T Consensus       199 ktg~gv~eL~~~L~~~l~  216 (339)
T PRK15494        199 LSGKNIDGLLEYITSKAK  216 (339)
T ss_pred             cCccCHHHHHHHHHHhCC
Confidence            999999999999998765

>cd01894 EngA1 EngA1 subfamily

Probab=99.39  E-value=4.5e-12  Score=72.54  Aligned_cols=87  Identities=20%  Similarity=0.203  Sum_probs=59.3

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      ..+++++|++++|+|..++.+....  .+.+.+..   .+.|+++++||+|+......   ...+..    ....+++++
T Consensus        71 ~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~----~~~~~~~~~  138 (157)
T cd01894          71 ELAIEEADVILFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYS----LGFGEPIPI  138 (157)
T ss_pred             HHHHHhCCEEEEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHh----cCCCCeEEE
Confidence            3567899999999999765444332  23344443   35899999999998653221   122211    111267999


Q ss_pred             cccCCCChHHHHHHHHHHH
Q psy12794         84 SAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~~  102 (106)
                      |++++.|++++++++.+++
T Consensus       139 Sa~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         139 SAEHGRGIGDLLDAILELL  157 (157)
T ss_pred             ecccCCCHHHHHHHHHhhC
Confidence            9999999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01895 EngA2 EngA2 subfamily

Probab=99.39  E-value=6e-12  Score=72.98  Aligned_cols=91  Identities=19%  Similarity=0.230  Sum_probs=61.2

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      +++++|++++|+|++++.+.....  +......   .++|+++++||+|+...  .....+.+.+..........+++.+
T Consensus        81 ~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          81 AIERADVVLLVIDATEGITEQDLR--IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHhhcCeEEEEEeCCCCcchhHHH--HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            467899999999998876654432  2222222   36899999999998654  2223333333211111124689999


Q ss_pred             cccCCCChHHHHHHHHHH
Q psy12794         84 SAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~  101 (106)
                      ||+++.|+.++++.+.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999988764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04171 SelB SelB subfamily

Probab=99.38  E-value=3.4e-12  Score=73.60  Aligned_cols=90  Identities=20%  Similarity=0.191  Sum_probs=56.7

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCcCCCceEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~   80 (106)
                      .+++++|++++|+|+++..... ....+. .+...  ..+|+++++||+|+.....    ..++.+.+...  ...+.++
T Consensus        70 ~~~~~ad~ii~V~d~~~~~~~~-~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~  143 (164)
T cd04171          70 AGAGGIDLVLLVVAADEGIMPQ-TREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPI  143 (164)
T ss_pred             hhhhcCCEEEEEEECCCCccHh-HHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcE
Confidence            4678999999999997632111 111111 11111  2359999999999865321    12333333311  1135689


Q ss_pred             EEccccCCCChHHHHHHHHH
Q psy12794         81 FKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~  100 (106)
                      +++||+++.|++++++.+..
T Consensus       144 ~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         144 FPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             EEEeCCCCcCHHHHHHHHhh
Confidence            99999999999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.38  E-value=2.1e-12  Score=77.49  Aligned_cols=56  Identities=20%  Similarity=0.247  Sum_probs=47.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc------------------CCCCCeEEEEeeCCCCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE------------------ELRDAILVILANKQDMKN   57 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~p~ilv~nK~D~~~   57 (106)
                      +++.||+++|++|+|||++++.+++.+..|+.++....                  ...+.|+++|+||.|+.+
T Consensus        70 l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~  143 (202)
T cd04102          70 TRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP  143 (202)
T ss_pred             HHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence            57889999999999999999999999999888776521                  123689999999999854

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.37  E-value=9.2e-12  Score=81.75  Aligned_cols=91  Identities=21%  Similarity=0.228  Sum_probs=61.4

Q ss_pred             hhccCCeEEEEEECCCc---chHHHHHHHHHHHhcC-cCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          6 YYSNTDAIIYVVDSSDR---DRIGISKEELLAMLKE-EELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +++.++++++|+|+++.   .++++...+..++... ..+.++|.++|+||+|+...  ...+.+...     ....+++
T Consensus       233 hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~-----~l~~~i~  305 (424)
T PRK12297        233 HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKE-----KLGPKVF  305 (424)
T ss_pred             HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHH-----HhCCcEE
Confidence            35569999999999754   4555554444333322 22357999999999998532  222222211     0114789


Q ss_pred             EccccCCCChHHHHHHHHHHHh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .+||++++|++++++++.+.+.
T Consensus       306 ~iSA~tgeGI~eL~~~L~~~l~  327 (424)
T PRK12297        306 PISALTGQGLDELLYAVAELLE  327 (424)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999988764

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.36  E-value=7.1e-12  Score=82.69  Aligned_cols=92  Identities=20%  Similarity=0.221  Sum_probs=63.9

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      +++.+|++++|+|++++.+..+..  +......   .++|+++++||+|+.+.....++.+.+..........+++++||
T Consensus       252 ~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA  326 (435)
T PRK00093        252 AIERADVVLLVIDATEGITEQDLR--IAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA  326 (435)
T ss_pred             HHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence            578999999999999876655543  2233332   46899999999998643223333333332111224568999999


Q ss_pred             cCCCChHHHHHHHHHHH
Q psy12794         86 KEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~  102 (106)
                      ++|.|++++++.+.+..
T Consensus       327 ~~~~gv~~l~~~i~~~~  343 (435)
T PRK00093        327 LTGQGVDKLLEAIDEAY  343 (435)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999887654

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.36  E-value=4.3e-12  Score=76.18  Aligned_cols=94  Identities=12%  Similarity=0.128  Sum_probs=58.2

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~   80 (106)
                      ....++|++++|+|++++.........+..+ ...  ..+|+++++||+|+.+....    .++.+.+...  .....++
T Consensus       102 ~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~--~~~~~~i  176 (203)
T cd01888         102 SGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGT--IAENAPI  176 (203)
T ss_pred             HhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhcc--ccCCCcE
Confidence            3456789999999998642111111122222 111  23579999999998642211    2222322211  1134679


Q ss_pred             EEccccCCCChHHHHHHHHHHHh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +.+||++|.|++++++++.+.+.
T Consensus       177 ~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         177 IPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             EEEeCCCCCCHHHHHHHHHHhCC
Confidence            99999999999999999998765

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK04213 GTP-binding protein; Provisional

Probab=99.35  E-value=9.8e-12  Score=74.29  Aligned_cols=99  Identities=23%  Similarity=0.238  Sum_probs=59.4

Q ss_pred             chhhhhc----cCCeEEEEEECCCcchH----H-----HHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHH
Q psy12794          2 YWRCYYS----NTDAIIYVVDSSDRDRI----G-----ISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHR   66 (106)
Q Consensus         2 ~~~~~~~----~~d~~i~v~d~~~~~~~----~-----~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~   66 (106)
                      +|..|++    .++++++|+|.++....    .     .....+...+..   .++|+++|+||+|+....  ...++.+
T Consensus        79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~  155 (201)
T PRK04213         79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAE  155 (201)
T ss_pred             HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHH
Confidence            3555654    35788899998643211    0     011112233332   468999999999986432  2233444


Q ss_pred             HhCCCC-cCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         67 ALGLEN-LKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        67 ~~~~~~-~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .++... ......+++++||++| |+++++++|.+.+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            443210 0111236899999999 999999999987653

>cd00880 Era_like Era (E

Probab=99.35  E-value=1.7e-11  Score=69.84  Aligned_cols=94  Identities=27%  Similarity=0.236  Sum_probs=64.2

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      +..+++++|++++++|.+++.+..... +... ...   .+.|+++++||+|+.......................++++
T Consensus        69 ~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~-~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (163)
T cd00880          69 ARRVLERADLILFVVDADLRADEEEEK-LLEL-LRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIA  143 (163)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHH-HHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEE
Confidence            345789999999999999876655443 1222 222   57899999999998654333222110111111345678999


Q ss_pred             ccccCCCChHHHHHHHHHH
Q psy12794         83 TSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~  101 (106)
                      +||.++.|++++++++.+.
T Consensus       144 ~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         144 VSALTGEGIDELREALIEA  162 (163)
T ss_pred             EeeeccCCHHHHHHHHHhh
Confidence            9999999999999998865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01855 YqeH YqeH

Probab=99.34  E-value=3.5e-12  Score=75.76  Aligned_cols=95  Identities=17%  Similarity=0.147  Sum_probs=60.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHh---CCCCcCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRAL---GLENLKDRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~---~~~~~~~~~   77 (106)
                      +|..|++++|++++|+|++++..... . .+   ...  ..++|+++|+||+|+.... .........   .........
T Consensus        27 ~l~~~~~~ad~il~VvD~~~~~~~~~-~-~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (190)
T cd01855          27 LLSSISPKKALVVHVVDIFDFPGSLI-P-RL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP   99 (190)
T ss_pred             HHHhcccCCcEEEEEEECccCCCccc-h-hH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence            56778999999999999987542111 1 11   111  1468999999999986432 222222221   000001111


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ..++.+||++|.|++++++.+.+.+.
T Consensus       100 ~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855         100 KDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35899999999999999999988763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK11058 GTPase HflX; Provisional

Probab=99.34  E-value=2.7e-11  Score=79.74  Aligned_cols=89  Identities=19%  Similarity=0.192  Sum_probs=60.8

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceE-EEEcc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQ-IFKTS   84 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s   84 (106)
                      +++++|++++|+|++++.++..... +...+......++|+++|+||+|+..... ..... ..      .+.+ ++.+|
T Consensus       273 ~~~~ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~-~~------~~~~~~v~IS  343 (426)
T PRK11058        273 ETRQATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDR-DE------ENKPIRVWLS  343 (426)
T ss_pred             HhhcCCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchh-HHHHH-Hh------cCCCceEEEe
Confidence            3689999999999999876666532 22333322224689999999999864311 11111 10      1122 57899


Q ss_pred             ccCCCChHHHHHHHHHHHh
Q psy12794         85 AKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~~  103 (106)
                      |++|.|++++++++.+.+.
T Consensus       344 AktG~GIdeL~e~I~~~l~  362 (426)
T PRK11058        344 AQTGAGIPLLFQALTERLS  362 (426)
T ss_pred             CCCCCCHHHHHHHHHHHhh
Confidence            9999999999999998774

>PRK12289 GTPase RsgA; Reviewed

Probab=99.34  E-value=1e-11  Score=79.93  Aligned_cols=88  Identities=20%  Similarity=0.203  Sum_probs=61.6

Q ss_pred             hhhhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794          4 RCYYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      +.+++++|.+++|+|+.++. .+..+..++... ..   .++|+++|+||+|+.+........+.+     ...++.++.
T Consensus        84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~~  154 (352)
T PRK12289         84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPLF  154 (352)
T ss_pred             chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEEE
Confidence            45689999999999998765 444445555433 22   578999999999986432122222333     223567899


Q ss_pred             ccccCCCChHHHHHHHHH
Q psy12794         83 TSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~  100 (106)
                      +||+++.|++++++.+..
T Consensus       155 iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        155 ISVETGIGLEALLEQLRN  172 (352)
T ss_pred             EEcCCCCCHHHHhhhhcc
Confidence            999999999999988764

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.32  E-value=2e-11  Score=84.81  Aligned_cols=93  Identities=18%  Similarity=0.109  Sum_probs=63.5

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      +++++|++++|+|++++.+..+.. .+... ..   .++|+++|+||+|+.+......+.+.+..........+++.+||
T Consensus       529 ~i~~advvilViDat~~~s~~~~~-i~~~~-~~---~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA  603 (712)
T PRK09518        529 AIERSELALFLFDASQPISEQDLK-VMSMA-VD---AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA  603 (712)
T ss_pred             HhhcCCEEEEEEECCCCCCHHHHH-HHHHH-HH---cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence            468899999999999887776654 23222 22   46899999999998653222223222221110112346789999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q psy12794         86 KEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~~  103 (106)
                      ++|.|++++++.+.+...
T Consensus       604 ktg~gv~~L~~~i~~~~~  621 (712)
T PRK09518        604 KTGWHTNRLAPAMQEALE  621 (712)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999988764

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.32  E-value=1.3e-11  Score=81.83  Aligned_cols=80  Identities=20%  Similarity=0.317  Sum_probs=60.5

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      +++++|++++|+|.+++.++.+... +..      ..++|+++|+||+|+.+.....      .     ....+++++||
T Consensus       291 ~~~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~------~-----~~~~~~i~iSA  352 (449)
T PRK05291        291 AIEEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE------E-----ENGKPVIRISA  352 (449)
T ss_pred             HHHhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh------h-----ccCCceEEEEe
Confidence            6889999999999998877665432 222      2568999999999986432211      1     12347899999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q psy12794         86 KEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~~  103 (106)
                      ++|.|++++++++.+.+.
T Consensus       353 ktg~GI~~L~~~L~~~l~  370 (449)
T PRK05291        353 KTGEGIDELREAIKELAF  370 (449)
T ss_pred             eCCCCHHHHHHHHHHHHh
Confidence            999999999999998764

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.31  E-value=3.1e-11  Score=68.99  Aligned_cols=80  Identities=24%  Similarity=0.226  Sum_probs=60.0

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      ++.++|++++|+|++++.+......+..       ..++|+++++||+|+.+....      ..    .....+++++||
T Consensus        77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~------~~----~~~~~~~~~~Sa  139 (157)
T cd04164          77 AIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL------LS----LLAGKPIIAISA  139 (157)
T ss_pred             HHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc------cc----ccCCCceEEEEC
Confidence            5678999999999998766655432211       256899999999998653321      11    233568999999


Q ss_pred             cCCCChHHHHHHHHHHH
Q psy12794         86 KEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~  102 (106)
                      +++.|+++++++|.+.+
T Consensus       140 ~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         140 KTGEGLDELKEALLELA  156 (157)
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            99999999999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG3883|consensus

Probab=99.31  E-value=5.4e-11  Score=67.62  Aligned_cols=96  Identities=21%  Similarity=0.343  Sum_probs=73.2

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH-HHHHHHhCCCCcCCCceEEEE
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV-AEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      +||+.-+|++++||++.++.||+.....-.++-++.....+|+++++||+|+.+.... ..+.+...    +...+..++
T Consensus        79 rhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa----~rEkvkl~e  154 (198)
T KOG3883|consen   79 RHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWA----KREKVKLWE  154 (198)
T ss_pred             HhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHH----hhhheeEEE
Confidence            6899999999999999999999887754444444555567999999999998543211 12333222    445678999


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++|.++..+-+.|..++..+.
T Consensus       155 Vta~dR~sL~epf~~l~~rl~  175 (198)
T KOG3883|consen  155 VTAMDRPSLYEPFTYLASRLH  175 (198)
T ss_pred             EEeccchhhhhHHHHHHHhcc
Confidence            999999999999999987653

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.29  E-value=5.8e-11  Score=80.99  Aligned_cols=92  Identities=17%  Similarity=0.249  Sum_probs=65.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH---HHHHHHhCCCCcCCCce
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV---AEVHRALGLENLKDRTF   78 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~   78 (106)
                      .|..+++.+|++++|+|+++..+......+.. ...    .+.|+++++||+|+......   .++.+.++.     ...
T Consensus        86 ~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~-~~~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~-----~~~  155 (595)
T TIGR01393        86 EVSRSLAACEGALLLVDAAQGIEAQTLANVYL-ALE----NDLEIIPVINKIDLPSADPERVKKEIEEVIGL-----DAS  155 (595)
T ss_pred             HHHHHHHhCCEEEEEecCCCCCCHhHHHHHHH-HHH----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCC-----Ccc
Confidence            46788999999999999998766655443332 222    35799999999998643211   233333321     112


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++++||++|.|++++++++.+.+.
T Consensus       156 ~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       156 EAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             eEEEeeccCCCCHHHHHHHHHHhCC
Confidence            5899999999999999999988764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG4252|consensus

Probab=99.29  E-value=7.5e-12  Score=72.83  Aligned_cols=95  Identities=22%  Similarity=0.288  Sum_probs=75.2

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEEE
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      ..||+++.+.++||+.+++.||+....|..+..+..  .+.|.++|-||+|+.++.  ...++.....     ...+.+.
T Consensus        87 kAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak-----~l~~Rly  159 (246)
T KOG4252|consen   87 KAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAK-----KLHKRLY  159 (246)
T ss_pred             HHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHH-----Hhhhhhh
Confidence            369999999999999999999999998888877653  579999999999987542  3333433332     2245678


Q ss_pred             EccccCCCChHHHHHHHHHHHhhc
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      .+|+++..|+..+|..|+..+.++
T Consensus       160 RtSvked~NV~~vF~YLaeK~~q~  183 (246)
T KOG4252|consen  160 RTSVKEDFNVMHVFAYLAEKLTQQ  183 (246)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHH
Confidence            899999999999999999876543

>PRK00089 era GTPase Era; Reviewed

Probab=99.28  E-value=4e-11  Score=75.52  Aligned_cols=91  Identities=20%  Similarity=0.287  Sum_probs=62.1

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      .++.++|++++|+|++++.+  ....++...+..   .+.|+++|+||+|+... ....+..+.+..   .....+++.+
T Consensus        80 ~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~i  151 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEKIG--PGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPI  151 (292)
T ss_pred             HHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEe
Confidence            45789999999999987322  222334444443   46899999999998632 222223333321   1124579999


Q ss_pred             cccCCCChHHHHHHHHHHHh
Q psy12794         84 SAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ||+++.|++++++++.+.+.
T Consensus       152 SA~~~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        152 SALKGDNVDELLDVIAKYLP  171 (292)
T ss_pred             cCCCCCCHHHHHHHHHHhCC
Confidence            99999999999999998764

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.27  E-value=4e-11  Score=78.16  Aligned_cols=97  Identities=14%  Similarity=0.117  Sum_probs=63.3

Q ss_pred             hhccCCeEEEEEECC---CcchHHHHHHHHHHHhcC-cCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          6 YYSNTDAIIYVVDSS---DRDRIGISKEELLAMLKE-EELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +++++|++++|+|++   +...+++...++.++... ..+.++|.++|+||+|+.......+..+.+...  .....+++
T Consensus       234 ~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi  311 (390)
T PRK12298        234 HLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVY  311 (390)
T ss_pred             HHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEE
Confidence            578899999999987   344555554444443331 123468999999999986432222222222100  01123689


Q ss_pred             EccccCCCChHHHHHHHHHHHhh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .+||+++.|++++++++.+.+.+
T Consensus       312 ~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        312 LISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             EEECCCCcCHHHHHHHHHHHhhh
Confidence            99999999999999999988753

>PRK00098 GTPase RsgA; Reviewed

Probab=99.27  E-value=1.5e-11  Score=77.70  Aligned_cols=83  Identities=23%  Similarity=0.309  Sum_probs=57.0

Q ss_pred             ccCCeEEEEEECCCcchHHH-HHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          8 SNTDAIIYVVDSSDRDRIGI-SKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      .++|.+++|+|++++..... +..++... ..   .++|+++|+||+|+.... ...+..+.+     ...+++++.+||
T Consensus        79 aniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~~g~~v~~vSA  149 (298)
T PRK00098         79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLALY-----RAIGYDVLELSA  149 (298)
T ss_pred             ecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHHH-----HHCCCeEEEEeC
Confidence            89999999999987755443 34444332 33   568999999999985321 111222222     123468999999


Q ss_pred             cCCCChHHHHHHHH
Q psy12794         86 KEGEGLNDSMDWLS   99 (106)
Q Consensus        86 ~~~~~v~~~~~~l~   99 (106)
                      +++.|++++++.+.
T Consensus       150 ~~g~gi~~L~~~l~  163 (298)
T PRK00098        150 KEGEGLDELKPLLA  163 (298)
T ss_pred             CCCccHHHHHhhcc
Confidence            99999999998764

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.27  E-value=1.1e-10  Score=68.02  Aligned_cols=93  Identities=27%  Similarity=0.383  Sum_probs=74.8

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      ||..+.+++.++|+++|.+.+..+.+ . .+.+++...  ...|+++++||.|+.+....+++.+.+....   ...+++
T Consensus        84 m~~~l~~ga~gaivlVDss~~~~~~a-~-~ii~f~~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi  156 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPITFHA-E-EIIDFLTSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVI  156 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCcchHH-H-HHHHHHhhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCcee
Confidence            68999999999999999998888732 2 355666552  2289999999999998888888888886421   367999


Q ss_pred             EccccCCCChHHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~  101 (106)
                      ..+|.++.|..+..+.+...
T Consensus       157 ~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         157 EIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeecccchhHHHHHHHHHhh
Confidence            99999999999888877654

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.27  E-value=6e-11  Score=67.47  Aligned_cols=93  Identities=16%  Similarity=0.233  Sum_probs=63.2

Q ss_pred             chhhhhccCCeEEEEEECCCc-chHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDR-DRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..++++++.++.++|.... .++.+.. .+......... .+.|+++++||+|+.......+....+.    .....+
T Consensus        66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~  140 (161)
T TIGR00231        66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFA----KLNGEP  140 (161)
T ss_pred             HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHh----hccCCc
Confidence            567778899999999998765 4554444 33333322221 2789999999999865432333444433    223456


Q ss_pred             EEEccccCCCChHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLS   99 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~   99 (106)
                      ++++||.++.|+.+++++|.
T Consensus       141 ~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       141 IIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             eEEeecCCCCCHHHHHHHhh
Confidence            99999999999999999864

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01889 SelB_euk SelB subfamily

Probab=99.26  E-value=7e-11  Score=70.27  Aligned_cols=92  Identities=18%  Similarity=0.151  Sum_probs=58.9

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCC--cCCCceEEE
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLEN--LKDRTFQIF   81 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~--~~~~~~~~~   81 (106)
                      ..+|++++|+|+++.........+.  ....   .+.|+++++||+|+.....    ..++.+.++...  ....+++++
T Consensus        90 ~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi  164 (192)
T cd01889          90 QIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPII  164 (192)
T ss_pred             hhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEE
Confidence            4578999999998754433322111  1121   3579999999999864322    122222221000  012357899


Q ss_pred             EccccCCCChHHHHHHHHHHHhh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++||++|.|+++++++|.+++..
T Consensus       165 ~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         165 PVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             EEeccCCCCHHHHHHHHHhcccc
Confidence            99999999999999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.26  E-value=1e-10  Score=70.62  Aligned_cols=103  Identities=27%  Similarity=0.308  Sum_probs=68.9

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH-HHHHHh----------C
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA-EVHRAL----------G   69 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~----------~   69 (106)
                      ++|+.|+.+++++++++|.+...++.+....+...+......+.|+++++||+|+....... .+.+..          .
T Consensus        69 ~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  148 (219)
T COG1100          69 SLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAP  148 (219)
T ss_pred             HHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHh
Confidence            36899999999999999999865666655545444443322468999999999987542211 111110          0


Q ss_pred             CCCc-CCCceEEEEcccc--CCCChHHHHHHHHHHHh
Q psy12794         70 LENL-KDRTFQIFKTSAK--EGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        70 ~~~~-~~~~~~~~~~sa~--~~~~v~~~~~~l~~~~~  103 (106)
                      .... ......++++|++  ++.++.++|..+...+.
T Consensus       149 ~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~  185 (219)
T COG1100         149 KAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL  185 (219)
T ss_pred             HHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence            0000 1122348999999  99999999999888774

>cd01858 NGP_1 NGP-1

Probab=99.25  E-value=7.8e-11  Score=68.06  Aligned_cols=90  Identities=21%  Similarity=0.210  Sum_probs=59.0

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      .++++|.+++|+|++++....  ...+.+.+... ..++|+++|+||+|+.+.....+..+.+.    +......+.+||
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~----~~~~~~~~~iSa   77 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTR--CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILS----KEYPTIAFHASI   77 (157)
T ss_pred             hhhhCCEEEEEEECCCCcccc--CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHh----cCCcEEEEEeec
Confidence            468999999999998763221  12233444321 23589999999999854322223333333    112334688999


Q ss_pred             cCCCChHHHHHHHHHHH
Q psy12794         86 KEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~  102 (106)
                      +.+.|++++.+.+.+.+
T Consensus        78 ~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          78 NNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             cccccHHHHHHHHHHHH
Confidence            99999999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.25  E-value=4.7e-11  Score=75.13  Aligned_cols=85  Identities=21%  Similarity=0.224  Sum_probs=61.0

Q ss_pred             hccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          7 YSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      +.++|.+++|+|++++. ++..+..++.....    .++|+++|+||+|+.+..........+     ...+.+++.+||
T Consensus        76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~g~~v~~vSA  146 (287)
T cd01854          76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA-----LALGYPVLAVSA  146 (287)
T ss_pred             EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH-----HhCCCeEEEEEC
Confidence            78999999999999887 77777765554332    468999999999986431111111111     123568999999


Q ss_pred             cCCCChHHHHHHHHH
Q psy12794         86 KEGEGLNDSMDWLSN  100 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~  100 (106)
                      +++.|+++++..+..
T Consensus       147 ~~g~gi~~L~~~L~~  161 (287)
T cd01854         147 KTGEGLDELREYLKG  161 (287)
T ss_pred             CCCccHHHHHhhhcc
Confidence            999999999887764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.25  E-value=5.9e-11  Score=71.29  Aligned_cols=99  Identities=21%  Similarity=0.329  Sum_probs=66.7

Q ss_pred             chhhhhccC-CeEEEEEECCCc-chHHHHHHHHHHHhcCcCC--CCCeEEEEeeCCCCCCcCCHHHHHHHhC--------
Q psy12794          2 YWRCYYSNT-DAIIYVVDSSDR-DRIGISKEELLAMLKEEEL--RDAILVILANKQDMKNCMSVAEVHRALG--------   69 (106)
Q Consensus         2 ~~~~~~~~~-d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~--------   69 (106)
                      .|..+++++ +++|+|+|+++. .++.+...++..++.....  .+.|+++++||+|+........+.+.+.        
T Consensus        64 ~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~  143 (203)
T cd04105          64 KLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRE  143 (203)
T ss_pred             HHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHH
Confidence            467789998 999999999987 6777777777666543221  4689999999999865432221111110        


Q ss_pred             -----CC------------------Cc----CCCceEEEEccccCCC-ChHHHHHHHHH
Q psy12794         70 -----LE------------------NL----KDRTFQIFKTSAKEGE-GLNDSMDWLSN  100 (106)
Q Consensus        70 -----~~------------------~~----~~~~~~~~~~sa~~~~-~v~~~~~~l~~  100 (106)
                           ..                  .+    ....+.++++|++.+. |++++.+|+.+
T Consensus       144 ~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         144 SRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             HHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence                 00                  00    1124679999999876 69999998864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.25  E-value=4.7e-11  Score=71.12  Aligned_cols=88  Identities=22%  Similarity=0.177  Sum_probs=54.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCC--CcCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLE--NLKDR   76 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~--~~~~~   76 (106)
                      .|..|++++|++++|+|+++.. ......++.... .   .+.|+++++||+|+.....   ..++.+.+...  .....
T Consensus        81 ~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~-~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (194)
T cd01891          81 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL-E---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL  155 (194)
T ss_pred             HHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH-H---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccC
Confidence            4678899999999999998743 222222232222 2   3689999999999864321   12233332110  01223


Q ss_pred             ceEEEEccccCCCChHHH
Q psy12794         77 TFQIFKTSAKEGEGLNDS   94 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~   94 (106)
                      +++++++||++|.|+.++
T Consensus       156 ~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         156 DFPVLYASAKNGWASLNL  173 (194)
T ss_pred             ccCEEEeehhcccccccc
Confidence            578999999999887433

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.24  E-value=1.4e-10  Score=76.71  Aligned_cols=84  Identities=19%  Similarity=0.237  Sum_probs=60.4

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      .+++++|++++|+|.+++.++++.  ++... ..   .++|+++|+||+|+... ...+..        +..+.+++.+|
T Consensus       278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~-~~---~~~piIlV~NK~Dl~~~-~~~~~~--------~~~~~~~~~vS  342 (442)
T TIGR00450       278 KAIKQADLVIYVLDASQPLTKDDF--LIIDL-NK---SKKPFILVLNKIDLKIN-SLEFFV--------SSKVLNSSNLS  342 (442)
T ss_pred             HHHhhCCEEEEEEECCCCCChhHH--HHHHH-hh---CCCCEEEEEECccCCCc-chhhhh--------hhcCCceEEEE
Confidence            578999999999999988776654  34333 22   36899999999998643 111111        12234688999


Q ss_pred             ccCCCChHHHHHHHHHHHhh
Q psy12794         85 AKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~~~  104 (106)
                      |++ .|++++++.+.+.+.+
T Consensus       343 ak~-~gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       343 AKQ-LKIKALVDLLTQKINA  361 (442)
T ss_pred             Eec-CCHHHHHHHHHHHHHH
Confidence            998 6999999988887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04163 Era Era subfamily

Probab=99.24  E-value=6.6e-11  Score=68.03  Aligned_cols=90  Identities=21%  Similarity=0.295  Sum_probs=60.4

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEEEE
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      ..++.++|++++|+|++++.+  ....++.+.+..   .+.|+++++||+|+... ....+..+.+..   .....++++
T Consensus        77 ~~~~~~~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~  148 (168)
T cd04163          77 WSALKDVDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFP  148 (168)
T ss_pred             HHHHHhCCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEE
Confidence            446889999999999987622  222223333333   35899999999998632 222233333321   122458899


Q ss_pred             ccccCCCChHHHHHHHHHH
Q psy12794         83 TSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~  101 (106)
                      +|++++.|+++++++|.+.
T Consensus       149 ~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         149 ISALKGENVDELLEEIVKY  167 (168)
T ss_pred             EEeccCCChHHHHHHHHhh
Confidence            9999999999999998765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.20  E-value=7.6e-11  Score=80.40  Aligned_cols=89  Identities=25%  Similarity=0.273  Sum_probs=58.0

Q ss_pred             hhhhhc--cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          3 WRCYYS--NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         3 ~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++.|+.  ++|++++|+|.++.+..   ..+..+.. +   .++|+++++||+|+.++.....-.+.+.    +..+.++
T Consensus        64 ~~~~l~~~~aDvvI~VvDat~ler~---l~l~~ql~-~---~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pv  132 (591)
T TIGR00437        64 ARDYLLNEKPDLVVNVVDASNLERN---LYLTLQLL-E---LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPV  132 (591)
T ss_pred             HHHHHhhcCCCEEEEEecCCcchhh---HHHHHHHH-h---cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCE
Confidence            344543  78999999999874322   22222222 2   3689999999999854322111112221    1234689


Q ss_pred             EEccccCCCChHHHHHHHHHHH
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +++||++|+|++++++++.+..
T Consensus       133 v~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       133 VPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PLN00023 GTP-binding protein; Provisional

Probab=99.20  E-value=6.4e-11  Score=75.20  Aligned_cols=57  Identities=18%  Similarity=0.214  Sum_probs=47.6

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC-----------CCCCeEEEEeeCCCCCC
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE-----------LRDAILVILANKQDMKN   57 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~p~ilv~nK~D~~~   57 (106)
                      ++|+.||++++++|+|||++++.+++.+..|+..+.....           ..+.|++||+||+|+..
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~  165 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP  165 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence            3788999999999999999999999999988877765321           12589999999999854

>PRK12288 GTPase RsgA; Reviewed

Probab=99.19  E-value=1.6e-10  Score=74.40  Aligned_cols=87  Identities=23%  Similarity=0.285  Sum_probs=61.8

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKE   87 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~   87 (106)
                      .|+|.+++|++++...++..+..|+... ..   .++|.++|+||+|+.+........+....  ....+++++.+||++
T Consensus       119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~t  192 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSLNIIDRYLVAC-ET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSHT  192 (347)
T ss_pred             EEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCCC
Confidence            5799999999998777888888776533 22   56899999999998643221112221110  022356899999999


Q ss_pred             CCChHHHHHHHHH
Q psy12794         88 GEGLNDSMDWLSN  100 (106)
Q Consensus        88 ~~~v~~~~~~l~~  100 (106)
                      +.|++++++.+..
T Consensus       193 g~GideL~~~L~~  205 (347)
T PRK12288        193 GEGLEELEAALTG  205 (347)
T ss_pred             CcCHHHHHHHHhh
Confidence            9999999998865

>KOG1489|consensus

Probab=99.18  E-value=1.8e-10  Score=72.40  Aligned_cols=88  Identities=24%  Similarity=0.314  Sum_probs=62.2

Q ss_pred             hhccCCeEEEEEECCCc---chHHHHHHHHHHHhc-CcCCCCCeEEEEeeCCCCCCcCCH--HHHHHHhCCCCcCCCceE
Q psy12794          6 YYSNTDAIIYVVDSSDR---DRIGISKEELLAMLK-EEELRDAILVILANKQDMKNCMSV--AEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~   79 (106)
                      +++.|+.++||+|++.+   +.++.+...+.++-. +..+.++|.++|+||+|+++....  .++.+.+.       +..
T Consensus       271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq-------~~~  343 (366)
T KOG1489|consen  271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ-------NPH  343 (366)
T ss_pred             HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC-------CCc
Confidence            46789999999999988   666666654443322 334568999999999998643221  33343333       226


Q ss_pred             EEEccccCCCChHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~  100 (106)
                      ++++||+.++|++++..-|..
T Consensus       344 V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  344 VVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             EEEeeeccccchHHHHHHHhh
Confidence            999999999999998876654

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.18  E-value=2.3e-10  Score=67.91  Aligned_cols=93  Identities=22%  Similarity=0.294  Sum_probs=59.8

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHh-CCCCcCC-CceEE
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRAL-GLENLKD-RTFQI   80 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~-~~~~~~~-~~~~~   80 (106)
                      ..+.+|++++|+|+.+........  .......   .+.|++++.||+|+.....   ..++.+.+ ....... ...++
T Consensus        90 ~~~~~D~ailvVda~~g~~~~~~~--~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v  164 (188)
T PF00009_consen   90 GLRQADIAILVVDANDGIQPQTEE--HLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPV  164 (188)
T ss_dssp             HHTTSSEEEEEEETTTBSTHHHHH--HHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEE
T ss_pred             eecccccceeeeeccccccccccc--ccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceE
Confidence            367899999999998764433222  2222332   4688999999999863211   12222122 1111122 35899


Q ss_pred             EEccccCCCChHHHHHHHHHHHh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +.+||.+|.|++++++.+.+.++
T Consensus       165 i~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  165 IPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             EEEecCCCCCHHHHHHHHHHhCc
Confidence            99999999999999999998765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.18  E-value=3.4e-10  Score=78.82  Aligned_cols=88  Identities=24%  Similarity=0.297  Sum_probs=59.5

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      ..+++.+|++++|+|.++....  .+..+.+.+..   .++|+++|+||+|+....  ....+.+...    .+ ..+++
T Consensus       349 ~~~~~~aD~iL~VvDa~~~~~~--~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~lg----~~-~~~~i  416 (712)
T PRK09518        349 QIAVSLADAVVFVVDGQVGLTS--TDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKLG----LG-EPYPI  416 (712)
T ss_pred             HHHHHhCCEEEEEEECCCCCCH--HHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHcC----CC-CeEEE
Confidence            3468899999999999764332  22234444443   579999999999975432  1222222211    11 34689


Q ss_pred             cccCCCChHHHHHHHHHHHh
Q psy12794         84 SAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ||++|.|++++++++.+.+.
T Consensus       417 SA~~g~GI~eLl~~i~~~l~  436 (712)
T PRK09518        417 SAMHGRGVGDLLDEALDSLK  436 (712)
T ss_pred             ECCCCCCchHHHHHHHHhcc
Confidence            99999999999999998764

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.18  E-value=4.6e-10  Score=76.75  Aligned_cols=92  Identities=18%  Similarity=0.238  Sum_probs=64.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH---HHHHHHhCCCCcCCCce
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV---AEVHRALGLENLKDRTF   78 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~   78 (106)
                      .|..+++.+|++++|+|+++.........+. ... .   .+.|+++++||+|+......   .++.+.++.     ...
T Consensus        90 ~v~~sl~~aD~aILVVDas~gv~~qt~~~~~-~~~-~---~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~-----~~~  159 (600)
T PRK05433         90 EVSRSLAACEGALLVVDASQGVEAQTLANVY-LAL-E---NDLEIIPVLNKIDLPAADPERVKQEIEDVIGI-----DAS  159 (600)
T ss_pred             HHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HHH-H---CCCCEEEEEECCCCCcccHHHHHHHHHHHhCC-----Ccc
Confidence            4778899999999999998765554433322 222 1   36799999999998643211   233333321     123


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .++.+||++|.|++++++++.+.+.
T Consensus       160 ~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        160 DAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHhCc
Confidence            5899999999999999999988765

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.17  E-value=5e-10  Score=73.89  Aligned_cols=87  Identities=24%  Similarity=0.310  Sum_probs=60.9

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCce-EEEE
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTF-QIFK   82 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   82 (106)
                      ..+++++|++++|+|.+++.+..+.  .+.+++..   .++|+++|+||+|+.+....  ..+...      .++ ++++
T Consensus        73 ~~~~~~ad~vl~vvD~~~~~~~~d~--~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~------lg~~~~~~  139 (429)
T TIGR03594        73 EIAIEEADVILFVVDGREGLTPEDE--EIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYS------LGFGEPIP  139 (429)
T ss_pred             HHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHh------cCCCCeEE
Confidence            4568899999999999875444332  23344443   46899999999997643221  122221      122 6899


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||++|.|++++++++.+.+.
T Consensus       140 vSa~~g~gv~~ll~~i~~~l~  160 (429)
T TIGR03594       140 ISAEHGRGIGDLLDAILELLP  160 (429)
T ss_pred             EeCCcCCChHHHHHHHHHhcC
Confidence            999999999999999988764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.15  E-value=6.3e-10  Score=71.93  Aligned_cols=88  Identities=24%  Similarity=0.262  Sum_probs=63.7

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAK   86 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~   86 (106)
                      ..++|.+++|+|+++|..-..+ .-..+.+...+..++|+++|.||+|+.....   ....+..   . .+ ..+.+||+
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~---~-~~-~~v~iSA~  339 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELER---G-SP-NPVFISAK  339 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhh---c-CC-CeEEEEec
Confidence            3579999999999998543333 3456677776667899999999999654322   1122211   1 11 58899999


Q ss_pred             CCCChHHHHHHHHHHHh
Q psy12794         87 EGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        87 ~~~~v~~~~~~l~~~~~  103 (106)
                      +|.|++.+++.+.+.+.
T Consensus       340 ~~~gl~~L~~~i~~~l~  356 (411)
T COG2262         340 TGEGLDLLRERIIELLS  356 (411)
T ss_pred             cCcCHHHHHHHHHHHhh
Confidence            99999999999988775

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.13  E-value=6.8e-10  Score=77.14  Aligned_cols=95  Identities=15%  Similarity=0.193  Sum_probs=63.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc--C--CCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL--K--DRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~   77 (106)
                      +|..++..+|++++|+|+++........ .+. .+..   .+.|+++++||+|+... ...++.+.+.....  .  ...
T Consensus       311 mr~rg~~~aDiaILVVDA~dGv~~QT~E-~I~-~~k~---~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~  384 (742)
T CHL00189        311 MRSRGANVTDIAILIIAADDGVKPQTIE-AIN-YIQA---ANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGD  384 (742)
T ss_pred             HHHHHHHHCCEEEEEEECcCCCChhhHH-HHH-HHHh---cCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCC
Confidence            5677899999999999998743322211 122 2222   46899999999998643 33334333321110  1  123


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHH
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++++++||++|.|++++++++....
T Consensus       385 vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        385 TPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             ceEEEEECCCCCCHHHHHHhhhhhh
Confidence            6899999999999999999987643

>smart00275 G_alpha G protein alpha subunit

Probab=99.12  E-value=7.3e-10  Score=71.30  Aligned_cols=104  Identities=15%  Similarity=0.218  Sum_probs=75.4

Q ss_pred             CchhhhhccCCeEEEEEECCC----------cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc------------
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSD----------RDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC------------   58 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------   58 (106)
                      +.|.+|+.++++++||+|.++          ...+.+....+..+.++....+.|+++++||.|+-..            
T Consensus       199 ~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp  278 (342)
T smart00275      199 KKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFP  278 (342)
T ss_pred             hhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCC
Confidence            469999999999999999986          3467777788888888877788999999999996210            


Q ss_pred             -----CCHHHHHHHhC----CCCc--CCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         59 -----MSVAEVHRALG----LENL--KDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        59 -----~~~~~~~~~~~----~~~~--~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                           .....+.+.+.    ....  ....+..+.++|.+..++..+|+.+.+.+.+
T Consensus       279 ~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~  335 (342)
T smart00275      279 DYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ  335 (342)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence                 11222222221    1111  1245677889999999999999888776653

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.12  E-value=5.5e-10  Score=64.42  Aligned_cols=82  Identities=22%  Similarity=0.293  Sum_probs=53.2

Q ss_pred             CeEEEEEECCCcchHHHHHHHHH-HHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCC
Q psy12794         11 DAIIYVVDSSDRDRIGISKEELL-AMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGE   89 (106)
Q Consensus        11 d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~   89 (106)
                      |.+++|+|+.++.+....  ++. ..+..   .++|+++|+||+|+.+.....+....+.    ......++.+||+++.
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~   71 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQ   71 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCc
Confidence            689999999876544322  232 22222   4689999999999854321112221222    1123568899999999


Q ss_pred             ChHHHHHHHHHH
Q psy12794         90 GLNDSMDWLSNA  101 (106)
Q Consensus        90 ~v~~~~~~l~~~  101 (106)
                      |++++.+.+...
T Consensus        72 gi~~L~~~i~~~   83 (155)
T cd01849          72 GIEKKESAFTKQ   83 (155)
T ss_pred             ChhhHHHHHHHH
Confidence            999999988654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.12  E-value=8.6e-10  Score=72.94  Aligned_cols=84  Identities=21%  Similarity=0.329  Sum_probs=57.9

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCce-EEEE
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTF-QIFK   82 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   82 (106)
                      ..+++++|++++|+|.+++.+..+.  ++..++..   .++|+++++||+|..+.  .....+....      ++ .+++
T Consensus        75 ~~~~~~ad~il~vvd~~~~~~~~~~--~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~l------g~~~~~~  141 (435)
T PRK00093         75 ELAIEEADVILFVVDGRAGLTPADE--EIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSL------GLGEPYP  141 (435)
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhc------CCCCCEE
Confidence            4568899999999999875444322  23334433   36899999999996542  1222232221      22 4789


Q ss_pred             ccccCCCChHHHHHHHHH
Q psy12794         83 TSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~  100 (106)
                      +||++|.|++++++.+..
T Consensus       142 iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        142 ISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             EEeeCCCCHHHHHHHHHh
Confidence            999999999999999886

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.10  E-value=8.9e-10  Score=75.16  Aligned_cols=93  Identities=18%  Similarity=0.187  Sum_probs=60.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc--C--CCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL--K--DRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~   77 (106)
                      +|..++..+|++++|+|+++........ .+. ....   .+.|+++++||+|+++. ...++.+.+.....  .  ...
T Consensus       151 ~r~rga~~aDiaILVVda~dgv~~qT~e-~i~-~~~~---~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~  224 (587)
T TIGR00487       151 MRARGAKVTDIVVLVVAADDGVMPQTIE-AIS-HAKA---ANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGD  224 (587)
T ss_pred             HHHhhhccCCEEEEEEECCCCCCHhHHH-HHH-HHHH---cCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCC
Confidence            5667888999999999998643222221 121 2222   46899999999998643 33334333321110  0  113


Q ss_pred             eEEEEccccCCCChHHHHHHHHH
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~  100 (106)
                      .+++++||++|.|++++++++..
T Consensus       225 ~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       225 TIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             ceEEEEECCCCCChHHHHHhhhh
Confidence            57999999999999999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.08  E-value=8.3e-10  Score=65.58  Aligned_cols=90  Identities=17%  Similarity=0.174  Sum_probs=59.1

Q ss_pred             hhhccC---CeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHH----HHHHhCCCCcCCCc
Q psy12794          5 CYYSNT---DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAE----VHRALGLENLKDRT   77 (106)
Q Consensus         5 ~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~   77 (106)
                      .|++.+   +++++++|.+.+.+..+.  .+.+.+..   .+.|+++++||+|+.+......    +.+.+.     ...
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~-----~~~  168 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALK-----FGD  168 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHH-----hcC
Confidence            445544   678889998765444332  23333332   4689999999999864322222    222222     124


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .+++++||+++.|++++++.+.+.+.+
T Consensus       169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        169 DEVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            578999999999999999999988764

>COG1159 Era GTPase [General function prediction only]

Probab=99.07  E-value=1.2e-09  Score=68.15  Aligned_cols=91  Identities=20%  Similarity=0.236  Sum_probs=65.2

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HHHHHHHhCCCCcCCCceEEEEc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-VAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      ..+.++|+++||+|++.+...  -++++.+.++.   .+.|++++.||+|...... ..+..+.+...   .....++++
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpi  152 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPI  152 (298)
T ss_pred             HHhccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEe
Confidence            457899999999999875333  33345555554   4689999999999765443 23444444321   123389999


Q ss_pred             cccCCCChHHHHHHHHHHHh
Q psy12794         84 SAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ||++|.|++.+.+.+...+.
T Consensus       153 SA~~g~n~~~L~~~i~~~Lp  172 (298)
T COG1159         153 SALKGDNVDTLLEIIKEYLP  172 (298)
T ss_pred             eccccCCHHHHHHHHHHhCC
Confidence            99999999999999988775

>cd00066 G-alpha G protein alpha subunit

Probab=99.07  E-value=1.3e-09  Score=69.50  Aligned_cols=104  Identities=17%  Similarity=0.252  Sum_probs=75.8

Q ss_pred             CchhhhhccCCeEEEEEECCCc----------chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-------------
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDR----------DRIGISKEELLAMLKEEELRDAILVILANKQDMKN-------------   57 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-------------   57 (106)
                      +.|.+|+.++++++||+|.++-          ..+.+....+..+..+....++|+++++||.|+-.             
T Consensus       176 ~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp  255 (317)
T cd00066         176 KKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFP  255 (317)
T ss_pred             hhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCC
Confidence            3699999999999999999863          46777777888888887778899999999999521             


Q ss_pred             -----cCCHHHHHHHhCCC----C-cCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         58 -----CMSVAEVHRALGLE----N-LKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        58 -----~~~~~~~~~~~~~~----~-~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                           ......+.+.+...    . .....+..+.++|.+..++..+|..+.+.+.+
T Consensus       256 ~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~  312 (317)
T cd00066         256 DYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ  312 (317)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence                 11122222222211    0 01345777889999999999999988887754

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG4423|consensus

Probab=99.07  E-value=3.1e-10  Score=66.46  Aligned_cols=97  Identities=19%  Similarity=0.148  Sum_probs=71.7

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCC---CCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCcCCC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL---RDAILVILANKQDMKNCMS---VAEVHRALGLENLKDR   76 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~   76 (106)
                      -+.||+.+++.++|||+++..+|+....|..++-....+   ...|+++..||+|......   ..++.+.-.    +..
T Consensus        92 trVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k----eng  167 (229)
T KOG4423|consen   92 TRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK----ENG  167 (229)
T ss_pred             EEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh----ccC
Confidence            356899999999999999999999888888776543322   3589999999999753211   123333322    222


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .-.++++|+++..++.+..+.|++++.
T Consensus       168 f~gwtets~Kenkni~Ea~r~lVe~~l  194 (229)
T KOG4423|consen  168 FEGWTETSAKENKNIPEAQRELVEKIL  194 (229)
T ss_pred             ccceeeeccccccChhHHHHHHHHHHH
Confidence            346899999999999999999987663

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.06  E-value=6.2e-10  Score=64.21  Aligned_cols=76  Identities=26%  Similarity=0.389  Sum_probs=54.3

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      .+.|++++|+|+++.   +.......++..    .++|++++.||+|....    ...+.+.+.++        ++++.+
T Consensus        77 ~~~D~ii~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg--------~pvi~~  141 (156)
T PF02421_consen   77 EKPDLIIVVVDATNL---ERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG--------VPVIPV  141 (156)
T ss_dssp             TSSSEEEEEEEGGGH---HHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT--------S-EEEE
T ss_pred             cCCCEEEEECCCCCH---HHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC--------CCEEEE
Confidence            589999999998763   322222333332    46999999999996432    34556666664        589999


Q ss_pred             cccCCCChHHHHHHH
Q psy12794         84 SAKEGEGLNDSMDWL   98 (106)
Q Consensus        84 sa~~~~~v~~~~~~l   98 (106)
                      ||.+++|++++++.+
T Consensus       142 sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  142 SARTGEGIDELKDAI  156 (156)
T ss_dssp             BTTTTBTHHHHHHHH
T ss_pred             EeCCCcCHHHHHhhC
Confidence            999999999998764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.06  E-value=1.3e-09  Score=74.40  Aligned_cols=96  Identities=23%  Similarity=0.227  Sum_probs=59.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--------------CHHHHHH-
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--------------SVAEVHR-   66 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------------~~~~~~~-   66 (106)
                      +|..+++.+|++++|+|+++........  ....+..   .+.|+++++||+|+....              ....+.+ 
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e--~i~~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~  159 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQE--ALNILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQN  159 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHH--HHHHHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHH
Confidence            4677889999999999998632222211  1122222   468999999999985311              0001110 


Q ss_pred             ----------HhCCCCc----------CCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         67 ----------ALGLENL----------KDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        67 ----------~~~~~~~----------~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                                .+....+          .....+++.+||++|+|++++.+++....
T Consensus       160 ~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       160 LDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                      1111111          11246899999999999999999886543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK13768 GTPase; Provisional

Probab=99.06  E-value=8.2e-10  Score=68.44  Aligned_cols=93  Identities=16%  Similarity=0.187  Sum_probs=57.8

Q ss_pred             CCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCC-----C-----------
Q psy12794         10 TDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLE-----N-----------   72 (106)
Q Consensus        10 ~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~-----------   72 (106)
                      ++++++|+|.+...+..+... ++....... ..++|+++|+||+|+.+.....+..+.+...     .           
T Consensus       129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  207 (253)
T PRK13768        129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLL  207 (253)
T ss_pred             CeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHH
Confidence            889999999975544433221 111111100 1468999999999986543333333322210     0           


Q ss_pred             -------cC--CCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         73 -------LK--DRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        73 -------~~--~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                             .+  ....+++.+|+++++|++++.+++.+.+.
T Consensus       208 ~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        208 SLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             HHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence                   00  12247899999999999999999988764

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.06  E-value=1.7e-09  Score=71.05  Aligned_cols=94  Identities=16%  Similarity=0.161  Sum_probs=58.3

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~   80 (106)
                      .....+|++++|+|++++.......+.+. .+..  ...+|+++++||+|+.+....    .++.+.+...  ....+++
T Consensus        99 ~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~--~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~i  173 (406)
T TIGR03680        99 SGAALMDGALLVIAANEPCPQPQTKEHLM-ALEI--IGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGT--VAENAPI  173 (406)
T ss_pred             HHHHHCCEEEEEEECCCCccccchHHHHH-HHHH--cCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhc--ccCCCeE
Confidence            44567899999999986431111122222 2222  123679999999998643211    2222222211  1125689


Q ss_pred             EEccccCCCChHHHHHHHHHHHh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++||++|.|+++++++|...+.
T Consensus       174 i~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       174 IPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             EEEECCCCCChHHHHHHHHHhCC
Confidence            99999999999999999987653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.05  E-value=9.9e-10  Score=74.95  Aligned_cols=93  Identities=27%  Similarity=0.253  Sum_probs=58.9

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~   79 (106)
                      .++.++|++++|+|+++...... .+.+ ..+..   .+.| +++++||+|+.+....    .++.+.+.... ...+.+
T Consensus        69 ~g~~~aD~aILVVDa~~G~~~qT-~ehl-~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~-~~~~~~  142 (581)
T TIGR00475        69 AGGGGIDAALLVVDADEGVMTQT-GEHL-AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI-FLKNAK  142 (581)
T ss_pred             hhhccCCEEEEEEECCCCCcHHH-HHHH-HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC-CCCCCc
Confidence            45678999999999987422211 1112 22222   3466 9999999998653221    12222222110 112568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++||++|.|++++++.+.+.+.
T Consensus       143 ii~vSA~tG~GI~eL~~~L~~l~~  166 (581)
T TIGR00475       143 IFKTSAKTGQGIGELKKELKNLLE  166 (581)
T ss_pred             EEEEeCCCCCCchhHHHHHHHHHH
Confidence            999999999999999998877654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.05  E-value=2e-09  Score=75.34  Aligned_cols=93  Identities=19%  Similarity=0.190  Sum_probs=60.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc--C--CCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL--K--DRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~   77 (106)
                      +|..++..+|++++|+|+++........ .+ .....   .+.|+++++||+|+... ....+.+.+.....  .  ...
T Consensus       353 m~~rga~~aDiaILVVdAddGv~~qT~e-~i-~~a~~---~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~  426 (787)
T PRK05306        353 MRARGAQVTDIVVLVVAADDGVMPQTIE-AI-NHAKA---AGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGD  426 (787)
T ss_pred             HHHhhhhhCCEEEEEEECCCCCCHhHHH-HH-HHHHh---cCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCC
Confidence            5667788999999999998743222111 12 22222   46899999999998643 23333332211100  1  123


Q ss_pred             eEEEEccccCCCChHHHHHHHHH
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~  100 (106)
                      ++++++||++|.|++++++++..
T Consensus       427 vp~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        427 TIFVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             ceEEEEeCCCCCCchHHHHhhhh
Confidence            68999999999999999999874

>KOG0096|consensus

Probab=99.03  E-value=2.4e-10  Score=67.00  Aligned_cols=93  Identities=19%  Similarity=0.255  Sum_probs=73.4

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      +.||-+....|++||+++.-++..+.+|..++....  .+.|+++.+||.|............     .....++.++++
T Consensus        77 dgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~k~v~-----~~rkknl~y~~i  149 (216)
T KOG0096|consen   77 DGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKAKPVS-----FHRKKNLQYYEI  149 (216)
T ss_pred             cccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccccccccce-----eeecccceeEEe
Confidence            357888889999999999999999999998887763  3589999999999764331111111     114567899999


Q ss_pred             cccCCCChHHHHHHHHHHHh
Q psy12794         84 SAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ||++..|.+.-|-|+++.+.
T Consensus       150 Saksn~NfekPFl~LarKl~  169 (216)
T KOG0096|consen  150 SAKSNYNFERPFLWLARKLT  169 (216)
T ss_pred             ecccccccccchHHHhhhhc
Confidence            99999999999999998775

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.03  E-value=4e-09  Score=69.11  Aligned_cols=92  Identities=18%  Similarity=0.207  Sum_probs=65.2

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      .+..++.+++|+|.+.+-+-.+  ..+..+..+   .++++++|.||+|+.+.  ...++..+.+......-...+++.+
T Consensus       257 aI~~a~vvllviDa~~~~~~qD--~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         257 AIERADVVLLVIDATEGISEQD--LRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             HHhhcCEEEEEEECCCCchHHH--HHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            3668999999999987644433  335555555   57999999999998654  3344444444332223345689999


Q ss_pred             cccCCCChHHHHHHHHHHH
Q psy12794         84 SAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~~  102 (106)
                      ||++|.|++++++.+....
T Consensus       332 SA~~~~~i~~l~~~i~~~~  350 (444)
T COG1160         332 SALTGQGLDKLFEAIKEIY  350 (444)
T ss_pred             EecCCCChHHHHHHHHHHH
Confidence            9999999999999887644

>cd01856 YlqF YlqF

Probab=99.03  E-value=1.9e-09  Score=63.12  Aligned_cols=86  Identities=17%  Similarity=0.144  Sum_probs=56.7

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      ..++++|.+++|+|++.+....+.  .+...+     .++|.++++||+|+.+.....+..+.+.     .....++.+|
T Consensus        15 ~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~vi~iS   82 (171)
T cd01856          15 EKLKLVDLVIEVRDARIPLSSRNP--LLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKVLFVN   82 (171)
T ss_pred             HHHhhCCEEEEEeeccCccCcCCh--hhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeEEEEE
Confidence            457899999999999765432211  122222     3579999999999853321112222222     1123678999


Q ss_pred             ccCCCChHHHHHHHHHHH
Q psy12794         85 AKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~  102 (106)
                      |+++.|++++.+.+...+
T Consensus        83 a~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          83 AKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             CCCcccHHHHHHHHHHHH
Confidence            999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.02  E-value=9.8e-10  Score=62.47  Aligned_cols=77  Identities=16%  Similarity=0.129  Sum_probs=49.0

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      .++++|++++|+|++++.+..+  ..+.+++.... .++|+++++||+|+.+.....+..+.+.     ..+..++.+||
T Consensus         8 ~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~ii~iSa   79 (141)
T cd01857           8 VVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVVVFFSA   79 (141)
T ss_pred             HHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeEEEEEe
Confidence            4789999999999987654332  12334443321 4689999999999854322222333332     22357889999


Q ss_pred             cCCCC
Q psy12794         86 KEGEG   90 (106)
Q Consensus        86 ~~~~~   90 (106)
                      +++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.01  E-value=3.5e-09  Score=64.61  Aligned_cols=87  Identities=21%  Similarity=0.263  Sum_probs=55.2

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCc-----------
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENL-----------   73 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~-----------   73 (106)
                      .+|++++|+|++.+....+  ..+..++..   .+.|++++.||+|+.+....    .++.+.+.....           
T Consensus       109 ~~D~~llVvda~~g~~~~d--~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~  183 (224)
T cd04165         109 APDYAMLVVAANAGIIGMT--KEHLGLALA---LNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDD  183 (224)
T ss_pred             CCCEEEEEEECCCCCcHHH--HHHHHHHHH---cCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeeccc
Confidence            5899999999876543222  223333333   46899999999997543222    223333331100           


Q ss_pred             ----------CCCceEEEEccccCCCChHHHHHHHHH
Q psy12794         74 ----------KDRTFQIFKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        74 ----------~~~~~~~~~~sa~~~~~v~~~~~~l~~  100 (106)
                                .....+++.+||.+|+|++++...|..
T Consensus       184 ~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         184 DVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             ceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence                      112358999999999999999887753

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.99  E-value=3.9e-09  Score=69.52  Aligned_cols=89  Identities=17%  Similarity=0.185  Sum_probs=55.4

Q ss_pred             cCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEEEEc
Q psy12794          9 NTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      ++|++++|+|++++. .... ...+. .+..  ...+|+++++||+|+.+....    .++.+.+...  .....+++++
T Consensus       108 ~~D~~llVVDa~~~~~~~~t-~~~l~-~l~~--~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~ii~v  181 (411)
T PRK04000        108 LMDGAILVIAANEPCPQPQT-KEHLM-ALDI--IGIKNIVIVQNKIDLVSKERALENYEQIKEFVKGT--VAENAPIIPV  181 (411)
T ss_pred             hCCEEEEEEECCCCCCChhH-HHHHH-HHHH--cCCCcEEEEEEeeccccchhHHHHHHHHHHHhccc--cCCCCeEEEE
Confidence            469999999998643 1111 11121 2222  123578999999998653221    2233332211  1124689999


Q ss_pred             cccCCCChHHHHHHHHHHHh
Q psy12794         84 SAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ||++|.|++++++.|...+.
T Consensus       182 SA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        182 SALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             ECCCCcCHHHHHHHHHHhCC
Confidence            99999999999999988654

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.99  E-value=5.6e-09  Score=68.44  Aligned_cols=85  Identities=22%  Similarity=0.275  Sum_probs=60.9

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      .+..||+++||+|....-+..+  ..+.+++..   .++|+++|.||+|...  .....-+.+.+.     .-+.+.+||
T Consensus        80 Ai~eADvilfvVD~~~Git~~D--~~ia~~Lr~---~~kpviLvvNK~D~~~--~e~~~~efyslG-----~g~~~~ISA  147 (444)
T COG1160          80 AIEEADVILFVVDGREGITPAD--EEIAKILRR---SKKPVILVVNKIDNLK--AEELAYEFYSLG-----FGEPVPISA  147 (444)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHh---cCCCEEEEEEcccCch--hhhhHHHHHhcC-----CCCceEeeh
Confidence            4678999999999976544433  235555553   5799999999999642  223344444321     226889999


Q ss_pred             cCCCChHHHHHHHHHHH
Q psy12794         86 KEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~  102 (106)
                      ..|.|+.++.+.+...+
T Consensus       148 ~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         148 EHGRGIGDLLDAVLELL  164 (444)
T ss_pred             hhccCHHHHHHHHHhhc
Confidence            99999999999999876

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.98  E-value=4.2e-09  Score=66.04  Aligned_cols=87  Identities=15%  Similarity=0.138  Sum_probs=58.2

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      ..++++|.+++|+|+..+.+....  .+.+.+     .++|+++|.||+|+.+........+.+..     .+.+++.+|
T Consensus        17 ~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~vi~iS   84 (276)
T TIGR03596        17 EKLKLVDVVIEVLDARIPLSSRNP--MIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKALAIN   84 (276)
T ss_pred             HHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeEEEEE
Confidence            357789999999999766443221  233433     25799999999998532212222223321     234688999


Q ss_pred             ccCCCChHHHHHHHHHHHh
Q psy12794         85 AKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~~  103 (106)
                      |+++.|++++.+.+.+.+.
T Consensus        85 a~~~~gi~~L~~~i~~~~~  103 (276)
T TIGR03596        85 AKKGKGVKKIIKAAKKLLK  103 (276)
T ss_pred             CCCcccHHHHHHHHHHHHH
Confidence            9999999999988877654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.97  E-value=2.3e-09  Score=65.09  Aligned_cols=84  Identities=19%  Similarity=0.223  Sum_probs=49.0

Q ss_pred             hhccCCeEEEEEECCCcch---HH---HHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHH----HhCCC
Q psy12794          6 YYSNTDAIIYVVDSSDRDR---IG---ISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHR----ALGLE   71 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~----~~~~~   71 (106)
                      ..+.+|++++|+|+++...   +.   .....+ .....  ...+|+++++||+|+...    .....+.+    .+...
T Consensus        97 ~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~  173 (219)
T cd01883          97 GASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART--LGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKV  173 (219)
T ss_pred             HhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH--cCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHc
Confidence            4567999999999987411   01   111111 12222  133789999999998631    11122222    22222


Q ss_pred             CcCCCceEEEEccccCCCChH
Q psy12794         72 NLKDRTFQIFKTSAKEGEGLN   92 (106)
Q Consensus        72 ~~~~~~~~~~~~sa~~~~~v~   92 (106)
                      ......++++.+||++|.|++
T Consensus       174 ~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         174 GYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             CCCcCCceEEEeecCcCCCCC
Confidence            122335789999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.94  E-value=1.9e-09  Score=69.84  Aligned_cols=91  Identities=22%  Similarity=0.323  Sum_probs=57.6

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCce---
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTF---   78 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~---   78 (106)
                      ...+++.++++++|+|+.+....  ....+.+..     .++|+++|+||+|+... .....+.+++... .+..++   
T Consensus        57 l~~~~~~~~~Il~VvD~~d~~~s--~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~-~k~~g~~~~  128 (360)
T TIGR03597        57 LNSLGDSNALIVYVVDIFDFEGS--LIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR-AKELGLKPV  128 (360)
T ss_pred             HhhcccCCcEEEEEEECcCCCCC--ccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH-HHHcCCCcC
Confidence            34567889999999999765321  111233332     35799999999998543 2333333322100 011122   


Q ss_pred             EEEEccccCCCChHHHHHHHHHH
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      .++.+||++|.|++++++.+.+.
T Consensus       129 ~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       129 DIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cEEEecCCCCCCHHHHHHHHHHH
Confidence            58899999999999999998754

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.94  E-value=5.9e-09  Score=73.12  Aligned_cols=84  Identities=18%  Similarity=0.158  Sum_probs=56.4

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKE   87 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~   87 (106)
                      ..+|++++|+|.++..+-   ..+..+. .+   .++|+++++||+|+.+........+.+.    +..+++++.+||.+
T Consensus        84 ~~aD~vI~VvDat~ler~---l~l~~ql-~e---~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA~~  152 (772)
T PRK09554         84 GDADLLINVVDASNLERN---LYLTLQL-LE---LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVSTR  152 (772)
T ss_pred             cCCCEEEEEecCCcchhh---HHHHHHH-HH---cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEeec
Confidence            389999999999875432   2223332 22   4689999999999864322221122222    22346899999999


Q ss_pred             CCChHHHHHHHHHHH
Q psy12794         88 GEGLNDSMDWLSNAL  102 (106)
Q Consensus        88 ~~~v~~~~~~l~~~~  102 (106)
                      |+|++++.+.+.+..
T Consensus       153 g~GIdeL~~~I~~~~  167 (772)
T PRK09554        153 GRGIEALKLAIDRHQ  167 (772)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999887654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.93  E-value=1.9e-09  Score=63.51  Aligned_cols=76  Identities=17%  Similarity=0.208  Sum_probs=49.3

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCcCCCceEEEEcc
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      .++++++|+|.+++-+..+..  +...+..   .++|+++++||+|+.....    ..++.+.++.   .....+++++|
T Consensus       100 ~~~~ii~vvd~~~~~~~~~~~--~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~---~~~~~~v~~~S  171 (179)
T TIGR03598       100 NLKGVVLLMDIRHPLKELDLE--MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK---DADDPSVQLFS  171 (179)
T ss_pred             hhcEEEEEecCCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh---ccCCCceEEEE
Confidence            357999999998754444432  2333333   4689999999999864321    2334444432   11235899999


Q ss_pred             ccCCCChH
Q psy12794         85 AKEGEGLN   92 (106)
Q Consensus        85 a~~~~~v~   92 (106)
                      |++|+|++
T Consensus       172 a~~g~gi~  179 (179)
T TIGR03598       172 SLKKTGID  179 (179)
T ss_pred             CCCCCCCC
Confidence            99999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK09866 hypothetical protein; Provisional

Probab=98.93  E-value=1.3e-08  Score=69.73  Aligned_cols=92  Identities=21%  Similarity=0.149  Sum_probs=59.7

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCC--CcCCCceEEE
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLE--NLKDRTFQIF   81 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~--~~~~~~~~~~   81 (106)
                      .+.++|+++||+|.+...+..+.  .+.+.++... .+.|+++|.||+|..+..  ..+.+.+.+...  ......-.++
T Consensus       255 qL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~-K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIf  331 (741)
T PRK09866        255 QLARASAVLAVLDYTQLKSISDE--EVREAILAVG-QSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIF  331 (741)
T ss_pred             HHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcC-CCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEE
Confidence            57889999999999875444432  2444444311 125999999999975322  133444432211  0011234799


Q ss_pred             EccccCCCChHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~  100 (106)
                      .+||+.|.|++++++.+..
T Consensus       332 PVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        332 PVSSMWGYLANRARHELAN  350 (741)
T ss_pred             EEeCCCCCCHHHHHHHHHh
Confidence            9999999999999998876

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.93  E-value=4.9e-09  Score=59.52  Aligned_cols=80  Identities=18%  Similarity=0.299  Sum_probs=54.6

