Psyllid ID: psy12820

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MLREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRFP
Secondary Structure (PSIPRED)
cccEEEEccccccccHHHcccccccccccccEEcccccccccccccccccccccEEEEEEEEEEEEccccccccccccccEEEEEEEEEccccccEEEEEEccccccccEEccEEEEEEcccccEEEEEEEEEccccccccEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHEHEHcccccccccEHHccHEcccccccEEEcHHHHccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEEEEccccHHHHHcccEEcccccccccccEEEEEEEccEEEEEEEEEEEccccccccccccEEccccEcccc
Coil and Loop (DISEMBL)
MLREFTYNRQSVINKAMQVNHAkfrmnggcgyllrpafmfsesydpydptslvgVTRVKVLLRVLAARHLtrsgrcttspfvevevlgadydtglklttktvsdngfnptwnesceftvhnpeMALLRFVcqdedmfgdsnfigqatypvytnrfp
Flexible Loop (DISEMBL)
mlreftynrqSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAArhltrsgrcttspfvevevLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSnfigqatypvytnrfp
Low Complexity Region (SEG)
MLREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRFP
Disordered region (IsUnstruct)
******YNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYT****
Disordered Region (DISOPRED)
MLREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPY*PT*LVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRFP
Disordered Region (DISEMBL)
MLREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRFP
Disordered Region (DISPRO)
MLREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRFP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRFP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
P08487	1291	1-phosphatidylinositol 4,	yes	N/A	0.871	0.105	0.492	2e-34
P10686	1290	1-phosphatidylinositol 4,	yes	N/A	0.871	0.105	0.492	1e-33
Q62077	1302	1-phosphatidylinositol 4,	yes	N/A	0.871	0.104	0.492	1e-33
P19174	1290	1-phosphatidylinositol 4,	yes	N/A	0.871	0.105	0.485	1e-32
P24135	1265	1-phosphatidylinositol 4,	no	N/A	0.865	0.106	0.464	2e-31
P16885	1265	1-phosphatidylinositol 4,	no	N/A	0.865	0.106	0.464	2e-31
Q8CIH5	1265	1-phosphatidylinositol 4,	no	N/A	0.865	0.106	0.464	1e-30
Q4KWH5	1682	1-phosphatidylinositol 4,	no	N/A	0.839	0.077	0.392	5e-24
O75038	1416	1-phosphatidylinositol 4,	no	N/A	0.839	0.092	0.4	9e-24
Q4KWH8	1693	1-phosphatidylinositol 4,	no	N/A	0.839	0.077	0.392	1e-23

>sp|P08487|PLCG1_BOVIN 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Bos taurus GN=PLCG1 PE=1 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 92/138 (66%), Gaps = 2/138 (1%)

Query: 14   NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
            +K MQ+N A F   G CGY+L+P+ M  E++DP+D +SL G+    + + VL ARHL ++
Sbjct: 1044 DKPMQMNQALFLAGGHCGYVLQPSVMRDEAFDPFDKSSLRGLEPCAICIEVLGARHLPKN 1103

Query: 74   GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW-NESCEFTVHNPEMALLRFVCQ 132
            GR    PFVE+EV GA+YD+ +K  T+ V DNG NP W  +   F + NPE A LRFV  
Sbjct: 1104 GRGIVCPFVEIEVAGAEYDS-IKQKTEFVVDNGLNPVWPAKPFHFQISNPEFAFLRFVVY 1162

Query: 133  DEDMFGDSNFIGQATYPV 150
            +EDMF D NF+ QAT+PV
Sbjct: 1163 EEDMFSDQNFLAQATFPV 1180

Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. Becomes activated in response to ligand-mediated activation of receptor-type tyrosine kinases, such as PDGFRA, PDGFRB, FGFR1, FGFR2, FGFR3 and FGFR4. Plays a role in actin reorganization and cell migration.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 1EC: 1

>sp|P10686|PLCG1_RAT 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Rattus norvegicus GN=Plcg1 PE=1 SV=1

 Score =  142 bits (357), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 91/138 (65%), Gaps = 2/138 (1%)

Query: 14   NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
            +K MQ+N A F   G CGY+L+P+ M  E++DP+D +SL G+    + + VL ARHL ++
Sbjct: 1044 DKPMQMNQALFMAGGHCGYVLQPSTMRDEAFDPFDKSSLRGLEPCVICIEVLGARHLPKN 1103

Query: 74   GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW-NESCEFTVHNPEMALLRFVCQ 132
            GR    PFVE+EV GA+YD+  K  T+ V DNG NP W  +   F + NPE A LRFV  
Sbjct: 1104 GRGIVCPFVEIEVAGAEYDS-TKQKTEFVVDNGLNPVWPAKPFHFQISNPEFAFLRFVVY 1162

Query: 133  DEDMFGDSNFIGQATYPV 150
            +EDMF D NF+ QAT+PV
Sbjct: 1163 EEDMFSDQNFLAQATFPV 1180

Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. Becomes activated in response to ligand-mediated activation of receptor-type tyrosine kinases, such as PDGFRA, PDGFRB, FGFR1, FGFR2, FGFR3 and FGFR4. Plays a role in actin reorganization and cell migration.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q62077|PLCG1_MOUSE 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Mus musculus GN=Plcg1 PE=1 SV=2

 Score =  142 bits (357), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 91/138 (65%), Gaps = 2/138 (1%)

Query: 14   NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
            +K MQ+N A F   G CGY+L+P+ M  E++DP+D +SL G+    + + VL ARHL ++
Sbjct: 1044 DKPMQMNQALFMAGGHCGYVLQPSTMRDEAFDPFDKSSLRGLEPCVICIEVLGARHLPKN 1103

Query: 74   GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW-NESCEFTVHNPEMALLRFVCQ 132
            GR    PFVE+EV GA+YD+  K  T+ V DNG NP W  +   F + NPE A LRFV  
Sbjct: 1104 GRGIVCPFVEIEVAGAEYDS-TKQKTEFVVDNGLNPVWPAKPFHFQISNPEFAFLRFVVY 1162

Query: 133  DEDMFGDSNFIGQATYPV 150
            +EDMF D NF+ QAT+PV
Sbjct: 1163 EEDMFSDQNFLAQATFPV 1180

Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. Becomes activated in response to ligand-mediated activation of receptor-type tyrosine kinases, such as PDGFRA, PDGFRB, FGFR1, FGFR2, FGFR3 and FGFR4. Plays a role in actin reorganization and cell migration.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|P19174|PLCG1_HUMAN 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Homo sapiens GN=PLCG1 PE=1 SV=1

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 90/138 (65%), Gaps = 2/138 (1%)

Query: 14   NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
            +K MQ+N A F     CGY+L+P+ M  E++DP+D +SL G+    + + VL ARHL ++
Sbjct: 1044 DKPMQMNQALFMTGRHCGYVLQPSTMRDEAFDPFDKSSLRGLEPCAISIEVLGARHLPKN 1103

Query: 74   GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW-NESCEFTVHNPEMALLRFVCQ 132
            GR    PFVE+EV GA+YD+  K  T+ V DNG NP W  +   F + NPE A LRFV  
Sbjct: 1104 GRGIVCPFVEIEVAGAEYDS-TKQKTEFVVDNGLNPVWPAKPFHFQISNPEFAFLRFVVY 1162

Query: 133  DEDMFGDSNFIGQATYPV 150
            +EDMF D NF+ QAT+PV
Sbjct: 1163 EEDMFSDQNFLAQATFPV 1180

Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. Becomes activated in response to ligand-mediated activation of receptor-type tyrosine kinases, such as PDGFRA, PDGFRB, FGFR1, FGFR2, FGFR3 and FGFR4. Plays a role in actin reorganization and cell migration.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|P24135|PLCG2_RAT 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 OS=Rattus norvegicus GN=Plcg2 PE=1 SV=1

 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 89/140 (63%), Gaps = 5/140 (3%)

Query: 14   NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
            +K MQ+NHA F +NG  GY+L+P  M SE YDP  P S   +  + + ++VL ARHL + 
Sbjct: 1018 DKYMQMNHALFSLNGRTGYVLQPESMRSEKYDPMPPESQRKIL-MTLTVKVLGARHLPKL 1076

Query: 74   GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW---NESCEFTVHNPEMALLRFV 130
            GR    PFVEVE+ GA+YD+  K  T  V+DNG +P W    E   F +++P +A LRF+
Sbjct: 1077 GRSIACPFVEVEICGAEYDSN-KFKTTVVNDNGLSPVWAPTQEKVTFEIYDPNLAFLRFL 1135

Query: 131  CQDEDMFGDSNFIGQATYPV 150
              +EDMF D NF+  ATYP+
Sbjct: 1136 VYEEDMFSDPNFLAHATYPI 1155

The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. It is a crucial enzyme in transmembrane signaling.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|P16885|PLCG2_HUMAN 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 OS=Homo sapiens GN=PLCG2 PE=1 SV=4

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 88/140 (62%), Gaps = 5/140 (3%)

Query: 14   NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
            +K MQ+NHA F +NG  GY+L+P  M +E YDP  P S   +  + + ++VL ARHL + 
Sbjct: 1018 DKYMQMNHALFSLNGRTGYVLQPESMRTEKYDPMPPESQRKIL-MTLTVKVLGARHLPKL 1076

Query: 74   GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW---NESCEFTVHNPEMALLRFV 130
            GR    PFVEVE+ GA+YD   K  T  V+DNG +P W    E   F +++P +A LRFV
Sbjct: 1077 GRSIACPFVEVEICGAEYDNN-KFKTTVVNDNGLSPIWAPTQEKVTFEIYDPNLAFLRFV 1135

Query: 131  CQDEDMFGDSNFIGQATYPV 150
              +EDMF D NF+  ATYP+
Sbjct: 1136 VYEEDMFSDPNFLAHATYPI 1155

The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. It is a crucial enzyme in transmembrane signaling.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q8CIH5|PLCG2_MOUSE 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 OS=Mus musculus GN=Plcg2 PE=1 SV=1

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 87/140 (62%), Gaps = 5/140 (3%)

Query: 14   NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
            +K MQ+NHA F +NG  GY+L+P  M SE YDP  P        + + ++VL ARHL + 
Sbjct: 1018 DKYMQMNHALFSLNGRTGYVLQPESMRSEKYDPM-PLESQRKILMTLTVKVLGARHLPKL 1076

Query: 74   GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW---NESCEFTVHNPEMALLRFV 130
            GR    PFVEVE+ GA+YD+  K  T  V+DNG +P W    E   F +++P +A LRFV
Sbjct: 1077 GRSIACPFVEVEICGAEYDSN-KFKTTVVNDNGLSPVWAPTQEKVTFEIYDPNLAFLRFV 1135

Query: 131  CQDEDMFGDSNFIGQATYPV 150
              +EDMF D NF+  ATYP+
Sbjct: 1136 VYEEDMFSDPNFLAHATYPI 1155

The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. It is a crucial enzyme in transmembrane signaling.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q4KWH5|PLCH1_MOUSE 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-1 OS=Mus musculus GN=Plch1 PE=2 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 9/140 (6%)

Query: 15  KAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSG 74
           + MQ+N AKF+ NG CGY+L+P  M   +++P+    L    + +++L+V++ + L +  
Sbjct: 690 RMMQINRAKFKANGNCGYILKPQQMCKGTFNPFSGDPLPANPKKQLILKVISGQQLPKPP 749

Query: 75  RCT-------TSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALL 127
                       PFVEVE++G   D   K  T+ V DNGFNP W E+  FTVH PE+AL+
Sbjct: 750 DSMFGDRGEIIDPFVEVEIIGLPVDC-CKDQTRVVDDNGFNPVWEETLTFTVHMPEIALV 808

Query: 128 RFVCQDEDMFGDSNFIGQAT 147
           RF+  D D  G  +F+GQ T
Sbjct: 809 RFLVWDHDPIG-RDFVGQRT 827

The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by calcium-activated phosphatidylinositol-specific phospholipase C enzymes.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|O75038|PLCH2_HUMAN 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2 OS=Homo sapiens GN=PLCH2 PE=2 SV=3

 Score =  109 bits (272), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 9/140 (6%)

Query: 15  KAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSG 74
           + +Q+N AKF  NGGCGY+L+P  M    ++P     L G  + +++LR+++ + L +  
Sbjct: 715 RMLQLNRAKFSANGGCGYVLKPGCMCQGVFNPNSEDPLPGQLKKQLVLRIISGQQLPKPR 774

Query: 75  RCT-------TSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALL 127
                       PFVEVE++G   D   +  T+ V DNGFNPTW E+  F VH PE+AL+
Sbjct: 775 DSMLGDRGEIIDPFVEVEIIGLPVDCS-REQTRVVDDNGFNPTWEETLVFMVHMPEIALV 833

Query: 128 RFVCQDEDMFGDSNFIGQAT 147
           RF+  D D  G  +FIGQ T
Sbjct: 834 RFLVWDHDPIG-RDFIGQRT 852

The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. This phospholipase activity is very sensitive to calcium. May be important for formation and maintenance of the neuronal network in the postnatal brain.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q4KWH8|PLCH1_HUMAN 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-1 OS=Homo sapiens GN=PLCH1 PE=1 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 9/140 (6%)

Query: 15  KAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSG 74
           + MQ+N AKF+ NG CGY+L+P  M   +++P+    L    + +++L+V++ + L +  
Sbjct: 689 RMMQLNRAKFKANGNCGYVLKPQQMCKGTFNPFSGDPLPANPKKQLILKVISGQQLPKPP 748

Query: 75  RCT-------TSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALL 127
                       PFVEVE++G   D   K  T+ V DNGFNP W E+  FTVH PE+AL+
Sbjct: 749 DSMFGDRGEIIDPFVEVEIIGLPVDC-CKDQTRVVDDNGFNPVWEETLTFTVHMPEIALV 807

Query: 128 RFVCQDEDMFGDSNFIGQAT 147
           RF+  D D  G  +F+GQ T
Sbjct: 808 RFLVWDHDPIG-RDFVGQRT 826

The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by calcium-activated phosphatidylinositol-specific phospholipase C enzymes.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
242003780	1274	1-phosphatidylinositol-4,5-bisphosphate	0.903	0.110	0.680	3e-54
345494221	1222	PREDICTED: 1-phosphatidylinositol-4,5-bi	0.878	0.112	0.686	1e-53
328782009	1129	PREDICTED: 1-phosphatidylinositol-4,5-bi	0.878	0.121	0.649	2e-52
380028245	1184	PREDICTED: 1-phosphatidylinositol-4,5-bi	0.878	0.115	0.649	4e-52
340709574	1192	PREDICTED: LOW QUALITY PROTEIN: 1-phosph	0.878	0.114	0.627	2e-51
307167498	978	1-phosphatidylinositol-4,5-bisphosphate	0.878	0.140	0.642	2e-51
307197544	614	1-phosphatidylinositol-4,5-bisphosphate	0.878	0.223	0.627	3e-51
350401088	1192	PREDICTED: 1-phosphatidylinositol-4,5-bi	0.878	0.114	0.620	4e-51
332027167	855	1-phosphatidylinositol-4,5-bisphosphate	0.878	0.160	0.642	6e-51
322794696	435	hypothetical protein SINV_08111 [Solenop	0.878	0.314	0.635	9e-51

>gi|242003780|ref|XP_002422857.1| 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase, putative [Pediculus humanus corporis] gi|212505739|gb|EEB10119.1| 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase, putative [Pediculus humanus corporis]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 96/141 (68%), Positives = 117/141 (82%)

Query: 14   NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
            +KAMQ+N +KF +NGGCGY+LRP FMF + +D YD  +LVGV  + + +RV+ ARHLTR+
Sbjct: 1072 DKAMQINQSKFSLNGGCGYILRPDFMFRDDFDMYDHHTLVGVDPMNISIRVIGARHLTRT 1131

Query: 74   GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD 133
            GR TTSPFVEVE++GAD+D+G+KLTTKT+SDNGFNP WNE C+F V+NP  ALLRFV QD
Sbjct: 1132 GRGTTSPFVEVEIIGADFDSGVKLTTKTISDNGFNPFWNEICDFDVYNPHFALLRFVVQD 1191

Query: 134  EDMFGDSNFIGQATYPVYTNR 154
            EDMFGDSNFIGQ TYPV   R
Sbjct: 1192 EDMFGDSNFIGQCTYPVTAIR 1212

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494221|ref|XP_003427251.1| PREDICTED: 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1-like [Nasonia vitripennis]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 94/137 (68%), Positives = 114/137 (83%)

Query: 14   NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
            +K MQ+N AKFR NG CGYLL+P FMF E + PYD +SL GV  +K+ L V+ ARHL++ 
Sbjct: 1017 DKPMQLNQAKFRENGNCGYLLKPDFMFHEDFTPYDKSSLTGVDTLKITLHVIGARHLSKP 1076

Query: 74   GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD 133
            GR T SPFV+VEV+GAD+D+G+KLTTKT++DNGFNP WNESCEF V NP +A+LRFV QD
Sbjct: 1077 GRGTASPFVQVEVVGADFDSGVKLTTKTITDNGFNPMWNESCEFLVANPYLAMLRFVVQD 1136

Query: 134  EDMFGDSNFIGQATYPV 150
            EDMFGDSNFIGQATYP+
Sbjct: 1137 EDMFGDSNFIGQATYPI 1153

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782009|ref|XP_624101.3| PREDICTED: 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1 [Apis mellifera]

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 89/137 (64%), Positives = 110/137 (80%)

Query: 14   NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
            +K+MQ+N AKF+ NG CGY+L+P FMF + ++PYD   L GV  +K +L+V+ ARHL RS
Sbjct: 953  DKSMQLNQAKFKENGNCGYILKPEFMFRDDFNPYDKNCLYGVESLKFILKVIGARHLIRS 1012

Query: 74   GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD 133
            GR   SPFVE+E++GAD+D+G KLTT+T+ DNGFNP WNESCEF V NP  A +RFV QD
Sbjct: 1013 GRGIASPFVEIEIIGADFDSGTKLTTRTIPDNGFNPMWNESCEFEVFNPYFAFIRFVVQD 1072

Query: 134  EDMFGDSNFIGQATYPV 150
            EDMFGDSNFIGQATYPV
Sbjct: 1073 EDMFGDSNFIGQATYPV 1089

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028245|ref|XP_003697817.1| PREDICTED: 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1-like [Apis florea]

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 89/137 (64%), Positives = 109/137 (79%)

Query: 14   NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
            +K+MQ+N AKF+ NG CGY+L+P FMF + ++PYD   L GV  +K  L+V+ ARHL RS
Sbjct: 1008 DKSMQLNQAKFKENGNCGYILKPEFMFRDDFNPYDKNCLYGVESLKFFLKVIGARHLIRS 1067

Query: 74   GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD 133
            GR   SPFVE+E++GAD+D+G KLTT+T+ DNGFNP WNESCEF V NP  A +RFV QD
Sbjct: 1068 GRGIASPFVEIEIIGADFDSGTKLTTRTIPDNGFNPMWNESCEFEVFNPYFAFIRFVVQD 1127

Query: 134  EDMFGDSNFIGQATYPV 150
            EDMFGDSNFIGQATYPV
Sbjct: 1128 EDMFGDSNFIGQATYPV 1144

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709574|ref|XP_003393380.1| PREDICTED: LOW QUALITY PROTEIN: 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1-like [Bombus terrestris]

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/137 (62%), Positives = 110/137 (80%)

Query: 14   NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
            +K+MQ+N AKF+ NG CGY+L+P FMF + ++PYD   L G+  +K  L+V+ ARHL RS
Sbjct: 1015 DKSMQLNQAKFKENGSCGYILKPEFMFRDDFNPYDKNCLHGIESLKFSLKVIGARHLIRS 1074

Query: 74   GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD 133
            GR   SPF+E+E++GAD+D+G+KLTT+T+ DNGFNPTWNESCEF V NP  A +RF+ QD
Sbjct: 1075 GRGIASPFIEIEIIGADFDSGIKLTTRTIPDNGFNPTWNESCEFEVFNPNFAFIRFIVQD 1134

Query: 134  EDMFGDSNFIGQATYPV 150
            EDMFGDSNFIGQATY V
Sbjct: 1135 EDMFGDSNFIGQATYSV 1151

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167498|gb|EFN61071.1| 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1 [Camponotus floridanus]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 112/137 (81%)

Query: 14  NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
           +K+MQ+N AKF+ NG CGYLL+P FMF + ++PYD  +L GV  +K+ L+V+ ARHL +S
Sbjct: 801 DKSMQLNQAKFKENGNCGYLLKPEFMFRQDFNPYDKNTLYGVESLKICLKVIGARHLMKS 860

Query: 74  GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD 133
           GR T SP +EVE++GAD+D+G KLTTKT+ DNGFNP WNE+CEF + NP  AL+RF+ QD
Sbjct: 861 GRGTASPSIEVEIIGADFDSGTKLTTKTIPDNGFNPMWNETCEFEIFNPYFALIRFLVQD 920

Query: 134 EDMFGDSNFIGQATYPV 150
           EDMFGDSNFIGQATYPV
Sbjct: 921 EDMFGDSNFIGQATYPV 937

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197544|gb|EFN78774.1| 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1 [Harpegnathos saltator]

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 86/137 (62%), Positives = 111/137 (81%)

Query: 14  NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
           +K+MQ+N AKF+ NG CGYLL+P FMF   ++PYD   L  V  +K+ L+++ ARHL +S
Sbjct: 442 DKSMQLNQAKFKENGNCGYLLKPEFMFGHDFNPYDKNVLHEVNSLKINLKIIGARHLMKS 501

Query: 74  GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD 133
           GR T SP +EVE++GAD+D+G+KLTTKT+SDNGFNP WNE+CEF + NP  AL+RF+ QD
Sbjct: 502 GRGTVSPSIEVEIVGADFDSGIKLTTKTISDNGFNPMWNETCEFEIFNPYFALIRFLVQD 561

Query: 134 EDMFGDSNFIGQATYPV 150
           EDMFGD+NFIGQATYPV
Sbjct: 562 EDMFGDNNFIGQATYPV 578

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401088|ref|XP_003486046.1| PREDICTED: 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1-like [Bombus impatiens]

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 85/137 (62%), Positives = 110/137 (80%)

Query: 14   NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
            +K+MQ+N AKF+ NG CGY+L+P FMF + ++PYD   L G+  +K  L+V+ ARHL RS
Sbjct: 1015 DKSMQLNQAKFKENGSCGYILKPEFMFRDDFNPYDKNCLHGIESLKFSLKVIGARHLIRS 1074

Query: 74   GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD 133
            GR   SPF+E+E++GAD+D+G+KLTT+T+ DNGFNPTWNESC+F V NP  A +RF+ QD
Sbjct: 1075 GRGIASPFIEIEIIGADFDSGIKLTTRTIPDNGFNPTWNESCDFEVFNPNFAFIRFIVQD 1134

Query: 134  EDMFGDSNFIGQATYPV 150
            EDMFGDSNFIGQATY V
Sbjct: 1135 EDMFGDSNFIGQATYSV 1151

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027167|gb|EGI67260.1| 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1 [Acromyrmex echinatior]

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 111/137 (81%)

Query: 14  NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
           +K+MQ+N AKF+ NG CGYLL+P FMF   ++PYD  +L GV  +K+ L+++ ARHL RS
Sbjct: 717 DKSMQLNQAKFKENGNCGYLLKPEFMFRHDFNPYDKNTLHGVESLKISLKIIGARHLMRS 776

Query: 74  GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD 133
           GR T SP VE+E++GAD+D+G KLTT+T+ DNGFNP WNE+CEF V NP  AL+RF+ QD
Sbjct: 777 GRGTASPSVEIEIIGADFDSGTKLTTRTIQDNGFNPMWNETCEFEVFNPYFALIRFLVQD 836

Query: 134 EDMFGDSNFIGQATYPV 150
           EDMFGDSNFIGQATYPV
Sbjct: 837 EDMFGDSNFIGQATYPV 853

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794696|gb|EFZ17669.1| hypothetical protein SINV_08111 [Solenopsis invicta]

 Score =  204 bits (520), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 87/137 (63%), Positives = 110/137 (80%)

Query: 14  NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
           +K+MQ+N AKF+ NG CGYLL+P FMF   ++PYD  +L GV  +K+ L+++ ARHL RS
Sbjct: 248 DKSMQLNQAKFKENGNCGYLLKPEFMFRHDFNPYDKNTLYGVESLKISLKIIGARHLLRS 307

Query: 74  GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD 133
           GR T SP VE+E++GAD+D+G KLTT+T+ DNGFNP WNE+CEF   NP  AL+RF+ QD
Sbjct: 308 GRGTVSPSVEIEIIGADFDSGTKLTTRTIQDNGFNPMWNETCEFETFNPYFALIRFLVQD 367