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC-CcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK-NCMSVAEVHRALGLENLKDRTFQIFKTSAK   86 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~   86 (106)
                      .+||.+++|.|++++.+.-.     -.+...   .++|++=|.||+|+. +....+...+.+.....    -++|.+|+.
T Consensus        62 ~dad~V~ll~dat~~~~~~p-----P~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~----~~if~vS~~  129 (143)
T PF10662_consen   62 QDADVVLLLQDATEPRSVFP-----PGFASM---FNKPVIGVITKIDLPSDDANIERAKKWLKNAGV----KEIFEVSAV  129 (143)
T ss_pred             hhCCEEEEEecCCCCCccCC-----chhhcc---cCCCEEEEEECccCccchhhHHHHHHHHHHcCC----CCeEEEECC
Confidence            48999999999997643210     011111   468999999999997 23344444444442211    146999999


Q ss_pred             CCCChHHHHHHHH
Q psy12794         87 EGEGLNDSMDWLS   99 (106)
Q Consensus        87 ~~~~v~~~~~~l~   99 (106)
                      +|+|++++.++|.
T Consensus       130 ~~eGi~eL~~~L~  142 (143)
T PF10662_consen  130 TGEGIEELKDYLE  142 (143)
T ss_pred             CCcCHHHHHHHHh
Confidence            9999999999874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.93  E-value=6.8e-09  Score=65.98  Aligned_cols=95  Identities=23%  Similarity=0.278  Sum_probs=60.2

Q ss_pred             hhccCCeEEEEEECCCcc---hHHHHHHHHHHHhc-CcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794          6 YYSNTDAIIYVVDSSDRD---RIGISKEELLAMLK-EEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      +++.|.++++|+|++..+   ..++......++-+ ...+.++|.++|+||+|+... ...+...+.+.    +...+..
T Consensus       234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~----~~~~~~~  309 (369)
T COG0536         234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALA----EALGWEV  309 (369)
T ss_pred             HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHH----HhcCCCc
Confidence            467899999999998543   23333332223222 334568999999999996543 22333333333    1112222


Q ss_pred             EE-ccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FK-TSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~-~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +. +||.+++|++++...+.+.+.+
T Consensus       310 ~~~ISa~t~~g~~~L~~~~~~~l~~  334 (369)
T COG0536         310 FYLISALTREGLDELLRALAELLEE  334 (369)
T ss_pred             ceeeehhcccCHHHHHHHHHHHHHH
Confidence            22 9999999999999988887754

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.92  E-value=3.4e-09  Score=70.06  Aligned_cols=86  Identities=22%  Similarity=0.181  Sum_probs=50.8

Q ss_pred             hccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC------HHHHHHHhCCCCcCCCceE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCMS------VAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~   79 (106)
                      +.++|++++|+|++++.+..... .+...+...  ....|+++++||+|+.+...      ..++.+.+.........++
T Consensus       106 ~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~  183 (426)
T TIGR00483       106 ASQADAAVLVVAVGDGEFEVQPQTREHAFLART--LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVP  183 (426)
T ss_pred             hhhCCEEEEEEECCCCCcccCCchHHHHHHHHH--cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccce
Confidence            57899999999998764321111 011112222  12368999999999863211      1233333322212223578


Q ss_pred             EEEccccCCCChHHH
Q psy12794         80 IFKTSAKEGEGLNDS   94 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~   94 (106)
                      ++++||++|.|+.+.
T Consensus       184 ~i~iSA~~g~ni~~~  198 (426)
T TIGR00483       184 FIPISAWNGDNVIKK  198 (426)
T ss_pred             EEEeecccccccccc
Confidence            999999999999863

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG0462|consensus

Probab=98.91  E-value=1.7e-08  Score=67.63  Aligned_cols=88  Identities=16%  Similarity=0.225  Sum_probs=63.8

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCcCCCceEEEE
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      -+.-|+|+++|+|++...-......++.-+ +    .+..+|.|.||+|++.+..   ..++.+.+..     ..-+++.
T Consensus       145 slaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~-----~~~~~i~  214 (650)
T KOG0462|consen  145 SLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSADPERVENQLFELFDI-----PPAEVIY  214 (650)
T ss_pred             hhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC-----CccceEE
Confidence            456799999999998765554444433332 2    4678999999999986532   2344444542     2348999


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||++|.|++++++.+++.++
T Consensus       215 vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  215 VSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             EEeccCccHHHHHHHHHhhCC
Confidence            999999999999999998875

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.90  E-value=9.5e-09  Score=59.14  Aligned_cols=85  Identities=19%  Similarity=0.241  Sum_probs=53.9

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHH----HHHHhCCCCcCCCceEEEEcc
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAE----VHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      +++++++++|.+...+....  .+.+.+..   .+.|+++++||+|+........    ....+..   .....+++++|
T Consensus        81 ~~~~~~~v~d~~~~~~~~~~--~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~S  152 (170)
T cd01876          81 NLKGVVLLIDSRHGPTEIDL--EMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKL---FEIDPPIILFS  152 (170)
T ss_pred             hhhEEEEEEEcCcCCCHhHH--HHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh---ccCCCceEEEe
Confidence            45788999998765322221  12233333   3579999999999853322211    2222210   12345788999


Q ss_pred             ccCCCChHHHHHHHHHH
Q psy12794         85 AKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~  101 (106)
                      |+++.|+.+++++|.+.
T Consensus       153 a~~~~~~~~l~~~l~~~  169 (170)
T cd01876         153 SLKGQGIDELRALIEKW  169 (170)
T ss_pred             cCCCCCHHHHHHHHHHh
Confidence            99999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=98.88  E-value=4.2e-09  Score=57.89  Aligned_cols=50  Identities=24%  Similarity=0.389  Sum_probs=37.2

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHH---HHHHhcCcCCCCCeEEEEeeCCC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEE---LLAMLKEEELRDAILVILANKQD   54 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~p~ilv~nK~D   54 (106)
                      |..++.++|++++|||++++.++..+.++   +......  ..+.|+++|+||.|
T Consensus        67 ~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   67 HQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             SHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             ccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            45568899999999999999999887544   3333221  14599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.88  E-value=1.2e-08  Score=70.18  Aligned_cols=91  Identities=23%  Similarity=0.228  Sum_probs=57.2

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCCHH----HHHHHhCCCCcCCCceEE
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMSVA----EVHRALGLENLKDRTFQI   80 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~   80 (106)
                      .+.++|++++|+|++....... . .....+..   .+.| +++|+||+|+.+.....    ++.+.+...  .....++
T Consensus        71 g~~~~D~~lLVVda~eg~~~qT-~-ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~--~~~~~~i  143 (614)
T PRK10512         71 GVGGIDHALLVVACDDGVMAQT-R-EHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREY--GFAEAKL  143 (614)
T ss_pred             HhhcCCEEEEEEECCCCCcHHH-H-HHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhc--CCCCCcE
Confidence            3678999999999986432221 1 12223332   2344 68999999986432222    233333211  1123689


Q ss_pred             EEccccCCCChHHHHHHHHHHHh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +.+||++|.|++++++.|.+...
T Consensus       144 i~VSA~tG~gI~~L~~~L~~~~~  166 (614)
T PRK10512        144 FVTAATEGRGIDALREHLLQLPE  166 (614)
T ss_pred             EEEeCCCCCCCHHHHHHHHHhhc
Confidence            99999999999999999987543

>KOG0090|consensus

Probab=98.86  E-value=3.9e-08  Score=58.95  Aligned_cols=92  Identities=25%  Similarity=0.421  Sum_probs=62.0

Q ss_pred             cCCeEEEEEECCC-cchHHHHHHHHHHHhcCcC--CCCCeEEEEeeCCCCCCcCCHHHHHHHhC----------------
Q psy12794          9 NTDAIIYVVDSSD-RDRIGISKEELLAMLKEEE--LRDAILVILANKQDMKNCMSVAEVHRALG----------------   69 (106)
Q Consensus         9 ~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~~~~----------------   69 (106)
                      ++.++|||+|... .....+..++++..+....  ...+|+++++||.|+..+...+.+.+.+.                
T Consensus       108 ~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~  187 (238)
T KOG0090|consen  108 SAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSI  187 (238)
T ss_pred             cceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            7899999999863 3456666677777776542  35689999999999854433222211110                


Q ss_pred             -------------------CCCcCCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794         70 -------------------LENLKDRTFQIFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        70 -------------------~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                                         ...+....+.|.++|++++ +++++.+|+.+.
T Consensus       188 ~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  188 SDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                               0011123467999999998 999999998765

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.86  E-value=2.9e-08  Score=65.70  Aligned_cols=89  Identities=20%  Similarity=0.291  Sum_probs=63.9

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---CHHHHHHHhCCCCcCCCceEEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM---SVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +.+.-|.|+++|+|+++.-.-..+.+.+.- +.    .+..++-|.||+|++.+.   ...++.+.++..     .-..+
T Consensus        95 RSLAACEGalLvVDAsQGveAQTlAN~YlA-le----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid-----~~dav  164 (603)
T COG0481          95 RSLAACEGALLVVDASQGVEAQTLANVYLA-LE----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGID-----ASDAV  164 (603)
T ss_pred             hhHhhCCCcEEEEECccchHHHHHHHHHHH-HH----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCC-----cchhe
Confidence            346679999999999876443333332222 22    468899999999998653   234566666643     23678


Q ss_pred             EccccCCCChHHHHHHHHHHHh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .+||++|.|++++++.+++.+.
T Consensus       165 ~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         165 LVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             eEecccCCCHHHHHHHHHhhCC
Confidence            9999999999999999998875

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.86  E-value=1.7e-08  Score=63.62  Aligned_cols=87  Identities=14%  Similarity=0.159  Sum_probs=57.8

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      ..++.+|++++|+|+..+.+...  ..+.+...     ++|.++|.||+|+.+........+.+.     ..+.+++.+|
T Consensus        20 ~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi~vS   87 (287)
T PRK09563         20 ENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKALAIN   87 (287)
T ss_pred             HHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEEEEE
Confidence            34678999999999976644322  12333332     589999999999853211122222221     1134678999


Q ss_pred             ccCCCChHHHHHHHHHHHh
Q psy12794         85 AKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~~  103 (106)
                      |+++.|++++.+.+...+.
T Consensus        88 a~~~~gi~~L~~~l~~~l~  106 (287)
T PRK09563         88 AKKGQGVKKILKAAKKLLK  106 (287)
T ss_pred             CCCcccHHHHHHHHHHHHH
Confidence            9999999999998877654

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.85  E-value=4.1e-08  Score=60.25  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=37.0

Q ss_pred             CeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         44 AILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        44 ~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      .|+++|+||+|+.+   ..+......       ...++++||+++.|++++++.+.+.+
T Consensus       177 ~p~iiV~NK~Dl~~---~~~~~~~~~-------~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         177 IPCLYVYNKIDLIS---IEELDLLAR-------QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             eeEEEEEECccCCC---HHHHHHHhc-------CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence            69999999999853   223332221       13588999999999999999998866

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=6.1e-08  Score=64.65  Aligned_cols=89  Identities=24%  Similarity=0.231  Sum_probs=59.3

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcC----CCceEEEEc
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLK----DRTFQIFKT   83 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   83 (106)
                      .=+|.+|+|+|.++.--++...  -.+..+.   .+.|++++.||+|.++. ....+...+....+.    .....++.+
T Consensus        77 ~vtDIaILVVa~dDGv~pQTiE--AI~hak~---a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~Vpv  150 (509)
T COG0532          77 SVTDIAILVVAADDGVMPQTIE--AINHAKA---AGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPV  150 (509)
T ss_pred             ccccEEEEEEEccCCcchhHHH--HHHHHHH---CCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEe
Confidence            3479999999998753333222  1222333   68999999999998753 333443333322221    234689999


Q ss_pred             cccCCCChHHHHHHHHHHH
Q psy12794         84 SAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~~  102 (106)
                      ||++|+|+.++++.+....
T Consensus       151 SA~tg~Gi~eLL~~ill~a  169 (509)
T COG0532         151 SAKTGEGIDELLELILLLA  169 (509)
T ss_pred             eccCCCCHHHHHHHHHHHH
Confidence            9999999999999877543

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.85  E-value=3e-08  Score=65.26  Aligned_cols=84  Identities=20%  Similarity=0.278  Sum_probs=59.0

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      ..++||.+++|+|.+.+.+-.+..  +.+    ....++|+++|.||+|+.+....... + .      ..+.+++.+||
T Consensus       293 ~i~~ADlvL~v~D~~~~~~~~d~~--~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-~-~------~~~~~~i~iSa  358 (454)
T COG0486         293 AIEEADLVLFVLDASQPLDKEDLA--LIE----LLPKKKPIIVVLNKADLVSKIELESE-K-L------ANGDAIISISA  358 (454)
T ss_pred             HHHhCCEEEEEEeCCCCCchhhHH--HHH----hcccCCCEEEEEechhcccccccchh-h-c------cCCCceEEEEe
Confidence            467899999999998863222221  222    11257999999999999765432222 1 1      12337899999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q psy12794         86 KEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++|++.+.+.+.+.+.
T Consensus       359 ~t~~Gl~~L~~~i~~~~~  376 (454)
T COG0486         359 KTGEGLDALREAIKQLFG  376 (454)
T ss_pred             cCccCHHHHHHHHHHHHh
Confidence            999999999999887664

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.84  E-value=6.2e-08  Score=66.37  Aligned_cols=91  Identities=27%  Similarity=0.279  Sum_probs=57.4

Q ss_pred             chhhhhccCCeEEEEEECCC---cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--------------HHH-
Q psy12794          2 YWRCYYSNTDAIIYVVDSSD---RDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS--------------VAE-   63 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--------------~~~-   63 (106)
                      +|..+++.+|++++|+|+++   +.++..+.     .+..   .+.|+++++||+|+.....              ... 
T Consensus        87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v  158 (586)
T PRK04004         87 LRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV  158 (586)
T ss_pred             HHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence            35566788999999999986   33333322     2222   4689999999999742100              000 


Q ss_pred             ----------HHHHhCCCCcC----------CCceEEEEccccCCCChHHHHHHHHH
Q psy12794         64 ----------VHRALGLENLK----------DRTFQIFKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        64 ----------~~~~~~~~~~~----------~~~~~~~~~sa~~~~~v~~~~~~l~~  100 (106)
                                +...+....+.          ....+++++||.+|+|++++.+.+..
T Consensus       159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence                      11111111110          13468999999999999999888764

>PRK10218 GTP-binding protein; Provisional

Probab=98.83  E-value=2.7e-08  Score=68.23  Aligned_cols=97  Identities=16%  Similarity=0.109  Sum_probs=63.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCc--CCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLENL--KDR   76 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~   76 (106)
                      .|..+++.+|++++|+|+++...... ...+.....    .+.|.+++.||+|+.....   ..++.+.+.....  ...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~  158 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL  158 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence            46788999999999999987533322 222322222    4678899999999865322   2344444321111  123


Q ss_pred             ceEEEEccccCCC----------ChHHHHHHHHHHHh
Q psy12794         77 TFQIFKTSAKEGE----------GLNDSMDWLSNALQ  103 (106)
Q Consensus        77 ~~~~~~~sa~~~~----------~v~~~~~~l~~~~~  103 (106)
                      .++++.+||.+|.          |+..+++.+.+.+.
T Consensus       159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            4789999999998          57888888877664

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.82  E-value=3.4e-08  Score=67.71  Aligned_cols=96  Identities=18%  Similarity=0.196  Sum_probs=63.9

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCc--CCCc
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLENL--KDRT   77 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~   77 (106)
                      +..+++.+|++++|+|+++.. ......++.....    .+.|+++++||+|+.....   ..++.+.+.....  ....
T Consensus        81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~  155 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLD  155 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccccc
Confidence            566889999999999998643 2233334444332    4679999999999864321   2233333321111  1234


Q ss_pred             eEEEEccccCCC----------ChHHHHHHHHHHHh
Q psy12794         78 FQIFKTSAKEGE----------GLNDSMDWLSNALQ  103 (106)
Q Consensus        78 ~~~~~~sa~~~~----------~v~~~~~~l~~~~~  103 (106)
                      ++++.+||++|.          |+..+++.+.+.+.
T Consensus       156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             CcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            689999999995          79999999988765

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.81  E-value=2.3e-08  Score=66.18  Aligned_cols=87  Identities=23%  Similarity=0.235  Sum_probs=50.4

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC------HHHHHHHhCCCCcCCCceEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS------VAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~   80 (106)
                      +.++|++++|+|++++.+......+...+....  ..+|+++++||+|+.+...      ..++.+.+..........++
T Consensus       105 ~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~i  182 (425)
T PRK12317        105 ASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPF  182 (425)
T ss_pred             hhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceE
Confidence            467999999999986212211111122222221  2357999999999864211      12333333221112234689


Q ss_pred             EEccccCCCChHHHH
Q psy12794         81 FKTSAKEGEGLNDSM   95 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~   95 (106)
                      +.+||++|.|+++..
T Consensus       183 i~iSA~~g~gi~~~~  197 (425)
T PRK12317        183 IPVSAFEGDNVVKKS  197 (425)
T ss_pred             EEeecccCCCccccc
Confidence            999999999998743

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.77  E-value=7.1e-08  Score=57.38  Aligned_cols=89  Identities=13%  Similarity=0.152  Sum_probs=61.1

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEEEEcc
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      +..++++++|...+  ..+.+..+.+++..   .+.|+++++||+|.......    ..+.+.+....  .....++..|
T Consensus       106 ~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~--~~~~~~~~~s  178 (200)
T COG0218         106 NLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP--PDDQWVVLFS  178 (200)
T ss_pred             hheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC--CccceEEEEe
Confidence            46789999999554  44445556677666   67999999999997653222    34444444221  1111278889


Q ss_pred             ccCCCChHHHHHHHHHHHhh
Q psy12794         85 AKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~~~  104 (106)
                      +.++.|++++...|.+.+..
T Consensus       179 s~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         179 SLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             cccccCHHHHHHHHHHHhhc
Confidence            99999999999999887754

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.77  E-value=1.2e-07  Score=68.27  Aligned_cols=92  Identities=24%  Similarity=0.236  Sum_probs=55.6

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC------------------HHHHHH
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS------------------VAEVHR   66 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------------------~~~~~~   66 (106)
                      ..+..+|++++|+|+++........  ....+..   .++|+++++||+|+.....                  ..++.+
T Consensus       545 ~g~~~aDivlLVVDa~~Gi~~qT~e--~I~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~  619 (1049)
T PRK14845        545 RGGSLADLAVLVVDINEGFKPQTIE--AINILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI  619 (1049)
T ss_pred             hhcccCCEEEEEEECcccCCHhHHH--HHHHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence            3567799999999998632221111  1122222   3689999999999853211                  011110


Q ss_pred             H-------hCCCCc----------CCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794         67 A-------LGLENL----------KDRTFQIFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        67 ~-------~~~~~~----------~~~~~~~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      .       +....+          .....+++++||++|+|++++.+++...
T Consensus       620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence            0       111100          1235689999999999999999888644

>PRK01889 GTPase RsgA; Reviewed

Probab=98.76  E-value=1.2e-07  Score=61.47  Aligned_cols=84  Identities=24%  Similarity=0.239  Sum_probs=55.4

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAK   86 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~   86 (106)
                      ..|+|.+++|+++..+.....++.++... ..   .+.|.++|+||+|+.+.  ..+..+.+...   ..+.+++.+|++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a-~~---~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~  180 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALA-WE---SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL  180 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHH-HH---cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence            47899999999997444444444433322 22   46777899999999643  11122222111   235688999999


Q ss_pred             CCCChHHHHHHHH
Q psy12794         87 EGEGLNDSMDWLS   99 (106)
Q Consensus        87 ~~~~v~~~~~~l~   99 (106)
                      ++.|++++..++.
T Consensus       181 ~g~gl~~L~~~L~  193 (356)
T PRK01889        181 DGEGLDVLAAWLS  193 (356)
T ss_pred             CCccHHHHHHHhh
Confidence            9999999988874

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.76  E-value=1.4e-07  Score=58.08  Aligned_cols=96  Identities=18%  Similarity=0.287  Sum_probs=63.6

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---CHHHHHHHhCCC--------
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM---SVAEVHRALGLE--------   71 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~~~~~~~--------   71 (106)
                      |..+++.+|++++|+|+++..... ...++ +....   .++|+++++||+|+....   ...++.+.++..        
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~-~~~~~---~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~  155 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ-TRILW-RLLRK---LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG  155 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH-HHHHH-HHHHH---cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence            567899999999999998764432 22223 33333   468999999999986421   122333333210        


Q ss_pred             ----------------------------------Cc--------------CCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         72 ----------------------------------NL--------------KDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        72 ----------------------------------~~--------------~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                                                        .+              ...-+|++..||.++.|+..+++.+...++
T Consensus       156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p  235 (237)
T cd04168         156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP  235 (237)
T ss_pred             EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence                                              00              112368999999999999999999988764

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1707|consensus

Probab=98.75  E-value=9.2e-09  Score=69.11  Aligned_cols=95  Identities=13%  Similarity=0.112  Sum_probs=68.6

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCC--CCCeEEEEeeCCCCCCcCCH--HH-HHHHhCCCCcCCCce
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL--RDAILVILANKQDMKNCMSV--AE-VHRALGLENLKDRTF   78 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~--~~-~~~~~~~~~~~~~~~   78 (106)
                      ++=++.+|++.++++++++.+++.+...|..+++....  .+.|+|+||||+|+......  +. +...+.    ....+
T Consensus        74 ~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~----~f~Ei  149 (625)
T KOG1707|consen   74 RKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMI----AFAEI  149 (625)
T ss_pred             HHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHH----HhHHH
Confidence            34578899999999999999999999888787776442  36899999999998654321  11 221111    11112


Q ss_pred             -EEEEccccCCCChHHHHHHHHHHH
Q psy12794         79 -QIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        79 -~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                       ..++|||++..++.++|....+.+
T Consensus       150 EtciecSA~~~~n~~e~fYyaqKaV  174 (625)
T KOG1707|consen  150 ETCIECSALTLANVSELFYYAQKAV  174 (625)
T ss_pred             HHHHhhhhhhhhhhHhhhhhhhhee
Confidence             478999999999999998766543

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.72  E-value=8.3e-08  Score=64.03  Aligned_cols=91  Identities=15%  Similarity=0.199  Sum_probs=56.5

Q ss_pred             hccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEEE
Q psy12794          7 YSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~   81 (106)
                      ...+|++++|+|++.+. ... ..+.+ ......  .-++++++.||+|+.+....    .++.+.+...  .....+++
T Consensus       138 ~~~~D~alLVVda~~g~~~~q-T~ehl-~i~~~l--gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~--~~~~~~ii  211 (460)
T PTZ00327        138 AAVMDAALLLIAANESCPQPQ-TSEHL-AAVEIM--KLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGT--IADNAPII  211 (460)
T ss_pred             HhhCCEEEEEEECCCCccchh-hHHHH-HHHHHc--CCCcEEEEEecccccCHHHHHHHHHHHHHHHHhh--ccCCCeEE
Confidence            34689999999998641 221 11112 222221  23578999999998642221    2233322211  12356899


Q ss_pred             EccccCCCChHHHHHHHHHHHh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .+||.+|.|++.+++.|.+.+.
T Consensus       212 pVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        212 PISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             EeeCCCCCCHHHHHHHHHhhCC
Confidence            9999999999999999986553

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.68  E-value=2.6e-07  Score=55.77  Aligned_cols=85  Identities=18%  Similarity=0.106  Sum_probs=47.8

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--HHHHHHHhCC--CCcCCCceEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS--VAEVHRALGL--ENLKDRTFQI   80 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~--~~~~~~~~~~   80 (106)
                      .+++.+|++++|+|++++..-...  ....+....  ..+++++++||+|+.....  ...+...+..  ..+.....++
T Consensus        96 ~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i  171 (208)
T cd04166          96 TGASTADLAILLVDARKGVLEQTR--RHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITF  171 (208)
T ss_pred             HhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceE
Confidence            457899999999999865322211  122222221  2246788999999864211  1112111110  0001123579


Q ss_pred             EEccccCCCChHH
Q psy12794         81 FKTSAKEGEGLND   93 (106)
Q Consensus        81 ~~~sa~~~~~v~~   93 (106)
                      +.+||++|.|+.+
T Consensus       172 i~iSA~~g~ni~~  184 (208)
T cd04166         172 IPISALDGDNVVS  184 (208)
T ss_pred             EEEeCCCCCCCcc
Confidence            9999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.65  E-value=5.1e-07  Score=54.08  Aligned_cols=80  Identities=23%  Similarity=0.224  Sum_probs=48.0

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCC-H----HHHHHHhCCCCcCCCceEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMS-V----AEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~----~~~~~~~~~~~~~~~~~~~   80 (106)
                      +..+|++++|+|++......  ...+...+..   .++| ++++.||+|+..... .    .++.+.+..........++
T Consensus        86 ~~~~D~~ilVvda~~g~~~~--~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~i  160 (195)
T cd01884          86 AAQMDGAILVVSATDGPMPQ--TREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPI  160 (195)
T ss_pred             hhhCCEEEEEEECCCCCcHH--HHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeE
Confidence            56799999999997643222  2122233333   3455 779999999853211 1    1233333222222235789


Q ss_pred             EEccccCCCCh
Q psy12794         81 FKTSAKEGEGL   91 (106)
Q Consensus        81 ~~~sa~~~~~v   91 (106)
                      +.+||++|.|.
T Consensus       161 ipiSa~~g~n~  171 (195)
T cd01884         161 VRGSALKALEG  171 (195)
T ss_pred             EEeeCccccCC
Confidence            99999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00101 ureG urease accessory protein UreG

Probab=98.64  E-value=2.3e-07  Score=55.71  Aligned_cols=82  Identities=21%  Similarity=0.274  Sum_probs=53.2

Q ss_pred             CCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794         10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQIFKTSAKE   87 (106)
Q Consensus        10 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa~~   87 (106)
                      +|.++.|+|+.+..+.   ......   .   ....=++++||+|+.+.  .....+.+.....   ....+++++||++
T Consensus       113 ~~~~i~vvD~~~~~~~---~~~~~~---q---i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~---~~~~~i~~~Sa~~  180 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKI---PRKGGP---G---ITRSDLLVINKIDLAPMVGADLGVMERDAKKM---RGEKPFIFTNLKT  180 (199)
T ss_pred             hCcEEEEEEcchhhhh---hhhhHh---H---hhhccEEEEEhhhccccccccHHHHHHHHHHh---CCCCCEEEEECCC
Confidence            5779999998754332   111111   1   11233899999998742  2333444444321   2356899999999


Q ss_pred             CCChHHHHHHHHHHHh
Q psy12794         88 GEGLNDSMDWLSNALQ  103 (106)
Q Consensus        88 ~~~v~~~~~~l~~~~~  103 (106)
                      |+|++++++++.+...
T Consensus       181 g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       181 KEGLDTVIDWIEHYAL  196 (199)
T ss_pred             CCCHHHHHHHHHhhcC
Confidence            9999999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG1145|consensus

Probab=98.61  E-value=1.3e-06  Score=59.05  Aligned_cols=87  Identities=22%  Similarity=0.195  Sum_probs=57.7

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc----CCCceEEEEcc
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL----KDRTFQIFKTS   84 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s   84 (106)
                      -+|.+++|+..++.--.....  -....+.   .+.|++++.||+|.++. ..+.+.+.+.....    -....+++++|
T Consensus       224 vtDIvVLVVAadDGVmpQT~E--aIkhAk~---A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiS  297 (683)
T KOG1145|consen  224 VTDIVVLVVAADDGVMPQTLE--AIKHAKS---ANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPIS  297 (683)
T ss_pred             cccEEEEEEEccCCccHhHHH--HHHHHHh---cCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEee
Confidence            479999999987653222211  2223333   68999999999998754 34444333332221    12457899999


Q ss_pred             ccCCCChHHHHHHHHHH
Q psy12794         85 AKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~  101 (106)
                      |++|+|++.+-+.+..+
T Consensus       298 Al~g~nl~~L~eaill~  314 (683)
T KOG1145|consen  298 ALTGENLDLLEEAILLL  314 (683)
T ss_pred             cccCCChHHHHHHHHHH
Confidence            99999999998877654

>PRK13796 GTPase YqeH; Provisional

Probab=98.61  E-value=1.2e-07  Score=61.75  Aligned_cols=87  Identities=20%  Similarity=0.274  Sum_probs=53.0

Q ss_pred             ccCC-eEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCc---eEEEE
Q psy12794          8 SNTD-AIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRT---FQIFK   82 (106)
Q Consensus         8 ~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~   82 (106)
                      ...+ .+++|+|+.+....  ....+.++.     .++|+++|+||+|+... ....++.+..... .+..+   ..++.
T Consensus        67 ~~~~~lIv~VVD~~D~~~s--~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~-~k~~g~~~~~v~~  138 (365)
T PRK13796         67 GDSDALVVNVVDIFDFNGS--WIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQE-AKELGLRPVDVVL  138 (365)
T ss_pred             cccCcEEEEEEECccCCCc--hhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHH-HHhcCCCcCcEEE
Confidence            3445 88999999764311  111233332     35799999999998542 2223333221100 01112   25889


Q ss_pred             ccccCCCChHHHHHHHHHHH
Q psy12794         83 TSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +||+++.|++++++.+.+..
T Consensus       139 vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        139 ISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             EECCCCCCHHHHHHHHHHhc
Confidence            99999999999999987653

>KOG1673|consensus

Probab=98.57  E-value=2.3e-07  Score=53.20  Aligned_cols=96  Identities=14%  Similarity=0.113  Sum_probs=63.3

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH---HHHHHHhCCCCcCCCceEE
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV---AEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~   80 (106)
                      +-..+++-+++|+||.+++.+...+..|+... ...+....| +++|+|.|+--....   ..+......+ .+-.+.+.
T Consensus        87 Piac~dsvaIlFmFDLt~r~TLnSi~~WY~QA-r~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~Y-Ak~mnAsL  163 (205)
T KOG1673|consen   87 PIACKDSVAILFMFDLTRRSTLNSIKEWYRQA-RGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKY-AKVMNASL  163 (205)
T ss_pred             ceeecCcEEEEEEEecCchHHHHHHHHHHHHH-hccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHH-HHHhCCcE
Confidence            33567888999999999999999988766554 333334466 667999995322111   1122111110 02335588


Q ss_pred             EEccccCCCChHHHHHHHHHHH
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +.||+....|+.++|..+...+
T Consensus       164 ~F~Sts~sINv~KIFK~vlAkl  185 (205)
T KOG1673|consen  164 FFCSTSHSINVQKIFKIVLAKL  185 (205)
T ss_pred             EEeeccccccHHHHHHHHHHHH
Confidence            9999999999999998776544

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.54  E-value=2.1e-07  Score=54.94  Aligned_cols=57  Identities=33%  Similarity=0.450  Sum_probs=38.7

Q ss_pred             hhccCCeEEEEEECCC-cchHHHHHHHHHHHhcCcC--CCCCeEEEEeeCCCCCCcCCHH
Q psy12794          6 YYSNTDAIIYVVDSSD-RDRIGISKEELLAMLKEEE--LRDAILVILANKQDMKNCMSVA   62 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~   62 (106)
                      |..++.++|||+|.+. +....+..++++.++....  ....|+++++||.|+..+....
T Consensus        72 ~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~  131 (181)
T PF09439_consen   72 YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPK  131 (181)
T ss_dssp             HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HH
T ss_pred             chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHH
Confidence            5778999999999974 4456777777777776443  2468999999999987654433

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK12736 elongation factor Tu; Reviewed

Probab=98.52  E-value=1.1e-06  Score=57.86  Aligned_cols=91  Identities=20%  Similarity=0.267  Sum_probs=53.5

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCCH-----HHHHHHhCCCCcCCCceEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMSV-----AEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~   80 (106)
                      ...+|++++|+|++....... .+.+ .+...   .++| ++++.||+|+.+....     .++.+.+..........++
T Consensus        96 ~~~~d~~llVvd~~~g~~~~t-~~~~-~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i  170 (394)
T PRK12736         96 AAQMDGAILVVAATDGPMPQT-REHI-LLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPV  170 (394)
T ss_pred             HhhCCEEEEEEECCCCCchhH-HHHH-HHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccE
Confidence            356799999999976432221 1122 22322   3566 6789999998632211     1233333221112234689


Q ss_pred             EEccccCCC--------ChHHHHHHHHHHH
Q psy12794         81 FKTSAKEGE--------GLNDSMDWLSNAL  102 (106)
Q Consensus        81 ~~~sa~~~~--------~v~~~~~~l~~~~  102 (106)
                      +.+||++|.        ++.++++.+.+.+
T Consensus       171 i~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        171 IRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             EEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence            999999983        5677777776654

>KOG1423|consensus

Probab=98.51  E-value=9.7e-07  Score=55.88  Aligned_cols=94  Identities=21%  Similarity=0.140  Sum_probs=59.4

Q ss_pred             hhhccCCeEEEEEECCCcchHHHH--HHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---------------C--HHHHH
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGIS--KEELLAMLKEEELRDAILVILANKQDMKNCM---------------S--VAEVH   65 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---------------~--~~~~~   65 (106)
                      +...++|.++.|+|++++.....-  ...+..+      ...|.++|.||+|...+.               .  ..++.
T Consensus       151 ~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~  224 (379)
T KOG1423|consen  151 DAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ  224 (379)
T ss_pred             HHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence            456789999999999864332211  1112233      468999999999964321               1  12333


Q ss_pred             HHhCCCC-----cCCC----ceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         66 RALGLEN-----LKDR----TFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        66 ~~~~~~~-----~~~~----~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +.+....     ....    .-.+|.+||++|.|++++.++|..++..
T Consensus       225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence            3333111     0011    1258999999999999999999987753

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.50  E-value=3.7e-07  Score=55.04  Aligned_cols=57  Identities=23%  Similarity=0.376  Sum_probs=40.7

Q ss_pred             CCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         43 DAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        43 ~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +.|.++++||+|+.+..  ...+..+.+..   .....+++.+||++|.|++++++++.++.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            46889999999986532  22333333321   11346899999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0082|consensus

Probab=98.49  E-value=2.3e-06  Score=55.23  Aligned_cols=103  Identities=17%  Similarity=0.283  Sum_probs=72.6

Q ss_pred             chhhhhccCCeEEEEEECCCc----------chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-------------
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDR----------DRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-------------   58 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-------------   58 (106)
                      -|.|.+.++++++||+++++-          +.+.+....+....+++...+.++++..||.|+-+.             
T Consensus       211 KWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpd  290 (354)
T KOG0082|consen  211 KWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPD  290 (354)
T ss_pred             hHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchhhhCcC
Confidence            499999999999999999732          245666667888888888889999999999997210             


Q ss_pred             ----CCHHHHHHHhCC----CC-cCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         59 ----MSVAEVHRALGL----EN-LKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        59 ----~~~~~~~~~~~~----~~-~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                          ....+....+..    .. -....+.++.+.|.+..+|..+|..+.+.+.+
T Consensus       291 y~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~  345 (354)
T KOG0082|consen  291 YKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ  345 (354)
T ss_pred             CCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence                112222222111    00 01145667788999999999999988877653

>PRK13351 elongation factor G; Reviewed

Probab=98.43  E-value=2.9e-06  Score=59.43  Aligned_cols=50  Identities=14%  Similarity=0.006  Sum_probs=36.9

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      |..+++.+|++++|+|+++........ .+.. ...   .++|+++++||+|+..
T Consensus        90 ~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~-~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         90 VERSLRVLDGAVVVFDAVTGVQPQTET-VWRQ-ADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHH-HHh---cCCCEEEEEECCCCCC
Confidence            567899999999999998776554433 2222 222   4689999999999864

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.43  E-value=1.5e-06  Score=59.77  Aligned_cols=80  Identities=23%  Similarity=0.315  Sum_probs=58.2

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      +.|+++.|+|+++-++--..   ..++++    .+.|++++.|++|..++    .+.++..+.+        +++++.+|
T Consensus        81 ~~D~ivnVvDAtnLeRnLyl---tlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L--------GvPVv~tv  145 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYL---TLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLL--------GVPVVPTV  145 (653)
T ss_pred             CCCEEEEEcccchHHHHHHH---HHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHh--------CCCEEEEE
Confidence            57999999999874332221   222222    47899999999997543    3555666665        46999999


Q ss_pred             ccCCCChHHHHHHHHHHHh
Q psy12794         85 AKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~~  103 (106)
                      |++|+|++++...+.+...
T Consensus       146 A~~g~G~~~l~~~i~~~~~  164 (653)
T COG0370         146 AKRGEGLEELKRAIIELAE  164 (653)
T ss_pred             eecCCCHHHHHHHHHHhcc
Confidence            9999999999998876543

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.41  E-value=1.1e-06  Score=48.76  Aligned_cols=83  Identities=23%  Similarity=0.318  Sum_probs=57.9

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAK   86 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~   86 (106)
                      ..++|.+++|-.++++.+.-      -.-+..  ...+|+|-+.+|.|+.+........+++..    ...-++|.+|+.
T Consensus        62 ~~dadvi~~v~~and~~s~f------~p~f~~--~~~k~vIgvVTK~DLaed~dI~~~~~~L~e----aGa~~IF~~s~~  129 (148)
T COG4917          62 LQDADVIIYVHAANDPESRF------PPGFLD--IGVKKVIGVVTKADLAEDADISLVKRWLRE----AGAEPIFETSAV  129 (148)
T ss_pred             hhccceeeeeecccCccccC------Cccccc--ccccceEEEEecccccchHhHHHHHHHHHH----cCCcceEEEecc
Confidence            45788999999888775421      111111  245779999999999865444445555542    223489999999


Q ss_pred             CCCChHHHHHHHHHH
Q psy12794         87 EGEGLNDSMDWLSNA  101 (106)
Q Consensus        87 ~~~~v~~~~~~l~~~  101 (106)
                      +..|++++++.|...
T Consensus       130 d~~gv~~l~~~L~~~  144 (148)
T COG4917         130 DNQGVEELVDYLASL  144 (148)
T ss_pred             CcccHHHHHHHHHhh
Confidence            999999999998764

>cd04169 RF3 RF3 subfamily

Probab=98.40  E-value=1.3e-05  Score=50.29  Aligned_cols=50  Identities=16%  Similarity=0.249  Sum_probs=33.6

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC   58 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   58 (106)
                      ..+++.+|++++|+|+++..... ... +.+....   .++|+++++||+|+...
T Consensus        89 ~~~l~~aD~~IlVvda~~g~~~~-~~~-i~~~~~~---~~~P~iivvNK~D~~~a  138 (267)
T cd04169          89 YRTLTAVDSAVMVIDAAKGVEPQ-TRK-LFEVCRL---RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHCCEEEEEEECCCCccHH-HHH-HHHHHHh---cCCCEEEEEECCccCCC
Confidence            34678999999999998653221 112 2233332   46899999999997543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK12735 elongation factor Tu; Reviewed

Probab=98.36  E-value=5.3e-06  Score=54.70  Aligned_cols=91  Identities=20%  Similarity=0.242  Sum_probs=53.0

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEE-EEeeCCCCCCcCC-HH----HHHHHhCCCCcCCCceEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILV-ILANKQDMKNCMS-VA----EVHRALGLENLKDRTFQI   80 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~~~~~   80 (106)
                      ..++|++++|+|+........ .+.+ .....   .++|.+ ++.||+|+.+... ..    ++.+.+..........++
T Consensus        96 ~~~aD~~llVvda~~g~~~qt-~e~l-~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~i  170 (396)
T PRK12735         96 AAQMDGAILVVSAADGPMPQT-REHI-LLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPI  170 (396)
T ss_pred             hccCCEEEEEEECCCCCchhH-HHHH-HHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeE
Confidence            457899999999986432221 1222 22222   356755 6799999864211 11    233333221111224789


Q ss_pred             EEccccCCC----------ChHHHHHHHHHHH
Q psy12794         81 FKTSAKEGE----------GLNDSMDWLSNAL  102 (106)
Q Consensus        81 ~~~sa~~~~----------~v~~~~~~l~~~~  102 (106)
                      +.+||.+|.          ++.++++.|.+.+
T Consensus       171 i~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        171 IRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             EecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            999999984          5677777776654

>PRK12740 elongation factor G; Reviewed

Probab=98.35  E-value=9.2e-06  Score=56.79  Aligned_cols=50  Identities=14%  Similarity=0.006  Sum_probs=35.7

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      |..+++.+|++++|+|++......... .+.. ...   .+.|+++++||+|...
T Consensus        77 ~~~~l~~aD~vllvvd~~~~~~~~~~~-~~~~-~~~---~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         77 VERALRVLDGAVVVVCAVGGVEPQTET-VWRQ-AEK---YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHHHhCeEEEEEeCCCCcCHHHHH-HHHH-HHH---cCCCEEEEEECCCCCC
Confidence            556788999999999998765544332 2222 222   4689999999999764

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.32  E-value=5.3e-06  Score=55.47  Aligned_cols=83  Identities=18%  Similarity=0.201  Sum_probs=49.2

Q ss_pred             hhccCCeEEEEEECCCcchHH-------HHHHHHHHHhcCcCCCCC-eEEEEeeCCCCCCc-C---C----HHHHHHHhC
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIG-------ISKEELLAMLKEEELRDA-ILVILANKQDMKNC-M---S----VAEVHRALG   69 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~-~---~----~~~~~~~~~   69 (106)
                      .+..+|++++|+|+++. .++       ...+.+ .+...   .+. ++++++||+|+... .   .    ..++.+.+.
T Consensus       105 g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~-~~~~~---~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~  179 (447)
T PLN00043        105 GTSQADCAVLIIDSTTG-GFEAGISKDGQTREHA-LLAFT---LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLK  179 (447)
T ss_pred             hhhhccEEEEEEEcccC-ceecccCCCchHHHHH-HHHHH---cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHH
Confidence            46789999999999863 221       222222 22222   345 57889999997521 1   1    223333333


Q ss_pred             CCCcCCCceEEEEccccCCCChHH
Q psy12794         70 LENLKDRTFQIFKTSAKEGEGLND   93 (106)
Q Consensus        70 ~~~~~~~~~~~~~~sa~~~~~v~~   93 (106)
                      ........++++++||.+|.|+.+
T Consensus       180 ~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        180 KVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             HcCCCcccceEEEEeccccccccc
Confidence            222222357899999999999853

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.32  E-value=2.1e-05  Score=53.65  Aligned_cols=49  Identities=16%  Similarity=0.242  Sum_probs=33.6

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      ..+++.+|++++|+|+++..... ....+ +....   .+.|+++++||+|+..
T Consensus        97 ~~~l~~aD~aIlVvDa~~gv~~~-t~~l~-~~~~~---~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         97 YRTLTAVDSALMVIDAAKGVEPQ-TRKLM-EVCRL---RDTPIFTFINKLDRDG  145 (526)
T ss_pred             HHHHHHCCEEEEEEecCCCCCHH-HHHHH-HHHHh---cCCCEEEEEECCcccc
Confidence            35688999999999998653221 12222 22222   4789999999999764

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.31  E-value=1.8e-06  Score=56.75  Aligned_cols=101  Identities=17%  Similarity=0.295  Sum_probs=70.7

Q ss_pred             chhhhhccCCeEEEEEECCC----------cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-----c--------
Q psy12794          2 YWRCYYSNTDAIIYVVDSSD----------RDRIGISKEELLAMLKEEELRDAILVILANKQDMKN-----C--------   58 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-----~--------   58 (106)
                      -|.+++.++++++||+++++          ...+.+....+..+.......+.|++|++||.|+-.     .        
T Consensus       252 KW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp  331 (389)
T PF00503_consen  252 KWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFP  331 (389)
T ss_dssp             GGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTST
T ss_pred             hHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhhCC
Confidence            49999999999999999862          245777777888888888888999999999999511     1        


Q ss_pred             -------CCHHHHHHHhC----CCCcCC---CceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         59 -------MSVAEVHRALG----LENLKD---RTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        59 -------~~~~~~~~~~~----~~~~~~---~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                             .....+.+.+.    ......   ..+.++.++|.+..++..+|..+.+.+
T Consensus       332 ~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  332 DYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             TGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence                   12223322222    111111   566788999999999999998887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.30  E-value=4.6e-06  Score=53.74  Aligned_cols=88  Identities=19%  Similarity=0.147  Sum_probs=53.9

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCc--CCCceEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENL--KDRTFQI   80 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~--~~~~~~~   80 (106)
                      ...+|.++++.++.   +.+++.......+      ...-++|+||+|+.+...    ..++...+.....  ..+..++
T Consensus       167 ~~~aD~vlvv~~p~---~gd~iq~~k~gi~------E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pV  237 (332)
T PRK09435        167 AGMVDFFLLLQLPG---AGDELQGIKKGIM------ELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPV  237 (332)
T ss_pred             HHhCCEEEEEecCC---chHHHHHHHhhhh------hhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCE
Confidence            45689999997643   3333332121111      223489999999765322    2234444432111  1133589


Q ss_pred             EEccccCCCChHHHHHHHHHHHh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +.+||+++.|++++++.+.++..
T Consensus       238 i~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        238 LTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988754

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.29  E-value=9.5e-06  Score=53.46  Aligned_cols=77  Identities=23%  Similarity=0.278  Sum_probs=43.4

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeE-EEEeeCCCCCCcCC-H----HHHHHHhCCCCcCCCceEEE
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAIL-VILANKQDMKNCMS-V----AEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~-~----~~~~~~~~~~~~~~~~~~~~   81 (106)
                      .++|++++|+|++....... .+.+. ....   .+.|. ++++||+|+.+... .    .++.+.+.........++++
T Consensus        97 ~~~D~~ilVvda~~g~~~qt-~e~l~-~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii  171 (394)
T TIGR00485        97 AQMDGAILVVSATDGPMPQT-REHIL-LARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPII  171 (394)
T ss_pred             hhCCEEEEEEECCCCCcHHH-HHHHH-HHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEE
Confidence            45699999999986432221 12222 2222   24565 47899999864221 1    12333333222122237899


Q ss_pred             EccccCCC
Q psy12794         82 KTSAKEGE   89 (106)
Q Consensus        82 ~~sa~~~~   89 (106)
                      .+||.++.
T Consensus       172 ~vSa~~g~  179 (394)
T TIGR00485       172 RGSALKAL  179 (394)
T ss_pred             ECcccccc
Confidence            99999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.28  E-value=1.8e-05  Score=50.63  Aligned_cols=49  Identities=22%  Similarity=0.250  Sum_probs=37.2

Q ss_pred             CeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         44 AILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        44 ~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +|.+++.||+|+.+.   +++.....       ...++.+||+.+.|++++.+.+.+.+
T Consensus       240 ~p~l~v~NKiD~~~~---e~~~~l~~-------~~~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         240 KPALYVVNKIDLPGL---EELERLAR-------KPNSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             eeeEEEEecccccCH---HHHHHHHh-------ccceEEEecccCCCHHHHHHHHHHhh
Confidence            799999999998652   22333222       12688999999999999999998876

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.27  E-value=1.4e-05  Score=50.25  Aligned_cols=62  Identities=15%  Similarity=0.097  Sum_probs=40.0

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---CHHHHHHHhC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM---SVAEVHRALG   69 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~~~~~   69 (106)
                      |..+++.+|++++|+|+++...... ...+ +....   .++|++++.||+|+.+..   ...++.+.++
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~-~~~~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~  145 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVW-RQADR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLG  145 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHH-HHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence            5678899999999999976543222 1222 22222   468999999999986431   2344555554

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK00049 elongation factor Tu; Reviewed

Probab=98.26  E-value=1.2e-05  Score=53.11  Aligned_cols=90  Identities=20%  Similarity=0.224  Sum_probs=52.7

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEE-EEeeCCCCCCcCC-H----HHHHHHhCCCCcCCCceEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILV-ILANKQDMKNCMS-V----AEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~-~----~~~~~~~~~~~~~~~~~~~   80 (106)
                      ...+|++++|+|++....... .. +..+...   .+.|.+ ++.||+|+.+... .    .++.+.+..........++
T Consensus        96 ~~~aD~~llVVDa~~g~~~qt-~~-~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~i  170 (396)
T PRK00049         96 AAQMDGAILVVSAADGPMPQT-RE-HILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPI  170 (396)
T ss_pred             hccCCEEEEEEECCCCCchHH-HH-HHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcE
Confidence            467999999999976533221 12 2233333   357875 6899999864211 1    1333333321112235789


Q ss_pred             EEccccCCC----------ChHHHHHHHHHH
Q psy12794         81 FKTSAKEGE----------GLNDSMDWLSNA  101 (106)
Q Consensus        81 ~~~sa~~~~----------~v~~~~~~l~~~  101 (106)
                      +.+||.++.          |+..+++.|...
T Consensus       171 v~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        171 IRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             EEeecccccCCCCcccccccHHHHHHHHHhc
Confidence            999999875          455666666554

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.26  E-value=8.8e-06  Score=51.92  Aligned_cols=86  Identities=19%  Similarity=0.234  Sum_probs=57.2

Q ss_pred             CCeEEEEEECCCcc--hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794         10 TDAIIYVVDSSDRD--RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKE   87 (106)
Q Consensus        10 ~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~   87 (106)
                      .++++|++|++...  +.++....+.+....   .+.|+++|.||+|.......+++...+.    ...+.....+++..
T Consensus       248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~----~~~~~~~~~~~~~~  320 (346)
T COG1084         248 AGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVL----EEGGEEPLKISATK  320 (346)
T ss_pred             cCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHH----hhccccccceeeee
Confidence            46799999998654  344444445554333   3489999999999875444444444433    22233466788889


Q ss_pred             CCChHHHHHHHHHHH
Q psy12794         88 GEGLNDSMDWLSNAL  102 (106)
Q Consensus        88 ~~~v~~~~~~l~~~~  102 (106)
                      +.+++.+.+.+....
T Consensus       321 ~~~~d~~~~~v~~~a  335 (346)
T COG1084         321 GCGLDKLREEVRKTA  335 (346)
T ss_pred             hhhHHHHHHHHHHHh
Confidence            999998887777653

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.26  E-value=9.3e-06  Score=51.70  Aligned_cols=87  Identities=16%  Similarity=0.106  Sum_probs=51.1

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHH----hCCC--CcCCCceEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRA----LGLE--NLKDRTFQI   80 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~----~~~~--~~~~~~~~~   80 (106)
                      ...+|.++++.++.   +.+++......+      .++|.++++||+|+............    +...  .......++
T Consensus       145 ~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v  215 (300)
T TIGR00750       145 ANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPV  215 (300)
T ss_pred             HHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCE
Confidence            34567777775432   334433322222      35788999999998654322111111    1100  001123468


Q ss_pred             EEccccCCCChHHHHHHHHHHH
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +.+||++++|++++++++....
T Consensus       216 ~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       216 LTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             EEEEccCCCCHHHHHHHHHHHH
Confidence            9999999999999999998764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>CHL00071 tufA elongation factor Tu

Probab=98.25  E-value=7.4e-06  Score=54.22  Aligned_cols=79  Identities=23%  Similarity=0.219  Sum_probs=46.6

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCCH-----HHHHHHhCCCCcCCCceEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMSV-----AEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~   80 (106)
                      ...+|++++|+|++....... .+ ...+...   .++| ++++.||+|+.+....     .++.+.+..........++
T Consensus        96 ~~~~D~~ilVvda~~g~~~qt-~~-~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i  170 (409)
T CHL00071         96 AAQMDGAILVVSAADGPMPQT-KE-HILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPI  170 (409)
T ss_pred             HHhCCEEEEEEECCCCCcHHH-HH-HHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            467999999999976432221 12 2233332   3567 7789999998642211     1333333322112234789


Q ss_pred             EEccccCCCC
Q psy12794         81 FKTSAKEGEG   90 (106)
Q Consensus        81 ~~~sa~~~~~   90 (106)
                      +.+||.+|.+
T Consensus       171 i~~Sa~~g~n  180 (409)
T CHL00071        171 VSGSALLALE  180 (409)
T ss_pred             EEcchhhccc
Confidence            9999999864

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.24  E-value=1.6e-05  Score=50.37  Aligned_cols=87  Identities=29%  Similarity=0.355  Sum_probs=57.4

Q ss_pred             hhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH--HHHHHhCCCCcCCCceEEEE
Q psy12794          6 YYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA--EVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   82 (106)
                      -+.|.|-.++|+...+|+ +..-+++++.-    .+..+...+++.||+|+.+.....  +....+     ...+++++.
T Consensus        76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~----ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y-----~~~gy~v~~  146 (301)
T COG1162          76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVL----AEAGGIEPVIVLNKIDLLDDEEAAVKELLREY-----EDIGYPVLF  146 (301)
T ss_pred             cccccceEEEEEeccCCCCCHHHHHHHHHH----HHHcCCcEEEEEEccccCcchHHHHHHHHHHH-----HhCCeeEEE
Confidence            345677788888877664 33333333322    222567778889999997654333  233333     345789999


Q ss_pred             ccccCCCChHHHHHHHHHH
Q psy12794         83 TSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~  101 (106)
                      +|++++.|++++.+.+...
T Consensus       147 ~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         147 VSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             ecCcCcccHHHHHHHhcCC
Confidence            9999999999998887653

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.20  E-value=1.3e-05  Score=53.01  Aligned_cols=83  Identities=17%  Similarity=0.133  Sum_probs=47.1

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--HHHHHHHhCC--CCcCCCceEEEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS--VAEVHRALGL--ENLKDRTFQIFK   82 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~   82 (106)
                      ...+|++++|+|++.........  ...+....  ..++++++.||+|+.....  ..++.+.+..  ........+++.
T Consensus       101 ~~~aD~allVVda~~G~~~qt~~--~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iip  176 (406)
T TIGR02034       101 ASTADLAVLLVDARKGVLEQTRR--HSYIASLL--GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIP  176 (406)
T ss_pred             HhhCCEEEEEEECCCCCccccHH--HHHHHHHc--CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEE
Confidence            56899999999997543222111  11122221  2357899999999864211  1122222210  000112467999


Q ss_pred             ccccCCCChHH
Q psy12794         83 TSAKEGEGLND   93 (106)
Q Consensus        83 ~sa~~~~~v~~   93 (106)
                      +||.+|.|+.+
T Consensus       177 iSA~~g~ni~~  187 (406)
T TIGR02034       177 LSALKGDNVVS  187 (406)
T ss_pred             eecccCCCCcc
Confidence            99999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.18  E-value=3.3e-06  Score=40.53  Aligned_cols=43  Identities=21%  Similarity=0.348  Sum_probs=24.2

Q ss_pred             CCeEEEEEECCCcch--HHHHHHHHHHHhcCcCCCCCeEEEEeeCCC
Q psy12794         10 TDAIIYVVDSSDRDR--IGISKEELLAMLKEEELRDAILVILANKQD   54 (106)
Q Consensus        10 ~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   54 (106)
                      .++++|++|++....  .++....+.+....  ..++|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence            467999999996654  44443334443322  24799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.16  E-value=2e-05  Score=52.82  Aligned_cols=83  Identities=22%  Similarity=0.226  Sum_probs=48.2

Q ss_pred             hccCCeEEEEEECCCcch---H---HHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCC----cCC----HHHHHHHhCCC
Q psy12794          7 YSNTDAIIYVVDSSDRDR---I---GISKEELLAMLKEEELRDAI-LVILANKQDMKN----CMS----VAEVHRALGLE   71 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~----~~~----~~~~~~~~~~~   71 (106)
                      ...+|++++|+|++....   +   ....+.+ .+...   .++| ++++.||+|...    ...    ..++.+.+...
T Consensus       106 ~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~---~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~  181 (446)
T PTZ00141        106 TSQADVAILVVASTAGEFEAGISKDGQTREHA-LLAFT---LGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKV  181 (446)
T ss_pred             hhhcCEEEEEEEcCCCceecccCCCccHHHHH-HHHHH---cCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhc
Confidence            467999999999976420   0   1111112 22222   3444 679999999532    111    22334444322


Q ss_pred             CcCCCceEEEEccccCCCChHH
Q psy12794         72 NLKDRTFQIFKTSAKEGEGLND   93 (106)
Q Consensus        72 ~~~~~~~~~~~~sa~~~~~v~~   93 (106)
                      ......++++.+||.+|.|+.+
T Consensus       182 g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        182 GYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             CCCcccceEEEeecccCCCccc
Confidence            2233458999999999999863

>KOG1424|consensus

Probab=98.16  E-value=4.5e-06  Score=55.96  Aligned_cols=78  Identities=19%  Similarity=0.221  Sum_probs=53.9

Q ss_pred             chhhh---hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCce
Q psy12794          2 YWRCY---YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         2 ~~~~~---~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~   78 (106)
                      +|+..   +..+|++|.++|+.+|--|.--+  ++.+.+... ..+..++++||+||..........+++.     ..++
T Consensus       164 ~WRQLWRVlErSDivvqIVDARnPllfr~~d--Le~Yvke~d-~~K~~~LLvNKaDLl~~~qr~aWa~YF~-----~~ni  235 (562)
T KOG1424|consen  164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPD--LEDYVKEVD-PSKANVLLVNKADLLPPEQRVAWAEYFR-----QNNI  235 (562)
T ss_pred             HHHHHHHHHhhcceEEEEeecCCccccCChh--HHHHHhccc-cccceEEEEehhhcCCHHHHHHHHHHHH-----hcCc
Confidence            46665   56799999999999886554332  556655533 3478899999999976554555556664     3457


Q ss_pred             EEEEccccC
Q psy12794         79 QIFKTSAKE   87 (106)
Q Consensus        79 ~~~~~sa~~   87 (106)
                      +++..||..
T Consensus       236 ~~vf~SA~~  244 (562)
T KOG1424|consen  236 PVVFFSALA  244 (562)
T ss_pred             eEEEEeccc
Confidence            888888875

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.10  E-value=4.7e-06  Score=56.12  Aligned_cols=84  Identities=18%  Similarity=0.143  Sum_probs=47.7

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCC--CCcC-CCceEEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGL--ENLK-DRTFQIF   81 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~--~~~~-~~~~~~~   81 (106)
                      ...+|++++|+|++.........  ...+....  ..+|++++.||+|+.+..  ...++.+.+..  .... ....+++
T Consensus       128 l~~aD~allVVDa~~G~~~qt~~--~~~l~~~l--g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ii  203 (474)
T PRK05124        128 ASTCDLAILLIDARKGVLDQTRR--HSFIATLL--GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFV  203 (474)
T ss_pred             HhhCCEEEEEEECCCCccccchH--HHHHHHHh--CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence            47899999999997543211111  11111111  235889999999986321  12223222210  0001 1246899


Q ss_pred             EccccCCCChHHH
Q psy12794         82 KTSAKEGEGLNDS   94 (106)
Q Consensus        82 ~~sa~~~~~v~~~   94 (106)
                      .+||++|.|+.+.
T Consensus       204 pvSA~~g~ni~~~  216 (474)
T PRK05124        204 PLSALEGDNVVSQ  216 (474)
T ss_pred             EEEeecCCCcccc
Confidence            9999999998764

>KOG1144|consensus

Probab=98.09  E-value=1.7e-05  Score=55.65  Aligned_cols=93  Identities=27%  Similarity=0.236  Sum_probs=56.4

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc------CC------------HHHHH---
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC------MS------------VAEVH---   65 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------~~------------~~~~~---   65 (106)
                      -..||.+|+|+|+...-....+.  -.++++.   .+.|+||+.||+|..-.      ..            ..++.   
T Consensus       561 sslC~~aIlvvdImhGlepqtiE--Si~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~  635 (1064)
T KOG1144|consen  561 SSLCDLAILVVDIMHGLEPQTIE--SINLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERL  635 (1064)
T ss_pred             ccccceEEEEeehhccCCcchhH--HHHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHH
Confidence            45699999999997432222111  1233333   57899999999995210      00            00111   


Q ss_pred             ----HHhCCCCc----------CCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         66 ----RALGLENL----------KDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        66 ----~~~~~~~~----------~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                          ..|....+          ....+.++.+||.+|+|+.+++.+|++..+.
T Consensus       636 ~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk  688 (1064)
T KOG1144|consen  636 NNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK  688 (1064)
T ss_pred             HHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence                11111111          1123678999999999999999999887654

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=1.9e-05  Score=50.55  Aligned_cols=88  Identities=14%  Similarity=0.185  Sum_probs=57.2

Q ss_pred             CeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794         11 DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDRTFQIFKTSAK   86 (106)
Q Consensus        11 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~sa~   86 (106)
                      |++++|++.+.+..=-+..+.+   +.-.-..-+.++++-||+|+.+.    ...+++.++..-.  -..+.+++.+||.
T Consensus       111 DgAlLvIaANEpcPQPQT~EHl---~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt--~Ae~aPIIPiSA~  185 (415)
T COG5257         111 DGALLVIAANEPCPQPQTREHL---MALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKGT--VAENAPIIPISAQ  185 (415)
T ss_pred             cceEEEEecCCCCCCCchHHHH---HHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhccc--ccCCCceeeehhh
Confidence            7899999988653211111111   11111134799999999998753    2334555554321  1235689999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q psy12794         87 EGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        87 ~~~~v~~~~~~l~~~~~  103 (106)
                      .+.|++.+++.+.+.+.
T Consensus       186 ~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         186 HKANIDALIEAIEKYIP  202 (415)
T ss_pred             hccCHHHHHHHHHHhCC
Confidence            99999999999998875

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.08  E-value=2e-05  Score=46.40  Aligned_cols=43  Identities=23%  Similarity=0.224  Sum_probs=28.5

Q ss_pred             CeEEEEEECCCcchHHHHHHHHHHH--hcCcCCCCCeEEEEeeCCCCCCc
Q psy12794         11 DAIIYVVDSSDRDRIGISKEELLAM--LKEEELRDAILVILANKQDMKNC   58 (106)
Q Consensus        11 d~~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~p~ilv~nK~D~~~~   58 (106)
                      |++++|+|+..+.+...  ..+.+.  +..   .++|+++|.||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~---~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVLQAG---GNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHHhcc---CCCCEEEEEehhhcCCH
Confidence            78999999987533221  123333  222   46899999999998643

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK12739 elongation factor G; Reviewed

Probab=98.08  E-value=5.2e-05  Score=53.37  Aligned_cols=50  Identities=12%  Similarity=0.032  Sum_probs=34.8

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      |..+++.+|++++|+|+++.....+.  .+......   .++|.+++.||+|+..
T Consensus        90 ~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         90 VERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            45678899999999999875433222  22233332   4689999999999864

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.07  E-value=4.1e-05  Score=53.86  Aligned_cols=51  Identities=12%  Similarity=0.033  Sum_probs=36.2

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC   58 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   58 (106)
                      +..+++.+|++++|+|+++........ .+ .....   .++|+++++||+|+...
T Consensus        92 ~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~~---~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        92 VERSLRVLDGAVAVLDAVGGVQPQSET-VW-RQANR---YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             HHHHHHHhCEEEEEEeCCCCCChhHHH-HH-HHHHH---cCCCEEEEEECCCCCCC
Confidence            566789999999999998754443322 22 22332   46899999999998753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.06  E-value=1.5e-05  Score=47.71  Aligned_cols=91  Identities=15%  Similarity=0.126  Sum_probs=54.6

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-C--------CHHHHHHHhCCC---Cc-
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-M--------SVAEVHRALGLE---NL-   73 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~--------~~~~~~~~~~~~---~~-   73 (106)
                      +.++|.++++.+.    ++...+..+.+.+..   .++|+++|+||+|+... .        ...++.+.+...   .+ 
T Consensus        78 ~~~~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  150 (197)
T cd04104          78 FSEYDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQ  150 (197)
T ss_pred             ccCcCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHH
Confidence            5678988888542    234444344444444   36899999999997321 0        112222211100   00 


Q ss_pred             --CCCceEEEEcccc--CCCChHHHHHHHHHHHhh
Q psy12794         74 --KDRTFQIFKTSAK--EGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        74 --~~~~~~~~~~sa~--~~~~v~~~~~~l~~~~~~  104 (106)
                        .....+++.+|+.  .+.|+..+.+.+...+.+
T Consensus       151 ~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         151 EAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             HcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence              1123478899998  678999999999887764

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.05  E-value=1.9e-05  Score=54.96  Aligned_cols=83  Identities=17%  Similarity=0.113  Sum_probs=46.8

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCC--CCcCCCceEEEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGL--ENLKDRTFQIFK   82 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~   82 (106)
                      ...+|++++|+|++.........  ...+....  ..++++++.||+|+.+.  ....++...+..  ........+++.
T Consensus       125 ~~~aD~~llVvda~~g~~~~t~e--~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iip  200 (632)
T PRK05506        125 ASTADLAIILVDARKGVLTQTRR--HSFIASLL--GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIP  200 (632)
T ss_pred             HHhCCEEEEEEECCCCccccCHH--HHHHHHHh--CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEE
Confidence            46799999999997543221111  11112211  23688999999998631  111222222210  000112457899


Q ss_pred             ccccCCCChHH
Q psy12794         83 TSAKEGEGLND   93 (106)
Q Consensus        83 ~sa~~~~~v~~   93 (106)
                      +||++|.|+.+
T Consensus       201 iSA~~g~ni~~  211 (632)
T PRK05506        201 ISALKGDNVVT  211 (632)
T ss_pred             EecccCCCccc
Confidence            99999999874

>TIGR00503 prfC peptide chain release factor 3

Probab=98.03  E-value=8.9e-05  Score=50.69  Aligned_cols=48  Identities=19%  Similarity=0.260  Sum_probs=32.5

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      .+++.+|++++|+|+++..  ......+.+....   .+.|+++++||+|+..
T Consensus        99 ~~l~~aD~aIlVvDa~~gv--~~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        99 RTLTAVDNCLMVIDAAKGV--ETRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             HHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            3578899999999997642  2222222233332   4689999999999753

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PLN03127 Elongation factor Tu; Provisional

Probab=98.03  E-value=5.7e-05  Score=50.68  Aligned_cols=90  Identities=22%  Similarity=0.287  Sum_probs=50.5

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCC-HH----HHHHHhCCCCcCCCceEEE
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMS-VA----EVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~~~~~~   81 (106)
                      ..+|++++|+|++....... . .....+..   .++| ++++.||+|+.+... .+    ++.+.+..........+++
T Consensus       146 ~~aD~allVVda~~g~~~qt-~-e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpii  220 (447)
T PLN03127        146 AQMDGGILVVSAPDGPMPQT-K-EHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPII  220 (447)
T ss_pred             hhCCEEEEEEECCCCCchhH-H-HHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEE
Confidence            46899999999976432221 2 22233333   3577 578899999864211 11    2222222111112346788


Q ss_pred             Ecccc---CCCC-------hHHHHHHHHHHH
Q psy12794         82 KTSAK---EGEG-------LNDSMDWLSNAL  102 (106)
Q Consensus        82 ~~sa~---~~~~-------v~~~~~~l~~~~  102 (106)
                      .+||.   +|.|       +..+++.+.+.+
T Consensus       221 p~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        221 RGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             EeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            88776   4555       567777776654

>KOG1532|consensus

Probab=98.03  E-value=3.3e-05  Score=48.58  Aligned_cols=90  Identities=18%  Similarity=0.265  Sum_probs=55.6

Q ss_pred             CeEEEEEECC---CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-------HHHHHHHhCC--C-------
Q psy12794         11 DAIIYVVDSS---DRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-------VAEVHRALGL--E-------   71 (106)
Q Consensus        11 d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-------~~~~~~~~~~--~-------   71 (106)
                      .++++++|..   ++.+|-..-.+-..++-.   .+.|.++++||+|+.+..-       .+.+.+.+..  .       
T Consensus       149 tvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~  225 (366)
T KOG1532|consen  149 TVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLT  225 (366)
T ss_pred             eEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhh
Confidence            4678888874   334444333233333333   5789999999999876421       1122222221  0       


Q ss_pred             -------CcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         72 -------NLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        72 -------~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                             .....++..+.+|+.+|.|.+++|..+-..+.
T Consensus       226 ~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd  264 (366)
T KOG1532|consen  226 RSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD  264 (366)
T ss_pred             hhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence                   00124578999999999999999998876554

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.00  E-value=2.4e-05  Score=47.86  Aligned_cols=48  Identities=23%  Similarity=0.179  Sum_probs=34.0

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK   56 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   56 (106)
                      ..+++.+|++++|+|+++....... ..+.....    .++|+++++||+|+.
T Consensus        91 ~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          91 TAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             HHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCcc
Confidence            4578999999999999876554432 22222222    357999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG1490|consensus

Probab=98.00  E-value=6.2e-06  Score=55.36  Aligned_cols=86  Identities=19%  Similarity=0.263  Sum_probs=55.5

Q ss_pred             eEEEEEECCCcch--HHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH----HHHHHhCCCCcCCCceEEEEccc
Q psy12794         12 AIIYVVDSSDRDR--IGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA----EVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus        12 ~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      +++|+.|.+....  ..+....+..+  .+...++|.|+|+||+|+.......    ++.+.+.    ...+.+++++|.
T Consensus       250 aVLYfmDLSe~CGySva~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~----~~~~v~v~~tS~  323 (620)
T KOG1490|consen  250 AVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTII----DDGNVKVVQTSC  323 (620)
T ss_pred             hheeeeechhhhCCCHHHHHHHHHHh--HHHhcCCceEEEeecccccCccccCHHHHHHHHHHH----hccCceEEEecc
Confidence            4788899986543  33332222221  2223579999999999976543322    2333332    334579999999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q psy12794         86 KEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~~  103 (106)
                      .+.+|+.++....++.+.
T Consensus       324 ~~eegVm~Vrt~ACe~LL  341 (620)
T KOG1490|consen  324 VQEEGVMDVRTTACEALL  341 (620)
T ss_pred             cchhceeeHHHHHHHHHH
Confidence            999999998887776553

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.95  E-value=3.1e-05  Score=47.87  Aligned_cols=88  Identities=19%  Similarity=0.149  Sum_probs=44.5

Q ss_pred             CCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcC------------------------CHHHH
Q psy12794         10 TDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCM------------------------SVAEV   64 (106)
Q Consensus        10 ~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------------------~~~~~   64 (106)
                      .-++++++|.....+..... ..+..... ....+.|.+.|.||+|+.+..                        ...++
T Consensus       123 ~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i  201 (238)
T PF03029_consen  123 RLVVVFLVDSSFCSDPSKFVSSLLLSLSI-MLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEI  201 (238)
T ss_dssp             --EEEEEE-GGG-SSHHHHHHHHHHHHHH-HHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHH
T ss_pred             ceEEEEEEecccccChhhHHHHHHHHHHH-HhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            44789999987433322211 11111111 001368999999999987521                        00112


Q ss_pred             HHHhCCCCcCCCce-EEEEccccCCCChHHHHHHHHHHH
Q psy12794         65 HRALGLENLKDRTF-QIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      .+.+.    ..... .++.+|+++++|+++++..+-+.+
T Consensus       202 ~~~l~----~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  202 AELLD----DFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHCC----CCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             HHHHh----hcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            22222    22233 899999999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.94  E-value=0.00011  Score=48.59  Aligned_cols=89  Identities=22%  Similarity=0.214  Sum_probs=55.8

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCC
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEG   88 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~   88 (106)
                      ..|.+++|+|+++.-......  ....+..  +..+..++|.||+|..+....++..+.+.... .....+++.+|+++|
T Consensus        73 ~~d~alLvV~~deGl~~qtgE--hL~iLdl--lgi~~giivltk~D~~d~~r~e~~i~~Il~~l-~l~~~~i~~~s~~~g  147 (447)
T COG3276          73 GIDYALLVVAADEGLMAQTGE--HLLILDL--LGIKNGIIVLTKADRVDEARIEQKIKQILADL-SLANAKIFKTSAKTG  147 (447)
T ss_pred             CCceEEEEEeCccCcchhhHH--HHHHHHh--cCCCceEEEEeccccccHHHHHHHHHHHHhhc-ccccccccccccccC
Confidence            578999999996543322221  1122222  13456699999999865432222222221111 133557899999999


Q ss_pred             CChHHHHHHHHHHH
Q psy12794         89 EGLNDSMDWLSNAL  102 (106)
Q Consensus        89 ~~v~~~~~~l~~~~  102 (106)
                      +|++++.+.|.+..
T Consensus       148 ~GI~~Lk~~l~~L~  161 (447)
T COG3276         148 RGIEELKNELIDLL  161 (447)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999998876

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.90  E-value=1.9e-05  Score=49.98  Aligned_cols=57  Identities=25%  Similarity=0.385  Sum_probs=40.8

Q ss_pred             CCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794         42 RDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        42 ~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      ...+-+++.||+|+.+..  ....+.+.+..   .....+++.+||++|+|++++.+||..+
T Consensus       229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        229 FAAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hhcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            346779999999986532  23334444331   1235689999999999999999999874

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.89  E-value=5.6e-05  Score=49.69  Aligned_cols=84  Identities=20%  Similarity=0.315  Sum_probs=48.2

Q ss_pred             ccCCeEEEEEECCCcc---h--HHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhC----CCCcCCC
Q psy12794          8 SNTDAIIYVVDSSDRD---R--IGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALG----LENLKDR   76 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~----~~~~~~~   76 (106)
                      .++|+.|+|+|+....   .  .....++..-+...  +.-..++++.||+|+.+-  ...+++.....    .......
T Consensus       107 sqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t--lGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~  184 (428)
T COG5256         107 SQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART--LGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPK  184 (428)
T ss_pred             hhccEEEEEEECCCCccccccccCCchhHHHHHHHh--cCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            4689999999998652   1  11111111111122  234789999999998751  11122222211    1111233


Q ss_pred             ceEEEEccccCCCChHH
Q psy12794         77 TFQIFKTSAKEGEGLND   93 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~   93 (106)
                      +.+|+.+||..|.|+.+
T Consensus       185 ~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         185 DVPFIPISGFKGDNLTK  201 (428)
T ss_pred             CCeEEecccccCCcccc
Confidence            67899999999999854

>cd04167 Snu114p Snu114p subfamily

Probab=97.87  E-value=6e-05  Score=45.64  Aligned_cols=49  Identities=16%  Similarity=0.153  Sum_probs=34.4

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK   56 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   56 (106)
                      +..++..+|++++|+|+++..+... ..++.....    .+.|+++++||+|+.
T Consensus        88 ~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          88 VAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             HHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            4567889999999999987665532 222222222    358999999999964

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK00007 elongation factor G; Reviewed

Probab=97.86  E-value=0.00025  Score=50.08  Aligned_cols=47  Identities=13%  Similarity=0.055  Sum_probs=32.0

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      .++.+|++++|+|+..........  +......   .++|.+++.||+|+.+
T Consensus        95 al~~~D~~vlVvda~~g~~~qt~~--~~~~~~~---~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         95 SLRVLDGAVAVFDAVGGVEPQSET--VWRQADK---YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             HHHHcCEEEEEEECCCCcchhhHH--HHHHHHH---cCCCEEEEEECCCCCC
Confidence            467889999999987654333222  2233333   4689999999999864

>PLN03126 Elongation factor Tu; Provisional

Probab=97.82  E-value=0.00012  Score=49.56  Aligned_cols=78  Identities=24%  Similarity=0.240  Sum_probs=45.7

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCC-HH----HHHHHhCCCCcCCCceEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMS-VA----EVHRALGLENLKDRTFQI   80 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~~~~~   80 (106)
                      ...+|++++|+|+.+...... .+.+ .....   .++| ++++.||+|+.+... .+    ++.+.+....+.....++
T Consensus       165 ~~~aD~ailVVda~~G~~~qt-~e~~-~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~  239 (478)
T PLN03126        165 AAQMDGAILVVSGADGPMPQT-KEHI-LLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPI  239 (478)
T ss_pred             HhhCCEEEEEEECCCCCcHHH-HHHH-HHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceE
Confidence            456899999999986533222 2222 22222   3566 778999999864211 11    233333322122246789


Q ss_pred             EEccccCCC
Q psy12794         81 FKTSAKEGE   89 (106)
Q Consensus        81 ~~~sa~~~~   89 (106)
                      +.+||.++.
T Consensus       240 vp~Sa~~g~  248 (478)
T PLN03126        240 ISGSALLAL  248 (478)
T ss_pred             EEEEccccc
Confidence            999998874

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=97.77  E-value=0.00019  Score=44.96  Aligned_cols=51  Identities=24%  Similarity=0.244  Sum_probs=35.6

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC   58 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   58 (106)
                      +..+++.+|++++|+|+++........ .+. ....   .+.|.++++||+|....
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~-~~~~---~~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEK-LWE-FADE---AGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHH-HHHH---cCCCEEEEEECCccCCC
Confidence            456788999999999998765443222 222 2222   46899999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.77  E-value=3e-05  Score=46.27  Aligned_cols=79  Identities=18%  Similarity=0.247  Sum_probs=51.6

Q ss_pred             CeEEEEEECCCcchHHHHHHHHHHHhc-CcCCCCCeEEEEeeCCCCCCcCC--HHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794         11 DAIIYVVDSSDRDRIGISKEELLAMLK-EEELRDAILVILANKQDMKNCMS--VAEVHRALGLENLKDRTFQIFKTSAKE   87 (106)
Q Consensus        11 d~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~sa~~   87 (106)
                      +.-|+|+|++..+.   .      -.+ .+.+.. .=++|.||.|+.....  .+...+....   -....+++++|+++
T Consensus       119 ~~~v~VidvteGe~---~------P~K~gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~---~np~~~ii~~n~kt  185 (202)
T COG0378         119 HLRVVVIDVTEGED---I------PRKGGPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKE---VNPEAPIIFTNLKT  185 (202)
T ss_pred             ceEEEEEECCCCCC---C------cccCCCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHH---hCCCCCEEEEeCCC
Confidence            47788999876432   0      011 222233 5588999999976432  2434333321   12456999999999


Q ss_pred             CCChHHHHHHHHHHH
Q psy12794         88 GEGLNDSMDWLSNAL  102 (106)
Q Consensus        88 ~~~v~~~~~~l~~~~  102 (106)
                      |+|++++.+|+....
T Consensus       186 g~G~~~~~~~i~~~~  200 (202)
T COG0378         186 GEGLDEWLRFIEPQA  200 (202)
T ss_pred             CcCHHHHHHHHHhhc
Confidence            999999999987654

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.74  E-value=0.00018  Score=39.38  Aligned_cols=75  Identities=19%  Similarity=0.206  Sum_probs=49.7

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      ..++++++.++.+++.+++.+++..  |...+... ...+.|.++++||.|+....   ++.+.        ....++++
T Consensus        41 ~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~--------~~~~~~~~  106 (124)
T smart00010       41 PTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATE--------EGLEFAET  106 (124)
T ss_pred             ccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHH--------HHHHHHHH
Confidence            4578899999999999988887654  34333332 22568899999999974321   11111        11245678


Q ss_pred             cccCCCChH
Q psy12794         84 SAKEGEGLN   92 (106)
Q Consensus        84 sa~~~~~v~   92 (106)
                      |++++.|+.
T Consensus       107 s~~~~~~~~  115 (124)
T smart00010      107 SAKTPEEGE  115 (124)
T ss_pred             hCCCcchhh
Confidence            999999875

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.61  E-value=0.00017  Score=46.45  Aligned_cols=80  Identities=19%  Similarity=0.171  Sum_probs=52.2

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      .....+|.++-|+|+.+|.+...-  .+.++..     ++|.++|+||+|+.+.....+..+.+..    ..+...+.++
T Consensus        30 ~~~~~~d~vvevvDar~P~~s~~~--~l~~~v~-----~k~~i~vlNK~DL~~~~~~~~W~~~~~~----~~~~~~~~v~   98 (322)
T COG1161          30 EVLKSVDVVVEVVDARDPLGTRNP--ELERIVK-----EKPKLLVLNKADLAPKEVTKKWKKYFKK----EEGIKPIFVS   98 (322)
T ss_pred             HhcccCCEEEEEEeccccccccCc--cHHHHHc-----cCCcEEEEehhhcCCHHHHHHHHHHHHh----cCCCccEEEE
Confidence            356788999999999887553322  2444443     4666999999999765444455555542    2244566777


Q ss_pred             ccCCCChHHHH
Q psy12794         85 AKEGEGLNDSM   95 (106)
Q Consensus        85 a~~~~~v~~~~   95 (106)
                      +..+.+...+.
T Consensus        99 ~~~~~~~~~i~  109 (322)
T COG1161          99 AKSRQGGKKIR  109 (322)
T ss_pred             eecccCccchH
Confidence            77777766555

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.60  E-value=0.00027  Score=47.52  Aligned_cols=93  Identities=18%  Similarity=0.192  Sum_probs=59.1

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH---HHHHHHhCCCCc--CCCceEE
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV---AEVHRALGLENL--KDRTFQI   80 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~--~~~~~~~   80 (106)
                      .+.-+|++++++|+...+-+. ....+.+.+.    .+.+.|+|.||+|.+.+...   +++.+.+.....  ....+++
T Consensus        88 vl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPi  162 (603)
T COG1217          88 VLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPI  162 (603)
T ss_pred             hhhhcceEEEEEEcccCCCCc-hhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcE
Confidence            456789999999998654322 2222334443    35566888999998875432   233333322211  2246789


Q ss_pred             EEccccCCC----------ChHHHHHHHHHHHh
Q psy12794         81 FKTSAKEGE----------GLNDSMDWLSNALQ  103 (106)
Q Consensus        81 ~~~sa~~~~----------~v~~~~~~l~~~~~  103 (106)
                      +..||..|.          +...+|+.+.+++.
T Consensus       163 vYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp  195 (603)
T COG1217         163 VYASARNGTASLDPEDEADDMAPLFETILDHVP  195 (603)
T ss_pred             EEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence            999998763          57788998888775

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.60  E-value=7.1e-05  Score=46.62  Aligned_cols=86  Identities=22%  Similarity=0.283  Sum_probs=50.3

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCC--cCCCceEEEEcc
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLEN--LKDRTFQIFKTS   84 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~s   84 (106)
                      .-+|.+++|.-+...+....+..=+.+         .+=++|.||.|.+... ...++...+....  ...+..+++.+|
T Consensus       141 ~~aD~~v~v~~Pg~GD~iQ~~KaGimE---------iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~ts  211 (266)
T PF03308_consen  141 DMADTVVLVLVPGLGDEIQAIKAGIME---------IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTS  211 (266)
T ss_dssp             TTSSEEEEEEESSTCCCCCTB-TTHHH---------H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEB
T ss_pred             HhcCeEEEEecCCCccHHHHHhhhhhh---------hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEE
Confidence            457888888887655443222211222         2448999999965432 2233444333211  133457999999


Q ss_pred             ccCCCChHHHHHHHHHHH
Q psy12794         85 AKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~  102 (106)
                      |.+++|++++.+.+.++-
T Consensus       212 A~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  212 ALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHHH
Confidence            999999999999888754

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG1707|consensus

Probab=97.59  E-value=0.00086  Score=46.05  Aligned_cols=85  Identities=22%  Similarity=0.207  Sum_probs=56.9

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-----CCHHHHHHHhCCCCcCCCceEEEE
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-----MSVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      ..||++.++||.+++.+|..+..........   ...|++.|++|+|+.+.     ....++...++..       +.+.
T Consensus       494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~  563 (625)
T KOG1707|consen  494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIH  563 (625)
T ss_pred             ceeeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCee
Confidence            4589999999999999998877655444333   67899999999998653     2334555555432       2233


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +|.+.... .++|..|+.+..
T Consensus       564 ~S~~~~~s-~~lf~kL~~~A~  583 (625)
T KOG1707|consen  564 ISSKTLSS-NELFIKLATMAQ  583 (625)
T ss_pred             eccCCCCC-chHHHHHHHhhh
Confidence            44443223 788888887653

>cd01882 BMS1 Bms1

Probab=97.58  E-value=0.00021  Score=43.80  Aligned_cols=77  Identities=13%  Similarity=0.066  Sum_probs=43.7

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeE-EEEeeCCCCCCcC-CHHHHH----HHhCCCCcCCCceEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAIL-VILANKQDMKNCM-SVAEVH----RALGLENLKDRTFQI   80 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~-~~~~~~----~~~~~~~~~~~~~~~   80 (106)
                      .+.+|.+++|+|.+......+.  .+...+..   .+.|. +++.||+|+.... ...++.    +.+....  ....++
T Consensus       101 ak~aDvVllviDa~~~~~~~~~--~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~--~~~~ki  173 (225)
T cd01882         101 AKVADLVLLLIDASFGFEMETF--EFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEV--YQGAKL  173 (225)
T ss_pred             HHhcCEEEEEEecCcCCCHHHH--HHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhh--CCCCcE
Confidence            4679999999999764433221  23333333   34664 5599999985321 122222    2222111  124589


Q ss_pred             EEccccCCCC
Q psy12794         81 FKTSAKEGEG   90 (106)
Q Consensus        81 ~~~sa~~~~~   90 (106)
                      +.+||++...
T Consensus       174 ~~iSa~~~~~  183 (225)
T cd01882         174 FYLSGIVHGR  183 (225)
T ss_pred             EEEeeccCCC
Confidence            9999998744

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=97.55  E-value=0.00032  Score=45.66  Aligned_cols=77  Identities=17%  Similarity=0.154  Sum_probs=45.9

Q ss_pred             cCCeEEEEEECCCcchHHHHHH---HHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCC--CcCCCceEEE
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKE---ELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLE--NLKDRTFQIF   81 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~   81 (106)
                      .||+.|+++|+..  ...+..+   ++..++     .-+.++++.||+|+.+-  ....++...+...  .+......++
T Consensus       109 TadlAIlLVDAR~--Gvl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~I  181 (431)
T COG2895         109 TADLAILLVDARK--GVLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFI  181 (431)
T ss_pred             cccEEEEEEecch--hhHHHhHHHHHHHHHh-----CCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence            4899999999943  2222221   122222     34799999999999752  2223333332211  1122345899


Q ss_pred             EccccCCCChH
Q psy12794         82 KTSAKEGEGLN   92 (106)
Q Consensus        82 ~~sa~~~~~v~   92 (106)
                      ++||..|.|+-
T Consensus       182 PiSAl~GDNV~  192 (431)
T COG2895         182 PISALLGDNVV  192 (431)
T ss_pred             echhccCCccc
Confidence            99999999874

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=97.46  E-value=0.00039  Score=42.89  Aligned_cols=96  Identities=20%  Similarity=0.218  Sum_probs=54.4

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC--cCCCCCeEEEEeeCCCCCCcCCHHH--------HHHHhCCCCc
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANKQDMKNCMSVAE--------VHRALGLENL   73 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~~~~~~~~~--------~~~~~~~~~~   73 (106)
                      ...+++++++|||+|+.+.+-.+++. .+...+..  ....+..+.+..+|+|+.......+        +.+...  ..
T Consensus        71 ~~if~~v~~LIyV~D~qs~~~~~~l~-~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~--~~  147 (232)
T PF04670_consen   71 EEIFSNVGVLIYVFDAQSDDYDEDLA-YLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE--DL  147 (232)
T ss_dssp             HHHHCTESEEEEEEETT-STCHHHHH-HHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH--HT
T ss_pred             HHHHhccCEEEEEEEcccccHHHHHH-HHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh--hc
Confidence            45789999999999998554333333 23332221  1125789999999999754321111        122221  00


Q ss_pred             CCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         74 KDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ....+.++.+|.-+ ..+.+.+..++..+.
T Consensus       148 ~~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li  176 (232)
T PF04670_consen  148 GIEDITFFLTSIWD-ESLYEAWSKIVQKLI  176 (232)
T ss_dssp             T-TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred             cccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence            11247899988876 588888888877654

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG1191|consensus

Probab=97.37  E-value=0.0008  Score=45.39  Aligned_cols=98  Identities=17%  Similarity=0.131  Sum_probs=54.7

Q ss_pred             hhccCCeEEEEEEC--CCcchHHHHHHHHHHHhcCc-----CCCCCeEEEEeeCCCCCCcCCHH-HHHHHhCCCCcCCCc
Q psy12794          6 YYSNTDAIIYVVDS--SDRDRIGISKEELLAMLKEE-----ELRDAILVILANKQDMKNCMSVA-EVHRALGLENLKDRT   77 (106)
Q Consensus         6 ~~~~~d~~i~v~d~--~~~~~~~~~~~~~~~~~~~~-----~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~   77 (106)
                      ..+.+|++++|+|+  +...+...+.+.+...-...     .....|++++.||.|+....... .....+......+..
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~  424 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF  424 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence            35789999999999  33333333232232221111     11247999999999986542111 100011100111122


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      -...++|+++++|...+.+.+...+.
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~  450 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVE  450 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHH
Confidence            34556999999999999888776553

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.36  E-value=0.0028  Score=40.53  Aligned_cols=87  Identities=24%  Similarity=0.299  Sum_probs=51.9

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCC----CcCCCceEEEE
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLE----NLKDRTFQIFK   82 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~   82 (106)
                      .-+|.+++|.-+.-.+...-+.   .-++      +..=++|.||.|..+.. ...++...+...    .-..+..+++.
T Consensus       163 ~~aDt~~~v~~pg~GD~~Q~iK---~Gim------EiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~  233 (323)
T COG1703         163 NMADTFLVVMIPGAGDDLQGIK---AGIM------EIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVT  233 (323)
T ss_pred             hhcceEEEEecCCCCcHHHHHH---hhhh------hhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeE
Confidence            3467777776554333333222   1221      23338899999965431 122233333222    11345678999


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||.+|+|++++++.+.++..
T Consensus       234 t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         234 TSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             eeeccCCCHHHHHHHHHHHHH
Confidence            999999999999999987654

>cd01899 Ygr210 Ygr210 subfamily

Probab=97.35  E-value=0.00048  Score=44.41  Aligned_cols=56  Identities=27%  Similarity=0.190  Sum_probs=39.4

Q ss_pred             CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHH-HHHHHHh
Q psy12794         42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMD-WLSNALQ  103 (106)
Q Consensus        42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~-~l~~~~~  103 (106)
                      ..+|+++++||.|+.+.   .+..+.+..   .....+++.+||+.+.|+.++.+ .+.+.+.
T Consensus       213 t~KPvI~VlNK~Dl~~~---~~~~~~l~~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP  269 (318)
T cd01899         213 RSKPMVIAANKADIPDA---ENNISKLRL---KYPDEIVVPTSAEAELALRRAAKQGLIKYDP  269 (318)
T ss_pred             cCCcEEEEEEHHHccCh---HHHHHHHHh---hCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence            46899999999997532   222222221   12245799999999999999997 5887764

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG2423|consensus

Probab=97.29  E-value=0.0041  Score=41.42  Aligned_cols=90  Identities=24%  Similarity=0.319  Sum_probs=51.7

Q ss_pred             chhhhhc---cCCeEEEEEECCCcc--hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCC
Q psy12794          2 YWRCYYS---NTDAIIYVVDSSDRD--RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDR   76 (106)
Q Consensus         2 ~~~~~~~---~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~   76 (106)
                      +|...|+   .+|++|.|+|+.+|-  ....    ++++++.. ...+.++.|.||+||...-........+.    +..
T Consensus       203 IW~ELyKViDSSDVvvqVlDARDPmGTrc~~----ve~ylkke-~phKHli~vLNKvDLVPtwvt~~Wv~~lS----key  273 (572)
T KOG2423|consen  203 IWGELYKVIDSSDVVVQVLDARDPMGTRCKH----VEEYLKKE-KPHKHLIYVLNKVDLVPTWVTAKWVRHLS----KEY  273 (572)
T ss_pred             HHHHHHHhhcccceeEEeeeccCCcccccHH----HHHHHhhc-CCcceeEEEeeccccccHHHHHHHHHHHh----hhC
Confidence            5666654   678999999998763  2333    44555432 25689999999999865422222333332    111


Q ss_pred             ceEEEEccccCCCChHHHHHHHHH
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~  100 (106)
                      .---|..|.....|-..+...|.+
T Consensus       274 PTiAfHAsi~nsfGKgalI~llRQ  297 (572)
T KOG2423|consen  274 PTIAFHASINNSFGKGALIQLLRQ  297 (572)
T ss_pred             cceeeehhhcCccchhHHHHHHHH
Confidence            222344566666665555554443

>KOG0458|consensus

Probab=97.25  E-value=0.00083  Score=46.07  Aligned_cols=83  Identities=22%  Similarity=0.278  Sum_probs=48.9

Q ss_pred             cCCeEEEEEECCCcc---hHH--HHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhC-----CCCcCCC
Q psy12794          9 NTDAIIYVVDSSDRD---RIG--ISKEELLAMLKEEELRDAILVILANKQDMKN--CMSVAEVHRALG-----LENLKDR   76 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~---~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~-----~~~~~~~   76 (106)
                      ++|.+++|+|++...   .|+  ...++...+++..  .-..++++.||.|+.+  +....++...+.     ...+...
T Consensus       278 qaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es  355 (603)
T KOG0458|consen  278 QADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKES  355 (603)
T ss_pred             ccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccC
Confidence            589999999997431   111  1112233344442  3478999999999864  111222222221     1112334


Q ss_pred             ceEEEEccccCCCChHH
Q psy12794         77 TFQIFKTSAKEGEGLND   93 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~   93 (106)
                      ++.|+.||+.+|+|+..
T Consensus       356 ~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  356 SVKFIPISGLSGENLIK  372 (603)
T ss_pred             CcceEecccccCCcccc
Confidence            67899999999999853

>KOG2484|consensus

Probab=97.04  E-value=0.0023  Score=42.24  Aligned_cols=59  Identities=20%  Similarity=0.195  Sum_probs=40.9

Q ss_pred             hhccCCeEEEEEECCCcchH--HHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhC
Q psy12794          6 YYSNTDAIIYVVDSSDRDRI--GISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG   69 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~   69 (106)
                      -+..+|+++.|.|+.+|.+-  .++..++..  .+   .++..|+|.||+|+......++...++.
T Consensus       143 vve~sDVVleVlDARDPlgtR~~~vE~~V~~--~~---gnKkLILVLNK~DLVPrEv~e~Wl~YLr  203 (435)
T KOG2484|consen  143 VVEASDVVLEVLDARDPLGTRCPEVEEAVLQ--AH---GNKKLILVLNKIDLVPREVVEKWLVYLR  203 (435)
T ss_pred             HHhhhheEEEeeeccCCCCCCChhHHHHHHh--cc---CCceEEEEeehhccCCHHHHHHHHHHHH
Confidence            35678999999999988542  233332211  12   4589999999999977666666666665

>KOG0410|consensus

Probab=97.03  E-value=0.00086  Score=43.32  Aligned_cols=83  Identities=19%  Similarity=0.247  Sum_probs=52.9

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe----EEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI----LVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p----~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      ...+|.++.|.|++.|. .+.........++.......|    ++=|-||+|..+...    .+       +++  -.+.
T Consensus       255 VaeadlllHvvDiShP~-ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~----e~-------E~n--~~v~  320 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPN-AEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV----EE-------EKN--LDVG  320 (410)
T ss_pred             HhhcceEEEEeecCCcc-HHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC----cc-------ccC--Cccc
Confidence            46789999999999875 444444556666664443333    445666666433211    10       111  2577


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||++|.|++++...+-..+.
T Consensus       321 isaltgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  321 ISALTGDGLEELLKAEETKVA  341 (410)
T ss_pred             cccccCccHHHHHHHHHHHhh
Confidence            999999999999887765543

>KOG0705|consensus

Probab=96.97  E-value=0.001  Score=45.72  Aligned_cols=95  Identities=11%  Similarity=0.201  Sum_probs=66.1

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCCceEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      .|-.-+|++||||...+..+|+.+......+.........|.++++++--....    ....+..+...    ....+.+
T Consensus        91 Qft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~----~~krcsy  166 (749)
T KOG0705|consen   91 QFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSA----QMKRCSY  166 (749)
T ss_pred             hhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHH----hcCccce
Confidence            355668999999999999999888765555544444566899999988543221    12222222222    3346789


Q ss_pred             EEccccCCCChHHHHHHHHHHHh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++.+|.+|.+++..|..++..+.
T Consensus       167 ~et~atyGlnv~rvf~~~~~k~i  189 (749)
T KOG0705|consen  167 YETCATYGLNVERVFQEVAQKIV  189 (749)
T ss_pred             eecchhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999887654

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.96  E-value=0.0041  Score=33.91  Aligned_cols=40  Identities=38%  Similarity=0.507  Sum_probs=26.6

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANK   52 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK   52 (106)
                      +..+|++++|+|.+++.. +... .+.+.++    .++|+++|+||
T Consensus        77 ~~~~d~ii~vv~~~~~~~-~~~~-~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   77 ISKSDLIIYVVDASNPIT-EDDK-NILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             HCTESEEEEEEETTSHSH-HHHH-HHHHHHH----TTSEEEEEEES
T ss_pred             HHHCCEEEEEEECCCCCC-HHHH-HHHHHHh----cCCCEEEEEcC
Confidence            478999999999776322 1122 2323332    46899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG0461|consensus

Probab=96.78  E-value=0.0083  Score=39.39  Aligned_cols=86  Identities=20%  Similarity=0.232  Sum_probs=47.0

Q ss_pred             CCeEEEEEECCCcchHHHHHHHH-HHHhcCcCCCCCeEEEEeeCCCCCCc-C---CHHHH----HHHhCCCCcCCCceEE
Q psy12794         10 TDAIIYVVDSSDRDRIGISKEEL-LAMLKEEELRDAILVILANKQDMKNC-M---SVAEV----HRALGLENLKDRTFQI   80 (106)
Q Consensus        10 ~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~p~ilv~nK~D~~~~-~---~~~~~----~~~~~~~~~~~~~~~~   80 (106)
                      .|..++|+|+............+ -+.      .-+..++|.||+|.... .   ..++.    ...+.... ...+.++
T Consensus        94 iDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~-f~g~~PI  166 (522)
T KOG0461|consen   94 IDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG-FDGNSPI  166 (522)
T ss_pred             eeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC-cCCCCce
Confidence            37789999997432222111111 121      23567888899986432 1   11111    22221111 1234689


Q ss_pred             EEccccCC----CChHHHHHHHHHHH
Q psy12794         81 FKTSAKEG----EGLNDSMDWLSNAL  102 (106)
Q Consensus        81 ~~~sa~~~----~~v~~~~~~l~~~~  102 (106)
                      +++||..|    +++.++.+.|...+
T Consensus       167 ~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  167 VEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             eEEecCCCccchhHHHHHHHHHHHhh
Confidence            99999999    67777777666554

>KOG0085|consensus

Probab=96.70  E-value=0.0016  Score=40.38  Aligned_cols=102  Identities=16%  Similarity=0.271  Sum_probs=65.2

Q ss_pred             chhhhhccCCeEEEEEECC----------CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSS----------DRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGL   70 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~   70 (106)
                      -|-|.+.++..++|++..+          +.+.+++....+.-.+..+...+.++|+..||.|+.+. .......+.+..
T Consensus       215 KWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe  294 (359)
T KOG0085|consen  215 KWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILYSHLADYFPE  294 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhhhhHHHHHHhCcc
Confidence            3777888887777776553          44566666666667777777788999999999997542 111122222211


Q ss_pred             C-------------------CcC---CCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         71 E-------------------NLK---DRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        71 ~-------------------~~~---~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .                   .++   ...+....++|.+.+|+.-+|..+.+.+.
T Consensus       295 ~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiL  349 (359)
T KOG0085|consen  295 FDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  349 (359)
T ss_pred             cCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHH
Confidence            0                   011   12234567788999999988887776554

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=96.61  E-value=0.027  Score=33.67  Aligned_cols=92  Identities=12%  Similarity=0.141  Sum_probs=49.9

Q ss_pred             hccCCeEEEEEECCCcchHHH--HHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHH--------HHHhCCCCcCCC
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGI--SKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEV--------HRALGLENLKDR   76 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~--------~~~~~~~~~~~~   76 (106)
                      ..+.|++++|++..+ .+-.+  ....+.+.+...  .-.++++++|+.|.......++.        ......  + ..
T Consensus        81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~--c-~~  154 (196)
T cd01852          81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK--C-GG  154 (196)
T ss_pred             CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH--h-CC
Confidence            467899999999876 23222  222232322210  12688999999996543222211        111110  0 01


Q ss_pred             ceEEEEc---cccCCCChHHHHHHHHHHHhh
Q psy12794         77 TFQIFKT---SAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        77 ~~~~~~~---sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .+..|.-   ++..+.++.++++.+.+.+.+
T Consensus       155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         155 RYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            1222221   356788899999999888764

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>smart00053 DYNc Dynamin, GTPase

Probab=96.59  E-value=0.029  Score=34.91  Aligned_cols=52  Identities=12%  Similarity=0.028  Sum_probs=32.5

Q ss_pred             hhhhhccC-CeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794          3 WRCYYSNT-DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC   58 (106)
Q Consensus         3 ~~~~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   58 (106)
                      ...|+++. +.+++|+|++....-.+... +.+.+..   .+++.++|.||.|..+.
T Consensus       155 v~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~ld~---~~~rti~ViTK~D~~~~  207 (240)
T smart00053      155 IKQFISKEECLILAVTPANVDLANSDALK-LAKEVDP---QGERTIGVITKLDLMDE  207 (240)
T ss_pred             HHHHHhCccCeEEEEEECCCCCCchhHHH-HHHHHHH---cCCcEEEEEECCCCCCc
Confidence            35677754 58999999865333222222 2222222   56899999999997653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0099|consensus

Probab=96.56  E-value=0.0083  Score=37.96  Aligned_cols=55  Identities=25%  Similarity=0.434  Sum_probs=37.5

Q ss_pred             chhhhhccCCeEEEEEECCCc----------chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDR----------DRIGISKEELLAMLKEEELRDAILVILANKQDMK   56 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   56 (106)
                      -|-..+.++.++|||+.+++-          +...+....+...-++..+....+|+..||.|+.
T Consensus       218 KWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDll  282 (379)
T KOG0099|consen  218 KWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL  282 (379)
T ss_pred             hHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHH
Confidence            488889999999999998732          1233333333333344444568999999999974

>PRK09602 translation-associated GTPase; Reviewed

Probab=96.48  E-value=0.0056  Score=40.72  Aligned_cols=54  Identities=22%  Similarity=0.225  Sum_probs=35.4

Q ss_pred             CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHH-HHHHHHHHH
Q psy12794         42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLND-SMDWLSNAL  102 (106)
Q Consensus        42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~-~~~~l~~~~  102 (106)
                      ..+|+++|+||.|.....  ..+.+....     ....++.+||+.+.++.+ +.+.+.+.+
T Consensus       216 t~KPvI~VlNK~D~~~~~--~~l~~i~~~-----~~~~vvpISA~~e~~l~~~l~~~i~~~l  270 (396)
T PRK09602        216 ISKPMVIAANKADLPPAE--ENIERLKEE-----KYYIVVPTSAEAELALRRAAKAGLIDYI  270 (396)
T ss_pred             cCCCEEEEEEchhcccch--HHHHHHHhc-----CCCcEEEEcchhhhhHHHHHHHhHHhhC
Confidence            469999999999964321  112222211     234689999999999988 566655543

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=96.42  E-value=0.029  Score=37.45  Aligned_cols=57  Identities=23%  Similarity=0.257  Sum_probs=35.0

Q ss_pred             CCCeEEEEeeCCCCCCcCCHH----HHHHHhC---CC-----------------CcCCCceEEEEccccCCCChHHHHHH
Q psy12794         42 RDAILVILANKQDMKNCMSVA----EVHRALG---LE-----------------NLKDRTFQIFKTSAKEGEGLNDSMDW   97 (106)
Q Consensus        42 ~~~p~ilv~nK~D~~~~~~~~----~~~~~~~---~~-----------------~~~~~~~~~~~~sa~~~~~v~~~~~~   97 (106)
                      .+.|++++.||+|+.......    ++...+.   ..                 .....-.|+|.+|+.+|.|++-+.+.
T Consensus       254 ~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~  333 (527)
T COG5258         254 MELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF  333 (527)
T ss_pred             hcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence            368999999999986542222    2222221   11                 00112368999999999998655444


Q ss_pred             H
Q psy12794         98 L   98 (106)
Q Consensus        98 l   98 (106)
                      +
T Consensus       334 f  334 (527)
T COG5258         334 F  334 (527)
T ss_pred             H
Confidence            3

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=96.38  E-value=0.016  Score=33.56  Aligned_cols=48  Identities=23%  Similarity=0.270  Sum_probs=31.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQ   53 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~   53 (106)
                      ++..|++.+|++++|.++++..+-.+.. .+.+....   ....+++|.||+
T Consensus       121 ~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~---~~~~~i~V~nk~  168 (168)
T PF00350_consen  121 ITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDP---DKSRTIFVLNKA  168 (168)
T ss_dssp             HHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTT---TCSSEEEEEE-G
T ss_pred             HHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcC---CCCeEEEEEcCC
Confidence            4678899999999999998754433333 34344333   334588889984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=96.27  E-value=0.01  Score=42.41  Aligned_cols=48  Identities=19%  Similarity=0.062  Sum_probs=31.3

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK   56 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   56 (106)
                      ..+++.+|++++|+|+.+........ .+.. ...   .+.|.++++||+|..
T Consensus       104 ~~al~~aD~~llVvda~~g~~~~t~~-~~~~-~~~---~~~p~ivviNKiD~~  151 (720)
T TIGR00490       104 TRAMRAVDGAIVVVCAVEGVMPQTET-VLRQ-ALK---ENVKPVLFINKVDRL  151 (720)
T ss_pred             HHHHHhcCEEEEEEecCCCCCccHHH-HHHH-HHH---cCCCEEEEEEChhcc
Confidence            34688999999999997643222211 1222 212   356888999999975

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=96.25  E-value=0.066  Score=36.30  Aligned_cols=56  Identities=21%  Similarity=0.286  Sum_probs=34.7

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---CHHHHHHHhC
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM---SVAEVHRALG   69 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~~~~~   69 (106)
                      -+|.+++|+|+...-...-.     +++.-+.+.+.|++-..||.|.....   -.+++.+.++
T Consensus       104 AvDsAvMVIDaAKGiE~qT~-----KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~  162 (528)
T COG4108         104 AVDSAVMVIDAAKGIEPQTL-----KLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELG  162 (528)
T ss_pred             hhheeeEEEecccCccHHHH-----HHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhC
Confidence            47899999999754333222     12222223679999999999975432   2345555555

>PTZ00416 elongation factor 2; Provisional

Probab=96.12  E-value=0.013  Score=42.63  Aligned_cols=46  Identities=22%  Similarity=0.154  Sum_probs=31.6

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK   56 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   56 (106)
                      .++.+|++++|+|+...-..... ..+.. ...   .++|++++.||+|+.
T Consensus       112 al~~~D~ailVvda~~g~~~~t~-~~~~~-~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416        112 ALRVTDGALVVVDCVEGVCVQTE-TVLRQ-ALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             HHhcCCeEEEEEECCCCcCccHH-HHHHH-HHH---cCCCEEEEEEChhhh
Confidence            46789999999999865333322 22323 222   358999999999975

>KOG0466|consensus

Probab=96.09  E-value=0.014  Score=37.75  Aligned_cols=58  Identities=14%  Similarity=0.175  Sum_probs=41.8

Q ss_pred             CeEEEEeeCCCCCCcC----CHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         44 AILVILANKQDMKNCM----SVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        44 ~p~ilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +.++++-||+|+....    ..+++..++...  ...+.+++.+||.-+.|++.+.+++++.+.
T Consensus       180 khiiilQNKiDli~e~~A~eq~e~I~kFi~~t--~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  180 KHIIILQNKIDLIKESQALEQHEQIQKFIQGT--VAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             ceEEEEechhhhhhHHHHHHHHHHHHHHHhcc--ccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            6899999999986532    122333333311  234569999999999999999999988764

>cd01850 CDC_Septin CDC/Septin

Probab=96.07  E-value=0.02  Score=36.35  Aligned_cols=44  Identities=14%  Similarity=0.260  Sum_probs=26.9

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      .+|+++++++.+... ....+..+.+.+..    ++|+++|+||+|+..
T Consensus       114 rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~----~v~vi~VinK~D~l~  157 (276)
T cd01850         114 RVHACLYFIEPTGHG-LKPLDIEFMKRLSK----RVNIIPVIAKADTLT  157 (276)
T ss_pred             ceEEEEEEEeCCCCC-CCHHHHHHHHHHhc----cCCEEEEEECCCcCC
Confidence            367888888876422 22222123333332    589999999999754

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=96.06  E-value=0.034  Score=35.89  Aligned_cols=74  Identities=23%  Similarity=0.243  Sum_probs=45.4

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCC-eEEEEeeCCCCCCcCC-----HHHHHHHhCCCCcCCCceEEEE
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDA-ILVILANKQDMKNCMS-----VAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      +.|+.|+|+.+++.+-+.-....+  +.+.   .+. -++++.||+|+.+...     ..++.+.+..+.+.....+++.
T Consensus        98 qmDgAILVVsA~dGpmPqTrEHiL--larq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~  172 (394)
T COG0050          98 QMDGAILVVAATDGPMPQTREHIL--LARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIR  172 (394)
T ss_pred             hcCccEEEEEcCCCCCCcchhhhh--hhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceee
Confidence            469999999998765333222111  1112   344 5677889999876322     2355666655555555678888


Q ss_pred             ccccC
Q psy12794         83 TSAKE   87 (106)
Q Consensus        83 ~sa~~   87 (106)
                      -||..
T Consensus       173 gSal~  177 (394)
T COG0050         173 GSALK  177 (394)
T ss_pred             chhhh
Confidence            88774

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=95.72  E-value=0.027  Score=41.02  Aligned_cols=45  Identities=24%  Similarity=0.167  Sum_probs=30.7

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK   56 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   56 (106)
                      .+.+|++++|+|+...-.... ...+.....    .++|++++.||+|..
T Consensus       119 l~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116        119 LRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             HhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence            577999999999986533222 122322222    468999999999976

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=95.50  E-value=0.13  Score=32.61  Aligned_cols=48  Identities=15%  Similarity=0.169  Sum_probs=30.2

Q ss_pred             cCCeEEEEEECCC---c--c-h-----HHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          9 NTDAIIYVVDSSD---R--D-R-----IGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         9 ~~d~~i~v~d~~~---~--~-~-----~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      -.+|+|+++|+.+   .  . +     -..+...+.++....+ .+.|+-+++||+|+..
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg-~~~PVYvv~Tk~D~l~   83 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLG-VRLPVYVVFTKCDLLP   83 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhC-CCCCeEeeeECCCccc
Confidence            4689999999862   1  1 1     1122233444433332 5799999999999765

>KOG3905|consensus

Probab=95.34  E-value=0.027  Score=36.78  Aligned_cols=59  Identities=12%  Similarity=0.057  Sum_probs=38.5

Q ss_pred             CCeEEEEeeCCCCCC----c-CCHH----HHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         43 DAILVILANKQDMKN----C-MSVA----EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        43 ~~p~ilv~nK~D~~~----~-~~~~----~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +.|++||++|+|...    . .-.+    .+...++ .++-..+...+.+|+++..|++-+..+|...+
T Consensus       222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lR-kFCLr~GaaLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLR-KFCLRYGAALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHH-HHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence            689999999999732    1 1111    1222221 11123456789999999999999888887543

>KOG0468|consensus

Probab=95.33  E-value=0.014  Score=41.34  Aligned_cols=45  Identities=18%  Similarity=0.249  Sum_probs=31.4

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM   55 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   55 (106)
                      .++.+|++++++|+...-.+.- .+.+....    ..+.|+++++||+|.
T Consensus       217 ~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai----q~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  217 SLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI----QNRLPIVVVINKVDR  261 (971)
T ss_pred             HhhhcceEEEEEEcccCceeeH-HHHHHHHH----hccCcEEEEEehhHH
Confidence            4678999999999976544332 12222322    257899999999994

>KOG0447|consensus

Probab=95.21  E-value=0.34  Score=34.19  Aligned_cols=64  Identities=13%  Similarity=0.283  Sum_probs=43.4

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALG   69 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~   69 (106)
                      -.+|+.|..++|+|+.-.+   .+.-+.-+..+.......++-.|+|.+|.|+.+.  .+.+.+.+.+.
T Consensus       442 sKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  442 SKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             HHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence            3579999999999986432   2222223555666655667889999999998754  35556666654

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=95.03  E-value=0.25  Score=33.63  Aligned_cols=43  Identities=23%  Similarity=0.327  Sum_probs=29.2

Q ss_pred             cCCeEEEEE-ECC----CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCC
Q psy12794          9 NTDAIIYVV-DSS----DRDRIGISKEELLAMLKEEELRDAILVILANKQD   54 (106)
Q Consensus         9 ~~d~~i~v~-d~~----~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   54 (106)
                      +++..++|. |.+    .+..+.+....+.+.++.   .++|++++.||+|
T Consensus       144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~---~~kPfiivlN~~d  191 (492)
T TIGR02836       144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE---LNKPFIILLNSTH  191 (492)
T ss_pred             cCcEEEEEEcCCCccccccccchHHHHHHHHHHHh---cCCCEEEEEECcC
Confidence            788888887 654    123455555444444554   6899999999999

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=94.84  E-value=0.4  Score=28.49  Aligned_cols=90  Identities=13%  Similarity=0.146  Sum_probs=55.7

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC-CcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK-NCMSVAEVHRALGLENLKDRTFQIFKTSAK   86 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~   86 (106)
                      ...|.|+|++|.++..++.....-+...-.+. ..++-++++-|=.... -.....++.+...     .+..+++.+.-.
T Consensus        63 prIDlIVFvinl~sk~SL~~ve~SL~~vd~~f-flGKVCfl~t~a~~~~~~sv~~~~V~kla~-----~y~~plL~~~le  136 (176)
T PF11111_consen   63 PRIDLIVFVINLHSKYSLQSVEASLSHVDPSF-FLGKVCFLATNAGRESHCSVHPNEVRKLAA-----TYNSPLLFADLE  136 (176)
T ss_pred             ceeEEEEEEEecCCcccHHHHHHHHhhCChhh-hccceEEEEcCCCcccccccCHHHHHHHHH-----HhCCCEEEeecc
Confidence            35789999999999988887765443321121 1245555544433322 1344555665553     345678888888


Q ss_pred             CCCChHHHHHHHHHHHh
Q psy12794         87 EGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        87 ~~~~v~~~~~~l~~~~~  103 (106)
                      +.++...+-+.|.+.++
T Consensus       137 ~~~~~~~lAqRLL~~lq  153 (176)
T PF11111_consen  137 NEEGRTSLAQRLLRMLQ  153 (176)
T ss_pred             cchHHHHHHHHHHHHHH
Confidence            88887777777776653

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PRK07560 elongation factor EF-2; Reviewed

Probab=94.80  E-value=0.087  Score=37.92  Aligned_cols=47  Identities=23%  Similarity=0.166  Sum_probs=30.2

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK   56 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   56 (106)
                      ..++.+|++++|+|+........ ...+.....    .+.|.+++.||+|+.
T Consensus       106 ~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~----~~~~~iv~iNK~D~~  152 (731)
T PRK07560        106 RAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALR----ERVKPVLFINKVDRL  152 (731)
T ss_pred             HHHHhcCEEEEEEECCCCCCccH-HHHHHHHHH----cCCCeEEEEECchhh
Confidence            35678999999999876533221 112222222    245779999999975

>KOG1143|consensus

Probab=94.78  E-value=0.2  Score=33.62  Aligned_cols=84  Identities=19%  Similarity=0.231  Sum_probs=48.0

Q ss_pred             CCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH----HHHHHhCCC--------------
Q psy12794         10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA----EVHRALGLE--------------   71 (106)
Q Consensus        10 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~~~~~--------------   71 (106)
                      .|...+|+.+...-.+..  ++..-+...   -+.|++++.+|+|+.+....+    ++...+...              
T Consensus       275 Ph~A~LvVsA~~Gi~~tT--rEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~dd  349 (591)
T KOG1143|consen  275 PHFACLVVSADRGITWTT--REHLGLIAA---LNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDD  349 (591)
T ss_pred             CceEEEEEEcCCCCcccc--HHHHHHHHH---hCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHH
Confidence            356777887765433221  112222222   478999999999987643322    222222211              


Q ss_pred             -------CcCCCceEEEEccccCCCChHHHHHHH
Q psy12794         72 -------NLKDRTFQIFKTSAKEGEGLNDSMDWL   98 (106)
Q Consensus        72 -------~~~~~~~~~~~~sa~~~~~v~~~~~~l   98 (106)
                             ....+..++|.+|..+|+|+.-+...|
T Consensus       350 Av~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  350 AVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             HHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence                   112234689999999999987655443

>KOG2486|consensus

Probab=94.68  E-value=0.02  Score=36.49  Aligned_cols=84  Identities=14%  Similarity=0.077  Sum_probs=45.9

Q ss_pred             eEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC------HHHHHHHh-CCC-CcCCCceEEEEc
Q psy12794         12 AIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS------VAEVHRAL-GLE-NLKDRTFQIFKT   83 (106)
Q Consensus        12 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------~~~~~~~~-~~~-~~~~~~~~~~~~   83 (106)
                      -+++++|.+.+-...+..  ...++.+   .++|+.+|+||+|......      ...+...+ +.. ......++++.+
T Consensus       222 ~~FLLvd~sv~i~~~D~~--~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~  296 (320)
T KOG2486|consen  222 RVFLLVDASVPIQPTDNP--EIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYV  296 (320)
T ss_pred             eeeeeeeccCCCCCCChH--HHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceee
Confidence            356677776442222211  2233333   6899999999999643211      11111101 100 001223568889


Q ss_pred             cccCCCChHHHHHHHHH
Q psy12794         84 SAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~  100 (106)
                      |+.++.|++.+.-.+++
T Consensus       297 Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  297 SSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ecccccCceeeeeehhh
Confidence            99999999988765544

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=94.56  E-value=0.22  Score=32.47  Aligned_cols=68  Identities=24%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             cCCeEEEEEECCCcchHHH-HHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          9 NTDAIIYVVDSSDRDRIGI-SKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      ..|+++-|+|+..-..... ......+.+..   .+   +++.||.|+.+..........+...   ....+++.+|.
T Consensus       116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD---~ivlNK~Dlv~~~~l~~l~~~l~~l---np~A~i~~~~~  184 (323)
T COG0523         116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---AD---VIVLNKTDLVDAEELEALEARLRKL---NPRARIIETSY  184 (323)
T ss_pred             eeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---Cc---EEEEecccCCCHHHHHHHHHHHHHh---CCCCeEEEccc
Confidence            3578999999875433222 33444444443   22   8889999997654444444444321   23346666665

>KOG2485|consensus

Probab=94.49  E-value=0.17  Score=32.84  Aligned_cols=57  Identities=19%  Similarity=0.098  Sum_probs=36.9

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhC
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG   69 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~   69 (106)
                      -.+..|.+|=|=|+.-|-|-+..  .+.+++     ..+|-|+|.||+|+.+......+.+.+.
T Consensus        43 ~l~~~D~iiEvrDaRiPLssrn~--~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~~~   99 (335)
T KOG2485|consen   43 RLPLVDCIIEVRDARIPLSSRNE--LFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQYLE   99 (335)
T ss_pred             hcccccEEEEeeccccCCccccH--HHHHhc-----CCCceEEEEecccccCchhhhHHHHHHH
Confidence            35678888888888655432221  133332     3689999999999987545555555554

>KOG0460|consensus

Probab=94.48  E-value=0.18  Score=33.34  Aligned_cols=74  Identities=20%  Similarity=0.231  Sum_probs=43.2

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-----HHHHHHHhCCCCcCCCceEEEEc
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-----VAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      +-|+.|+|+..++..-+.- ++.+ -+.++.  .=..+++..||.|+.+...     +-++++.+....+...+.|++.-
T Consensus       140 qMDGaILVVaatDG~MPQT-rEHl-LLArQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~G  215 (449)
T KOG0460|consen  140 QMDGAILVVAATDGPMPQT-REHL-LLARQV--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRG  215 (449)
T ss_pred             ccCceEEEEEcCCCCCcch-HHHH-HHHHHc--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeec
Confidence            3589999999987643322 2212 122221  2267888999999874321     22445555444445556788876


Q ss_pred             ccc
Q psy12794         84 SAK   86 (106)
Q Consensus        84 sa~   86 (106)
                      ||+
T Consensus       216 SAL  218 (449)
T KOG0460|consen  216 SAL  218 (449)
T ss_pred             chh
Confidence            665

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=94.33  E-value=0.14  Score=32.00  Aligned_cols=45  Identities=22%  Similarity=0.314  Sum_probs=30.3

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCC-CeEEEEeeCCCC
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRD-AILVILANKQDM   55 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK~D~   55 (106)
                      ..+++|.++.|+|++.+ +..-.. .+.++...   .+ +++.+|.||.|-
T Consensus       152 ~~~~vD~vivVvDpS~~-sl~tae-ri~~L~~e---lg~k~i~~V~NKv~e  197 (255)
T COG3640         152 TIEGVDLVIVVVDPSYK-SLRTAE-RIKELAEE---LGIKRIFVVLNKVDE  197 (255)
T ss_pred             cccCCCEEEEEeCCcHH-HHHHHH-HHHHHHHH---hCCceEEEEEeeccc
Confidence            35789999999998654 232222 23344444   34 899999999994

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=93.86  E-value=0.18  Score=36.20  Aligned_cols=60  Identities=17%  Similarity=0.136  Sum_probs=36.8

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---CHHHHHHHhC
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM---SVAEVHRALG   69 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~~~~~   69 (106)
                      ..++-+|+++.|+|+...-....- ..|.. ...   .+.|.+++.||+|.....   ...++.+.++
T Consensus        95 rslrvlDgavvVvdaveGV~~QTE-tv~rq-a~~---~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~  157 (697)
T COG0480          95 RSLRVLDGAVVVVDAVEGVEPQTE-TVWRQ-ADK---YGVPRILFVNKMDRLGADFYLVVEQLKERLG  157 (697)
T ss_pred             HHHHhhcceEEEEECCCCeeecHH-HHHHH-Hhh---cCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence            456778999999999754322211 12222 222   578999999999976532   3344444444

>KOG1954|consensus

Probab=93.86  E-value=0.24  Score=33.15  Aligned_cols=57  Identities=25%  Similarity=0.316  Sum_probs=34.7

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhC
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG   69 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~   69 (106)
                      |...||.|+++||+..-+-.++..+.+.. ++.   .+-.+-||.||.|..   ...+....++
T Consensus       178 FaeR~D~IiLlfD~hKLDIsdEf~~vi~a-LkG---~EdkiRVVLNKADqV---dtqqLmRVyG  234 (532)
T KOG1954|consen  178 FAERVDRIILLFDAHKLDISDEFKRVIDA-LKG---HEDKIRVVLNKADQV---DTQQLMRVYG  234 (532)
T ss_pred             HHHhccEEEEEechhhccccHHHHHHHHH-hhC---CcceeEEEecccccc---CHHHHHHHHH
Confidence            45689999999998754333333322322 333   345778899999954   3444544444

>KOG0463|consensus

Probab=93.62  E-value=0.13  Score=34.47  Aligned_cols=56  Identities=23%  Similarity=0.238  Sum_probs=35.4

Q ss_pred             CCeEEEEeeCCCCCCcCCHHH----HHHHhCCC---------------------CcCCCceEEEEccccCCCChHHHHHH
Q psy12794         43 DAILVILANKQDMKNCMSVAE----VHRALGLE---------------------NLKDRTFQIFKTSAKEGEGLNDSMDW   97 (106)
Q Consensus        43 ~~p~ilv~nK~D~~~~~~~~~----~~~~~~~~---------------------~~~~~~~~~~~~sa~~~~~v~~~~~~   97 (106)
                      .+|+++|.+|+|+....-..+    +...+...                     +....-+++|.+|..+|+|+.-+...
T Consensus       273 ~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF  352 (641)
T KOG0463|consen  273 HVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF  352 (641)
T ss_pred             cCcEEEEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence            689999999999865322222    22222211                     01123378999999999998876655


Q ss_pred             H
Q psy12794         98 L   98 (106)
Q Consensus        98 l   98 (106)
                      |
T Consensus       353 L  353 (641)
T KOG0463|consen  353 L  353 (641)
T ss_pred             H
Confidence            4

>KOG3886|consensus

Probab=93.24  E-value=0.79  Score=28.87  Aligned_cols=51  Identities=25%  Similarity=0.335  Sum_probs=33.5

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHH---HHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISK---EELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      +.+++.++++++||+.+.+--.+.+   .-++.++++  ..+..++....|.|+..
T Consensus        77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~  130 (295)
T KOG3886|consen   77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQ  130 (295)
T ss_pred             hhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcc
Confidence            4578999999999998664322222   112333333  24567888999999864

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=92.89  E-value=0.2  Score=34.38  Aligned_cols=59  Identities=17%  Similarity=0.161  Sum_probs=38.4

Q ss_pred             CCeEEEEeeCCCCCCc----C-----CHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         43 DAILVILANKQDMKNC----M-----SVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        43 ~~p~ilv~nK~D~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +.|++||++|.|....    .     ..+-+.+.++ ..+-.++...+.+|+++..+++-+...|.-.+
T Consensus       196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR-~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l  263 (472)
T PF05783_consen  196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR-TFCLKYGASLIYTSVKEEKNLDLLYKYILHRL  263 (472)
T ss_pred             CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH-HHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence            4799999999995321    1     1122333332 11134567888999999999998888766544

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0448|consensus

Probab=92.41  E-value=0.7  Score=33.19  Aligned_cols=51  Identities=18%  Similarity=0.294  Sum_probs=32.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      +...+..++|++|+|....+.-+-.+.. ++... ..   .++.++++-||+|...
T Consensus       225 wid~~cldaDVfVlV~NaEntlt~sek~-Ff~~v-s~---~KpniFIlnnkwDasa  275 (749)
T KOG0448|consen  225 WIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKV-SE---EKPNIFILNNKWDASA  275 (749)
T ss_pred             HHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHh-hc---cCCcEEEEechhhhhc
Confidence            3466788999999999886543333322 22222 22   2567888889999754

>COG3596 Predicted GTPase [General function prediction only]

Probab=92.32  E-value=1.3  Score=28.53  Aligned_cols=97  Identities=15%  Similarity=0.156  Sum_probs=56.9

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---------CHHHHHHHhCCCC--
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM---------SVAEVHRALGLEN--   72 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---------~~~~~~~~~~~~~--   72 (106)
                      ..|....|.++++.+..++.--.+.+ ++.+....  ..+++++++.|.+|.....         ....+.+......  
T Consensus       112 ~d~l~~~DLvL~l~~~~draL~~d~~-f~~dVi~~--~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~  188 (296)
T COG3596         112 RDYLPKLDLVLWLIKADDRALGTDED-FLRDVIIL--GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA  188 (296)
T ss_pred             HHHhhhccEEEEeccCCCccccCCHH-HHHHHHHh--ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence            34667789999999998764221111 23333332  1358999999999964320         1111111111000  


Q ss_pred             ---cCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         73 ---LKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        73 ---~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                         +-..-.+++..|+..+-|++++...+++.+.
T Consensus       189 ~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         189 LGRLFQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence               0001236777788999999999999988765

>cd03112 CobW_like The function of this protein family is unkown

Probab=91.37  E-value=0.34  Score=28.10  Aligned_cols=42  Identities=24%  Similarity=0.192  Sum_probs=22.5

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM   55 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   55 (106)
                      ...+++++++|+.+...+.+-...+.+.+..      -=+++.||+|+
T Consensus       117 ~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~------ad~ivlnk~dl  158 (158)
T cd03112         117 YLLDGVITLVDAKHANQHLDQQTEAQSQIAF------ADRILLNKTDL  158 (158)
T ss_pred             eeeccEEEEEEhhHhHHHhhccHHHHHHHHH------CCEEEEecccC
Confidence            3578899999975432211111223333332      22668999885

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG1487|consensus

Probab=91.15  E-value=0.19  Score=32.10  Aligned_cols=79  Identities=16%  Similarity=0.135  Sum_probs=47.6

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      .|-.++..+.+=+|++.    ++    +...+... ..-.|.+.+.||+|-.   +.++..=.       ......+.+|
T Consensus       202 eyR~hsAdi~Lr~DaT~----Dd----LIdvVegn-r~yVp~iyvLNkIdsI---SiEELdii-------~~iphavpIS  262 (358)
T KOG1487|consen  202 EYRIHSADIALRFDATA----DD----LIDVVEGN-RIYVPCIYVLNKIDSI---SIEELDII-------YTIPHAVPIS  262 (358)
T ss_pred             HhhhcchheeeecCcch----hh----hhhhhccC-ceeeeeeeeeccccee---eeecccee-------eeccceeecc
Confidence            34445555666666643    22    22333331 1247999999999932   22221111       1234678999


Q ss_pred             ccCCCChHHHHHHHHHHH
Q psy12794         85 AKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~  102 (106)
                      |..+.|.+++.+.+.+.+
T Consensus       263 A~~~wn~d~lL~~mweyL  280 (358)
T KOG1487|consen  263 AHTGWNFDKLLEKMWEYL  280 (358)
T ss_pred             cccccchHHHHHHHhhcc
Confidence            999999999998877654

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=91.02  E-value=1.9  Score=27.61  Aligned_cols=46  Identities=15%  Similarity=0.134  Sum_probs=33.1

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK   56 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   56 (106)
                      .+.++|.++.|..+| +..+.+..+ ..+..++   .+.|..+|.||.+..
T Consensus       182 sl~~aD~ai~VTEPT-p~glhD~kr-~~el~~~---f~ip~~iViNr~~~g  227 (284)
T COG1149         182 SLKGADLAILVTEPT-PFGLHDLKR-ALELVEH---FGIPTGIVINRYNLG  227 (284)
T ss_pred             hhccCCEEEEEecCC-ccchhHHHH-HHHHHHH---hCCceEEEEecCCCC
Confidence            467899999998876 335555554 3445555   578999999999643

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=90.57  E-value=0.41  Score=30.10  Aligned_cols=27  Identities=22%  Similarity=0.247  Sum_probs=24.0

Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      -.+++..||+++.|++.+++.+...+.
T Consensus       240 ~~pv~~gSa~~~~G~~~ll~~~~~~~p  266 (268)
T cd04170         240 LVPVLCGSALTNIGVRELLDALVHLLP  266 (268)
T ss_pred             EEEEEEeeCCCCcCHHHHHHHHHHhCC
Confidence            468999999999999999999988764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=89.83  E-value=1.5  Score=33.66  Aligned_cols=49  Identities=10%  Similarity=0.114  Sum_probs=32.1

Q ss_pred             ccCCeEEEEEECCCcc--h-------HHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          8 SNTDAIIYVVDSSDRD--R-------IGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~--~-------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      +-.+|+|+++|+.+--  +       -..++..+.++....+ ...|+-+++||+|+..
T Consensus       200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLA  257 (1169)
T ss_pred             CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhc
Confidence            4589999999986321  1       1233334445444433 4789999999999764

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=89.39  E-value=2.6  Score=24.66  Aligned_cols=47  Identities=13%  Similarity=0.225  Sum_probs=31.5

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      .+..+|.+++++.++.. +.......+. .++.   .+.|+.++.||+|...
T Consensus       111 ~l~~aD~vliv~~~~~~-~~~~~~~~~~-~l~~---~~~~~~vV~N~~~~~~  157 (179)
T cd03110         111 SLTGADAALLVTEPTPS-GLHDLERAVE-LVRH---FGIPVGVVINKYDLND  157 (179)
T ss_pred             HHHcCCEEEEEecCCcc-cHHHHHHHHH-HHHH---cCCCEEEEEeCCCCCc
Confidence            45789999999988743 4555444343 3333   3467889999999643

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=89.11  E-value=3.5  Score=27.56  Aligned_cols=66  Identities=24%  Similarity=0.285  Sum_probs=45.3

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCC
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLE   71 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~   71 (106)
                      ..++.++|-+++|++.+=+ +.....+.+. .++.......+..+++||...+...+..++.+.++..
T Consensus       234 ~~vL~~Sd~iviv~e~sl~-slR~ak~lld-~l~~~r~~~~~p~lv~n~~~~~~~~~~~dl~~~~~i~  299 (366)
T COG4963         234 RQVLSGSDEIVIVAEPSLA-SLRNAKELLD-ELKRLRPNDPKPILVLNRVGVPKRPEPSDLEEILGIE  299 (366)
T ss_pred             HHHHhcCCeEEEEecccHH-HHHHHHHHHH-HHHHhCCCCCCceEEeeecCCCCCCCHHHHHHHhCCc
Confidence            4578899999999987633 4444444343 3444444678889999999977655666777777654

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=88.80  E-value=0.56  Score=27.70  Aligned_cols=45  Identities=31%  Similarity=0.267  Sum_probs=27.9

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM   59 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~   59 (106)
                      ..+.+|.|+|+.+-.........+.+.+..      -=+++.||+|+.+..
T Consensus       113 ~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~~~~  157 (178)
T PF02492_consen  113 RLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLVSDE  157 (178)
T ss_dssp             SESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH
T ss_pred             cccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccCChh
Confidence            457899999996643333444445555544      228889999986543

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=88.14  E-value=1.1  Score=29.80  Aligned_cols=40  Identities=13%  Similarity=0.104  Sum_probs=26.3

Q ss_pred             CCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794         42 RDAILVILANKQDMKNCMS---VAEVHRALGLENLKDRTFQIFKTSAK   86 (106)
Q Consensus        42 ~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~sa~   86 (106)
                      ..+|+++++||.|......   ...+.+...     ..+.+++.+||.
T Consensus       205 t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~-----~~~~~vV~~sA~  247 (372)
T COG0012         205 TAKPMLYVANVSEDDLANLNEYVKRLKELAA-----KENAEVVPVSAA  247 (372)
T ss_pred             hcCCeEEEEECCcccccchhHHHHHHHHHhh-----hcCCcEEEeeHH
Confidence            5799999999999764322   334444442     233568888887

>PTZ00258 GTP-binding protein; Provisional

Probab=87.77  E-value=0.76  Score=30.87  Aligned_cols=43  Identities=19%  Similarity=0.118  Sum_probs=25.8

Q ss_pred             CCCeEEEEeeCC--CCC-C-cCCHHHHHHHhCCCCcCCCceEEEEccccCC
Q psy12794         42 RDAILVILANKQ--DMK-N-CMSVAEVHRALGLENLKDRTFQIFKTSAKEG   88 (106)
Q Consensus        42 ~~~p~ilv~nK~--D~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~   88 (106)
                      ..+|+++++|+.  |+. . .....++.+....    ..+.+++.+||+..
T Consensus       219 t~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~----~~~~~~v~~sa~~E  265 (390)
T PTZ00258        219 TAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGE----KGGGPIIPYSAEFE  265 (390)
T ss_pred             hcCCEEEEEECchhhhcccchHHHHHHHHHHHh----cCCCeEEEeeHHHH
Confidence            469999999999  752 2 1223344444431    11357888888644

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=87.54  E-value=0.99  Score=28.68  Aligned_cols=28  Identities=18%  Similarity=0.265  Sum_probs=24.5

Q ss_pred             CceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         76 RTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .-+|++..||.++.|+..+++.+...+.
T Consensus       241 ~~~PV~~gSa~~~~Gi~~lld~i~~~~p  268 (270)
T cd01886         241 KIVPVLCGSAFKNKGVQPLLDAVVDYLP  268 (270)
T ss_pred             cEEEEEeCcCCCCcCHHHHHHHHHHhcC
Confidence            3479999999999999999999988764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function

Probab=85.91  E-value=0.79  Score=28.06  Aligned_cols=51  Identities=10%  Similarity=0.124  Sum_probs=35.9

Q ss_pred             chhhhhccCCeEEEE-EECCCc-----chHHHHHHHHHHHhcCcCCCCCeEEEEeeCC
Q psy12794          2 YWRCYYSNTDAIIYV-VDSSDR-----DRIGISKEELLAMLKEEELRDAILVILANKQ   53 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v-~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~   53 (106)
                      +|..+|++++...++ .+..+.     -.+.++..-+..++++.. .++|+||++.=.
T Consensus        48 vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQ  104 (207)
T PF11288_consen   48 VFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQ  104 (207)
T ss_pred             cccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCh
Confidence            577789999988887 333221     136777777888887754 568999998754

>PRK14974 cell division protein FtsY; Provisional

Probab=85.78  E-value=6.4  Score=26.05  Aligned_cols=71  Identities=17%  Similarity=0.198  Sum_probs=37.6

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH-HHHHHHhCCCCcCCCceEEEEccccC
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV-AEVHRALGLENLKDRTFQIFKTSAKE   87 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sa~~   87 (106)
                      +.|..++|.|++....   .......+...   . ..--+++||.|....... -.+....        +.|+..++  +
T Consensus       252 ~pd~~iLVl~a~~g~d---~~~~a~~f~~~---~-~~~giIlTKlD~~~~~G~~ls~~~~~--------~~Pi~~i~--~  314 (336)
T PRK14974        252 KPDLVIFVGDALAGND---AVEQAREFNEA---V-GIDGVILTKVDADAKGGAALSIAYVI--------GKPILFLG--V  314 (336)
T ss_pred             CCceEEEeeccccchh---HHHHHHHHHhc---C-CCCEEEEeeecCCCCccHHHHHHHHH--------CcCEEEEe--C
Confidence            4677788888765322   11112222221   1 245677999996543221 1222222        33555555  7


Q ss_pred             CCChHHHHH
Q psy12794         88 GEGLNDSMD   96 (106)
Q Consensus        88 ~~~v~~~~~   96 (106)
                      |++++++..
T Consensus       315 Gq~v~Dl~~  323 (336)
T PRK14974        315 GQGYDDLIP  323 (336)
T ss_pred             CCChhhccc
Confidence            899987754

>KOG0465|consensus

Probab=85.72  E-value=6.4  Score=28.39  Aligned_cols=49  Identities=14%  Similarity=0.110  Sum_probs=30.4

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC   58 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   58 (106)
                      ..++-.|++|+++|....-......  ..+.+..   .++|.+...||.|..+.
T Consensus       123 RALrVlDGaVlvl~aV~GVqsQt~t--V~rQ~~r---y~vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  123 RALRVLDGAVLVLDAVAGVESQTET--VWRQMKR---YNVPRICFINKMDRMGA  171 (721)
T ss_pred             hhhhhccCeEEEEEcccceehhhHH--HHHHHHh---cCCCeEEEEehhhhcCC
Confidence            3456779999999886432221111  2222222   57999999999997543

>KOG1486|consensus

Probab=85.57  E-value=4.4  Score=26.05  Aligned_cols=50  Identities=20%  Similarity=0.167  Sum_probs=36.5

Q ss_pred             CeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         44 AILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        44 ~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .+++.|.||+|   +.+.+++....+.+       ..+-+|..-.-|++.+.+.+.+.+.
T Consensus       239 ~~ClYvYnKID---~vs~eevdrlAr~P-------nsvViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  239 IKCLYVYNKID---QVSIEEVDRLARQP-------NSVVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EEEEEEeeccc---eecHHHHHHHhcCC-------CcEEEEeccccCHHHHHHHHHHHhc
Confidence            69999999999   45667777766532       2344566677899999998887653

>KOG0459|consensus

Probab=85.05  E-value=1.3  Score=30.13  Aligned_cols=55  Identities=20%  Similarity=0.190  Sum_probs=33.8

Q ss_pred             CCCeEEEEeeCCCCCCcC----CHHH----HHHHhCCCCc-CCCceEEEEccccCCCChHHHHH
Q psy12794         42 RDAILVILANKQDMKNCM----SVAE----VHRALGLENL-KDRTFQIFKTSAKEGEGLNDSMD   96 (106)
Q Consensus        42 ~~~p~ilv~nK~D~~~~~----~~~~----~~~~~~~~~~-~~~~~~~~~~sa~~~~~v~~~~~   96 (106)
                      .-+..+++.||+|.+.-.    ...+    +...+..... ......++.+|..+|.++.+..+
T Consensus       216 gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  216 GVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             ccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            347889999999986521    1222    2222221111 22456899999999999886543

>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins

Probab=84.99  E-value=0.58  Score=25.67  Aligned_cols=31  Identities=23%  Similarity=0.263  Sum_probs=13.5

Q ss_pred             EeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794         49 LANKQDMKNC-MSVAEVHRALGLENLKDRTFQIFKTSAK   86 (106)
Q Consensus        49 v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sa~   86 (106)
                      ++||+|++.. .....+.+.+.       ...++.|||.
T Consensus         1 AaNK~D~~~a~~ni~kl~~~~~-------~~~vVp~SA~   32 (109)
T PF08438_consen    1 AANKADLPAADENIEKLKEKYP-------DEPVVPTSAA   32 (109)
T ss_dssp             EEE-GGG-S-HHHHHHHHHHHT-------T-EEEEE-HH
T ss_pred             CCccccccccHhHHHHHHHhCC-------CCceeeccHH
Confidence            5799997432 22334444332       2355666654

; PDB: 1WXQ_A.