Query: 134 EDMFGDSNFIGQATYPV 150
           EDMFGDSNFIGQATYPV
Sbjct: 368 EDMFGDSNFIGQATYPV 384

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
FB|FBgn0003416	1236	sl "small wing" [Drosophila me	0.858	0.108	0.562	1.6e-37
UNIPROTKB|F1PS03	1218	PLCG1 "Uncharacterized protein	0.871	0.111	0.492	5e-31
UNIPROTKB|F1MYF9	1219	PLCG1 "1-phosphatidylinositol	0.871	0.111	0.492	5e-31
UNIPROTKB|P08487	1291	PLCG1 "1-phosphatidylinositol	0.871	0.105	0.492	5.5e-31
UNIPROTKB|F1SDV6	1301	PLCG1 "Uncharacterized protein	0.871	0.104	0.492	7.1e-31
RGD|3347	1290	Plcg1 "phospholipase C, gamma	0.871	0.105	0.492	1.5e-30
UNIPROTKB|P10686	1290	Plcg1 "1-phosphatidylinositol	0.871	0.105	0.492	1.5e-30
MGI|MGI:97615	1302	Plcg1 "phospholipase C, gamma	0.871	0.104	0.492	1.5e-30
UNIPROTKB|F1NHI1	1148	PLCG1 "Uncharacterized protein	0.871	0.118	0.5	2.5e-30
UNIPROTKB|F1NN68	1219	PLCG1 "Uncharacterized protein	0.871	0.111	0.5	2.8e-30

FB|FBgn0003416 sl "small wing" [Drosophila melanogaster (taxid:7227)]

 Score = 415 (151.1 bits), Expect = 1.6e-37, P = 1.6e-37
 Identities = 77/137 (56%), Positives = 107/137 (78%)

Query:    14 NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
             +KAMQ+N AKFR NG CGY+L+P+FM S+S++P +P    G++ VKV +R++AARHL R 
Sbjct:  1066 DKAMQLNQAKFRNNGQCGYILKPSFMKSDSFNPNNPLC-DGLSEVKVSIRLIAARHLFRG 1124

Query:    74 GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD 133
             G+ + +P + VE++GA +DTG+K  TK V++NGFNP WNESCEF V NP+ A+LRF  QD
Sbjct:  1125 GK-SNNPQIVVELIGASFDTGVKYRTK-VNENGFNPVWNESCEFNVRNPQFAILRFEVQD 1182

Query:   134 EDMFGDSNFIGQATYPV 150
             EDMF +++FI QA YP+
Sbjct:  1183 EDMFAETHFIAQACYPL 1199

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=IEA;NAS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007298 "border follicle cell migration" evidence=IGI

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IGI

GO:0030307 "positive regulation of cell growth" evidence=IMP

GO:0032868 "response to insulin stimulus" evidence=IGI

GO:0045596 "negative regulation of cell differentiation" evidence=IMP

UNIPROTKB|F1PS03 PLCG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 354 (129.7 bits), Expect = 5.0e-31, P = 5.0e-31
 Identities = 68/138 (49%), Positives = 92/138 (66%)

Query:    14 NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
             +K MQ+N A F   G CGY+L+P+ M  E++DP+D +SL G+    + + VL ARHL ++
Sbjct:   972 DKPMQMNQALFMAGGHCGYVLQPSTMRDEAFDPFDKSSLRGLEPYAICIEVLGARHLPKN 1031

Query:    74 GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWN-ESCEFTVHNPEMALLRFVCQ 132
             GR    PFVE+EV GA+YD+ +K  T+ V DNG NP W  +   F + NPE A LRFV  
Sbjct:  1032 GRGIVCPFVEIEVAGAEYDS-IKQKTEFVVDNGLNPVWPAKPFHFQISNPEFAFLRFVVY 1090

Query:   133 DEDMFGDSNFIGQATYPV 150
             +EDMF D NF+ QAT+PV
Sbjct:  1091 EEDMFSDQNFLAQATFPV 1108

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=IEA

GO:0050852 "T cell receptor signaling pathway" evidence=IEA

GO:0045766 "positive regulation of angiogenesis" evidence=IEA

GO:0043536 "positive regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0035254 "glutamate receptor binding" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005168 "neurotrophin TRKA receptor binding" evidence=IEA

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1MYF9 PLCG1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" [Bos taurus (taxid:9913)]

 Score = 354 (129.7 bits), Expect = 5.0e-31, P = 5.0e-31
 Identities = 68/138 (49%), Positives = 92/138 (66%)

Query:    14 NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
             +K MQ+N A F   G CGY+L+P+ M  E++DP+D +SL G+    + + VL ARHL ++
Sbjct:   972 DKPMQMNQALFLAGGHCGYVLQPSVMRDEAFDPFDKSSLRGLEPCAICIEVLGARHLPKN 1031

Query:    74 GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWN-ESCEFTVHNPEMALLRFVCQ 132
             GR    PFVE+EV GA+YD+ +K  T+ V DNG NP W  +   F + NPE A LRFV  
Sbjct:  1032 GRGIVCPFVEIEVAGAEYDS-IKQKTEFVVDNGLNPVWPAKPFHFQISNPEFAFLRFVVY 1090

Query:   133 DEDMFGDSNFIGQATYPV 150
             +EDMF D NF+ QAT+PV
Sbjct:  1091 EEDMFSDQNFLAQATFPV 1108

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=IEA

GO:0050852 "T cell receptor signaling pathway" evidence=IEA

GO:0045766 "positive regulation of angiogenesis" evidence=IEA

GO:0043536 "positive regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0035254 "glutamate receptor binding" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005168 "neurotrophin TRKA receptor binding" evidence=IEA

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|P08487 PLCG1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" [Bos taurus (taxid:9913)]

 Score = 354 (129.7 bits), Expect = 5.5e-31, P = 5.5e-31
 Identities = 68/138 (49%), Positives = 92/138 (66%)

Query:    14 NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
             +K MQ+N A F   G CGY+L+P+ M  E++DP+D +SL G+    + + VL ARHL ++
Sbjct:  1044 DKPMQMNQALFLAGGHCGYVLQPSVMRDEAFDPFDKSSLRGLEPCAICIEVLGARHLPKN 1103

Query:    74 GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWN-ESCEFTVHNPEMALLRFVCQ 132
             GR    PFVE+EV GA+YD+ +K  T+ V DNG NP W  +   F + NPE A LRFV  
Sbjct:  1104 GRGIVCPFVEIEVAGAEYDS-IKQKTEFVVDNGLNPVWPAKPFHFQISNPEFAFLRFVVY 1162

Query:   133 DEDMFGDSNFIGQATYPV 150
             +EDMF D NF+ QAT+PV
Sbjct:  1163 EEDMFSDQNFLAQATFPV 1180

GO:0001701 "in utero embryonic development" evidence=ISS

GO:0008180 "signalosome" evidence=ISS

GO:0030027 "lamellipodium" evidence=ISS

GO:0001726 "ruffle" evidence=ISS

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=ISS

GO:0010634 "positive regulation of epithelial cell migration" evidence=ISS

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1SDV6 PLCG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 353 (129.3 bits), Expect = 7.1e-31, P = 7.1e-31
 Identities = 68/138 (49%), Positives = 91/138 (65%)

Query:    14 NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
             +K MQ+N A F   G CGY+L+P+ M  E++DP+D +SL G+    + + VL ARHL ++
Sbjct:  1055 DKPMQMNQALFMAGGHCGYVLQPSTMRDEAFDPFDKSSLRGLEPCAICVEVLGARHLPKN 1114

Query:    74 GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESC-EFTVHNPEMALLRFVCQ 132
             GR    PFVE+EV GA+YD+ +K  T+ V DNG NP W      F + NPE A LRFV  
Sbjct:  1115 GRGIVCPFVEIEVAGAEYDS-IKQKTEFVVDNGLNPVWPAKLFHFQISNPEFAFLRFVVY 1173

Query:   133 DEDMFGDSNFIGQATYPV 150
             +EDMF D NF+ QAT+PV
Sbjct:  1174 EEDMFSDQNFLAQATFPV 1191

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=IEA

GO:0050852 "T cell receptor signaling pathway" evidence=IEA

GO:0045766 "positive regulation of angiogenesis" evidence=IEA

GO:0043536 "positive regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0035254 "glutamate receptor binding" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005168 "neurotrophin TRKA receptor binding" evidence=IEA

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

RGD|3347 Plcg1 "phospholipase C, gamma 1" [Rattus norvegicus (taxid:10116)]

 Score = 350 (128.3 bits), Expect = 1.5e-30, P = 1.5e-30
 Identities = 68/138 (49%), Positives = 91/138 (65%)

Query:    14 NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
             +K MQ+N A F   G CGY+L+P+ M  E++DP+D +SL G+    + + VL ARHL ++
Sbjct:  1044 DKPMQMNQALFMAGGHCGYVLQPSTMRDEAFDPFDKSSLRGLEPCVICIEVLGARHLPKN 1103

Query:    74 GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWN-ESCEFTVHNPEMALLRFVCQ 132
             GR    PFVE+EV GA+YD+  K  T+ V DNG NP W  +   F + NPE A LRFV  
Sbjct:  1104 GRGIVCPFVEIEVAGAEYDS-TKQKTEFVVDNGLNPVWPAKPFHFQISNPEFAFLRFVVY 1162

Query:   133 DEDMFGDSNFIGQATYPV 150
             +EDMF D NF+ QAT+PV
Sbjct:  1163 EEDMFSDQNFLAQATFPV 1180

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0001726 "ruffle" evidence=IEA;ISO;ISS

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=IEA;ISO

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005158 "insulin receptor binding" evidence=IDA

GO:0005168 "neurotrophin TRKA receptor binding" evidence=IEA;ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;TAS

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO;TAS

GO:0006816 "calcium ion transport" evidence=IMP

GO:0007165 "signal transduction" evidence=TAS

GO:0008180 "signalosome" evidence=IEA;ISO;ISS

GO:0009306 "protein secretion" evidence=IMP

GO:0009395 "phospholipid catabolic process" evidence=IEA

GO:0009629 "response to gravity" evidence=IEP

GO:0010243 "response to organic nitrogen" evidence=IEP

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA;ISO;IMP

GO:0030027 "lamellipodium" evidence=IEA;ISO;ISS

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA;ISO

GO:0032959 "inositol trisphosphate biosynthetic process" evidence=IMP

GO:0035254 "glutamate receptor binding" evidence=IEA;ISO

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0043278 "response to morphine" evidence=IEP

GO:0043536 "positive regulation of blood vessel endothelial cell migration" evidence=IEA;ISO

GO:0045766 "positive regulation of angiogenesis" evidence=IEA;ISO

GO:0050852 "T cell receptor signaling pathway" evidence=IEA;ISO

GO:0051219 "phosphoprotein binding" evidence=IPI

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=IEA;ISO;ISS

GO:1901339 "regulation of store-operated calcium channel activity" evidence=IMP

GO:0043005 "neuron projection" evidence=IDA

UNIPROTKB|P10686 Plcg1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" [Rattus norvegicus (taxid:10116)]

 Score = 350 (128.3 bits), Expect = 1.5e-30, P = 1.5e-30
 Identities = 68/138 (49%), Positives = 91/138 (65%)

Query:    14 NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
             +K MQ+N A F   G CGY+L+P+ M  E++DP+D +SL G+    + + VL ARHL ++
Sbjct:  1044 DKPMQMNQALFMAGGHCGYVLQPSTMRDEAFDPFDKSSLRGLEPCVICIEVLGARHLPKN 1103

Query:    74 GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWN-ESCEFTVHNPEMALLRFVCQ 132
             GR    PFVE+EV GA+YD+  K  T+ V DNG NP W  +   F + NPE A LRFV  
Sbjct:  1104 GRGIVCPFVEIEVAGAEYDS-TKQKTEFVVDNGLNPVWPAKPFHFQISNPEFAFLRFVVY 1162

Query:   133 DEDMFGDSNFIGQATYPV 150
             +EDMF D NF+ QAT+PV
Sbjct:  1163 EEDMFSDQNFLAQATFPV 1180

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

MGI|MGI:97615 Plcg1 "phospholipase C, gamma 1" [Mus musculus (taxid:10090)]

 Score = 350 (128.3 bits), Expect = 1.5e-30, P = 1.5e-30
 Identities = 68/138 (49%), Positives = 91/138 (65%)

Query:    14 NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
             +K MQ+N A F   G CGY+L+P+ M  E++DP+D +SL G+    + + VL ARHL ++
Sbjct:  1044 DKPMQMNQALFMAGGHCGYVLQPSTMRDEAFDPFDKSSLRGLEPCVICIEVLGARHLPKN 1103

Query:    74 GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWN-ESCEFTVHNPEMALLRFVCQ 132
             GR    PFVE+EV GA+YD+  K  T+ V DNG NP W  +   F + NPE A LRFV  
Sbjct:  1104 GRGIVCPFVEIEVAGAEYDS-TKQKTEFVVDNGLNPVWPAKPFHFQISNPEFAFLRFVVY 1162

Query:   133 DEDMFGDSNFIGQATYPV 150
             +EDMF D NF+ QAT+PV
Sbjct:  1163 EEDMFSDQNFLAQATFPV 1180

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001726 "ruffle" evidence=ISO

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=ISO

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005158 "insulin receptor binding" evidence=ISO

GO:0005168 "neurotrophin TRKA receptor binding" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006816 "calcium ion transport" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0008180 "signalosome" evidence=ISO

GO:0009306 "protein secretion" evidence=ISO

GO:0009395 "phospholipid catabolic process" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=ISO

GO:0016042 "lipid catabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030027 "lamellipodium" evidence=ISO

GO:0030971 "receptor tyrosine kinase binding" evidence=IPI

GO:0032959 "inositol trisphosphate biosynthetic process" evidence=ISO

GO:0035254 "glutamate receptor binding" evidence=IPI

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0043005 "neuron projection" evidence=ISO

GO:0043536 "positive regulation of blood vessel endothelial cell migration" evidence=ISO

GO:0045766 "positive regulation of angiogenesis" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050852 "T cell receptor signaling pathway" evidence=IDA

GO:0051219 "phosphoprotein binding" evidence=ISO

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=ISO

GO:1901339 "regulation of store-operated calcium channel activity" evidence=ISO

UNIPROTKB|F1NHI1 PLCG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 347 (127.2 bits), Expect = 2.5e-30, P = 2.5e-30
 Identities = 69/138 (50%), Positives = 92/138 (66%)

Query:    14 NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
             +K MQ+N A F  +G CGY+L+PA M  + +DP+D ++L GV  + + + VL ARHL ++
Sbjct:   976 DKPMQMNQALFLSSGQCGYVLQPANMRDDIFDPFDKSTLRGVEPLSISIEVLGARHLPKN 1035

Query:    74 GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWN-ESCEFTVHNPEMALLRFVCQ 132
             GR    PFVEVEV GA+YD   K  T+ V+DNG NP W+ +   F V NPE A LRFV  
Sbjct:  1036 GRGIVCPFVEVEVSGAEYDNA-KQKTEIVADNGLNPLWSPKQFHFQVSNPEFAFLRFVVY 1094

Query:   133 DEDMFGDSNFIGQATYPV 150
             +EDMF D NF+ QAT+ V
Sbjct:  1095 EEDMFSDENFLAQATFLV 1112

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|F1NN68 PLCG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 347 (127.2 bits), Expect = 2.8e-30, P = 2.8e-30
 Identities = 69/138 (50%), Positives = 92/138 (66%)

Query:    14 NKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
             +K MQ+N A F  +G CGY+L+PA M  + +DP+D ++L GV  + + + VL ARHL ++
Sbjct:   972 DKPMQMNQALFLSSGQCGYVLQPANMRDDIFDPFDKSTLRGVEPLSISIEVLGARHLPKN 1031

Query:    74 GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWN-ESCEFTVHNPEMALLRFVCQ 132
             GR    PFVEVEV GA+YD   K  T+ V+DNG NP W+ +   F V NPE A LRFV  
Sbjct:  1032 GRGIVCPFVEVEVSGAEYDNA-KQKTEIVADNGLNPLWSPKQFHFQVSNPEFAFLRFVVY 1090

Query:   133 DEDMFGDSNFIGQATYPV 150
             +EDMF D NF+ QAT+ V
Sbjct:  1091 EEDMFSDENFLAQATFLV 1108

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=IEA

GO:0005168 "neurotrophin TRKA receptor binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0035254 "glutamate receptor binding" evidence=IEA

GO:0043536 "positive regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0045766 "positive regulation of angiogenesis" evidence=IEA

GO:0050852 "T cell receptor signaling pathway" evidence=IEA

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	156
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	3e-37
smart00239	101	smart00239, C2, Protein kinase C conserved region	8e-19
pfam00168	85	pfam00168, C2, C2 domain	1e-18
PLN02952	599	PLN02952, PLN02952, phosphoinositide phospholipase	4e-16
cd00030	102	cd00030, C2, C2 domain	5e-15
PLN02222	581	PLN02222, PLN02222, phosphoinositide phospholipase	8e-14
PLN02230	598	PLN02230, PLN02230, phosphoinositide phospholipase	1e-11
PLN02223	537	PLN02223, PLN02223, phosphoinositide phospholipase	3e-11
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	7e-11
PLN02228	567	PLN02228, PLN02228, Phosphoinositide phospholipase	3e-09
smart00149	115	smart00149, PLCYc, Phospholipase C, catalytic doma	4e-09
pfam00387	117	pfam00387, PI-PLC-Y, Phosphatidylinositol-specific	5e-09
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	2e-07
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	4e-07
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	4e-07
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	1e-06
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	6e-06
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	8e-06
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	9e-06
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	2e-05
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	4e-05
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	1e-04
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	2e-04
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	5e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	6e-04
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	0.001
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	0.002
cd08395	120	cd08395, C2C_Munc13, C2 domain third repeat in Mun	0.003
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	0.003
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	0.004

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score =  123 bits (312), Expect = 3e-37
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 4/96 (4%)

Query: 58  VKVLLRVLAARHLTRSGRCTTS---PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES 114
           + + +++++ + L +      S   P+VEVE+ G   D   K  TK V +NGFNP WNE+
Sbjct: 2   LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNET 61

Query: 115 CEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
            EF V  PE+A LRFV  DED   D +F+GQA  P+
Sbjct: 62  FEFDVTVPELAFLRFVVYDEDSGDD-DFLGQACLPL 96

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 76.0 bits (187), Expect = 8e-19
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 59  KVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
            + +++++AR+L    +   S P+V+V + G   D   K  TK V +   NP WNE+ EF
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDG---DPKEKKKTKVVKNTL-NPVWNETFEF 56

Query: 118 TVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
            V  PE+A L     D+D FG  +FIGQ T P+
Sbjct: 57  EVPPPELAELEIEVYDKDRFGRDDFIGQVTIPL 89

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 75.0 bits (185), Expect = 1e-18
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 62  LRVLAARHLT-RSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVH 120
           + V++A++L  +     + P+V+V + G          TK V +   NP WNE+  F V 
Sbjct: 3   VTVISAKNLPPKDLNGKSDPYVKVSLGG---QKKDTKKTKVVKNT-LNPVWNETFTFEVT 58

Query: 121 NPEMALLRFVCQDEDMFGDSNFIGQAT 147
            PE+A LR    D D FG  +FIG+ T
Sbjct: 59  LPELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|178538 PLN02952, PLN02952, phosphoinositide phospholipase C

 Score = 73.9 bits (181), Expect = 4e-16
 Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 10/144 (6%)

Query: 15  KAMQVNHAKFRMNGGCGYLLRPAFMF-----SESYDPYDPTSLVGVTRVKVLLRVLAARH 69
           K++ + H  FR NGGCGYL +P F+       E +DP     +    +VKV L       
Sbjct: 426 KSLWLMHGMFRANGGCGYLKKPDFLMKKGFHDEVFDPKKKLPVKKTLKVKVYLGDGWRLD 485

Query: 70  LTRSGRCTTSP---FVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMAL 126
            + +   + SP   + ++ ++G   D   K  TK + DN + P WNE   F +  PE+AL
Sbjct: 486 FSHTHFDSYSPPDFYTKMYIVGVPADNA-KKKTKIIEDN-WYPAWNEEFSFPLTVPELAL 543

Query: 127 LRFVCQDEDMFGDSNFIGQATYPV 150
           LR   ++ DM    +F GQ   PV
Sbjct: 544 LRIEVREYDMSEKDDFGGQTCLPV 567

Length = 599

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 66.3 bits (162), Expect = 5e-15
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 62  LRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVH 120
           + V+ AR+L        S P+V+V + G       K  TK V +   NP WNE+ EF V 
Sbjct: 3   VTVIEARNLPAKDLNGKSDPYVKVSLGG-----KQKFKTKVVKNT-LNPVWNETFEFPVL 56

Query: 121 NPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
           +PE   L     D+D F   +F+G+   P+
Sbjct: 57  DPESDTLTVEVWDKDRFSKDDFLGEVEIPL 86

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|177868 PLN02222, PLN02222, phosphoinositide phospholipase C 2

 Score = 67.4 bits (164), Expect = 8e-14
 Identities = 49/156 (31%), Positives = 71/156 (45%), Gaps = 17/156 (10%)

Query: 7   YNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDP--YDPTSLVGVTRVKVLLRV 64
           +N Q    +++ +    FR NGGCGY+ +P  +     D   +DP + +    VK  LRV
Sbjct: 401 FNMQG-YGRSLWLMQGMFRANGGCGYIKKPDLLLKSGSDSDIFDPKATL---PVKTTLRV 456

Query: 65  LAA---------RHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESC 115
                       RH           +  V + G   DT +K  TKT+ DN + P W+E  
Sbjct: 457 TIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMK-KTKTLEDN-WIPAWDEVF 514

Query: 116 EFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVY 151
           EF +  PE+ALLR    + DM    +F GQ   PV+
Sbjct: 515 EFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVW 550

Length = 581

>gnl|CDD|177875 PLN02230, PLN02230, phosphoinositide phospholipase C 4

 Score = 60.9 bits (147), Expect = 1e-11
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 15  KAMQVNHAKFRMNGGCGYLLRPAFMFS-----ESYDPYDPTSLVGVTRVKVLLRVLAARH 69
           +A+ +    FR NGGCGY+ +P F+       + + P D +      +VKV +       
Sbjct: 425 RALWLMEGMFRANGGCGYVKKPDFLMDAGPNGQDFYPKDNSCPKKTLKVKVCMGDGWLLD 484

Query: 70  LTRSGRCTTSP---FVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMAL 126
             ++   + SP   FV V + GA  D  ++ T   +  + + P WN+   F +  PE+AL
Sbjct: 485 FKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTK--IEYDTWTPIWNKEFIFPLAVPELAL 542

Query: 127 LRFVCQDEDMFGDSNFIGQATYPV 150
           LR    + D+    +F GQ   PV
Sbjct: 543 LRVEVHEHDINEKDDFGGQTCLPV 566

Length = 598

>gnl|CDD|165867 PLN02223, PLN02223, phosphoinositide phospholipase C

 Score = 59.7 bits (144), Expect = 3e-11
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 24  FRMNGGCGYLLRPAFMF----SESYDPYDPTSLVGVTRVKVLL-RVLAARHLTRSGRCTT 78
           FR NGGCGY+ +P F+     S  + P +   +V + +VK+ +          R GR + 
Sbjct: 375 FRANGGCGYVKKPDFLLNAGPSGVFYPTENPVVVKILKVKIYMGDGWIVDFKKRIGRLSK 434

Query: 79  SP-FVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137
              +V + + G  +D   K+   TV +N + PTW E   F +  P++AL+ F   D ++ 
Sbjct: 435 PDLYVRISIAGVPHDE--KIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVS 492

Query: 138 GDSNFIGQATYPV 150
               F GQ   PV
Sbjct: 493 TADAFCGQTCLPV 505

Length = 537

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 55.9 bits (135), Expect = 7e-11
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 54  GVTRVKVL-LRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWN 112
           GV RV V+  + LAA+  +  G+    P+  + V GA      +  T+T+  N  NP WN
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKS--DPYAILSV-GAQ-----RFKTQTI-PNTLNPKWN 51

Query: 113 ESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQA 146
             CEF + + +  LL+ +  D+D F   +++G+ 
Sbjct: 52  YWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEF 85

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|177873 PLN02228, PLN02228, Phosphoinositide phospholipase C

 Score = 54.3 bits (130), Expect = 3e-09
 Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 19/155 (12%)

Query: 7   YNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGV-TRVKVLLRVL 65
           +N Q    K + +    FR NGGCGY+ +P  +  E +  +DP   + + T +KV  ++ 
Sbjct: 383 FNMQGH-GKQLWIMQGMFRANGGCGYVKKPRILLDE-HTLFDPCKRLPIKTTLKV--KIY 438

Query: 66  AAR------HLTRSGRCTTSP---FVEVEVLGADYDTGLKLTTKTVSDNGFNPTW-NESC 115
                    HLT   +   SP   FV++ + G   DT +   T+T  D  F P W N+  
Sbjct: 439 TGEGWDLDFHLTHFDQ--YSPPDFFVKIGIAGVPRDT-VSYRTETAVDQWF-PIWGNDEF 494

Query: 116 EFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
            F +  PE+ALL F  QD D    ++F GQ   P+
Sbjct: 495 LFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPL 529

Length = 567

>gnl|CDD|128454 smart00149, PLCYc, Phospholipase C, catalytic domain (part); domain Y

 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query: 15  KAMQVNHAKFRMNGGCGYLLRPAFM 39
           K MQ+N   FR NGGCGY+L+P F+
Sbjct: 91  KPMQLNQGMFRANGGCGYVLKPDFL 115

Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme appears to be a homologue of the mammalian PLCs. Length = 115

>gnl|CDD|215891 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase C, Y domain

 Score = 51.0 bits (123), Expect = 5e-09
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 15  KAMQVNHAKFRMNGGCGYLLRPAFM 39
             MQ+N A F  NG CGY+L+P F+
Sbjct: 92  LGMQLNEAMFADNGRCGYVLKPEFL 116

This associates with pfam00388 to form a single structural unit. Length = 117

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)

Query: 64  VLAARHLT---RSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVH 120
           V++A +L    R+G+  + PFV+  +   + +   K  TKT+     NP WNES E  V 
Sbjct: 5   VISAENLPSADRNGK--SDPFVKFYL---NGEKVFK--TKTIKKT-LNPVWNESFEVPVP 56

Query: 121 NPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
           +   A+L+    D D  G  + +G A   +
Sbjct: 57  SRVRAVLKVEVYDWDRGGKDDLLGSAYIDL 86

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 64  VLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP 122
           VL AR L    R  TS PFV V   G   +T        V  + + P WNE  EF +   
Sbjct: 6   VLEARDLAPKDRNGTSDPFVRVFYNGQTLET------SVVKKSCY-PRWNEVFEFELMEG 58

Query: 123 EMALLRFVCQDEDMFGDSNFIGQATYPV 150
             + L     D D+   ++F+G+  + +
Sbjct: 59  ADSPLSVEVWDWDLVSKNDFLGKVVFSI 86

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 59  KVLLRVLAARHLT-RSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
           K+++ V+ A+ L  + G+ ++S +VE+     D+D G K  T+T   +  NP WNE   F
Sbjct: 1   KLVVEVVDAQDLMPKDGQGSSSAYVEL-----DFD-GQKKRTRTKPKD-LNPVWNEKLVF 53

Query: 118 TVHNPE 123
            V +P 
Sbjct: 54  NVSDPS 59

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 14/95 (14%)

Query: 53  VGVTRVKVLLRV-LAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW 111
           +G+ +V+V+    LA R  T     ++ P+V V  LG       K+ T+ +  N  NP W
Sbjct: 1   LGLLKVRVVRGTNLAVRDFT-----SSDPYV-VLTLGNQ-----KVKTRVIKKN-LNPVW 48

Query: 112 NESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQA 146
           NE    +V NP MA L+    D+D F   + +G+A
Sbjct: 49  NEELTLSVPNP-MAPLKLEVFDKDTFSKDDSMGEA 82

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 99  TKTVSDNGFNPTWNESCEFTVHNPE---MALLRFVCQDEDMFGDSNFIGQATYPV 150
           +K    +G NP WNE  +FTV  P       L     D+D F D +FIG+AT  +
Sbjct: 37  SKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHL 91

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 42.3 bits (100), Expect = 8e-06
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 11/100 (11%)

Query: 54  GVTRVKVL-LRVLAA--RHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPT 110
           GV R+ V+  + L A  + +    +  + P+V V V GA         +K + +N  NP 
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRV-GAQ-----TFKSKVIKEN-LNPK 53

Query: 111 WNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
           WNE  E  V       L     DED     +F+G+ +  +
Sbjct: 54  WNEVYEAVVDEVPGQELEIELFDEDP-DKDDFLGRLSIDL 92

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 20/113 (17%)

Query: 39  MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
           + S SY P            ++ + VL AR+L  S     S P+V+V +L      G KL
Sbjct: 4   LLSLSYLP--------TAE-RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQ----GGKKL 50

Query: 98  TTK--TVSDNGFNPTWNESCEFTV---HNPEMALLRFVCQDEDMFGDSNFIGQ 145
             K  +V     NP +NE+  F V      E++L+  V  D+D  G +  IGQ
Sbjct: 51  KKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV-DKDSVGRNEVIGQ 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 12/95 (12%)

Query: 59  KVLLRVLAARHL---TRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESC 115
           ++++ ++  R L     +G+    P+ EV +   ++       TK VSD   NP WN S 
Sbjct: 16  RLMVVIVEGRDLKPCNSNGKS--DPYCEVSMGSQEH------KTKVVSDT-LNPKWNSSM 66

Query: 116 EFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
           +F V + E  +L     D D F   +F+G+    V
Sbjct: 67  QFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRV 101

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 13/93 (13%)

Query: 64  VLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT---- 118
           VL AR L   G+  T+  +V +++    Y T       +V +   +P W E C F     
Sbjct: 5   VLQARGLLCKGKSGTNDAYVIIQLGKEKYST-------SVKEKTTSPVWKEECSFELPGL 57

Query: 119 -VHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
              N   A L+      ++ G   F+GQ + P+
Sbjct: 58  LSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPL 90

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 62  LRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVH 120
           +RVL A ++T+    +T   +VE+ +  A   +  K  TKT+  N  NP WNE+ EF + 
Sbjct: 4   VRVLRATNITKGDLLSTPDCYVELWLPTA---SDEKKRTKTI-KNSINPVWNETFEFRIQ 59

Query: 121 NPEMALLRFVCQDEDMFGD 139
           +    +L     DED   D
Sbjct: 60  SQVKNVLELTVMDEDYVMD 78

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 23/117 (19%)

Query: 40  FSESYDPYDPTSLVGVTRVKVLLRVLAARHLT-RSGRCTTS-PFVEVEVLGADYD---TG 94
           FS  YD  +    V          ++ AR+L  R+       PFV+V +L  +     + 
Sbjct: 5   FSVQYDLEEEQLTV---------SLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSK 55

Query: 95  LKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDEDMFGDSNFIGQATYP 149
           +K  T+       NP ++E+  F V   E+    LR    D D F     IG   +P
Sbjct: 56  VKRKTQ-------NPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFP 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 12/99 (12%)

Query: 53  VGVTRVKVLLRVLAARHLTRSGRCTTS--PFVEVEVLGADYDTGLKLTTKTVSDNGFNPT 110
           +GV  V +     +AR L  S     +  P+V   +            TK   D   NP 
Sbjct: 1   IGVLAVTIK----SARGLKGSDIIGGTVDPYVTFSISNRREL----ARTKVKKDT-SNPV 51

Query: 111 WNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYP 149
           WNE+    V N     L     D +       IG A + 
Sbjct: 52  WNETKYILV-NSLTEPLNLTVYDFNDKRKDKLIGTAEFD 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 79  SPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG 138
           SP+ E+ +     +  L  TT+       NP+WN S EF V +   + +  V +D+    
Sbjct: 14  SPYAELYL-----NGKLVYTTRVKKKTN-NPSWNASTEFLVTDRRKSRVTVVVKDDRDRH 67

Query: 139 D 139
           D
Sbjct: 68  D 68

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 80  PFVEVEVLGAD-YDTGLKLTTKTVSDNGFNPTWNESCEFTV----HNPEMALLRFVCQDE 134
           PFV+VE+L    +       T+        P ++ES EF V     + E ALL F  +D 
Sbjct: 39  PFVKVELLPRHLFPDVPTPKTQVKKKT-LFPLFDESFEFNVPPEQCSVEGALLLFTVKDY 97

Query: 135 DMFGDSNFIGQATYP 149
           D+ G ++F G+A  P
Sbjct: 98  DLLGSNDFEGEAFLP 112

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 18/81 (22%)

Query: 40  FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTR---SGRCTTSPFVEVEVLGADYDTGLK 96
           FS SYD  + T         + L++L A  L     SG  T+ PFV++ +L    D   K
Sbjct: 7   FSVSYDFQEST---------LTLKILKAVELPAKDFSG--TSDPFVKIYLLP---DKKHK 52

Query: 97  LTTKTVSDNGFNPTWNESCEF 117
           L TK V     NP WNE+  F
Sbjct: 53  LETK-VKRKNLNPHWNETFLF 72

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176041 cd08395, C2C_Munc13, C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 59  KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADY-DTGLKLTTKTVSDNGFNPTWNESCEF 117
           KV ++V+AA  L         PFVEV ++G    D   K  TK+ ++N ++P +NE+ +F
Sbjct: 1   KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNN-WSPKYNETFQF 59

Query: 118 TVHNPE 123
            + N +
Sbjct: 60  ILGNED 65

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins.C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 98  TTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQAT 147
            T+T+ D   NP W+E  E  V   E   +     D    G  +  G+A+
Sbjct: 39  KTRTIYDT-LNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRAS 87

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 59  KVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
           K+ + V+ A+ L    +  TS P+V V+V         K  TKT+  N  NP WNE   F
Sbjct: 2   KISITVVCAQGLIAKDKTGTSDPYVTVQV------GKTKKRTKTIPQN-LNPVWNEKFHF 54

Query: 118 TVHN 121
             HN
Sbjct: 55  ECHN 58

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
PLN02223	537	phosphoinositide phospholipase C	100.0
KOG0169|consensus	746		100.0
PLN02230	598	phosphoinositide phospholipase C 4	100.0
PLN02222	581	phosphoinositide phospholipase C 2	100.0
KOG1264|consensus	1267		100.0
PLN02952	599	phosphoinositide phospholipase C	100.0
PLN02228	567	Phosphoinositide phospholipase C	100.0
KOG1265|consensus	1189		100.0
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.91
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.89
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.88
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.86
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.86
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.86
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.85
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.85
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.85
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.85
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.84
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.84
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.84
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.84
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.84
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.84
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.83
KOG1030|consensus	168		99.83
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.82
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.82
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.82
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.82
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.82
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.81
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.81
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.81
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.81
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.81
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.81
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.81
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.81
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.81
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.81
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.81
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.81
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.8
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.8
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.8
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.8
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.8
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.8
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.79
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.79
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.79
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.79
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.79
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.79
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.79
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.78
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.78
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.78
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.78
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.78
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.78
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.78
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.78
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.77
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.77
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.77
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.77
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.76
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.76
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.76
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.76
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.76
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.76
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.75
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.75
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.75
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.75
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.74
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.74
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.74
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.74
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.74
KOG0696|consensus	683		99.74
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.74
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.74
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.74
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.73
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.73
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.72
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.72
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.72
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.72
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.72
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.7
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.69
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.68
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.67
KOG1028|consensus	421		99.67
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.56
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.54
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.53
PF00387	118	PI-PLC-Y: Phosphatidylinositol-specific phospholip	99.53
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.53
KOG1028|consensus	421		99.52
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.51
PLN03008	868	Phospholipase D delta	99.5
KOG1011|consensus	1283		99.48
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.47
smart00149	115	PLCYc Phospholipase C, catalytic domain (part); do	99.46
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.42
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.33
KOG1328|consensus	1103		99.2
PLN02270	808	phospholipase D alpha	99.04
KOG1011|consensus	1283		99.01
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.01
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.98
KOG2059|consensus	800		98.93
KOG1031|consensus	1169		98.77
KOG0905|consensus	1639		98.63
KOG1013|consensus	362		98.56
KOG1326|consensus	1105		98.53
KOG2059|consensus	800		98.5
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.3
KOG1328|consensus	1103		98.29
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.2
PLN02352	758	phospholipase D epsilon	98.19
PLN02964	644	phosphatidylserine decarboxylase	98.01
KOG1013|consensus	362		98.01
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.88
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	97.86
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.82
KOG1327|consensus	529		97.73
KOG1326|consensus	1105		97.57
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	97.55
KOG2060|consensus	405		97.53
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	97.34
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	97.32
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	97.0
KOG3837|consensus	523		96.8
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	96.66
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	96.53
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	96.24
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	96.09
PF15627	156	CEP76-C2: CEP76 C2 domain	95.8
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.03
KOG1327|consensus	529		94.54
KOG1452|consensus	442		93.93
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	92.8
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	92.26
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	91.54
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	90.19
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	86.04
KOG0904|consensus	1076		85.72

>PLN02223 phosphoinositide phospholipase C

Probab=100.00  E-value=7.1e-45  Score=288.65  Aligned_cols=147  Identities=24%  Similarity=0.462  Sum_probs=129.2

Q ss_pred             ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC----CCCCCCCCCCCceeeEEEEEEEeeeeecccC----
Q psy12820          2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE----SYDPYDPTSLVGVTRVKVLLRVLAARHLTRS----   73 (156)
Q Consensus         2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~----~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~----   73 (156)
                      -|||||||| |.|.+||||+|||+.||+|||||||++||+.    .|+|...    ...+..|+|+|++|++++..    
T Consensus       354 cQmVALN~Q-T~d~~M~LN~G~F~~NG~CGYVLKP~~Lr~~~~~~~FdP~~~----~~~~~~L~V~Visgq~~~~~~~k~  428 (537)
T PLN02223        354 AQLIALSRK-DDKEKLWLMQGMFRANGGCGYVKKPDFLLNAGPSGVFYPTEN----PVVVKILKVKIYMGDGWIVDFKKR  428 (537)
T ss_pred             eeEeeeccC-CCChhHHhhcchhccCCCCCceECChhhccCCcccccCCCCC----cccceEEEEEEEEcccccCCcccc
Confidence            499999999 9999999999999999999999999999985    4777532    23467899999999987521    


Q ss_pred             -C-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECC
Q psy12820         74 -G-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVY  151 (156)
Q Consensus        74 -~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~  151 (156)
                       + .+..||||+|++.|.+.|.. +++|+ +.+||+||+|||+|.|.+..|+++.|+|.|+|+|..+.++|+|++++|+.
T Consensus       429 ~~~~s~~DpyV~VeI~Gvp~D~~-~~kT~-v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~  506 (537)
T PLN02223        429 IGRLSKPDLYVRISIAGVPHDEK-IMKTT-VKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVS  506 (537)
T ss_pred             cCCCCCCCeEEEEEEeeccCCcc-eeEEE-eCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchH
Confidence             1 35679999999999998887 77786 66778999999999999999999999999999998888999999999999


Q ss_pred             CCCC
Q psy12820        152 TNRF  155 (156)
Q Consensus       152 ~l~~  155 (156)
                      +||+
T Consensus       507 ~Lr~  510 (537)
T PLN02223        507 ELIE  510 (537)
T ss_pred             HhcC
Confidence            9986

>KOG0169|consensus

Probab=100.00  E-value=1e-44  Score=292.90  Aligned_cols=149  Identities=36%  Similarity=0.685  Sum_probs=134.4

Q ss_pred             ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC--CCCCCCCCCCCceeeEEEEEEEeeeeecccC-C----
Q psy12820          2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPTSLVGVTRVKVLLRVLAARHLTRS-G----   74 (156)
Q Consensus         2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~--~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~-~----   74 (156)
                      .|||||||| |+++.||||+|||+.||+|||||||.+||++  .|+|..  .++...+ +|.|+|++|++++.. .    
T Consensus       562 ~QmVAlN~Q-t~G~~l~L~~G~Fr~NGgCGYVlKP~~L~~~~~~F~P~~--~~~~~~~-tL~IkI~sGq~~~~~~~~~~~  637 (746)
T KOG0169|consen  562 CQMVALNFQ-TPGRMLDLNQGMFRANGGCGYVLKPDFLLDSGSTFDPKS--NLPPVKK-TLKIKIISGQGWLPDFGKTKF  637 (746)
T ss_pred             ceEEEEecC-CCChhhhhhhhhhccCCCccceECcHHHcCCCCccCCCC--CCCCCCc-eeEEEEEecCcccCCCCCCcc
Confidence            499999999 9999999999999999999999999999994  588832  2344445 899999999976553 2    


Q ss_pred             CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820         75 RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus        75 ~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ...+||||.|++.|.+.|.. +.+|+++++||+||.|+|+|+|++..||++.|+|.|+|+|..++|||+||+++|+.+|+
T Consensus       638 ~~~~dP~v~VeI~Gvp~D~~-~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~  716 (746)
T KOG0169|consen  638 GEISDPDVYVEIAGVPADCA-EQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELR  716 (746)
T ss_pred             cccCCCCEEEEEcccccchh-hhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhh
Confidence            35789999999999999998 99999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q psy12820        155 F  155 (156)
Q Consensus       155 ~  155 (156)
                      +
T Consensus       717 ~  717 (746)
T KOG0169|consen  717 Q  717 (746)
T ss_pred             C
Confidence            6

>PLN02230 phosphoinositide phospholipase C 4

Probab=100.00  E-value=2.5e-44  Score=289.92  Aligned_cols=147  Identities=28%  Similarity=0.473  Sum_probs=128.6

Q ss_pred             ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC-----CCCCCCCCCCCceeeEEEEEEEeeeeecccC---
Q psy12820          2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE-----SYDPYDPTSLVGVTRVKVLLRVLAARHLTRS---   73 (156)
Q Consensus         2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~-----~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~---   73 (156)
                      .|||||||| |+|++||||+|||+.||+|||||||++||..     .|+|....    ..+.+|+|+|++|++++..   
T Consensus       413 cQMVALN~Q-t~d~~M~LN~G~F~~NG~CGYVLKP~~Lr~~~~~~~~fdP~~~~----~~~~~L~V~VisGq~~~l~~~k  487 (598)
T PLN02230        413 AQMIAFNMQ-GYGRALWLMEGMFRANGGCGYVKKPDFLMDAGPNGQDFYPKDNS----CPKKTLKVKVCMGDGWLLDFKK  487 (598)
T ss_pred             eEEeeeccc-CCChHHHhhcchhccCCCCCceECCHHhcCCCccccccCCCcCC----CcCcEEEEEEEEccCccCCCcc
Confidence            499999999 9999999999999999999999999999984     47776532    2356899999999987522   


Q ss_pred             -C---CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEE
Q psy12820         74 -G---RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYP  149 (156)
Q Consensus        74 -~---~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~  149 (156)
                       .   .+..||||+|.+.|.+.|.. +++|++.. ||+||+|||+|.|++..||++.|+|.|+|+|..+.++|+||+++|
T Consensus       488 ~~~~~~s~~DpyV~Vei~Gvp~D~~-~~kT~v~~-n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lP  565 (598)
T PLN02230        488 THFDSYSPPDFFVRVGIAGAPVDEV-MEKTKIEY-DTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLP  565 (598)
T ss_pred             ccCCCCCCCCceEEEEEEECCCCCc-ccceeccC-CCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcc
Confidence             1   34579999999999988887 78898654 569999999999999999999999999999988889999999999


Q ss_pred             CCCCCC
Q psy12820        150 VYTNRF  155 (156)
Q Consensus       150 l~~l~~  155 (156)
                      +.+||+
T Consensus       566 v~~Lr~  571 (598)
T PLN02230        566 VSEIRQ  571 (598)
T ss_pred             hHHhhC
Confidence            999986

>PLN02222 phosphoinositide phospholipase C 2

Probab=100.00  E-value=6.1e-44  Score=287.25  Aligned_cols=147  Identities=27%  Similarity=0.484  Sum_probs=129.5

Q ss_pred             ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC-----CCCCCCCCCCCceeeEEEEEEEeeeeecc--cC-
Q psy12820          2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE-----SYDPYDPTSLVGVTRVKVLLRVLAARHLT--RS-   73 (156)
Q Consensus         2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~-----~~~p~~~~~~~~~~~~~L~v~v~~a~~L~--~~-   73 (156)
                      .|||||||| |.|.+||||+|||+.||+|||||||++||+.     .|+|....    ....+|+|+|++|++++  .. 
T Consensus       396 ~QmVALN~Q-T~d~~M~LN~G~F~~NG~cGYVLKP~~lr~~~~~~~~fdp~~~~----~~~~~L~V~Visgq~~~l~~~~  470 (581)
T PLN02222        396 AQMVAFNMQ-GYGRSLWLMQGMFRANGGCGYIKKPDLLLKSGSDSDIFDPKATL----PVKTTLRVTIYMGEGWYFDFRH  470 (581)
T ss_pred             cEEeecccc-CCChhhhhhcchhccCCCCceEECCHHhccCCccccccCCCCCC----CccceEEEEEEEcccccCCCCc
Confidence            499999999 9999999999999999999999999999975     46776532    23467999999999753  21 


Q ss_pred             -C---CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEE
Q psy12820         74 -G---RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYP  149 (156)
Q Consensus        74 -~---~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~  149 (156)
                       .   ....||||+|.+.|.+.|.. +++|+++.+| +||+|||+|.|.+..|+++.|+|.|+|+|..+.++|+|++++|
T Consensus       471 ~~~~~~~~~dpyV~Vei~G~p~D~~-~~rTk~v~nn-~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lP  548 (581)
T PLN02222        471 THFDQYSPPDFYTRVGIAGVPGDTV-MKKTKTLEDN-WIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLP  548 (581)
T ss_pred             cccCCCCCCCeeEEEEEeccCCCcc-eeeeEecCCC-CCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcc
Confidence             1   34679999999999988887 8899999998 8999999999999999999999999999988889999999999


Q ss_pred             CCCCCC
Q psy12820        150 VYTNRF  155 (156)
Q Consensus       150 l~~l~~  155 (156)
                      +.+||+
T Consensus       549 v~~Lr~  554 (581)
T PLN02222        549 VWELSQ  554 (581)
T ss_pred             hhhhhC
Confidence            999986

>KOG1264|consensus

Probab=100.00  E-value=8.6e-44  Score=287.86  Aligned_cols=151  Identities=49%  Similarity=0.861  Sum_probs=144.4

Q ss_pred             eeeeecCcccCChhhhccccccccCCceeEEecCCcccCCCCCCCCCCCCCceeeEEEEEEEeeeeecccCCCCCCCCEE
Q psy12820          3 REFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFV   82 (156)
Q Consensus         3 ~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~dpyv   82 (156)
                      |||||||| |.|++||+|+|+|..||+|||||||.+||...|||..++...+..+.+|.|+|+.|++|++.+.+...|||
T Consensus      1011 qmVALN~Q-TgDKpMQmNqa~F~~ngrcGYvLqPs~Mrte~fdP~n~e~~~~l~p~~lsv~vigaRHL~k~gr~i~cPfV 1089 (1267)
T KOG1264|consen 1011 QMVALNFQ-TGDKPMQMNQALFSLNGRCGYVLQPSSMRTEKFDPMNPESQRGLLPMTLSVKVLGARHLPKLGRSIACPFV 1089 (1267)
T ss_pred             eeEEeecc-CCCchhhhhHHHhhcCCceeeEecchhcccccCCCCChHHhccccceEEEEEEeeccccccCCCCccCCcE
Confidence            89999999 99999999999999999999999999999999999998778888899999999999999988888889999


Q ss_pred             EEEEecCCCCCCceEEeEEecCCCCCCeeC-ceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820         83 EVEVLGADYDTGLKLTTKTVSDNGFNPTWN-ESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus        83 ~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~-e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      +|++.|.+.|.. +++|+++..||+||+|| |+|+|.|.+|+.++|+|.|+|.|.++...|||++++|+..|++
T Consensus      1090 evEiiGa~~Dt~-~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1090 EVEIIGAEYDTN-KFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred             EEEEeccccCCC-ceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhc
Confidence            999999999988 88888888899999999 9999999999999999999999999999999999999998875

>PLN02952 phosphoinositide phospholipase C

Probab=100.00  E-value=9.5e-43  Score=281.19  Aligned_cols=147  Identities=30%  Similarity=0.525  Sum_probs=129.6

Q ss_pred             ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC-----CCCCCCCCCCCceeeEEEEEEEeeeeecccCC--
Q psy12820          2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE-----SYDPYDPTSLVGVTRVKVLLRVLAARHLTRSG--   74 (156)
Q Consensus         2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~-----~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~~--   74 (156)
                      .|||||||| |.|++||||+|||+.||+|||||||++||..     .|+|....    ..+..|+|+|++|++++...  
T Consensus       414 ~QmVAlN~Q-t~d~~m~lN~g~F~~NG~cGYVlKP~~lr~~~~~~~~fdp~~~~----~~~~~L~V~VisGq~l~lp~~~  488 (599)
T PLN02952        414 AQMIAFNMQ-GYGKSLWLMHGMFRANGGCGYLKKPDFLMKKGFHDEVFDPKKKL----PVKKTLKVKVYLGDGWRLDFSH  488 (599)
T ss_pred             cEEeeeccc-CCChHHHhhhchhccCCCCCceECCHHHcccCCcccccCCCCCC----CccceEEEEEEECcccCCCCcc
Confidence            499999999 9999999999999999999999999999864     46775431    23468999999999875321  


Q ss_pred             -----CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEE
Q psy12820         75 -----RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYP  149 (156)
Q Consensus        75 -----~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~  149 (156)
                           ....||||+|.+.|.+.|.. +++|+++.+| +||+|||+|.|.+..|+++.++|.|+|+|..+.++|+|++++|
T Consensus       489 ~~~~~~~~~D~yV~V~i~G~p~D~~-~~kTkvi~nN-~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lP  566 (599)
T PLN02952        489 THFDSYSPPDFYTKMYIVGVPADNA-KKKTKIIEDN-WYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLP  566 (599)
T ss_pred             ccCCccCCCCceEEEEEeccCCCCc-ceeeeeccCC-CCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcc
Confidence                 23459999999999988887 8899999998 9999999999999999999999999999988889999999999