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=81.77  E-value=15  Score=26.11  Aligned_cols=57  Identities=16%  Similarity=0.135  Sum_probs=33.0

Q ss_pred             CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE--EccccCCCChHHHHHHHHHHHh
Q psy12794         42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF--KTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .+.|++|+.||.|.........+.+...     ..++++.  ..-++-|+|--++-+.+.+.+.
T Consensus       371 FGvPvVVAINKFd~DTe~Ei~~I~~~c~-----e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~  429 (557)
T PRK13505        371 FGVPVVVAINKFVTDTDAEIAALKELCE-----ELGVEVALSEVWAKGGEGGVELAEKVVELIE  429 (557)
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHH-----HcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence            5799999999999643323333444442     2233333  4445556676666666655443

>KOG0467|consensus

Probab=81.31  E-value=4  Score=30.08  Aligned_cols=45  Identities=16%  Similarity=0.054  Sum_probs=27.2

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCC
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQD   54 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   54 (106)
                      ..-+-+|+++.++|+...-...... .+.....    .+..+++|.||+|
T Consensus        91 sas~l~d~alvlvdvvegv~~qt~~-vlrq~~~----~~~~~~lvinkid  135 (887)
T KOG0467|consen   91 SASRLSDGALVLVDVVEGVCSQTYA-VLRQAWI----EGLKPILVINKID  135 (887)
T ss_pred             hhhhhcCCcEEEEeeccccchhHHH-HHHHHHH----ccCceEEEEehhh
Confidence            3456789999999997542222111 1211111    3456788999999

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=81.13  E-value=6.3  Score=20.81  Aligned_cols=25  Identities=12%  Similarity=0.105  Sum_probs=14.8

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHH
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGI   27 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~   27 (106)
                      ++.-+.++|.+|++.|.-+-.....
T Consensus        42 l~~~i~~aD~VIv~t~~vsH~~~~~   66 (97)
T PF10087_consen   42 LPSKIKKADLVIVFTDYVSHNAMWK   66 (97)
T ss_pred             HHHhcCCCCEEEEEeCCcChHHHHH
Confidence            3444566777777777765444433

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=80.83  E-value=14  Score=25.02  Aligned_cols=88  Identities=14%  Similarity=0.133  Sum_probs=42.3

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC---------CCcCCHHHH----HH----HhC
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM---------KNCMSVAEV----HR----ALG   69 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~---------~~~~~~~~~----~~----~~~   69 (106)
                      +..-|.+|++.+.    .|.+.+.++...++.   .++|+..|.+|+|.         +.....+++    ++    .+.
T Consensus       112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~  184 (376)
T PF05049_consen  112 FYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ  184 (376)
T ss_dssp             GGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence            3456777776643    455555445555554   57999999999994         111122222    22    221


Q ss_pred             CCCcCCCceEEEEccccCCC--ChHHHHHHHHHHHh
Q psy12794         70 LENLKDRTFQIFKTSAKEGE--GLNDSMDWLSNALQ  103 (106)
Q Consensus        70 ~~~~~~~~~~~~~~sa~~~~--~v~~~~~~l~~~~~  103 (106)
                      ..  .-...++|.+|..+-.  +...+.+.|.+.+.
T Consensus       185 k~--gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp  218 (376)
T PF05049_consen  185 KA--GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP  218 (376)
T ss_dssp             CT--T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred             Hc--CCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence            11  1134578888887644  45667777776554

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=80.22  E-value=5.7  Score=26.27  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=14.9

Q ss_pred             EEEEeeCCCCCCcCCHHHHHHHh
Q psy12794         46 LVILANKQDMKNCMSVAEVHRAL   68 (106)
Q Consensus        46 ~ilv~nK~D~~~~~~~~~~~~~~   68 (106)
                      =++++||+|+.+......+.+.+
T Consensus       176 D~IvlnK~Dl~~~~~l~~~~~~l  198 (341)
T TIGR02475       176 DLVILNKADLLDAAGLARVRAEI  198 (341)
T ss_pred             CEEEEeccccCCHHHHHHHHHHH
Confidence            38889999987654444444443

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		8e-32
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		2e-31
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		1e-28
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		8e-25
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		1e-22
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		2e-22
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-21
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		6e-21
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		7e-21
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		7e-21
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		7e-21
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		7e-21
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		7e-21
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		9e-21
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		4e-20
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		7e-20
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		9e-20
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		9e-20
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		2e-18
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		5e-18
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		6e-18
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		8e-18
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		8e-18
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		1e-17
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-17
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		2e-17
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		2e-17
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-17
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-17
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-17
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		2e-17
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		3e-17
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		1e-16
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		3e-16
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		3e-16
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-16
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-16
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		9e-13
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		2e-12
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		2e-12
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		2e-12
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		4e-12
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		2e-11
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		4e-08
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		4e-08
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		6e-08
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-07
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-06
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		9e-04

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score =  131 bits (330), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 74/105 (70%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDA+IYVVDS DRDRIGIS             R AILV+ ANKQDM+  M+
Sbjct: 61  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 120
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            +E+  ALGL  LKDR +QIFKTSA +G GL+++M+WL   L+  
Sbjct: 121 PSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 74/103 (71%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDA+IYVVDS DRDRIGIS             R AILV+ ANKQDM+  M+
Sbjct: 63  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 122
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
            +E+  +LGL  LKDR +QIFKTSA +G GL+++M+WL   L+
Sbjct: 123 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 165

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 71/103 (68%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDA+IYVVDS DRDRIGIS             R AILV+ ANKQD +   +
Sbjct: 66  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXT 125
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
            +E   +LGL  LKDR +QIFKTSA +G GL+++ +WL   L+
Sbjct: 126 SSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLK 168

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score =  108 bits (270), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 72/105 (68%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           PYWRCY+S+TDA+IYVVDS+DRDR+G++             R ++L+I ANKQD+ +  S
Sbjct: 81  PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS 140
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            AE+   LG+ ++ +RT+ I K+S+K G+GL + MDWL   L++ 
Sbjct: 141 EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 66/104 (63%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DR+R+  S             RDA+L++ ANKQDM N M 
Sbjct: 88  PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP 147
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
           V+E+   LGL++L+ RT+ +  T A +G GL D +DWLS+ L K
Sbjct: 148 VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 68/105 (64%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           PYWRCYY++T A+I+VVDS+D+DR+  +             +DA L++ ANKQD    +S
Sbjct: 77  PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS 136
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            +EV + L L  LKDR++ I  +SA +GEG+ + +DWL + +++ 
Sbjct: 137 ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 67/105 (63%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P W+ Y+ NT  +I+VVDS+DR+RI                RDA+L++ ANKQD+ N M+
Sbjct: 76  PLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMA 135
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
           ++E+   LGL++L++RT+ +  T A +G GL + +DWLSN L K 
Sbjct: 136 ISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DR+R+  +             RDA+L++ ANKQD+ N M+
Sbjct: 76  PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 135
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            AE+   LGL +L+ R + I  T A  G+GL + +DWLSN L+  
Sbjct: 136 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DR+R+  +             RDA+L++ ANKQD+ N M+
Sbjct: 59  PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            AE+   LGL +L+ R + I  T A  G+GL + +DWLSN L+  
Sbjct: 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DR+R+  +             RDA+L++ ANKQD+ N M+
Sbjct: 61  PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 120
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            AE+   LGL +L+ R + I  T A  G+GL + +DWLSN L+  
Sbjct: 121 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 165

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DR+R+  +             RDA+L++ ANKQD+ N M+
Sbjct: 75  PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 134
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            AE+   LGL +L+ R + I  T A  G+GL + +DWLSN L+  
Sbjct: 135 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 179

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR YY NT AII+VVDS+DRDRIG +             R+AIL++ ANK D+   MS
Sbjct: 76  PLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMS 135
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           ++EV   LGL+ +K+R +    + A  G+GL + +DWL++ L+
Sbjct: 136 ISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNLK 178

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 62/100 (62%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DRDR+  +             RDA+L++ ANKQD+ N M+
Sbjct: 79  PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 138
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
            AE+   LGL +L+ R + I  T A  GEGL + +DWLSN
Sbjct: 139 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 178

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DR+R+  +             RDA+L++ ANKQD+ N M+
Sbjct: 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 283
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            AE+   LGL +L+ R + I  T A  G+GL + +DWLSN L+  
Sbjct: 284 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 62/102 (60%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR YYSNTD +I+VVDS+DR+RI  +             +DAI+++ ANKQD+ N MS
Sbjct: 76  PLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMS 135
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
            AEV   L L  +++R + I  T A  G+GL +  DWL+  L
Sbjct: 136 AAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHL 177

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 63/103 (61%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           WR YY NT+ +I+V+DS+DR RIG +             R+A+ ++ ANKQD+   MS A
Sbjct: 78  WRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAA 137
Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
           E+   LGL ++++R + I  T A  GEGL + ++WLSN L+  
Sbjct: 138 EITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQ 180

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 91.7 bits (226), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 63/101 (62%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           WR YY NT+ +I+VVDS+DR RIG +             R+A  ++ ANKQD+   MS A
Sbjct: 78  WRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAA 137
Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           E+   LGL ++++R + I  T A  GEGL + ++WLSN+L+
Sbjct: 138 EITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLK 178

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 91.7 bits (226), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 63/101 (62%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           WR YY NT+ +I+VVDS+DR RIG +             R+A  ++ ANKQD+   MS A
Sbjct: 61  WRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAA 120
Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           E+   LGL ++++R + I  T A  GEGL + ++WLSN+L+
Sbjct: 121 EITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLK 161

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 61/101 (60%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           WR YY NT+ +I+VVDS+DR RIG +              +A  ++ ANKQD+   MS A
Sbjct: 78  WRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAA 137
Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           E+   LGL ++++R + I  T A  GEGL + ++WLSN L+
Sbjct: 138 EITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNCLK 178

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 58/98 (59%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           W  YYSNT+ II VVDS DR+R+ I+             R A ++I ANKQDMK CM+ A
Sbjct: 77  WNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAA 136
Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
           E+ + L L ++KD  + I    A  GEGL   ++W+++
Sbjct: 137 EISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTS 174

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 62/104 (59%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           W  YY+NT+ +I VVDS+DR+RI ++             R A L+I ANKQD+K CM+VA
Sbjct: 77  WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA 136
Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
           E+ + L L ++KD  + I    A  GEGL   ++W+ + L+  L
Sbjct: 137 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL 180

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 61/101 (60%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           W  YY+NT+ +I VVDS+DR+RI ++             R A L+I ANKQD+K CM+VA
Sbjct: 83  WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA 142
Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           E+ + L L ++KD  + I    A  GEGL   ++W+ + L+
Sbjct: 143 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 183

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 61/101 (60%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           W  YY+NT+ +I VVDS+DR+RI ++             R A L+I ANKQD+K CM+VA
Sbjct: 77  WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA 136
Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           E+ + L L ++KD  + I    A  GEGL   ++W+ + L+
Sbjct: 137 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 60/100 (60%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           W  YY+NT+ +I VVDS+DR+RI ++             R A L+I ANKQD+K CM+VA
Sbjct: 82  WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA 141
Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
           E+ + L L ++KD  + I    A  GEGL   ++W+ + L
Sbjct: 142 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 60/106 (56%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR YY+ T  +I+VVD +DRDRI  +             RDAI++I ANKQD+ + M 
Sbjct: 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 440
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
             E+   LGL  ++DR + +  + A  G+GL + + WL++  +  L
Sbjct: 441 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR YY+ T  +I+VVD +DRDRI  +             RDAI++I ANKQD+ + M 
Sbjct: 61  PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 120
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
             E+   LGL  ++DR + +  + A  G+GL + + WL++
Sbjct: 121 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 160

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR YY+ T  +I+VVD +DRDRI  +             RDAI++I ANKQD+ + M 
Sbjct: 71  PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 130
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
             E+   LGL  ++DR + +  + A  G+GL + + WL++
Sbjct: 131 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 170

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR YY+ T  +I+VVD +DRDRI  +             RDAI++I ANKQD+ + M 
Sbjct: 59  PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 118
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
             E+   LGL  ++DR + +  + A  G+GL + + WL++
Sbjct: 119 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 158

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR YY+ T  +I+VVD +DRDRI  +             RDAI++I ANKQD+ + M 
Sbjct: 72  PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
             E+   LGL  ++DR + +  + A  G+GL + + WL++
Sbjct: 132 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR YY+ T  +I+VVD +DRDRI  +             RDAI++I ANKQD+ + M 
Sbjct: 59  PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 118
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
             E+   LGL  ++DR + +  + A  G+GL + + WL++
Sbjct: 119 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 158

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR YY+ T  +I+VVD +DRDRI  +             RDAI++I ANKQD+ + M 
Sbjct: 62  PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 121
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
             E+   LGL  ++DR + +  + A  G+GL + + WL++
Sbjct: 122 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 161

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR YY+ T  +I+VVD +DRDRI  +             RDAI++I ANKQD+ + M 
Sbjct: 72  PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
             E+   LGL  ++DR + +  + A  G+GL + + WL++
Sbjct: 132 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           P WR YY+ T  +I+VVD +DRDRI  +             RDAI++I ANKQD+ +   
Sbjct: 59  PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXK 118
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
             E+   LGL  ++DR + +  + A  G+GL + + WL++
Sbjct: 119 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 158

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 53/98 (54%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           PYWR Y+ NTD +IYV+DS+DR R   +                 ++I ANKQD+     
Sbjct: 75  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 134
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
            +E+   L L  ++DR +QI   SA  GEG+ D M+W+
Sbjct: 135 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 53/98 (54%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           PYWR Y+ NTD +IYV+DS+DR R   +                 ++I ANKQD+     
Sbjct: 76  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
            +E+   L L  ++DR +QI   SA  GEG+ D M+W+
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 173

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 53/98 (54%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           PYWR Y+ NTD +IYV+DS+DR R   +                 ++I ANKQD+     
Sbjct: 63  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 122
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
            +E+   L L  ++DR +QI   SA  GEG+ D M+W+
Sbjct: 123 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 160

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 53/98 (54%)
Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
           PYWR Y+ NTD +IYV+DS+DR R   +                 ++I ANKQD+     
Sbjct: 63  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 122
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
            +E+   L L  ++DR +QI   SA  GEG+ D M+W+
Sbjct: 123 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 160

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXX--XXRDAILVILANKQDMKNCMS 60
           W  YY    AII+V+DSSDR R+ ++               R   ++  ANK D+++ ++
Sbjct: 84  WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT 143
Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
             +V + L LEN+KD+ + I  + A +GEGL + +DWL + +Q
Sbjct: 144 SVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSV 61
           YWR Y+ +TD +I+VVDS+DR R+                  A L+I ANKQD+   +S 
Sbjct: 61  YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 120
Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
             +  AL L++++   ++I   SA  GE L   +DWL
Sbjct: 121 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 157

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSV 61
           YWR Y+ +TD +I+VVDS+DR R+                  A L+I ANKQD+   +S 
Sbjct: 78  YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 137
Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
             +  AL L++++   ++I   SA  GE L   +DWL
Sbjct: 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSV 61
           YWR Y+ +TD +I+VVDS+DR R+                  A L+I ANKQD+   +S 
Sbjct: 78  YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSX 137
Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
             +  AL L++++   ++I   SA  GE L   +DWL
Sbjct: 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 51/97 (52%)
Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSV 61
           YWR Y+ +TD +I+VVDS+DR R                   A L+I ANKQD+   +S 
Sbjct: 78  YWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSX 137
Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
             +  AL L++++   ++I   SA  GE L   +DWL
Sbjct: 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 50/97 (51%)
Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSV 61
           YWR Y+ +TD +I+VVDS+DR R+                  A L+I ANKQD+   +S 
Sbjct: 76  YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSS 135
Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
             +   L L++++   + I   SA  GE L   +DWL
Sbjct: 136 NAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWL 172

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAI-------LVILANKQDM 55
           W  YY N DA+I+VVDSSD  R+ +              R  +        +  ANK D 
Sbjct: 80  WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDA 139
Query: 56  KNCMSVAEVHRALGLENL-KDRTFQIFKTSAKEGEGLNDSMDWL 98
               + AE+   L L  L  D  F IF ++  +G G+++   WL
Sbjct: 140 AGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWL 183

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           W+ Y+   + I+++VD++D +R   +             +D   VIL NK D  N +S A
Sbjct: 62  WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA 121
Query: 63  EVHRALGLENLK-------DRTFQIFKTSAKEGEGLNDSMDWLS 99
           E+  ALGL N          R  ++F  S     G  ++  WLS
Sbjct: 122 ELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 165

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           W+ Y+   + I+++VD++D +R   +             +D   VIL NK D  N +S A
Sbjct: 84  WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA 143
Query: 63  EVHRALGLENLK-------DRTFQIFKTSAKEGEGLNDSMDWLS 99
           E+  ALGL N          R  ++F  S     G  ++  WLS
Sbjct: 144 ELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 49/96 (51%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           W  Y    +AI+Y++D++DR++I  S             +   +++L NK+D+ N +   
Sbjct: 84  WERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEK 143
Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
           ++   + L  ++DR    +  S KE + ++ ++ WL
Sbjct: 144 QLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 47/96 (48%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           W  Y     AI+Y+VD++D+++I  S             +   +++L NK+D+   +   
Sbjct: 84  WERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEK 143
Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
           E+   + L  ++DR    +  S KE + ++ ++ WL
Sbjct: 144 ELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 47/96 (48%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           W  Y     AI+Y+VD++D+++I  S             +   +++L NK+D+   +   
Sbjct: 93  WERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEK 152
Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
           E+   + L  ++DR    +  S KE + ++ ++ WL
Sbjct: 153 ELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
           W+ Y    + I+++VD +D  R+  S              +  ++IL NK D  + +S  
Sbjct: 96  WKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEE 155
Query: 63  EVHRALG------------LENLKDRTFQIFKTSAKEGEGLNDSMDWLS 99
           ++    G            L+ L  R  ++F  S  + +G  +   WLS
Sbjct: 156 KLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLS 204

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	5e-56
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	7e-56
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-55
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-55
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-55
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	5e-55
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	5e-55
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	6e-55
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-54
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	5e-54
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-53
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-53
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-53
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	3e-52
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	7e-50
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	4e-36
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	6e-35
2fh5_B	214	SR-beta, signal recognition particle receptor beta	3e-33
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	3e-32
1nrj_B	218	SR-beta, signal recognition particle receptor beta	4e-25
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-23
3llu_A	196	RAS-related GTP-binding protein C; structural geno	6e-15
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-09
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	3e-08
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	7e-08
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	1e-06
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-06
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	5e-06
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	2e-05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	4e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	1e-04
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	6e-04
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	7e-04
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	9e-04

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  170 bits (434), Expect = 5e-56
 Identities = 56/105 (53%), Positives = 82/105 (78%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCY+S+TDA+IYVVDS+DRDR+G++K EL A+L E+ELR ++L+I ANKQD+ +  S
Sbjct: 81  PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS 140

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            AE+   LG+ ++ +RT+ I K+S+K G+GL + MDWL   L++ 
Sbjct: 141 EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  169 bits (431), Expect = 7e-56
 Identities = 70/104 (67%), Positives = 86/104 (82%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDA+IYVVDS DRDRIGISK EL+AML+EEELR AILV+ ANKQDM+  M+
Sbjct: 66  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 125

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
            +E+  +LGL  LKDR +QIFKTSA +G GL+++M+WL   L+ 
Sbjct: 126 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  169 bits (431), Expect = 1e-55
 Identities = 28/104 (26%), Positives = 56/104 (53%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
             W  Y     AI+Y+VD++D+++I  SK EL  +L + +L+   +++L NK+D+   + 
Sbjct: 82  SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD 141

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
             E+   + L  ++DR    +  S KE + ++ ++ WL    + 
Sbjct: 142 EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  168 bits (429), Expect = 1e-55
 Identities = 52/105 (49%), Positives = 75/105 (71%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DR+R+  ++EEL+ ML E+ELRDA+L++ ANKQD+ N M+
Sbjct: 59  PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            AE+   LGL +L+ R + I  T A  G+GL + +DWLSN L+  
Sbjct: 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  168 bits (429), Expect = 2e-55
 Identities = 43/105 (40%), Positives = 64/105 (60%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWR Y+ NTD +IYV+DS+DR R   + +EL  +L+EE+L    ++I ANKQD+     
Sbjct: 75  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 134

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            +E+   L L  ++DR +QI   SA  GEG+ D M+W+   +   
Sbjct: 135 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  168 bits (427), Expect = 5e-55
 Identities = 49/106 (46%), Positives = 71/106 (66%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
             W  YY+NT+ +I VVDS+DR+RI +++EEL  ML  E+LR A L+I ANKQD+K CM+
Sbjct: 75  SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 134

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
           VAE+ + L L ++KD  + I    A  GEGL   ++W+ + L+  L
Sbjct: 135 VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL 180

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  168 bits (427), Expect = 5e-55
 Identities = 41/106 (38%), Positives = 64/106 (60%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
            YWR Y+ +TD +I+VVDS+DR R+   + EL ++L EE L  A L+I ANKQD+   +S
Sbjct: 77  SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 136

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
              +  AL L++++   ++I   SA  GE L   +DWL + +   +
Sbjct: 137 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  172 bits (437), Expect = 6e-55
 Identities = 52/105 (49%), Positives = 75/105 (71%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DR+R+  ++EEL+ ML E+ELRDA+L++ ANKQD+ N M+
Sbjct: 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 283

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            AE+   LGL +L+ R + I  T A  G+GL + +DWLSN L+  
Sbjct: 284 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  167 bits (424), Expect = 1e-54
 Identities = 48/102 (47%), Positives = 69/102 (67%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
             W  YY+NT+ +I VVDS+DR+RI +++EEL  ML  E+LR A L+I ANKQD+K CM+
Sbjct: 80  SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 139

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
           VAE+ + L L ++KD  + I    A  GEGL   ++W+ + L
Sbjct: 140 VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  165 bits (420), Expect = 5e-54
 Identities = 51/105 (48%), Positives = 78/105 (74%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYY++T A+I+VVDS+D+DR+  + +EL  ML+EEEL+DA L++ ANKQD    +S
Sbjct: 77  PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS 136

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            +EV + L L  LKDR++ I  +SA +GEG+ + +DWL + +++ 
Sbjct: 137 ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  165 bits (419), Expect = 1e-53
 Identities = 54/104 (51%), Positives = 76/104 (73%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DR+R+  S +EL  ML+E+ELRDA+L++ ANKQDM N M 
Sbjct: 88  PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP 147

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
           V+E+   LGL++L+ RT+ +  T A +G GL D +DWLS+ L K
Sbjct: 148 VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  164 bits (418), Expect = 1e-53
 Identities = 40/107 (37%), Positives = 66/107 (61%), Gaps = 2/107 (1%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL--RDAILVILANKQDMKNC 58
             W  YY    AII+V+DSSDR R+ ++KEEL  +L   ++  R   ++  ANK D+++ 
Sbjct: 82  NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141

Query: 59  MSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
           ++  +V + L LEN+KD+ + I  + A +GEGL + +DWL + +Q  
Sbjct: 142 VTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  161 bits (409), Expect = 3e-52
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 7/109 (6%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
             W+ Y+   + I+++VD++D +R   ++ EL A+    EL+D   VIL NK D  N +S
Sbjct: 82  RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 141

Query: 61  VAEVHRALGLENLK-------DRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
            AE+  ALGL N          R  ++F  S     G  ++  WLS  +
Sbjct: 142 EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  155 bits (394), Expect = 7e-50
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 12/114 (10%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
             W+ Y    + I+++VD +D +R+  SKEEL +++ +E + +  ++IL NK D    +S
Sbjct: 84  RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS 143

Query: 61  VAEVHRALG------------LENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
              +    G            L+ L  R  ++F  S  + +G  +   W++  +
Sbjct: 144 EERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score =  121 bits (304), Expect = 4e-36
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKE--ELLAMLKEE--ELRDAILVILANKQDMK 56
           P  +      D  IYV ++    R     E   ++AM           +LV+    Q   
Sbjct: 117 PQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176

Query: 57  NCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
             M    +   L L  L +  + +  T A+   G  + ++W+   ++ 
Sbjct: 177 KRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVES 223

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  117 bits (295), Expect = 6e-35
 Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 10/111 (9%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE-----EELRDAILVILANKQDM 55
              +      D I++V DS+  +R+  + E +  M +        L D  +VI  NK+D+
Sbjct: 89  ASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDL 147

Query: 56  KNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
            + + V  V   +      +  F + +  A EG+G+ +++  +S  +   +
Sbjct: 148 PDALPVEMVRAVVDP----EGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score =  114 bits (286), Expect = 3e-33
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 5/102 (4%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGIS-KEELLAMLKEEEL--RDAILVILANKQDMKNC 58
               + S+  A+++VVDS+   R      E L  +L +         L+I  NKQD+   
Sbjct: 71  LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130

Query: 59  MSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
            S   + + L  E    R  +    S  +          L  
Sbjct: 131 KSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAP--AQLGK 170

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score =  113 bits (284), Expect = 3e-32
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 5/109 (4%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKE--ELLAMLKEE--ELRDAILVILANKQDMK 56
           P  +      D  IYV ++    R     E   ++AM           +LV+    Q   
Sbjct: 202 PQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261

Query: 57  NCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
             M    +   L L  L +  + +  T A+   G  + ++W+   ++  
Sbjct: 262 KRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 92.9 bits (231), Expect = 4e-25
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 1   PYWRCYYSN----TDAIIYVVDSS-DRDRIGISKEELLAMLKEEELRDAI---LVILANK 52
                Y          +I++VDS+ D  ++  + E L+ +L   E        ++I  NK
Sbjct: 70  YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 129

Query: 53  QDMKNCMSVAEVHRALG--LENLKDRTFQIFKTSAKEGEGLNDSMDWLS 99
            ++      +++  AL   ++ + +R  +      ++    + + + L 
Sbjct: 130 SELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLD 178

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 87.9 bits (218), Expect = 2e-23
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 1   PYWRCYYSN----TDAIIYVVDSS-DRDRIGISKEELLAMLKEEELRDAI---LVILANK 52
                Y          +I++VDS+ D  ++  + E L+ +L   E        ++I  NK
Sbjct: 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 165

Query: 53  QDMKNCMSVAEVHRALG--LENLKDR 76
            ++      +++  AL   ++ + +R
Sbjct: 166 SELFTARPPSKIKDALESEIQKVIER 191

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 65.8 bits (160), Expect = 6e-15
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
             +   +  T A+IYV+D+ D     +++  +      +   D    +  +K D  +   
Sbjct: 87  FDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDH 146

Query: 61  VAEVHR--------ALGLENLKDRTFQIFKTSAKE 87
             E  R         L    L+      + TS  +
Sbjct: 147 KIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD 181

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 53.1 bits (127), Expect = 1e-09
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 8/113 (7%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL-RDAILVILANKQDMKNCM 59
                 +     +I+V D    + +   +    A+ +  +   DA + +L +K D+    
Sbjct: 72  KQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLD 131

Query: 60  SVAEVHRAL------GLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
              E+ + +                  F TS  + E L  +   +  +L  ++
Sbjct: 132 KREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIPNM 183

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 48.7 bits (116), Expect = 3e-08
 Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 10  TDAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANKQDMKNCMSVAEVHRA 67
            + IIY+ D S+    G   EE + + +E   E +D   +++ NK D+ +  ++  + + 
Sbjct: 247 GNLIIYIFDPSEHC--GFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKF 304

Query: 68  LGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
           +     K++     K SA +G G++   + +   L+  
Sbjct: 305 V-----KEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 47.5 bits (113), Expect = 7e-08
 Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 11  DAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANKQDMKNCMSVAEVHRAL 68
             I++++D S++   G++ +E + +         +  +VI  NK D  N  S++  ++ L
Sbjct: 110 GVILFIIDISEQC--GLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLL 167

Query: 69  --GLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
              + +      +    S   G G+  +       L+  
Sbjct: 168 IKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKND 206

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 20/99 (20%)

Query: 10  TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG 69
            D  I V DS+        +++++ + KE E    ++V+  NK D+          +A  
Sbjct: 114 ADCGILVTDSAP----TPYEDDVVNLFKEME-IPFVVVV--NKIDVLG-------EKAEE 159

Query: 70  LENLKDRTFQ--IFKTSAKEGEGLNDSMDWLSNALQKHL 106
           L+ L +  ++  +   SA + +G +D    +   + + L
Sbjct: 160 LKGLYESRYEAKVLLVSALQKKGFDD----IGKTISEIL 194

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
               + +  A++YV+DS D     I+   ++     +      + +L +K D  +     
Sbjct: 66  SERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKV 125

Query: 63  EVHRALG---LENLKDRT-----FQIFKTSAKE 87
           +  R +     E L +          + TS  +
Sbjct: 126 DAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD 158

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 17/96 (17%)

Query: 11  DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGL 70
           D +++V+D+S      + +E+   +   E +++   +++ NK D+   ++  E+   LG 
Sbjct: 325 DIVLFVLDASS----PLDEEDRKIL---ERIKNKRYLVVINKVDVVEKINEEEIKNKLGT 377

Query: 71  ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
           +        + K SA +GEGL      L  ++ +  
Sbjct: 378 D------RHMVKISALKGEGLEK----LEESIYRET 403

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 12/83 (14%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 11  DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGL 70
           D ++  +D++     G +  +       E+++   L+++ NK D+     +  +     +
Sbjct: 305 DLVLLTIDAAT----GWTTGDQEIY---EQVKHRPLILVMNKIDLVEKQLITSLEYPENI 357

Query: 71  ENLKDRTFQIFKTSAKEGEGLND 93
                    I  T+A + +G++ 
Sbjct: 358 TQ-------IVHTAAAQKQGIDS 373

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 16/96 (16%)

Query: 11  DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGL 70
           D ++++VD +  D   +   E+             + ++ NK D+            LG+
Sbjct: 85  DRVLFMVDGTTTD--AVDPAEIWPEFIARLPAKLPITVVRNKADITG--------ETLGM 134

Query: 71  ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
             +      + + SA+ GEG+    D L N L++ +
Sbjct: 135 SEVNGHA--LIRLSARTGEGV----DVLRNHLKQSM 164

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 13/85 (15%)

Query: 11  DAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANKQDMKNCMSVAEVHRAL 68
           D I+Y++D           ++ L  ++E       A  + +ANK D            AL
Sbjct: 314 DLILYLLDLGTER-----LDDELTEIRELKAAHPAAKFLTVANKLDRAANAD------AL 362

Query: 69  GLENLKDRTFQIFKTSAKEGEGLND 93
                     ++   SA  G+G++ 
Sbjct: 363 IRAIADGTGTEVIGISALNGDGIDT 387

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 13/100 (13%), Positives = 35/100 (35%), Gaps = 8/100 (8%)

Query: 5   CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEV 64
            + + +   + ++DS             L  +++     + ++++ NK D         +
Sbjct: 117 FFMTRSSVYMLLLDSRTDSNK----HYWLRHIEKYG-GKSPVIVVMNKIDENP---SYNI 168

Query: 65  HRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
            +    E       +  + S K G+G+      L +A+  
Sbjct: 169 EQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 35.9 bits (83), Expect = 7e-04
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 4   RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAE 63
             YY N  A + V D +            +  L E+  +D I+ ++ NK D        +
Sbjct: 70  PXYYRNAQAALVVYDVTKPQSFI-KARHWVKELHEQASKDIIIALVGNKIDXLQEGGERK 128

Query: 64  VHRALGLENLKDRTFQIFKTSAKEGEGLND 93
           V R  G +  +++    F+TSAK GE +ND
Sbjct: 129 VAREEGEKLAEEKGLLFFETSAKTGENVND 158

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 35.8 bits (83), Expect = 9e-04
 Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 10/97 (10%)

Query: 4   RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELR--DAILVILANKQDMKNCMSV 61
             + +     + V D S         + +   L   + R   + ++++    D+ +    
Sbjct: 74  PHFMTQRALYLAVYDLSKGQA---EVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQR 130

Query: 62  AEVHRALGLENLKDRTFQ-----IFKTSAKEGEGLND 93
                 +  E L  R F       F  + +E + L  
Sbjct: 131 KACMSKITKELLNKRGFPAIRDYHFVNATEESDALAK 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.88
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.88
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.88
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.88
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.88
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.87
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.87
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.87
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.86
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.86
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.86
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.86
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.85
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.85
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.85
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.85
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.82
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.81
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.81
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.8
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.8
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.79
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.79
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.79
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.79
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.78
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.78
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.78
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.78
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.77
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.77
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.77
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.77
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.77
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.76
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.76
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.76
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.76
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.76
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.76
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.76
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.76
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.76
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.76
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.76
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.76
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.75
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.75
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.75
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.75
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.75
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.75
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.74
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.74
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.74
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.74
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.74
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.74
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.74
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.74
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.74
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.74
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.74
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.74
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.74
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.74
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.74
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.74
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.74
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.74
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.74
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.74
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.74
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.73
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.73
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.73
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.73
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.73
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.73
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.72
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.72
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.72
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.72
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.72
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.72
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.71
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.71
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.71
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.7
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.7
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.7
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.7
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.7
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.7
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.69
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.69
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.69
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.69
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.69
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.68
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.68
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.68
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.67
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.67
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.66
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.64
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.64
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.63
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.41
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.61
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.61
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.6
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.58
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.57
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.54
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.53
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.52
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.52
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.51
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.5
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.49
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.48
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.48
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.47
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.45
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.43
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.43
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.41
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.41
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.4
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.39
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.39
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.38
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.38
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.36
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.36
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.35
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.34
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.34
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.33
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.33
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.29
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.27
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.25
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.24
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.24
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.24
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.24
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.22
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.2
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.17
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.16
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.16
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.15
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.15
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.14
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.13
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.12
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.1
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.08
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.04
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.04
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.0
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.99
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.99
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.97
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.97
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.94
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.93
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.93
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.93
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.9
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.86
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.86
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.85
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.85
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.79
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.78
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.77
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.75
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.74
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.74
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.74
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.74
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.73
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.71
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.67
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.64
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.61
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.57
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.55
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.55
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.55
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.55
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.55
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.53
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.46
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.45
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.44
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.32
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.23
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.11
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.1
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.0
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.9
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	97.69
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	97.5
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.47
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	97.45
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.39
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.1
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	97.04
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	95.14
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.03
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	92.52
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	91.37
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	91.34
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	86.61
3u7r_A	190	NADPH-dependent FMN reductase; alpha/beta twisted	81.77
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	80.6

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.88  E-value=3e-21  Score=113.61  Aligned_cols=105  Identities=51%  Similarity=0.905  Sum_probs=88.5

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++|..+++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.+.....++.+.++.......++++
T Consensus        88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  167 (192)
T 2b6h_A           88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYV  167 (192)
T ss_dssp             TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred             HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence            36888999999999999999999999998888888776555679999999999997766667777777644444567899


Q ss_pred             EEccccCCCChHHHHHHHHHHHhhc
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++||++|.|++++++++.+.+.+|
T Consensus       168 ~~~SA~~g~gi~~l~~~l~~~i~~q  192 (192)
T 2b6h_A          168 QATCATQGTGLYDGLDWLSHELSKR  192 (192)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHTTTC
T ss_pred             EECcCCCcCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999988654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.88  E-value=1.3e-21  Score=114.19  Aligned_cols=103  Identities=41%  Similarity=0.756  Sum_probs=84.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|..|++++|++++|+|++++.++.....++..++......+.|+++++||+|+.+.....++.+.++.......+++++
T Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (181)
T 1fzq_A           76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQ  155 (181)
T ss_dssp             HHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred             HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEE
Confidence            57889999999999999999999999888888877665456799999999999987666666776665433344568999


Q ss_pred             EccccCCCChHHHHHHHHHHHhh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++||++|.|++++|+++.+.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          156 SCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTC--
T ss_pred             EccCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.88  E-value=2.8e-21  Score=110.63  Aligned_cols=104  Identities=49%  Similarity=0.900  Sum_probs=85.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|..|++++|++++|+|++++.++.....++..+.......+.|+++|+||+|+.+.....++.+.++.......+++++
T Consensus        60 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (164)
T 1r8s_A           60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQ  139 (164)
T ss_dssp             HHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEE
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEE
Confidence            57789999999999999999999999888888877765556799999999999977666667777666444444578899


Q ss_pred             EccccCCCChHHHHHHHHHHHhhc
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++||++|.|++++++++.+.+.++
T Consensus       140 ~~Sa~~~~gi~~l~~~l~~~i~~~  163 (164)
T 1r8s_A          140 ATCATSGDGLYEGLDWLSNQLRNQ  163 (164)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHC---
T ss_pred             EcccCCCcCHHHHHHHHHHHHhhc
Confidence            999999999999999999887654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.88  E-value=4.8e-21  Score=110.23  Aligned_cols=104  Identities=66%  Similarity=1.111  Sum_probs=88.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|..|++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.+.....++.+.++.......+++++
T Consensus        67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (171)
T 1upt_A           67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIF  146 (171)
T ss_dssp             GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEE
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEE
Confidence            57889999999999999999999999888888887765446799999999999987666667777766444455678999


Q ss_pred             EccccCCCChHHHHHHHHHHHhhc
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++||++|.|++++++++.+.+.++
T Consensus       147 ~~Sa~~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          147 KTSATKGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             ECcCCCCcCHHHHHHHHHHHHhhc
Confidence            999999999999999999988764

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.88  E-value=3.4e-22  Score=118.31  Aligned_cols=103  Identities=18%  Similarity=0.284  Sum_probs=83.9

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHH---HHHhcCcC-CCCCeEEEEeeCC-CCCCcCCHHHHHHHhCCCCcCC
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEEL---LAMLKEEE-LRDAILVILANKQ-DMKNCMSVAEVHRALGLENLKD   75 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~p~ilv~nK~-D~~~~~~~~~~~~~~~~~~~~~   75 (106)
                      |+|++||.++|++|||+|.+++...+ ...++   ..++.+.. +.+.|++|++||. |++......++.+.++.... .
T Consensus       117 plWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~  194 (227)
T 3l82_B          117 PQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-N  194 (227)
T ss_dssp             CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-C
T ss_pred             HHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-C
Confidence            68999999999999999999875543 34344   34444432 4679999999995 78888888999999987665 4


Q ss_pred             CceEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         76 RTFQIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +.+.+..|||.+|+|+.+.++||.+.+..+
T Consensus       195 R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          195 HPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             SCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             CCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            789999999999999999999999887643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.87  E-value=1.2e-20  Score=110.16  Aligned_cols=105  Identities=39%  Similarity=0.701  Sum_probs=87.7

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++|..+++++|++++|+|++++.++.....++..........+.|+++|+||+|+.+.....++.+.++.......++++
T Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (186)
T 1ksh_A           77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRI  156 (186)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred             HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEE
Confidence            36788999999999999999999999988888887776444679999999999998766666777766543334467899


Q ss_pred             EEccccCCCChHHHHHHHHHHHhhc
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++||++|.|++++++++.+.+.++
T Consensus       157 ~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          157 QGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999988754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.87  E-value=1.1e-20  Score=109.93  Aligned_cols=105  Identities=49%  Similarity=0.924  Sum_probs=88.6

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++|..+++++|++++|+|++++.++.....++..........+.|+++|+||+|+.+.....++.+.++.......++++
T Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  156 (183)
T 1moz_A           77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI  156 (183)
T ss_dssp             TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE
T ss_pred             HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence            36888999999999999999999999988888888765444679999999999998766677787777654444567899


Q ss_pred             EEccccCCCChHHHHHHHHHHHhhc
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++||++|.|++++++++.+.+.++
T Consensus       157 ~~~Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          157 VASSAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             EEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             EEccCCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999999988643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.87  E-value=1.1e-20  Score=110.53  Aligned_cols=104  Identities=53%  Similarity=0.996  Sum_probs=87.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|..|++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.+.....++.+.++.......+++++
T Consensus        82 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (189)
T 2x77_A           82 YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIV  161 (189)
T ss_dssp             CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred             HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEE
Confidence            57789999999999999999999999888888887765556799999999999977666667777666444445677999


Q ss_pred             EccccCCCChHHHHHHHHHHHhhc
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++||++|.|++++++++.+.+.++
T Consensus       162 ~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          162 KSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             EccCCCccCHHHHHHHHHHHHHhc
Confidence            999999999999999999988653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=1.3e-20  Score=110.23  Aligned_cols=103  Identities=47%  Similarity=0.812  Sum_probs=86.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|..|++++|++++|+|++++.+++....++..+.......+.|+++|+||+|+.+.....++.+.++.......+++++
T Consensus        76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  155 (187)
T 1zj6_A           76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ  155 (187)
T ss_dssp             GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred             HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEE
Confidence            67889999999999999999999999998888887764446799999999999987666677777665433344578999


Q ss_pred             EccccCCCChHHHHHHHHHHHhh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++||++|.|++++++++.+.+..
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          156 ACCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHCC
T ss_pred             EccCCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999999988743

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.86  E-value=1.4e-20  Score=110.30  Aligned_cols=104  Identities=27%  Similarity=0.564  Sum_probs=85.5

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++|..|++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.......++.+.++.......++++
T Consensus        82 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  161 (188)
T 1zd9_A           82 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICC  161 (188)
T ss_dssp             TTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred             HHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeE
Confidence            36888999999999999999999999988888887765444679999999999997765666676666543334467789


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++||++|.|++++|++|.+.+.+
T Consensus       162 ~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          162 YSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999987754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.86  E-value=1.3e-20  Score=109.72  Aligned_cols=101  Identities=47%  Similarity=0.818  Sum_probs=84.3

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++|..|++++|++++|+|++++.++.....++..+.......+.|+++|+||+|+.......++.+.++.......++++
T Consensus        80 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  159 (181)
T 2h17_A           80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI  159 (181)
T ss_dssp             CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred             HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEE
Confidence            36788999999999999999999999998888888765444679999999999997766677777776544334567899


Q ss_pred             EEccccCCCChHHHHHHHHHH
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      +++||++|.|++++|++|.+.
T Consensus       160 ~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          160 QACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             EECBTTTTBTHHHHHHHHHTC
T ss_pred             EEccCCCCcCHHHHHHHHHhh
Confidence            999999999999999998754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.86  E-value=1.9e-20  Score=110.05  Aligned_cols=101  Identities=35%  Similarity=0.597  Sum_probs=83.4

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCC-------c
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLEN-------L   73 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-------~   73 (106)
                      ++|..|++++|++++|+|++++.+++....++..........+.|+++|+||+|+.+.....++.+.++...       .
T Consensus        82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  161 (190)
T 1m2o_B           82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIE  161 (190)
T ss_dssp             TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CC
T ss_pred             HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcccccccccc
Confidence            368889999999999999999999999988888877654446799999999999987666777777765332       1


Q ss_pred             CCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794         74 KDRTFQIFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      ...+++++++||++|.|++++|+++.+.
T Consensus       162 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          162 GQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             SSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            2356799999999999999999999764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.85  E-value=2.4e-20  Score=110.26  Aligned_cols=102  Identities=26%  Similarity=0.569  Sum_probs=83.9

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCC--------
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLEN--------   72 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~--------   72 (106)
                      ++|..|++++|++++|+|++++.++.....++.+++......+.|+++|+||+|+......+++.+.++...        
T Consensus        84 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  163 (198)
T 1f6b_A           84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV  163 (198)
T ss_dssp             CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCC
T ss_pred             HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCccccccccccc
Confidence            368899999999999999999999999998888887654446799999999999987666777777765321        


Q ss_pred             -c---CCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         73 -L---KDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        73 -~---~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                       .   ....+++++|||++|.|++++|+++.+.+
T Consensus       164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence             1   12467899999999999999999998654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.85  E-value=6.5e-21  Score=112.15  Aligned_cols=103  Identities=37%  Similarity=0.675  Sum_probs=84.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCC-------CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc-
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL-------RDAILVILANKQDMKNCMSVAEVHRALGLENL-   73 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-   73 (106)
                      +|..|++++|++++|+|++++.++.....++..++.....       .+.|+++|+||+|+.......++.+.++.... 
T Consensus        79 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~  158 (199)
T 4bas_A           79 LWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLM  158 (199)
T ss_dssp             GGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHH
T ss_pred             HHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhc
Confidence            6788999999999999999999999998888887665322       27899999999999876666677666653322 


Q ss_pred             CCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         74 KDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +..+++++++||++|.|++++|++|.+.+.+
T Consensus       159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          159 GDHPFVIFASNGLKGTGVHEGFSWLQETASR  189 (199)
T ss_dssp             TTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             cCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence            3467899999999999999999999988764

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.85  E-value=3.1e-21  Score=115.70  Aligned_cols=97  Identities=21%  Similarity=0.302  Sum_probs=78.4

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++++.||++++++++|||++++.+|+.+..|+..+..... .+.|++||+||+|+.+.  ....+..+...     ..++
T Consensus        77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~-----~~~~  150 (216)
T 4dkx_A           77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNV  150 (216)
T ss_dssp             GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTC
T ss_pred             hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHHH-----HhCC
Confidence            3688999999999999999999999999998877655432 56899999999998653  34555544432     2356


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .|+++||++|.||+++|+.|++.+.
T Consensus       151 ~~~e~SAktg~nV~e~F~~i~~~i~  175 (216)
T 4dkx_A          151 MFIETSAKAGYNVKQLFRRVAAALP  175 (216)
T ss_dssp             EEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred             eeEEEeCCCCcCHHHHHHHHHHHHH
Confidence            8999999999999999999998764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.85  E-value=4.3e-20  Score=108.24  Aligned_cols=103  Identities=39%  Similarity=0.744  Sum_probs=84.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCC--CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL--RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++.....++..+......  .+.|+++|+||+|+.+.....++.+.+....+...+++
T Consensus        83 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  162 (190)
T 2h57_A           83 LWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWH  162 (190)
T ss_dssp             GGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceE
Confidence            5788999999999999999998999988888887776444  57899999999999876666777776653333345789


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++++++.+.+.+
T Consensus       163 ~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          163 ICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             EEEccCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999987753

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.84  E-value=8.4e-20  Score=115.36  Aligned_cols=105  Identities=50%  Similarity=0.916  Sum_probs=91.2

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++|..|++++|++++|+|++++.++.....++...+......+.|+++|+||+|+.+.....++.+.++.......++++
T Consensus       224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  303 (329)
T 3o47_A          224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI  303 (329)
T ss_dssp             CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEE
T ss_pred             HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEE
Confidence            36788999999999999999999999999888888877655689999999999998777777888888766556678899


Q ss_pred             EEccccCCCChHHHHHHHHHHHhhc
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++||++|.|++++|++|.+.+.++
T Consensus       304 ~~vSAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          304 QATCATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999999988654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.82  E-value=1.3e-20  Score=116.27  Aligned_cols=103  Identities=19%  Similarity=0.276  Sum_probs=82.0

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHH---HHhcCcC-CCCCeEEEEeeC-CCCCCcCCHHHHHHHhCCCCcCC
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELL---AMLKEEE-LRDAILVILANK-QDMKNCMSVAEVHRALGLENLKD   75 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~p~ilv~nK-~D~~~~~~~~~~~~~~~~~~~~~   75 (106)
                      |+|++||.++|++|||+|.+++...+ ...++.   .++.+.. +.+.|++|.+|| .|++......++.+.++.... .
T Consensus       202 plWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l-~  279 (312)
T 3l2o_B          202 PQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-N  279 (312)
T ss_dssp             HHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-C
T ss_pred             HHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccC-C
Confidence            57999999999999999999886543 232222   3343322 367899999997 589888888999999987665 3


Q ss_pred             CceEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         76 RTFQIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +.+.+..|||.+|+|+.+.++||.+.+..+
T Consensus       280 r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          280 HPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             SCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             CcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            789999999999999999999999987643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.81  E-value=3.5e-19  Score=102.02  Aligned_cols=99  Identities=15%  Similarity=0.162  Sum_probs=70.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.  ....+......     ..+++
T Consensus        65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  139 (166)
T 3q72_A           65 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----VFDCK  139 (166)
T ss_dssp             --------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-----HTTCE
T ss_pred             hhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-----HhCCc
Confidence            578899999999999999999999999888888776544467999999999998643  23333333321     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++||++|.|++++|+++.+.+.++
T Consensus       140 ~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          140 FIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             EEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             EEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999988653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.81  E-value=3.7e-19  Score=104.33  Aligned_cols=96  Identities=22%  Similarity=0.345  Sum_probs=77.1

Q ss_pred             chhhhhccCCeEEEEEECC------CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSS------DRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKD   75 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~   75 (106)
                      +|+.|++++|++++|+|++      +..++..+..|+.+..  ....+.|+++|+||+|+.......++.+.+.     .
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-----~  162 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVD-----P  162 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHC-----T
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHH-----h
Confidence            5788999999999999999      4456666666665542  2235789999999999987777777777765     2


Q ss_pred             Cce-EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         76 RTF-QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        76 ~~~-~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .++ +++++||++|.|++++|+++.+.+.+
T Consensus       163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~  192 (198)
T 3t1o_A          163 EGKFPVLEAVATEGKGVFETLKEVSRLVLA  192 (198)
T ss_dssp             TCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence            455 89999999999999999999988764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.80  E-value=3.6e-19  Score=102.23  Aligned_cols=99  Identities=18%  Similarity=0.223  Sum_probs=78.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  142 (169)
T 3q85_A           68 LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCK  142 (169)
T ss_dssp             --CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred             hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH-----HcCCc
Confidence            567789999999999999999999999888888776544457999999999998642  34444443332     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++||++|.|++++|+++.+.+..+
T Consensus       143 ~~~~Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          143 HIETSAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             EEEecCccCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999988654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.80  E-value=4.4e-19  Score=103.17  Aligned_cols=100  Identities=14%  Similarity=0.191  Sum_probs=78.9

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN--CMSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|..|++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+..  .....+..+...     ..++
T Consensus        81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~  155 (183)
T 3kkq_A           81 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNI  155 (183)
T ss_dssp             SSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTC
T ss_pred             HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCC
Confidence            367889999999999999999999998888777765543346789999999999865  334444443332     1236


Q ss_pred             EEEEcccc-CCCChHHHHHHHHHHHhhc
Q psy12794         79 QIFKTSAK-EGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        79 ~~~~~sa~-~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++++||+ ++.|++++|+++.+.+.++
T Consensus       156 ~~~~~Sa~~~~~~v~~l~~~l~~~i~~q  183 (183)
T 3kkq_A          156 PYIETSAKDPPLNVDKTFHDLVRVIRQQ  183 (183)
T ss_dssp             CEEEEBCSSSCBSHHHHHHHHHHHHHHC
T ss_pred             eEEEeccCCCCCCHHHHHHHHHHHHhhC
Confidence            89999999 9999999999999988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.79  E-value=7.4e-19  Score=103.65  Aligned_cols=98  Identities=18%  Similarity=0.227  Sum_probs=77.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+...  ....+..+...     ..+++
T Consensus        89 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~-----~~~~~  163 (195)
T 3cbq_A           89 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCK  163 (195)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCE
T ss_pred             hHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH-----HhCCE
Confidence            567789999999999999999999998888877665433347899999999998643  34444444332     12468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+..
T Consensus       164 ~~e~Sa~~~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          164 HIETSAALHHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999988764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.79  E-value=9.6e-19  Score=104.55  Aligned_cols=97  Identities=18%  Similarity=0.246  Sum_probs=73.4

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++.|++.++++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.  ....+.....     ...++++
T Consensus       105 ~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a-----~~~~~~~  179 (211)
T 2g3y_A          105 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA-----VVFDCKF  179 (211)
T ss_dssp             HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEE
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHH-----HHcCCEE
Confidence            45678999999999999999999998877766554322347899999999998642  3333322221     1124689


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++||++|.|++++|+++++.+..
T Consensus       180 ~e~SAk~g~~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          180 IETSAAVQHNVKELFEGIVRQVRL  203 (211)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999988753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.79  E-value=6.8e-19  Score=102.60  Aligned_cols=99  Identities=15%  Similarity=0.212  Sum_probs=77.5

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCceE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++|..|++++|++++|+|++++.++..+..++..+.......+.|+++|+||+|+.+.. ......+...     ..+++
T Consensus        67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~  141 (189)
T 4dsu_A           67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR-----SYGIP  141 (189)
T ss_dssp             TTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH-----HHTCC
T ss_pred             HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH-----HcCCe
Confidence            36888999999999999999999999888877776664444579999999999987543 3333333221     12458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++++++.+.+.+
T Consensus       142 ~~~~Sa~~g~gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          142 FIETSAKTRQGVDDAFYTLVREIRK  166 (189)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.79  E-value=2.3e-18  Score=100.83  Aligned_cols=99  Identities=19%  Similarity=0.228  Sum_probs=78.4

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++|..|++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+... ....+..+...     ..+++
T Consensus        79 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~  153 (195)
T 1x3s_A           79 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSML  153 (195)
T ss_dssp             CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCE
T ss_pred             hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-----HcCCE
Confidence            3678899999999999999999999888887777766544457899999999998543 33444444332     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||+++.|+++++++|.+.+.+
T Consensus       154 ~~~~Sa~~~~gi~~l~~~l~~~~~~  178 (195)
T 1x3s_A          154 FIEASAKTCDGVQCAFEELVEKIIQ  178 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999988754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.78  E-value=2.1e-18  Score=99.39  Aligned_cols=97  Identities=16%  Similarity=0.222  Sum_probs=73.1

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      +..|++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.  ....+......     ..++++
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~  145 (175)
T 2nzj_A           71 QESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-----VFDCKF  145 (175)
T ss_dssp             HHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HHTSEE
T ss_pred             HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-----HcCCeE
Confidence            56788999999999999999999988877766655433357899999999998653  33333333221     124689


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++||++|.|++++|+++.+.+.+
T Consensus       146 ~~~Sa~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          146 IETSATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999988754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.78  E-value=1.2e-18  Score=99.66  Aligned_cols=98  Identities=13%  Similarity=0.164  Sum_probs=76.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++....++..+.......+.|+++|+||+|+.+.  ....+..+...    ...+.+
T Consensus        67 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~  142 (167)
T 1c1y_A           67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCA  142 (167)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCE
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCc
Confidence            578899999999999999999898888877766655333357899999999998653  23444444332    112568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++||++|.|++++++++.+.+.
T Consensus       143 ~~~~Sa~~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          143 FLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.78  E-value=2.5e-18  Score=100.56  Aligned_cols=95  Identities=9%  Similarity=0.172  Sum_probs=74.7

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC----cCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN----CMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      |++++|++++|||++++.+++.+..|+..+.......+.|+++++||+|+..    .....+..+...    ....++++
T Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~  157 (184)
T 3ihw_A           82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST----DLKRCTYY  157 (184)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH----HTTTCEEE
T ss_pred             eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH----HcCCCeEE
Confidence            7889999999999999999999888887776654335689999999999842    234444444432    11236899


Q ss_pred             EccccCCCChHHHHHHHHHHHhh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++||++|.|++++|+++.+.+.+
T Consensus       158 e~Sa~~~~gv~~lf~~l~~~i~~  180 (184)
T 3ihw_A          158 ETCATYGLNVERVFQDVAQKVVA  180 (184)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             EecCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999988754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.78  E-value=1.1e-18  Score=99.74  Aligned_cols=99  Identities=15%  Similarity=0.249  Sum_probs=78.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  142 (168)
T 1u8z_A           68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVN  142 (168)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred             HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCe
Confidence            578899999999999999999999888877777665433357899999999998643  33444444432     22468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++||++|.|++++|+++.+.+.++
T Consensus       143 ~~~~Sa~~~~gi~~l~~~l~~~i~~~  168 (168)
T 1u8z_A          143 YVETSAKTRANVDKVFFDLMREIRAR  168 (168)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999988653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.77  E-value=2.5e-18  Score=101.75  Aligned_cols=97  Identities=18%  Similarity=0.232  Sum_probs=76.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce-
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF-   78 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~-   78 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+...  ....++.+...     ..++ 
T Consensus        94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~  167 (201)
T 2hup_A           94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE-----HYDIL  167 (201)
T ss_dssp             HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCS
T ss_pred             HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH-----HcCCC
Confidence            57889999999999999999999988887776655432 256899999999998652  34445544432     2245 


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++++||++|.|++++|+++.+.+.+
T Consensus       168 ~~~~~SA~~g~gi~~l~~~l~~~i~~  193 (201)
T 2hup_A          168 CAIETSAKDSSNVEEAFLRVATELIM  193 (201)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999988764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.77  E-value=2.4e-18  Score=100.05  Aligned_cols=97  Identities=19%  Similarity=0.217  Sum_probs=70.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~  146 (183)
T 2fu5_C           73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLAL-----DYGIK  146 (183)
T ss_dssp             -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-----HHTCE
T ss_pred             hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHH-----HcCCe
Confidence            57789999999999999999999998887776655431 246899999999998653  33444444332     22468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+.+
T Consensus       147 ~~~~Sa~~~~~i~~l~~~l~~~i~~  171 (183)
T 2fu5_C          147 FMETSAKANINVENAFFTLARDIKA  171 (183)
T ss_dssp             EEECCC---CCHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.77  E-value=1.7e-18  Score=100.47  Aligned_cols=98  Identities=16%  Similarity=0.146  Sum_probs=76.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+...  ....+..+...     ..+++
T Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  144 (181)
T 3t5g_A           70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-----SWNAA  144 (181)
T ss_dssp             CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCE
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH-----HhCCc
Confidence            578899999999999999999999998888777766544457899999999998543  34444444432     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+.+
T Consensus       145 ~~~~Sa~~~~~v~~l~~~l~~~~~~  169 (181)
T 3t5g_A          145 FLESSAKENQTAVDVFRRIILEAEK  169 (181)
T ss_dssp             EEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999988764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.77  E-value=3.6e-18  Score=98.84  Aligned_cols=98  Identities=18%  Similarity=0.262  Sum_probs=77.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++..+..|+..++......+.|+++|+||+|+.+.  ....+.....     ...+++
T Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~  147 (181)
T 2fn4_A           73 MREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG-----ASHHVA  147 (181)
T ss_dssp             CHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCe
Confidence            678899999999999999999999988887777655433457899999999998653  2333333332     123568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++++++.+.+.+
T Consensus       148 ~~~~Sa~~~~gv~~l~~~l~~~~~~  172 (181)
T 2fn4_A          148 YFEASAKLRLNVDEAFEQLVRAVRK  172 (181)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999988754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.77  E-value=3.2e-18  Score=99.49  Aligned_cols=98  Identities=15%  Similarity=0.246  Sum_probs=78.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.  ....++.+...     ..+++
T Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  156 (187)
T 2a9k_A           82 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVN  156 (187)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCe
Confidence            578899999999999999999999888877777665443357899999999998653  34444544442     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||+++.|++++|++|.+.+.+
T Consensus       157 ~~~~Sa~~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          157 YVETSAKTRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999988754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.76  E-value=1e-17  Score=97.00  Aligned_cols=97  Identities=11%  Similarity=0.164  Sum_probs=71.6

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHh--cCcCCCCCeEEEEeeCCCCCC----cCCHHHHHHHhCCCCcCCCc
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAML--KEEELRDAILVILANKQDMKN----CMSVAEVHRALGLENLKDRT   77 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~p~ilv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~   77 (106)
                      ..|++++|++++|+|++++.++..+..|+..+.  ......+.|+++|+||+|+..    .....+..+...    ...+
T Consensus        67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~  142 (178)
T 2iwr_A           67 AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKR  142 (178)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSS
T ss_pred             hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcC
Confidence            357899999999999999999998887543222  222224789999999999842    234444444332    1125


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++++||++|.|++++|+++.+.+.+
T Consensus       143 ~~~~~~Sa~~~~~i~~lf~~l~~~~~~  169 (178)
T 2iwr_A          143 CSYYETXATYGLNVDRVFQEVAQKVVT  169 (178)
T ss_dssp             EEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             CeEEEEeccccCCHHHHHHHHHHHHHH
Confidence            789999999999999999999987753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.76  E-value=5e-18  Score=99.53  Aligned_cols=97  Identities=15%  Similarity=0.236  Sum_probs=75.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        86 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~  159 (191)
T 2a5j_A           86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLI  159 (191)
T ss_dssp             CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred             hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHH-----HcCCE
Confidence            57889999999999999999999988887776655432 247899999999998642  33444443332     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+.+
T Consensus       160 ~~~~Sa~~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          160 FMETSAKTACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             EEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.76  E-value=7.8e-18  Score=99.04  Aligned_cols=97  Identities=16%  Similarity=0.213  Sum_probs=72.8

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +++.|++.+|++++|||++++.+|+....|+..+.......+.|+++|+||+|+...  ....+.....     ...+++
T Consensus        73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a-----~~~~~~  147 (192)
T 2cjw_A           73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXA-----VVFDXK  147 (192)
T ss_dssp             TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCE
T ss_pred             HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHH-----HHhCCc
Confidence            567889999999999999999999988877655543222246899999999998642  2333322221     112458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++||++|.|++++|+++++.+.
T Consensus       148 ~~e~SA~~g~~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          148 FIETSAAVQHNVKELFEGIVRQVR  171 (192)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             eEEeccccCCCHHHHHHHHHHHHH
Confidence            999999999999999999998774

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.76  E-value=6.1e-18  Score=99.34  Aligned_cols=100  Identities=18%  Similarity=0.221  Sum_probs=76.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+.. ....+.|+++|+||+|+.+.  ....+..+...    ...+.+
T Consensus        91 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~----~~~~~~  165 (192)
T 2il1_A           91 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEKFAQ----QITGMR  165 (192)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----TSTTCE
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCe
Confidence            477899999999999999999999888766544332 22247899999999998643  33444444432    113568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhcC
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKHL  106 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~~  106 (106)
                      ++++||++|.|++++|+++.+.+.+++
T Consensus       166 ~~~~SA~~g~gi~~l~~~l~~~i~~~~  192 (192)
T 2il1_A          166 FCEASAKDNFNVDEIFLKLVDDILKKM  192 (192)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999887653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.76  E-value=3.2e-18  Score=101.14  Aligned_cols=98  Identities=9%  Similarity=0.103  Sum_probs=75.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+...  ....+..+...     ..+++
T Consensus        88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~  162 (201)
T 3oes_A           88 LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-----SWGAT  162 (201)
T ss_dssp             CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred             HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-----HhCCe
Confidence            578899999999999999999999999888887776544457899999999998643  23333333221     23458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+.+
T Consensus       163 ~~~~Sa~~~~~v~~l~~~l~~~i~~  187 (201)
T 3oes_A          163 FMESSARENQLTQGIFTKVIQEIAR  187 (201)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999988754

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.76  E-value=9.3e-19  Score=107.15  Aligned_cols=91  Identities=13%  Similarity=0.131  Sum_probs=67.3

Q ss_pred             cCCeEEEEEECCCc--chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794          9 NTDAIIYVVDSSDR--DRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAK   86 (106)
Q Consensus         9 ~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~   86 (106)
                      ++|++++|+|++++  .+++.+..|+..+.......+.|+++|+||+|+.......+..+...    ...+++++++||+
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~~~~~~~e~SAk  237 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL----SKKNLQVVETSAR  237 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH----TSSSCCEEECBTT
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH----hcCCCeEEEEECC
Confidence            89999999999998  89998888777665432224689999999999864322233333322    1135689999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q psy12794         87 EGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        87 ~~~~v~~~~~~l~~~~~  103 (106)
                      +|.|++++|+++.+.+.
T Consensus       238 ~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          238 SNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            99999999999998764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.76  E-value=5.9e-18  Score=100.89  Aligned_cols=98  Identities=12%  Similarity=0.237  Sum_probs=76.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+...  ....+..+...     ..+++
T Consensus       100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~  174 (217)
T 2f7s_A          100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KYGIP  174 (217)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCC
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH-----HCCCc
Confidence            477899999999999999999999888877766554433357899999999998653  23344444332     22468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||+++.|++++++++.+.+.+
T Consensus       175 ~~~~Sa~~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          175 YFETSAATGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             EEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.76  E-value=2e-18  Score=99.02  Aligned_cols=98  Identities=20%  Similarity=0.270  Sum_probs=75.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      +|..+++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ....+..+...     ..++++
T Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~  141 (170)
T 1g16_A           68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPF  141 (170)
T ss_dssp             CCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCE
T ss_pred             hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeE
Confidence            57889999999999999999988888877776655432 246899999999998543 23333333321     124589


Q ss_pred             EEccccCCCChHHHHHHHHHHHhhc
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++||++|.|++++++++.+.+.++
T Consensus       142 ~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          142 IESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999988654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.76  E-value=1.1e-17  Score=98.07  Aligned_cols=99  Identities=18%  Similarity=0.250  Sum_probs=76.0

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+...  ....+..+...     ..++
T Consensus        80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~  153 (196)
T 3tkl_A           80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-----SLGI  153 (196)
T ss_dssp             TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTC
T ss_pred             hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCC
Confidence            367889999999999999999999988887766554432 247899999999998643  23333333322     2345


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++++||++|.|++++|+++.+.+.++
T Consensus       154 ~~~~~Sa~~g~gv~~l~~~l~~~i~~~  180 (196)
T 3tkl_A          154 PFLETSAKNATNVEQSFMTMAAEIKKR  180 (196)
T ss_dssp             CEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            899999999999999999999988654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.76  E-value=6e-18  Score=99.89  Aligned_cols=98  Identities=15%  Similarity=0.246  Sum_probs=77.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.  ....++.+...     ..+++
T Consensus        78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  152 (206)
T 2bov_A           78 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVN  152 (206)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred             HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCe
Confidence            577899999999999999999999988887777665433357899999999998653  33444444432     12458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+..
T Consensus       153 ~~~~Sa~~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          153 YVETSAKTRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             EEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.76  E-value=5.6e-18  Score=98.96  Aligned_cols=98  Identities=13%  Similarity=0.240  Sum_probs=76.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.  ....++.+...     ..+++
T Consensus        86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  160 (195)
T 3bc1_A           86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-----KYGIP  160 (195)
T ss_dssp             HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCC
T ss_pred             HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCC
Confidence            467889999999999999999999888877776655433357899999999998652  33344443332     12458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||+++.|+++++++|.+.+.+
T Consensus       161 ~~~~Sa~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          161 YFETSAANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.76  E-value=7.5e-18  Score=98.77  Aligned_cols=98  Identities=17%  Similarity=0.276  Sum_probs=75.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.  ....+......     ..+++
T Consensus        88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  161 (191)
T 3dz8_A           88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAE-----QLGFD  161 (191)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred             HHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCe
Confidence            5778999999999999999999998888776665442 2357899999999998643  23333333221     22458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++||++|.|++++|+++.+.+.++
T Consensus       162 ~~~~Sa~~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          162 FFEASAKENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999988654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.75  E-value=3.4e-18  Score=100.58  Aligned_cols=98  Identities=15%  Similarity=0.201  Sum_probs=76.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+...  ....+..+...     ..+++
T Consensus        91 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~  165 (196)
T 2atv_A           91 QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACA  165 (196)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSE
T ss_pred             chhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCe
Confidence            578899999999999999999999888877666554333357899999999998652  33344433332     12468


Q ss_pred             EEEccccCCC-ChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGE-GLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~-~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|. |++++|+++.+.+.+
T Consensus       166 ~~~~Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          166 FYECSACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             EEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred             EEEECCCcCCcCHHHHHHHHHHHHHh
Confidence            9999999999 999999999988754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.75  E-value=1.8e-17  Score=98.13  Aligned_cols=97  Identities=18%  Similarity=0.257  Sum_probs=75.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  146 (206)
T 2bcg_Y           73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMP  146 (206)
T ss_dssp             CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCC
T ss_pred             HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCe
Confidence            57889999999999999999999998887776654432 246899999999998653  23344443332     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+.+
T Consensus       147 ~~~~Sa~~g~gi~~l~~~l~~~i~~  171 (206)
T 2bcg_Y          147 FLETSALDSTNVEDAFLTMARQIKE  171 (206)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999988764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.75  E-value=1.7e-17  Score=97.22  Aligned_cols=98  Identities=12%  Similarity=0.225  Sum_probs=76.8

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+...  ....+......     ..++
T Consensus        89 ~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~  162 (193)
T 2oil_A           89 AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAE-----NNGL  162 (193)
T ss_dssp             TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTC
T ss_pred             hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHH-----HcCC
Confidence            367889999999999999999999888887776665432 257899999999998653  23444444332     2356


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++++||++|.|++++++++.+.+.+
T Consensus       163 ~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          163 LFLETSALDSTNVELAFETVLKEIFA  188 (193)
T ss_dssp             EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999987754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.75  E-value=1.4e-17  Score=96.23  Aligned_cols=97  Identities=18%  Similarity=0.274  Sum_probs=75.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  153 (179)
T 1z0f_A           80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLL  153 (179)
T ss_dssp             HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred             hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCE
Confidence            47789999999999999999989888877766554432 246899999999998642  33444444432     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+.+
T Consensus       154 ~~~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          154 FLEASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999988754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.75  E-value=1.6e-17  Score=97.11  Aligned_cols=98  Identities=16%  Similarity=0.308  Sum_probs=75.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        87 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  160 (189)
T 2gf9_A           87 ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLAD-----DLGFE  160 (189)
T ss_dssp             SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred             hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCe
Confidence            5788999999999999999998998887776655442 2247899999999998653  23333333322     12458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++||++|.|++++++++.+.+.++
T Consensus       161 ~~~~Sa~~g~gi~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          161 FFEASAKENINVKQVFERLVDVICEK  186 (189)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999887654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.75  E-value=5.5e-18  Score=96.60  Aligned_cols=98  Identities=14%  Similarity=0.207  Sum_probs=75.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      +|..|++++|++++|+|++++.++.....|+..+.......+.|+++++||+|+.+. ....+..+...     ..++++
T Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~  141 (166)
T 2ce2_X           67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-----SYGIPY  141 (166)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCE
T ss_pred             HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-----HcCCeE
Confidence            467899999999999999999888888777766554433347899999999998653 23333333321     124589


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++||++|.|++++++++.+.+.+
T Consensus       142 ~~~Sa~~~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          142 IETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999998765

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.74  E-value=1.7e-17  Score=96.17  Aligned_cols=96  Identities=16%  Similarity=0.257  Sum_probs=75.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+.  ....++.+...     ..+++
T Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  150 (181)
T 2efe_B           77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ-----ENGLF  150 (181)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCE
T ss_pred             hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHH-----HcCCE
Confidence            57789999999999999999999988887776665432 247899999999998643  33444444432     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++||++|.|++++++++.+.+.
T Consensus       151 ~~~~Sa~~g~gi~~l~~~l~~~~~  174 (181)
T 2efe_B          151 FMETSAKTATNVKEIFYEIARRLP  174 (181)
T ss_dssp             EEECCSSSCTTHHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.74  E-value=7.3e-18  Score=98.96  Aligned_cols=98  Identities=13%  Similarity=0.156  Sum_probs=72.7

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCC
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDR   76 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~   76 (106)
                      ++|..|++++|++++|+|++++.++..+...+...+... ..+.|+++|+||+|+...    ....+..+...     ..
T Consensus        86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~  159 (194)
T 3reg_A           86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KL  159 (194)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HH
T ss_pred             HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hc
Confidence            367889999999999999999999988743333333321 246899999999998642    33444443332     12


Q ss_pred             ceE-EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         77 TFQ-IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        77 ~~~-~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++. ++++||++|.|++++|+++.+.+.+
T Consensus       160 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (194)
T 3reg_A          160 GCVAYIEASSVAKIGLNEVFEKSVDCIFS  188 (194)
T ss_dssp             TCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence            334 9999999999999999999998764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.74  E-value=9e-18  Score=98.22  Aligned_cols=98  Identities=17%  Similarity=0.262  Sum_probs=73.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        86 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~  160 (189)
T 1z06_A           86 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMP  160 (189)
T ss_dssp             THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCC
T ss_pred             hhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-----HcCCE
Confidence            678899999999999999999999888887777665433457899999999998643  23333333322     23458


Q ss_pred             EEEccccCC---CChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEG---EGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~---~~v~~~~~~l~~~~~~  104 (106)
                      ++++||+++   .|++++|.+|.+.+.+
T Consensus       161 ~~~~Sa~~~~~~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          161 LFETSAKNPNDNDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             EEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred             EEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence            999999999   9999999999887753

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.74  E-value=1.4e-17  Score=99.37  Aligned_cols=97  Identities=23%  Similarity=0.237  Sum_probs=75.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.  .......+..     ...+++
T Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~  150 (218)
T 4djt_A           77 LKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVL-----KGKNYE  150 (218)
T ss_dssp             CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHT-----TTCCCE
T ss_pred             HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCc
Confidence            67889999999999999999999888877666554332 145899999999998653  2333444433     334678


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+.+
T Consensus       151 ~~~~Sa~~g~gv~~l~~~l~~~~~~  175 (218)
T 4djt_A          151 YFEISAKTAHNFGLPFLHLARIFTG  175 (218)
T ss_dssp             EEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999998764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.74  E-value=1.6e-17  Score=98.16  Aligned_cols=97  Identities=18%  Similarity=0.257  Sum_probs=75.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+...  ....+..+...     ..+++
T Consensus        90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~  163 (200)
T 2o52_A           90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELM  163 (200)
T ss_dssp             CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCE
Confidence            57889999999999999999999988887776654422 146899999999998642  33344444332     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+.+
T Consensus       164 ~~~~SA~~g~gi~~l~~~l~~~i~~  188 (200)
T 2o52_A          164 FLETSALTGENVEEAFLKCARTILN  188 (200)
T ss_dssp             EEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987754

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.74  E-value=5.8e-18  Score=101.09  Aligned_cols=97  Identities=15%  Similarity=0.117  Sum_probs=73.7

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHH-HHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHH
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGI-SKEELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVH   65 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~   65 (106)
                      ++|..|++++|++++|||++++.++.. ...|+..+...  ..+.|+++|+||+|+.+.              ....+..
T Consensus        90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  167 (214)
T 3q3j_B           90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC  167 (214)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred             HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence            368889999999999999999999998 45555554433  147899999999998642              3333333


Q ss_pred             HHhCCCCcCCCce-EEEEccccCCCC-hHHHHHHHHHHHhh
Q psy12794         66 RALGLENLKDRTF-QIFKTSAKEGEG-LNDSMDWLSNALQK  104 (106)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~~sa~~~~~-v~~~~~~l~~~~~~  104 (106)
                      +...     ..++ +++++||++|.| ++++|+++.+.+..
T Consensus       168 ~~~~-----~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~  203 (214)
T 3q3j_B          168 AIAK-----QLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN  203 (214)
T ss_dssp             HHHH-----HHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHH-----HcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence            3322     2245 899999999998 99999999988754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.74  E-value=7.1e-18  Score=96.65  Aligned_cols=97  Identities=22%  Similarity=0.301  Sum_probs=74.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-----CCHHHHHHHhCCCCcCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-----MSVAEVHRALGLENLKDR   76 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~   76 (106)
                      +|..|++++|++++|+|++++.++.....|+..+.... ..+.|+++++||+|+...     .......+...     ..
T Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~  141 (170)
T 1ek0_A           68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE-----EK  141 (170)
T ss_dssp             GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-----HH
T ss_pred             hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHH-----Hc
Confidence            57889999999999999999999988887776665432 247899999999998643     22233333221     23


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++++++||++|.|++++|+++.+.+.+
T Consensus       142 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (170)
T 1ek0_A          142 GLLFFETSAKTGENVNDVFLGIGEKIPL  169 (170)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHTTSCC
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            4689999999999999999999887654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=1.3e-17  Score=96.58  Aligned_cols=97  Identities=18%  Similarity=0.294  Sum_probs=72.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+...  ....+..+...     ..+++
T Consensus        76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  149 (180)
T 2g6b_A           76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLP  149 (180)
T ss_dssp             ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCC
T ss_pred             HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCe
Confidence            577889999999999999999888888777766554322 56899999999998643  23333333321     12458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++++++.+.+.+
T Consensus       150 ~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          150 FMETSAKTGLNVDLAFTAIAKELKR  174 (180)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.74  E-value=1.1e-17  Score=96.87  Aligned_cols=99  Identities=18%  Similarity=0.198  Sum_probs=73.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc---CCCCCeEEEEeeCCCCCCc---CCHHHHHHHhCCCCcCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE---ELRDAILVILANKQDMKNC---MSVAEVHRALGLENLKD   75 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~~~---~~~~~~~~~~~~~~~~~   75 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+....   ...+.|+++|+||+|+...   ....+..+...    ..
T Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~  149 (182)
T 1ky3_A           74 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SL  149 (182)
T ss_dssp             ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HT
T ss_pred             hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hc
Confidence            57788999999999999999999888877766655422   1246899999999998532   23444444332    12


Q ss_pred             CceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         76 RTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .+.+++++||++|.|++++|+++.+.+.+
T Consensus       150 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          150 GDIPLFLTSAKNAINVDTAFEEIARSALQ  178 (182)
T ss_dssp             TSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            35689999999999999999999987754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.74  E-value=1.2e-17  Score=95.65  Aligned_cols=96  Identities=20%  Similarity=0.303  Sum_probs=75.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+...  ....+..+...     ..+++
T Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  144 (170)
T 1r2q_A           71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLL  144 (170)
T ss_dssp             GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred             hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHH-----HcCCe
Confidence            57889999999999999999999988887776665432 247899999999998642  33344444332     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++||++|.|++++++++.+.+.
T Consensus       145 ~~~~Sa~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          145 FMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999988764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.74  E-value=1.1e-17  Score=98.85  Aligned_cols=98  Identities=17%  Similarity=0.192  Sum_probs=67.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC--CCCCeEEEEeeCCCCCC---cCCHHHHHHHhCCCCcCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE--LRDAILVILANKQDMKN---CMSVAEVHRALGLENLKDR   76 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~---~~~~~~~~~~~~~~~~~~~   76 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+.....  ..+.|+++|+||+|+.+   .....+..+...     ..
T Consensus        89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~  163 (208)
T 2yc2_C           89 QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-----TN  163 (208)
T ss_dssp             HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-----HT
T ss_pred             HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-----Hc
Confidence            467889999999999999999999988887776655322  24789999999999865   233444444432     23


Q ss_pred             ceEEEEccccC-CCChHHHHHHHHHHHhh
Q psy12794         77 TFQIFKTSAKE-GEGLNDSMDWLSNALQK  104 (106)
Q Consensus        77 ~~~~~~~sa~~-~~~v~~~~~~l~~~~~~  104 (106)
                      +++++++||++ |.|++++|+++.+.+.+
T Consensus       164 ~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          164 TLDFFDVSANPPGKDADAPFLSIATTFYR  192 (208)
T ss_dssp             TCEEEECCC-------CHHHHHHHHHHHH
T ss_pred             CCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence            46899999999 99999999999987653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=1.7e-17  Score=97.40  Aligned_cols=97  Identities=16%  Similarity=0.222  Sum_probs=76.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN--CMSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+  .....++.+...     ..+++
T Consensus        88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~  161 (192)
T 2fg5_A           88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAE-----SIGAI  161 (192)
T ss_dssp             GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TTTCE
T ss_pred             hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCE
Confidence            5778999999999999999999999888777665443 224689999999999864  234455555443     23578


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++++++.+.+.+
T Consensus       162 ~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          162 VVETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            9999999999999999999987643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.74  E-value=1.9e-17  Score=95.80  Aligned_cols=96  Identities=21%  Similarity=0.315  Sum_probs=74.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.+.  ....+......     ..+++
T Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  146 (181)
T 3tw8_B           74 ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAG-----QMGIQ  146 (181)
T ss_dssp             CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCC
T ss_pred             hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHH-----HcCCe
Confidence            5788999999999999999999999888777766543  246899999999998653  23333333221     12458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++++++.+.+.+
T Consensus       147 ~~~~Sa~~~~gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          147 LFETSAKENVNVEEMFNCITELVLR  171 (181)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=1.1e-17  Score=99.11  Aligned_cols=97  Identities=21%  Similarity=0.218  Sum_probs=74.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~  164 (201)
T 2ew1_A           91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMY  164 (201)
T ss_dssp             HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCC
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCE
Confidence            47789999999999999999999988877776554321 246899999999998642  33344433321     22468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+.+
T Consensus       165 ~~~~Sa~~g~gv~~l~~~l~~~i~~  189 (201)
T 2ew1_A          165 YLETSAKESDNVEKLFLDLACRLIS  189 (201)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.74  E-value=2.7e-17  Score=94.99  Aligned_cols=100  Identities=17%  Similarity=0.204  Sum_probs=76.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc---CCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE---ELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~   77 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+....   ...+.|+++|+||+|+... ....++.+...    ...+
T Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~  147 (177)
T 1wms_A           72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGD  147 (177)
T ss_dssp             HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTC
T ss_pred             hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCC
Confidence            47789999999999999999988888777666554321   1246899999999998642 34445554443    1235


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      .+++++||++|.|++++|+++.+.+.++
T Consensus       148 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          148 YPYFETSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            6899999999999999999999987653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.74  E-value=7.8e-18  Score=96.63  Aligned_cols=97  Identities=23%  Similarity=0.274  Sum_probs=73.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  144 (170)
T 1z08_A           71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAK  144 (170)
T ss_dssp             --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred             hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCe
Confidence            56778999999999999999999988887766544321 146899999999998652  34444444432     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++++++.+.+.+
T Consensus       145 ~~~~Sa~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          145 HYHTSAKQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999988764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.74  E-value=9.1e-18  Score=96.11  Aligned_cols=97  Identities=18%  Similarity=0.275  Sum_probs=75.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++....|+..+....  .+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  142 (168)
T 1z2a_A           70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLR  142 (168)
T ss_dssp             CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCE
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCe
Confidence            57789999999999999999988888877776665432  46899999999998642  23444443332     22468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++||+++.|++++++++.+.+.++
T Consensus       143 ~~~~Sa~~~~~i~~l~~~l~~~~~~~  168 (168)
T 1z2a_A          143 FYRTSVKEDLNVSEVFKYLAEKHLQK  168 (168)
T ss_dssp             EEECBTTTTBSSHHHHHHHHHHHHC-
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999887653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.8e-17  Score=99.36  Aligned_cols=99  Identities=16%  Similarity=0.212  Sum_probs=73.9

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|..|++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+...  ....+..+...     ..++
T Consensus        77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~  150 (223)
T 3cpj_B           77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ-----ENQL  150 (223)
T ss_dssp             CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHH-----HTTC
T ss_pred             hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCC
Confidence            367889999999999999999999998887776654432 246899999999998642  33444444332     2346


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++++||+++.|++++|+++.+.+.++
T Consensus       151 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~  177 (223)
T 3cpj_B          151 LFTETSALNSENVDKAFEELINTIYQK  177 (223)
T ss_dssp             EEEECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            899999999999999999999887643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.74  E-value=2.1e-17  Score=97.11  Aligned_cols=96  Identities=23%  Similarity=0.343  Sum_probs=76.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-cCCHHHHHHHhCCCCcCCCceEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN-CMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      +|..|++++|++++|+|++++.++.....|+..+...   .+.|+++|+||+|... .....++.+.+.     ..++++
T Consensus       109 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~  180 (208)
T 3clv_A          109 IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNKFQVDILEVQKYAQ-----DNNLLF  180 (208)
T ss_dssp             THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-CCSCHHHHHHHHH-----HTTCEE
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcccccCCHHHHHHHHH-----HcCCcE
Confidence            5788999999999999999999998888777776554   3489999999999432 234455555543     235699


Q ss_pred             EEccccCCCChHHHHHHHHHHHhhc
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++||++|.|++++++++.+.+.++
T Consensus       181 ~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          181 IQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999887654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.74  E-value=2.1e-17  Score=96.20  Aligned_cols=97  Identities=18%  Similarity=0.276  Sum_probs=74.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+...  ....+..+...     ..+++
T Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  148 (186)
T 2bme_A           75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQ-----ENELM  148 (186)
T ss_dssp             HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred             HHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCE
Confidence            47789999999999999999999988887765544321 257899999999998642  33344444332     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++.+.+.+
T Consensus       149 ~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (186)
T 2bme_A          149 FLETSALTGENVEEAFVQCARKILN  173 (186)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.74  E-value=2.7e-17  Score=95.06  Aligned_cols=99  Identities=14%  Similarity=0.162  Sum_probs=73.0

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC-CCCCe-EEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCC
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE-LRDAI-LVILANKQDMKNC--MSVAEVHRALGLENLKDR   76 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p-~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~   76 (106)
                      ++|..|++++|++++|+|++++.+++.+..|+..+..... ..+.| +++|+||+|+.+.  ....+..+...     ..
T Consensus        71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~  145 (178)
T 2hxs_A           71 KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----EN  145 (178)
T ss_dssp             TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HH
T ss_pred             chhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----Hc
Confidence            3688999999999999999999898887766655443110 01344 8999999998642  33344433322     12


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++++++||++|.|++++|+++.+.+.+
T Consensus       146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          146 GFSSHFVSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             TCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred             CCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            4689999999999999999999988754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.73  E-value=2.8e-17  Score=97.03  Aligned_cols=97  Identities=16%  Similarity=0.283  Sum_probs=74.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  146 (203)
T 1zbd_A           73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFE  146 (203)
T ss_dssp             HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-----HHTCE
T ss_pred             hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHH-----HCCCe
Confidence            4778999999999999999999998888776665442 2246899999999998653  23333333322     12458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|++|.+.+.+
T Consensus       147 ~~~~Sa~~~~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          147 FFEASAKDNINVKQTFERLVDVICE  171 (203)
T ss_dssp             EEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987754

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.73  E-value=7.2e-18  Score=107.35  Aligned_cols=104  Identities=18%  Similarity=0.278  Sum_probs=81.5

Q ss_pred             CchhhhhccCCeEEEEEECCC----------cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-------------
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSD----------RDRIGISKEELLAMLKEEELRDAILVILANKQDMKN-------------   57 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-------------   57 (106)
                      ++|.+||++++++|||+|+++          ..++.+...++..+..+....+.|++|++||+|+..             
T Consensus       208 ~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp  287 (353)
T 1cip_A          208 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYP  287 (353)
T ss_dssp             GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCT
T ss_pred             HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhccc
Confidence            479999999999999999998          578999998998888776667899999999999842             


Q ss_pred             ----cCCHHHHHHHhC-----CCCc-CCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         58 ----CMSVAEVHRALG-----LENL-KDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        58 ----~~~~~~~~~~~~-----~~~~-~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                          .....+..+.+.     .... ...++.+++|||+++.||.++|.++.+.+.+
T Consensus       288 ~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          288 EYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             TCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence                123444444332     1100 1356899999999999999999999987754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.73  E-value=1.3e-17  Score=97.53  Aligned_cols=98  Identities=15%  Similarity=0.219  Sum_probs=71.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      +|..|++++|++++|+|++++.++.++..|+..+.......+.|+++|+||+|+... ....++.+...     ..++++
T Consensus        85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~  159 (190)
T 3con_A           85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-----SYGIPF  159 (190)
T ss_dssp             -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCE
T ss_pred             HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-----HcCCeE
Confidence            577899999999999999999888888776665544322346899999999998653 33344443332     124589


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++||++|.|++++++++.+.+.+
T Consensus       160 ~~~Sa~~~~gi~~l~~~l~~~~~~  183 (190)
T 3con_A          160 IETSAKTRQGVEDAFYTLVREIRQ  183 (190)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999987754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.73  E-value=1.3e-17  Score=98.55  Aligned_cols=99  Identities=18%  Similarity=0.231  Sum_probs=75.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc---CCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE---ELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~   77 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+....   ...+.|+++|+||+|+... ....+..+...    ...+
T Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~  148 (207)
T 1vg8_A           73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNN  148 (207)
T ss_dssp             SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTS
T ss_pred             hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCC
Confidence            57789999999999999999988888877766554422   1236899999999998643 33444444332    1245


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++++||++|.|+++++++|.+.+.+
T Consensus       149 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          149 IPYFETSAKEAINVEQAFQTIARNALK  175 (207)
T ss_dssp             CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999987753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.73  E-value=3.1e-17  Score=96.21  Aligned_cols=96  Identities=14%  Similarity=0.125  Sum_probs=71.3

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHH
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVH   65 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~   65 (106)
                      ++|..|++++|++++|+|++++.++.... .|+..+...  ..+.|+++|+||+|+...              ....+..
T Consensus        81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  158 (194)
T 2atx_A           81 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ  158 (194)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred             HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHH
Confidence            36788999999999999999999998886 455444332  137899999999998652              2222222


Q ss_pred             HHhCCCCcCCCce-EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         66 RALGLENLKDRTF-QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +...     ..+. +++++||++|.|++++|+++.+.+.
T Consensus       159 ~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          159 KLAK-----EIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             HHHH-----HHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHH-----HcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            2221     1123 7999999999999999999998764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.73  E-value=1.4e-17  Score=98.78  Aligned_cols=97  Identities=21%  Similarity=0.274  Sum_probs=73.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ....+..+...     ..++++
T Consensus        85 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~  158 (213)
T 3cph_A           85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPF  158 (213)
T ss_dssp             CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHH-----HHTCCE
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHH-----HcCCEE
Confidence            57889999999999999999988888777766654432 246899999999998533 23333333221     123589


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++||++|.|++++++++.+.+.+
T Consensus       159 ~~~Sa~~~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          159 IESSAKNDDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             EECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999987754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.72  E-value=3e-17  Score=96.73  Aligned_cols=96  Identities=11%  Similarity=0.081  Sum_probs=71.3

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHH
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVH   65 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~   65 (106)
                      ++|..|++++|++++|+|++++.++..+. .|+..+....  .+.|+++|+||+|+...              ....+..
T Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  160 (201)
T 2q3h_A           83 KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAK  160 (201)
T ss_dssp             SSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred             HHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHH
Confidence            36888999999999999999999998886 4554443321  37899999999998642              1222222


Q ss_pred             HHhCCCCcCCCc-eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         66 RALGLENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        66 ~~~~~~~~~~~~-~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ....     ..+ .+++++||++|.|++++|+++.+.+.
T Consensus       161 ~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  194 (201)
T 2q3h_A          161 LLAE-----EIKAASYIECSALTQKNLKEVFDAAIVAGI  194 (201)
T ss_dssp             HHHH-----HHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHH-----hcCCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            2221     112 38999999999999999999998775

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.72  E-value=1.6e-17  Score=98.00  Aligned_cols=98  Identities=15%  Similarity=0.242  Sum_probs=71.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--------cCCHHHHHHHhCCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN--------CMSVAEVHRALGLENL   73 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--------~~~~~~~~~~~~~~~~   73 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+        .....+..+...    
T Consensus        93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~----  167 (199)
T 2p5s_A           93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM----  167 (199)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH----
T ss_pred             hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHH----
Confidence            4678899999999999999999998887766554332 124689999999999852        122233332221    


Q ss_pred             CCCceEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         74 KDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                       ..+++++++||++|.|++++|.++.+.+.++
T Consensus       168 -~~~~~~~~~SA~~g~gv~el~~~l~~~i~~~  198 (199)
T 2p5s_A          168 -TYGALFCETSAKDGSNIVEAVLHLAREVKKR  198 (199)
T ss_dssp             -HHTCEEEECCTTTCTTHHHHHHHHHHHHTC-
T ss_pred             -HcCCeEEEeeCCCCCCHHHHHHHHHHHHHhh
Confidence             2246899999999999999999999988654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.72  E-value=5.9e-18  Score=101.27  Aligned_cols=96  Identities=19%  Similarity=0.241  Sum_probs=74.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +|..|++++|++++|+|++++.++..+..|+..+....  .+.|+++|+||+|+.+.....+..+..     ...+++++
T Consensus        80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~  152 (221)
T 3gj0_A           80 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYY  152 (221)
T ss_dssp             CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGCCHH-----HHHTCEEE
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHHHHH-----HHcCCEEE
Confidence            57889999999999999999999998887777766542  478999999999986543211111111     22346899


Q ss_pred             EccccCCCChHHHHHHHHHHHhh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++||++|.|++++|+++.+.+..
T Consensus       153 ~~Sa~~~~gi~~l~~~l~~~l~~  175 (221)
T 3gj0_A          153 DISAKSNYNFEKPFLWLARKLIG  175 (221)
T ss_dssp             ECBGGGTBTTTHHHHHHHHHHHT
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999988754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.72  E-value=9e-18  Score=95.88  Aligned_cols=98  Identities=14%  Similarity=0.166  Sum_probs=75.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++....++..+.......+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  141 (167)
T 1kao_A           67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCP  141 (167)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSC
T ss_pred             HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCC
Confidence            577899999999999999999999888877777665433357999999999998643  23333333321     12458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++++++.+.+.+
T Consensus       142 ~~~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          142 FMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCcCHHHHHHHHHHHHhh
Confidence            9999999999999999999988753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.72  E-value=1.6e-17  Score=98.50  Aligned_cols=97  Identities=11%  Similarity=0.134  Sum_probs=69.3

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--------------HHHHHH
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS--------------VAEVHR   66 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--------------~~~~~~   66 (106)
                      ++|..|++++|++++|+|++++.++.+....+...+.... .+.|+++|+||+|+.+...              ..+...
T Consensus        93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  171 (204)
T 4gzl_A           93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA  171 (204)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred             HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence            3678899999999999999999999988733333333222 4789999999999865321              112211


Q ss_pred             HhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ...    .....+++++||++|.|++++|+++.+.+
T Consensus       172 ~~~----~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          172 MAK----EIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             HHH----HTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             HHH----hcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            111    11224799999999999999999998754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.72  E-value=6.7e-17  Score=92.62  Aligned_cols=96  Identities=18%  Similarity=0.198  Sum_probs=73.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~  144 (170)
T 1z0j_A           71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAI  144 (170)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred             ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHH-----HcCCE
Confidence            5678899999999999999998888887766555432 2357899999999998643  23333333332     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++||++|.|++++++++.+.+.
T Consensus       145 ~~~~Sa~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          145 FVETSAKNAININELFIEISRRIP  168 (170)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHh
Confidence            999999999999999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.71  E-value=7.2e-17  Score=95.33  Aligned_cols=96  Identities=18%  Similarity=0.210  Sum_probs=69.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--------------CHHHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--------------SVAEVHRA   67 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------------~~~~~~~~   67 (106)
                      +|..|++++|++++|+|++++.++......+...+... ..+.|+++|+||+|+.+..              ...+..+.
T Consensus        89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  167 (201)
T 2gco_A           89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM  167 (201)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred             HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHH
Confidence            67889999999999999999989988843333333321 1478999999999986531              11122221


Q ss_pred             hCCCCcCCCce-EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         68 LGLENLKDRTF-QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        68 ~~~~~~~~~~~-~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ..     ..+. +++++||++|.|++++++++.+.+.
T Consensus       168 ~~-----~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          168 AN-----RISAFGYLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             HH-----HTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HH-----hCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            11     1123 8999999999999999999998764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.71  E-value=3.5e-17  Score=104.52  Aligned_cols=104  Identities=16%  Similarity=0.294  Sum_probs=79.4

Q ss_pred             CchhhhhccCCeEEEEEECCC----------cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-------------
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSD----------RDRIGISKEELLAMLKEEELRDAILVILANKQDMKN-------------   57 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-------------   57 (106)
                      ++|.+||++++++|||+|+++          ..++.+...++.....+....+.|+++++||+|+.+             
T Consensus       216 ~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp  295 (362)
T 1zcb_A          216 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFL  295 (362)
T ss_dssp             --CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCT
T ss_pred             hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCc
Confidence            479999999999999999998          789999998898888775557899999999999752             


Q ss_pred             ----c-CCHHHHHHHh-----CCCCcC-CCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         58 ----C-MSVAEVHRAL-----GLENLK-DRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        58 ----~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                          . ....+..+.+     ...... ..++.++++||+++.||.++|.++.+.+.+
T Consensus       296 ~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          296 EFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             TCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence                1 3344544433     111111 346789999999999999999999987753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.71  E-value=1.8e-17  Score=97.03  Aligned_cols=98  Identities=19%  Similarity=0.173  Sum_probs=74.6

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC--CCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE--LRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      +..|++++|++++|||++++.+++.+..|+..+.....  ..+.|+++|+||+|+...  ....+..+...     ..++
T Consensus        85 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~  159 (187)
T 3c5c_A           85 CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-----RFGC  159 (187)
T ss_dssp             THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTC
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-----HcCC
Confidence            35689999999999999999999998877766554311  146899999999998642  33444444332     2246


Q ss_pred             EEEEccc-cCCCChHHHHHHHHHHHhhc
Q psy12794         79 QIFKTSA-KEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        79 ~~~~~sa-~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++++|| ++|.|++++|+++.+.+.++
T Consensus       160 ~~~e~Sa~~~g~gv~~lf~~l~~~i~~~  187 (187)
T 3c5c_A          160 LFFEVSACLDFEHVQHVFHEAVREARRE  187 (187)
T ss_dssp             EEEECCSSSCSHHHHHHHHHHHHHHHC-
T ss_pred             cEEEEeecCccccHHHHHHHHHHHHhhC
Confidence            8999999 89999999999999988653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.70  E-value=2.3e-17  Score=98.00  Aligned_cols=97  Identities=8%  Similarity=0.077  Sum_probs=70.6

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcC----------CHHHHHHHhC
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCM----------SVAEVHRALG   69 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----------~~~~~~~~~~   69 (106)
                      ++|..|++++|++++|+|++++.++..+. .|+..+... . .+.|+++|+||+|+....          ...+..+...
T Consensus        72 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~  149 (212)
T 2j0v_A           72 RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF-A-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK  149 (212)
T ss_dssp             C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-C-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred             HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence            36788999999999999999999998876 455444332 1 378999999999986431          2333333221


Q ss_pred             CCCcCCCc-eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         70 LENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        70 ~~~~~~~~-~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                           ..+ .+++++||++|.|++++|+++.+.+.+
T Consensus       150 -----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (212)
T 2j0v_A          150 -----QIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ  180 (212)
T ss_dssp             -----HHTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             -----HcCCceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence                 112 389999999999999999999987753

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=1.3e-16  Score=94.63  Aligned_cols=102  Identities=19%  Similarity=0.234  Sum_probs=69.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc--------
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL--------   73 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--------   73 (106)
                      +|..|++++|++++|+|++++.++......+...+... ..+.|+++|+||+|+.......+....+.....        
T Consensus        89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  167 (207)
T 2fv8_A           89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF-CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAM  167 (207)
T ss_dssp             TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHH
Confidence            57889999999999999999988888743333333321 147899999999998643211111111110000        


Q ss_pred             -CCCce-EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         74 -KDRTF-QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        74 -~~~~~-~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                       ...+. +++++||++|.|++++++++.+.+.+
T Consensus       168 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          168 AVRIQAYDYLECSAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             HHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence             01123 89999999999999999999988754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.70  E-value=3.1e-17  Score=95.09  Aligned_cols=96  Identities=10%  Similarity=0.063  Sum_probs=70.7

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcC------------CHHHHHHH
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCM------------SVAEVHRA   67 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~   67 (106)
                      ++|..+++++|++++|+|++++.+++.+. .|+..+... . .+.|+++|+||+|+.+..            ...+..+.
T Consensus        71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~  148 (182)
T 3bwd_D           71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-A-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL  148 (182)
T ss_dssp             TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-C-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH
T ss_pred             hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH
Confidence            36788999999999999999999998887 344443332 1 368999999999985432            22222222


Q ss_pred             hCCCCcCCCc-eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         68 LGLENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        68 ~~~~~~~~~~-~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ..     ..+ .+++++||++|.|++++|+++.+.+.
T Consensus       149 ~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          149 KK-----LIGAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             HH-----HHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             HH-----HcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            21     113 38999999999999999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.70  E-value=4.3e-17  Score=95.03  Aligned_cols=98  Identities=13%  Similarity=0.110  Sum_probs=71.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHH-HHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGIS-KEELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVHR   66 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~~   66 (106)
                      +|..|++++|++++|+|++++.++..+ ..|+..+...  ..+.|+++|+||+|+...              ....+..+
T Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  148 (184)
T 1m7b_A           71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN  148 (184)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred             hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH
Confidence            578899999999999999999999887 4444443322  146899999999998632              22233333


Q ss_pred             HhCCCCcCCCceEEEEcccc-CCCChHHHHHHHHHHHhhc
Q psy12794         67 ALGLENLKDRTFQIFKTSAK-EGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        67 ~~~~~~~~~~~~~~~~~sa~-~~~~v~~~~~~l~~~~~~~  105 (106)
                      ...    .....+++++||+ ++.|++++|+.+.+.+.++
T Consensus       149 ~~~----~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~k  184 (184)
T 1m7b_A          149 MAK----QIGAATYIECSALQSENSVRDIFHVATLACVNK  184 (184)
T ss_dssp             HHH----HHTCSEEEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred             HHH----HcCCcEEEEeeecCCCcCHHHHHHHHHHHHhcC
Confidence            221    0112589999999 6899999999999887653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.70  E-value=3.2e-17  Score=94.67  Aligned_cols=97  Identities=20%  Similarity=0.274  Sum_probs=74.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  152 (179)
T 2y8e_A           79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-----ELNVM  152 (179)
T ss_dssp             GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHH-----HcCCe
Confidence            57788999999999999999988888887776655432 146899999999998643  23334333332     12468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++++++.+.+.+
T Consensus       153 ~~~~Sa~~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          153 FIETSAKAGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999987653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.70  E-value=6.8e-17  Score=93.86  Aligned_cols=97  Identities=11%  Similarity=0.089  Sum_probs=70.8

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--------------CHHHHH
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCM--------------SVAEVH   65 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------------~~~~~~   65 (106)
                      ++|..|++++|++++|+|++++.++.... .|+..+... . .+.|+++|+||+|+....              ...+..
T Consensus        68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  145 (186)
T 1mh1_A           68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL  145 (186)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-S-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred             HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHh-C-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHH
Confidence            36788999999999999999999998886 444444332 1 378999999999986431              112222


Q ss_pred             HHhCCCCcCCCc-eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         66 RALGLENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        66 ~~~~~~~~~~~~-~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +...     ..+ .+++++||++|.|++++|+++.+.+..
T Consensus       146 ~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          146 AMAK-----EIGAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             HHHH-----HTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             HHHH-----hcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence            2211     123 389999999999999999999988753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.69  E-value=2.1e-17  Score=97.07  Aligned_cols=98  Identities=15%  Similarity=0.150  Sum_probs=72.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC-CCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE-LRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.++.....++..+..... ..+.|+++|+||+|+... ....+......     ..+++
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~  146 (199)
T 2gf0_A           72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-----EWKCA  146 (199)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-----HHTCE
T ss_pred             HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-----HhCCe
Confidence            577899999999999999998888877765544333111 136899999999998653 23333333221     12458


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++++++.+.+..
T Consensus       147 ~~~~Sa~~~~gi~~l~~~l~~~~~~  171 (199)
T 2gf0_A          147 FMETSAKMNYNVKELFQELLTLETR  171 (199)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999987653

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.69  E-value=7.9e-17  Score=96.07  Aligned_cols=96  Identities=6%  Similarity=0.080  Sum_probs=65.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--------------CHHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCM--------------SVAEVHR   66 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------------~~~~~~~   66 (106)
                      +|..|++++|++++|+|++++.+++.+. .|+..+...  ..+.|+++|+||+|+....              ...+..+
T Consensus        98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  175 (214)
T 2j1l_A           98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQE  175 (214)
T ss_dssp             -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHH
Confidence            5778899999999999999999998886 444443322  1468999999999986532              1122222


Q ss_pred             HhCCCCcCCCce-EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         67 ALGLENLKDRTF-QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        67 ~~~~~~~~~~~~-~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ...     ..+. +++++||++|.|++++|+++.+.+.+
T Consensus       176 ~~~-----~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~  209 (214)
T 2j1l_A          176 MAR-----SVGAVAYLECSARLHDNVHAVFQEAAEVALS  209 (214)
T ss_dssp             HHH-----HTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHH-----hcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            221     1233 89999999999999999999988754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.69  E-value=1.7e-17  Score=105.70  Aligned_cols=104  Identities=18%  Similarity=0.339  Sum_probs=77.4

Q ss_pred             CchhhhhccCCeEEEEEECC----------CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----C-------
Q psy12794          1 PYWRCYYSNTDAIIYVVDSS----------DRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----M-------   59 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~-------   59 (106)
                      ++|.+||++++++|+|+|++          +..++.+...++..+.......+.|+++++||+|+.+.    .       
T Consensus       198 ~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~  277 (354)
T 2xtz_A          198 RKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEW  277 (354)
T ss_dssp             GGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGG
T ss_pred             HHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhccccccccccc
Confidence            47999999999999999998          77899999988988877655567999999999997421    0       


Q ss_pred             ------------CHHHHHHHhCC-----------CCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         60 ------------SVAEVHRALGL-----------ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        60 ------------~~~~~~~~~~~-----------~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                                  ...+..+.+..           .......+.+++|||++++||.++|.++.+.+.+
T Consensus       278 fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~  345 (354)
T 2xtz_A          278 FRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR  345 (354)
T ss_dssp             GTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence                        01222222110           0000234677999999999999999999987753

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.69  E-value=4.4e-16  Score=92.59  Aligned_cols=100  Identities=25%  Similarity=0.348  Sum_probs=66.8

Q ss_pred             chhhhhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcC--cCCCCCeEEEEeeCCCCCCcCCHHHHHHHhC---------
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKE--EELRDAILVILANKQDMKNCMSVAEVHRALG---------   69 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~---------   69 (106)
                      +|..|++++|++++|+|+++.. ++.....++...+..  ....+.|+++|+||+|+.......++.+.+.         
T Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~  150 (214)
T 2fh5_B           71 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVT  150 (214)
T ss_dssp             HHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhcc
Confidence            5788999999999999998743 455555555554432  1124689999999999976544332222111         


Q ss_pred             --------------CCCcC---------C--CceEEEEccccCC------CChHHHHHHHHHH
Q psy12794         70 --------------LENLK---------D--RTFQIFKTSAKEG------EGLNDSMDWLSNA  101 (106)
Q Consensus        70 --------------~~~~~---------~--~~~~~~~~sa~~~------~~v~~~~~~l~~~  101 (106)
                                    .....         .  ..+++++|||++|      .|++++|++|.+.
T Consensus       151 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          151 RSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             CC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             chhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                          00000         1  1678999999999      9999999999875

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.69  E-value=8.3e-17  Score=95.59  Aligned_cols=98  Identities=13%  Similarity=0.110  Sum_probs=71.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHH-HHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGIS-KEELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVHR   66 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~~   66 (106)
                      +|..|++++|++++|+|++++.++..+ ..|+..+...  ..+.|+++|+||+|+...              ....+..+
T Consensus        92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  169 (205)
T 1gwn_A           92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN  169 (205)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred             HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence            577899999999999999999999887 4454444332  146899999999998632              22233333


Q ss_pred             HhCCCCcCCCceEEEEcccc-CCCChHHHHHHHHHHHhhc
Q psy12794         67 ALGLENLKDRTFQIFKTSAK-EGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        67 ~~~~~~~~~~~~~~~~~sa~-~~~~v~~~~~~l~~~~~~~  105 (106)
                      ...    .....+++++||+ ++.|++++|+.+.+.+.++
T Consensus       170 ~~~----~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~~  205 (205)
T 1gwn_A          170 MAK----QIGAATYIECSALQSENSVRDIFHVATLACVNK  205 (205)
T ss_dssp             HHH----HHTCSEEEECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHH----HcCCCEEEEeeeccCCcCHHHHHHHHHHHHhhC
Confidence            221    0012589999999 6899999999999887653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.68  E-value=1.4e-16  Score=99.66  Aligned_cols=90  Identities=24%  Similarity=0.286  Sum_probs=67.9

Q ss_pred             CchhhhhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH---HHHHHHhCCCCcCCC
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV---AEVHRALGLENLKDR   76 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~   76 (106)
                      ++|+.||+++|++++|+|++++. ++..+..|+.....    .++|+++|+||+|+.+....   .+..+.+.     ..
T Consensus        76 ~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~-----~~  146 (301)
T 1u0l_A           76 LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS-----GL  146 (301)
T ss_dssp             EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT-----TT
T ss_pred             eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh-----hh
Confidence            36889999999999999999886 67777777665432    47899999999998653221   12223332     11


Q ss_pred             ceEEEEccccCCCChHHHHHHHHH
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~  100 (106)
                       ++++++||++|.|++++|..+..
T Consensus       147 -~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          147 -YPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             -SCEEECCTTTCTTHHHHHHHHSS
T ss_pred             -CcEEEEECCCCcCHHHHHHHhcC
Confidence             68999999999999999987653

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.68  E-value=2e-16  Score=99.70  Aligned_cols=104  Identities=15%  Similarity=0.256  Sum_probs=80.5

Q ss_pred             CchhhhhccCCeEEEEEECC----------CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-------------
Q psy12794          1 PYWRCYYSNTDAIIYVVDSS----------DRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN-------------   57 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-------------   57 (106)
                      ++|.+||++++++|+|+|++          +..++.+...++.....+....+.|+++++||+|+.+             
T Consensus       182 ~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp  261 (327)
T 3ohm_A          182 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFP  261 (327)
T ss_dssp             TTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCT
T ss_pred             HHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhch
Confidence            57999999999999999654          6778999888898888876667899999999999743             


Q ss_pred             -----cCCHHHHHHHhC-----CCCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         58 -----CMSVAEVHRALG-----LENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        58 -----~~~~~~~~~~~~-----~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                           ..+.++..+.+.     .......++.++++||+++.||..+|..+.+.+.+
T Consensus       262 ~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~  318 (327)
T 3ohm_A          262 EYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  318 (327)
T ss_dssp             TCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence                 123344433321     11113456889999999999999999999988764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.68  E-value=6.3e-17  Score=95.26  Aligned_cols=96  Identities=17%  Similarity=0.226  Sum_probs=67.5

Q ss_pred             hhhhccCCeEEEEEECCCc--chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC----CHHHH----HHHhCCCCc
Q psy12794          4 RCYYSNTDAIIYVVDSSDR--DRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM----SVAEV----HRALGLENL   73 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----~~~~~----~~~~~~~~~   73 (106)
                      ..|++++|++++|+|++++  .++..+..|+.+....  ..+.|+++|+||+|+....    ...++    .+.+.....
T Consensus        90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~  167 (196)
T 3llu_A           90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL  167 (196)
T ss_dssp             HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence            7899999999999999987  5556665556554322  2478999999999976421    11112    111211111


Q ss_pred             CCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         74 KDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ...+++++++||++ .|++++|+.+++.+
T Consensus       168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            24578999999999 99999999998865

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.67  E-value=1.8e-17  Score=97.73  Aligned_cols=98  Identities=18%  Similarity=0.244  Sum_probs=65.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|++++|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+....  ...+..+..     ...+++
T Consensus        98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~  171 (199)
T 3l0i_B           98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFA-----DSLGIP  171 (199)
T ss_dssp             CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHH-----HTTTCC
T ss_pred             HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHH-----HHcCCe
Confidence            5778999999999999999999999988877666443 22478999999999986431  111111111     123467


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++||++|.|++++|++|.+.+.++
T Consensus       172 ~~~vSA~~g~gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          172 FLETSAKNATNVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             BCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999887654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=8.2e-17  Score=92.34  Aligned_cols=98  Identities=17%  Similarity=0.166  Sum_probs=71.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc-CCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE-ELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      +|..+++++|++++|+|++++.+++....++..+.... ...+.|+++|+||+|+.+.  ....+......     ..++
T Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~-----~~~~  141 (172)
T 2erx_A           67 MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-----TWKC  141 (172)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTC
T ss_pred             HHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCC
Confidence            47788999999999999999988887776665444321 1246899999999998643  23333332221     1245


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++++||++|.|++++++++.+.+.+
T Consensus       142 ~~~~~Sa~~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          142 AFMETSAKLNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             eEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            89999999999999999999987653

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.66  E-value=1.8e-16  Score=102.19  Aligned_cols=104  Identities=19%  Similarity=0.239  Sum_probs=77.9

Q ss_pred             CchhhhhccCCeEEEEEECCC----------cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-----C------
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSD----------RDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-----M------   59 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~------   59 (106)
                      ++|.+||++++++|+|+|+++          ..++.+...|+..+.......+.|++|++||+|+...     .      
T Consensus       232 ~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~  311 (402)
T 1azs_C          232 RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDY  311 (402)
T ss_dssp             GGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGT
T ss_pred             hhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhc
Confidence            479999999999999999998          8899999999988887655568999999999997321     0      


Q ss_pred             ---------------------CHHHHHHHh----C-C---CCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         60 ---------------------SVAEVHRAL----G-L---ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        60 ---------------------~~~~~~~~~----~-~---~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                                           ...+....+    . .   .......+.++++||+++.||.++|..+.+.+.+
T Consensus       312 fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~  385 (402)
T 1azs_C          312 FPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  385 (402)
T ss_dssp             CGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence                                 011222211    0 0   0001135788999999999999999999887653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.64  E-value=7.9e-16  Score=90.14  Aligned_cols=93  Identities=15%  Similarity=0.187  Sum_probs=68.4

Q ss_pred             chhhhhccC---CeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcC
Q psy12794          2 YWRCYYSNT---DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLK   74 (106)
Q Consensus         2 ~~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~   74 (106)
                      +|..|++++   |++++|+|++++.++.+..  +...+..   .+.|+++|+||+|+.+....    .++.+.+.    .
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~  165 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN----I  165 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT----C
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHc----c
Confidence            366777777   9999999999877776543  2233332   46899999999998764333    23444343    2


Q ss_pred             CCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         75 DRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        75 ~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ..+.+++++||++|.|++++++++.+.+.
T Consensus       166 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          166 DPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            34679999999999999999999998774

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.64  E-value=7.6e-16  Score=96.67  Aligned_cols=97  Identities=11%  Similarity=0.112  Sum_probs=70.6

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHH
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVH   65 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~   65 (106)
                      ++|..|++++|++++|+|++++.++..+. .|+..+... . .++|+++|+||+|+...              ....+..
T Consensus       218 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  295 (332)
T 2wkq_A          218 RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL  295 (332)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-C-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred             HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhh-C-CCCcEEEEEEchhcccccchhhhccccccccccHHHHH
Confidence            35788999999999999999999998876 344333322 1 37899999999998542              1122222


Q ss_pred             HHhCCCCcCCCc-eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         66 RALGLENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        66 ~~~~~~~~~~~~-~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +...     ..+ .+++++||++|.|++++|+++.+.+..
T Consensus       296 ~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          296 AMAK-----EIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             HHHH-----HTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             HHHH-----HcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence            2221     123 389999999999999999999988754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.63  E-value=3e-16  Score=91.52  Aligned_cols=97  Identities=13%  Similarity=0.154  Sum_probs=70.7

Q ss_pred             chhhhhccCCeEEEEEECCCc-chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH----HHHHHhCCCCcCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDR-DRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA----EVHRALGLENLKDR   76 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~   76 (106)
                      +|+.|+++++++++|+|++++ .+++.+..|+.++....  .+.|+++|+||+|+.+.....    +..+.+.    ...
T Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~  145 (184)
T 2zej_A           72 THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELL----NKR  145 (184)
T ss_dssp             TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTT----TCT
T ss_pred             hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHH----Hhc
Confidence            577889999999999999987 47888877776654431  368999999999986532211    1222332    222


Q ss_pred             ce----EEEEccccCCC-ChHHHHHHHHHHHhh
Q psy12794         77 TF----QIFKTSAKEGE-GLNDSMDWLSNALQK  104 (106)
Q Consensus        77 ~~----~~~~~sa~~~~-~v~~~~~~l~~~~~~  104 (106)
                      ++    +++++||+++. |++++++.+.+.+.+
T Consensus       146 ~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          146 GFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             TSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             CCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence            33    49999999997 999999999887753

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.41  E-value=3.6e-17  Score=96.73  Aligned_cols=100  Identities=14%  Similarity=0.188  Sum_probs=68.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH---------HHHHHhCCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA---------EVHRALGLEN   72 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~---------~~~~~~~~~~   72 (106)
                      +|..|++++|++++|+|++++.++......+...+.... .+.|+++|+||+|+.+.....         .+........
T Consensus        94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (204)
T 3th5_A           94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM  172 (204)
Confidence            577889999999999999999888887633333333211 278999999999986432110         1111111111


Q ss_pred             cCCCce-EEEEccccCCCChHHHHHHHHHHH
Q psy12794         73 LKDRTF-QIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        73 ~~~~~~-~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ....+. +++++||++|.|++++|+++.+.+
T Consensus       173 ~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          173 AKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            122344 899999999999999999998754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.61  E-value=1.2e-15  Score=89.22  Aligned_cols=94  Identities=20%  Similarity=0.300  Sum_probs=64.5

Q ss_pred             chhhhhccC---CeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHH----HHHHhCCCCcC
Q psy12794          2 YWRCYYSNT---DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAE----VHRALGLENLK   74 (106)
Q Consensus         2 ~~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~~~~~~~~   74 (106)
                      +|..|++++   |++++|+|.+++.+.....  +...+..   .+.|+++|+||+|+.+......    +.+.+.    .
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~  164 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS----K  164 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHH----S
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHh----h
Confidence            356677776   8999999998764443322  2223332   3689999999999865433322    233332    2


Q ss_pred             CCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         75 DRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        75 ~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ...++++++||++|.|++++|+++.+.+.+
T Consensus       165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          165 YGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             SCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             cCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            234689999999999999999999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.61  E-value=1.8e-14  Score=83.07  Aligned_cols=97  Identities=21%  Similarity=0.150  Sum_probs=66.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCC--cCCC--c
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLEN--LKDR--T   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~--~~~~--~   77 (106)
                      +|..+++++|++++|+|++++....... .+... ..   .+.|+++|+||+|+... ...++.+.+....  ....  .
T Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~l~~~-~~---~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~  144 (178)
T 2lkc_A           71 MRARGAQVTDIVILVVAADDGVMPQTVE-AINHA-KA---ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGD  144 (178)
T ss_dssp             SCCSSCCCCCEEEEEEETTCCCCHHHHH-HHHHH-GG---GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSS
T ss_pred             HHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHH-Hh---CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCc
Confidence            4667889999999999998754333222 23222 22   46899999999998753 3344444443211  1122  2


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++++||++|.|++++++++.+.+..
T Consensus       145 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~  171 (178)
T 2lkc_A          145 TIFCKLSAKTKEGLDHLLEMILLVSEM  171 (178)
T ss_dssp             EEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence            789999999999999999999987753

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.60  E-value=5e-16  Score=98.30  Aligned_cols=103  Identities=17%  Similarity=0.264  Sum_probs=78.2

Q ss_pred             CchhhhhccCCeEEEEEECC----------CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc------------
Q psy12794          1 PYWRCYYSNTDAIIYVVDSS----------DRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC------------   58 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------   58 (106)
                      ++|.+||++++++|||+|++          +..++.+...++.....+....+.|+++++||+|+...            
T Consensus       176 ~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp  255 (340)
T 4fid_A          176 KXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFP  255 (340)
T ss_dssp             HHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCT
T ss_pred             ccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhh
Confidence            37999999999999999998          77889999989988888766678999999999997431            


Q ss_pred             -----CCHHHHHH----Hh-------CCCCcCC-----------CceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         59 -----MSVAEVHR----AL-------GLENLKD-----------RTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        59 -----~~~~~~~~----~~-------~~~~~~~-----------~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                           ...++..+    .+       .......           ..+.++++||+++.||..+|..+.+.+.
T Consensus       256 ~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il  327 (340)
T 4fid_A          256 EYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIM  327 (340)
T ss_dssp             TCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHH
Confidence                 12223222    22       1110111           3588999999999999999999988764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.58  E-value=2.9e-15  Score=90.07  Aligned_cols=96  Identities=16%  Similarity=0.178  Sum_probs=64.1

Q ss_pred             hhhhccCCeEEEEEECCCcchHH--HHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHH---HHHHHhCCCCcCCC
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIG--ISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVA---EVHRALGLENLKDR   76 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~---~~~~~~~~~~~~~~   76 (106)
                      ..++..+|++++|+|++++.++.  ....++..+...  ..+.|+++|+||+|+.+.  ....   ...+....   ...
T Consensus       103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~  177 (228)
T 2qu8_A          103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN---VKN  177 (228)
T ss_dssp             HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH---CCS
T ss_pred             HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh---cCC
Confidence            45678899999999999887654  222334443322  137899999999998653  2221   12222210   001


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .++++++||++|.|++++|+++.+.+.+
T Consensus       178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          178 PIKFSSFSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             CEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CceEEEEecccCCCHHHHHHHHHHHHHH
Confidence            2789999999999999999999987753

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.57  E-value=5e-15  Score=93.27  Aligned_cols=99  Identities=16%  Similarity=0.186  Sum_probs=65.5

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC--cCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCcC--
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANKQDMKNCMS----VAEVHRALGLENLK--   74 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~~--   74 (106)
                      ++.||++++++|+|||++++  +.+...++.+++..  ....+.|+++++||+|+.....    ..++.+..+....+  
T Consensus        66 ~~~yyr~a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~  143 (331)
T 3r7w_B           66 SERLFKSVGALVYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG  143 (331)
T ss_dssp             HHHHHTTCSEEEEECCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred             hhhhccCCCEEEEEEECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc
Confidence            48899999999999999987  33333333332211  0124789999999999865321    12333322211112  


Q ss_pred             --CCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         75 --DRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        75 --~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                        ..++.|+++||++ .||.++|..+++.+.+
T Consensus       144 ~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          144 LDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             CSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred             ccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence              2578999999998 5999999999876543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.54  E-value=3.8e-15  Score=86.15  Aligned_cols=87  Identities=16%  Similarity=0.244  Sum_probs=62.4

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      .+++++|++++|+|++++.++.. ..|+..+... ...++|+++|+||+|+.+...     +     .....+.+++++|
T Consensus        79 ~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-----~-----~~~~~~~~~~~~S  146 (172)
T 2gj8_A           79 QEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL-----G-----MSEVNGHALIRLS  146 (172)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC-----E-----EEEETTEEEEECC
T ss_pred             HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh-----h-----hhhccCCceEEEe
Confidence            36899999999999998877653 3344443332 124689999999999853210     0     0112356899999


Q ss_pred             ccCCCChHHHHHHHHHHHh
Q psy12794         85 AKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~~  103 (106)
                      |++|.|++++|+++.+.+.
T Consensus       147 A~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          147 ARTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             TTTCTTHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHhh
Confidence            9999999999999988764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.53  E-value=1.1e-14  Score=82.75  Aligned_cols=87  Identities=15%  Similarity=0.203  Sum_probs=61.6

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCce-EEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTF-QIF   81 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~   81 (106)
                      |..+++++|++++|+|.+++.+..+  .++.+.+..   .+.|+++|+||+|+.+..  .+..+..      ..+. +++
T Consensus        73 ~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~~~~------~~~~~~~~  139 (161)
T 2dyk_A           73 VDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE--LYLGPLY------GLGFGDPI  139 (161)
T ss_dssp             HHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCGGGG------GGSSCSCE
T ss_pred             HHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch--HhHHHHH------hCCCCCeE
Confidence            5668899999999999987644332  233344433   468999999999986531  1111111      1233 689


Q ss_pred             EccccCCCChHHHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++||++|.|++++++++.+.+
T Consensus       140 ~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          140 PTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHC
T ss_pred             EEecccCCChHHHHHHHHHhC
Confidence            999999999999999998765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.52  E-value=1.7e-14  Score=90.28  Aligned_cols=89  Identities=25%  Similarity=0.267  Sum_probs=65.7

Q ss_pred             chhhhhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCcCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLENLKDRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~   77 (106)
                      +.+.|++++|++++|+|++++. ++..+..|+.....    .++|+++|+||+|+.+...   ..+..+.+.     ..+
T Consensus        72 l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~-----~~g  142 (302)
T 2yv5_A           72 LIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYR-----DAG  142 (302)
T ss_dssp             EETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHH-----HTT
T ss_pred             HhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHH-----HCC
Confidence            3456899999999999999885 78877777654332    5789999999999864321   222333332     124


Q ss_pred             eEEEEccccCCCChHHHHHHHH
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLS   99 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~   99 (106)
                      ++++++||++|.|++++++.+.
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHhhcc
Confidence            6899999999999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.52  E-value=3.3e-14  Score=89.11  Aligned_cols=95  Identities=16%  Similarity=0.167  Sum_probs=68.0

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC-CcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK-NCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +..+++++|++++|+|++++.++.+...|+.. +..   .+.|+++|+||+|+. ......+..+.+...  .....+++
T Consensus        86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~-l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~--~~~~~~i~  159 (308)
T 3iev_A           86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNF-IKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK--HPELTEIV  159 (308)
T ss_dssp             HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHH-TGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH--CTTCCCEE
T ss_pred             HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHH-HHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHh--ccCCCeEE
Confidence            56788999999999999988777776543433 333   468999999999986 332222222222100  01235799


Q ss_pred             EccccCCCChHHHHHHHHHHHh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++||++|.|++++++++.+.+.
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSC
T ss_pred             EEeCCCCCCHHHHHHHHHHhCc
Confidence            9999999999999999998774

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.51  E-value=3.3e-15  Score=85.72  Aligned_cols=86  Identities=22%  Similarity=0.334  Sum_probs=61.2

Q ss_pred             hhhhhc--cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCC
Q psy12794          3 WRCYYS--NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDR   76 (106)
Q Consensus         3 ~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~   76 (106)
                      ...|++  ++|++++|+|+++..+   ...|+.....    .+.|+++|+||+|+...    ....++.+.+        
T Consensus        73 ~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------  137 (165)
T 2wji_A           73 ARDYIINEKPDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------  137 (165)
T ss_dssp             HHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------
T ss_pred             HHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHh--------
Confidence            356665  8999999999987433   3334444433    36899999999997532    1223333333        


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++++++||++|.|++++|+++.+.+.
T Consensus       138 ~~~~~~~SA~~~~~v~~l~~~l~~~~~  164 (165)
T 2wji_A          138 GVKVVPLSAAKKMGIEELKKAISIAVK  164 (165)
T ss_dssp             TSCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            347999999999999999999998763

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.50  E-value=2.2e-14  Score=85.60  Aligned_cols=97  Identities=13%  Similarity=0.093  Sum_probs=63.5

Q ss_pred             hhhhhcc---CCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCC--c
Q psy12794          3 WRCYYSN---TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLEN--L   73 (106)
Q Consensus         3 ~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~--~   73 (106)
                      +..|+++   +|++++|+|.+++.+..+  ..+...+..   .++|+++|+||+|+......    .++.+.+....  .
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  180 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG  180 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence            4456666   777999999987544322  223344443   46899999999998653221    11222221000  0


Q ss_pred             CCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         74 KDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .....+++++||++|.|+++++++|.+.+..
T Consensus       181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          181 YAGKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             cCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence            1246799999999999999999999988754

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.49  E-value=1.1e-13  Score=87.80  Aligned_cols=97  Identities=24%  Similarity=0.277  Sum_probs=69.8

Q ss_pred             chhhhhc---cCCeEEEEEECCC---cchHHHHHHHHHHHhcCc-CCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCc
Q psy12794          2 YWRCYYS---NTDAIIYVVDSSD---RDRIGISKEELLAMLKEE-ELRDAILVILANKQDMKNCM-SVAEVHRALGLENL   73 (106)
Q Consensus         2 ~~~~~~~---~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~   73 (106)
                      ++..|++   .+|++++|+|+++   +.++++...+..++.... ...++|+++|+||+|+.... ...++.+.+..   
T Consensus       226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~---  302 (342)
T 1lnz_A          226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD---  302 (342)
T ss_dssp             THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS---
T ss_pred             hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc---
Confidence            3445544   4999999999998   677887776666654432 23579999999999986532 11233333321   