Q ss_pred             CCCCCC
Q psy12820        150 VYTNRF  155 (156)
Q Consensus       150 l~~l~~  155 (156)
                      +++|++
T Consensus       567 v~~Lr~  572 (599)
T PLN02952        567 VSELRP  572 (599)
T ss_pred             hhHhcC
Confidence            999986

>PLN02228 Phosphoinositide phospholipase C

Probab=100.00  E-value=4.1e-42  Score=276.05  Aligned_cols=147  Identities=27%  Similarity=0.485  Sum_probs=128.9

Q ss_pred             ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC--CCCCCCCCCCCceeeEEEEEEEeeeeeccc----CC-
Q psy12820          2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPTSLVGVTRVKVLLRVLAARHLTR----SG-   74 (156)
Q Consensus         2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~--~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~----~~-   74 (156)
                      .|||||||| |.|.+||||+|||+.||+|||||||++||..  .|+|....    ..+..|+|+|++|++|+.    .. 
T Consensus       378 ~QmVALN~Q-T~d~~M~lN~g~F~~NG~cGYVLKP~~Lr~~~~~f~p~~~~----p~~~~L~I~ViSGq~l~lp~~~~~~  452 (567)
T PLN02228        378 AQMVAFNMQ-GHGKQLWIMQGMFRANGGCGYVKKPRILLDEHTLFDPCKRL----PIKTTLKVKIYTGEGWDLDFHLTHF  452 (567)
T ss_pred             cEEeeeccc-CCChHHHhhcCchhhCCCCCceeCchhhcccccccCCccCC----CcCceEEEEEEECCccCCCCCCCCC
Confidence            499999999 9999999999999999999999999999985  47776432    124589999999998732    11 


Q ss_pred             --CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCee-CceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECC
Q psy12820         75 --RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW-NESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVY  151 (156)
Q Consensus        75 --~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w-~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~  151 (156)
                        ....||||+|++.|.+.|.. +++|+++.++ +||+| +|+|.|.+..|+++.|+|.|+|+|..+.++|+|++++|++
T Consensus       453 ~~~~~~DpyV~Vei~G~p~D~~-~~rTk~~~n~-~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~  530 (567)
T PLN02228        453 DQYSPPDFFVKIGIAGVPRDTV-SYRTETAVDQ-WFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLP  530 (567)
T ss_pred             CCCCCCCcEEEEEEEecCCCCC-cceeeccCCC-CCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchh
Confidence              23579999999999988887 8899998776 99999 9999999999999999999999998888999999999999


Q ss_pred             CCCC
Q psy12820        152 TNRF  155 (156)
Q Consensus       152 ~l~~  155 (156)
                      +||+
T Consensus       531 ~Lr~  534 (567)
T PLN02228        531 ELKS  534 (567)
T ss_pred             HhhC
Confidence            9986

>KOG1265|consensus

Probab=100.00  E-value=9.4e-37  Score=248.62  Aligned_cols=145  Identities=35%  Similarity=0.577  Sum_probs=133.2

Q ss_pred             eeeeecCcccCChhhhccccccccCCceeEEecCCcccCC--CCCCCCCCCCCceeeEEEEEEEeeeeecccCCCCCCCC
Q psy12820          3 REFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSP   80 (156)
Q Consensus         3 ~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~--~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~dp   80 (156)
                      |||||||| |.|.+||||.|||+.||+|||+|||++||.+  .|||+..+.++++.+.++.|+||+|+-|....   ...
T Consensus       647 QmVsLNfQ-T~dlaMQlN~g~FEyNG~sGYllKPdfmRrpDr~fdPFse~~VdgvIA~t~sV~VISgqFLSdrk---vgt  722 (1189)
T KOG1265|consen  647 QMVSLNFQ-TPDLAMQLNMGMFEYNGGSGYLLKPDFMRRPDRQFDPFSESPVDGVIAATLSVTVISGQFLSDRK---VGT  722 (1189)
T ss_pred             eEEEeecc-CccHHHHhhhhheeecCCccceeChHHhhCCCcCcCCcccCcccceEEeeEEEEEEeeeeccccc---cCc
Confidence            89999999 9999999999999999999999999999987  69999998899999999999999999998665   348


Q ss_pred             EEEEEEecCCCCCC-ceEEeEEecCCCCCCeeCce-EEEE-EeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820         81 FVEVEVLGADYDTG-LKLTTKTVSDNGFNPTWNES-CEFT-VHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus        81 yv~v~l~~~~~~~~-~~~kT~~~~~~~~nP~w~e~-f~f~-v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      ||+|.+.|.+.|.. +++||+++..||+||+|+|. |.|. |-.|+++.|+|.||++.    ..+||+-.+|++.|+.
T Consensus       723 yVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg----gK~ig~RIlpvd~l~~  796 (1189)
T KOG1265|consen  723 YVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG----GKFIGQRILPVDGLNA  796 (1189)
T ss_pred             eEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC----CceeeeeccchhcccC
Confidence            99999999988865 57899999999999999965 9998 88999999999999985    5799999999998864

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.91  E-value=1.3e-23  Score=139.99  Aligned_cols=96  Identities=28%  Similarity=0.425  Sum_probs=80.2

Q ss_pred             EEEEEEeeeeecccCCCCCCCCEEEEEEecCCC-CCCceEEeEEecCCCCCCeeCceEEEEEeCC---CccEEEEEEEec
Q psy12820         59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADY-DTGLKLTTKTVSDNGFNPTWNESCEFTVHNP---EMALLRFVCQDE  134 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~-~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~---~~~~l~~~V~d~  134 (156)
                      +|+|+|++|++|+..+.|.+||||+|++.|... ++.++++|+++.++ +||+|||+|.|.+...   +.+.|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~t-lnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNN-WSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCC-CCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            489999999999887778899999999976322 23336789998776 9999999999999743   335899999999


Q ss_pred             CCCCCCceEEEEEEECCCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      +..+++++||++.+|++++..
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~  100 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQ  100 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcC
Confidence            988889999999999988764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.89  E-value=4.7e-23  Score=136.09  Aligned_cols=92  Identities=13%  Similarity=0.191  Sum_probs=78.8

Q ss_pred             eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEec
Q psy12820         57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDE  134 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d~  134 (156)
                      ..+|+|+|++|++|+ . .+.+||||++++...  ++..+++|++.+++ +||+|||+|.|.+...++.  .|.|+|||+
T Consensus        13 ~~~L~V~vikA~~L~-~-~g~sDPYVKv~L~~~--~k~~k~kT~v~rkt-lnPvfnE~f~F~v~~~~l~~~tL~~~V~d~   87 (118)
T cd08677          13 KAELHVNILEAENIS-V-DAGCECYISGCVSVS--EGQKEAQTALKKLA-LHTQWEEELVFPLPEEESLDGTLTLTLRCC   87 (118)
T ss_pred             CCEEEEEEEEecCCC-C-CCCCCeEEEEEEcCC--cCccEEEcceecCC-CCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence            458999999999998 3 355899999998643  23347899999998 9999999999998865553  899999999


Q ss_pred             CCCCCCceEEEEEEECCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l  153 (156)
                      |.++++++||++.++++++
T Consensus        88 Drfs~~d~IG~v~l~l~~~  106 (118)
T cd08677          88 DRFSRHSTLGELRLKLADV  106 (118)
T ss_pred             CCCCCCceEEEEEEccccc
Confidence            9999999999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.88  E-value=7.1e-22  Score=132.33  Aligned_cols=96  Identities=22%  Similarity=0.293  Sum_probs=81.8

Q ss_pred             eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEE-eC--CCccEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTV-HN--PEMALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v-~~--~~~~~l~~~V~d  133 (156)
                      ..+|.|+|++|++|+..+.+.+||||++.+.+.+.+.. ++||++++++ .||+|||+|.|.+ ..  .....|.|+|||
T Consensus        12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~-~~kT~v~~~~-~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d   89 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTT-KRKTKVVRKT-RNPTFNEMLVYDGLPVEDLQQRVLQVSVWS   89 (122)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCC-ceeCCccCCC-CCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence            45799999999999987777899999999976543334 7899999998 9999999999987 32  234589999999


Q ss_pred             cCCCCCCceEEEEEEECCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ++..+++++||++.++|+++.
T Consensus        90 ~d~~~~~~~lG~~~i~l~~l~  110 (122)
T cd08381          90 HDSLVENEFLGGVCIPLKKLD  110 (122)
T ss_pred             CCCCcCCcEEEEEEEeccccc
Confidence            999999999999999999875

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.86  E-value=5.1e-21  Score=128.70  Aligned_cols=97  Identities=21%  Similarity=0.394  Sum_probs=80.9

Q ss_pred             eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQ  132 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~  132 (156)
                      ..+|.|+|++|++|+..+  .+.+||||++++...+. ...++||++++++ .||+|||+|.|.+...++  ..|.|.||
T Consensus        14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~-~~~~~kT~v~~~t-~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKS-RQSKRKTSIKRNT-TNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCc-cccceEeeeeeCC-CCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            357999999999998764  47899999999864322 2237899999888 999999999999875443  47999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      |++..+++++||++.++++++..
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~  114 (125)
T cd04029          92 HYDRFGRNTFLGEVEIPLDSWNF  114 (125)
T ss_pred             ECCCCCCCcEEEEEEEeCCcccc
Confidence            99999999999999999998753

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.86  E-value=4.3e-21  Score=129.46  Aligned_cols=96  Identities=19%  Similarity=0.288  Sum_probs=81.8

Q ss_pred             eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQ  132 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~  132 (156)
                      ..+|.|+|++|++|+..+  .+.+||||++++........ ++||++++++ .||+|||+|.|.+...++  ..|.+.||
T Consensus        14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~-k~kT~v~~~t-~nPvfNE~F~f~v~~~~l~~~~L~v~V~   91 (128)
T cd08392          14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNS-KRKTAVKKGT-VNPVFNETLKYVVEADLLSSRQLQVSVW   91 (128)
T ss_pred             CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccc-eeecccccCC-CCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence            358999999999998875  37899999999975433333 7899999998 999999999999876544  48999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      |++..+++++||++.|+|+++.
T Consensus        92 ~~~~~~~~~~lG~~~i~L~~~~  113 (128)
T cd08392          92 HSRTLKRRVFLGEVLIPLADWD  113 (128)
T ss_pred             eCCCCcCcceEEEEEEEcCCcc
Confidence            9999889999999999998874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.86  E-value=3.8e-21  Score=129.29  Aligned_cols=95  Identities=20%  Similarity=0.407  Sum_probs=80.9

Q ss_pred             EEEEEEEeeeeecccCC-C-CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         58 VKVLLRVLAARHLTRSG-R-CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~-~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ..|.|+|++|++|+..+ . +.+||||++.+.+...... ++||++++++ .||+|||+|.|.+...++  ..|.|+|||
T Consensus        15 ~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~-~~kT~v~~~t-~nP~~nE~f~f~v~~~~l~~~~L~~~V~d   92 (125)
T cd08393          15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRG-KRKTSVKKKT-LNPVFNETLRYKVEREELPTRVLNLSVWH   92 (125)
T ss_pred             CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccc-cccCccCcCC-CCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence            47999999999999876 3 6899999999975433233 6899999998 999999999999875433  489999999


Q ss_pred             cCCCCCCceEEEEEEECCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ++..+++++||++.++|+++.
T Consensus        93 ~~~~~~~~~iG~~~i~L~~~~  113 (125)
T cd08393          93 RDSLGRNSFLGEVEVDLGSWD  113 (125)
T ss_pred             CCCCCCCcEeEEEEEecCccc
Confidence            999999999999999999864

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.85  E-value=1.5e-20  Score=129.14  Aligned_cols=95  Identities=21%  Similarity=0.305  Sum_probs=80.1

Q ss_pred             eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEE-e
Q psy12820         57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQ-D  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~-d  133 (156)
                      ...|.|+|++|++|+..+  .+.+||||++++....... .++||++++++ +||+|||+|.|.+. .....|.|+|| |
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~-~k~KT~v~kkt-lnPvfNE~F~f~v~-l~~~~L~v~V~~d  104 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCI-AKKKTKIARKT-LDPLYQQQLVFDVS-PTGKTLQVIVWGD  104 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccc-cceeceecCCC-CCCccCCeEEEEEc-CCCCEEEEEEEeC
Confidence            357999999999998753  5689999999997543222 38899999998 99999999999998 45568999999 6


Q ss_pred             cCCCCCCceEEEEEEECCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ++..+++++||++.|+|+++.
T Consensus       105 ~~~~~~~~~iG~~~i~L~~l~  125 (146)
T cd04028         105 YGRMDKKVFMGVAQILLDDLD  125 (146)
T ss_pred             CCCCCCCceEEEEEEEccccc
Confidence            788888999999999999874

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.85  E-value=6.5e-21  Score=127.83  Aligned_cols=97  Identities=16%  Similarity=0.203  Sum_probs=81.9

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d  133 (156)
                      ..+|.|+|++|++|+..+ .+.+||||++++.........++||++++++ .||+|||+|.|++...++.  .|.|+||+
T Consensus        13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t-~nPvfnE~F~f~v~~~~L~~~~L~~~V~~   91 (124)
T cd08680          13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQ-DKPVFNEVFRVPISSTKLYQKTLQVDVCS   91 (124)
T ss_pred             CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCC-CCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence            357999999999998865 5678999999998643322237899999988 9999999999998765554  89999999


Q ss_pred             cCCCCCCceEEEEEEECCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ++..+++++||++.++++++.
T Consensus        92 ~~~~~~~~~lG~~~i~L~~~~  112 (124)
T cd08680          92 VGPDQQEECLGGAQISLADFE  112 (124)
T ss_pred             CCCCCceeEEEEEEEEhhhcc
Confidence            999999999999999998873

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.85  E-value=1.1e-20  Score=127.51  Aligned_cols=95  Identities=22%  Similarity=0.254  Sum_probs=79.9

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc-EEEEEEEec
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA-LLRFVCQDE  134 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~-~l~~~V~d~  134 (156)
                      +.+|+|+|++|++|++.. .+..||||+|++.+.+.+.. ++||++++++..+|+|||+|.|++..++.. .|.++|||+
T Consensus        13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~-KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~   91 (135)
T cd08692          13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLY-KKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR   91 (135)
T ss_pred             CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcce-eecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence            457999999999999863 55679999999997655444 889999998844699999999999865544 777899999


Q ss_pred             CCCCCCceEEEEEEECCC
Q psy12820        135 DMFGDSNFIGQATYPVYT  152 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~  152 (156)
                      +..+++++||++.++.++
T Consensus        92 ~~~~~n~~IG~v~lG~~~  109 (135)
T cd08692          92 SSVRRKHFLGQVWISSDS  109 (135)
T ss_pred             CCCcCCceEEEEEECCcc
Confidence            988899999999999865

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.85  E-value=2.6e-20  Score=124.30  Aligned_cols=87  Identities=18%  Similarity=0.269  Sum_probs=75.8

Q ss_pred             EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820         58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF  137 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~  137 (156)
                      ..|.|+|++|++++..+.+.+||||++.+.     .. +.||+++.+++.||+|||+|.|.+... ...|.|+|||+|.+
T Consensus         2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg-----~~-~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~   74 (121)
T cd04016           2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVG-----HA-VYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAF   74 (121)
T ss_pred             cEEEEEEEEccCCCcCCCCCCCceEEEEEC-----CE-EEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCC
Confidence            479999999998877667899999999983     23 779999987669999999999998754 35799999999999


Q ss_pred             CCCceEEEEEEECC
Q psy12820        138 GDSNFIGQATYPVY  151 (156)
Q Consensus       138 ~~~~~iG~~~i~l~  151 (156)
                      ++|++||.+.+++.
T Consensus        75 ~~dd~iG~~~i~l~   88 (121)
T cd04016          75 TMDERIAWTHITIP   88 (121)
T ss_pred             cCCceEEEEEEECc
Confidence            99999999999995

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.84  E-value=1.1e-20  Score=128.76  Aligned_cols=94  Identities=21%  Similarity=0.276  Sum_probs=79.5

Q ss_pred             eEEEEEEEeeeeecccCC---CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG---RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVC  131 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~---~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V  131 (156)
                      ..+|+|+|++|++|+..+   .+.+||||+|++.... .+..++||++++++ +||+|||+|.|.+...++  ..|.|+|
T Consensus        14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~-~k~~kkkT~v~k~t-~nPvfNE~f~F~v~~~~L~~~~L~~~V   91 (138)
T cd08407          14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQN-AKLKKKQTKRAKHK-INPVWNEMIMFELPSELLAASSVELEV   91 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCC-cccceeccceeeCC-CCCccccEEEEECCHHHhCccEEEEEE
Confidence            357999999999998875   3458999999997543 23347899999988 999999999999886554  4799999


Q ss_pred             EecCCCCCCceEEEEEEECCC
Q psy12820        132 QDEDMFGDSNFIGQATYPVYT  152 (156)
Q Consensus       132 ~d~~~~~~~~~iG~~~i~l~~  152 (156)
                      ||+|..+++++||++.+++..
T Consensus        92 ~d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          92 LNQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             EeCCCCcCcceeceEEecCcC
Confidence            999999999999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.84  E-value=1.3e-20  Score=128.28  Aligned_cols=93  Identities=25%  Similarity=0.331  Sum_probs=78.6

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d~  134 (156)
                      .+|+|+|++|++|+..+ .+.+||||++++.+.+.... ++||++++++ +||+|||+|.|.+...++  ..|.|+|||+
T Consensus        15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~-k~kT~v~k~t-~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~   92 (136)
T cd08406          15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKIS-KKKTSVKRDD-TNPIFNEAMIFSVPAIVLQDLSLRVTVAES   92 (136)
T ss_pred             CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCcccc-ccCCccccCC-CCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence            47999999999999876 67899999999976433223 6789999988 999999999999875444  4899999999


Q ss_pred             CCCCCCceEEEEEEECCC
Q psy12820        135 DMFGDSNFIGQATYPVYT  152 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~  152 (156)
                      |..+++++||++.++...
T Consensus        93 d~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          93 TEDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             CCCCCCCeeEEEEECCCC
Confidence            999999999999997654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.84  E-value=2.7e-20  Score=128.35  Aligned_cols=94  Identities=24%  Similarity=0.347  Sum_probs=78.4

Q ss_pred             EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC-----------C----C
Q psy12820         59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN-----------P----E  123 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~-----------~----~  123 (156)
                      +|+|+|++|++|+. ..+.+||||+|.+.+...+.. +++|++++++ +||+|||+|.|.+..           +    +
T Consensus         1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~-~~kT~v~~~t-~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~   77 (148)
T cd04010           1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQD-TKRTKVKKKT-NNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE   77 (148)
T ss_pred             CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCc-ccCCccEeCC-CCCccceEEEEEEecccccccccccCCccccc
Confidence            48999999999988 567899999999976433233 7899999998 999999999999851           1    2


Q ss_pred             ccEEEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820        124 MALLRFVCQDEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       124 ~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      ...|.|.|||++..++++|||++.|++.++..
T Consensus        78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~  109 (148)
T cd04010          78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDL  109 (148)
T ss_pred             EEEEEEEEEcCCCCCCCceeEEEEEecccccc
Confidence            24789999999988889999999999998763

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.84  E-value=2.3e-20  Score=125.60  Aligned_cols=88  Identities=26%  Similarity=0.477  Sum_probs=76.5

Q ss_pred             EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC-----CCccEEEEEEEe
Q psy12820         60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN-----PEMALLRFVCQD  133 (156)
Q Consensus        60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~-----~~~~~l~~~V~d  133 (156)
                      ++|+|++|++|+..+ .+.+||||++.+.     .. ++||++++++ .||+|||+|.|.+..     +....|.|.|||
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-----~~-~~kT~v~~~t-~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d   73 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-----KE-KYSTSVKEKT-TSPVWKEECSFELPGLLSGNGNRATLQLTVMH   73 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEEC-----Ce-eeeeeeecCC-CCCEeCceEEEEecCcccCCCcCCEEEEEEEE
Confidence            479999999998765 6789999999974     23 7899999998 999999999999876     345689999999


Q ss_pred             cCCCCCCceEEEEEEECCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ++.++++++||++.++++++.
T Consensus        74 ~~~~~~d~~iG~~~i~l~~l~   94 (126)
T cd08682          74 RNLLGLDKFLGQVSIPLNDLD   94 (126)
T ss_pred             ccccCCCceeEEEEEEHHHhh
Confidence            999888999999999998865

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.84  E-value=3.5e-20  Score=121.59  Aligned_cols=89  Identities=20%  Similarity=0.282  Sum_probs=76.2

Q ss_pred             EEEEEEeeeeecccCC-----CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc-EEEEEEE
Q psy12820         59 KVLLRVLAARHLTRSG-----RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA-LLRFVCQ  132 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~-----~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~-~l~~~V~  132 (156)
                      .|.|+|++|++|+..+     .+.+||||++++.     .. ++||++++++ .||+|||.|.|.+...+.. .|.|.||
T Consensus         2 ~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-----~~-~~kT~v~~~t-~nPvWne~f~f~v~~~~~~~~L~~~V~   74 (108)
T cd04039           2 VVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-----RR-VFRTSWRRHT-LNPVFNERLAFEVYPHEKNFDIQFKVL   74 (108)
T ss_pred             EEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-----CE-eEeeeeecCC-CCCcccceEEEEEeCccCCCEEEEEEE
Confidence            5899999999998764     1358999999973     23 6799999998 9999999999998765443 7999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      |++..+++++||++.++|++|.
T Consensus        75 D~d~~~~dd~IG~~~l~L~~l~   96 (108)
T cd04039          75 DKDKFSFNDYVATGSLSVQELL   96 (108)
T ss_pred             ECCCCCCCcceEEEEEEHHHHH
Confidence            9999999999999999998875

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.84  E-value=2.1e-20  Score=124.65  Aligned_cols=96  Identities=23%  Similarity=0.286  Sum_probs=79.5

Q ss_pred             eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc-cEEEEEEEecC
Q psy12820         57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM-ALLRFVCQDED  135 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~-~~l~~~V~d~~  135 (156)
                      ...|.|+|++|++|+..+.+.+||||++++.+...... ++||++++++ .||+|||+|.|.+...+. ..|.|+|||++
T Consensus        11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~-~~kT~v~~~t-~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRF-RQKTSTVPDS-ANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcc-eEeCccccCC-CCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            35799999999999887777899999999976433233 7799999888 999999999999875443 36889999998


Q ss_pred             CCC-CCceEEEEEEECCCCC
Q psy12820        136 MFG-DSNFIGQATYPVYTNR  154 (156)
Q Consensus       136 ~~~-~~~~iG~~~i~l~~l~  154 (156)
                      ..+ ++++||.+.||+.++-
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~  108 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIV  108 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhc
Confidence            765 4689999999998763

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.83  E-value=5.3e-20  Score=121.26  Aligned_cols=92  Identities=17%  Similarity=0.276  Sum_probs=78.4

Q ss_pred             EEEEEEeeeeecccCC-C-CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC---ccEEEEEEEe
Q psy12820         59 KVLLRVLAARHLTRSG-R-CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE---MALLRFVCQD  133 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~-~-~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~---~~~l~~~V~d  133 (156)
                      .|+|+|++|++|+..+ . +.+||||++.+.+.  ... ..+|++++++ .||+|||+|.|.+..++   ...|.|+|||
T Consensus         2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~--~~~-~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d   77 (111)
T cd04041           2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKF--GKP-LYSTRIIRKD-LNPVWEETWFVLVTPDEVKAGERLSCRLWD   77 (111)
T ss_pred             EEEEEEEEeeCCCcccCCCCCCCccEEEEEccC--CCc-cEeeeeECCC-CCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence            6899999999999876 4 78999999998542  123 6799999998 99999999999877552   3589999999


Q ss_pred             cCCCCCCceEEEEEEECCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ++..+++++||++.+++++|.
T Consensus        78 ~d~~~~dd~lG~~~i~l~~l~   98 (111)
T cd04041          78 SDRFTADDRLGRVEIDLKELI   98 (111)
T ss_pred             CCCCCCCCcceEEEEEHHHHh
Confidence            999999999999999998764

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>KOG1030|consensus

Probab=99.83  E-value=4.7e-20  Score=126.78  Aligned_cols=89  Identities=33%  Similarity=0.551  Sum_probs=79.9

Q ss_pred             EEEEEEEeeeeecccCCC-CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC
Q psy12820         58 VKVLLRVLAARHLTRSGR-CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM  136 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~~-~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~  136 (156)
                      ..|+|+|++|.+|...+. +++||||.+.+.     .+ +.||+++.+| +||+|||.|.|.+..+. ..|.+.|||+|.
T Consensus         6 GLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg-----~q-~lkT~~v~~n-~NPeWNe~ltf~v~d~~-~~lkv~VyD~D~   77 (168)
T KOG1030|consen    6 GLLRVRVKRGKNLAIRDFLGSSDPYVVLELG-----NQ-KLKTRVVYKN-LNPEWNEELTFTVKDPN-TPLKVTVYDKDT   77 (168)
T ss_pred             eEEEEEEEeecCeeeeccccCCCCeEEEEEC-----Ce-eeeeeeecCC-CCCcccceEEEEecCCC-ceEEEEEEeCCC
Confidence            579999999999998886 899999999974     34 8899999998 99999999999999764 679999999999