Q ss_pred             CCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         74 KDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                         ..+++++||++++|+++++++|.+.+.+
T Consensus       303 ---~~~v~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          303 ---DYPVFPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             ---CCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             ---CCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence               1578999999999999999999988754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.48  E-value=6.7e-13  Score=78.13  Aligned_cols=97  Identities=12%  Similarity=0.221  Sum_probs=72.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..++++++++++|+|.++..++.....|+..+... ...+.|+++++||+|+...  ....+......     ..++.
T Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~  143 (199)
T 2f9l_A           70 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNNLS  143 (199)
T ss_dssp             CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred             hhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCe
Confidence            5677899999999999999988888776666544322 1246899999999998642  23333333332     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||+++.|++++++++.+.+.+
T Consensus       144 ~~d~Sal~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          144 FIETSALDSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            8999999999999999999987753

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.48  E-value=1.9e-13  Score=85.62  Aligned_cols=96  Identities=16%  Similarity=0.058  Sum_probs=66.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHH---HHHhcCcCCCCCeEEEEeeCCCCCCcCCH--------HHHHHHhCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEEL---LAMLKEEELRDAILVILANKQDMKNCMSV--------AEVHRALGL   70 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------~~~~~~~~~   70 (106)
                      +|..|++++|++++|+|++++.+++++..|.   ..+...  ..+.|+++++||+|+.+....        .++.+....
T Consensus        73 ~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~  150 (307)
T 3r7w_A           73 QKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE  150 (307)
T ss_dssp             THHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHH
Confidence            5788899999999999999999998876543   232221  246899999999998652111        222222221


Q ss_pred             CCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         71 ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        71 ~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      .  ....++++++||++ .|+.+++..+...+
T Consensus       151 ~--g~~~~~~~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          151 F--GFPNLIGFPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             T--TCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred             c--CCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence            0  01137999999999 89999988887654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.47  E-value=1.3e-14  Score=84.44  Aligned_cols=102  Identities=11%  Similarity=0.006  Sum_probs=62.8

Q ss_pred             chhhhhcc-CCeEEEEEECCCcchHHHHH-HHHHH--------HhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhC
Q psy12794          2 YWRCYYSN-TDAIIYVVDSSDRDRIGISK-EELLA--------MLKEEELRDAILVILANKQDMKNCM--SVAEVHRALG   69 (106)
Q Consensus         2 ~~~~~~~~-~d~~i~v~d~~~~~~~~~~~-~~~~~--------~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~   69 (106)
                      +|..|+++ ++++++++++.+..++.... .|...        ........+.|+++|+||+|+....  ...++.+.++
T Consensus        71 ~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  150 (190)
T 2cxx_A           71 EIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFE  150 (190)
T ss_dssp             HHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhh
Confidence            35567776 66666666666566666552 22211        1111111468999999999987543  1223344443


Q ss_pred             CCCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         70 LENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        70 ~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ... .....+++++||++|.|++++|+++.+.+.+
T Consensus       151 ~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  184 (190)
T 2cxx_A          151 VPL-SEIDKVFIPISAKFGDNIERLKNRIFEVIRE  184 (190)
T ss_dssp             CCG-GGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhh-hccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence            210 0112468999999999999999999988754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.45  E-value=2.3e-13  Score=88.75  Aligned_cols=94  Identities=15%  Similarity=0.014  Sum_probs=66.3

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--HHHHHHHhCCCCcCCCceEEEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS--VAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      .+++++|++++|+|++++.++.+.. ++.. +..   .++|+++|+||+|+.+...  ..++.+.+..........++++
T Consensus       253 ~~~~~ad~~llv~D~~~~~s~~~~~-~~~~-~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (436)
T 2hjg_A          253 KAIDRSEVVAVVLDGEEGIIEQDKR-IAGY-AHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  327 (436)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHHH-HHHH-HHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHhCCEEEEEEcCCcCCcHHHHH-HHHH-HHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            3788999999999999988777653 3333 332   4699999999999865422  2233322221111223568999


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||++|.|++++++.+.+.+.
T Consensus       328 ~SA~tg~~v~~l~~~i~~~~~  348 (436)
T 2hjg_A          328 MSALTKKRIHTLMPAIIKASE  348 (436)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHH
Confidence            999999999999999987764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.43  E-value=5.3e-13  Score=85.12  Aligned_cols=91  Identities=18%  Similarity=0.250  Sum_probs=65.7

Q ss_pred             hhccCCeEEEEEECCCcc--hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794          6 YYSNTDAIIYVVDSSDRD--RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      +...+|++++|+|++++.  ++.....++..+....  .++|+++|+||+|+.......+..+.+.     ..+++++++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~i  315 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKI  315 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEEC
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEE
Confidence            445799999999998765  5666666665554431  2689999999999865332223333321     134579999


Q ss_pred             cccCCCChHHHHHHHHHHHh
Q psy12794         84 SAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ||++|+|++++++++.+.+.
T Consensus       316 SA~~g~gi~~l~~~i~~~l~  335 (357)
T 2e87_A          316 SALKGTGIDLVKEEIIKTLR  335 (357)
T ss_dssp             BTTTTBTHHHHHHHHHHHHH
T ss_pred             eCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999998774

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.43  E-value=1.3e-12  Score=86.20  Aligned_cols=87  Identities=23%  Similarity=0.298  Sum_probs=66.0

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      ..+++++|++++|+|++++.++.+.. .+ +.+     .++|+++|+||+|+.......++.+..+      ...+++++
T Consensus       318 ~~~~~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~i  384 (482)
T 1xzp_A          318 LQEIEKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKI  384 (482)
T ss_dssp             HHHHHHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEE
T ss_pred             HHHhhcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEE
Confidence            45789999999999999887776543 22 332     3689999999999976545455555433      23478999


Q ss_pred             cccCCCChHHHHHHHHHHHh
Q psy12794         84 SAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ||++|.|+++++++|.+.+.
T Consensus       385 SAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          385 SALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             EGGGTCCHHHHHHHHHHHTH
T ss_pred             ECCCCCCHHHHHHHHHHHHh
Confidence            99999999999999988653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.41  E-value=3.6e-13  Score=88.32  Aligned_cols=94  Identities=15%  Similarity=0.073  Sum_probs=64.5

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEEEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      .+++++|++++|+|++++.+..  ..++...+..   .++|+++|+||+|+.+..  ...++.+.+..........++++
T Consensus       273 ~~~~~ad~~llviD~~~~~~~~--~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (456)
T 4dcu_A          273 KAIDRSEVVAVVLDGEEGIIEQ--DKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  347 (456)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHH--HHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhhCCEEEEEEeCCCCcCHH--HHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            3788999999999998754432  2234444433   468999999999986532  22333333321111123468999


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||++|.|++++|+.+.+.+.
T Consensus       348 ~SA~~g~gv~~l~~~i~~~~~  368 (456)
T 4dcu_A          348 MSALTKKRIHTLMPAIIKASE  368 (456)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999988764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.41  E-value=2.5e-12  Score=75.34  Aligned_cols=95  Identities=13%  Similarity=0.208  Sum_probs=70.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..++++++++++|+|.++..+++.+..|+..+... ...+.|+++++||+|+.+.  ...........     ..++.
T Consensus        94 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~  167 (191)
T 1oix_A           94 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNGLS  167 (191)
T ss_dssp             CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred             hhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCE
Confidence            5778899999999999999888887766665543321 1246899999999998642  23333333332     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++++||+++.|++++++++.+.+
T Consensus       168 ~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          168 FIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            89999999999999999998765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.40  E-value=4.8e-14  Score=82.09  Aligned_cols=88  Identities=20%  Similarity=0.304  Sum_probs=63.6

Q ss_pred             chhhhhc--cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCC
Q psy12794          2 YWRCYYS--NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKD   75 (106)
Q Consensus         2 ~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~   75 (106)
                      +|..|++  ++|++++|+|.++   ++....++.....    .+.|+++++||+|+...    ....++.+.+       
T Consensus        76 ~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------  141 (188)
T 2wjg_A           76 IARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-------  141 (188)
T ss_dssp             HHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-------
T ss_pred             HHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHh-------
Confidence            3566775  4999999999864   4444555544433    46899999999997532    1233333333       


Q ss_pred             CceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         76 RTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                       +++++++||+++.|++++|+++.+.+.+
T Consensus       142 -~~~~~~~Sa~~~~~v~~l~~~i~~~~~~  169 (188)
T 2wjg_A          142 -GVKVVPLSAAKKMGIEELKKAISIAVKD  169 (188)
T ss_dssp             -TSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred             -CCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence             3579999999999999999999988764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.39  E-value=6.2e-13  Score=83.16  Aligned_cols=92  Identities=15%  Similarity=0.061  Sum_probs=64.2

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HHHHHHHhCCCCcCCCceEEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-VAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +..+++++|++++|+|++++.+..+  .++.+.+.... .+.|+++|+||+|+.+... ..+..+.+      ....+++
T Consensus        80 ~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~  150 (301)
T 1wf3_A           80 VYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPR  150 (301)
T ss_dssp             HHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEE
T ss_pred             HHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEE
Confidence            3567899999999999987655443  34444444321 3689999999999864322 22222222      1234789


Q ss_pred             EccccCCCChHHHHHHHHHHHh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++||++|.|++++++.+.+.+.
T Consensus       151 ~iSA~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          151 MLSALDERQVAELKADLLALMP  172 (301)
T ss_dssp             ECCTTCHHHHHHHHHHHHTTCC
T ss_pred             EEeCCCCCCHHHHHHHHHHhcc
Confidence            9999999999999999987653

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.39  E-value=7.5e-13  Score=86.11  Aligned_cols=89  Identities=21%  Similarity=0.209  Sum_probs=64.0

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      +..+++++|++++|+|++.....   ..++..+ ..   .+.|+++|+||+|+...... +..+.+.    ...++++++
T Consensus       107 ~~~~l~~aD~vllVvD~~~~~~~---~~~l~~l-~~---~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~  174 (423)
T 3qq5_A          107 ARRVFYRADCGILVTDSAPTPYE---DDVVNLF-KE---MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLL  174 (423)
T ss_dssp             HHHHHTSCSEEEEECSSSCCHHH---HHHHHHH-HH---TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCC
T ss_pred             HHHHHhcCCEEEEEEeCCChHHH---HHHHHHH-Hh---cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEE
Confidence            35588999999999998433222   2233333 22   37899999999998765443 3333343    334678999


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||++|.|++++++++.+.+.
T Consensus       175 vSAktg~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          175 VSALQKKGFDDIGKTISEILP  195 (423)
T ss_dssp             CSSCCTTSTTTHHHHHHHHSC
T ss_pred             EECCCCCCHHHHHHHHHHhhh
Confidence            999999999999999998873

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.38  E-value=2.1e-14  Score=88.00  Aligned_cols=85  Identities=19%  Similarity=0.178  Sum_probs=62.1

Q ss_pred             chhhhh--ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCC
Q psy12794          2 YWRCYY--SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKD   75 (106)
Q Consensus         2 ~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~   75 (106)
                      +++.|+  +++|++++|+|+++..+...+    ...+..   .+.|+++|+||+|+.+.    .....+.+.++      
T Consensus        74 i~~~~~~~~~~d~vi~VvDas~~~~~~~l----~~~l~~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg------  140 (256)
T 3iby_A           74 IAAQSVIDLEYDCIINVIDACHLERHLYL----TSQLFE---LGKPVVVALNMMDIAEHRGISIDTEKLESLLG------  140 (256)
T ss_dssp             HHHHHHHHSCCSEEEEEEEGGGHHHHHHH----HHHHTT---SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC------
T ss_pred             HHHHHHhhCCCCEEEEEeeCCCchhHHHH----HHHHHH---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC------
Confidence            456677  899999999999875443332    233333   36899999999997532    23344555443      


Q ss_pred             CceEEEEccccCCCChHHHHHHHHHH
Q psy12794         76 RTFQIFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        76 ~~~~~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                        ++++++||++|.|++++++++.+.
T Consensus       141 --~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          141 --CSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             --SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             --CCEEEEECCCCCCHHHHHHHHHhh
Confidence              589999999999999999999764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.38  E-value=1e-12  Score=87.59  Aligned_cols=93  Identities=14%  Similarity=0.217  Sum_probs=62.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++..|++++|++++|+|+++....   ..|+..+....  .+.|+++|+||+|+.+.  ....++.+.+.     ..+.+
T Consensus       114 ~~~~~l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~  183 (535)
T 3dpu_A          114 SHQFFMTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENR  183 (535)
T ss_dssp             TCHHHHHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTC
T ss_pred             HHHHHccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCc
Confidence            467789999999999999765444   33443333321  35899999999998653  23444555443     23457


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++++.+.+.+.+
T Consensus       184 ~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          184 FHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             EEECCC-----CTTHHHHHHHHHTC
T ss_pred             eEEEecCcccCHHHHHHHHHHHHhc
Confidence            9999999999999999999988753

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.36  E-value=5.1e-12  Score=83.32  Aligned_cols=88  Identities=16%  Similarity=0.223  Sum_probs=61.8

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHH--HHHHhCCCCcCCCceEEEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAE--VHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   82 (106)
                      .+++++|++++|+|++++.++..... ...++...  .++|+++|+||+|+........  +.+.        ...++++
T Consensus       308 ~~~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~--------~~~~~i~  376 (476)
T 3gee_A          308 MKMAEADLILYLLDLGTERLDDELTE-IRELKAAH--PAAKFLTVANKLDRAANADALIRAIADG--------TGTEVIG  376 (476)
T ss_dssp             CCCSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH--------HTSCEEE
T ss_pred             hhcccCCEEEEEEECCCCcchhhhHH-HHHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc--------CCCceEE
Confidence            47899999999999998877642211 11222221  2689999999999875432211  2211        0147899


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||++|.|++++++++.+.+.
T Consensus       377 vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          377 ISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             CBTTTTBSHHHHHHHHTHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHh
Confidence            999999999999999998875

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.36  E-value=6.6e-14  Score=86.48  Aligned_cols=87  Identities=20%  Similarity=0.228  Sum_probs=62.1

Q ss_pred             chhhhhc--cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCC
Q psy12794          2 YWRCYYS--NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKD   75 (106)
Q Consensus         2 ~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~   75 (106)
                      +++.|+.  ++|++++|+|+++..+..   .+...+..    .+.|+++++||+|+...    .....+.+.+       
T Consensus        71 v~~~~~~~~~~d~vi~V~D~t~~e~~~---~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-------  136 (272)
T 3b1v_A           71 VARDYLLSQRADSILNVVDATNLERNL---YLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL-------  136 (272)
T ss_dssp             HHHHHHHTTCCSEEEEEEEGGGHHHHH---HHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH-------
T ss_pred             HHHHHHhcCCCCEEEEEecCCchHhHH---HHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc-------
Confidence            3566776  599999999998754332   23333332    36899999999997532    2333444444       


Q ss_pred             CceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         76 RTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                       +++++++||++|.|++++|+++.+.+.
T Consensus       137 -g~~vi~~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          137 -GVPVVATSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             -TSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred             -CCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence             358999999999999999999987653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.35  E-value=2.2e-12  Score=84.28  Aligned_cols=89  Identities=19%  Similarity=0.214  Sum_probs=62.5

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHH-HHHhCCCCcCCCce-EE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEV-HRALGLENLKDRTF-QI   80 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~-~~   80 (106)
                      +..|++++|++++|+|.+++.+..+  .++.+++..   .++|+++|+||+|+.... ..+. .+.+.      .++ ++
T Consensus        75 ~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~------lg~~~~  142 (439)
T 1mky_A           75 TLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS------LGFGEP  142 (439)
T ss_dssp             HHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG------GSSCSC
T ss_pred             HHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh------cCCCCE
Confidence            5678999999999999987655443  223344332   368999999999975321 1222 22221      122 57


Q ss_pred             EEccccCCCChHHHHHHHHHHHh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++||++|.|++++++++.+.+.
T Consensus       143 ~~iSA~~g~gv~~L~~~i~~~l~  165 (439)
T 1mky_A          143 IPVSAEHNINLDTMLETIIKKLE  165 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEeccCCCCHHHHHHHHHHhcc
Confidence            89999999999999999998775

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.34  E-value=6.1e-12  Score=82.13  Aligned_cols=88  Identities=22%  Similarity=0.288  Sum_probs=62.6

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCce-EEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTF-QIF   81 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~   81 (106)
                      |..+++++|++++|+|.+++.++.+  .++.+.+..   .++|+++|+||+|+....  .+..+.      ...++ +++
T Consensus        76 ~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~~------~~lg~~~~~  142 (436)
T 2hjg_A           76 AEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDF------YSLGFGEPY  142 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------CCCSS------GGGSSCCCE
T ss_pred             HHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccch--hhHHHH------HHcCCCCeE
Confidence            5678999999999999988766544  345555554   578999999999975421  001111      11122 689


Q ss_pred             EccccCCCChHHHHHHHHHHHh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++||++|.|++++++++.+.+.
T Consensus       143 ~iSA~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          143 PISGTHGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             ECBTTTTBTHHHHHHHHHHTGG
T ss_pred             EEeCcCCCChHHHHHHHHHhcC
Confidence            9999999999999999988775

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.34  E-value=5.8e-12  Score=77.23  Aligned_cols=85  Identities=25%  Similarity=0.360  Sum_probs=62.2

Q ss_pred             hhhh--ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCCc
Q psy12794          4 RCYY--SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDRT   77 (106)
Q Consensus         4 ~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~   77 (106)
                      +.|+  .++|++++|+|.++..+...   ++..+..    .+.|+++++||+|+...    ....++.+.++        
T Consensus        76 ~~~~~~~~~d~ii~V~D~t~~~~~~~---~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------  140 (258)
T 3a1s_A           76 RDYLLKGDADLVILVADSVNPEQSLY---LLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------  140 (258)
T ss_dssp             HHHHHHSCCSEEEEEEETTSCHHHHH---HHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------
T ss_pred             HHHHhhcCCCEEEEEeCCCchhhHHH---HHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------
Confidence            4555  58999999999988654332   3333332    36899999999997432    23344555443        


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++++||++|.|++++++++.+.+.
T Consensus       141 ~~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          141 IPVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence            58999999999999999999998764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.33  E-value=2.8e-14  Score=88.16  Aligned_cols=86  Identities=19%  Similarity=0.223  Sum_probs=61.2

Q ss_pred             hhhhh--ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCC
Q psy12794          3 WRCYY--SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDR   76 (106)
Q Consensus         3 ~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~   76 (106)
                      ++.|+  +++|++++|+|+++..+......++.+       .+.|+++|+||+|+.+.    .....+.+.++       
T Consensus        77 ~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg-------  142 (274)
T 3i8s_A           77 ACHYILSGDADLLINVVDASNLERNLYLTLQLLE-------LGIPCIVALNMLDIAEKQNIRIEIDALSARLG-------  142 (274)
T ss_dssp             HHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHH-------HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT-------
T ss_pred             HHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHh-------cCCCEEEEEECccchhhhhHHHHHHHHHHhcC-------
Confidence            34454  799999999999875444333322222       26899999999997532    23344444443       


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                       ++++++||++|.|++++++++.+.+.
T Consensus       143 -~~~i~~SA~~g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          143 -CPVIPLVSTRGRGIEALKLAIDRYKA  168 (274)
T ss_dssp             -SCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred             -CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence             58999999999999999999987653

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.33  E-value=3.9e-12  Score=82.30  Aligned_cols=96  Identities=15%  Similarity=0.088  Sum_probs=66.3

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCce
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTF   78 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~   78 (106)
                      +..++.++|++++|+|++++.++....+++......   ..+|+++++||+|+.+....    .++.+.+...  .....
T Consensus        92 ~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~  166 (403)
T 3sjy_A           92 MLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT--WAENV  166 (403)
T ss_dssp             HHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS--TTTTC
T ss_pred             HHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh--CCCCC
Confidence            445788999999999999876455554444332221   23699999999998653211    2333333211  22356


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++++||++|.|++++++.|.+.+.
T Consensus       167 ~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          167 PIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcChHHHHHHHHHhCC
Confidence            8999999999999999999988664

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.29  E-value=9.8e-12  Score=81.22  Aligned_cols=94  Identities=16%  Similarity=0.139  Sum_probs=64.1

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEEEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      .+++.+|++++++|.+++.+..+.  .+...+..   .++|+++++||+|+.+..  ...++.+.+..........++++
T Consensus       259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (439)
T 1mky_A          259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF  333 (439)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence            367889999999999876665543  23343333   468999999999986532  23333322211100223458999


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||++|.|++++++.+.+.+.
T Consensus       334 ~SA~~g~gv~~l~~~i~~~~~  354 (439)
T 1mky_A          334 TSADKGWNIDRMIDAMNLAYA  354 (439)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999987664

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.27  E-value=3.6e-11  Score=79.03  Aligned_cols=85  Identities=19%  Similarity=0.277  Sum_probs=60.8

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      +++++|++++|+|.+++.+..+ .. +...+.     ++|+++|+||+|+.+.....    ...  . .....+++++||
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~-~~-i~~~l~-----~~piivV~NK~Dl~~~~~~~----~~~--~-~~~~~~~i~iSA  365 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGD-QE-IYEQVK-----HRPLILVMNKIDLVEKQLIT----SLE--Y-PENITQIVHTAA  365 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHH-HH-HHHHHT-----TSCEEEEEECTTSSCGGGST----TCC--C-CTTCCCEEEEBT
T ss_pred             hhhcCCEEEEEeccCCCCCHHH-HH-HHHhcc-----CCcEEEEEECCCCCcchhhH----HHH--H-hccCCcEEEEEC
Confidence            6789999999999998766554 22 333332     37999999999986532111    111  0 113467999999


Q ss_pred             cCCCChHHHHHHHHHHHhh
Q psy12794         86 KEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++|.|++++++++.+.+..
T Consensus       366 ktg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          366 AQKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             TTTBSHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999988753

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.25  E-value=5.4e-11  Score=80.30  Aligned_cols=94  Identities=18%  Similarity=0.232  Sum_probs=65.8

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      +..+++.+|++++|+|+++..++.....|... ..    .+.|+++++||+|+.... ..++.+.+... +.....++++
T Consensus        90 v~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a-~~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~~~~~vi~  162 (600)
T 2ywe_A           90 VSRALAACEGALLLIDASQGIEAQTVANFWKA-VE----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGLDPEEAIL  162 (600)
T ss_dssp             HHHHHHTCSEEEEEEETTTBCCHHHHHHHHHH-HH----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCCCGGGCEE
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHHHHHHH-HH----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCCCcccEEE
Confidence            55678999999999999988776655543322 22    468999999999987542 33322222110 0111225899


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||++|.|++++++++.+.+.
T Consensus       163 vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          163 ASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSC
T ss_pred             EEeecCCCchHHHHHHHHhcc
Confidence            999999999999999998764

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.24  E-value=3.3e-12  Score=81.83  Aligned_cols=93  Identities=17%  Similarity=0.184  Sum_probs=61.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCc---
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRT---   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~---   77 (106)
                      ++.++++.++++++|+|++++.  ......+.++.     .++|+++|+||+|+.... ....+.+.+... .+..+   
T Consensus        62 ~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~-~~~~g~~~  133 (368)
T 3h2y_A           62 ILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYS-AKQLGLKP  133 (368)
T ss_dssp             HHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHH-HHHTTCCC
T ss_pred             HHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHH-HHHcCCCc
Confidence            4678899999999999998742  11111233332     368999999999986432 233333221100 01112   


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHH
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      .+++.+||++|.|++++++.+.+..
T Consensus       134 ~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          134 EDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            2789999999999999999987654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.24  E-value=1.4e-11  Score=82.19  Aligned_cols=96  Identities=18%  Similarity=0.070  Sum_probs=64.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---CHHHHHHHhCCCC-cCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM---SVAEVHRALGLEN-LKDRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~~~~~~~~-~~~~~   77 (106)
                      ++..+++.+|++++|+|+++........ .+.. +..   .+.|+++++||+|+.+..   ...++.+ +.... .....
T Consensus        68 ~~~~~~~~aD~vILVVDa~dg~~~qt~e-~l~~-~~~---~~vPiIVViNKiDl~~~~~~~v~~~l~~-~~~~~e~~~~~  141 (537)
T 3izy_P           68 MRARGTQVTDIVILVVAADDGVMKQTVE-SIQH-AKD---AHVPIVLAINKCDKAEADPEKVKKELLA-YDVVCEDYGGD  141 (537)
T ss_dssp             SBBSSSBSBSSCEEECBSSSCCCHHHHH-HHHH-HHT---TTCCEEECCBSGGGTTTSCCSSSSHHHH-TTSCCCCSSSS
T ss_pred             HHHHHHccCCEEEEEEECCCCccHHHHH-HHHH-HHH---cCCcEEEEEecccccccchHHHHHHHHh-hhhhHHhcCCC
Confidence            4567889999999999999865554433 2222 222   468999999999986421   1112222 21111 01235


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++++||++|.|++++++++...+.
T Consensus       142 ~~iv~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          142 VQAVHVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             EEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCchhHHHHHHHhhh
Confidence            78999999999999999999987753

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.24  E-value=3.5e-11  Score=81.20  Aligned_cols=91  Identities=19%  Similarity=0.252  Sum_probs=65.5

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCcCCCceE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~   79 (106)
                      |..+++.+|++++|+|+++..++.....|.. ...    .+.|+++++||+|+.+...   ..++.+.++.     ...+
T Consensus        88 v~~~l~~aD~aILVVDa~~gv~~qt~~~~~~-~~~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~-----~~~~  157 (599)
T 3cb4_D           88 VSRSLAACEGALLVVDAGQGVEAQTLANCYT-AME----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGI-----DATD  157 (599)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCTHHHHHHHH-HHH----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCC-----CCTT
T ss_pred             HHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEeeeccCcccccHHHHHHHHHHHhCC-----Ccce
Confidence            5678899999999999998766655544332 222    3689999999999975421   1233344332     1124


Q ss_pred             EEEccccCCCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++||++|.|++++++++.+.+.
T Consensus       158 vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          158 AVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             CEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             EEEeecccCCCchhHHHHHhhcCC
Confidence            899999999999999999998765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.24  E-value=3.1e-11  Score=74.32  Aligned_cols=88  Identities=22%  Similarity=0.323  Sum_probs=63.2

Q ss_pred             hhhhh--ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCC
Q psy12794          3 WRCYY--SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDR   76 (106)
Q Consensus         3 ~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~   76 (106)
                      ++.|+  .++|++++|+|+++..   ....++......   ...|+++++||+|+.+.    .....+.+.++       
T Consensus        73 ~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-------  139 (271)
T 3k53_A           73 ARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG-------  139 (271)
T ss_dssp             HHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS-------
T ss_pred             HHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC-------
Confidence            55666  6899999999987642   233334444332   23899999999996431    23444555553       


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                       ++++++||++|.|++++++.+.+.+..
T Consensus       140 -~~~~~~Sa~~g~gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          140 -VPVIPTNAKKGEGVEELKRMIALMAEG  166 (271)
T ss_dssp             -SCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred             -CcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence             589999999999999999999987753

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.22  E-value=2.1e-10  Score=74.34  Aligned_cols=93  Identities=17%  Similarity=0.171  Sum_probs=54.6

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC----CHHHHHHHhCCCCcCCCceEEE
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM----SVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      ....+|++++|+|++++.......+.+..+ ..  ...+|+++++||+|+.+..    ...++.+.+...  .....+++
T Consensus       101 ~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~--l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~~i  175 (408)
T 1s0u_A          101 GASLMDGAILVIAANEPCPQPQTKEHLMAL-EI--LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGT--IAENAPII  175 (408)
T ss_dssp             TCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HH--TTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTS--TTTTCCEE
T ss_pred             hHhhCCEEEEEEECCCCCCCchhHHHHHHH-HH--cCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhc--CCCCCeEE
Confidence            355679999999998642111111112211 11  1236899999999986532    234455555421  12357899


Q ss_pred             EccccCCCChHHHHHHHHHHHh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++||++|.|+++++++|.+.+.
T Consensus       176 ~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          176 PISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             EC------CHHHHHHHHHHHSC
T ss_pred             EeeCCCCCCHHHHHHHHHHhCC
Confidence            9999999999999999988654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.20  E-value=2.8e-11  Score=75.67  Aligned_cols=90  Identities=20%  Similarity=0.257  Sum_probs=60.8

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-cCCHHHHHHHhCCCCcCCCce-EEE
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN-CMSVAEVHRALGLENLKDRTF-QIF   81 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~-~~~   81 (106)
                      ..+++.+|++++|+|.++ -+.  ...++.+.+..   .+.|+++++||+|+.. .....+..+.+.    ...++ .++
T Consensus        83 ~~~l~~~D~vl~Vvd~~~-~~~--~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~----~~~~~~~~i  152 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR-WTP--DDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLA----SQMNFLDIV  152 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC-CCH--HHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHH----TTSCCSEEE
T ss_pred             HHHHhcCCEEEEEEeCCC-CCH--HHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHH----HhcCcCceE
Confidence            456789999999999976 332  22344444443   4689999999999865 111222222222    11223 789


Q ss_pred             EccccCCCChHHHHHHHHHHHh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++||+++.|++++++.+.+.+.
T Consensus       153 ~iSA~~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          153 PISAETGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             ECCTTTTTTHHHHHHHHHTTCC
T ss_pred             EEECCCCCCHHHHHHHHHHhCC
Confidence            9999999999999999986543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.17  E-value=2.6e-10  Score=76.98  Aligned_cols=94  Identities=22%  Similarity=0.187  Sum_probs=62.0

Q ss_pred             chhhhhccCCeEEEEEECCC---cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--------------HH--
Q psy12794          2 YWRCYYSNTDAIIYVVDSSD---RDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS--------------VA--   62 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--------------~~--   62 (106)
                      ++..+++.+|++++|+|+++   +.+++.+.     .+..   .+.|+++++||+|+.....              ..  
T Consensus        86 ~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v  157 (594)
T 1g7s_A           86 LRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV  157 (594)
T ss_dssp             SBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred             HHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence            45567888999999999998   44444322     1222   4689999999999864211              00  


Q ss_pred             ---------HHHHHhCCCCc----------CCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         63 ---------EVHRALGLENL----------KDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        63 ---------~~~~~~~~~~~----------~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                               ++.+.+....+          .....+++.+||++|.|++++++++...+.
T Consensus       158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                     11111110000          123568999999999999999999987664

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.16  E-value=1.2e-11  Score=79.23  Aligned_cols=94  Identities=15%  Similarity=0.147  Sum_probs=62.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCc---
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRT---   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~---   77 (106)
                      ++.++++.++++++|+|++++.+.  ....+.+++     .++|+++|+||+|+.... ....+.+.+... ....+   
T Consensus        64 ~L~~~~~~~~lil~VvD~~d~~~s--~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~-~~~~g~~~  135 (369)
T 3ec1_A           64 MLHRIGESKALVVNIVDIFDFNGS--FIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRM-AEELGLCP  135 (369)
T ss_dssp             HHHHHHHHCCEEEEEEETTCSGGG--CCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH-HHTTTCCC
T ss_pred             HHHHhhccCcEEEEEEECCCCCCc--hhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHH-HHHcCCCc
Confidence            466788999999999999986531  111123332     368999999999986532 233333321100 01112   


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      .+++.+||++|.|++++++.+.+...
T Consensus       136 ~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          136 VDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             SEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            37899999999999999999876553

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.16  E-value=3.5e-12  Score=75.88  Aligned_cols=59  Identities=22%  Similarity=0.342  Sum_probs=45.8

Q ss_pred             chhhhhcc----CCeEEEEEECC-CcchHHHHHHHHHHHhcCcC---CCCCeEEEEeeCCCCCCcCC
Q psy12794          2 YWRCYYSN----TDAIIYVVDSS-DRDRIGISKEELLAMLKEEE---LRDAILVILANKQDMKNCMS   60 (106)
Q Consensus         2 ~~~~~~~~----~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~~~   60 (106)
                      +|..|+++    +|++++|+|++ ++.++.....++.+.+....   ..+.|+++|+||+|+.....
T Consensus        71 ~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  137 (218)
T 1nrj_B           71 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  137 (218)
T ss_dssp             HHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             HHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence            46677777    89999999999 77888888887777765321   24789999999999876543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.15  E-value=8.8e-11  Score=72.87  Aligned_cols=87  Identities=16%  Similarity=0.178  Sum_probs=61.8

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      ..++++|++++|+|+.++.+....  .+.+++     .++|.++|+||+|+.+........+.+.     ..+++++.+|
T Consensus        19 ~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~-----~~g~~~i~iS   86 (282)
T 1puj_A           19 EKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFE-----NQGIRSLSIN   86 (282)
T ss_dssp             HHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHH-----TTTCCEEECC
T ss_pred             HHHhhCCEEEEEEeCCCCCccCCH--HHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHH-----hcCCcEEEEE
Confidence            457899999999999987665321  233443     4689999999999875322223333332     2245889999


Q ss_pred             ccCCCChHHHHHHHHHHHh
Q psy12794         85 AKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~~  103 (106)
                      |+++.|++++++.+.+.+.
T Consensus        87 A~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           87 SVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             TTTCTTGGGHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHH
Confidence            9999999999998877654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.15  E-value=1.9e-10  Score=76.78  Aligned_cols=51  Identities=16%  Similarity=0.124  Sum_probs=38.2

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC   58 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   58 (106)
                      +..+++.+|++++|+|+++..+...... +.. ...   .++|+++++||+|+...
T Consensus        99 ~~~~l~~aD~allVvDa~~g~~~~t~~~-~~~-~~~---~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           99 TYRTLTAVDSALMVIDAAKGVEPRTIKL-MEV-CRL---RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             HHHGGGGCSEEEEEEETTTCSCHHHHHH-HHH-HHT---TTCCEEEEEECTTSCCS
T ss_pred             HHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHH-HHH---cCCCEEEEEeCCCCccc
Confidence            5678999999999999998766655442 322 233   46899999999998653

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.14  E-value=4.1e-10  Score=72.10  Aligned_cols=92  Identities=22%  Similarity=0.215  Sum_probs=62.2

Q ss_pred             hhccCCeEEEEEECCCcc--hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHH----H---HHHhCCCCcCCC
Q psy12794          6 YYSNTDAIIYVVDSSDRD--RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAE----V---HRALGLENLKDR   76 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~---~~~~~~~~~~~~   76 (106)
                      ++..+|++++|+|++++.  ...... .+.+.+......+.|+++|+||+|+.+.. ..+    +   ...+.     ..
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~-----~~  326 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY-----SP  326 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC-----SC
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc-----CC
Confidence            468899999999998765  333322 23333333333578999999999986532 221    1   12221     12


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ..+++++||+++.|++++++++.+.+..
T Consensus       327 ~~~~~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          327 IFDVIPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             EEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence            4578999999999999999999887653

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.13  E-value=1.1e-10  Score=77.10  Aligned_cols=95  Identities=17%  Similarity=0.233  Sum_probs=61.2

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH----HHHHHhCCCCcCCCce
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA----EVHRALGLENLKDRTF   78 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~   78 (106)
                      +..++.++|++++|+|+++........ .+. .+..   .+.|.++++||+|+.+.....    ++.+.+.... .....
T Consensus        90 ~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~-~~~~~  163 (482)
T 1wb1_A           90 VVSAADIIDLALIVVDAKEGPKTQTGE-HML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTH-NLKNS  163 (482)
T ss_dssp             HHHHTTSCCEEEEEEETTTCSCHHHHH-HHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSS-SGGGC
T ss_pred             HHHHHhhCCEEEEEEecCCCccHHHHH-HHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhc-ccccc
Confidence            345688999999999998742222111 121 2222   357889999999987532222    2333322110 01256


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++++||++|.|+++++++|.+.+.
T Consensus       164 ~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          164 SIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHHhhc
Confidence            8999999999999999999998763

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.12  E-value=8.1e-11  Score=77.23  Aligned_cols=89  Identities=20%  Similarity=0.250  Sum_probs=58.4

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      +..+++++|++++|+|..+..+.  ...++.+.+..   .++|+++|+||+|+.+..  ....+.+.     ...-..+.
T Consensus        96 ~~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~-----lg~~~~~~  163 (456)
T 4dcu_A           96 AEIAMDEADVIIFMVNGREGVTA--ADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYS-----LGFGEPYP  163 (456)
T ss_dssp             HHHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT---CCSCEEEEEECC-----------CCSGG-----GSSSSEEE
T ss_pred             HHhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHH-----cCCCceEE
Confidence            56788999999999998764333  33456666655   579999999999975321  11111111     11124579


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||++|.|++++++.+.+.+.
T Consensus       164 iSA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          164 ISGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             CCTTTCTTHHHHHHHHHTTGG
T ss_pred             eecccccchHHHHHHHHhhcc
Confidence            999999999999999987654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.10  E-value=1.6e-10  Score=71.68  Aligned_cols=94  Identities=12%  Similarity=0.073  Sum_probs=60.0

Q ss_pred             chhhhhccCCeEE-EEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCC--CcCCCce
Q psy12794          2 YWRCYYSNTDAII-YVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLE--NLKDRTF   78 (106)
Q Consensus         2 ~~~~~~~~~d~~i-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~   78 (106)
                      ++..|+++++.++ +|+|+++..+..+...++ +.+..   .+.|+++|+||+|+.+....  ..+.+...  .......
T Consensus       154 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~-~~~~~---~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~  227 (299)
T 2aka_B          154 MLMQFVTKENCLILAVSPANSDLANSDALKIA-KEVDP---QGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYI  227 (299)
T ss_dssp             HHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH-HHHCT---TCSSEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEE
T ss_pred             HHHHHHcCCCeEEEEEecCCcchhhhHHHHHH-HHhCC---CCCeEEEEEEccccCCCCch--HHHHHhCCcCcCCCCcE
Confidence            3567888998777 799997654433322223 33332   46899999999998653220  11122211  1111235


Q ss_pred             EEEEccccCCCChHHHHHHHHHH
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                      +++.+||++|.|++++++++.+.
T Consensus       228 ~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          228 GVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             ECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             EEECCChhhccccccHHHHHHHH
Confidence            78999999999999999988764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.08  E-value=6.3e-10  Score=72.14  Aligned_cols=92  Identities=15%  Similarity=0.192  Sum_probs=58.7

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC----CHHHHHHHhCCCCcCCCceEEEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM----SVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      ...+|++++|+|+++........+.+..+ ..  ...+|+++++||+|+.+..    ...++.+.+...  .....++++
T Consensus       104 ~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~--~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~~i~  178 (410)
T 1kk1_A          104 ASLMDGAILVIAANEPCPRPQTREHLMAL-QI--IGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGT--VAENAPIIP  178 (410)
T ss_dssp             GGGCSEEEEEEETTSCSSCHHHHHHHHHH-HH--HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS--TTTTCCEEE
T ss_pred             hhhCCEEEEEEECCCCCCChhHHHHHHHH-HH--cCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhc--CcCCCeEEE
Confidence            45679999999998642111111112111 11  1236899999999986532    123344444321  123578999


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||++|.|+++++++|.+.+.
T Consensus       179 vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          179 ISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSC
T ss_pred             eeCCCCCCHHHHHHHHHHhCC
Confidence            999999999999999988654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.04  E-value=4.3e-10  Score=65.51  Aligned_cols=67  Identities=22%  Similarity=0.353  Sum_probs=49.4

Q ss_pred             chhhhhcc----CCeEEEEEECC-CcchHHHHHHHHHHHhcCcC---CCCCeEEEEeeCCCCCCcCCHHHHHHHh
Q psy12794          2 YWRCYYSN----TDAIIYVVDSS-DRDRIGISKEELLAMLKEEE---LRDAILVILANKQDMKNCMSVAEVHRAL   68 (106)
Q Consensus         2 ~~~~~~~~----~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~~~~~~~~~~~   68 (106)
                      .|..|+.+    +|++++|+|++ ++.++.....++...+....   ..+.|+++|+||+|+.+.....++.+.+
T Consensus       107 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l  181 (193)
T 2ged_A          107 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL  181 (193)
T ss_dssp             CHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             HHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence            46677766    89999999999 78888888777776654321   1468999999999987665555544433

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.04  E-value=2e-10  Score=75.03  Aligned_cols=89  Identities=18%  Similarity=0.238  Sum_probs=54.6

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHH-------HHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-C-------HHHHHHH
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGIS-------KEELLAMLKEEELRDAILVILANKQDMKNCM-S-------VAEVHRA   67 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~-------~~~~~~~   67 (106)
                      +..+++.+|++++|+|+++ .+++..       .+.+ .....  ..-+|+++++||+|+.+.. .       ..++.+.
T Consensus       101 ~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~-~~~~~--~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~  176 (435)
T 1jny_A          101 MITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHI-ILAKT--MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKF  176 (435)
T ss_dssp             HHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHH-HHHHH--TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhhhcCEEEEEEECCC-CccccccccchHHHHHH-HHHHH--cCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHH
Confidence            4567899999999999988 455532       2212 11111  1224789999999987521 1       1233333


Q ss_pred             hCCCCcCCCceEEEEccccCCCChHHHH
Q psy12794         68 LGLENLKDRTFQIFKTSAKEGEGLNDSM   95 (106)
Q Consensus        68 ~~~~~~~~~~~~~~~~sa~~~~~v~~~~   95 (106)
                      +.........++++++||++|.|+.+++
T Consensus       177 ~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          177 MRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             HHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             HHHcCCCcCCceEEEeecccCccccccc
Confidence            3211112224789999999999997543

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.00  E-value=1.8e-09  Score=70.22  Aligned_cols=92  Identities=18%  Similarity=0.234  Sum_probs=62.9

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhc-CcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLK-EEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      .+.++.+++++|++ ...+.++..+..+... ...+..+|.++++||+|+........+.+.+.     ..+..++.+||
T Consensus       233 ~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iSA  306 (416)
T 1udx_A          233 IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSA  306 (416)
T ss_dssp             HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCT
T ss_pred             HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEEC
Confidence            45699999999997 4556555544333322 11123589999999999865422223333332     23468999999


Q ss_pred             cCCCChHHHHHHHHHHHhh
Q psy12794         86 KEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++|++++++++.+.+.+
T Consensus       307 ~~g~gi~eL~~~i~~~l~~  325 (416)
T 1udx_A          307 LTGAGLPALKEALHALVRS  325 (416)
T ss_dssp             TTCTTHHHHHHHHHHHHHT
T ss_pred             CCccCHHHHHHHHHHHHHh
Confidence            9999999999999988754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.99  E-value=1.5e-09  Score=71.79  Aligned_cols=89  Identities=21%  Similarity=0.121  Sum_probs=51.5

Q ss_pred             hhhhhccCCeEEEEEECCCcchHH-----HHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHH----HHHhCCC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIG-----ISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEV----HRALGLE   71 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~----~~~~~~~   71 (106)
                      +..+++++|++++|+|++++.+..     ....+.......  ...+|+++++||+|+.+.  ....++    .+.+...
T Consensus       128 ~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~  205 (483)
T 3p26_A          128 AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDI  205 (483)
T ss_dssp             HHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH--cCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHc
Confidence            456789999999999998753321     111122222222  123579999999998752  111222    2222111


Q ss_pred             CcCCCceEEEEccccCCCChHH
Q psy12794         72 NLKDRTFQIFKTSAKEGEGLND   93 (106)
Q Consensus        72 ~~~~~~~~~~~~sa~~~~~v~~   93 (106)
                      ......++++++||++|.|+.+
T Consensus       206 g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          206 GFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             TCCGGGEEEEECCSSSCTTSSS
T ss_pred             CCCcccceEEEEeeecCCCccc
Confidence            1122367999999999999975

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.99  E-value=2.6e-10  Score=75.59  Aligned_cols=90  Identities=22%  Similarity=0.249  Sum_probs=58.4

Q ss_pred             chhhhhccCCeEEEEEECCCc---chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc--CC-
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDR---DRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL--KD-   75 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~~-   75 (106)
                      ++..++..+|++++|+|+++.   .+.+.+    ... ..   .+.|+++++||+|+.+... .++.+.+.....  .. 
T Consensus        67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~-~~---~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~  137 (501)
T 1zo1_I           67 MRARGAQATDIVVLVVAADDGVMPQTIEAI----QHA-KA---AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEW  137 (501)
T ss_dssp             SBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHH-HH---TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCC
T ss_pred             HHHHHHhhCCEEEEEeecccCccHHHHHHH----HHH-Hh---cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHh
Confidence            455678899999999999874   333322    121 11   4689999999999864211 111111111100  11 


Q ss_pred             -CceEEEEccccCCCChHHHHHHHHH
Q psy12794         76 -RTFQIFKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        76 -~~~~~~~~sa~~~~~v~~~~~~l~~  100 (106)
                       ...+++++||++|.|++++++++..
T Consensus       138 ~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          138 GGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             SSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             CCCccEEEEeeeeccCcchhhhhhhh
Confidence             2368999999999999999998864

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.97  E-value=7e-10  Score=71.71  Aligned_cols=96  Identities=20%  Similarity=0.132  Sum_probs=60.4

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCC-----HHHHHHHhCCCCcCCC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMS-----VAEVHRALGLENLKDR   76 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~   76 (106)
                      +..+++.+|++++|+|+++....... +.+. .+..   .+.| +++++||+|+.+...     ..++.+.+........
T Consensus        83 ~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~-~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           83 MITGTAPLDGCILVVAANDGPMPQTR-EHLL-LARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHH-HHHH-HHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHhhHhhCCEEEEEEECCCCCCHHHH-HHHH-HHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            34568899999999999876443322 2232 2222   3577 689999999864211     1223333321111223


Q ss_pred             ceEEEEccccCCCC----------hHHHHHHHHHHHh
Q psy12794         77 TFQIFKTSAKEGEG----------LNDSMDWLSNALQ  103 (106)
Q Consensus        77 ~~~~~~~sa~~~~~----------v~~~~~~l~~~~~  103 (106)
                      ..+++++||++|.|          +.++++.+.+.+.
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            46899999999764          8888888877653

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.97  E-value=4.9e-09  Score=68.47  Aligned_cols=88  Identities=18%  Similarity=0.111  Sum_probs=53.9

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--C----HHHHHHHhCCCCcCCC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--S----VAEVHRALGLENLKDR   76 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~----~~~~~~~~~~~~~~~~   76 (106)
                      +..++.++|++++|+|+++...... .+++.. ...  ...+|+++++||+|+.+..  .    ..++.+.+........
T Consensus       121 ~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~-~~~--~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~  196 (434)
T 1zun_B          121 MATGASTCDLAIILVDARYGVQTQT-RRHSYI-ASL--LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPT  196 (434)
T ss_dssp             HHHHHTTCSEEEEEEETTTCSCHHH-HHHHHH-HHH--TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCS
T ss_pred             HHHHHhhCCEEEEEEECCCCCcHHH-HHHHHH-HHH--cCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            4557899999999999987643322 222222 222  1234799999999986521  1    1122222221110123


Q ss_pred             ceEEEEccccCCCChHHH
Q psy12794         77 TFQIFKTSAKEGEGLNDS   94 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~   94 (106)
                      ..+++++||++|.|+.++
T Consensus       197 ~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          197 TMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             EEEEEECCTTTCTTTSSC
T ss_pred             CceEEEEeccCCCCcccc
Confidence            478999999999999874

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.94  E-value=7e-10  Score=71.84  Aligned_cols=95  Identities=19%  Similarity=0.212  Sum_probs=59.6

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCC-H----HHHHHHhCCCCcCCC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMS-V----AEVHRALGLENLKDR   76 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~----~~~~~~~~~~~~~~~   76 (106)
                      +..+++.+|++++|+|+++..... ..+++... ..   .+.| +++++||+|+.+... .    .++.+.+........
T Consensus        92 ~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~-~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  166 (405)
T 2c78_A           92 MITGAAQMDGAILVVSAADGPMPQ-TREHILLA-RQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGD  166 (405)
T ss_dssp             HHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHH-HH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccccc
Confidence            345688999999999998765433 23333322 22   3567 889999999874211 1    123333321111123


Q ss_pred             ceEEEEccccCCCC------------------hHHHHHHHHHHH
Q psy12794         77 TFQIFKTSAKEGEG------------------LNDSMDWLSNAL  102 (106)
Q Consensus        77 ~~~~~~~sa~~~~~------------------v~~~~~~l~~~~  102 (106)
                      ..+++++||++|.|                  +.++++.+.+.+
T Consensus       167 ~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l  210 (405)
T 2c78_A          167 EVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI  210 (405)
T ss_dssp             TSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence            46899999999987                  677777776655

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.93  E-value=3.7e-09  Score=72.64  Aligned_cols=97  Identities=24%  Similarity=0.271  Sum_probs=64.4

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-----CH---H----HHHH----
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-----SV---A----EVHR----   66 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-----~~---~----~~~~----   66 (106)
                      +..|++++|++++|+|++++.+..+... +...+..   .+.|+++|+||+|+....     ..   .    .+.+    
T Consensus       194 ~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~  269 (695)
T 2j69_A          194 SLGYVNNCHAILFVMRASQPCTLGERRY-LENYIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNA  269 (695)
T ss_dssp             HTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHHTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEEEEEEeCCCccchhHHHH-HHHHHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHH
Confidence            5578999999999999988777766543 3333333   367899999999985431     10   0    1211    


Q ss_pred             HhCCCC----cCCCceEEEEcccc--------------CCCChHHHHHHHHHHHh
Q psy12794         67 ALGLEN----LKDRTFQIFKTSAK--------------EGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        67 ~~~~~~----~~~~~~~~~~~sa~--------------~~~~v~~~~~~l~~~~~  103 (106)
                      .+....    ......+++.+||+              ++.|+++++..+.+.+.
T Consensus       270 ~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          270 NLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             HHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence            111000    00123478999999              99999999999987664

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.93  E-value=3.8e-09  Score=69.14  Aligned_cols=90  Identities=18%  Similarity=0.224  Sum_probs=53.3

Q ss_pred             hhhhhccCCeEEEEEECCCcch---H---HHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcC----CH----HHHHHH
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDR---I---GISKEELLAMLKEEELRDAI-LVILANKQDMKNCM----SV----AEVHRA   67 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~----~~----~~~~~~   67 (106)
                      +..+++++|++++|+|+++...   +   ....+.+.. ...   .+.| +++++||+|+....    ..    .++.+.
T Consensus       112 ~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~-~~~---~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~  187 (439)
T 3j2k_7          112 MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAML-AKT---AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPF  187 (439)
T ss_pred             HHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHH-HHH---cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHH
Confidence            4456789999999999987531   1   111212222 222   3455 99999999985321    11    122222


Q ss_pred             hCCCCcCC-CceEEEEccccCCCChHHHHH
Q psy12794         68 LGLENLKD-RTFQIFKTSAKEGEGLNDSMD   96 (106)
Q Consensus        68 ~~~~~~~~-~~~~~~~~sa~~~~~v~~~~~   96 (106)
                      +....... ..++++++||++|.|+.++.+
T Consensus       188 l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          188 LKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHhcccccCCeeEEEeeccCCcccccccc
Confidence            22111111 257899999999999998654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.93  E-value=4.3e-09  Score=67.56  Aligned_cols=90  Identities=9%  Similarity=0.084  Sum_probs=59.0

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeE-EEEee-CCCCCCcCCH----HHHHHHhCCCCcCCCce
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAIL-VILAN-KQDMKNCMSV----AEVHRALGLENLKDRTF   78 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~D~~~~~~~----~~~~~~~~~~~~~~~~~   78 (106)
                      .+++.+|++++|+| +.. ......+++... ..   .+.|. ++++| |+|+ +....    .++.+.+...  ....+
T Consensus        79 ~~~~~aD~ailVvd-~~g-~~~qt~e~~~~~-~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~  149 (370)
T 2elf_A           79 TALNISDIAVLCIP-PQG-LDAHTGECIIAL-DL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDW  149 (370)
T ss_dssp             HHHHTCSEEEEEEC-TTC-CCHHHHHHHHHH-HH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTC
T ss_pred             HHHHHCCEEEEEEc-CCC-CcHHHHHHHHHH-HH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCce
Confidence            45688999999999 543 233333333222 22   34666 89999 9998 43211    2344444321  11347


Q ss_pred             EEEE--ccccC---CCChHHHHHHHHHHHh
Q psy12794         79 QIFK--TSAKE---GEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~--~sa~~---~~~v~~~~~~l~~~~~  103 (106)
                      ++++  +||++   +.|++++++.|.+.+.
T Consensus       150 ~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          150 ECISLNTNKSAKNPFEGVDELKARINEVAE  179 (370)
T ss_dssp             EEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred             EEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence            8999  99999   9999999999988764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.90  E-value=2.9e-10  Score=72.75  Aligned_cols=82  Identities=9%  Similarity=0.190  Sum_probs=41.8

Q ss_pred             eEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEEEEccccC
Q psy12794         12 AIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQIFKTSAKE   87 (106)
Q Consensus        12 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~   87 (106)
                      +++++++.+ ..++......+...+.    .++|+++|+||+|+......    .++.+.+     ...+++++++||++
T Consensus       148 ~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~-----~~~~i~~~~~Sa~~  217 (361)
T 2qag_A          148 CCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTLKERERLKKRILDEI-----EEHNIKIYHLPDAE  217 (361)
T ss_dssp             EEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCHHHHHHHHHHHHHHT-----TCC-CCSCCCC---
T ss_pred             EEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-----HHCCCCEEeCCCcC
Confidence            455555532 3344444433333332    46899999999998653222    1233333     33467899999999


Q ss_pred             CCChHHHHHHHHHHHhh
Q psy12794         88 GEGLNDSMDWLSNALQK  104 (106)
Q Consensus        88 ~~~v~~~~~~l~~~~~~  104 (106)
                      +.| ++.|.++.+.+.+
T Consensus       218 ~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          218 SDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             -------CHHHHHHHHH
T ss_pred             CCc-chhHHHHHHHHHh
Confidence            999 8888888777654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.86  E-value=2.8e-09  Score=64.98  Aligned_cols=97  Identities=13%  Similarity=-0.011  Sum_probs=55.6

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCC--------------
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLE--------------   71 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~--------------   71 (106)
                      ++.+ +++++++|.+...+..+...............+.|+++|+||+|+.......++.+.+...              
T Consensus       135 ~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~  213 (262)
T 1yrb_A          135 NLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQ  213 (262)
T ss_dssp             TSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHH
T ss_pred             HHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhcccccc
Confidence            4466 8999999986443333322111111000001357999999999986432111122111000              


Q ss_pred             -----------CcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         72 -----------NLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        72 -----------~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                                 .......+++++||+++.|++++++++.+.+.
T Consensus       214 ~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          214 GLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             chhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence                       00011237899999999999999999998775

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.86  E-value=3.2e-09  Score=64.83  Aligned_cols=94  Identities=13%  Similarity=0.194  Sum_probs=56.5

Q ss_pred             hhhccCCeEEEEEECCCcchHH-HHHHHHHHHhcCcCCCCCeEEEEee-CCCCCCcCCHHH------------HHHHhCC
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIG-ISKEELLAMLKEEELRDAILVILAN-KQDMKNCMSVAE------------VHRALGL   70 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~n-K~D~~~~~~~~~------------~~~~~~~   70 (106)
                      .+++++|++++|+|+++..... ....++.+.... . ...|.++++| |+|+.+. ....            ..+.++.
T Consensus       101 ~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~  177 (260)
T 2xtp_A          101 LSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-D-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGG  177 (260)
T ss_dssp             HHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-G-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTT
T ss_pred             hcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-h-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCC
Confidence            3678999999999998632222 222333333221 0 1356666666 9998743 2222            2233321


Q ss_pred             CCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         71 ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        71 ~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ..   ..+..+++||+++.|++++|+++.+.+..
T Consensus       178 ~~---~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          178 RI---CAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             CE---EECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eE---EEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            00   00111789999999999999999988764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.85  E-value=1.8e-09  Score=68.90  Aligned_cols=89  Identities=19%  Similarity=0.193  Sum_probs=57.1

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCC--cCCCceE
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLEN--LKDRTFQ   79 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~--~~~~~~~   79 (106)
                      ....+|++++|+|++.......        +. ....+.|.++|+||+|+......    .++.+.+....  ...++.+
T Consensus       189 ~~~~aD~vl~V~d~~~~~~~~~--------l~-~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  259 (355)
T 3p32_A          189 VANMVDTFVLLTLARTGDQLQG--------IK-KGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPP  259 (355)
T ss_dssp             HHTTCSEEEEEEESSTTCTTTT--------CC-TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCC
T ss_pred             HHHhCCEEEEEECCCCCccHHH--------HH-HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCc
Confidence            3578999999999865433211        11 11234699999999998643221    12222221000  0122467


Q ss_pred             EEEccccCCCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++.+||++|+|++++++++.+.+.
T Consensus       260 vi~iSA~~g~Gi~~L~~~i~~~~~  283 (355)
T 3p32_A          260 VLTMSAVEGRGLAELWDTVERHRQ  283 (355)
T ss_dssp             EEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999988764

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.85  E-value=6.7e-09  Score=64.89  Aligned_cols=95  Identities=13%  Similarity=0.113  Sum_probs=57.1

Q ss_pred             hhhhhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcC--CCceE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLK--DRTFQ   79 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~   79 (106)
                      +..|++++|++++|+|.++.. ...+.. .+.+.+..   .+.|+++|+||+|+.....  ...+.+......  ....+
T Consensus       161 ~~~~~~~~d~iilvvd~~~~~~~~~~~~-~i~~~~~~---~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~  234 (315)
T 1jwy_B          161 VMAYIKKQNAIIVAVTPANTDLANSDAL-QLAKEVDP---EGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPLTLGFIG  234 (315)
T ss_dssp             HHHHHHSTTEEEEEEEESSSCSTTCSHH-HHHHHHCS---SCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCCTTCEEE
T ss_pred             HHHHHcCCCeEEEEEEecCcchhhhHHH-HHHHHhCC---CCCcEEEEEcCcccCCcch--HHHHHHhCCCccCCCCeEE
Confidence            456889999999999974332 111111 13333333   4689999999999865332  011222211101  12345


Q ss_pred             EEEccccC---CCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKE---GEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~---~~~v~~~~~~l~~~~~  103 (106)
                      +..+||.+   +.|+.++++.+...+.
T Consensus       235 v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          235 VINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             CCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             EecCChhhhccCCCHHHHHHHHHHHHh
Confidence            55666666   8999999998887764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.79  E-value=9.5e-09  Score=61.11  Aligned_cols=84  Identities=17%  Similarity=0.275  Sum_probs=55.9

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      ...+.+++|+|+++....  ... ....      .+.|.++++||+|+.+.  ....++.+.+...   ....+++++||
T Consensus       128 ~~~~~~i~vvd~~~~~~~--~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~i~~~Sa  195 (221)
T 2wsm_A          128 LGENYRVVMVSVTEGDDV--VEK-HPEI------FRVADLIVINKVALAEAVGADVEKMKADAKLI---NPRAKIIEMDL  195 (221)
T ss_dssp             CSCSEEEEEEEGGGCTTH--HHH-CHHH------HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHH---CTTSEEEECBT
T ss_pred             cccCcEEEEEeCCCcchh--hhh-hhhh------hhcCCEEEEecccCCcchhhHHHHHHHHHHHh---CCCCeEEEeec
Confidence            356788899998764321  111 1111      24789999999998542  2444444443210   12468999999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q psy12794         86 KEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~~  103 (106)
                      ++|.|++++++++.+.+.
T Consensus       196 ~~g~gi~~l~~~l~~~~~  213 (221)
T 2wsm_A          196 KTGKGFEEWIDFLRGILN  213 (221)
T ss_dssp             TTTBTHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999998764

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.78  E-value=6.9e-09  Score=74.43  Aligned_cols=94  Identities=19%  Similarity=0.211  Sum_probs=59.0

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCC-----HHHHHHHhCCCCcCCCc
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMS-----VAEVHRALGLENLKDRT   77 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~   77 (106)
                      ..+++.+|++|+|+|+++..... ..+++.. +..   .+.| +++++||+|+.+...     ..++.+.+.........
T Consensus       377 i~gas~AD~aILVVDAtdGv~~Q-TrEhL~l-l~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~  451 (1289)
T 3avx_A          377 ITGAAQMDGAILVVAATDGPMPQ-TREHILL-GRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDD  451 (1289)
T ss_dssp             HHTSCCCSEEEEEEETTTCSCTT-HHHHHHH-HHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHhhCCEEEEEEcCCccCcHH-HHHHHHH-HHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccc
Confidence            45678999999999998754322 2222322 222   3567 789999999874211     12233333211112235


Q ss_pred             eEEEEccccCC--------CChHHHHHHHHHHH
Q psy12794         78 FQIFKTSAKEG--------EGLNDSMDWLSNAL  102 (106)
Q Consensus        78 ~~~~~~sa~~~--------~~v~~~~~~l~~~~  102 (106)
                      ++++++||++|        .|+.++++.+.+.+
T Consensus       452 vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          452 TPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             CCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             eeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            78999999999        46888888887654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.78  E-value=2e-08  Score=68.73  Aligned_cols=49  Identities=14%  Similarity=0.136  Sum_probs=35.2

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK   56 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   56 (106)
                      +..+++.+|++++|+|+++....... .++.....    .+.|+++++||+|+.
T Consensus        91 ~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           91 IRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             HHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence            56788999999999998876443322 23333222    368999999999986

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.77  E-value=1.1e-09  Score=74.23  Aligned_cols=89  Identities=22%  Similarity=0.167  Sum_probs=51.7

Q ss_pred             hhhhhccCCeEEEEEECCCcc---hH---HHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHH----HHHHHhCC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRD---RI---GISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVA----EVHRALGL   70 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~----~~~~~~~~   70 (106)
                      +..+++++|++++|+|++++.   ++   ..... .......  ...+|+++|+||+|+.+.  ....    ++.+.+..
T Consensus       262 ~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e-~l~~~~~--lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~  338 (611)
T 3izq_1          262 AIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASS--LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVD  338 (611)
T ss_dssp             HTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH-HHHHHHT--TTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCceEEEEECCCCcccccchhhhHHHH-HHHHHHH--cCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHh
Confidence            345788999999999997631   00   11111 2222222  123579999999998652  1111    22222211


Q ss_pred             CCcCCCceEEEEccccCCCChHHH
Q psy12794         71 ENLKDRTFQIFKTSAKEGEGLNDS   94 (106)
Q Consensus        71 ~~~~~~~~~~~~~sa~~~~~v~~~   94 (106)
                      .......++++++||++|.|+.++
T Consensus       339 ~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          339 IGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hcccccCccEEeeecccCCCcccc
Confidence            111223578999999999999865

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.75  E-value=5.1e-09  Score=69.03  Aligned_cols=89  Identities=17%  Similarity=0.184  Sum_probs=50.1

Q ss_pred             hhhhhccCCeEEEEEECCCcc---hHH---HHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcC-CH-------HHHHHH
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRD---RIG---ISKEELLAMLKEEELRDAI-LVILANKQDMKNCM-SV-------AEVHRA   67 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~-~~-------~~~~~~   67 (106)
                      +..++..+|++++|+|+++..   +|+   ...+.+.. ...   .+.| +++++||+|+.... ..       .++.+.
T Consensus       138 ~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~-~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~  213 (467)
T 1r5b_A          138 MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL-ART---QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMF  213 (467)
T ss_dssp             ----TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHH-HHH---TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHH
T ss_pred             HHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHH-HHH---cCCCEEEEEEECccCCCccccHHHHHHHHHHHHHH
Confidence            345678999999999998752   111   11111211 111   3566 99999999986421 11       123332


Q ss_pred             hCCC-CcC-CCceEEEEccccCCCChHHHH
Q psy12794         68 LGLE-NLK-DRTFQIFKTSAKEGEGLNDSM   95 (106)
Q Consensus        68 ~~~~-~~~-~~~~~~~~~sa~~~~~v~~~~   95 (106)
                      +... ... ...++++++||++|.|+.+++
T Consensus       214 l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          214 LRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHhcCCCccCCceEEeccccccccccccc
Confidence            2110 001 125789999999999998654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.74  E-value=3.5e-08  Score=58.09  Aligned_cols=88  Identities=11%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCcCCCceEEEEc
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      +.++++++++|++.+.+..+..  +..++..   .+.|.++++||+|+.+...    ...+...+..   ....+.++++
T Consensus       107 ~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~  178 (210)
T 1pui_A          107 QSLQGLVVLMDIRHPLKDLDQQ--MIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FNGDVQVETF  178 (210)
T ss_dssp             TTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GCSCEEEEEC
T ss_pred             hcccEEEEEEECCCCCchhHHH--HHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cCCCCceEEE
Confidence            4789999999998765543211  2222222   4689999999999764321    1223333321   1124678999


Q ss_pred             cccCCCChHHHHHHHHHHHh
Q psy12794         84 SAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ||+++.|++++++++.+.+.
T Consensus       179 Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          179 SSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             BTTTTBSHHHHHHHHHHHHC
T ss_pred             eecCCCCHHHHHHHHHHHHh
Confidence            99999999999999988764

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.74  E-value=7.1e-10  Score=74.90  Aligned_cols=85  Identities=24%  Similarity=0.240  Sum_probs=44.7

Q ss_pred             hhhhccCCeEEEEEECCCcc---hH--H-HHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCc--CC----HHHHHHHh-C
Q psy12794          4 RCYYSNTDAIIYVVDSSDRD---RI--G-ISKEELLAMLKEEELRDAI-LVILANKQDMKNC--MS----VAEVHRAL-G   69 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~---~~--~-~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~--~~----~~~~~~~~-~   69 (106)
                      ..++..+|++++|+|++++.   ++  . .....+ .....   .+.| +++|+||+|+.+.  ..    ..++.+.+ .
T Consensus       273 ~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-~~~~~---lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~  348 (592)
T 3mca_A          273 IAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-YLLRA---LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIK  348 (592)
T ss_dssp             CC-------CCSEEEEEECCSSTTSCSCSSHHHHH-HHHHH---SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhCCEEEEEEECCCCccccccccchHHHHHH-HHHHH---cCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHH
Confidence            34678899999999998532   11  0 111111 12222   2454 9999999998641  11    12344444 2


Q ss_pred             CCCcCCCceEEEEccccCCCChH
Q psy12794         70 LENLKDRTFQIFKTSAKEGEGLN   92 (106)
Q Consensus        70 ~~~~~~~~~~~~~~sa~~~~~v~   92 (106)
                      ........++++++||++|.|+.
T Consensus       349 ~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          349 MVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TSCCCGGGEEEEEECSSSCSSSC
T ss_pred             hhCCCccceEEEEEecccCcccc
Confidence            22222345789999999999997

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.74  E-value=1.6e-09  Score=66.61  Aligned_cols=80  Identities=11%  Similarity=-0.029  Sum_probs=54.1

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      ..+.++|+++.|+|+.++.+.....  +. +     . ++|.++|+||+|+.+........+.+.     ..+.++ .+|
T Consensus        17 ~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~g~~v-~iS   81 (262)
T 3cnl_A           17 DLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK-----KQGKRV-ITT   81 (262)
T ss_dssp             HHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH-----HTTCCE-EEC
T ss_pred             HHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH-----HcCCeE-EEE
Confidence            4578999999999998875543210  11 1     2 789999999999875322223333332     123456 899


Q ss_pred             ccCCCChHHHHHHHH
Q psy12794         85 AKEGEGLNDSMDWLS   99 (106)
Q Consensus        85 a~~~~~v~~~~~~l~   99 (106)
                      |.++.|++++++.+.
T Consensus        82 a~~~~gi~~L~~~l~   96 (262)
T 3cnl_A           82 HKGEPRKVLLKKLSF   96 (262)
T ss_dssp             CTTSCHHHHHHHHCC
T ss_pred             CCCCcCHHHHHHHHH
Confidence            999999999887654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.74  E-value=2.5e-09  Score=67.09  Aligned_cols=86  Identities=17%  Similarity=0.206  Sum_probs=56.0