Q ss_pred             CCCCceEEEEEEECCCCC
Q psy12820        137 FGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       137 ~~~~~~iG~~~i~l~~l~  154 (156)
                      ++++|++|.+.|++..+.
T Consensus        78 fs~dD~mG~A~I~l~p~~   95 (168)
T KOG1030|consen   78 FSSDDFMGEATIPLKPLL   95 (168)
T ss_pred             CCcccccceeeeccHHHH
Confidence            999999999999987654

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.82  E-value=1.1e-19  Score=122.68  Aligned_cols=93  Identities=20%  Similarity=0.437  Sum_probs=77.1

Q ss_pred             eEEEEEEEeeeeecccCC-C-CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCCc--cEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG-R-CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPEM--ALLRFVC  131 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~-~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~~--~~l~~~V  131 (156)
                      ..+|+|+|++|++|+..+ . +.+||||++.+...   ...+.||++++++ +||+|||+|.|. +...+.  ..|.|.|
T Consensus        15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~---~~~~~kT~v~~~t-~nP~wnE~F~f~~~~~~~~~~~~L~~~V   90 (128)
T cd08388          15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE---KEHKVKTRVLRKT-RNPVYDETFTFYGIPYNQLQDLSLHFAV   90 (128)
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC---cCceeeccEEcCC-CCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence            458999999999999865 3 78999999998632   2337799999988 999999999994 543222  3799999


Q ss_pred             EecCCCCCCceEEEEEEECCCC
Q psy12820        132 QDEDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       132 ~d~~~~~~~~~iG~~~i~l~~l  153 (156)
                      ||++..+++++||++.++|+++
T Consensus        91 ~d~d~~~~d~~lG~~~i~L~~l  112 (128)
T cd08388          91 LSFDRYSRDDVIGEVVCPLAGA  112 (128)
T ss_pred             EEcCCCCCCceeEEEEEecccc
Confidence            9999999999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.82  E-value=1.1e-19  Score=121.06  Aligned_cols=90  Identities=29%  Similarity=0.479  Sum_probs=77.2

Q ss_pred             EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820         60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG  138 (156)
Q Consensus        60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~  138 (156)
                      |+|+|++|++|+..+ .+.+||||++.+.+.  ... ++||++++++ .||+|||+|.|.+..+....|.|+|||++.. 
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~--~~~-~~kT~vv~~t-~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-   76 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTA--SDE-KKRTKTIKNS-INPVWNETFEFRIQSQVKNVLELTVMDEDYV-   76 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCC--CCc-cCccceecCC-CCCccceEEEEEeCcccCCEEEEEEEECCCC-
Confidence            789999999998875 578999999998532  123 6799999988 9999999999998876556899999999988 


Q ss_pred             CCceEEEEEEECCCCC
Q psy12820        139 DSNFIGQATYPVYTNR  154 (156)
Q Consensus       139 ~~~~iG~~~i~l~~l~  154 (156)
                      ++++||++.++++++.
T Consensus        77 ~~~~iG~~~~~l~~l~   92 (119)
T cd04036          77 MDDHLGTVLFDVSKLK   92 (119)
T ss_pred             CCcccEEEEEEHHHCC
Confidence            7899999999998875

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.82  E-value=9.9e-20  Score=124.34  Aligned_cols=96  Identities=15%  Similarity=0.216  Sum_probs=79.8

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ..+|.|+|++|++|+..+ .+.+||||++.+.........++||++++++ .||+|||+|.|.+...++  ..|.|+|||
T Consensus        14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t-~nPvfnEtF~f~i~~~~l~~~~L~~~V~~   92 (138)
T cd08408          14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQ-PDPEFKETFVFQVALFQLSEVTLMFSVYN   92 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCC-CCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence            357999999999998875 6689999999997532222236799999988 999999999999875444  489999999


Q ss_pred             cCCCCCCceEEEEEEECCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l  153 (156)
                      ++..+++++||++.+++...
T Consensus        93 ~~~~~~~~~iG~v~l~~~~~  112 (138)
T cd08408          93 KRKMKRKEMIGWFSLGLNSS  112 (138)
T ss_pred             CCCCCCCcEEEEEEECCcCC
Confidence            99999999999999988754

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.82  E-value=1.7e-19  Score=122.93  Aligned_cols=92  Identities=27%  Similarity=0.464  Sum_probs=80.9

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED  135 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~  135 (156)
                      ...|+|+|++|++|+..+ .+.+||||++.+.     .. +.+|++++++ .||.|||+|.|.+..+....|.|+|||++
T Consensus        14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-----~~-~~kT~vi~~t-~nP~Wne~f~f~v~~~~~~~l~i~V~D~d   86 (136)
T cd08375          14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-----SQ-EHKTKVVSDT-LNPKWNSSMQFFVKDLEQDVLCITVFDRD   86 (136)
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CE-eeeccccCCC-CCCccCceEEEEecCccCCEEEEEEEECC
Confidence            368999999999998875 6789999999973     23 7899999988 99999999999998777778999999999


Q ss_pred             CCCCCceEEEEEEECCCCCC
Q psy12820        136 MFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       136 ~~~~~~~iG~~~i~l~~l~~  155 (156)
                      ..+++++||++.+++.++..
T Consensus        87 ~~~~d~~lG~~~i~l~~l~~  106 (136)
T cd08375          87 FFSPDDFLGRTEIRVADILK  106 (136)
T ss_pred             CCCCCCeeEEEEEEHHHhcc
Confidence            99889999999999987653

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.82  E-value=1.3e-19  Score=121.57  Aligned_cols=94  Identities=28%  Similarity=0.439  Sum_probs=79.4

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ...|+|+|++|++|+..+ .+.+||||++.+.+.  ... +++|++++++ .||+|||+|.|.+...++  ..|.|+|||
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~--~~~-~~kT~v~~~t-~nP~wne~f~f~i~~~~l~~~~l~~~V~d   90 (124)
T cd08385          15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD--KKK-KFETKVHRKT-LNPVFNETFTFKVPYSELGNKTLVFSVYD   90 (124)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcC--CCC-ceecccCcCC-CCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence            357999999999998765 668899999998642  223 7899999888 999999999999875433  489999999


Q ss_pred             cCCCCCCceEEEEEEECCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ++..+++++||++.++++++.
T Consensus        91 ~d~~~~~~~lG~~~i~l~~~~  111 (124)
T cd08385          91 FDRFSKHDLIGEVRVPLLTVD  111 (124)
T ss_pred             CCCCCCCceeEEEEEecCccc
Confidence            999989999999999999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.81  E-value=4.9e-19  Score=119.05  Aligned_cols=95  Identities=42%  Similarity=0.772  Sum_probs=82.1

Q ss_pred             EEEEEEEeeeeecccCC---CCCCCCEEEEEEecCCC-CCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEe
Q psy12820         58 VKVLLRVLAARHLTRSG---RCTTSPFVEVEVLGADY-DTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD  133 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~---~~~~dpyv~v~l~~~~~-~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d  133 (156)
                      ..|+|+|++|++|+..+   .+..||||++++.+.+. +.. +.||+++.+++.||.|||+|.|.+..++...|.|+|||
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~-~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d   80 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSA-KFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYD   80 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCC-cEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEe
Confidence            57999999999998765   57889999999986543 334 78999988885699999999999988877889999999


Q ss_pred             cCCCCCCceEEEEEEECCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ++.. ++++||++.+++++|.
T Consensus        81 ~~~~-~~~~iG~~~~~l~~l~  100 (128)
T cd00275          81 EDSG-DDDFLGQACLPLDSLR  100 (128)
T ss_pred             CCCC-CCcEeEEEEEEhHHhc
Confidence            9887 7899999999998874

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.81  E-value=1.9e-19  Score=119.67  Aligned_cols=88  Identities=23%  Similarity=0.391  Sum_probs=75.7

Q ss_pred             EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820         59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF  137 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~  137 (156)
                      .|+|+|++|++|+..+ .+.+||||++.+.+     . +.+|+++.+++.||+|||+|.|.+..+....|.|+|||++..
T Consensus         2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~-~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~   75 (118)
T cd08681           2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-----V-TKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR   75 (118)
T ss_pred             EEEEEEEEccCCCCCCcCCCCCceEEEEECC-----C-ccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence            6899999999998875 67899999999742     2 678888766558999999999999876667899999999887


Q ss_pred             CCCceEEEEEEECCCC
Q psy12820        138 GDSNFIGQATYPVYTN  153 (156)
Q Consensus       138 ~~~~~iG~~~i~l~~l  153 (156)
                      + +++||++.++++++
T Consensus        76 ~-~~~iG~~~~~l~~~   90 (118)
T cd08681          76 K-PDLIGDTEVDLSPA   90 (118)
T ss_pred             C-CcceEEEEEecHHH
Confidence            6 89999999999875

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.81  E-value=2.4e-19  Score=120.26  Aligned_cols=94  Identities=27%  Similarity=0.452  Sum_probs=78.6

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC-C--CccEEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN-P--EMALLRFVCQ  132 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~-~--~~~~l~~~V~  132 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+.+...+.. +++|++++++ .||+|||+|.|.+.. .  ....|.|+||
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~v~~~t-~nP~wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKS-KRRTKTVKKT-LNPEWNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccc-cccccccCCC-CCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence            357999999999998875 56899999999875433333 7799999988 999999999998643 2  2358999999


Q ss_pred             ecCCCCCCceEEEEEEECCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYT  152 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~  152 (156)
                      |++..+++++||++.+++++
T Consensus        93 d~~~~~~~~~iG~~~i~l~~  112 (125)
T cd04031          93 DYDRDGENDFLGEVVIDLAD  112 (125)
T ss_pred             eCCCCCCCcEeeEEEEeccc
Confidence            99998889999999999987

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=2.4e-19  Score=120.38  Aligned_cols=87  Identities=24%  Similarity=0.332  Sum_probs=74.3

Q ss_pred             EEEEEeeeee---cccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820         60 VLLRVLAARH---LTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED  135 (156)
Q Consensus        60 L~v~v~~a~~---L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~  135 (156)
                      |.|+|++|++   |+..+ .+.+||||++.+.     .. +.||++++++ .||+|||+|.|.+..+. ..|.|+|||++
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g-----~~-~~rTk~~~~~-~nP~WnE~f~f~v~~~~-~~l~v~V~d~d   73 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG-----PK-WVRTRTVEDS-SNPRWNEQYTWPVYDPC-TVLTVGVFDNS   73 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEEC-----CE-EeEcCcccCC-CCCcceeEEEEEecCCC-CEEEEEEEECC
Confidence            7899999999   66555 7789999999973     33 7799999988 99999999999987654 48999999998


Q ss_pred             CCC------CCceEEEEEEECCCCC
Q psy12820        136 MFG------DSNFIGQATYPVYTNR  154 (156)
Q Consensus       136 ~~~------~~~~iG~~~i~l~~l~  154 (156)
                      ..+      .+++||++.++++++.
T Consensus        74 ~~~~~~~~~~dd~lG~~~i~l~~l~   98 (126)
T cd08379          74 QSHWKEAVQPDVLIGKVRIRLSTLE   98 (126)
T ss_pred             CccccccCCCCceEEEEEEEHHHcc
Confidence            763      7899999999988765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.81  E-value=1.9e-19  Score=124.43  Aligned_cols=90  Identities=23%  Similarity=0.437  Sum_probs=76.5

Q ss_pred             EEEEEEeeeeecccCCC---------------CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC
Q psy12820         59 KVLLRVLAARHLTRSGR---------------CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE  123 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~~---------------~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~  123 (156)
                      +|.|+|++|++|+..+.               +.+||||+|.+.+     . +.||++++++ .||+|||+|.|.+..+.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-----~-~~kT~v~~~t-~nPvWNE~f~f~v~~p~   73 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-----Q-KVKTSVKKNS-YNPEWNEQIVFPEMFPP   73 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-----E-eeecceEcCC-CCCCcceEEEEEeeCCC
Confidence            37899999999998652               3689999999753     2 5689999988 99999999999987655


Q ss_pred             c-cEEEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820        124 M-ALLRFVCQDEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       124 ~-~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      . ..|.|+|||+|..+++++||++.+++.++..
T Consensus        74 ~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~  106 (151)
T cd04018          74 LCERIKIQIRDWDRVGNDDVIGTHFIDLSKISN  106 (151)
T ss_pred             cCCEEEEEEEECCCCCCCCEEEEEEEeHHHhcc
Confidence            4 4899999999999899999999999987653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.81  E-value=2.8e-19  Score=121.32  Aligned_cols=94  Identities=17%  Similarity=0.328  Sum_probs=79.7

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+.+...... +.+|++++++ .||+|||+|.|.+..+++  ..|.|+|||
T Consensus        12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~-~~kT~v~~~t-~nP~wne~f~f~~~~~~l~~~~l~~~V~d   89 (133)
T cd08384          12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKS-KHKTQVKKKT-LNPEFNEEFFYDIKHSDLAKKTLEITVWD   89 (133)
T ss_pred             CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccC-CceeeeEecc-CCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence            458999999999998876 57899999999875432233 7899999988 999999999999876543  479999999


Q ss_pred             cCCCCCCceEEEEEEECCC
Q psy12820        134 EDMFGDSNFIGQATYPVYT  152 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~  152 (156)
                      ++..+++++||++.+++++
T Consensus        90 ~d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          90 KDIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             CCCCCCccEEEEEEEecCC
Confidence            9988889999999999976

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.81  E-value=3.2e-19  Score=119.95  Aligned_cols=96  Identities=23%  Similarity=0.391  Sum_probs=80.2

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ...|+|+|++|++|+..+ .+.+||||++.+.+.+.... ++||++++++ .||+|||+|.|.+...++  ..|.+.|||
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~v~~~~-~nP~wne~f~f~i~~~~l~~~~l~i~v~~   92 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKST-RRKTSVKKDN-LNPVFDETFEFPVSLEELKRRTLDVAVKN   92 (127)
T ss_pred             CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCc-eEecccccCC-CCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence            357999999999999876 57899999999875432233 7899999998 999999999999865433  589999999


Q ss_pred             cCCC--CCCceEEEEEEECCCCC
Q psy12820        134 EDMF--GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~--~~~~~iG~~~i~l~~l~  154 (156)
                      ++..  +++++||++.++++++.
T Consensus        93 ~~~~~~~~~~~iG~~~i~l~~l~  115 (127)
T cd04030          93 SKSFLSREKKLLGQVLIDLSDLD  115 (127)
T ss_pred             CCcccCCCCceEEEEEEeccccc
Confidence            9875  67899999999999874

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.81  E-value=3.5e-19  Score=120.93  Aligned_cols=97  Identities=30%  Similarity=0.416  Sum_probs=80.7

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCC-CCCceEEeEEecCCCCCCeeCceEEEEEeCC----CccEEEEEE
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADY-DTGLKLTTKTVSDNGFNPTWNESCEFTVHNP----EMALLRFVC  131 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~-~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~----~~~~l~~~V  131 (156)
                      ..|+|+|++|++|+..+ .+.+||||+|.+.+... ....++||++++++ +||+|||+|.|.+...    ....|.|+|
T Consensus        16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t-~nP~wnE~f~f~i~~~~~~~~~~~l~~~V   94 (133)
T cd04009          16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKT-LFPLFDESFEFNVPPEQCSVEGALLLFTV   94 (133)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCC-CCCccCCEEEEEechhhcccCCCEEEEEE
Confidence            57999999999998865 57899999999864321 01237899999998 9999999999998753    235899999


Q ss_pred             EecCCCCCCceEEEEEEECCCCCC
Q psy12820        132 QDEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       132 ~d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      ||++..+++++||++.++|+++..
T Consensus        95 ~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          95 KDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EecCCCCCCcEeEEEEEeHHHCCc
Confidence            999999889999999999998763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=1.9e-19  Score=121.31  Aligned_cols=89  Identities=26%  Similarity=0.462  Sum_probs=75.9

Q ss_pred             EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc---cEEEEEEEec
Q psy12820         59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM---ALLRFVCQDE  134 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~---~~l~~~V~d~  134 (156)
                      +|+|+|++|++|+..+ .+.+||||++.+.+     . ++||++++++ .||+|||+|.|.+..++.   ..|.|.|||+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~-~~rT~v~~~t-~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~   73 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-----Q-KKRTRTKPKD-LNPVWNEKLVFNVSDPSRLSNLVLEVYVYND   73 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-----E-EecceeEcCC-CCCccceEEEEEccCHHHccCCeEEEEEeeC
Confidence            4899999999998765 57899999998743     3 7789999887 999999999999875432   4799999999


Q ss_pred             CCCC-CCceEEEEEEECCCCC
Q psy12820        135 DMFG-DSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~~-~~~~iG~~~i~l~~l~  154 (156)
                      +..+ .+++||++.++++++.
T Consensus        74 ~~~~~~d~~lG~v~i~l~~l~   94 (127)
T cd04022          74 RRSGRRRSFLGRVRISGTSFV   94 (127)
T ss_pred             CCCcCCCCeeeEEEEcHHHcC
Confidence            8876 7899999999998876

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.81  E-value=4.1e-19  Score=119.45  Aligned_cols=91  Identities=24%  Similarity=0.262  Sum_probs=77.4

Q ss_pred             eeEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEE-eCCCccEEEEEEEec
Q psy12820         56 TRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTV-HNPEMALLRFVCQDE  134 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v-~~~~~~~l~~~V~d~  134 (156)
                      ...+|+|+|++|++|+....+.+||||+|.+.+     . ++||++++++ .||+|||+|.|.. .......|.|+|||+
T Consensus        26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~-----~-~~kT~vi~~t-~nPvWNE~F~f~~~~~~~~~~L~v~V~D~   98 (127)
T cd04032          26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGG-----Q-EKRTEVIWNN-NNPRWNATFDFGSVELSPGGKLRFEVWDR   98 (127)
T ss_pred             CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECC-----c-cccCceecCC-CCCcCCCEEEEecccCCCCCEEEEEEEeC
Confidence            346899999999999865567889999999742     2 7899999998 9999999999974 334556999999999


Q ss_pred             CCCCCCceEEEEEEECCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l  153 (156)
                      +..+++++||++.+++...
T Consensus        99 d~~s~dd~IG~~~i~l~~~  117 (127)
T cd04032          99 DNGWDDDLLGTCSVVPEAG  117 (127)
T ss_pred             CCCCCCCeeEEEEEEecCC
Confidence            9999999999999998754

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.81  E-value=1.7e-19  Score=118.64  Aligned_cols=89  Identities=28%  Similarity=0.421  Sum_probs=77.3

Q ss_pred             EEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCee-CceEEEEEeCCCc--cEEEEEEEec
Q psy12820         60 VLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW-NESCEFTVHNPEM--ALLRFVCQDE  134 (156)
Q Consensus        60 L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w-~e~f~f~v~~~~~--~~l~~~V~d~  134 (156)
                      |+|+|++|++|+..+  .+.+||||++.+.+     . +.||++++++ +||.| ||+|.|.+...++  ..|.|+|||+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-----~-~~kT~v~~~~-~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~   73 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-----T-TYKTDVVKKS-LNPVWNSEWFRFEVDDEELQDEPLQIRVMDH   73 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECC-----e-eEecceecCC-CCCcccCcEEEEEcChHHcCCCeEEEEEEeC
Confidence            579999999998765  46789999999842     3 8899999988 99999 9999999886543  5899999999


Q ss_pred             CCCCCCceEEEEEEECCCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      +..+++++||++.++++++..
T Consensus        74 d~~~~~~~iG~~~~~l~~l~~   94 (110)
T cd08688          74 DTYSANDAIGKVYIDLNPLLL   94 (110)
T ss_pred             CCCCCCCceEEEEEeHHHhcc
Confidence            999999999999999988754

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.81  E-value=3.6e-19  Score=119.22  Aligned_cols=89  Identities=29%  Similarity=0.459  Sum_probs=77.7

Q ss_pred             EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820         59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF  137 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~  137 (156)
                      +|+|+|++|++|+..+ .+.+||||++.+.+     . +.+|++++++ .||.|||+|.|.+.......|.|+|||++..
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-----~-~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~   73 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG-----Q-TLETSVVKKS-CYPRWNEVFEFELMEGADSPLSVEVWDWDLV   73 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECC-----E-EEeceeecCC-CCCccCcEEEEEcCCCCCCEEEEEEEECCCC
Confidence            4899999999998876 56789999999732     2 6789999988 9999999999998876667899999999999


Q ss_pred             CCCceEEEEEEECCCCC
Q psy12820        138 GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       138 ~~~~~iG~~~i~l~~l~  154 (156)
                      +++++||++.++++++.
T Consensus        74 ~~~~~iG~~~~~l~~l~   90 (123)
T cd04025          74 SKNDFLGKVVFSIQTLQ   90 (123)
T ss_pred             CCCcEeEEEEEEHHHcc
Confidence            98999999999998774

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.80  E-value=5.2e-19  Score=122.36  Aligned_cols=89  Identities=22%  Similarity=0.300  Sum_probs=77.2

Q ss_pred             EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820         60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG  138 (156)
Q Consensus        60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~  138 (156)
                      |+|+|++|++|+..+ .+.+||||++.+.+     . +.+|+++.+++.||+|||+|.|.+..+....+.|.|+|++..+
T Consensus         2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-----~-~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~   75 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-----Q-VLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN   75 (150)
T ss_pred             EEEEEEEeECCCCCCCCCCCCeEEEEEECC-----E-EeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC
Confidence            789999999998876 67899999999842     3 7789988764599999999999987765678999999999888


Q ss_pred             CCceEEEEEEECCCCC
Q psy12820        139 DSNFIGQATYPVYTNR  154 (156)
Q Consensus       139 ~~~~iG~~~i~l~~l~  154 (156)
                      ++++||++.++|+++.
T Consensus        76 ~dd~lG~v~i~L~~l~   91 (150)
T cd04019          76 KDEPLGRAVIPLNDIE   91 (150)
T ss_pred             CCCeEEEEEEEHHHCc
Confidence            8899999999998874

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.80  E-value=6.5e-19  Score=118.14  Aligned_cols=93  Identities=24%  Similarity=0.356  Sum_probs=79.3

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC--ccEEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE--MALLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~--~~~l~~~V~d~  134 (156)
                      ..|.|+|++|++|+..+ .+.+||||++.+...  +.. +.+|++++++ .||+|||+|.|.+...+  ...|.|+|||+
T Consensus        16 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~-~~kT~v~~~t-~~P~wne~f~f~v~~~~l~~~~l~i~V~d~   91 (124)
T cd08387          16 GILNVKLIQARNLQPRDFSGTADPYCKVRLLPD--RSN-TKQSKIHKKT-LNPEFDESFVFEVPPQELPKRTLEVLLYDF   91 (124)
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC--CCC-cEeCceEcCC-CCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence            47999999999998765 678999999998522  233 6899999998 99999999999987544  34899999999


Q ss_pred             CCCCCCceEEEEEEECCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~  154 (156)
                      +..+++++||++.++++++.
T Consensus        92 ~~~~~~~~iG~~~i~l~~~~  111 (124)
T cd08387          92 DQFSRDECIGVVELPLAEVD  111 (124)
T ss_pred             CCCCCCceeEEEEEeccccc
Confidence            99988999999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.80  E-value=7.1e-19  Score=123.17  Aligned_cols=97  Identities=23%  Similarity=0.374  Sum_probs=80.5

Q ss_pred             eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC-Cc--cEEEEEE
Q psy12820         56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP-EM--ALLRFVC  131 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~-~~--~~l~~~V  131 (156)
                      ....|.|+|++|++|+..+ .+.+||||++.+........ ++||++++++ .||+|||+|.|.+... ++  ..|.|+|
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~-~~kT~vi~~t-~nP~WnE~f~f~~~~~~~l~~~~L~i~V  102 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKS-KQKTPVVKKS-VNPVWNHTFVYDGVSPEDLSQACLELTV  102 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCc-ceeCCccCCC-CCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence            4568999999999999876 67899999999864433333 7899999998 9999999999985422 22  4799999


Q ss_pred             EecCCCCCCceEEEEEEECCCCC
Q psy12820        132 QDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       132 ~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ||++..+++++||++.++++++.
T Consensus       103 ~d~d~~~~d~~lG~v~i~l~~~~  125 (162)
T cd04020         103 WDHDKLSSNDFLGGVRLGLGTGK  125 (162)
T ss_pred             EeCCCCCCCceEEEEEEeCCccc
Confidence            99999988999999999998864

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.80  E-value=4.7e-19  Score=118.47  Aligned_cols=96  Identities=20%  Similarity=0.387  Sum_probs=79.8

Q ss_pred             eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC--ccEEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE--MALLRFVCQ  132 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~--~~~l~~~V~  132 (156)
                      ...|+|+|++|++|+..+  .+.+||||++.+.+...... +.+|++++++ .||+|||+|.|.+...+  ...|.|+||
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~v~~~t-~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQS-KRKTSVKKNT-TNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCc-eeeccccCCC-CCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            357999999999998765  56899999999874332223 7899998887 99999999999977543  348999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      |++..+++++||++.++++++.
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~  112 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWD  112 (123)
T ss_pred             eCCCCcCCceeeEEEEeccccc
Confidence            9999889999999999998873