Q ss_pred             hhhhhccCCeEEEEEECCCcch-HHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCcCCCc
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDR-IGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENLKDRT   77 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~   77 (106)
                      ++....++|.+++|+|+.+|.. ...+.    +++...+..++|.++|+||+|+.+...    ..++.+.+.     ..+
T Consensus        80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~----r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~-----~~g  150 (307)
T 1t9h_A           80 IRPPICNVDQAVLVFSAVQPSFSTALLD----RFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-----NIG  150 (307)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHHHH----HHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH-----HHT
T ss_pred             hHHHHHhCCEEEEEEeCCCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHH-----hCC
Confidence            3445789999999999986543 33333    333211125789999999999875422    233444432     124


Q ss_pred             eEEEEccccCCCChHHHHHH
Q psy12794         78 FQIFKTSAKEGEGLNDSMDW   97 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~   97 (106)
                      .+++.+||.++.|++++++.
T Consensus       151 ~~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          151 YDVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             CCEEECCHHHHTTCTTTGGG
T ss_pred             CeEEEEecCCCCCHHHHHhh
Confidence            57899999999998776553

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.73  E-value=2.8e-07  Score=61.67  Aligned_cols=51  Identities=18%  Similarity=0.205  Sum_probs=35.9

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC   58 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   58 (106)
                      +..+++.+|++++|+|+++...... . .+......   .+.|+++++||+|+...
T Consensus        99 ~~~~l~~aD~~IlVvDa~~g~~~~t-~-~~~~~~~~---~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           99 TYRTLTAVDCCLMVIDAAKGVEDRT-R-KLMEVTRL---RDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             HHHGGGGCSEEEEEEETTTCSCHHH-H-HHHHHHTT---TTCCEEEEEECTTSCCS
T ss_pred             HHHHHHHCCEEEEEEeCCccchHHH-H-HHHHHHHH---cCCCEEEEEcCcCCccc
Confidence            4568899999999999987543222 2 12233332   46899999999998654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.71  E-value=1.7e-09  Score=66.70  Aligned_cols=83  Identities=14%  Similarity=0.275  Sum_probs=43.7

Q ss_pred             CCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH----HHHHHhCCCCcCCCceEEEEccc
Q psy12794         10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA----EVHRALGLENLKDRTFQIFKTSA   85 (106)
Q Consensus        10 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~sa   85 (106)
                      +|+++++++.++.. +......+.+.+..    ++|+++|+||+|+.......    .+.+.+     ...+++++.+||
T Consensus       116 ~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l-----~~~~i~v~~~sa  185 (274)
T 3t5d_A          116 VQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEI-----QEHKIKIYEFPE  185 (274)
T ss_dssp             CCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHH-----HHTTCCCCCC--
T ss_pred             eeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHH-----HHcCCeEEcCCC
Confidence            78999999876532 22222223344433    68999999999975432222    222222     123567888999


Q ss_pred             cCCCChHHHHHHHHHHH
Q psy12794         86 KEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        86 ~~~~~v~~~~~~l~~~~  102 (106)
                      .+++|+++++++|.+.+
T Consensus       186 ~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          186 TDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             ---------CHHHHHTC
T ss_pred             CCChhHHHHHHHHhcCC
Confidence            99999999999988754

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.67  E-value=3.5e-07  Score=62.93  Aligned_cols=52  Identities=21%  Similarity=0.034  Sum_probs=38.8

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC   58 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   58 (106)
                      .|..+++.+|++++|+|+++..++..... +.....    .+.|+++++||+|+...
T Consensus        93 ~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           93 EVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAEK----YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred             HHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHHHH----cCCCEEEEEECCCcccC
Confidence            35678899999999999998776665443 222222    36899999999998653

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.64  E-value=1.9e-07  Score=59.50  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=53.1

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCc--CCCce
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENL--KDRTF   78 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~--~~~~~   78 (106)
                      .....+|.+++|+|++.+.....+.   ..      ..+.|.++++||+|+.+...    ..++...+.....  .....
T Consensus       183 ~l~~~~d~vl~V~d~~~~~~~~~i~---~~------il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~  253 (349)
T 2www_A          183 AVADMVDMFVLLLPPAGGDELQGIK---RG------IIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKP  253 (349)
T ss_dssp             HHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCC
T ss_pred             hHHhhCCEEEEEEcCCcchhHHHhH---HH------HHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCc
Confidence            3467899999999987643221111   11      12468899999999854211    1122222221100  01235


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++.+||++|.|++++++++.+.+.
T Consensus       254 ~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          254 KVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHHHHH
Confidence            7899999999999999999987653

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.61  E-value=5.4e-08  Score=64.05  Aligned_cols=88  Identities=16%  Similarity=0.157  Sum_probs=50.8

Q ss_pred             hhhhhccCCeEEEEEECCCcch---HH---HHHHHHHHHhcCcCCCCC-eEEEEeeCCCCCCc--CCH----HHHHHHhC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDR---IG---ISKEELLAMLKEEELRDA-ILVILANKQDMKNC--MSV----AEVHRALG   69 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~--~~~----~~~~~~~~   69 (106)
                      +..++.++|++++|+|+++...   |+   ...+.+.. ...   .+. ++++++||+|+.+.  ...    .++.+.+.
T Consensus       102 ~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~-~~~---~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~  177 (458)
T 1f60_A          102 MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALL-AFT---LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIK  177 (458)
T ss_dssp             HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHH-HHH---TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHH-HHH---cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHH
Confidence            4457889999999999986421   10   22222222 222   244 59999999998631  111    12222221


Q ss_pred             CCCcCCCceEEEEccccCCCChHHH
Q psy12794         70 LENLKDRTFQIFKTSAKEGEGLNDS   94 (106)
Q Consensus        70 ~~~~~~~~~~~~~~sa~~~~~v~~~   94 (106)
                      .........+++++||++|.|+.++
T Consensus       178 ~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          178 KVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             HHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             HcCCCccCceEEEeecccCcCcccc
Confidence            1111112468999999999998643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.57  E-value=9.3e-08  Score=60.72  Aligned_cols=89  Identities=19%  Similarity=0.171  Sum_probs=52.4

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH----HHHHHhCCCC--cCCCceE
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA----EVHRALGLEN--LKDRTFQ   79 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~~~~~~--~~~~~~~   79 (106)
                      ..+.+|++++|+|++.......    +..     ...+.|.++|+||+|+.+.....    ++.+.++...  ......+
T Consensus       166 ~~~~aD~vl~Vvd~~~~~~~~~----l~~-----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  236 (341)
T 2p67_A          166 VARMVDCFISLQIAGGGDDLQG----IKK-----GLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPR  236 (341)
T ss_dssp             HHTTCSEEEEEECC------CC----CCH-----HHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCE
T ss_pred             HHHhCCEEEEEEeCCccHHHHH----HHH-----hhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCc
Confidence            3578999999999865422110    000     00146889999999986432222    2222211100  0112357


Q ss_pred             EEEccccCCCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++.+||++|.|++++++++.+.+.
T Consensus       237 vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          237 VLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             EEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHH
Confidence            899999999999999999987653

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.55  E-value=2.8e-08  Score=63.42  Aligned_cols=89  Identities=11%  Similarity=0.147  Sum_probs=53.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCceEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      +...|++++|++++++|.++..........+...+..   .+.|+++|+||+|+.... ...+..+...    ...+.+|
T Consensus       165 ~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~---~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~  237 (360)
T 3t34_A          165 MVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP---SGDRTFGVLTKIDLMDKGTDAVEILEGRS----FKLKYPW  237 (360)
T ss_dssp             HHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCT---TCTTEEEEEECGGGCCTTCCSHHHHTTSS----SCCSSCC
T ss_pred             HHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcc---cCCCEEEEEeCCccCCCcccHHHHHcCcc----ccccCCe
Confidence            3567899999999999876543322111112222222   467999999999986432 2122222111    2345678


Q ss_pred             EEccccCCCChHHHHHH
Q psy12794         81 FKTSAKEGEGLNDSMDW   97 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~   97 (106)
                      +.+|+.++.++++.+..
T Consensus       238 ~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          238 VGVVNRSQADINKNVDM  254 (360)
T ss_dssp             EEECCCCHHHHHTTCCH
T ss_pred             EEEEECChHHhccCCCH
Confidence            88999888777665443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.55  E-value=3.5e-07  Score=58.49  Aligned_cols=83  Identities=19%  Similarity=0.221  Sum_probs=51.6

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCcCCCceEEEEc
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      ..|+|.+++|.+..-..+...+.+++... ..   .++|.++|+||+|+.+...   ..+....+     ...+++++.+
T Consensus       128 ~anvD~v~iv~a~~P~~~~~~i~r~L~~a-~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y-----~~~G~~v~~~  198 (358)
T 2rcn_A          128 AANIDQIVIVSAILPELSLNIIDRYLVGC-ET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIY-----RNIGYRVLMV  198 (358)
T ss_dssp             EECCCEEEEEEESTTTCCHHHHHHHHHHH-HH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHH-----HTTTCCEEEC
T ss_pred             HhcCCEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCchhHHHHHHHHHHH-----HhCCCcEEEE
Confidence            57899999886654222333333333211 11   4678899999999865422   11233333     2235679999


Q ss_pred             cccCCCChHHHHHHH
Q psy12794         84 SAKEGEGLNDSMDWL   98 (106)
Q Consensus        84 sa~~~~~v~~~~~~l   98 (106)
                      ||.++.|++++...+
T Consensus       199 Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          199 SSHTQDGLKPLEEAL  213 (358)
T ss_dssp             BTTTTBTHHHHHHHH
T ss_pred             ecCCCcCHHHHHHhc
Confidence            999999999887643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.55  E-value=5.1e-08  Score=58.11  Aligned_cols=59  Identities=14%  Similarity=0.287  Sum_probs=42.5

Q ss_pred             CCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         43 DAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        43 ~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +.|.++++||+|+.+.  ....++.+.+..   .....+++++||++|.|++++|+++.+.+..
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            3677999999998542  234444443321   0124589999999999999999999987754

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.55  E-value=1.8e-06  Score=59.55  Aligned_cols=51  Identities=12%  Similarity=0.022  Sum_probs=38.1

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC   58 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   58 (106)
                      +..+++.+|++++|+|+++..+...... +.....    .+.|+++++||+|+...
T Consensus        92 ~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~~~~----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           92 VERSLRVLDGAVTVLDAQSGVEPQTETV-WRQATT----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             HHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred             HHHHHHHCCEEEEEECCCCCCcHHHHHH-HHHHHH----cCCCEEEEEECCCcccc
Confidence            5678899999999999998766655443 333322    36899999999998653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.53  E-value=4.5e-08  Score=62.35  Aligned_cols=93  Identities=13%  Similarity=0.103  Sum_probs=53.1

Q ss_pred             hhhhhccCCeEEE-EEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HHHHHHHhCCCCcCCCceEE
Q psy12794          3 WRCYYSNTDAIIY-VVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-VAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         3 ~~~~~~~~d~~i~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~   80 (106)
                      +..|+++++.+++ +.|.+....-.+...++ +.+..   .+.|+++|+||+|+.+... ..+..+. ....+.....++
T Consensus       160 ~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~-~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~l~~~~~~v  234 (353)
T 2x2e_A          160 LMQFVTKENCLILAVSPANSDLANSDALKVA-KEVDP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGV  234 (353)
T ss_dssp             HHHHHTSTTEEEEEEEETTSCGGGCHHHHHH-HHHCT---TCTTEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEEC
T ss_pred             HHHHHcCCCeEEEEEecCCCccchhHHHHHH-HHhCc---CCCceEEEeccccccCcchhHHHHHhC-CcccccCCceEE
Confidence            4567777765555 55654322211221122 22332   4689999999999864322 1222211 001111123478


Q ss_pred             EEccccCCCChHHHHHHHHH
Q psy12794         81 FKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~  100 (106)
                      +.+||+++.|++++++.+.+
T Consensus       235 ~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          235 VNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             CCCCHHHHHTTCCHHHHHHH
T ss_pred             EeCCcccccccccHHHHHHH
Confidence            89999999999999988876

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.46  E-value=1.7e-07  Score=65.00  Aligned_cols=88  Identities=14%  Similarity=0.081  Sum_probs=56.2

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-VAEVHRALGLENLKDRTFQIFKTSAK   86 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~   86 (106)
                      ..+|++++|+|++......+... +...+..   .+.|+++|+||+|+.+... ...+.. -....+.....+++.+||+
T Consensus       186 ~~aDlIL~VVDAs~~~~~~d~l~-ll~~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~  260 (772)
T 3zvr_A          186 KENCLILAVSPANSDLANSDALK-IAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQK  260 (772)
T ss_dssp             STTEEEEEEEETTSCSSSCHHHH-HHHHHCT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCE
T ss_pred             cCCcEEEEEEcCCCCcchhHHHH-HHHHHHh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEeccc
Confidence            57899999999986543333222 2333333   4689999999999864322 122222 1111111233578899999


Q ss_pred             CCCChHHHHHHHHH
Q psy12794         87 EGEGLNDSMDWLSN  100 (106)
Q Consensus        87 ~~~~v~~~~~~l~~  100 (106)
                      +|.|++++++.+.+
T Consensus       261 ~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          261 DIDGKKDITAALAA  274 (772)
T ss_dssp             ESSSSEEHHHHHHH
T ss_pred             ccccchhHHHHHHH
Confidence            99999999988876

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.45  E-value=2.6e-06  Score=58.86  Aligned_cols=51  Identities=10%  Similarity=-0.070  Sum_probs=36.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      .+..+++.+|++++|+|+++........ .+... ..   .+.|+++++||+|+..
T Consensus        98 ~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~-~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           98 EVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQA-NK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             HHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHH-HH---cCCCEEEEEeCCCccc
Confidence            3567889999999999998765444332 23222 22   4689999999999864

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.44  E-value=1.7e-07  Score=56.50  Aligned_cols=94  Identities=7%  Similarity=0.061  Sum_probs=49.6

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC-CCCCeEEEEeeCCCCCCcCCHH--------HHHHHhCCCCcC
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE-LRDAILVILANKQDMKNCMSVA--------EVHRALGLENLK   74 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~--------~~~~~~~~~~~~   74 (106)
                      ..+++++|++++|+|+++....+  ..++..+..... ...+|+++|+||+|+.+.....        .+.+...     
T Consensus       107 ~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~-----  179 (239)
T 3lxx_A          107 LLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD-----  179 (239)
T ss_dssp             HHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH-----
T ss_pred             HhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH-----
Confidence            34567889999999987543321  122222221100 0236999999999975432211        1111111     


Q ss_pred             CCceEEEEcccc-----CCCChHHHHHHHHHHHhh
Q psy12794         75 DRTFQIFKTSAK-----EGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        75 ~~~~~~~~~sa~-----~~~~v~~~~~~l~~~~~~  104 (106)
                      ..+..++.+++.     ++.|+.++++.+...+.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            112234444444     336889999888877643

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.32  E-value=1.2e-07  Score=59.37  Aligned_cols=56  Identities=11%  Similarity=0.173  Sum_probs=31.8

Q ss_pred             CCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         43 DAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        43 ~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +.|+++|+||.|+......    .++.+.+.     ..+++++++||+++ |++++|.++.+.+.+
T Consensus       155 ~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          155 KVNIVPVIAKADTLTLKERERLKKRILDEIE-----EHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             TSCEEEEECCGGGSCHHHHHHHHHHHHHHHH-----HTTCCCCCCC----------CHHHHHHHHT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH-----HcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            5799999999998643211    22333332     23568999999999 999999999988754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.23  E-value=9.5e-08  Score=61.88  Aligned_cols=47  Identities=26%  Similarity=0.282  Sum_probs=31.4

Q ss_pred             CCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHH
Q psy12794         43 DAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDS   94 (106)
Q Consensus        43 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~   94 (106)
                      .+|+++++||+|+.......++.+.+.     ..+.+++.+||+.+.|+.++
T Consensus       214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~-----~~~~~vv~iSA~~e~~l~~L  260 (397)
T 1wxq_A          214 NKPMVIAANKADAASDEQIKRLVREEE-----KRGYIVIPTSAAAELTLRKA  260 (397)
T ss_dssp             HSCEEEEEECGGGSCHHHHHHHHHHHH-----HTTCEEEEECHHHHHHHHSC
T ss_pred             CCCEEEEEeCccccchHHHHHHHHHHh-----hcCCcEEEEeccchhhHHHH
Confidence            489999999999763222233333332     01347999999998888654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.11  E-value=2.4e-07  Score=60.40  Aligned_cols=87  Identities=13%  Similarity=0.233  Sum_probs=35.3

Q ss_pred             hhccCCe--EEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceE
Q psy12794          6 YYSNTDA--IIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         6 ~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~   79 (106)
                      ++.++++  ++++.+++. .+++.....+...+.    .+.|+++|+||+|+......    .++.+.+.     ..+++
T Consensus       133 l~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~-----~~~i~  202 (418)
T 2qag_C          133 QMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQ-----EHKIK  202 (418)
T ss_dssp             CCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHH-----HHTCC
T ss_pred             hccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHH-----HcCCe
Confidence            4556554  454544431 233333322323333    36899999999997542211    12222221     23567


Q ss_pred             EEEccccCCCChHHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++++||+++.++.+++..+...+
T Consensus       203 ~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          203 IYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             CCCCC-----------------C
T ss_pred             EEeCCCCCCcCHHHHHHHHHhhC
Confidence            88999999999998887776644

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.10  E-value=5.4e-05  Score=51.01  Aligned_cols=49  Identities=16%  Similarity=0.158  Sum_probs=34.1

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC   58 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   58 (106)
                      ..++-+|++|+|+|+...-...-.. .|.....    .+.|.+++.||+|....
T Consensus       119 raL~~~DgAvlVvda~~GV~~qT~~-v~~~a~~----~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          119 RVLTAVDSALVVIDAAKGVEAQTRK-LMDVCRM----RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             HHHHSCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred             HHHHhcCceEEEeecCCCcccccHH-HHHHHHH----hCCceEEEEecccchhc
Confidence            3467799999999998764443322 2333322    47899999999998653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.00  E-value=5.2e-06  Score=55.88  Aligned_cols=52  Identities=23%  Similarity=0.303  Sum_probs=36.9

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC   58 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   58 (106)
                      +..+++++|++++|+|+++.........++.. +..   .+.|+++|+||+|+...
T Consensus       182 ~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~-l~~---~~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          182 LRWFAERVDLIILLFDAHKLEISDEFSEAIGA-LRG---HEDKIRVVLNKADMVET  233 (550)
T ss_dssp             HHHHHHHCSEEEEEEETTSCCCCHHHHHHHHH-TTT---CGGGEEEEEECGGGSCH
T ss_pred             HHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHH-HHh---cCCCEEEEEECCCccCH
Confidence            45678899999999999875434444433433 333   45799999999998653

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.90  E-value=3.1e-05  Score=49.17  Aligned_cols=88  Identities=18%  Similarity=0.183  Sum_probs=49.8

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-----HHHHHHHhCCCCc--CCCceE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-----VAEVHRALGLENL--KDRTFQ   79 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-----~~~~~~~~~~~~~--~~~~~~   79 (106)
                      ..++|.+++++|++......       .+ .. ...+.+.+++.||+|+.....     ..++...+.....  .....+
T Consensus       166 ~~~~d~vl~v~d~~~~~~~~-------~i-~~-~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~  236 (337)
T 2qm8_A          166 ADLTDFFLVLMLPGAGDELQ-------GI-KK-GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPP  236 (337)
T ss_dssp             HTTSSEEEEEECSCC-------------C-CT-THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCC
T ss_pred             HhhCCEEEEEEcCCCcccHH-------HH-HH-HHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCC
Confidence            46889999999986432111       00 00 001246678889999643111     1222222221110  011346


Q ss_pred             EEEccccCCCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++.+||+++.|++++++.+.+...
T Consensus       237 vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          237 VVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            888999999999999999887653

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=97.69  E-value=6e-05  Score=53.13  Aligned_cols=50  Identities=20%  Similarity=0.097  Sum_probs=38.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK   56 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   56 (106)
                      .|..+++.+|++++|+|+++..++.....| .....    .+.|+++++||+|+.
T Consensus       114 ~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          114 EVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             HHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCEEEEEEECHHHH
T ss_pred             HHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCeEEEEECCCcc
Confidence            467789999999999999988777665432 23222    368999999999975

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=97.50  E-value=0.00019  Score=49.15  Aligned_cols=94  Identities=18%  Similarity=0.232  Sum_probs=58.5

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCc--------
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLENL--------   73 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~--------   73 (106)
                      ..++-+|++++|+|+...-...- ...+.....    .+.|.+++.||+|......   ..++.+.++....        
T Consensus        86 raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~  160 (638)
T 3j25_A           86 RSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELY  160 (638)
T ss_dssp             HHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSC
T ss_pred             HHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEee
Confidence            34677999999999986532221 112222222    3689999999999765422   2233333321100        


Q ss_pred             ------------------------------------------------CCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         74 ------------------------------------------------KDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        74 ------------------------------------------------~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                                                                      ...-.+++..||+++.|++.+++.+.+.+.
T Consensus       161 ~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p  238 (638)
T 3j25_A          161 PNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY  238 (638)
T ss_dssp             GGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred             ccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc
Confidence                                                            001246788899999999999998887553

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.47  E-value=0.00012  Score=44.93  Aligned_cols=50  Identities=10%  Similarity=-0.012  Sum_probs=30.1

Q ss_pred             hccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcC-CCCCeEEEEeeCCCCCC
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEE-LRDAILVILANKQDMKN   57 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~p~ilv~nK~D~~~   57 (106)
                      .+.+|++++|+|++.. ++.... .++..+..... ...+|+++|+||+|+..
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence            3479999999998753 233222 23333222111 01269999999999854

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=97.45  E-value=0.0014  Score=45.54  Aligned_cols=48  Identities=13%  Similarity=-0.011  Sum_probs=32.7

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      ..++-+|++++|+|+...-...... .+....+    .+.|.+++.||+|...
T Consensus       104 ~aLr~~DgavlvVDaveGV~~qT~~-v~~~a~~----~~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A          104 RSLRVLDGAVVVFCGTSGVEPQSET-VWRQANK----YGVPRIVYVNKMDRQG  151 (709)
T ss_dssp             HHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH----HTCCEEEEEECSSSTT
T ss_pred             HHHHHhCeEEEEEECCCCCchhHHH-HHHHHHH----cCCCeEEEEccccccC
Confidence            3466799999999998654333222 2333332    3689999999999754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.39  E-value=0.00014  Score=44.43  Aligned_cols=47  Identities=9%  Similarity=0.078  Sum_probs=28.6

Q ss_pred             cCCeEEEEEECCCcchHHHHH-HHHHHHhcCcC-CCCCeEEEEeeCCCCC
Q psy12794          9 NTDAIIYVVDSSDRDRIGISK-EELLAMLKEEE-LRDAILVILANKQDMK   56 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~p~ilv~nK~D~~   56 (106)
                      ++|++++|++++... +.... .++..+..... ....|+++|+||+|+.
T Consensus       116 ~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~  164 (262)
T 3def_A          116 TIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS  164 (262)
T ss_dssp             EECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred             CCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence            789999999987643 33222 22322222111 0125999999999984

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.10  E-value=0.012  Score=37.93  Aligned_cols=41  Identities=10%  Similarity=-0.057  Sum_probs=24.9

Q ss_pred             CCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794         42 RDAILVILANKQDMKN--CMSVAEVHRALGLENLKDRTFQIFKTSAKE   87 (106)
Q Consensus        42 ~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~   87 (106)
                      ..+|+++++|+.|..-  ......+.+...     ..+.+++.+||+.
T Consensus       198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~-----~~~~~~i~~sA~~  240 (363)
T 1jal_A          198 TLKPTMYIANVNEDGFENNPYLDRVREIAA-----KEGAVVVPVCAAI  240 (363)
T ss_dssp             TTSCEEEEEECCTTCSSSCHHHHHHHHHHH-----HTTCEEEEECHHH
T ss_pred             cCCcEEEEEecccccccccHHHHHHHHHHH-----HcCCCEEEechHH
Confidence            4599999999998542  122334444432     1234788888653

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=97.04  E-value=0.0023  Score=41.17  Aligned_cols=47  Identities=17%  Similarity=0.176  Sum_probs=28.2

Q ss_pred             CCCeEEEEeeCCCCC--C---cCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHH
Q psy12794         42 RDAILVILANKQDMK--N---CMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLND   93 (106)
Q Consensus        42 ~~~p~ilv~nK~D~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~   93 (106)
                      ..+|+++++||.|..  +   ......+.+...     ..+.+++.+||+...++.+
T Consensus       200 t~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~-----~~g~~vv~iSAk~E~el~e  251 (368)
T 2dby_A          200 TAKPVIYVANVAEEDLPDGRGNPQVEAVRRKAL-----EEGAEVVVVSARLEAELAE  251 (368)
T ss_dssp             GGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHH-----HHTCEEEEECHHHHHHHHT
T ss_pred             hcCCeEEeccccHHhhcccchhhHHHHHHHHHH-----HcCCeEEEeechhHHHHHH
Confidence            358999999999842  2   111233444332     1235899999987544443

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=95.14  E-value=0.026  Score=36.52  Aligned_cols=48  Identities=17%  Similarity=0.162  Sum_probs=31.6

Q ss_pred             hhccCCeEEEEEECCCcchH-HHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794          6 YYSNTDAIIYVVDSSDRDRI-GISKEELLAMLKEEELRDAILVILANKQDM   55 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   55 (106)
                      ..++||++++|+|+++|... +.+...+..+  ...+.++|.+++.||.|.
T Consensus       146 ~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          146 VARTCNLLFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             HHHHCSEEEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSS
T ss_pred             HHHhcCccccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhh
Confidence            46789999999999876332 2222223222  223456899999999995

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.03  E-value=0.18  Score=33.90  Aligned_cols=85  Identities=18%  Similarity=0.110  Sum_probs=49.2

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeE-EEEeeCCCCCCcCC-HHHHHHHhCCCCc------CCCc---
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAIL-VILANKQDMKNCMS-VAEVHRALGLENL------KDRT---   77 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~-~~~~~~~~~~~~~------~~~~---   77 (106)
                      .+|.+++|+|++........   ...+ ..    ..|+ .+|.||+|...... ...+...++..-.      ....   
T Consensus       213 ~pd~vllVvDa~~g~~~~~~---a~~~-~~----~~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~  284 (504)
T 2j37_W          213 QPDNIVYVMDASIGQACEAQ---AKAF-KD----KVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEP  284 (504)
T ss_dssp             CCSEEEEEEETTCCTTHHHH---HHHH-HH----HHCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEEC
T ss_pred             cCceEEEEEeccccccHHHH---HHHH-Hh----hcCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhc
Confidence            78999999999865332111   2222 11    1464 89999999764332 1233344432110      0001   


Q ss_pred             -eEEEEccccCCCC-hHHHHHHHHHH
Q psy12794         78 -FQIFKTSAKEGEG-LNDSMDWLSNA  101 (106)
Q Consensus        78 -~~~~~~sa~~~~~-v~~~~~~l~~~  101 (106)
                       .+...+|+..|.| +.++++++.+.
T Consensus       285 f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          285 FKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cCcceeeehhcCCCcHHHHHHHHHHH
Confidence             1234579999999 99999888754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=92.52  E-value=0.057  Score=35.53  Aligned_cols=39  Identities=8%  Similarity=0.080  Sum_probs=23.1

Q ss_pred             EEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794         13 IIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus        13 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      +.|+.|...+.+..++  .+.+.+.    .++|+++|.||+|...
T Consensus       152 v~fI~d~~~~l~~~Di--eilk~L~----~~~~vI~Vi~KtD~Lt  190 (427)
T 2qag_B          152 LYFIAPTGHSLKSLDL--VTMKKLD----SKVNIIPIIAKADAIS  190 (427)
T ss_dssp             EEEECCCC---CHHHH--HHHHHTC----SCSEEEEEESCGGGSC
T ss_pred             EEEEeCCCCCCCHHHH--HHHHHHh----hCCCEEEEEcchhccc
Confidence            5566666544333332  3444443    4689999999999654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=91.37  E-value=0.93  Score=29.35  Aligned_cols=51  Identities=18%  Similarity=0.161  Sum_probs=36.4

Q ss_pred             CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ...|.+++.||+|..   ..++.......       ..++.+|+..+.|++.+.+...+.+
T Consensus       248 ~~~p~i~v~nKid~~---~~eele~l~~~-------~~~~~is~~~e~gLd~Li~~~y~~L  298 (376)
T 4a9a_A          248 RYMPAIYVLNKIDSL---SIEELELLYRI-------PNAVPISSGQDWNLDELLQVMWDRL  298 (376)
T ss_dssp             EEECEEEEEECGGGS---CHHHHHHHTTS-------TTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hccceEEEEeccccc---CHHHHHHHhcc-------cchhhhhhhhcccchhHHHHHHHHc
Confidence            347999999999954   33344433321       1467899999999999988877665

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=91.34  E-value=0.64  Score=30.81  Aligned_cols=43  Identities=21%  Similarity=0.196  Sum_probs=26.1

Q ss_pred             ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      ..+|.+++|+|++........   ...+...    -.+..+|.||.|...
T Consensus       211 ~~pd~vlLVvDA~~gq~a~~~---a~~f~~~----~~i~gVIlTKlD~~~  253 (443)
T 3dm5_A          211 IHPHEVILVIDGTIGQQAYNQ---ALAFKEA----TPIGSIIVTKLDGSA  253 (443)
T ss_dssp             HCCSEEEEEEEGGGGGGHHHH---HHHHHHS----CTTEEEEEECCSSCS
T ss_pred             hcCceEEEEEeCCCchhHHHH---HHHHHhh----CCCeEEEEECCCCcc
Confidence            357889999998764332222   2222222    235578999999653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=86.61  E-value=1.9  Score=26.41  Aligned_cols=43  Identities=14%  Similarity=0.171  Sum_probs=27.8

Q ss_pred             cCCeEEEEEECC-CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          9 NTDAIIYVVDSS-DRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         9 ~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      .++++++++|.. .+-+..+.  .+...+..   . .++++|.+|.|...
T Consensus       111 Ral~~lllldep~~gL~~lD~--~~l~~L~~---~-~~vI~Vi~K~D~lt  154 (270)
T 3sop_A          111 RVHCCLYFISPTGHSLRPLDL--EFMKHLSK---V-VNIIPVIAKADTMT  154 (270)
T ss_dssp             SCCEEEEEECCCSSSCCHHHH--HHHHHHHT---T-SEEEEEETTGGGSC
T ss_pred             eeeeeeEEEecCCCcCCHHHH--HHHHHHHh---c-CcEEEEEeccccCC
Confidence            468889999965 33333332  23333443   3 89999999999654

>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}

Probab=81.77  E-value=4.7  Score=23.39  Aligned_cols=50  Identities=8%  Similarity=0.103  Sum_probs=29.6

Q ss_pred             hhhhhccCCeEEEEEECCCcc---hHHHHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRD---RIGISKEELLAMLKEEELRDAILVILANK   52 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~nK   52 (106)
                      |..-+..+|++|++...=+..   .+.....|+.+......+.+||+.++..=
T Consensus        61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S  113 (190)
T 3u7r_A           61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTS  113 (190)
T ss_dssp             HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEE
T ss_pred             HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeC
Confidence            455688999999987654432   23333333322122344578999998754

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=80.60  E-value=0.93  Score=29.60  Aligned_cols=20  Identities=15%  Similarity=0.172  Sum_probs=15.4

Q ss_pred             hhhhhccCCeEEEEEECCCc
Q psy12794          3 WRCYYSNTDAIIYVVDSSDR   22 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~   22 (106)
                      |..+++++|++++|+|+++.
T Consensus       110 ~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          110 FLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             HHHHHHTSSSEEEEEEC---
T ss_pred             HHHHHHhcCeEEEEEecCCC
Confidence            56789999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-18
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-16
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-16
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	9e-15
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-14
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-13
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-13
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-13
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	3e-10
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-10
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	8e-09
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-08
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-08
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	8e-08
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-07
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-07
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-07
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	4e-07
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	5e-07
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-07
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	6e-07
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	9e-07
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-06
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-06
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-06
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	6e-06
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	6e-06
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-05
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-05
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-05
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	4e-05
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-05
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	0.001
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	0.001
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	0.001
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	0.001
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	0.002
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	0.003

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 2e-18
 Identities = 41/102 (40%), Positives = 67/102 (65%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P WR YY+ T  +I+VVD +DRDRI  +++EL  ++ + E+RDAI++I ANKQD+ + M 
Sbjct: 71  PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 130

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
             E+   LGL  ++DR + +  + A  G+GL + + WL++  
Sbjct: 131 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 68.1 bits (165), Expect = 3e-16
 Identities = 51/105 (48%), Positives = 78/105 (74%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYY++T A+I+VVDS+D+DR+  + +EL  ML+EEEL+DA L++ ANKQD    +S
Sbjct: 76  PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS 135

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            +EV + L L  LKDR++ I  +SA +GEG+ + +DWL + +++ 
Sbjct: 136 ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 67.7 bits (164), Expect = 3e-16
 Identities = 42/101 (41%), Positives = 63/101 (62%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
           YWR Y+ NTD +IYV+DS+DR R   + +EL  +L+EE+L    ++I ANKQD+      
Sbjct: 76  YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 135

Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
           +E+   L L  ++DR +QI   SA  GEG+ D M+W+   +
Sbjct: 136 SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 9e-15
 Identities = 48/103 (46%), Positives = 70/103 (67%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
             W  YY+NT+ +I VVDS+DR+RI +++EEL  ML  E+LR A L+I ANKQD+K CM+
Sbjct: 74  SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 133

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
           VAE+ + L L ++KD  + I    A  GEGL   ++W+ + L+
Sbjct: 134 VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 7e-14
 Identities = 52/102 (50%), Positives = 74/102 (72%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           P WR Y+ NT  +I+VVDS+DR+R+  ++EEL+ ML E+ELRDA+L++ ANKQD+ N M+
Sbjct: 59  PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
            AE+   LGL +L+ R + I  T A  G+GL + +DWLSN L
Sbjct: 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 60.8 bits (146), Expect = 1e-13
 Identities = 41/104 (39%), Positives = 63/104 (60%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
            YWR Y+ +TD +I+VVDS+DR R+   + EL ++L EE L  A L+I ANKQD+   +S
Sbjct: 61  SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
              +  AL L++++   ++I   SA  GE L   +DWL + +  
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.9 bits (146), Expect = 1e-13
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
            W+ Y+   + I+++VD++D +R   ++ EL A+    EL+D   VIL NK D  N +S 
Sbjct: 60  LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE 119

Query: 62  AEVHRALGLENL-------KDRTFQIFKTSAKEGEGLNDSMDWLS 99
           AE+  ALGL N          R  ++F  S     G  ++  WLS
Sbjct: 120 AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 60.1 bits (144), Expect = 3e-13
 Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 12/113 (10%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
            W+ Y    + I+++VD +D +R+  SKEEL +++ +E + +  ++IL NK D    +S 
Sbjct: 73  VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE 132

Query: 62  AEVHRALGLEN------------LKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
             +    GL              L  R  ++F  S  + +G  +   W++  +
Sbjct: 133 ERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 3e-10
 Identities = 28/99 (28%), Positives = 55/99 (55%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
            W  Y     AI+Y+VD++D+++I  SK EL  +L + +L+   +++L NK+D+   +  
Sbjct: 63  MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE 122

Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
            E+   + L  ++DR    +  S KE + ++ ++ WL  
Sbjct: 123 KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 161

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 4e-10
 Identities = 70/104 (67%), Positives = 86/104 (82%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
           PYWRCYYSNTDA+IYVVDS DRDRIGISK EL+AML+EEELR AILV+ ANKQDM+  M+
Sbjct: 64  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 123

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
            +E+  +LGL  LKDR +QIFKTSA +G GL+++M+WL   L+ 
Sbjct: 124 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 8e-09
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
                YY     +I V D + RD        L  +       D + +++      K    
Sbjct: 71  TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV----GNKIDKE 126

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
             EV R  GL+  +  +    + SAK  +G+  + + L   + +
Sbjct: 127 NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 170

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.8 bits (113), Expect = 1e-08
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
                YY     II V D +D      + ++    + E    +A L+++ NK DM+  + 
Sbjct: 66  TITTAYYRGAMGIILVYDITDERTF-TNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV 124

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
            A+     G    K+      ++SAK  + +N+    L+  +Q+ +
Sbjct: 125 TADQ----GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.1 bits (111), Expect = 2e-08
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 4/106 (3%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
                YY     I+ V D ++       +  +   ++E    D   +IL N     +   
Sbjct: 70  TITTAYYRGAMGIMLVYDITNEKSFDNIRNWI-RNIEEHASADVEKMILGN---KCDVND 125

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
             +V +  G +   D   +  +TSAK    + ++   L+  ++  +
Sbjct: 126 KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 8e-08
 Identities = 16/104 (15%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
                YY +  A++ + D +++      +  L  + +  +   A++++          + 
Sbjct: 71  SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV- 129

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
              V R  G +  K+      +TSAK G  ++ +   ++  L++
Sbjct: 130 ---VKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 1e-07
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
               Y  N    I V    ++      K     +++ +      ++++ NK D+++    
Sbjct: 67  MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER-- 124

Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
            EV  + G    ++      +TSAK    +++    +   +
Sbjct: 125 -EVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-07
 Identities = 15/104 (14%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
              ++ +    + + D + +      +  +  +       +  +V++ NK D+ +   V 
Sbjct: 81  TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN 140

Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
           E       E         F+TSA  G+ +  +++ L + + K +
Sbjct: 141 ERQ---ARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 181

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 3e-07
 Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
               Y    +  + V   ++        +    + + ++  D  +V++ NK D+      
Sbjct: 67  MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126

Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
           +   +    +  +       +TSAK  +G+ D+   L   +++H
Sbjct: 127 SRQAQ----DLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 4e-07
 Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 4/104 (3%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
              R YY      + V D + R+         L   ++    + +++++ NK D+++   
Sbjct: 67  SITRSYYRGAAGALLVYDITRRETFN-HLTSWLEDARQHSSSNMVIMLIGNKSDLESRR- 124

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
             +V R  G    ++      +TSAK    + ++    +  + +
Sbjct: 125 --DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 166

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.3 bits (101), Expect = 5e-07
 Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
              YY      I + D ++ +     ++    +         +L++          +  +
Sbjct: 71  TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSS 130

Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
           E  R    +      F+ F+ SAK+   +  + + L + + +
Sbjct: 131 ERGR----QLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 6e-07
 Identities = 14/102 (13%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
              YY      + V D +       + E  L  L++    + +++++ NK D+++     
Sbjct: 70  TSAYYRGAVGALLVYDIAKHLTY-ENVERWLKELRDHADSNIVIMLVGNKSDLRHLR--- 125

Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
            V         +       +TSA +   + ++   +   + +
Sbjct: 126 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 167

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 6e-07
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
            R YY      + V D + R         L    +     + +++++ NK D++      
Sbjct: 70  TRSYYRGAAGALMVYDITRRSTYNHLSSWLT-DARNLTNPNTVIILIGNKADLEAQR--- 125

Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
           +V      +  ++      + SAK GE + D+    +  +
Sbjct: 126 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (100), Expect = 9e-07
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDR-IGISKEELLAMLKEEELRDA--ILVILANKQDMKNC 58
               + S+  A+++VVDS+   R +    E L  +L +         L+I  NKQD+   
Sbjct: 64  LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 123

Query: 59  MSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDS 94
            S   + + L  E    R  +    S  +      +
Sbjct: 124 KSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPA 159

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 1e-06
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 1/102 (0%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
                YY N  A + V D +       ++  +   L E+  +D I+ ++ NK DM     
Sbjct: 67  SLAPMYYRNAQAALVVYDVTKPQSFIKARHWV-KELHEQASKDIIIALVGNKIDMLQEGG 125

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
             +V R  G +  +++    F+TSAK GE +ND    +   +
Sbjct: 126 ERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 42.2 bits (98), Expect = 1e-06
 Identities = 13/102 (12%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
              Y+ + +  + V   ++ +    + +    +L+ +E  +   +++ NK D+++   V+
Sbjct: 69  RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 128

Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
                   +          +TSAK    ++     L   ++ 
Sbjct: 129 VEEAKNRADQWN---VNYVETSAKTRANVDKVFFDLMREIRA 167

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-06
 Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 4/102 (3%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
              R YY      + V D + R+        L            I++    K    +   
Sbjct: 69  SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREV 128

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
                        ++      +TSA  GE + ++    +  +
Sbjct: 129 TFLEASRF----AQENELMFLETSALTGENVEEAFVQCARKI 166

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 6e-06
 Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 3/104 (2%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
               Y       + V   +DR       +    +L+ ++  D  +V++ NK D+++   V
Sbjct: 70  MREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQV 129

Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
                +             F+ SAK    ++++ + L  A++K+
Sbjct: 130 PRSEAS---AFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 6e-06
 Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 2/103 (1%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
               Y  N      V   + +      ++    +L+ ++  D  ++++ NK D+++   V
Sbjct: 67  MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV 126

Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
            +           +  F   ++SAK    +N+    L   + +
Sbjct: 127 GKEQGQNLARQWCNCAF--LESSAKSKINVNEIFYDLVRQINR 167

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-05
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 3   WRCYYSNTDAII---YVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM 59
              +Y  +D  +    V DS     +   K+E +     +E      VIL NK D+    
Sbjct: 72  RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ 131

Query: 60  SVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
              E  +A   +N     +  F+TSAK+   +  + +     +
Sbjct: 132 VSTEEAQAWCRDNGD---YPYFETSAKDATNVAAAFEEAVRRV 171

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 3e-05
 Identities = 16/128 (12%), Positives = 43/128 (33%), Gaps = 24/128 (18%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
                + ++    +V+S + +R+  SK     ++     +++ +++  NK+D+     + 
Sbjct: 72  IMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMY 131

Query: 63  E-----------------------VHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLS 99
                                   +   + L    D+      T A + E +      + 
Sbjct: 132 SHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 191

Query: 100 NA-LQKHL 106
           +  LQ +L
Sbjct: 192 DTILQLNL 199

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-05
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
                Y  ++ A + V D ++ +    + + +   ++ E   D I++++ NK D+ +   
Sbjct: 64  SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWID-DVRTERGSDVIIMLVGNKTDLADKR- 121

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
             +V    G    K+      +TSAK G  +      ++ AL
Sbjct: 122 --QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 4e-05
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 4/103 (3%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
               YY +++  I V D +D D     K  +  + K       + ++       K     
Sbjct: 68  LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS 127

Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
            +   +      +    + + TSAK+ +G+ +    L   + +
Sbjct: 128 IQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 5e-05
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 1   PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
                YY    A I V D ++ +      +  +  L+ +   + ++ +  NK D+ N  +
Sbjct: 70  SLAPMYYRGAQAAIVVYDITNEESF-ARAKNWVKELQRQASPNIVIALSGNKADLANKRA 128

Query: 61  VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
           V             D +    +TSAK    +N+    ++  L K+
Sbjct: 129 VDFQEAQ---SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.3 bits (77), Expect = 0.001
 Identities = 14/104 (13%), Positives = 28/104 (26%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
               +Y   D  + V D +  +            L +   RD          +  +  + 
Sbjct: 67  LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 126

Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
               +              F+TSAKE   +  +   ++    K 
Sbjct: 127 QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 170

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (77), Expect = 0.001
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
             + YY N  A+++V D ++          +    +     D   +++ NK D+++ +  
Sbjct: 68  MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAI-- 125

Query: 62  AEVHRALGLENLKDRTFQIFKTSAK---EGEGLNDSMDWL 98
            +V   L  +     +  +F+TSAK   + + +      L
Sbjct: 126 -QVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.001
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 3/104 (2%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
               Y    +  + V   +DR       +    +L+ ++  +  ++++ NK D+ +   V
Sbjct: 69  MREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQV 128

Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
            +         LK       + SAK    ++ +   L   ++K 
Sbjct: 129 TQEEGQQLARQLK---VTYMEASAKIRMNVDQAFHELVRVIRKF 169

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.9 bits (76), Expect = 0.001
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
             + YY    A + V  ++DR+           ++ E    D    ++ NK D+ +   +
Sbjct: 67  ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQNKIDLLDDSCI 124

Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
                       K    + ++TS KE   +++   +L    +KHL
Sbjct: 125 KNEEAE---GLAKRLKLRFYRTSVKEDLNVSEVFKYL---AEKHL 163

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 0.002
 Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 3   WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
            + YY + +A+I   D +  +      E L  + +    +   +++       +      
Sbjct: 71  TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE--- 127

Query: 63  EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
            V +    E  + +     +TSAKE + +      L+  L
Sbjct: 128 -VSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.1 bits (74), Expect = 0.003
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 2   YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
               Y    D  + V   +D+            +L+ ++     ++++ANK D+ +   V
Sbjct: 68  MREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKV 127

Query: 62  AEVHRALGLENLKDRTFQIFKTSAKEGE-GLNDSMDWLSNALQK 104
                    E          +TSAK+    ++ +   L   +++
Sbjct: 128 TRDQGK---EMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.92
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.9
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.89
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.89
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.88
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.86
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.86
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.85
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.85
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.84
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.84
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.83
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.83
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.82
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.82
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.82
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.82
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.81
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.81
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.81
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.8
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.8
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.79
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.78
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.78
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.77
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.76
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.76
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.76
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.76
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.75
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.71
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.7
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.53
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.5
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.5
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.49
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.48
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.46
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.42
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.42
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.41
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.35
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.35
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.34
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.29
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.26
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.22
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.13
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.11
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.1
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.96
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.89
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.87
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.7
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.67
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.59
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.54
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.3
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.24
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.18
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.09
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.94
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.9
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.84
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.78
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.75
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.59
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.65
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.13
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.27
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	91.65
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	89.51
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	86.97

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.92  E-value=7.6e-24  Score=122.47  Aligned_cols=105  Identities=49%  Similarity=0.924  Sum_probs=93.3

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++|+.|+++++++++|+|.+++.++.+...++.+.+......+.|+++++||+|+.......++.+.++.......++++
T Consensus        76 ~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  155 (182)
T d1moza_          76 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI  155 (182)
T ss_dssp             TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE
T ss_pred             hhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEE
Confidence            47899999999999999999999999998888888877666789999999999998777788888888766666678899


Q ss_pred             EEccccCCCChHHHHHHHHHHHhhc
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++|||++|+|++++|++|.+.+.++
T Consensus       156 ~e~SA~~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         156 VASSAIKGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             EEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHc
Confidence            9999999999999999999998754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.90  E-value=4.9e-23  Score=118.22  Aligned_cols=101  Identities=40%  Similarity=0.821  Sum_probs=89.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      .|..++++++++++|+|.++..++..+..++...++.....+.|+++++||+|+++.....++.+.++.......++.++
T Consensus        72 ~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  151 (173)
T d1e0sa_          72 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ  151 (173)
T ss_dssp             HHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred             HHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEE
Confidence            58889999999999999999999999998898888876667899999999999988777888888877655566788999


Q ss_pred             EccccCCCChHHHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +|||++|+||+++|++|.+.+
T Consensus       152 e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         152 PSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHC
T ss_pred             EeeCCCCcCHHHHHHHHHHhc
Confidence            999999999999999998875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.89  E-value=9.5e-23  Score=117.10  Aligned_cols=100  Identities=42%  Similarity=0.771  Sum_probs=86.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      .|..|++++|++++|+|++++.++.+...++.+........++|+++++||+|+.+.....++.+.+.........++++
T Consensus        76 ~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (176)
T d1fzqa_          76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQ  155 (176)
T ss_dssp             HHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred             HHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEE
Confidence            58899999999999999999999999988888887776667899999999999987777777777766544455678999


Q ss_pred             EccccCCCChHHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~  101 (106)
                      +|||++|+|++++|+||++.
T Consensus       156 ~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         156 SCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             ECCTTTCTTHHHHHHHHHHT
T ss_pred             EEeCCCCCCHHHHHHHHHhc
Confidence            99999999999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.89  E-value=5.4e-22  Score=112.90  Aligned_cols=105  Identities=39%  Similarity=0.701  Sum_probs=89.9

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      +.|..+++.++++++++|.++..++.+...++.+.+.+....+.|+++|+||+|+.+.....+..+.+.........+++
T Consensus        61 ~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  140 (165)
T d1ksha_          61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRI  140 (165)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred             hHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEE
Confidence            36888999999999999999999999988888888877666789999999999998776777777766544445567899


Q ss_pred             EEccccCCCChHHHHHHHHHHHhhc
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++|||++|+|++++++||.+++.+|
T Consensus       141 ~~~Sa~~g~gv~e~~~~l~~~i~~r  165 (165)
T d1ksha_         141 QGCSAVTGEDLLPGIDWLLDDISSR  165 (165)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999988764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.88  E-value=4.8e-22  Score=113.17  Aligned_cols=102  Identities=27%  Similarity=0.569  Sum_probs=90.1

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      +.|.+|+.+++++++|+|++++.++.....++..++......+.|+++++||.|+.......++.+.++...+...++++
T Consensus        62 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  141 (164)
T d1zd9a1          62 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICC  141 (164)
T ss_dssp             TTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred             ccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEE
Confidence            46899999999999999999999999999888888887666789999999999998777777888888766666678899


Q ss_pred             EEccccCCCChHHHHHHHHHHH
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +++||++|.|++++|+||.+.+
T Consensus       142 ~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         142 YSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTC
T ss_pred             EEEeCcCCcCHHHHHHHHHHcc
Confidence            9999999999999999998864

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.8e-22  Score=114.59  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=77.8

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|+.|++++|++++|||++++.+++.+..|+.+........+.|+++|+||+|+...  ....+..+..     ...++
T Consensus        63 ~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~  137 (168)
T d2gjsa1          63 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA-----VVFDC  137 (168)
T ss_dssp             -CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTS
T ss_pred             eecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHH-----HhcCC
Confidence            3688999999999999999999999999988877665444456899999999998653  2344433332     22356


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++|||++|.|++++|+.+++.+..
T Consensus       138 ~~~e~Sak~~~~v~~~f~~l~~~i~~  163 (168)
T d2gjsa1         138 KFIETSAALHHNVQALFEGVVRQIRL  163 (168)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            89999999999999999999987754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.3e-22  Score=114.13  Aligned_cols=99  Identities=13%  Similarity=0.163  Sum_probs=79.9

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|+.|++++|++++|||++++.+++.+..|+....+.....+.|+++|+||+|+...  ....+..+...    +..++
T Consensus        66 ~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~----~~~~~  141 (167)
T d1c1ya_          66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNC  141 (167)
T ss_dssp             THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSC
T ss_pred             ccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH----HhCCC
Confidence            3578899999999999999999999999998887766444467899999999998653  33444444332    22357


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++|||++|+||+++|++|++.+.
T Consensus       142 ~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         142 AFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            8999999999999999999998875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.3e-21  Score=112.20  Aligned_cols=99  Identities=17%  Similarity=0.243  Sum_probs=79.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++..|++++|++++|||++++.++..+..|+..........+.|+++|+||+|+...  ...++..+..     ...+++
T Consensus        70 ~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~~  144 (172)
T d2g3ya1          70 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA-----VVFDCK  144 (172)
T ss_dssp             HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCE
T ss_pred             cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHH-----HHcCCe
Confidence            356789999999999999999999999988877776555567999999999998653  3444443332     223568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++||++|.|++++|+.|++.+..+
T Consensus       145 ~~e~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         145 FIETSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHHc
Confidence            99999999999999999999988654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.4e-21  Score=111.80  Aligned_cols=100  Identities=14%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++++.|++++|++++|||++++.+|..+..|+.+..+.....+.|+++++||+|+...  ...+++.+...     ..++
T Consensus        67 ~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~-----~~~~  141 (169)
T d1x1ra1          67 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNI  141 (169)
T ss_dssp             SSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTC
T ss_pred             cchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHH-----HcCC
Confidence            3678899999999999999999999999988888766544567899999999998754  34455554442     2356


Q ss_pred             EEEEccccCCC-ChHHHHHHHHHHHhhc
Q psy12794         79 QIFKTSAKEGE-GLNDSMDWLSNALQKH  105 (106)
Q Consensus        79 ~~~~~sa~~~~-~v~~~~~~l~~~~~~~  105 (106)
                      +++++||+++. ||+++|..|++.+.+|
T Consensus       142 ~~~e~Sak~~~~nV~~~F~~l~~~i~~~  169 (169)
T d1x1ra1         142 PYIETSAKDPPLNVDKTFHDLVRVIRQQ  169 (169)
T ss_dssp             CEEEEBCSSSCBSHHHHHHHHHHHHHHC
T ss_pred             EEEEEcCCCCCcCHHHHHHHHHHHHHhC
Confidence            89999999986 9999999999998765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.2e-21  Score=111.27  Aligned_cols=100  Identities=18%  Similarity=0.253  Sum_probs=80.4

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|..|++++|++++|||++++.+++.+..|+..+.+.....+.|+++|+||+|+...  ....+..+...     ..++
T Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~  143 (173)
T d2fn4a1          69 AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA-----SHHV  143 (173)
T ss_dssp             CCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTC
T ss_pred             cccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHH-----hcCC
Confidence            3678899999999999999999999999988877765444467899999999998653  33444444332     2456


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++|||++|.||+++|+.+++.+.++
T Consensus       144 ~~~e~Sak~g~gv~e~f~~l~~~i~k~  170 (173)
T d2fn4a1         144 AYFEASAKLRLNVDEAFEQLVRAVRKY  170 (173)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            899999999999999999999988653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.85  E-value=1.4e-21  Score=111.76  Aligned_cols=99  Identities=15%  Similarity=0.249  Sum_probs=80.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++..+++++|++++|+|++++.++..+..|+.++.+.....+.|+++|+||+|+.+.  ...+++.+...     ..+++
T Consensus        68 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~  142 (168)
T d1u8za_          68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVN  142 (168)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred             hhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHH-----HcCCe
Confidence            467899999999999999999999999888877765444467899999999998653  34455544432     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++|||++|.|++++|++|++.+..|
T Consensus       143 ~~e~Sak~g~gv~e~f~~l~~~i~~r  168 (168)
T d1u8za_         143 YVETSAKTRANVDKVFFDLMREIRAR  168 (168)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHHHCc
Confidence            99999999999999999999988754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.5e-21  Score=111.80  Aligned_cols=97  Identities=19%  Similarity=0.233  Sum_probs=78.4

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ++|+.|++++|++++|||++++.+++.+..|+....+..  .+.|+++|+||+|+.......+.....     ...++++
T Consensus        67 ~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~-----~~~~~~~  139 (170)
T d1i2ma_          67 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQY  139 (170)
T ss_dssp             SCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSHHHH-----SSCSSEE
T ss_pred             eecchhcccccchhhccccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHHHHH-----HHcCCEE
Confidence            468899999999999999999999999998887766542  479999999999987643322222222     3356799


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++||++|.|++++|++|++.+.+
T Consensus       140 ~e~Sak~~~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_         140 YDISAKSNYNFEKPFLWLARKLIG  163 (170)
T ss_dssp             EEEBTTTTBTTTHHHHHHHHHHHT
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHcc
Confidence            999999999999999999988754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4e-21  Score=111.20  Aligned_cols=99  Identities=12%  Similarity=0.236  Sum_probs=80.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|+.|++++|++++|||++++.+++.+..|+............|+++|+||+|+...  ....++.+...     ..+++
T Consensus        80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~-----~~~~~  154 (186)
T d2f7sa1          80 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KYGIP  154 (186)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCC
T ss_pred             HHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHH-----HcCCE
Confidence            688899999999999999999999999888777666555566899999999998653  34444444432     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++|||++|.|++++|+++.+.+.++
T Consensus       155 ~~e~Sak~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         155 YFETSAATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             EEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999987654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.2e-21  Score=110.61  Aligned_cols=98  Identities=16%  Similarity=0.152  Sum_probs=79.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++..+++++|++++|||++++.++..+..|+..+.+.....+.|+++++||+|+...  ...+++.+..     +..+++
T Consensus        68 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a-----~~~~~~  142 (167)
T d1xtqa1          68 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAA  142 (167)
T ss_dssp             CCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCE
T ss_pred             ccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHH-----HHcCCE
Confidence            567899999999999999999999999988877766544467899999999998653  3444444433     223568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      |++|||++|.||+++|+.+++.+.+
T Consensus       143 ~~e~Sak~~~~v~~~f~~li~~~~K  167 (167)
T d1xtqa1         143 FLESSAKENQTAVDVFRRIILEAEK  167 (167)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHHHhcC
Confidence            9999999999999999999988753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.8e-21  Score=109.25  Aligned_cols=98  Identities=18%  Similarity=0.243  Sum_probs=74.4

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--------------HHHHHH
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS--------------VAEVHR   66 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--------------~~~~~~   66 (106)
                      .+|+.|++++|++++|||++++.+|+....++........ .+.|+++++||+|+.....              ..+..+
T Consensus        65 ~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~  143 (177)
T d1kmqa_          65 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD  143 (177)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred             ccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHH
Confidence            3688999999999999999999999988877766665432 4689999999999864321              112222


Q ss_pred             HhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ...    .....+|++|||++|.||+++|+.+++.+.
T Consensus       144 ~a~----~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         144 MAN----RIGAFGYMECSAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             HHH----HTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHH----HcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            111    112358999999999999999999998764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9e-21  Score=108.46  Aligned_cols=99  Identities=14%  Similarity=0.213  Sum_probs=80.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++..+++++|++++|+|++++.++..+..|+.+........+.|+++|+||+|+...  ....+..+...     ..+++
T Consensus        69 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~  143 (171)
T d2erya1          69 MREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLAR-----QLKVT  143 (171)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHH-----HTTCE
T ss_pred             cccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHH-----HcCCE
Confidence            456789999999999999999999999988877766544467899999999998653  44555555442     34568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++|||++|.||+++|..|++.+.++
T Consensus       144 ~~e~Sak~~~~i~e~f~~l~~~i~k~  169 (171)
T d2erya1         144 YMEASAKIRMNVDQAFHELVRVIRKF  169 (171)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            99999999999999999999988653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=8.6e-21  Score=107.86  Aligned_cols=93  Identities=17%  Similarity=0.261  Sum_probs=74.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      .|+.|++++|++++|||++++.+++.+..|+.++.+.....+.|+++|+||+|+...  ...+++.+...     ..+++
T Consensus        68 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~  142 (165)
T d1z06a1          68 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMP  142 (165)
T ss_dssp             THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCC
T ss_pred             cceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHH-----HCCCE
Confidence            478899999999999999999999999888887766555567899999999998653  44555554432     34568


Q ss_pred             EEEccccC---CCChHHHHHHHH
Q psy12794         80 IFKTSAKE---GEGLNDSMDWLS   99 (106)
Q Consensus        80 ~~~~sa~~---~~~v~~~~~~l~   99 (106)
                      +++|||++   +.||+++|++|+
T Consensus       143 ~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         143 LFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             EEECCSSSGGGGSCHHHHHHHHC
T ss_pred             EEEEecccCCcCcCHHHHHHHhC
Confidence            99999997   459999999874

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.4e-21  Score=108.02  Aligned_cols=97  Identities=23%  Similarity=0.274  Sum_probs=76.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|+.|++++|++++|||++++.+|+.+..|+...... .....|+++++||+|+...  ....++.+...     ..+++
T Consensus        68 ~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~-----~~~~~  141 (167)
T d1z08a1          68 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAK  141 (167)
T ss_dssp             --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred             cchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccc-cccccceeeeccccccccccccchHHHHHHHH-----HcCCe
Confidence            6788999999999999999999999998877655432 2246899999999998653  34555554442     24568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++|||++|.||+++|++|++.+.+
T Consensus       142 ~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         142 HYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             EEEEecCCCcCHHHHHHHHHHHHhh
Confidence            9999999999999999999988754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.6e-21  Score=108.08  Aligned_cols=98  Identities=14%  Similarity=0.210  Sum_probs=77.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      .+..++++++++++|+|.+++.+++.+..|+..........+.|+++|+||+|+... ....++.+..     +..++++
T Consensus        67 ~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~  141 (166)
T d1ctqa_          67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA-----RSYGIPY  141 (166)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCE
T ss_pred             chhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHH-----HHhCCeE
Confidence            356789999999999999999999999888777665444457899999999998654 3344444333     2234689


Q ss_pred             EEccccCCCChHHHHHHHHHHHhh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++|||++|.||+++|.++++.+.+
T Consensus       142 ~e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         142 IETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHh
Confidence            999999999999999999998865

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.4e-20  Score=107.98  Aligned_cols=98  Identities=17%  Similarity=0.160  Sum_probs=74.4

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--------------CHHHHHH
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--------------SVAEVHR   66 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------------~~~~~~~   66 (106)
                      ++|..|++++|++++|||++++.+|+....++....+.. ..+.|+++|+||+|+.+..              ..++..+
T Consensus        72 ~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~  150 (185)
T d2atxa1          72 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK  150 (185)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH
T ss_pred             hhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHH
Confidence            368889999999999999999999998877776666543 2578999999999986521              2222222


Q ss_pred             HhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ...    ....+.|++|||++|.||+++|+.+++.+.
T Consensus       151 ~a~----~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         151 LAK----EIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             HHH----HHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHH----HcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence            211    112368999999999999999999988764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.4e-20  Score=107.06  Aligned_cols=96  Identities=19%  Similarity=0.286  Sum_probs=76.6

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++++.++++++++++|+|++++.+++.+..|+.+..+..  .+.|+++|+||+|+.+.  ....++.+..     +..++
T Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~-----~~~~~  138 (164)
T d1z2aa1          66 AITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKL  138 (164)
T ss_dssp             CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTC
T ss_pred             hhhhhhhccCceEEEEEeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHH-----HHcCC
Confidence            357789999999999999999999999888877765432  46899999999998653  3444444433     22356


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++++||++|.|++++|++|++.+.
T Consensus       139 ~~~e~Sak~g~~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         139 RFYRTSVKEDLNVSEVFKYLAEKHL  163 (164)
T ss_dssp             EEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             EEEEeccCCCcCHHHHHHHHHHHHh
Confidence            8999999999999999999998775

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.82  E-value=2.4e-19  Score=100.83  Aligned_cols=101  Identities=50%  Similarity=0.915  Sum_probs=86.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      .+..++++++++++++|.+++.++.....++.+.+........|+++++||.|+.......++.........+..+++++
T Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~  139 (160)
T d1r8sa_          60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQ  139 (160)
T ss_dssp             HHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEE
T ss_pred             hhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEE
Confidence            46788999999999999999999999888888888877777899999999999987767777776665544456678999


Q ss_pred             EccccCCCChHHHHHHHHHHH
Q psy12794         82 KTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +|||++|+|++++|++|.+++
T Consensus       140 ~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         140 ATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHC
T ss_pred             EeECCCCCCHHHHHHHHHhcC
Confidence            999999999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.3e-20  Score=105.80  Aligned_cols=99  Identities=15%  Similarity=0.234  Sum_probs=78.1

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|+.+++++|++++|+|++++.+++.+..++....+. ...+.|+++|+||+|+...  ....+......     ..++
T Consensus        67 ~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~-----~~~~  140 (173)
T d2a5ja1          67 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGL  140 (173)
T ss_dssp             CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTC
T ss_pred             hHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHHH-----HcCC
Confidence            46889999999999999999999999999888766543 2357899999999997543  33333443332     2356


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++++||++|.||+++|..+++.+.++
T Consensus       141 ~~~e~Sa~tg~~V~e~f~~i~~~i~~~  167 (173)
T d2a5ja1         141 IFMETSAKTACNVEEAFINTAKEIYRK  167 (173)
T ss_dssp             EEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence            899999999999999999999877543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=5e-20  Score=104.98  Aligned_cols=96  Identities=18%  Similarity=0.198  Sum_probs=77.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..|+++++++++|||++++.++..+..|+...... ...+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~  142 (167)
T d1z0ja1          69 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAI  142 (167)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred             HHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHHHH-----HcCCE
Confidence            5788999999999999999999999998877655443 2357899999999998653  34444444432     24578


Q ss_pred             EEEccccCCCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      |++|||++|.||+++|.+|++.++
T Consensus       143 ~~e~SAk~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         143 FVETSAKNAININELFIEISRRIP  166 (167)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             EEEEecCCCCCHHHHHHHHHHhCC
Confidence            999999999999999999998874

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.2e-20  Score=104.94  Aligned_cols=96  Identities=21%  Similarity=0.291  Sum_probs=77.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|+.++++++++++|+|++++.++..+..|+....... ..+.|+++|+||+|+.+.  ....+..+...     ..+++
T Consensus        65 ~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~  138 (164)
T d1yzqa1          65 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNVM  138 (164)
T ss_dssp             GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred             chHHHhhccceEEEeeccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHHHHH-----HcCCE
Confidence            57889999999999999999999999998887765432 247899999999998643  34444444432     24568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++|||++|.||+++|++|++.+.
T Consensus       139 ~~e~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         139 FIETSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHSC
T ss_pred             EEEecCCCCcCHHHHHHHHHHhhC
Confidence            999999999999999999998874

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.82  E-value=4.1e-19  Score=101.60  Aligned_cols=102  Identities=47%  Similarity=0.827  Sum_probs=87.2

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      .|..++..++++++++|.++..++.....+...........+.|+++|+||+|++......++.+.+........+++++
T Consensus        75 ~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  154 (177)
T d1zj6a1          75 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ  154 (177)
T ss_dssp             GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred             chhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEE
Confidence            57788999999999999999988888776666666666667899999999999987777777888777655566788999


Q ss_pred             EccccCCCChHHHHHHHHHHHh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++||++|+|+++++++|.++++
T Consensus       155 ~~Sa~tg~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         155 ACCALTGEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHC
T ss_pred             EEeCCCCCCHHHHHHHHHHHhC
Confidence            9999999999999999998874

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1e-19  Score=104.26  Aligned_cols=99  Identities=18%  Similarity=0.193  Sum_probs=73.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhc---CcCCCCCeEEEEeeCCCCCCc---CCHHHHHHHhCCCCcCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLK---EEELRDAILVILANKQDMKNC---MSVAEVHRALGLENLKD   75 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK~D~~~~---~~~~~~~~~~~~~~~~~   75 (106)
                      +|..|++.++++++++|++++.++..+..|+.++..   .....+.|+++++||+|+.+.   ....+..+...    ..
T Consensus        68 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~----~~  143 (175)
T d1ky3a_          68 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SL  143 (175)
T ss_dssp             ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HT
T ss_pred             HHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHH----Hc
Confidence            567889999999999999999999988877766543   222346899999999998653   33344433322    12


Q ss_pred             CceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         76 RTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ..+++++|||++|.||+++|++|++.+.+
T Consensus       144 ~~~~~~e~SA~~g~gv~e~f~~l~~~~l~  172 (175)
T d1ky3a_         144 GDIPLFLTSAKNAINVDTAFEEIARSALQ  172 (175)
T ss_dssp             TSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            24679999999999999999999987654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.3e-20  Score=107.45  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=76.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++..|++++|++++|||++++.++..+..|+..........+.|+++|+||+|+...  ....+......     ..+++
T Consensus        67 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~  141 (167)
T d1kaoa_          67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCP  141 (167)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSC
T ss_pred             chHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHH-----HcCCe
Confidence            466789999999999999999999999988877665444467899999999998653  33333333321     23468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++|||++|.|++++|+.+++++.
T Consensus       142 ~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         142 FMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcCHHHHHHHHHHHHc
Confidence            999999999999999999998763