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=6.2e-19  Score=117.78  Aligned_cols=89  Identities=22%  Similarity=0.344  Sum_probs=76.9

Q ss_pred             EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820         59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF  137 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~  137 (156)
                      .|+|+|++|++|+..+ .+.+||||++.+.+    .. ..+|++++++ .||.|||+|.|.+..+. ..|.|+|||++..
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~----~~-~~kT~~~~~t-~nP~Wne~f~f~v~~~~-~~l~~~v~D~d~~   73 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG----KT-VYKSKTIYKN-LNPVWDEKFTLPIEDVT-QPLYIKVFDYDRG   73 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC----EE-EEEeeeccCC-CCCccceeEEEEecCCC-CeEEEEEEeCCCC
Confidence            3889999999998765 67899999998742    23 6899999887 99999999999987543 6899999999999


Q ss_pred             CCCceEEEEEEECCCCC
Q psy12820        138 GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       138 ~~~~~iG~~~i~l~~l~  154 (156)
                      +++++||++.++++++.
T Consensus        74 ~~~~~iG~~~~~l~~l~   90 (121)
T cd04042          74 LTDDFMGSAFVDLSTLE   90 (121)
T ss_pred             CCCcceEEEEEEHHHcC
Confidence            89999999999998865

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=7.1e-19  Score=116.56  Aligned_cols=88  Identities=19%  Similarity=0.369  Sum_probs=77.2

Q ss_pred             EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820         60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG  138 (156)
Q Consensus        60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~  138 (156)
                      ++|+|++|++|+..+ .+.+||||++.+.+     . +.+|++++++ .||.|||+|.|.+..+....|.|+|||++..+
T Consensus         2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~-~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~   74 (116)
T cd08376           2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGN-----E-KYKSKVCSKT-LNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK   74 (116)
T ss_pred             EEEEEEEEECCCCCCCCCCCCcEEEEEECC-----E-eEecccccCC-CCCceeEEEEEEecCCCCCEEEEEEEECCCCC
Confidence            789999999999876 67899999999742     2 6889999887 99999999999988766679999999999988


Q ss_pred             CCceEEEEEEECCCCC
Q psy12820        139 DSNFIGQATYPVYTNR  154 (156)
Q Consensus       139 ~~~~iG~~~i~l~~l~  154 (156)
                      ++++||++.++++++.
T Consensus        75 ~~~~iG~~~~~l~~l~   90 (116)
T cd08376          75 KDEFIGRCEIDLSALP   90 (116)
T ss_pred             CCCeEEEEEEeHHHCC
Confidence            8999999999987764

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.79  E-value=4.3e-19  Score=120.90  Aligned_cols=94  Identities=24%  Similarity=0.367  Sum_probs=78.1

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+.+...... +.||++++++ .||.|+|+|.|.+...+.  ..|.|+|||
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~-~~kT~v~k~t-~nP~w~e~F~f~v~~~~~~~~~l~~~v~d   91 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRIS-KKKTHVKKCT-LNPVFNESFVFDIPSEELEDISVEFLVLD   91 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceee-eEcCccccCC-CCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence            357999999999998875 67899999999864322222 6789988888 999999999999875433  478899999


Q ss_pred             cCCCCCCceEEEEEEECCC
Q psy12820        134 EDMFGDSNFIGQATYPVYT  152 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~  152 (156)
                      ++..+++++||++.+++..
T Consensus        92 ~d~~~~~~~iG~~~~~~~~  110 (136)
T cd08404          92 SDRVTKNEVIGRLVLGPKA  110 (136)
T ss_pred             CCCCCCCccEEEEEECCcC
Confidence            9999999999999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.79  E-value=1.4e-18  Score=116.91  Aligned_cols=88  Identities=25%  Similarity=0.383  Sum_probs=75.5

Q ss_pred             EEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCC
Q psy12820         60 VLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGD  139 (156)
Q Consensus        60 L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~  139 (156)
                      |.|+|++|++|+. ..+.+||||++++..    ...+.+|++++++ .||+|||.|.|.+.. ....|.|+|||++..++
T Consensus         1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~----~~~~~kT~v~~~t-~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~   73 (126)
T cd08678           1 LLVKNIKANGLSE-AAGSSNPYCVLEMDE----PPQKYQSSTQKNT-SNPFWDEHFLFELSP-NSKELLFEVYDNGKKSD   73 (126)
T ss_pred             CEEEEEEecCCCC-CCCCcCCEEEEEECC----CCcEEEeEEEecC-CCCccCceEEEEeCC-CCCEEEEEEEECCCCCC
Confidence            5799999999988 778999999999731    1226899999998 999999999999853 34689999999999888


Q ss_pred             CceEEEEEEECCCCC
Q psy12820        140 SNFIGQATYPVYTNR  154 (156)
Q Consensus       140 ~~~iG~~~i~l~~l~  154 (156)
                      +++||++.++++++.
T Consensus        74 ~~~lG~~~i~l~~l~   88 (126)
T cd08678          74 SKFLGLAIVPFDELR   88 (126)
T ss_pred             CceEEEEEEeHHHhc
Confidence            999999999998764

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.79  E-value=7.8e-19  Score=119.58  Aligned_cols=94  Identities=22%  Similarity=0.333  Sum_probs=78.1

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d~  134 (156)
                      .+|+|+|++|++|+..+ .+.+||||+|.+.+.+.... +++|++++++ .||.|||+|.|.+...++  ..|.|+|||+
T Consensus        15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~-~~kT~v~~~t-~nP~wne~f~f~i~~~~l~~~~l~~~v~d~   92 (136)
T cd08402          15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK-KKKTTIKKRT-LNPYYNESFSFEVPFEQIQKVHLIVTVLDY   92 (136)
T ss_pred             CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccc-eeeccceeCC-CCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence            57999999999998765 67899999999864322223 6789888887 999999999999875443  3799999999


Q ss_pred             CCCCCCceEEEEEEECCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l  153 (156)
                      +..+++++||++.+++...
T Consensus        93 ~~~~~~~~iG~~~i~~~~~  111 (136)
T cd08402          93 DRIGKNDPIGKVVLGCNAT  111 (136)
T ss_pred             CCCCCCceeEEEEECCccC
Confidence            9999999999999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.79  E-value=2.1e-18  Score=115.77  Aligned_cols=90  Identities=18%  Similarity=0.353  Sum_probs=77.1

Q ss_pred             EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820         60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG  138 (156)
Q Consensus        60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~  138 (156)
                      |+|.|++|++|+..+ .+.+||||++.+.+.   .. +.||++++++ +||.|||+|.|.+..++...|.|+|||++..+
T Consensus         2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~---~~-~~kT~~v~~t-~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~   76 (124)
T cd04037           2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK---KI-NDRDNYIPNT-LNPVFGKMFELEATLPGNSILKISVMDYDLLG   76 (124)
T ss_pred             EEEEEEECcCCCCCCCCCCCCcEEEEEECCe---ec-cceeeEEECC-CCCccceEEEEEecCCCCCEEEEEEEECCCCC
Confidence            789999999998876 678999999998432   22 4678888887 99999999999988777789999999999998


Q ss_pred             CCceEEEEEEECCCCC
Q psy12820        139 DSNFIGQATYPVYTNR  154 (156)
Q Consensus       139 ~~~~iG~~~i~l~~l~  154 (156)
                      ++++||++.+++++..
T Consensus        77 ~dd~iG~~~i~l~~~~   92 (124)
T cd04037          77 SDDLIGETVIDLEDRF   92 (124)
T ss_pred             CCceeEEEEEeecccc
Confidence            9999999999997643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.79  E-value=7.6e-19  Score=114.62  Aligned_cols=85  Identities=26%  Similarity=0.394  Sum_probs=74.9

Q ss_pred             EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820         60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG  138 (156)
Q Consensus        60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~  138 (156)
                      |.|+|++|++|+..+ .+.+||||++.+.+     . ++||++++++ .||+|||+|.|.+..++...|.|+|+|++.  
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~-~~kT~v~~~t-~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--   72 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK-----T-TQKSKVKERT-NNPVWEEGFTFLVRNPENQELEIEVKDDKT--   72 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECC-----E-EEeCccccCC-CCCcccceEEEEeCCCCCCEEEEEEEECCC--
Confidence            789999999999875 67899999999853     3 7889998887 999999999999998777899999999875  


Q ss_pred             CCceEEEEEEECCCCC
Q psy12820        139 DSNFIGQATYPVYTNR  154 (156)
Q Consensus       139 ~~~~iG~~~i~l~~l~  154 (156)
                       +++||++.+++.++.
T Consensus        73 -~~~iG~~~i~l~~l~   87 (105)
T cd04050          73 -GKSLGSLTLPLSELL   87 (105)
T ss_pred             -CCccEEEEEEHHHhh
Confidence             689999999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.79  E-value=2.7e-18  Score=116.40  Aligned_cols=93  Identities=27%  Similarity=0.443  Sum_probs=77.7

Q ss_pred             EEEEEeeeeecccCC-CCCCCCEEEEEEecCC-CCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820         60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGAD-YDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF  137 (156)
Q Consensus        60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~-~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~  137 (156)
                      |+|+|++|++|+..+ .+.+||||++.+.+.. .+...+.+|++++++ .||.|||+|.|.+... ...|.|+|||++..
T Consensus         2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~   79 (133)
T cd04033           2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKT-LNPKWNEEFFFRVNPR-EHRLLFEVFDENRL   79 (133)
T ss_pred             EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCC-CCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence            789999999998876 6789999999987541 122236789999887 9999999999998653 45789999999999


Q ss_pred             CCCceEEEEEEECCCCC
Q psy12820        138 GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       138 ~~~~~iG~~~i~l~~l~  154 (156)
                      +++++||++.++++++.
T Consensus        80 ~~~~~iG~~~i~l~~l~   96 (133)
T cd04033          80 TRDDFLGQVEVPLNNLP   96 (133)
T ss_pred             CCCCeeEEEEEEHHHCC
Confidence            89999999999988765

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.79  E-value=2.4e-18  Score=118.26  Aligned_cols=89  Identities=27%  Similarity=0.461  Sum_probs=78.2

Q ss_pred             EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820         58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF  137 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~  137 (156)
                      ..|+|+|++|++|+..+.+.+||||++.+.     .. +.+|++++++ .||+|||+|.|.+..+ ...+.|+|||++.+
T Consensus         2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g-----~~-~~kT~vvk~t-~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~   73 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLG-----NQ-KVKTRVIKKN-LNPVWNEELTLSVPNP-MAPLKLEVFDKDTF   73 (145)
T ss_pred             eEEEEEEEeeECCCCCCCCCcCcEEEEEEC-----CE-EEEeeeEcCC-CCCeecccEEEEecCC-CCEEEEEEEECCCC
Confidence            469999999999987766789999999973     23 7899999988 9999999999998876 56899999999999


Q ss_pred             CCCceEEEEEEECCCCC
Q psy12820        138 GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       138 ~~~~~iG~~~i~l~~l~  154 (156)
                      +++++||++.+++..+.
T Consensus        74 ~~dd~iG~a~i~l~~l~   90 (145)
T cd04038          74 SKDDSMGEAEIDLEPLV   90 (145)
T ss_pred             CCCCEEEEEEEEHHHhh
Confidence            99999999999987753

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.78  E-value=1.3e-18  Score=118.39  Aligned_cols=93  Identities=20%  Similarity=0.367  Sum_probs=75.6

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d~  134 (156)
                      ..|+|+|++|++|+..+ .+.+||||++.+..... ...+++|++++++ .||+|||+|.|.+...++.  .|.|+|||+
T Consensus        14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~-~~~~~kT~v~~~t-~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~   91 (135)
T cd08410          14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLK-LIKTKKTSCMRGT-IDPFYNESFSFKVPQEELENVSLVFTVYGH   91 (135)
T ss_pred             CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCc-ccceEcCccccCC-CCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence            47999999999998875 67899999999853221 2226789998887 9999999999998654443  699999999


Q ss_pred             CCCCCCceEEEEEEECCC
Q psy12820        135 DMFGDSNFIGQATYPVYT  152 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~  152 (156)
                      +..+++++||++.+....
T Consensus        92 d~~~~~~~iG~~~l~~~~  109 (135)
T cd08410          92 NVKSSNDFIGRIVIGQYS  109 (135)
T ss_pred             CCCCCCcEEEEEEEcCcc
Confidence            999999999998876543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.78  E-value=2.8e-18  Score=115.12  Aligned_cols=94  Identities=29%  Similarity=0.441  Sum_probs=77.7

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC---CccEEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP---EMALLRFVCQ  132 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~---~~~~l~~~V~  132 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+...  +.. +.+|++++++ .||+|||+|.|.+...   ....|.|+||
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~--~~~-~~kT~v~~~t-~~P~Wne~f~f~~~~~~~l~~~~l~~~v~   90 (125)
T cd08386          15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPD--KKH-KLETKVKRKN-LNPHWNETFLFEGFPYEKLQQRVLYLQVL   90 (125)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCceEEEEECCC--CCc-ceeeeeecCC-CCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence            357999999999998875 667999999998532  233 6899999988 9999999999974321   2347999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      |++..+++++||++.++++++.
T Consensus        91 d~d~~~~~~~iG~~~i~l~~l~  112 (125)
T cd08386          91 DYDRFSRNDPIGEVSLPLNKVD  112 (125)
T ss_pred             eCCCCcCCcEeeEEEEeccccc
Confidence            9999989999999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.78  E-value=1.5e-18  Score=118.14  Aligned_cols=95  Identities=22%  Similarity=0.318  Sum_probs=78.2

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC--ccEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE--MALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~--~~~l~~~V~d  133 (156)
                      ..+|.|+|++|++|+..+ .+.+||||++.+...+.... +.+|++++++ .||.|||+|.|.+....  ...|.|+|||
T Consensus        14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~-~~kT~v~~~t-~~P~wne~F~f~i~~~~~~~~~l~~~v~d   91 (136)
T cd08405          14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVE-KKKTVIKKRT-LNPVFNESFIFNIPLERLRETTLIITVMD   91 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccc-cccCcceeCC-CCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence            357999999999998765 67899999999864322223 6789999988 99999999999976433  3479999999


Q ss_pred             cCCCCCCceEEEEEEECCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l  153 (156)
                      ++..+++++||++.+++.+.
T Consensus        92 ~~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          92 KDRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             CCCCCCCcEeEEEEECCccC
Confidence            99999999999999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.78  E-value=1.6e-18  Score=118.24  Aligned_cols=92  Identities=23%  Similarity=0.317  Sum_probs=77.1

Q ss_pred             EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEecC
Q psy12820         58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDED  135 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d~~  135 (156)
                      .+|.|+|++|++|+..+.+.+||||++.+.+... ...++||++++++ .||+|||+|.|.+...++  ..|.|.||+++
T Consensus        15 ~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~-~~~~~kT~v~~~~-~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~   92 (137)
T cd08409          15 NRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNK-VVKTKKTEVVDGA-ASPSFNESFSFKVTSRQLDTASLSLSVMQSG   92 (137)
T ss_pred             CeEEEEEEEecCCCcccCCCCCeEEEEEEEECCE-EeeeeecccEeCC-CCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence            5799999999999877677799999999875422 2236789998887 999999999999875444  48999999999


Q ss_pred             CCCCCceEEEEEEECC
Q psy12820        136 MFGDSNFIGQATYPVY  151 (156)
Q Consensus       136 ~~~~~~~iG~~~i~l~  151 (156)
                      ..+++++||++.++..
T Consensus        93 ~~~~~~~lG~v~ig~~  108 (137)
T cd08409          93 GVRKSKLLGRVVLGPF  108 (137)
T ss_pred             CCCCcceEEEEEECCc
Confidence            8889999999999854

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.78  E-value=5e-18  Score=114.26  Aligned_cols=90  Identities=18%  Similarity=0.238  Sum_probs=74.6

Q ss_pred             eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC
Q psy12820         57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM  136 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~  136 (156)
                      ...|+|+|++|++|+..  +.+||||+|.+.+    .. ..||++ +++ .||.|||+|.|.+..++...+.|.|||++.
T Consensus         3 ~~~L~V~Vi~A~~L~~~--~~~DPYv~v~l~~----~~-~~kT~v-~~~-~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~   73 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK--HVPHPYCVISLNE----VK-VARTKV-REG-PNPVWSEEFVFDDLPPDVNSFTISLSNKAK   73 (126)
T ss_pred             eeEEEEEEEEeeCCCCC--CCCCeeEEEEECC----Ee-EEEeec-CCC-CCCccCCEEEEecCCCCcCEEEEEEEECCC
Confidence            35799999999999874  4689999999842    22 567886 455 999999999998776666688999999999


Q ss_pred             CCCCceEEEEEEECCCCCC
Q psy12820        137 FGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       137 ~~~~~~iG~~~i~l~~l~~  155 (156)
                      .+++++||++.+|++++..
T Consensus        74 ~~~d~~iG~v~i~l~~l~~   92 (126)
T cd08400          74 RSKDSEIAEVTVQLSKLQN   92 (126)
T ss_pred             CCCCCeEEEEEEEHhHccC
Confidence            9999999999999987653

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.78  E-value=1.7e-18  Score=116.22  Aligned_cols=93  Identities=23%  Similarity=0.297  Sum_probs=76.3

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCC--ccEEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPE--MALLRFVCQ  132 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~--~~~l~~~V~  132 (156)
                      ..+|.|+|++|++|+..+ .+..||||++.+.+.  ... ++||++++ + .||+|||+|.|+ +...+  ...|.|+||
T Consensus        15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~--~~~-~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~   89 (124)
T cd08389          15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPS--KKQ-RAKTKVQR-G-PNPVFNETFTFSRVEPEELNNMALRFRLY   89 (124)
T ss_pred             CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccC--Ccc-eeeccccc-C-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence            357999999999999875 567899999887643  233 77888765 4 899999999998 65433  348999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      |++..+++++||++.++|+++.
T Consensus        90 ~~~~~~~~~~lG~~~i~L~~l~  111 (124)
T cd08389          90 GVERMRKERLIGEKVVPLSQLN  111 (124)
T ss_pred             ECCCcccCceEEEEEEeccccC
Confidence            9999999999999999999874

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=1.7e-18  Score=115.71  Aligned_cols=84  Identities=26%  Similarity=0.420  Sum_probs=73.8

Q ss_pred             EEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCC
Q psy12820         60 VLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGD  139 (156)
Q Consensus        60 L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~  139 (156)
                      |+|+|++|++|+..   .+||||++.+.+     . +.||++++++ .||+|||+|.|.+..+....|.|+|||++.. +
T Consensus         2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~-----~-~~kT~v~~~t-~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~   70 (121)
T cd08378           2 LYVRVVKARGLPAN---SNDPVVEVKLGN-----Y-KGSTKAIERT-SNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-K   70 (121)
T ss_pred             EEEEEEEecCCCcc---cCCCEEEEEECC-----c-cccccccCCC-CCCccceEEEEEcCCCcCCEEEEEEEeCCCC-c
Confidence            78999999999877   689999999842     3 7799999988 9999999999998766667899999999877 6


Q ss_pred             CceEEEEEEECCCCC
Q psy12820        140 SNFIGQATYPVYTNR  154 (156)
Q Consensus       140 ~~~iG~~~i~l~~l~  154 (156)
                      +++||++.++++++.
T Consensus        71 ~~~lG~~~i~l~~l~   85 (121)
T cd08378          71 DDFLGGVCFDLSEVP   85 (121)
T ss_pred             CceeeeEEEEhHhCc
Confidence            799999999998874

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.78  E-value=4.1e-18  Score=112.19  Aligned_cols=87  Identities=28%  Similarity=0.332  Sum_probs=75.2

Q ss_pred             EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC----ccEEEEEEEe
Q psy12820         58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE----MALLRFVCQD  133 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~----~~~l~~~V~d  133 (156)
                      ..|+|+|++|++|+   .+.+||||++.+.+     . +++|++++++ .||.|||+|.|.+..+.    ...|.|+|||
T Consensus         4 ~~l~V~v~~a~~L~---~~~~dpyv~v~~~~-----~-~~kT~~~~~t-~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d   73 (111)
T cd04011           4 FQVRVRVIEARQLV---GGNIDPVVKVEVGG-----Q-KKYTSVKKGT-NCPFYNEYFFFNFHESPDELFDKIIKISVYD   73 (111)
T ss_pred             EEEEEEEEEcccCC---CCCCCCEEEEEECC-----E-eeeeeEEecc-CCCccccEEEEecCCCHHHHhcCeEEEEEEc
Confidence            57999999999998   56799999999852     3 6789999888 99999999999976543    2489999999


Q ss_pred             cCCCCCCceEEEEEEECCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ++..+++++||++.++++++.
T Consensus        74 ~~~~~~~~~iG~~~i~l~~v~   94 (111)
T cd04011          74 SRSLRSDTLIGSFKLDVGTVY   94 (111)
T ss_pred             CcccccCCccEEEEECCcccc
Confidence            999888999999999999874

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.77  E-value=4e-18  Score=114.00  Aligned_cols=95  Identities=25%  Similarity=0.414  Sum_probs=79.4

Q ss_pred             eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQ  132 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~  132 (156)
                      ...|.|+|++|++|+..+  .+.+||||++++...  +.. ..+|++++++ +||+|||+|.|.+...++  ..|.|.||
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~--~~~-~~~T~v~~~~-~~P~wne~f~f~i~~~~l~~~~l~i~v~   88 (123)
T cd08390          13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPD--ERR-SLQSKVKRKT-QNPNFDETFVFQVSFKELQRRTLRLSVY   88 (123)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeC--CCC-ceEeeeEcCC-CCCccceEEEEEcCHHHhcccEEEEEEE
Confidence            357999999999998875  568899999998532  233 6789998888 999999999999875433  47999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      |++..+++++||++.++|+++..
T Consensus        89 d~~~~~~~~~iG~~~i~L~~l~~  111 (123)
T cd08390          89 DVDRFSRHCIIGHVLFPLKDLDL  111 (123)
T ss_pred             ECCcCCCCcEEEEEEEeccceec
Confidence            99988889999999999998753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.77  E-value=2.4e-18  Score=116.91  Aligned_cols=94  Identities=23%  Similarity=0.340  Sum_probs=76.9

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ..+|+|+|++|++|+..+ .+.+||||++.+...+.... +++|++++++ .||.|||+|.|.+...+.  ..|.|+|||
T Consensus        13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~-~~kT~v~~~t-~nP~wne~f~f~i~~~~~~~~~l~~~v~d   90 (134)
T cd08403          13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLK-KKKTSVKKNT-LNPTYNEALVFDVPPENVDNVSLIIAVVD   90 (134)
T ss_pred             CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccc-eecCCcccCC-CCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence            357999999999999876 67899999999864322223 6788888877 999999999998764333  368999999


Q ss_pred             cCCCCCCceEEEEEEECCC
Q psy12820        134 EDMFGDSNFIGQATYPVYT  152 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~  152 (156)
                      ++..+++++||++.+++..
T Consensus        91 ~~~~~~~~~IG~~~l~~~~  109 (134)
T cd08403          91 YDRVGHNELIGVCRVGPNA  109 (134)
T ss_pred             CCCCCCCceeEEEEECCCC
Confidence            9999999999999998763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.77  E-value=6.9e-18  Score=113.35  Aligned_cols=91  Identities=21%  Similarity=0.367  Sum_probs=77.1

Q ss_pred             EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820         59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF  137 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~  137 (156)
                      .|+|+|++|++|+..+ .+.+||||++.+.+   ......||++++++ .||.|||+|.|.+..+....|.|+|||++..
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~---~~~~~~kT~~~~~t-~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~   77 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTN---GKRRIAKTRTIYDT-LNPRWDEEFELEVPAGEPLWISATVWDRSFV   77 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECC---CCeeeecccEecCC-CCCcccceEEEEcCCCCCCEEEEEEEECCCC
Confidence            5899999999998875 67899999998642   11226799999988 9999999999998876557899999999988


Q ss_pred             CCCceEEEEEEECCCC
Q psy12820        138 GDSNFIGQATYPVYTN  153 (156)
Q Consensus       138 ~~~~~iG~~~i~l~~l  153 (156)
                      +++++||++.++++.+
T Consensus        78 ~~~~~iG~~~i~l~~~   93 (126)
T cd04043          78 GKHDLCGRASLKLDPK   93 (126)
T ss_pred             CCCceEEEEEEecCHH
Confidence            8899999999998764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.77  E-value=6.9e-18  Score=112.81  Aligned_cols=88  Identities=18%  Similarity=0.274  Sum_probs=75.2

Q ss_pred             EEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820         60 VLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF  137 (156)
Q Consensus        60 L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~  137 (156)
                      |+|+|++|++|+..+  .+.+||||+|.+.    +.. ..+|++++++ .||+|||+|.|.+... ...|.|.|||++..
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~----~~~-~~kT~v~~kt-~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~   74 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD----QEE-VFRTKTVEKS-LCPFFGEDFYFEIPRT-FRHLSFYIYDRDVL   74 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC----Ccc-EEEeeEEECC-CCCccCCeEEEEcCCC-CCEEEEEEEECCCC
Confidence            689999999998863  4688999999883    222 6789999998 9999999999998753 36899999999999


Q ss_pred             CCCceEEEEEEECCCCC
Q psy12820        138 GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       138 ~~~~~iG~~~i~l~~l~  154 (156)
                      +++++||.+.++++++.
T Consensus        75 ~~~~~iG~~~i~l~~l~   91 (121)
T cd08401          75 RRDSVIGKVAIKKEDLH   91 (121)
T ss_pred             CCCceEEEEEEEHHHcc
Confidence            99999999999988774

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.76  E-value=1.9e-18  Score=115.95  Aligned_cols=92  Identities=21%  Similarity=0.226  Sum_probs=77.9

Q ss_pred             EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC----ccEEEEEEEe
Q psy12820         59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE----MALLRFVCQD  133 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~----~~~l~~~V~d  133 (156)
                      +|+|+|++|++|+..+ .+..||||+|++.+    .. +.+|+++.+++.||.|||+|.|.+..++    ...|.|+|||
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~-~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d   75 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP----SH-KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYC   75 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC----Cc-ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEE
Confidence            3899999999999876 67899999999853    23 6788887665599999999999988764    4689999999


Q ss_pred             cCCCCCCceEEEEEEECCCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      ++..+++++||++.+++.++..
T Consensus        76 ~~~~~~~~~lG~~~i~l~~l~~   97 (125)
T cd04051          76 ERPSLGDKLIGEVRVPLKDLLD   97 (125)
T ss_pred             CCCCCCCCcEEEEEEEHHHhhc
Confidence            9988889999999999988653

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.76  E-value=1.4e-17  Score=111.44  Aligned_cols=96  Identities=25%  Similarity=0.443  Sum_probs=78.3

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCC--ccEEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPE--MALLRFVCQ  132 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~--~~~l~~~V~  132 (156)
                      ..+|+|+|++|++|+..+ .+.+||||++.+.+...+.. +.+|++++++ .||.|||+|.|. +...+  ...+.|+||
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~-~~rT~v~~~~-~~P~Wne~f~f~~~~~~~~~~~~l~~~v~   91 (123)
T cd04035          14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKAT-KLRTKTVHKT-RNPEFNETLTYYGITEEDIQRKTLRLLVL   91 (123)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCC-ceeeeeecCC-CCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence            357999999999998765 57899999999865433333 7899999988 999999999996 33222  248999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      |++.. .+++||++.+++++|..
T Consensus        92 d~~~~-~~~~iG~~~i~l~~l~~  113 (123)
T cd04035          92 DEDRF-GNDFLGETRIPLKKLKP  113 (123)
T ss_pred             EcCCc-CCeeEEEEEEEcccCCC
Confidence            99887 78999999999998753

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.76  E-value=9.3e-18  Score=113.52  Aligned_cols=96  Identities=23%  Similarity=0.372  Sum_probs=80.7

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC-ccEEEEEEEec
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE-MALLRFVCQDE  134 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~-~~~l~~~V~d~  134 (156)
                      ...|+|+|++|++|+..+ .+.+||||+|.+.+.+.+.. +++|++++++ .+|.|||+|.|.+...+ ...|.|.|||+
T Consensus        12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~-~~rT~v~~~~-~~P~wne~f~~~~~~~~~~~~l~v~v~d~   89 (131)
T cd04026          12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNET-KQKTKTIKKT-LNPVWNETFTFDLKPADKDRRLSIEVWDW   89 (131)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCc-eecceeecCC-CCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence            367999999999998765 56799999999875443334 7899999988 99999999999977553 34899999999


Q ss_pred             CCCCCCceEEEEEEECCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~  154 (156)
                      +..+++++||++.++++++.
T Consensus        90 ~~~~~~~~iG~~~~~l~~l~  109 (131)
T cd04026          90 DRTTRNDFMGSLSFGVSELI  109 (131)
T ss_pred             CCCCCcceeEEEEEeHHHhC
Confidence            98888899999999988764

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.76  E-value=9.6e-18  Score=112.80  Aligned_cols=89  Identities=22%  Similarity=0.506  Sum_probs=77.3

Q ss_pred             EEEEEEeeeeecccCC---CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820         59 KVLLRVLAARHLTRSG---RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED  135 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~---~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~  135 (156)
                      .|+|+|++|++|+..+   .+.+||||++.+.     .. +.+|++++++ .||.|||+|.|.+..+....|.|+|||++
T Consensus         2 ~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-----~~-~~kT~~~~~t-~~P~Wne~f~~~~~~~~~~~l~i~v~d~~   74 (128)
T cd04024           2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-----AQ-RFKTQTIPNT-LNPKWNYWCEFPIFSAQNQLLKLILWDKD   74 (128)
T ss_pred             EEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-----CE-EEecceecCC-cCCccCCcEEEEecCCCCCEEEEEEEECC
Confidence            5899999999998764   4689999999873     23 7899999988 99999999999998755679999999999


Q ss_pred             CCCCCceEEEEEEECCCCC
Q psy12820        136 MFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       136 ~~~~~~~iG~~~i~l~~l~  154 (156)
                      ..+++++||++.++++++.
T Consensus        75 ~~~~~~~lG~~~i~l~~~~   93 (128)
T cd04024          75 RFAGKDYLGEFDIALEEVF   93 (128)
T ss_pred             CCCCCCcceEEEEEHHHhh
Confidence            8888999999999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.76  E-value=1.4e-17  Score=111.56  Aligned_cols=87  Identities=24%  Similarity=0.387  Sum_probs=74.7

Q ss_pred             EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820         60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG  138 (156)
Q Consensus        60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~  138 (156)
                      |+|+|++|++|+..+ .+.+||||++.+.+    .. .+||++++++ .||.|||+|.|.+..  ...|.|+|||++..+
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~----~~-~~kT~v~~~t-~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~   73 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG----GQ-THSTDVAKKT-LDPKWNEHFDLTVGP--SSIITIQVFDQKKFK   73 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECC----cc-ceEccEEcCC-CCCcccceEEEEeCC--CCEEEEEEEECCCCC
Confidence            789999999998776 67899999999742    33 7899999888 999999999999864  568999999998877


Q ss_pred             C--CceEEEEEEECCCCC
Q psy12820        139 D--SNFIGQATYPVYTNR  154 (156)
Q Consensus       139 ~--~~~iG~~~i~l~~l~  154 (156)
                      +  +++||++.++++++.
T Consensus        74 ~~~d~~lG~~~i~l~~l~   91 (123)
T cd08382          74 KKDQGFLGCVRIRANAVL   91 (123)
T ss_pred             CCCCceEeEEEEEHHHcc
Confidence            5  479999999998874

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.76  E-value=5.4e-18  Score=113.11  Aligned_cols=90  Identities=23%  Similarity=0.286  Sum_probs=75.0

Q ss_pred             EeeeeecccCC-CCCCCCEEEEEEecCCC-CCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC----C
Q psy12820         64 VLAARHLTRSG-RCTTSPFVEVEVLGADY-DTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM----F  137 (156)
Q Consensus        64 v~~a~~L~~~~-~~~~dpyv~v~l~~~~~-~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~----~  137 (156)
                      .++|++|+..+ .+.+||||++.+.+... ......+|++++++ .||+|+|+|.|.+..++...|.|+|||++.    .
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t-~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNN-LNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCC-CCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            47899998766 67899999999976531 11226899999998 999999999998776666789999999997    7


Q ss_pred             CCCceEEEEEEECCCCC
Q psy12820        138 GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       138 ~~~~~iG~~~i~l~~l~  154 (156)
                      +++++||++.+++++|.
T Consensus        85 ~~~d~iG~~~i~l~~l~  101 (120)
T cd04048          85 SDHDFLGEAECTLGEIV  101 (120)
T ss_pred             CCCcEEEEEEEEHHHHh
Confidence            88999999999998865

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.75  E-value=1.5e-17  Score=111.55  Aligned_cols=90  Identities=28%  Similarity=0.438  Sum_probs=76.2

Q ss_pred             EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC---ccEEEEEEEec
Q psy12820         59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE---MALLRFVCQDE  134 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~---~~~l~~~V~d~  134 (156)
                      .|+|+|++|++|+..+ .+.+||||++.+.+     . .++|+++++++.||.|||+|.|.+..+.   ...|.|+|||+
T Consensus         2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-----~-~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   75 (124)
T cd04049           2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-----Q-ERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDK   75 (124)
T ss_pred             eEEEEEEecCCCCCCCCCCCcCceEEEEECC-----E-eeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEEC
Confidence            6899999999998765 66899999999732     2 5688887754499999999999998763   45899999999


Q ss_pred             CCCCCCceEEEEEEECCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~  154 (156)
                      +..+++++||++.+++.++.
T Consensus        76 ~~~~~d~~iG~~~i~l~~l~   95 (124)
T cd04049          76 DNFSDDDFIGEATIHLKGLF   95 (124)
T ss_pred             ccCCCCCeEEEEEEEhHHhh
Confidence            98888999999999998864

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.75  E-value=1.9e-17  Score=110.48  Aligned_cols=86  Identities=19%  Similarity=0.220  Sum_probs=71.1

Q ss_pred             EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820         58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF  137 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~  137 (156)
                      ..|.|+|++|++|+..  +..||||++.+.     .. +.+|+++++  .||.|||.|.|.+..... .|.++|||++.+
T Consensus         2 ~~L~V~Vv~Ar~L~~~--~~~dPYV~Ik~g-----~~-k~kT~v~~~--~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~   70 (127)
T cd08394           2 SLLCVLVKKAKLDGAP--DKFNTYVTLKVQ-----NV-KSTTIAVRG--SQPCWEQDFMFEINRLDL-GLVIELWNKGLI   70 (127)
T ss_pred             ceEEEEEEEeeCCCCC--CCCCCeEEEEEC-----CE-EeEeeECCC--CCCceeeEEEEEEcCCCC-EEEEEEEeCCCc
Confidence            4799999999999754  356999999983     23 778888866  499999999999976544 499999999866


Q ss_pred             CCCceEEEEEEECCCCCC
Q psy12820        138 GDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       138 ~~~~~iG~~~i~l~~l~~  155 (156)
                       .||+||++.+||+++..
T Consensus        71 -~DD~lG~v~i~L~~v~~   87 (127)
T cd08394          71 -WDTLVGTVWIPLSTIRQ   87 (127)
T ss_pred             -CCCceEEEEEEhHHccc
Confidence             78999999999998753

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.75  E-value=2.4e-17  Score=110.21  Aligned_cols=88  Identities=20%  Similarity=0.367  Sum_probs=74.8

Q ss_pred             EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820         60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG  138 (156)
Q Consensus        60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~  138 (156)
                      |.|+|++|++|+..+ .+.+||||++.+.+    .. ..||++++++ .||.|||.|.|.+... ...|.|.|||++..+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~----~~-~~kT~v~~~t-~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~   74 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN----EV-IIRTATVWKT-LNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLS   74 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECC----Ee-eeeeeeEcCC-CCCcccceEEEeeCCC-CCEEEEEEEECCCCC
Confidence            789999999998876 67899999998742    22 5699999998 9999999999988643 368999999999999


Q ss_pred             CCceEEEEEEECCCCC
Q psy12820        139 DSNFIGQATYPVYTNR  154 (156)
Q Consensus       139 ~~~~iG~~~i~l~~l~  154 (156)
                      ++++||++.++++.+.
T Consensus        75 ~d~~iG~~~~~~~~~~   90 (121)
T cd04054          75 RDDVIGKVSLTREVIS   90 (121)
T ss_pred             CCCEEEEEEEcHHHhc
Confidence            9999999999976553

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.75  E-value=2.2e-17  Score=108.86  Aligned_cols=84  Identities=21%  Similarity=0.339  Sum_probs=68.5

Q ss_pred             EEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec-----
Q psy12820         60 VLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE-----  134 (156)
Q Consensus        60 L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~-----  134 (156)
                      |.|+|.+|++|+    +.+||||++++.+.. +...+.||++++++ +||+|||+|.|.+..  ...|++.|||+     
T Consensus         1 L~V~V~~A~~L~----~~sDPYV~l~v~~~~-~~~~~~KTk~i~~T-lnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~   72 (118)
T cd08686           1 LNVIVHSAQGFK----QSANLYCTLEVDSFG-YFVKKAKTRVCRDT-TEPNWNEEFEIELEG--SQTLRILCYEKCYSKV   72 (118)
T ss_pred             CEEEEEeCCCCC----CCCCCEEEEEEcCcc-ccceeeeeeeecCC-CCCccceEEEEEeCC--CCEEEEEEEEcccccc
Confidence            579999999995    458999999875432 21237899999998 999999999999863  45899999998     


Q ss_pred             --CCCCCCceEEEEEEECC
Q psy12820        135 --DMFGDSNFIGQATYPVY  151 (156)
Q Consensus       135 --~~~~~~~~iG~~~i~l~  151 (156)
                        |..++|+++|.+.+.|+
T Consensus        73 ~~d~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          73 KLDGEGTDAIMGKGQIQLD   91 (118)
T ss_pred             cccccCcccEEEEEEEEEC
Confidence              46678999998888764

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.74  E-value=2.5e-17  Score=109.52  Aligned_cols=88  Identities=24%  Similarity=0.489  Sum_probs=75.3

Q ss_pred             EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820         59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF  137 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~  137 (156)
                      .|+|+|++|++|+..+ .+.+||||++.+.+     . ..+|++++++ .||.|+|+|.|.+... ...+.|+|||++..
T Consensus         2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~-~~~T~~~~~t-~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~   73 (119)
T cd08377           2 FLQVKVIRASGLAAADIGGKSDPFCVLELVN-----A-RLQTHTIYKT-LNPEWNKIFTFPIKDI-HDVLEVTVYDEDKD   73 (119)
T ss_pred             EEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-----E-eeecceecCC-cCCccCcEEEEEecCc-CCEEEEEEEECCCC
Confidence            6899999999998876 56789999999742     2 5799999988 9999999999997643 36899999999988


Q ss_pred             CCCceEEEEEEECCCCC
Q psy12820        138 GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       138 ~~~~~iG~~~i~l~~l~  154 (156)
                      +++++||++.+++.++.
T Consensus        74 ~~~~~iG~~~~~l~~~~   90 (119)
T cd08377          74 KKPEFLGKVAIPLLSIK   90 (119)
T ss_pred             CCCceeeEEEEEHHHCC
Confidence            88999999999988764

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.74  E-value=2.4e-17  Score=108.97  Aligned_cols=89  Identities=28%  Similarity=0.431  Sum_probs=76.0

Q ss_pred             EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820         60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG  138 (156)
Q Consensus        60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~  138 (156)
                      |+|+|++|++|+..+ .+.+||||++.+.+    .. ..+|+++.++ .+|.|||+|.|.+.......+.|+|||++..+
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~----~~-~~~T~v~~~~-~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~   74 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNG----EK-VFKTKTIKKT-LNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG   74 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECC----Cc-ceeeceecCC-CCCcccccEEEEeccCCCCEEEEEEEeCCCCC
Confidence            578999999998765 56789999999843    22 5789998887 99999999999988665678999999999888


Q ss_pred             CCceEEEEEEECCCCC
Q psy12820        139 DSNFIGQATYPVYTNR  154 (156)
Q Consensus       139 ~~~~iG~~~i~l~~l~  154 (156)
                      ++++||++.+++.++.
T Consensus        75 ~~~~iG~~~~~l~~l~   90 (115)
T cd04040          75 KDDLLGSAYIDLSDLE   90 (115)
T ss_pred             CCCceEEEEEEHHHcC
Confidence            8999999999988764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.74  E-value=4.3e-17  Score=110.94  Aligned_cols=89  Identities=21%  Similarity=0.406  Sum_probs=72.7

Q ss_pred             EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC---------CccEEE
Q psy12820         59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP---------EMALLR  128 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~---------~~~~l~  128 (156)
                      .|+|+|++|++|+..+ .+.+||||+|.+.+     . +.+|++++++ .||.|||+|.|.+...         +...+.
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-----~-~~kT~v~~~t-~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~   74 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN-----Q-SQETEVIKET-LSPTWDQTLIFDEVELYGSPEEIAQNPPLVV   74 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECC-----e-eeEeeeEcCC-CCCccCcEEEEeeeeccCChHHhhcCCCEEE
Confidence            6899999999998866 67899999999742     2 7899999988 9999999999974321         124789


Q ss_pred             EEEEecCCCCCCceEEEEEE-ECCCCC
Q psy12820        129 FVCQDEDMFGDSNFIGQATY-PVYTNR  154 (156)
Q Consensus       129 ~~V~d~~~~~~~~~iG~~~i-~l~~l~  154 (156)
                      |+|||++..+++++||++.+ |+..++
T Consensus        75 v~V~d~d~~~~d~~iG~~~i~~~~~~~  101 (135)
T cd04017          75 VELFDQDSVGKDEFLGRSVAKPLVKLD  101 (135)
T ss_pred             EEEEeCcCCCCCccceEEEeeeeeecc
Confidence            99999999999999999986 544443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.74  E-value=1.8e-17  Score=110.43  Aligned_cols=88  Identities=25%  Similarity=0.396  Sum_probs=75.6

Q ss_pred             EEEEEEeeeeecccCCC-------CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEE
Q psy12820         59 KVLLRVLAARHLTRSGR-------CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVC  131 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~~-------~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V  131 (156)
                      .|+|+|++|++|+..+.       +.+||||++.+.+     . ..+|++++++ .||.|||+|.|.+..+....|.|+|
T Consensus         2 ~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-----~-~~kT~~~~~t-~~P~W~e~f~~~v~~~~~~~l~i~v   74 (121)
T cd08391           2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-----Q-TFKSKVIKEN-LNPKWNEVYEAVVDEVPGQELEIEL   74 (121)
T ss_pred             eEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-----E-eEEccccCCC-CCCcccceEEEEeCCCCCCEEEEEE
Confidence            48999999999987652       5789999999842     3 7899999887 9999999999998766667999999


Q ss_pred             EecCCCCCCceEEEEEEECCCCC
Q psy12820        132 QDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       132 ~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ||++.. ++++||++.++++++.
T Consensus        75 ~d~~~~-~~~~iG~~~i~l~~l~   96 (121)
T cd08391          75 FDEDPD-KDDFLGRLSIDLGSVE   96 (121)
T ss_pred             EecCCC-CCCcEEEEEEEHHHhc
Confidence            999887 7899999999987764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.74  E-value=2.5e-17  Score=112.40  Aligned_cols=92  Identities=25%  Similarity=0.344  Sum_probs=77.2

Q ss_pred             EEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC---------------Cc
Q psy12820         60 VLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP---------------EM  124 (156)
Q Consensus        60 L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~---------------~~  124 (156)
                      |+|+|++|++|+....+.+||||++.+... .... +++|++++++ .+|.|+|+|.|.+...               ..
T Consensus         1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~-~~~~-~~rT~vv~~t-~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~   77 (137)
T cd08675           1 LSVRVLECRDLALKSNGTCDPFARVTLNYS-SKTD-TKRTKVKKKT-NNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEK   77 (137)
T ss_pred             CEEEEEEccCCCcccCCCCCcEEEEEEecC-CcCC-eeccceeeCC-CCCCcceEEEEEccccccccccccccccccccc
Confidence            578999999998765678999999998642 2233 7899999987 9999999999998765               33


Q ss_pred             cEEEEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820        125 ALLRFVCQDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       125 ~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ..|.|+|||++..+++++||++.+++.++.
T Consensus        78 ~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~  107 (137)
T cd08675          78 SELRVELWHASMVSGDDFLGEVRIPLQGLQ  107 (137)
T ss_pred             cEEEEEEEcCCcCcCCcEEEEEEEehhhcc
Confidence            589999999998888999999999998864

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>KOG0696|consensus

Probab=99.74  E-value=1.2e-18  Score=135.07  Aligned_cols=96  Identities=21%  Similarity=0.395  Sum_probs=83.8

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc-EEEEEEEec
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA-LLRFVCQDE  134 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~-~l~~~V~d~  134 (156)
                      ...|+|+|..|++|-+++ +|.+||||++.+...+.... ++||++++.+ +||+|||+|.|.+...+.. .|.++||||
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~s-KqKTkTik~~-LNP~wNEtftf~Lkp~DkdrRlsiEvWDW  256 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNES-KQKTKTIKAT-LNPVWNETFTFKLKPSDKDRRLSIEVWDW  256 (683)
T ss_pred             CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchh-hhhhhhhhhh-cCccccceeEEecccccccceeEEEEecc
Confidence            457889999999998887 89999999999987654444 8999999999 9999999999998865553 888999999


Q ss_pred             CCCCCCceEEEEEEECCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~  154 (156)
                      |..+++||+|..++.+++|.
T Consensus       257 DrTsRNDFMGslSFgisEl~  276 (683)
T KOG0696|consen  257 DRTSRNDFMGSLSFGISELQ  276 (683)
T ss_pred             cccccccccceecccHHHHh
Confidence            99999999999999888764

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.74  E-value=1.7e-17  Score=112.32  Aligned_cols=93  Identities=27%  Similarity=0.386  Sum_probs=78.5

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC--ccEEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE--MALLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~--~~~l~~~V~d~  134 (156)
                      .+|.|+|++|++|+..+ .+..||||++.+.+...... +.+|++++++ .||.|||+|.|.+....  ...|.|+|||.
T Consensus        14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~~T~~~~~~-~~P~wne~f~f~i~~~~l~~~~l~~~v~d~   91 (134)
T cd00276          14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLK-KKKTSVKKGT-LNPVFNEAFSFDVPAEQLEEVSLVITVVDK   91 (134)
T ss_pred             CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEee-eecCcceecC-CCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence            57999999999999875 67899999999875432222 6789998887 99999999999987654  36899999999


Q ss_pred             CCCCCCceEEEEEEECCC
Q psy12820        135 DMFGDSNFIGQATYPVYT  152 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~  152 (156)
                      +..+++++||++.+++++
T Consensus        92 ~~~~~~~~lG~~~i~l~~  109 (134)
T cd00276          92 DSVGRNEVIGQVVLGPDS  109 (134)
T ss_pred             CCCCCCceeEEEEECCCC
Confidence            988888999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.74  E-value=3.8e-17  Score=109.23  Aligned_cols=91  Identities=23%  Similarity=0.277  Sum_probs=76.7

Q ss_pred             EEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820         58 VKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED  135 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~  135 (156)
                      ..|+|+|++|++|+..+  .+.+||||++.+.+.   .. ..+|++++++ .||.|||.|.|.+. +....|.|+|||++
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~-~~kT~~~~~~-~~P~Wne~~~~~v~-~~~~~l~~~v~d~~   75 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RE-LARTKVKKDT-SNPVWNETKYILVN-SLTEPLNLTVYDFN   75 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---Cc-ceEeeeecCC-CCCcceEEEEEEeC-CCCCEEEEEEEecC
Confidence            36899999999998643  456899999998531   23 7899999887 99999999999887 44568999999999


Q ss_pred             CCCCCceEEEEEEECCCCC
Q psy12820        136 MFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       136 ~~~~~~~iG~~~i~l~~l~  154 (156)
                      ..+++++||++.+++.++.
T Consensus        76 ~~~~d~~iG~~~~~l~~l~   94 (124)
T cd04044          76 DKRKDKLIGTAEFDLSSLL   94 (124)
T ss_pred             CCCCCceeEEEEEEHHHhc
Confidence            8888999999999998764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.74  E-value=4.5e-17  Score=110.38  Aligned_cols=90  Identities=20%  Similarity=0.262  Sum_probs=75.6

Q ss_pred             EEEEEEEeeeeecccCCC-----------CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccE
Q psy12820         58 VKVLLRVLAARHLTRSGR-----------CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMAL  126 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~~-----------~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~  126 (156)
                      ..|+|+|++|++|+..+.           +.+||||++.+.+    .. ..+|++++++ .||.|||+|.|.+.  +...
T Consensus         4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~----~~-~~kT~~~~~t-~~P~Wne~f~~~v~--~~~~   75 (132)
T cd04014           4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD----TH-IGKTSTKPKT-NSPVWNEEFTTEVH--NGRN   75 (132)
T ss_pred             eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC----EE-EeEEeEcCCC-CCCCcceeEEEEcC--CCCE
Confidence            579999999999987653           5789999999842    22 4688888887 99999999999986  3478


Q ss_pred             EEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820        127 LRFVCQDEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       127 l~~~V~d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      |.|.|||++..+.+++||++.++|+++..
T Consensus        76 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~  104 (132)
T cd04014          76 LELTVFHDAAIGPDDFVANCTISFEDLIQ  104 (132)
T ss_pred             EEEEEEeCCCCCCCceEEEEEEEhHHhcc
Confidence            99999999988888999999999987753

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.73  E-value=4.1e-17  Score=108.90  Aligned_cols=89  Identities=25%  Similarity=0.326  Sum_probs=76.1