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-20  Score=108.04  Aligned_cols=99  Identities=17%  Similarity=0.166  Sum_probs=76.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc-CCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE-ELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++..|++++|++++|||++++.++..+..|+..+.... ...+.|+++|+||+|+...  ....++.+...     ..++
T Consensus        66 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~-----~~~~  140 (171)
T d2erxa1          66 MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-----TWKC  140 (171)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTC
T ss_pred             cccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHH-----HcCC
Confidence            46678999999999999999999999888776655422 1256899999999998543  34444444332     2356


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++|||++|.||+++|+.|++.+.+|
T Consensus       141 ~~~e~Sak~~~~v~e~f~~l~~~~~~~  167 (171)
T d2erxa1         141 AFMETSAKLNHNVKELFQELLNLEKRR  167 (171)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred             eEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            899999999999999999999877654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.9e-20  Score=104.18  Aligned_cols=97  Identities=21%  Similarity=0.312  Sum_probs=77.0

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|+.|+++++++++++|.+++.++.....++....+.. ..+.|+++++||+|+...  ...+...+..     +..+++
T Consensus        71 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~-----~~~~~~  144 (170)
T d1r2qa_          71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLL  144 (170)
T ss_dssp             GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCE
T ss_pred             hHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhcc-CCCceEEeecccccccccccccHHHHHHHH-----HhcCCE
Confidence            68889999999999999999999999888777665432 257899999999998653  3444444333     234579


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++|||++|.||+++|+.|++.+.+
T Consensus       145 ~~e~SAk~g~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         145 FMETSAKTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999987653

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=9.4e-20  Score=104.02  Aligned_cols=98  Identities=16%  Similarity=0.283  Sum_probs=76.8

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|+.|++++|++|+|+|++++.++.....++..... ....+.|+++++||+|+...  ....+..+..     +..+++
T Consensus        70 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~-----~~~~~~  143 (169)
T d3raba_          70 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT-YSWDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFE  143 (169)
T ss_dssp             HHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHH-HCCSCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCE
T ss_pred             HHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhc-ccCCcceEEEEEeecccccccccchhhhHHHH-----HHcCCE
Confidence            578899999999999999999999888877755433 23357899999999998653  2344443332     223568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      +++|||++|.|++++|+++++.+.+|
T Consensus       144 ~~e~Sak~g~gv~e~f~~l~~~i~ek  169 (169)
T d3raba_         144 FFEASAKDNINVKQTFERLVDVICEK  169 (169)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHTC
T ss_pred             EEEecCCCCcCHHHHHHHHHHHHhhC
Confidence            99999999999999999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.8e-19  Score=102.14  Aligned_cols=99  Identities=19%  Similarity=0.240  Sum_probs=81.2

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++|+.+++++|++++|+|++++.++.....++.++.........|+++++||.|.... ....+..+..     +..+++
T Consensus        71 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~-----~~~~~~  145 (177)
T d1x3sa1          71 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSML  145 (177)
T ss_dssp             CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCE
T ss_pred             HHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHH-----HHCCCE
Confidence            4789999999999999999999999999988888776655567999999999997653 3444444433     234568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|+++++.+.+
T Consensus       146 ~~e~Sa~tg~gv~e~f~~l~~~l~~  170 (177)
T d1x3sa1         146 FIEASAKTCDGVQCAFEELVEKIIQ  170 (177)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHcc
Confidence            9999999999999999999988764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-19  Score=103.69  Aligned_cols=98  Identities=16%  Similarity=0.229  Sum_probs=74.1

Q ss_pred             hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEE
Q psy12794          3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQI   80 (106)
Q Consensus         3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~   80 (106)
                      ...|+++++++++|||++++.++..+..++..........+.|+++|+||+|+...  ...+++.+...     ..+++|
T Consensus        66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~-----~~~~~~  140 (168)
T d2atva1          66 REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAF  140 (168)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEE
T ss_pred             chhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHH-----HhCCeE
Confidence            34689999999999999999999988765543333233357899999999998643  34555544432     235689


Q ss_pred             EEccccCCCC-hHHHHHHHHHHHhhc
Q psy12794         81 FKTSAKEGEG-LNDSMDWLSNALQKH  105 (106)
Q Consensus        81 ~~~sa~~~~~-v~~~~~~l~~~~~~~  105 (106)
                      ++|||++|.| |+++|..|++.+.+|
T Consensus       141 ~e~Saktg~gnV~e~F~~l~~~i~~~  166 (168)
T d2atva1         141 YECSACTGEGNITEIFYELCREVRRR  166 (168)
T ss_dssp             EECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEccccCCcCHHHHHHHHHHHHHHh
Confidence            9999999984 999999999887643

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.7e-19  Score=104.80  Aligned_cols=99  Identities=12%  Similarity=0.163  Sum_probs=75.1

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHHH
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVHR   66 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~~   66 (106)
                      ++|+.|++++|++++|||++++.||+.+..++....... ..+.|+++++||+|+.+.              ...++..+
T Consensus        66 ~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  144 (191)
T d2ngra_          66 RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK  144 (191)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred             hhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHH
Confidence            367889999999999999999999999987766655532 257899999999998542              12222222


Q ss_pred             HhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ...    ...+.+|+++||++|.||+++|+.++..+.+
T Consensus       145 ~~~----~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         145 LAR----DLKAVKYVECSALTQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             HHH----HTTCSCEEECCTTTCTTHHHHHHHHHHHHTS
T ss_pred             HHH----HcCCCeEEEEeCCCCcCHHHHHHHHHHHHhc
Confidence            221    1134689999999999999999999887643

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-19  Score=104.90  Aligned_cols=97  Identities=11%  Similarity=0.131  Sum_probs=72.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH--------------HHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV--------------AEVHRA   67 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------------~~~~~~   67 (106)
                      ++..|++++|++++|||++++.+|+.+..++....... ..+.|+++|+||+|+......              .+....
T Consensus        69 ~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (183)
T d1mh1a_          69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM  147 (183)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             hhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHH
Confidence            57789999999999999999999998877666555432 256899999999997543111              111111


Q ss_pred             hCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         68 LGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        68 ~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ..    ....++|++|||++|.||+++|+.+++.+.
T Consensus       148 a~----~~~~~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         148 AK----EIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             HH----HTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             HH----HcCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence            11    113468999999999999999999998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-19  Score=103.83  Aligned_cols=97  Identities=21%  Similarity=0.225  Sum_probs=75.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|+.|+++++++++|+|.+++.++.....++....+. .....|+++++||+|+...  ....++.+..     +..+++
T Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~-----~~~~~~  143 (171)
T d2ew1a1          70 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMY  143 (171)
T ss_dssp             HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCC
T ss_pred             HHHHHHhccceEEEeeecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHHHH-----HhCCCE
Confidence            5888999999999999999999999888877665443 2256899999999998653  3344444333     223468


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++|||++|.||+++|.++++.+..
T Consensus       144 ~~~~SAktg~gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         144 YLETSAKESDNVEKLFLDLACRLIS  168 (171)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999877654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.1e-19  Score=101.04  Aligned_cols=95  Identities=18%  Similarity=0.280  Sum_probs=74.9

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|++++.++.....++..... ......|+++++||+|+...  ....+..+...     ..+++
T Consensus        69 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~  142 (166)
T d1z0fa1          69 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN-LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLL  142 (166)
T ss_dssp             HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred             HHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHh-hccccceEEEEcccccchhhcccHHHHHHHHHH-----HcCCE
Confidence            577899999999999999999999988877766543 23357899999999998543  33344444432     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      +++|||++|.||+++|+.+++.+
T Consensus       143 ~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         143 FLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998865

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.2e-19  Score=100.80  Aligned_cols=97  Identities=12%  Similarity=0.239  Sum_probs=75.6

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|..++++++++++|||.+++.++.....++....+... .+.|+++|+||+|+.+.  ..........     ...+.
T Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~  141 (175)
T d2f9la1          68 RITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNNL  141 (175)
T ss_dssp             CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTC
T ss_pred             HHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcC-CCCcEEEEEeeecccccccchHHHHHHhh-----cccCc
Confidence            3678899999999999999999999999888877655322 56899999999998753  2322222222     22356


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++|||++|.|++++|+++.+.+.
T Consensus       142 ~~~e~Sa~~g~~i~e~f~~l~~~i~  166 (175)
T d2f9la1         142 SFIETSALDSTNVEEAFKNILTEIY  166 (175)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             eEEEEecCCCcCHHHHHHHHHHHHH
Confidence            8999999999999999999988764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.7e-19  Score=102.42  Aligned_cols=98  Identities=17%  Similarity=0.284  Sum_probs=76.8

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|+.++++++++++|+|++++.++..+..++....... ..+.|+++++||+|+...  .......+..     ...+++
T Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~  143 (174)
T d2bmea1          70 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA-----QENELM  143 (174)
T ss_dssp             HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCE
T ss_pred             hHHHHhhhCCEEEEEEecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHHH-----HhCCCE
Confidence            58889999999999999999999998888777665432 257899999999997543  2333333332     234578


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++||++|.|++++|+++.+.+.++
T Consensus       144 ~~e~Sak~~~gi~e~f~~l~~~i~~~  169 (174)
T d2bmea1         144 FLETSALTGENVEEAFVQCARKILNK  169 (174)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCcCHHHHHHHHHHHHHHH
Confidence            99999999999999999999887654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=5.7e-19  Score=101.07  Aligned_cols=99  Identities=18%  Similarity=0.223  Sum_probs=71.7

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|+.+++++|++|+|+|++++.++..+..++..+... ...+.|+++++||.|+...  ....+.....     ...++
T Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~-----~~~~~  143 (173)
T d2fu5c1          70 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGI  143 (173)
T ss_dssp             --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTC
T ss_pred             HHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHHHH-----HhcCC
Confidence            36788999999999999999999999988877665432 3367999999999998653  2333333332     22357


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++++|||++|.|++++|++|++.+..+
T Consensus       144 ~~~e~Sa~~g~gv~e~f~~l~~~i~~k  170 (173)
T d2fu5c1         144 KFMETSAKANINVENAFFTLARDIKAK  170 (173)
T ss_dssp             EEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            899999999999999999999988754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.7e-18  Score=99.05  Aligned_cols=98  Identities=17%  Similarity=0.217  Sum_probs=76.3

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhc---CcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLK---EEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~   77 (106)
                      .|..++..++++++++|.+++.+++.+..|+.++..   .....+.|+++|+||+|+.+. ....++.+...    +...
T Consensus        71 ~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~----~~~~  146 (174)
T d1wmsa_          71 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGD  146 (174)
T ss_dssp             HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTC
T ss_pred             hhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHH----HcCC
Confidence            467789999999999999999999988877655433   333346899999999998653 34555555543    2235


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +++++|||++|.||+++|+++++.+.
T Consensus       147 ~~~~e~Sak~~~gI~e~f~~l~~~il  172 (174)
T d1wmsa_         147 YPYFETSAKDATNVAAAFEEAVRRVL  172 (174)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCcCHHHHHHHHHHHHh
Confidence            68999999999999999999998775

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=3e-19  Score=102.87  Aligned_cols=99  Identities=14%  Similarity=0.150  Sum_probs=74.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHHHH
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVHRA   67 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~~~   67 (106)
                      +++.+++++|++++|||++++.||+.+..++...+.... .+.|+++||||+|+...              ...++..+.
T Consensus        66 ~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~  144 (179)
T d1m7ba_          66 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM  144 (179)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred             cccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHH
Confidence            567899999999999999999999998877766554322 47899999999997532              222233222


Q ss_pred             hCCCCcCCCceEEEEccccCCC-ChHHHHHHHHHHHhhc
Q psy12794         68 LGLENLKDRTFQIFKTSAKEGE-GLNDSMDWLSNALQKH  105 (106)
Q Consensus        68 ~~~~~~~~~~~~~~~~sa~~~~-~v~~~~~~l~~~~~~~  105 (106)
                      ..    +.....|++|||++|. |++++|+.+.+.+.+|
T Consensus       145 a~----~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         145 AK----QIGAATYIECSALQSENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             HH----HHTCSEEEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred             HH----HhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhcC
Confidence            21    1123589999999998 5999999999988764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.9e-18  Score=99.74  Aligned_cols=98  Identities=17%  Similarity=0.257  Sum_probs=76.6

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF   78 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~   78 (106)
                      ++|+.|++++|++++|+|++++.++.....++..+.+. ...+.|+++++||+|+.+.  ....+.....     ...++
T Consensus        70 ~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~  143 (194)
T d2bcgy1          70 TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKM  143 (194)
T ss_dssp             CCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTC
T ss_pred             HHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhh-----hccCc
Confidence            47999999999999999999999999888776655432 2367899999999998753  3333333332     22356


Q ss_pred             EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         79 QIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .++++||++|.|++++|+.+++.+.+
T Consensus       144 ~~~e~SAk~g~gi~e~f~~l~~~i~~  169 (194)
T d2bcgy1         144 PFLETSALDSTNVEDAFLTMARQIKE  169 (194)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ceEEEecCcCccHHHHHHHHHHHHHH
Confidence            89999999999999999999987754

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=2.7e-18  Score=99.05  Aligned_cols=99  Identities=18%  Similarity=0.225  Sum_probs=75.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhc---CcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCc
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLK---EEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRT   77 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~   77 (106)
                      +|..++.++|++++++|.+++.++..+..|+.++..   .....+.|+++|+||+|+.+. ....+..+...    ...+
T Consensus        67 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~  142 (184)
T d1vg8a_          67 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNN  142 (184)
T ss_dssp             SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTS
T ss_pred             cccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHH----HhcC
Confidence            567889999999999999999999888877655543   222345799999999998654 33333433332    2346


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +++++|||++|.||+++|++|++.+.+
T Consensus       143 ~~~~e~Sak~~~gI~e~f~~l~~~i~~  169 (184)
T d1vg8a_         143 IPYFETSAKEAINVEQAFQTIARNALK  169 (184)
T ss_dssp             CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence            789999999999999999999887654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.76  E-value=3.3e-17  Score=92.53  Aligned_cols=104  Identities=66%  Similarity=1.111  Sum_probs=87.1

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      .|..++..++++++++|..+..++.....++............|+++++||.|+.......++.+...........++++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  144 (169)
T d1upta_          65 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIF  144 (169)
T ss_dssp             GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEE
T ss_pred             cchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEE
Confidence            56778899999999999998888888777776666665567799999999999987777777777666444456778999


Q ss_pred             EccccCCCChHHHHHHHHHHHhhc
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ++||++|+||+++|++|++.+.+|
T Consensus       145 ~~SA~~g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         145 KTSATKGTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999998876

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.5e-17  Score=95.36  Aligned_cols=97  Identities=11%  Similarity=0.158  Sum_probs=73.0

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHh--cCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCCc
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAML--KEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDRT   77 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~   77 (106)
                      ..|++++|++++|||++++.||+.+..|...+.  ......+.|+++|+||.|+...    ....+..+...    ...+
T Consensus        65 ~~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~----~~~~  140 (175)
T d2bmja1          65 AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA----DMKR  140 (175)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH----TSTT
T ss_pred             cccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHH----HhCC
Confidence            358999999999999999999999887766543  2333356799999999987432    23444444433    3356


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         78 FQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++|++|||++|.|++++|..+++.+.+
T Consensus       141 ~~~~e~SAk~~~~v~~~F~~l~~~i~~  167 (175)
T d2bmja1         141 CSYYETCATYGLNVDRVFQEVAQKVVT  167 (175)
T ss_dssp             EEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence            799999999999999999999987653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=5.1e-20  Score=105.15  Aligned_cols=96  Identities=23%  Similarity=0.339  Sum_probs=75.6

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-----CCHHHHHHHhCCCCcCCC
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-----MSVAEVHRALGLENLKDR   76 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~   76 (106)
                      +|+.+++++|++++|||.+++.+++.+..++....... ....|+++++||+|+...     ....+..+..     +..
T Consensus        68 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~-----~~~  141 (170)
T d1ek0a_          68 LAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDMLQEGGERKVAREEGEKLA-----EEK  141 (170)
T ss_dssp             GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHH
T ss_pred             HHHHHHhccceEEEEEeCCcccchhhhhhhhhhhcccc-ccccceeeeecccccccccchhhhhHHHHHHHH-----HHc
Confidence            57789999999999999999999999988776554432 256899999999997532     3444444443     234


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         77 TFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      ++++++|||++|.||+++|..|+++++
T Consensus       142 ~~~~~e~Sak~g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         142 GLLFFETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred             CCEEEEecCCCCcCHHHHHHHHHHHhc
Confidence            579999999999999999999988764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.3e-18  Score=98.90  Aligned_cols=100  Identities=21%  Similarity=0.289  Sum_probs=78.5

Q ss_pred             CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceE
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      ++|..|+++++++++|+|.+++.+++.+..++...... .....|++++++|.|+... ...++..+..     ...+++
T Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~-----~~~~~~  139 (166)
T d1g16a_          66 TITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALA-----KELGIP  139 (166)
T ss_dssp             CCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHH-----HHHTCC
T ss_pred             HHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhhhhhhHHHHHHHH-----HhcCCe
Confidence            46889999999999999999999998887665554433 2356899999999998654 3344444333     223578


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhhcC
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQKHL  106 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~~~  106 (106)
                      +++|||++|.|++++|++|++.+.+|+
T Consensus       140 ~~~~Sa~~~~~v~e~f~~l~~~i~~k~  166 (166)
T d1g16a_         140 FIESSAKNDDNVNEIFFTLAKLIQEKI  166 (166)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999999998875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.1e-18  Score=97.68  Aligned_cols=97  Identities=18%  Similarity=0.294  Sum_probs=74.7

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (106)
                      +|..+++++|++++|+|.+++.++.....++........ ...|+++++||+|+...  ....++.+...     ..+++
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~d~~~~~~v~~~~~~~~~~-----~~~~~  145 (170)
T d2g6ba1          72 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLP  145 (170)
T ss_dssp             ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCC
T ss_pred             HHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccC-CCceEEEEEeeechhhcccccHHHHHHHHH-----HcCCE
Confidence            578899999999999999999999988887766554322 46899999999998653  33444444332     23568


Q ss_pred             EEEccccCCCChHHHHHHHHHHHhh
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++++||++|.|++++|++|++.+.+
T Consensus       146 ~~e~Sak~g~gi~e~f~~l~~~i~k  170 (170)
T d2g6ba1         146 FMETSAKTGLNVDLAFTAIAKELKR  170 (170)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHcCC
Confidence            9999999999999999999998753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=2.6e-16  Score=88.31  Aligned_cols=99  Identities=35%  Similarity=0.625  Sum_probs=82.5

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc-------C
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL-------K   74 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-------~   74 (106)
                      .|+.+++.++++++++|.++..++.....++..........+.|+++++||.|++......++.+.+.....       .
T Consensus        60 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~  139 (166)
T d2qtvb1          60 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEG  139 (166)
T ss_dssp             GGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCS
T ss_pred             hHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcc
Confidence            578899999999999999999888888877777777766678999999999999877777777777654322       2


Q ss_pred             CCceEEEEccccCCCChHHHHHHHHH
Q psy12794         75 DRTFQIFKTSAKEGEGLNDSMDWLSN  100 (106)
Q Consensus        75 ~~~~~~~~~sa~~~~~v~~~~~~l~~  100 (106)
                      ...+.+++|||++|+|++++|+||.+
T Consensus       140 ~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         140 QRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             SCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             cCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            34578999999999999999999975

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.70  E-value=4.8e-16  Score=88.88  Aligned_cols=101  Identities=26%  Similarity=0.559  Sum_probs=82.4

Q ss_pred             chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc--------
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL--------   73 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--------   73 (106)
                      .|.++++..+++++++|.++...+......+..........+.|+++++||.|++......++.+.++....        
T Consensus        73 ~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~  152 (186)
T d1f6ba_          73 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS  152 (186)
T ss_dssp             GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred             HHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhh
Confidence            578899999999999999999888887776767666666678999999999999877777777776653311        


Q ss_pred             ----CCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794         74 ----KDRTFQIFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        74 ----~~~~~~~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                          ...++++++|||++|+|++++|+||++++
T Consensus       153 ~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         153 LKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence                22357899999999999999999998754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.53  E-value=1.6e-14  Score=83.62  Aligned_cols=90  Identities=14%  Similarity=0.164  Sum_probs=63.3

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHH----HHHHhCCCCcCCCceEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAE----VHRALGLENLKDRTFQI   80 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~   80 (106)
                      +.+.+++++++|+|.+.+....+.  .+.+.+..   .++|+++|+||+|+.+.....+    +.+.+.    .....++
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~~~~--~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~----~~~~~~~  171 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN----IDPEDEL  171 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT----CCTTSEE
T ss_pred             ccccchhhhhhhhhcccccccccc--cccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHhc----ccCCCCE
Confidence            445678999999999765443222  23344443   4689999999999765433333    334443    2345689


Q ss_pred             EEccccCCCChHHHHHHHHHHHh
Q psy12794         81 FKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        81 ~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +.+||++|+|+++++++|.+.+.
T Consensus       172 ~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         172 ILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEeCCCCCCHHHHHHHHHHHhC
Confidence            99999999999999999998874

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=2.4e-14  Score=81.28  Aligned_cols=92  Identities=15%  Similarity=0.132  Sum_probs=62.4

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      ..++.++|+++++.|.+.......  ..+...+..   .++|+++|+||+|+.+........+...     ....+++++
T Consensus        75 ~~~~~~ad~i~~~~~~~~~~~~~~--~~~~~~l~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~i~i  144 (171)
T d1mkya1          75 LNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREFEREVKPELYS-----LGFGEPIPV  144 (171)
T ss_dssp             HHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGG-----GSSCSCEEC
T ss_pred             ccccccCcEEEEeecccccccccc--ccccccccc---ccccccccchhhhhhhhhhhHHHHHHHh-----cCCCCeEEE
Confidence            345789999999999876554433  223344433   4689999999999864322111122221     112356889


Q ss_pred             cccCCCChHHHHHHHHHHHhhc
Q psy12794         84 SAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ||++|.|+++++++|.+.+.++
T Consensus       145 SAk~g~gid~L~~~i~~~l~e~  166 (171)
T d1mkya1         145 SAEHNINLDTMLETIIKKLEEK  166 (171)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHT
T ss_pred             ecCCCCCHHHHHHHHHHhCCCC
Confidence            9999999999999999998765

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.50  E-value=2.2e-14  Score=81.95  Aligned_cols=91  Identities=16%  Similarity=0.085  Sum_probs=62.7

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      .+++++|++++|+|++++....  ..++.+.++... .++|+++|+||+|+.+..  .+..+.+..   ......++++|
T Consensus        80 ~~~~~ad~il~v~D~~~~~~~~--~~~i~~~l~~~~-~~~piilv~NK~Dl~~~~--~~~~~~~~~---~~~~~~~~~iS  151 (178)
T d1wf3a1          80 EALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYP--EEAMKAYHE---LLPEAEPRMLS  151 (178)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSH--HHHHHHHHH---TSTTSEEEECC
T ss_pred             cccccccceeeeechhhhhccc--ccchhhheeccc-cchhhhhhhcccccccCH--HHHHHHHHh---hcccCceEEEe
Confidence            3578999999999998765443  334555554322 468999999999986532  222222221   11234778899


Q ss_pred             ccCCCChHHHHHHHHHHHh
Q psy12794         85 AKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~~  103 (106)
                      |++|.|++++++++.+.+.
T Consensus       152 A~~~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         152 ALDERQVAELKADLLALMP  170 (178)
T ss_dssp             TTCHHHHHHHHHHHHTTCC
T ss_pred             cCCCCCHHHHHHHHHHhCC
Confidence            9999999999999988764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=5.5e-14  Score=80.85  Aligned_cols=105  Identities=18%  Similarity=0.260  Sum_probs=73.9

Q ss_pred             CchhhhhccCCeEEEEEECCCcchH----------HHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-------------
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRDRI----------GISKEELLAMLKEEELRDAILVILANKQDMKN-------------   57 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~~~----------~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-------------   57 (106)
                      ++|+.|+++++++++++|.++..++          .+....+...+.+....+.|+++++||+|+..             
T Consensus        57 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~  136 (195)
T d1svsa1          57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYP  136 (195)
T ss_dssp             GGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCT
T ss_pred             cchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhh
Confidence            4799999999999999999876543          34445566667666667899999999998521             


Q ss_pred             ----cCCHHHH----HHH-hCCCC-cCCCceEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         58 ----CMSVAEV----HRA-LGLEN-LKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        58 ----~~~~~~~----~~~-~~~~~-~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                          .....+.    ... ..... .....+.++++||+++.||+++|+.+.+.+.++
T Consensus       137 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         137 EYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             TCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence                0111111    111 11111 133567889999999999999999999887653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=4.1e-14  Score=81.68  Aligned_cols=104  Identities=16%  Similarity=0.261  Sum_probs=74.5

Q ss_pred             CchhhhhccCCeEEEEEECCCcc----------hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc------------
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRD----------RIGISKEELLAMLKEEELRDAILVILANKQDMKNC------------   58 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------   58 (106)
                      ++|.+|+++++++++++|.++..          .+.+....+...+......+.|+++++||+|+.+.            
T Consensus        60 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~  139 (200)
T d2bcjq2          60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFP  139 (200)
T ss_dssp             GGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHST
T ss_pred             ccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcc
Confidence            47999999999999999997643          34555566777777766678999999999996321            


Q ss_pred             ------CCHHHHH-----HHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         59 ------MSVAEVH-----RALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        59 ------~~~~~~~-----~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                            .......     ............+.++++||++|+||.++|+.+.+.+.+
T Consensus       140 ~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         140 EYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             TCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence                  0111111     112222223456788999999999999999999888764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=3.8e-14  Score=79.56  Aligned_cols=86  Identities=15%  Similarity=0.268  Sum_probs=61.6

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      .++.++|++++++|..++.+......+. ..+... ..++|+++|+||+|+.....      .+.    +..+.+++++|
T Consensus        76 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~-~~~~~iilv~NK~Dl~~~~~------~~~----~~~~~~~~~iS  143 (161)
T d2gj8a1          76 QEIEQADRVLFMVDGTTTDAVDPAEIWP-EFIARL-PAKLPITVVRNKADITGETL------GMS----EVNGHALIRLS  143 (161)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSHHHHCH-HHHHHS-CTTCCEEEEEECHHHHCCCC------EEE----EETTEEEEECC
T ss_pred             HHHHhccccceeeccccccchhhhhhhh-hhhhhc-ccccceeeccchhhhhhhHH------HHH----HhCCCcEEEEE
Confidence            5688999999999999876655554322 222221 14689999999999754321      000    22457899999


Q ss_pred             ccCCCChHHHHHHHHHHH
Q psy12794         85 AKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~  102 (106)
                      |++|.|+++++++|++.+
T Consensus       144 Ak~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         144 ARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             TTTCTTHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHhhC
Confidence            999999999999998753

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.42  E-value=3.4e-13  Score=77.02  Aligned_cols=93  Identities=22%  Similarity=0.285  Sum_probs=62.8

Q ss_pred             hhhccCCeEEEEEECCCcc--hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRD--RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      .++..++++++++|.....  .......++...  .....++|+++|+||+|+.+.....+..+.+.     ..+.+++.
T Consensus        75 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~  147 (180)
T d1udxa2          75 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAY--DPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLP  147 (180)
T ss_dssp             HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHH--CHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEE
T ss_pred             HHHHhhhhhhhhcccccccccchhhhhhhhhcc--ccccchhhhhhhhhhhhhhhHHHHHHHHHHHH-----hcCCeEEE
Confidence            3467899999999986542  222222222221  11113589999999999875444444445443     23568999


Q ss_pred             ccccCCCChHHHHHHHHHHHhh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      +||++|+|++++++.+.+.+..
T Consensus       148 iSA~tg~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         148 VSALTGAGLPALKEALHALVRS  169 (180)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEcCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999888753

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.42  E-value=3.8e-13  Score=76.92  Aligned_cols=95  Identities=15%  Similarity=0.221  Sum_probs=62.4

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH---HHHHHhCCCCcCCCceEEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA---EVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~   81 (106)
                      .....+|++++++|++.........  +...+..   .++|+++|+||+|+.+.....   +..+.+..........+++
T Consensus        78 ~~l~~~d~~ilv~d~~~g~~~~~~~--~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv  152 (179)
T d1wb1a4          78 SAADIIDLALIVVDAKEGPKTQTGE--HMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  152 (179)
T ss_dssp             HHTTSCCEEEEEEETTTCSCHHHHH--HHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             hhhhhccccccccccccccchhhhh--hhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEE
Confidence            3566899999999998765433222  2223333   468999999999986532211   1112111111122346899


Q ss_pred             EccccCCCChHHHHHHHHHHHhh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      ++||++|+|++++++.+.+.+.+
T Consensus       153 ~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         153 PISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEccCCcCHHHHHHHHHhcCCc
Confidence            99999999999999999988764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=1.8e-12  Score=72.46  Aligned_cols=82  Identities=23%  Similarity=0.358  Sum_probs=64.1

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAK   86 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~   86 (106)
                      ++++|++++|+|++++.......  +....     ...+++++.||+|+.+.....++.+.++.      ..+++++||+
T Consensus        78 ~~~ad~ii~v~d~~~~~~~~~~~--~~~~~-----~~~~~i~~~~k~d~~~~~~~~~~~~~~~~------~~~~~~vSA~  144 (160)
T d1xzpa2          78 IEKADIVLFVLDASSPLDEEDRK--ILERI-----KNKRYLVVINKVDVVEKINEEEIKNKLGT------DRHMVKISAL  144 (160)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH--HHHHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHTC------STTEEEEEGG
T ss_pred             HHhCCEEEEEEeCCCCcchhhhh--hhhhc-----ccccceeeeeeccccchhhhHHHHHHhCC------CCcEEEEECC
Confidence            57899999999999876654433  22222     35789999999999887777777777762      3468999999


Q ss_pred             CCCChHHHHHHHHHH
Q psy12794         87 EGEGLNDSMDWLSNA  101 (106)
Q Consensus        87 ~~~~v~~~~~~l~~~  101 (106)
                      +|.|++++++.|.++
T Consensus       145 ~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         145 KGEGLEKLEESIYRE  159 (160)
T ss_dssp             GTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhc
Confidence            999999999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=2.6e-12  Score=73.51  Aligned_cols=94  Identities=16%  Similarity=0.144  Sum_probs=62.2

Q ss_pred             hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEEEE
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      .+++++|++++|+|++.+.....  ..+...+..   .+.|+++++||+|+....  ...++.+.+..........+++.
T Consensus        87 ~~~~~~dvii~v~d~~~~~~~~~--~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  161 (186)
T d1mkya2          87 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF  161 (186)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhcCCEEEEeecccccchhhH--HHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEE
Confidence            45678999999999976543322  223333333   468999999999975432  33444333321111223457899


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||++|.|+++++++|.+.+.
T Consensus       162 vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         162 TSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999987664

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1.3e-12  Score=75.35  Aligned_cols=104  Identities=14%  Similarity=0.257  Sum_probs=71.7

Q ss_pred             CchhhhhccCCeEEEEEECCCcc----------hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc------------
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDRD----------RIGISKEELLAMLKEEELRDAILVILANKQDMKNC------------   58 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------   58 (106)
                      +.|.+++++++++++++|.++..          .+.+...++...+.+....+.|+++++||+|+.+.            
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~  138 (200)
T d1zcba2          59 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFL  138 (200)
T ss_dssp             --CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCT
T ss_pred             ccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCc
Confidence            36889999999999999998643          35666667777777766678999999999996321            


Q ss_pred             ------CCHHH----HHHHhCCC--CcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         59 ------MSVAE----VHRALGLE--NLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        59 ------~~~~~----~~~~~~~~--~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                            .....    +.+.+...  ......+.++++||++++||+++|+.+.+.+.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         139 EFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             TCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence                  11111    22222111  112334667889999999999999998887654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=2.4e-12  Score=73.40  Aligned_cols=97  Identities=19%  Similarity=0.209  Sum_probs=61.2

Q ss_pred             hhhccCCeEEEEEECCCcchHHH---------HHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--HHHHHHHhCCCCc
Q psy12794          5 CYYSNTDAIIYVVDSSDRDRIGI---------SKEELLAMLKEEELRDAILVILANKQDMKNCMS--VAEVHRALGLENL   73 (106)
Q Consensus         5 ~~~~~~d~~i~v~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~   73 (106)
                      .+++++|++++|+|.+.+.....         .+..+.+.+..   .++|+++|+||+|+.+...  .....+.+... .
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~-~  152 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-L  152 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-G
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHHHHHHHHHHhccc-c
Confidence            34678999999999864321111         01112222332   4689999999999754321  11223333321 1


Q ss_pred             CCCceEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794         74 KDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH  105 (106)
Q Consensus        74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~~  105 (106)
                      ......++++||++|.|++++++++.+.+++|
T Consensus       153 ~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         153 SEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence            22234588999999999999999999998875

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.29  E-value=4.3e-12  Score=74.75  Aligned_cols=103  Identities=20%  Similarity=0.228  Sum_probs=73.1

Q ss_pred             CchhhhhccCCeEEEEEECCCc----------chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc------CC----
Q psy12794          1 PYWRCYYSNTDAIIYVVDSSDR----------DRIGISKEELLAMLKEEELRDAILVILANKQDMKNC------MS----   60 (106)
Q Consensus         1 ~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------~~----   60 (106)
                      +.|.+|+++++++++++|.++.          .+..+...++...+.+....+.|++|++||+|+.+.      ..    
T Consensus        62 ~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~  141 (221)
T d1azta2          62 RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDY  141 (221)
T ss_dssp             TGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHH
T ss_pred             cchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHh
Confidence            4699999999999999999743          346666677888888877788999999999997321      00    


Q ss_pred             ----------------------HHH--------HHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794         61 ----------------------VAE--------VHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        61 ----------------------~~~--------~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~  103 (106)
                                            ...        +.+...........+..+.+||.++.++..+|..+.+.+.
T Consensus       142 f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~  214 (221)
T d1azta2         142 FPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ  214 (221)
T ss_dssp             CGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHH
T ss_pred             CccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHH
Confidence                                  001        1111111111234567889999999999999988776654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=2.7e-11  Score=70.33  Aligned_cols=100  Identities=27%  Similarity=0.378  Sum_probs=61.8

Q ss_pred             chhhhhccCCeEEEEEECCCcch-HHHHHHHHHHHhcCc--CCCCCeEEEEeeCCCCCCcCCHHHHHHHhCC--------
Q psy12794          2 YWRCYYSNTDAIIYVVDSSDRDR-IGISKEELLAMLKEE--ELRDAILVILANKQDMKNCMSVAEVHRALGL--------   70 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~--------   70 (106)
                      .|..|++.++++++|+|+++..+ ..+...++...+...  ...++|+++++||+|++......++.+.+..        
T Consensus        64 ~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~  143 (207)
T d2fh5b1          64 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVT  143 (207)
T ss_dssp             HHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhc
Confidence            47889999999999999988654 344444454444311  1245899999999999865554443322110        


Q ss_pred             ---------------CCc-----------CCCceEEEEccccCCCC------hHHHHHHHHHH
Q psy12794         71 ---------------ENL-----------KDRTFQIFKTSAKEGEG------LNDSMDWLSNA  101 (106)
Q Consensus        71 ---------------~~~-----------~~~~~~~~~~sa~~~~~------v~~~~~~l~~~  101 (106)
                                     ...           ......++++|++++.|      ++++-+||.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~  206 (207)
T d2fh5b1         144 RSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  206 (207)
T ss_dssp             CC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccccceeehhhhhhhhhcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence                           000           01235799999999987      77777777653

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.22  E-value=3.5e-11  Score=68.70  Aligned_cols=92  Identities=23%  Similarity=0.241  Sum_probs=60.5

Q ss_pred             hccCCeEEEEEECCCcch---HHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HHHHHHHhCCCCcCCCceEEE
Q psy12794          7 YSNTDAIIYVVDSSDRDR---IGISK-EELLAMLKEEELRDAILVILANKQDMKNCMS-VAEVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~---~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~   81 (106)
                      +..++.++++++......   ..... .............++|+++|+||+|+.+... ...+.+.+.      .+.+++
T Consensus        77 ~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~------~~~~v~  150 (185)
T d1lnza2          77 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------DDYPVF  150 (185)
T ss_dssp             HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCCCBC
T ss_pred             HHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhc------cCCcEE
Confidence            456889999888764432   11111 1122233344456799999999999875422 123333332      345789


Q ss_pred             EccccCCCChHHHHHHHHHHHhh
Q psy12794         82 KTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        82 ~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                      .+||++|.|++++++.+.+.+..
T Consensus       151 ~iSA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         151 PISAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             CCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             EEECCCCCCHHHHHHHHHHhhhh
Confidence            99999999999999999998753

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.13  E-value=2e-10  Score=67.73  Aligned_cols=94  Identities=23%  Similarity=0.204  Sum_probs=58.2

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC------H------------HHHH--
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS------V------------AEVH--   65 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------~------------~~~~--   65 (106)
                      .+..+|++++|+|+.+.-.....  .....+..   .++|++++.||+|+.....      .            ....  
T Consensus        90 ~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  164 (227)
T d1g7sa4          90 GGALADLAILIVDINEGFKPQTQ--EALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTK  164 (227)
T ss_dssp             SSBSCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHH
T ss_pred             cccccceEEEEEecccCcccchh--HHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHH
Confidence            45679999999999865443322  22233332   4689999999999754210      0            0000  


Q ss_pred             -----HHhCCC----------CcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794         66 -----RALGLE----------NLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK  104 (106)
Q Consensus        66 -----~~~~~~----------~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~  104 (106)
                           ..+...          .......+++.+||.+|.|++++++.+.....+
T Consensus       165 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         165 VYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                 000000          001124689999999999999999998876644

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.11  E-value=1.4e-10  Score=67.43  Aligned_cols=92  Identities=15%  Similarity=0.126  Sum_probs=58.6

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEEEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      ...+|++++|+|+.+.-.-....+ ...+...  ...+|++++.||+|+.+....    .+..+.+...  .....+++.
T Consensus       107 ~~~ad~ailvVda~~gi~~~~t~e-~~~~~~~--~~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~--~~~~~p~ip  181 (205)
T d2qn6a3         107 AALMDGAILVVAANEPFPQPQTRE-HFVALGI--IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT--WAENVPIIP  181 (205)
T ss_dssp             SSCCSEEEEEEETTSCSSCHHHHH-HHHHHHH--TTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS--TTTTCCEEE
T ss_pred             eeccccccccccccccccchhHHH-HHHHHHH--cCCceeeeccccCCCccchHHHHHHHHHHHHhccc--cCCCCeEEE
Confidence            357999999999986521111111 2222222  123688999999998653211    1233333321  234578999


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||++|.|++++++.+...++
T Consensus       182 iSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         182 VSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSC
T ss_pred             EeCCCCCChHHHHHHHHhhCC
Confidence            999999999999999887764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.10  E-value=1.3e-10  Score=67.00  Aligned_cols=92  Identities=15%  Similarity=0.169  Sum_probs=58.6

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCcCCCceEEEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      ...+|++++|+|..+........+.+ ..+..  ...++++++.||+|+.+...    ...+.+.+...  ....+++++
T Consensus        99 ~~~~d~~ilvvda~~g~~~~~t~e~~-~~~~~--~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~~--~~~~~~iIp  173 (195)
T d1kk1a3          99 ASLMDGAILVIAANEPCPRPQTREHL-MALQI--IGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGT--VAENAPIIP  173 (195)
T ss_dssp             GGGCSEEEEEEETTSCSSCHHHHHHH-HHHHH--HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS--TTTTCCEEE
T ss_pred             cccccccccccchhhhhhhhhhHHHH-HHHHH--hcCccceeeeecccchhhHHHHHHHHHHHHHhccc--cCCCCeEEE
Confidence            45799999999998753222222212 22221  12356888999999865321    22333444321  224578999


Q ss_pred             ccccCCCChHHHHHHHHHHHh
Q psy12794         83 TSAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~~~~~  103 (106)
                      +||++|.|++++++.+.+.++
T Consensus       174 iSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         174 ISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSC
T ss_pred             EECCCCCCHHHHHHHHHHHCc
Confidence            999999999999999887653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.96  E-value=7.6e-10  Score=66.88  Aligned_cols=88  Identities=17%  Similarity=0.177  Sum_probs=62.9

Q ss_pred             hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794          4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT   83 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (106)
                      ...++.+|.+++|+|+..|-+...-  .+.++++     ++|.++|.||+|+.+.....+..+.+.     ..+...+.+
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~-----~~~~~~i~i   77 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRNP--MIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFE-----NQGIRSLSI   77 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSCH--HHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHH-----TTTCCEEEC
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCCH--HHHHHHc-----CCCeEEEEECccCCchHHHHHHHHHHH-----hcCCcccee
Confidence            3468899999999999877554321  2455543     589999999999876544445555553     234578899


Q ss_pred             cccCCCChHHHHHHHHHHHh
Q psy12794         84 SAKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        84 sa~~~~~v~~~~~~l~~~~~  103 (106)
                      |+.++.|...+...+.+.+.
T Consensus        78 sa~~~~~~~~~~~~~~~~l~   97 (273)
T d1puja_          78 NSVNGQGLNQIVPASKEILQ   97 (273)
T ss_dssp             CTTTCTTGGGHHHHHHHHHH
T ss_pred             ecccCCCccccchhhhhhhh
Confidence            99999998887776665543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=3e-09  Score=60.01  Aligned_cols=87  Identities=16%  Similarity=0.202  Sum_probs=55.6

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HHH-HHHHhCCCCcCCCceEEEEcc
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-VAE-VHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      ...+++++++.|.++.....  ..+...+ ..   ...|.+++.||+|+..... ... ......    .....+++.+|
T Consensus        83 ~~~~~~~l~~~d~~~~~~~~--~~~~~~l-~~---~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~----~~~~~~~~~vS  152 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTPDD--EMVLNKL-RE---GKAPVILAVNKVDNVQEKADLLPHLQFLAS----QMNFLDIVPIS  152 (179)
T ss_dssp             CCCEEEEEEEEETTCCCHHH--HHHHHHH-HS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHT----TSCCSEEEECC
T ss_pred             hhhcceeEEEEecCccchhH--HHHHHHh-hh---ccCceeeeeeeeeccchhhhhhhHhhhhhh----hcCCCCEEEEe
Confidence            45678888888876543322  2222222 22   4578899999999765321 111 122222    22345899999


Q ss_pred             ccCCCChHHHHHHHHHHHh
Q psy12794         85 AKEGEGLNDSMDWLSNALQ  103 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~~  103 (106)
                      |++|+|++++++.+.+.+.
T Consensus       153 A~~g~gi~~L~~~i~~~lp  171 (179)
T d1egaa1         153 AETGLNVDTIAAIVRKHLP  171 (179)
T ss_dssp             TTTTTTHHHHHHHHHTTCC
T ss_pred             CcCCCCHHHHHHHHHHhCC
Confidence            9999999999999988764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.87  E-value=3.1e-09  Score=62.42  Aligned_cols=89  Identities=25%  Similarity=0.294  Sum_probs=59.0

Q ss_pred             hhhhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794          4 RCYYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK   82 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (106)
                      +.-..|.|.+++|+++.+|. +...+++++.-...    .+.|.++|+||+|+.+......+.+....   .....+++.
T Consensus         5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~---~~~~~~v~~   77 (225)
T d1u0la2           5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEI---YSGLYPIVK   77 (225)
T ss_dssp             TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH---HTTTSCEEE
T ss_pred             CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhcc---cccceeEEE
Confidence            44568999999999987653 44444444433222    57899999999999754322223222211   112357899


Q ss_pred             ccccCCCChHHHHHHHH
Q psy12794         83 TSAKEGEGLNDSMDWLS   99 (106)
Q Consensus        83 ~sa~~~~~v~~~~~~l~   99 (106)
                      +||+++.|++++...+.
T Consensus        78 vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          78 TSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             CCTTTCTTHHHHHHHHS
T ss_pred             eccccchhHhhHHHHhc
Confidence            99999999999988764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=2.2e-08  Score=56.40  Aligned_cols=86  Identities=12%  Similarity=0.057  Sum_probs=52.3

Q ss_pred             cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH----HHHHHhCCCCcCCCceEEEEcc
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA----EVHRALGLENLKDRTFQIFKTS   84 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s   84 (106)
                      ....++.+.+.......... ..+... ..   ...++++++||+|+.+.....    .+.+.+..   .....+++.+|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~---~~~~~~~i~vS  169 (188)
T d1puia_          98 SLQGLVVLMDIRHPLKDLDQ-QMIEWA-VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FNGDVQVETFS  169 (188)
T ss_dssp             TEEEEEEEEETTSCCCHHHH-HHHHHH-HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GCSCEEEEECB
T ss_pred             heeEEEEeecccccchhHHH-HHHHHh-hh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHh---hCCCCcEEEEe
Confidence            34455566666544333222 222222 22   467999999999976543222    22332221   12346899999


Q ss_pred             ccCCCChHHHHHHHHHHH
Q psy12794         85 AKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        85 a~~~~~v~~~~~~l~~~~  102 (106)
                      |++|.|++++++.|.+.+
T Consensus       170 A~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         170 SLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999988764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.67  E-value=2e-08  Score=57.86  Aligned_cols=93  Identities=20%  Similarity=0.203  Sum_probs=57.0

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HH----HHHHHhCCCCcCCCceEEE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-VA----EVHRALGLENLKDRTFQIF   81 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~~~~~~   81 (106)
                      ...+|++++|+|+.+....+. .+.+ .+...  ...+|++++.||+|+..... .+    ++.+.+..........+++
T Consensus        87 ~~~aD~allVVda~~G~~~QT-~~~~-~~a~~--~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii  162 (196)
T d1d2ea3          87 TAPLDGCILVVAANDGPMPQT-REHL-LLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPII  162 (196)
T ss_dssp             SSCCSEEEEEEETTTCSCHHH-HHHH-HHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEE
T ss_pred             HhhcCeEEEEEEcCCCCchhH-HHHH-HHHHH--hcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEE
Confidence            467899999999987543322 2222 22222  13468999999999854211 11    2333332222233457899


Q ss_pred             EccccCC----------CChHHHHHHHHHHHh
Q psy12794         82 KTSAKEG----------EGLNDSMDWLSNALQ  103 (106)
Q Consensus        82 ~~sa~~~----------~~v~~~~~~l~~~~~  103 (106)
                      .+||++|          .|+.++++.+.+.++
T Consensus       163 ~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         163 VGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             ECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             EEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            9999988          478888887766553

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.59  E-value=3.7e-07  Score=53.39  Aligned_cols=81  Identities=19%  Similarity=0.135  Sum_probs=50.8

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCC-CeEEEEeeCCCCCCcCC--H----HHHHHHhCCCCcCCCceE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRD-AILVILANKQDMKNCMS--V----AEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK~D~~~~~~--~----~~~~~~~~~~~~~~~~~~   79 (106)
                      ...+|++++|+|+..........  ...+...   .+ +.++++.||+|+.+...  .    .++...+....+....++
T Consensus       110 ~~~aD~ailVvda~~G~~~Qt~e--~~~~~~~---~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~  184 (222)
T d1zunb3         110 ASTCDLAIILVDARYGVQTQTRR--HSYIASL---LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMA  184 (222)
T ss_dssp             HTTCSEEEEEEETTTCSCHHHHH--HHHHHHH---TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEE
T ss_pred             cccCceEEEEeccccCcccchHH--HHHHHHH---cCCCEEEEEEEccccccccceehhhhHHHHhhhhHhhccCCCceE
Confidence            45789999999998754433222  2222222   24 56899999999865321  1    123333333333445688


Q ss_pred             EEEccccCCCChH
Q psy12794         80 IFKTSAKEGEGLN   92 (106)
Q Consensus        80 ~~~~sa~~~~~v~   92 (106)
                      ++++||.+|.|+.
T Consensus       185 ~IPiSA~~G~ni~  197 (222)
T d1zunb3         185 FVPMSALKGDNVV  197 (222)
T ss_dssp             EEECCTTTCTTTS
T ss_pred             EEEEEcccCccCC
Confidence            9999999999883

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.54  E-value=2.7e-09  Score=62.88  Aligned_cols=86  Identities=16%  Similarity=0.217  Sum_probs=57.3

Q ss_pred             hhhhccCCeEEEEEECCCc-chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHH----HHHHhCCCCcCCCce
Q psy12794          4 RCYYSNTDAIIYVVDSSDR-DRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAE----VHRALGLENLKDRTF   78 (106)
Q Consensus         4 ~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~   78 (106)
                      +.-..|.|.+++|+++.+| .++..+++++.-..    ..+.+.++|+||+|+.+.....+    ..+.+     ...++
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y-----~~~g~   75 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RNIGY   75 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HHHTC
T ss_pred             CCCccccCEEEEEEECCCCCCCHHHHHHHHHHHH----HcCCCEEEEEecccccccHHHHHHHHHHHHHH-----hhccc
Confidence            4456899999999998765 34555554443322    25789999999999875432222    22222     12356


Q ss_pred             EEEEccccCCCChHHHHHHH
Q psy12794         79 QIFKTSAKEGEGLNDSMDWL   98 (106)
Q Consensus        79 ~~~~~sa~~~~~v~~~~~~l   98 (106)
                      +++.+||+++.|++++..++
T Consensus        76 ~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          76 DVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             CEEECCHHHHTTCTTTGGGG
T ss_pred             cceeeecCChhHHHHHHHhh
Confidence            89999999999998877655

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.30  E-value=4.8e-07  Score=52.87  Aligned_cols=92  Identities=17%  Similarity=0.102  Sum_probs=50.9

Q ss_pred             cCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHH----------HHhCCCC-----
Q psy12794          9 NTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMSVAEVH----------RALGLEN-----   72 (106)
Q Consensus         9 ~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~----------~~~~~~~-----   72 (106)
                      ..+.+++++|+........... .+...... .....|.+++.||+|+..........          .......     
T Consensus       123 ~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (244)
T d1yrba1         123 PYPLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGL  201 (244)
T ss_dssp             SSCEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHH
T ss_pred             cCceEEEEeccccccCchhHhhHHHHHHHHH-HHhCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            4567899999853322221111 11111000 01357999999999986532111111          0000000     


Q ss_pred             ----------cCCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794         73 ----------LKDRTFQIFKTSAKEGEGLNDSMDWLSNA  101 (106)
Q Consensus        73 ----------~~~~~~~~~~~sa~~~~~v~~~~~~l~~~  101 (106)
                                -....++++.+||++|+|+++++..|.++
T Consensus       202 ~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         202 MAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence                      00134678999999999999999988765

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=7.2e-07  Score=54.97  Aligned_cols=88  Identities=16%  Similarity=0.120  Sum_probs=50.6

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhC--CCCcCCCceE
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALG--LENLKDRTFQ   79 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~--~~~~~~~~~~   79 (106)
                      +...+|.+++|.++...   ++++....-.+      +.+=++|.||+|.......    .+....+.  ......+..+
T Consensus       164 i~~~aD~~l~v~~P~~G---d~iq~~k~gi~------e~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~  234 (327)
T d2p67a1         164 VARMVDCFISLQIAGGG---DDLQGIKKGLM------EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPR  234 (327)
T ss_dssp             HHTTCSEEEEEECC---------CCCCHHHH------HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCE
T ss_pred             hhhccceEEEEecCCCc---hhhhhhchhhh------ccccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcce
Confidence            45678999999876443   33221111111      1234888999998653211    12222221  1112345568


Q ss_pred             EEEccccCCCChHHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++.|||.+|+|++++.+.+.++.
T Consensus       235 V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         235 VLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             EEECBGGGTBSHHHHHHHHHHHH
T ss_pred             eEEEEeeCCCCHHHHHHHHHHHH
Confidence            99999999999999999887654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.18  E-value=1.6e-05  Score=47.81  Aligned_cols=47  Identities=21%  Similarity=0.095  Sum_probs=32.7

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      .++-+|++|+|+|+.+.-...-.. .|.. ...   .+.|.+++.||+|...
T Consensus        91 ~l~~~D~avlVvda~~Gv~~~T~~-~w~~-a~~---~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          91 SMRVLDGAIVVFDSSQGVEPQSET-VWRQ-AEK---YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             HHHHCCEEEEEEETTTSSCHHHHH-HHHH-HHT---TTCCEEEEEECTTSTT
T ss_pred             HHHhhhheEEeccccCCcchhHHH-HHHH-HHH---cCCCEEEEEecccccc
Confidence            456789999999998764443322 2323 233   5799999999999744

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.09  E-value=2.2e-06  Score=49.37  Aligned_cols=77  Identities=19%  Similarity=0.206  Sum_probs=44.2

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcC-CH----HHHHHHhCCCCcCCCceE
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCM-SV----AEVHRALGLENLKDRTFQ   79 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~-~~----~~~~~~~~~~~~~~~~~~   79 (106)
                      -...+|++++|+|+++.-...... .+ .+...   .+.| ++++.||+|+.+.. ..    .++.+.+..........+
T Consensus        87 ~~~~aD~avlVvda~~Gv~~qt~~-~~-~~~~~---~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~  161 (204)
T d2c78a3          87 GAAQMDGAILVVSAADGPMPQTRE-HI-LLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVP  161 (204)
T ss_dssp             HHTTCSSEEEEEETTTCCCHHHHH-HH-HHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred             HHHHCCEEEEEEECCCCCcHHHHH-HH-HHHHH---cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCcccce
Confidence            356799999999998765443322 22 22222   3555 67789999985421 11    233333332222334567


Q ss_pred             EEEccccC
Q psy12794         80 IFKTSAKE   87 (106)
Q Consensus        80 ~~~~sa~~   87 (106)
                      ++..||..
T Consensus       162 ~i~~sa~~  169 (204)
T d2c78a3         162 VIRGSALL  169 (204)
T ss_dssp             EEECCHHH
T ss_pred             eeeeechh
Confidence            88888763

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.94  E-value=1.3e-05  Score=49.12  Aligned_cols=87  Identities=18%  Similarity=0.126  Sum_probs=51.8

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH-----HHHHHhCCC--CcCCCceE
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA-----EVHRALGLE--NLKDRTFQ   79 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-----~~~~~~~~~--~~~~~~~~   79 (106)
                      ..-+|..++|..+...+   +++.      ...+..+.+=++|.||+|+.+.....     +....+...  ....+..+
T Consensus       162 ~~~~D~~v~v~~p~~GD---~iQ~------~k~gilE~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~  232 (323)
T d2qm8a1         162 ADLTDFFLVLMLPGAGD---ELQG------IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPP  232 (323)
T ss_dssp             HTTSSEEEEEECSCC---------------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCC
T ss_pred             hcccceEEEEeeccchh---hhhh------hhhhHhhhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCc
Confidence            34588999999876543   2221      11111123559999999986543211     122222211  11234568


Q ss_pred             EEEccccCCCChHHHHHHHHHHH
Q psy12794         80 IFKTSAKEGEGLNDSMDWLSNAL  102 (106)
Q Consensus        80 ~~~~sa~~~~~v~~~~~~l~~~~  102 (106)
                      ++.+||++|+|++++.+.+.++.
T Consensus       233 V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         233 VVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             eEEEEecCCCCHHHHHHHHHHHH
Confidence            99999999999999999997654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.90  E-value=1e-05  Score=47.09  Aligned_cols=83  Identities=19%  Similarity=0.288  Sum_probs=46.9

Q ss_pred             hccCCeEEEEEECCCcchH------HHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CH---H----HHHHHhCCCC
Q psy12794          7 YSNTDAIIYVVDSSDRDRI------GISKEELLAMLKEEELRDAILVILANKQDMKNCM-SV---A----EVHRALGLEN   72 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~---~----~~~~~~~~~~   72 (106)
                      .+-+|++++|+|+.+....      ....+.+ .....  +.-.+++++.||+|+.... ..   .    .+.+.+....
T Consensus       102 ~~~~D~allVVda~~G~~~~t~~~~~qt~e~l-~~~~~--~~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~  178 (224)
T d1jnya3         102 ASQADAAILVVSAKKGEYEAGMSVEGQTREHI-ILAKT--MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYG  178 (224)
T ss_dssp             SSCCSEEEEEEECSTTHHHHHHSTTCHHHHHH-HHHHH--TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhhceEEEEEecccCcccccccccchhHHHH-HHHHH--hCCCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcC
Confidence            4568999999999864211      1111111 11111  1335789999999986421 11   1    1222222222


Q ss_pred             cCCCceEEEEccccCCCChH
Q psy12794         73 LKDRTFQIFKTSAKEGEGLN   92 (106)
Q Consensus        73 ~~~~~~~~~~~sa~~~~~v~   92 (106)
                      ......+++.+||..|.|+.
T Consensus       179 ~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         179 FNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             CCCTTCEEEECBTTTTBTTT
T ss_pred             CCcccCeEEEEEccCCCCcc
Confidence            23456789999999999874

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=3.6e-05  Score=43.67  Aligned_cols=53  Identities=19%  Similarity=0.270  Sum_probs=34.7

Q ss_pred             hccCCeEEEEEECCC-cchHHHHHHHHHHHh---cCcCCCCCeEEEEeeCCCCCCcC
Q psy12794          7 YSNTDAIIYVVDSSD-RDRIGISKEELLAML---KEEELRDAILVILANKQDMKNCM   59 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~---~~~~~~~~p~ilv~nK~D~~~~~   59 (106)
                      ...++.+++++|..+ ..++.+...++....   ......++|+++++||+|+....
T Consensus        71 ~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          71 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             hhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            445688999999774 445555555443322   22223578999999999986543

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.78  E-value=5.3e-05  Score=44.65  Aligned_cols=86  Identities=20%  Similarity=0.239  Sum_probs=46.9

Q ss_pred             hccCCeEEEEEECCCcchH-----H-HHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-C---HHHHHHHhCCC-----
Q psy12794          7 YSNTDAIIYVVDSSDRDRI-----G-ISKEELLAMLKEEELRDAILVILANKQDMKNCM-S---VAEVHRALGLE-----   71 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~-----~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~---~~~~~~~~~~~-----   71 (106)
                      ...+|++++|+|+....-.     . ...+.+ .+...  ..-++++++.||+|++... .   ..++.+.+...     
T Consensus       123 ~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l-~l~~~--~~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~  199 (245)
T d1r5ba3         123 ASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART--QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVA  199 (245)
T ss_dssp             TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH--TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcceeeEEEcCCCccCCccccccchHHHH-HHHHH--cCCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHh
Confidence            3468999999999764200     0 111111 22222  1224588999999986422 1   12222222100     


Q ss_pred             Cc-CCCceEEEEccccCCCChHHHH
Q psy12794         72 NL-KDRTFQIFKTSAKEGEGLNDSM   95 (106)
Q Consensus        72 ~~-~~~~~~~~~~sa~~~~~v~~~~   95 (106)
                      .. ....++++++||++|+|+.++.
T Consensus       200 ~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         200 GYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CcCcccCCEEEEeeccCCCCcccch
Confidence            00 1124689999999999997653

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.75  E-value=9e-05  Score=44.24  Aligned_cols=46  Identities=13%  Similarity=0.187  Sum_probs=31.6

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK   56 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   56 (106)
                      ..+-+|++++|+|+.+.-...... .+ +....   .++|.+++.||+|..
T Consensus        87 al~~~D~avlvvda~~Gv~~~t~~-~~-~~~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          87 ALEAADAALVAVSAEAGVQVGTER-AW-TVAER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHH-HH-HHHHH---TTCCEEEEEECGGGC
T ss_pred             hhcccCceEEEeeccCCccchhHH-HH-Hhhhh---ccccccccccccccc
Confidence            356789999999998764443322 22 22222   468999999999963

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=6.7e-05  Score=44.07  Aligned_cols=81  Identities=15%  Similarity=0.171  Sum_probs=45.1

Q ss_pred             hccCCeEEEEEECCCcchHH-------HHHHHHHHHhcCcCCCC-CeEEEEeeCCCCCCcCC--H----HHHHHHhCCCC
Q psy12794          7 YSNTDAIIYVVDSSDRDRIG-------ISKEELLAMLKEEELRD-AILVILANKQDMKNCMS--V----AEVHRALGLEN   72 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~-~p~ilv~nK~D~~~~~~--~----~~~~~~~~~~~   72 (106)
                      ...+|++++|+|++... ++       +..+.+ .+...   .+ ++++++.||+|+.+...  .    .++.+.+....
T Consensus       105 ~~~~D~ailvvda~~G~-~e~g~~~~~QT~eh~-~~~~~---~gv~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~  179 (239)
T d1f60a3         105 TSQADCAILIIAGGVGE-FEAGISKDGQTREHA-LLAFT---LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVG  179 (239)
T ss_dssp             SSCCSEEEEEEECSHHH-HHHHTCTTSHHHHHH-HHHHH---TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCEEEEEEECCCCc-cccccCchHhHHHHH-HHHHH---cCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence            45789999999987531 11       111112 11222   23 46888999999765211  1    12222221111


Q ss_pred             cCCCceEEEEccccCCCChH
Q psy12794         73 LKDRTFQIFKTSAKEGEGLN   92 (106)
Q Consensus        73 ~~~~~~~~~~~sa~~~~~v~   92 (106)
                      .....++++.+||..|.|+-
T Consensus       180 ~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         180 YNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             CCGGGCCEEECCTTTCBTTT
T ss_pred             CCCCcEEEEEEEccCCCcce
Confidence            12235688999999998863

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.65  E-value=0.0012  Score=40.55  Aligned_cols=45  Identities=24%  Similarity=0.197  Sum_probs=32.2

Q ss_pred             hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794          6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM   55 (106)
Q Consensus         6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   55 (106)
                      .++-+|++++|+|+.+.-...... .+.....    .+.|++++.||+|.
T Consensus       116 al~~~D~allVVda~eGv~~qT~~-~~~~a~~----~~~p~i~viNKiDr  160 (341)
T d1n0ua2         116 ALRVTDGALVVVDTIEGVCVQTET-VLRQALG----ERIKPVVVINKVDR  160 (341)
T ss_dssp             HHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCEEEEEEECHHH
T ss_pred             HHhhcCceEEEEecccCcchhHHH-HHHHHHH----cCCCeEEEEECccc
Confidence            456799999999998765554333 2333332    46899999999995

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.0057  Score=38.23  Aligned_cols=88  Identities=15%  Similarity=0.082  Sum_probs=48.6

Q ss_pred             hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC---------cCCHHHHHH--------HhC
Q psy12794          7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN---------CMSVAEVHR--------ALG   69 (106)
Q Consensus         7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------~~~~~~~~~--------~~~   69 (106)
                      ...+|.++++.|..  .+-.+.  .+...+..   .++|+++|.||+|...         .....+..+        .+.
T Consensus       133 ~~~~d~~l~~~~~~--~~~~d~--~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~  205 (400)
T d1tq4a_         133 FYEYDFFIIISATR--FKKNDI--DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  205 (400)
T ss_dssp             GGGCSEEEEEESSC--CCHHHH--HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhcceEEEEecCCC--CCHHHH--HHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence            45678888777642  222222  23333443   4789999999999420         011222111        111


Q ss_pred             CCCcCCCceEEEEccccC--CCChHHHHHHHHHHHh
Q psy12794         70 LENLKDRTFQIFKTSAKE--GEGLNDSMDWLSNALQ  103 (106)
Q Consensus        70 ~~~~~~~~~~~~~~sa~~--~~~v~~~~~~l~~~~~  103 (106)
                      ..  .....+++.+|..+  ..|+.++.+.+.+.+.
T Consensus       206 ~~--~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         206 EN--GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             HT--TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             Hc--CCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence            10  11233567777654  4588999998887764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.27  E-value=0.065  Score=31.75  Aligned_cols=52  Identities=13%  Similarity=0.079  Sum_probs=30.5

Q ss_pred             chhhhhccCCeEEEEE-ECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          2 YWRCYYSNTDAIIYVV-DSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         2 ~~~~~~~~~d~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      ++..|+.+++.+++++ +......-.....+... +..   ....++.|.||+|...
T Consensus       160 ~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~-~~~---~~~r~i~Vitk~D~~~  212 (306)
T d1jwyb_         160 MVMAYIKKQNAIIVAVTPANTDLANSDALQLAKE-VDP---EGKRTIGVITKLDLMD  212 (306)
T ss_dssp             HHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHH-HCS---SCSSEEEEEECTTSSC
T ss_pred             HHHHHHhCCCceeEEeecccccccccHHHHHHHH-hCc---CCCeEEEEEecccccc
Confidence            4567899999866665 44332222222222222 222   3468999999999753

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.65  E-value=0.18  Score=29.62  Aligned_cols=51  Identities=6%  Similarity=0.031  Sum_probs=30.8

Q ss_pred             hhhhhccCCeE-EEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          3 WRCYYSNTDAI-IYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         3 ~~~~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      +..|+.+.+.+ +++.+++...+-.+...+... +..   ...+.+.|.||+|...
T Consensus       155 ~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~-~~~---~~~r~i~Vltk~D~~~  206 (299)
T d2akab1         155 LMQFVTKENCLILAVSPANSDLANSDALKIAKE-VDP---QGQRTIGVITKLDLMD  206 (299)
T ss_dssp             HHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHH-HCT---TCSSEEEEEECGGGSC
T ss_pred             HHHHhcCccceeeeecccccchhhhHHHHHHHH-hCc---CCCceeeEEecccccc
Confidence            45677778754 556666544443343333333 322   3568999999999754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.51  E-value=0.36  Score=27.29  Aligned_cols=43  Identities=21%  Similarity=0.094  Sum_probs=25.4

Q ss_pred             CCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794         10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC   58 (106)
Q Consensus        10 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   58 (106)
                      .++++.|+|+............+...+..      .=+++.||+|+.+.
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~------AD~ivlNK~Dl~~~  164 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAGE  164 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHHHT------CSEEEEECTTTCSC
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHHHh------CCcccccccccccH
Confidence            57899999987643322222223333332      22788999998653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.97  E-value=0.35  Score=27.94  Aligned_cols=48  Identities=6%  Similarity=-0.007  Sum_probs=27.7

Q ss_pred             ccCCeEEEEEECCCcc-hHHHHH--HHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794          8 SNTDAIIYVVDSSDRD-RIGISK--EELLAMLKEEELRDAILVILANKQDMKN   57 (106)
Q Consensus         8 ~~~d~~i~v~d~~~~~-~~~~~~--~~~~~~~~~~~~~~~p~ilv~nK~D~~~   57 (106)
                      ...|++++|++.+... +..+..  ..+...+.. . .-+++++|+||+|...
T Consensus       111 ~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~-~-~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         111 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK-G-IWNKAIVALTHAQFSP  161 (257)
T ss_dssp             CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCG-G-GGGGEEEEEECCSCCC
T ss_pred             CCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcch-h-hhhCEEEEEECcccCC
Confidence            3568899999887532 222211  223333211 1 1368899999999753