Q ss_pred             EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820         59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF  137 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~  137 (156)
                      .|+|+|++|++|+..+ .+.+||||++.+.+    .. +.+|++++++ .||.|||+|.|.+..+. ..|.|+|||++..
T Consensus         2 ~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~----~~-~~kT~~~~~t-~~P~Wne~f~~~v~~~~-~~L~v~v~d~~~~   74 (120)
T cd04045           2 VLRLHIRKANDLKNLEGVGKIDPYVRVLVNG----IV-KGRTVTISNT-LNPVWDEVLYVPVTSPN-QKITLEVMDYEKV   74 (120)
T ss_pred             eEEEEEEeeECCCCccCCCCcCCEEEEEECC----EE-eeceeEECCC-cCCccCceEEEEecCCC-CEEEEEEEECCCC
Confidence            5889999999999875 67899999999732    22 6788888887 99999999999887653 6899999999999


Q ss_pred             CCCceEEEEEEECCCCC
Q psy12820        138 GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       138 ~~~~~iG~~~i~l~~l~  154 (156)
                      +++++||++.+++.++.
T Consensus        75 ~~d~~IG~~~~~l~~l~   91 (120)
T cd04045          75 GKDRSLGSVEINVSDLI   91 (120)
T ss_pred             CCCCeeeEEEEeHHHhh
Confidence            99999999999987764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.73  E-value=6.2e-17  Score=109.05  Aligned_cols=88  Identities=34%  Similarity=0.502  Sum_probs=73.5

Q ss_pred             EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820         59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF  137 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~  137 (156)
                      +|+|+|++|++|+..+ .+.+||||++.+.     .. +.+|++++++ .||.|||+|.|.+..+ ...|.|+|||+|..
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~-~~kT~~v~~t-~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~   73 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG-----KT-KKRTKTIPQN-LNPVWNEKFHFECHNS-SDRIKVRVWDEDDD   73 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEEC-----CE-eeecceecCC-CCCccceEEEEEecCC-CCEEEEEEEECCCC
Confidence            6899999999999876 6788999999973     22 6789999888 9999999999988654 35799999998853


Q ss_pred             -----------CCCceEEEEEEECCCCC
Q psy12820        138 -----------GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       138 -----------~~~~~iG~~~i~l~~l~  154 (156)
                                 +.+++||++.+++.++.
T Consensus        74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~~  101 (127)
T cd04027          74 IKSRLKQKFTRESDDFLGQTIIEVRTLS  101 (127)
T ss_pred             cccccceeccccCCCcceEEEEEhHHcc
Confidence                       46899999999987653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.72  E-value=1e-16  Score=107.81  Aligned_cols=88  Identities=19%  Similarity=0.376  Sum_probs=74.4

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM  136 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~  136 (156)
                      ..|+|+|++|++|+..+ .+.+||||++.+.+     . +.+|++++++ .||+|||.|.|.+..+ ...|.|+|||++.
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-----~-~~kT~v~~~t-~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~   74 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-----E-SVRSPVQKDT-LSPEFDTQAIFYRKKP-RSPIKIQVWNSNL   74 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-----E-EEEeCccCCC-CCCcccceEEEEecCC-CCEEEEEEEECCC
Confidence            46899999999998765 67899999998642     2 6899999988 9999999999987654 4689999999987


Q ss_pred             CCCCceEEEEEEECCCCC
Q psy12820        137 FGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       137 ~~~~~~iG~~~i~l~~l~  154 (156)
                      .+ +++||.+.++++++.
T Consensus        75 ~~-d~~lG~~~~~l~~~~   91 (126)
T cd04046          75 LC-DEFLGQATLSADPND   91 (126)
T ss_pred             CC-CCceEEEEEecccCC
Confidence            75 799999999997643

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.72  E-value=1.1e-16  Score=111.73  Aligned_cols=89  Identities=25%  Similarity=0.450  Sum_probs=73.6

Q ss_pred             EEEEEEEeeeeecccCC-------------------------------CCCCCCEEEEEEecCCCCCCceEEeEEecCCC
Q psy12820         58 VKVLLRVLAARHLTRSG-------------------------------RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNG  106 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-------------------------------~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~  106 (156)
                      ..|.|+|++|++|+.++                               .+.+||||+|.+.+    .. ..||++++++ 
T Consensus         7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~----~~-~~rT~v~~~~-   80 (158)
T cd04015           7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG----AR-VARTRVIENS-   80 (158)
T ss_pred             eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC----eE-eeEEEEeCCC-
Confidence            47999999999998753                               34579999999842    22 4699999988 


Q ss_pred             CCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820        107 FNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       107 ~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      .||.|||+|.|.+..+ ...|.|.|||++..+ +++||++.+|++++.
T Consensus        81 ~nP~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~  126 (158)
T cd04015          81 ENPVWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLL  126 (158)
T ss_pred             CCCccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHcc
Confidence            9999999999988654 357999999999876 489999999998764

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.72  E-value=8.8e-17  Score=111.32  Aligned_cols=94  Identities=20%  Similarity=0.344  Sum_probs=76.6

Q ss_pred             eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCC-----------------------CCceEEeEEecCCCCCCee
Q psy12820         56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYD-----------------------TGLKLTTKTVSDNGFNPTW  111 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~-----------------------~~~~~kT~~~~~~~~nP~w  111 (156)
                      ....|+|+|++|++|...+ .+.+||||++.+......                       .....+|++++++ .||.|
T Consensus        26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~t-lnP~W  104 (153)
T cd08676          26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQT-LNPVW  104 (153)
T ss_pred             CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCC-CCCcc
Confidence            4578999999999998876 678999999988532110                       0114789998888 99999


Q ss_pred             CceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820        112 NESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       112 ~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ||+|.|.+.......|.|+|||++    +++||++.++++++.
T Consensus       105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~  143 (153)
T cd08676         105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP  143 (153)
T ss_pred             ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence            999999987655678999999997    789999999998775

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.72  E-value=8.5e-17  Score=108.29  Aligned_cols=83  Identities=24%  Similarity=0.394  Sum_probs=72.0

Q ss_pred             EeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC--CccEEEEEEEecCCCCCCc
Q psy12820         64 VLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP--EMALLRFVCQDEDMFGDSN  141 (156)
Q Consensus        64 v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~--~~~~l~~~V~d~~~~~~~~  141 (156)
                      |++|++|+. ..+.+||||++.+.+     . +.+|++++++ .||+|||+|.|.+..+  +...|.|+|||++..++++
T Consensus         2 vi~a~~L~~-~~g~~Dpyv~v~~~~-----~-~~kT~v~~~~-~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~   73 (127)
T cd08373           2 VVSLKNLPG-LKGKGDRIAKVTFRG-----V-KKKTRVLENE-LNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNR   73 (127)
T ss_pred             eEEeeCCcc-cCCCCCCEEEEEECC-----E-eeecceeCCC-cCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCc
Confidence            789999988 667899999999843     2 6799999988 9999999999998754  4568999999999988899


Q ss_pred             eEEEEEEECCCCC
Q psy12820        142 FIGQATYPVYTNR  154 (156)
Q Consensus       142 ~iG~~~i~l~~l~  154 (156)
                      +||++.++++++.
T Consensus        74 ~iG~~~~~l~~l~   86 (127)
T cd08373          74 LIGSATVSLQDLV   86 (127)
T ss_pred             eEEEEEEEhhHcc
Confidence            9999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.72  E-value=1.7e-16  Score=108.14  Aligned_cols=92  Identities=22%  Similarity=0.331  Sum_probs=74.0

Q ss_pred             EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCC--------CCceEEeEEecCCCCCCee-CceEEEEEeCCCccEEEE
Q psy12820         59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYD--------TGLKLTTKTVSDNGFNPTW-NESCEFTVHNPEMALLRF  129 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~--------~~~~~kT~~~~~~~~nP~w-~e~f~f~v~~~~~~~l~~  129 (156)
                      .++|++++|++|+....+.+||||++.+.+....        .. +++|++++++ +||+| ||+|.|.+..  ...|.+
T Consensus         2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~-~~kT~v~~~t-lnP~W~nE~f~f~v~~--~~~L~v   77 (137)
T cd08691           2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQ-ECRTSIVENT-INPVWHREQFVFVGLP--TDVLEI   77 (137)
T ss_pred             EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccc-eeeeeeEcCC-CCCceEceEEEEEcCC--CCEEEE
Confidence            3689999999998545789999999998643211        22 7899999988 99999 9999998853  358999


Q ss_pred             EEEecCCCCC---CceEEEEEEECCCCC
Q psy12820        130 VCQDEDMFGD---SNFIGQATYPVYTNR  154 (156)
Q Consensus       130 ~V~d~~~~~~---~~~iG~~~i~l~~l~  154 (156)
                      +|||++..++   +++||++.++++++.
T Consensus        78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~  105 (137)
T cd08691          78 EVKDKFAKSRPIIRRFLGKLSIPVQRLL  105 (137)
T ss_pred             EEEecCCCCCccCCceEEEEEEEHHHhc
Confidence            9999865443   689999999998874

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.70  E-value=3e-16  Score=108.69  Aligned_cols=93  Identities=17%  Similarity=0.229  Sum_probs=71.9

Q ss_pred             EEEEEeeeee--cccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC--------ccEEE
Q psy12820         60 VLLRVLAARH--LTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE--------MALLR  128 (156)
Q Consensus        60 L~v~v~~a~~--L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~--------~~~l~  128 (156)
                      ..++|..|.+  |+... .+.+||||++++.-...+.. +.||++++++ +||+|||+|.|.+....        ...|.
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~-k~KT~v~k~T-lnPvfNE~f~f~I~~~~~~~~R~l~~~~L~   81 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQ-SGKTSTIKDT-NSPEYNESFKLNINRKHRSFQRVFKRHGLK   81 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCc-eeecCcccCC-CCCcccceEEEEeccccchhhhhccCCcEE
Confidence            4556666666  55544 56789999999743323334 8999999999 99999999999986442        23699


Q ss_pred             EEEEecCCC-CCCceEEEEEEECCCCC
Q psy12820        129 FVCQDEDMF-GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       129 ~~V~d~~~~-~~~~~iG~~~i~l~~l~  154 (156)
                      |+|||++.+ ++|++||++.++|+.+.
T Consensus        82 ~~V~d~~~f~~~D~~iG~~~i~L~~l~  108 (155)
T cd08690          82 FEVYHKGGFLRSDKLLGTAQVKLEPLE  108 (155)
T ss_pred             EEEEeCCCcccCCCeeEEEEEEccccc
Confidence            999999876 57899999999998874

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.69  E-value=4.4e-16  Score=104.62  Aligned_cols=88  Identities=23%  Similarity=0.324  Sum_probs=73.4

Q ss_pred             EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820         59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG  138 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~  138 (156)
                      .|.|+|++|+.+.....+.+||||++.+.+    .. ..+|++++++ .+|.|||+|.|.+..  ...|.|+|||++..+
T Consensus         3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~----~~-~~kT~v~~~t-~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~   74 (125)
T cd04021           3 QLQITVESAKLKSNSKSFKPDPYVEVTVDG----QP-PKKTEVSKKT-SNPKWNEHFTVLVTP--QSTLEFKVWSHHTLK   74 (125)
T ss_pred             eEEEEEEeeECCCCCcCCCCCeEEEEEECC----cc-cEEeeeeCCC-CCCccccEEEEEeCC--CCEEEEEEEeCCCCC
Confidence            689999999854444467899999999742    22 6899998887 999999999998753  468999999999998


Q ss_pred             CCceEEEEEEECCCCC
Q psy12820        139 DSNFIGQATYPVYTNR  154 (156)
Q Consensus       139 ~~~~iG~~~i~l~~l~  154 (156)
                      .+++||++.++++++.
T Consensus        75 ~~~~iG~~~i~l~~l~   90 (125)
T cd04021          75 ADVLLGEASLDLSDIL   90 (125)
T ss_pred             CCcEEEEEEEEHHHhH
Confidence            8999999999987764

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.68  E-value=4e-16  Score=102.42  Aligned_cols=90  Identities=18%  Similarity=0.305  Sum_probs=70.8

Q ss_pred             EEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEe---CCC-ccEEEEEEEecCCC
Q psy12820         63 RVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVH---NPE-MALLRFVCQDEDMF  137 (156)
Q Consensus        63 ~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~---~~~-~~~l~~~V~d~~~~  137 (156)
                      -.++|++|+..+ .+.+||||++++.+........++|++++++ .||+|| +|.|.+.   ..+ ...|.|+|||++..
T Consensus         5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t-~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNT-LNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccC-CCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            356899998876 6789999999986532112236899999998 999999 6777643   222 35899999999999


Q ss_pred             CCCceEEEEEEECCCCC
Q psy12820        138 GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       138 ~~~~~iG~~~i~l~~l~  154 (156)
                      +++++||++.+++++|.
T Consensus        83 ~~d~~iG~~~~~l~~l~   99 (110)
T cd04047          83 GKHDLIGEFETTLDELL   99 (110)
T ss_pred             CCCcEEEEEEEEHHHHh
Confidence            99999999999998774

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.67  E-value=4.2e-16  Score=96.90  Aligned_cols=84  Identities=32%  Similarity=0.613  Sum_probs=73.6

Q ss_pred             EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820         60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG  138 (156)
Q Consensus        60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~  138 (156)
                      |+|+|++|++|+..+ .+..+|||++.+.+...   ...+|++++++ .+|.|+|+|.|.+..++...|.|+|||++..+
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~---~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~   76 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES---TKYKTKVKKNT-SNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFG   76 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC---EEEEECCBSSB-SSEEEEEEEEEEESHGCGTEEEEEEEEETSSS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeee---eeeeeeeeecc-ccceeeeeeeeeeecccccceEEEEEECCCCC
Confidence            789999999999855 66899999999876432   36899998888 99999999999988888888999999999998


Q ss_pred             CCceEEEEE
Q psy12820        139 DSNFIGQAT  147 (156)
Q Consensus       139 ~~~~iG~~~  147 (156)
                      ++++||++.
T Consensus        77 ~~~~iG~~~   85 (85)
T PF00168_consen   77 KDELIGEVK   85 (85)
T ss_dssp             SEEEEEEEE
T ss_pred             CCCEEEEEC
Confidence            899999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1028|consensus

Probab=99.67  E-value=3.9e-16  Score=123.85  Aligned_cols=95  Identities=28%  Similarity=0.438  Sum_probs=82.4

Q ss_pred             eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEE
Q psy12820         56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQ  132 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~  132 (156)
                      ....|+|+|+.|.+|+..+ .+.+||||+++++.   |+..+.+|++.+++ +||+|||+|.|.|...++  ..|.|+||
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llP---dk~~k~kT~v~r~t-lnP~fnEtf~f~v~~~~l~~~~L~l~V~  240 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLP---DKKGKFKTRVHRKT-LNPVFNETFRFEVPYEELSNRVLHLSVY  240 (421)
T ss_pred             cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcC---CCCCcceeeeeecC-cCCccccceEeecCHHHhccCEEEEEEE
Confidence            3567999999999999887 56799999999984   44458999999998 999999999999775544  48999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      |.|.++++++||++.++|..+.
T Consensus       241 ~~drfsr~~~iGev~~~l~~~~  262 (421)
T KOG1028|consen  241 DFDRFSRHDFIGEVILPLGEVD  262 (421)
T ss_pred             ecCCcccccEEEEEEecCcccc
Confidence            9999999999999999987654

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.56  E-value=4.6e-14  Score=95.30  Aligned_cols=93  Identities=16%  Similarity=0.151  Sum_probs=75.8

Q ss_pred             EEEEEeeeeecccCC---CC--CCCCEEEEEEecCCCCCCceEEeEEecCCCCC--CeeCceEEEEEeCC----------
Q psy12820         60 VLLRVLAARHLTRSG---RC--TTSPFVEVEVLGADYDTGLKLTTKTVSDNGFN--PTWNESCEFTVHNP----------  122 (156)
Q Consensus        60 L~v~v~~a~~L~~~~---~~--~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~n--P~w~e~f~f~v~~~----------  122 (156)
                      |+|.|..|++++...   .+  .+||||++.+.+.   ...+++|.++.++ +|  |.||+.|.|.+..+          
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~---~~~kqkTDVHyrs-lnG~~~FNwRfvF~~~~~~~~~~~~~~~   77 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL---EEDKQKTDVHYRS-LDGEGNFNWRFVFPFDYLPAEKKIVVIK   77 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccC---cccccccceEEec-CCCCcEEeEEEEEeeecCCccceeEEEe
Confidence            789999999966432   34  5999999999764   2237899999988 88  99999999987651          


Q ss_pred             -----------C--ccEEEEEEEecCCCCCCceEEEEEEECCCCCCC
Q psy12820        123 -----------E--MALLRFVCQDEDMFGDSNFIGQATYPVYTNRFP  156 (156)
Q Consensus       123 -----------~--~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~  156 (156)
                                 +  ...|.++|||.|.++.+++||++.+++..+.+|
T Consensus        78 ~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~  124 (133)
T cd08374          78 KEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP  124 (133)
T ss_pred             eccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence                       1  247899999999999999999999999987654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.54  E-value=3e-14  Score=93.78  Aligned_cols=72  Identities=24%  Similarity=0.355  Sum_probs=61.4

Q ss_pred             CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCC
Q psy12820         75 RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus        75 ~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l  153 (156)
                      .|.+||||+|.+.+    .. ..+|++++++ .||+|||+|.|.+..+....|.|.|+|++.. ++++||.+.++|+++
T Consensus        10 ~G~~dPYv~v~v~~----~~-~~kT~v~~~t-~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l   81 (111)
T cd04052          10 TGLLSPYAELYLNG----KL-VYTTRVKKKT-NNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDL   81 (111)
T ss_pred             CCCCCceEEEEECC----EE-EEEEeeeccC-CCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHH
Confidence            67799999999842    22 5788888887 9999999999998876667899999999988 789999999998765

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.53  E-value=2.1e-13  Score=86.60  Aligned_cols=91  Identities=36%  Similarity=0.645  Sum_probs=76.0

Q ss_pred             EEEEEeeeeecccCCC-CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820         60 VLLRVLAARHLTRSGR-CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG  138 (156)
Q Consensus        60 L~v~v~~a~~L~~~~~-~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~  138 (156)
                      +.|.|++|++|..... ...+|||++++.+.+   ....+|+++.++ .+|.|+|+|.|.+..+....|.|+||+.+..+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~---~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~   77 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP---KEKKKTKVVKNT-LNPVWNETFEFEVPPPELAELEIEVYDKDRFG   77 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc---cceEeeeEecCC-CCCcccceEEEEecCcccCEEEEEEEecCCcc
Confidence            6899999999987653 578999999986432   226889998887 79999999999988765678999999998877


Q ss_pred             CCceEEEEEEECCCCC
Q psy12820        139 DSNFIGQATYPVYTNR  154 (156)
Q Consensus       139 ~~~~iG~~~i~l~~l~  154 (156)
                      .+.++|.+.+++.++.
T Consensus        78 ~~~~~G~~~~~l~~~~   93 (101)
T smart00239       78 RDDFIGQVTIPLSDLL   93 (101)
T ss_pred             CCceeEEEEEEHHHcc
Confidence            7889999999987664

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PF00387 PI-PLC-Y: Phosphatidylinositol-specific phospholipase C, Y domain This entry is for the whole phospholipase C protein; InterPro: IPR001711 Phosphatidylinositol-specific phospholipase C (3

Probab=99.53  E-value=1.5e-15  Score=100.28  Aligned_cols=30  Identities=43%  Similarity=0.984  Sum_probs=24.8

Q ss_pred             ccCChhhhccccccccCCceeEEecCCccc
Q psy12820         11 SVINKAMQVNHAKFRMNGGCGYLLRPAFMF   40 (156)
Q Consensus        11 ~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~   40 (156)
                      ||.|.+|+||+|||++||+|||||||++||
T Consensus        89 Qt~d~~m~ln~g~F~~NG~cGYVLKP~~lR  118 (118)
T PF00387_consen   89 QTPDEPMQLNQGMFRQNGGCGYVLKPEYLR  118 (118)
T ss_dssp             TS-SHHHHHHHHHTTTGGG-SEEE--GGGT
T ss_pred             cCCChhHHHHHhhhccCCCCCeEeCchhhC
Confidence            399999999999999999999999999997

1.4.11 from EC), an eukaryotic intracellular enzyme, plays an important role in signal transduction processes [] (see IPR001192 from INTERPRO). It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as 'X-box' (see IPR000909 from INTERPRO) and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. At the C-terminal of the Y-box, there is a C2 domain (see IPR000008 from INTERPRO) possibly involved in Ca-dependent membrane attachment.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0006629 lipid metabolic process, 0007165 signal transduction, 0035556 intracellular signal transduction; PDB: 3OHM_B 2FJU_B 2ZKM_X 3QR1_D 3QR0_A 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.53  E-value=1.4e-13  Score=91.07  Aligned_cols=82  Identities=28%  Similarity=0.438  Sum_probs=63.8

Q ss_pred             EEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEecCCC
Q psy12820         60 VLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMF  137 (156)
Q Consensus        60 L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d~~~~  137 (156)
                      |+|+|++|++|+..  +.+||||++.+.+    .. ..+|+++++  .||.|||+|.|.+...+..  .|.+.+||.+..
T Consensus         2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~----~~-~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~   72 (117)
T cd08383           2 LRLRILEAKNLPSK--GTRDPYCTVSLDQ----VE-VARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSK   72 (117)
T ss_pred             eEEEEEEecCCCcC--CCCCceEEEEECC----EE-eEecceEEC--CCCcccceEEEecCCccccEEEEEEEEEecccC
Confidence            78999999999876  7899999999842    22 568888766  7999999999998765443  677788888766


Q ss_pred             CCCceEEEEEEEC
Q psy12820        138 GDSNFIGQATYPV  150 (156)
Q Consensus       138 ~~~~~iG~~~i~l  150 (156)
                      +++.++|.+.+..
T Consensus        73 ~~~~~~g~v~l~~   85 (117)
T cd08383          73 DRDIVIGKVALSK   85 (117)
T ss_pred             CCeeEEEEEEecC
Confidence            6666777765543

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>KOG1028|consensus

Probab=99.52  E-value=5.7e-14  Score=111.57  Aligned_cols=136  Identities=23%  Similarity=0.292  Sum_probs=99.8

Q ss_pred             Chhhhccc-cccccCCceeEEecCCcccCCCC--------CCCC----CC--CC-----CceeeEEEEEEEeeeeecccC
Q psy12820         14 NKAMQVNH-AKFRMNGGCGYLLRPAFMFSESY--------DPYD----PT--SL-----VGVTRVKVLLRVLAARHLTRS   73 (156)
Q Consensus        14 d~~m~~n~-~~F~~ng~~GyvlKP~~l~~~~~--------~p~~----~~--~~-----~~~~~~~L~v~v~~a~~L~~~   73 (156)
                      -+.+.+.+ ++|..++--|.|.=|....+...        .|..    ..  ++     .-....+|+|.|+.|++|+..
T Consensus       234 ~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~  313 (421)
T KOG1028|consen  234 VLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSM  313 (421)
T ss_pred             EEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCcc
Confidence            34445554 78999999999998833222211        0110    00  00     012347899999999999987


Q ss_pred             C-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEecCCCCCCceEEEEEEEC
Q psy12820         74 G-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYPV  150 (156)
Q Consensus        74 ~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d~~~~~~~~~iG~~~i~l  150 (156)
                      + .+..||||++.+.... ....++||.+.+++ .||+|||+|.|.|....+.  .+.++|||+|.++.+++||++.+..
T Consensus       314 ~~~~~~d~~Vk~~l~~~~-~~~~kkkT~~~~~~-~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~  391 (421)
T KOG1028|consen  314 DVGGLSDPYVKVTLLDGD-KRLSKKKTSVKKKT-LNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGS  391 (421)
T ss_pred             cCCCCCCccEEEEEecCC-ceeeeeeeecccCC-CCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecC
Confidence            6 6788999999998654 33457889988888 9999999999988755444  7889999999999999999988765


Q ss_pred             C
Q psy12820        151 Y  151 (156)
Q Consensus       151 ~  151 (156)
                      .
T Consensus       392 ~  392 (421)
T KOG1028|consen  392 D  392 (421)
T ss_pred             C
Confidence            4

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.51  E-value=2.2e-13  Score=93.46  Aligned_cols=89  Identities=20%  Similarity=0.231  Sum_probs=70.1

Q ss_pred             eeeEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec
Q psy12820         55 VTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE  134 (156)
Q Consensus        55 ~~~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~  134 (156)
                      .....|.|.|++|++|+..+    +|||++.+-     .....||+++.++ .||.|+|.|+|....+ ...+.|.|+..
T Consensus         8 R~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld-----~~~vaRT~v~~~~-~nP~W~E~F~f~~~~~-~~~l~v~v~k~   76 (146)
T cd04013           8 RTENSLKLWIIEAKGLPPKK----RYYCELCLD-----KTLYARTTSKLKT-DTLFWGEHFEFSNLPP-VSVITVNLYRE   76 (146)
T ss_pred             EEEEEEEEEEEEccCCCCcC----CceEEEEEC-----CEEEEEEEEEcCC-CCCcceeeEEecCCCc-ccEEEEEEEEc
Confidence            34678999999999998754    799999984     3325699999988 8999999999975543 46789999764


Q ss_pred             C-CCC---CCceEEEEEEECCCCC
Q psy12820        135 D-MFG---DSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~-~~~---~~~~iG~~~i~l~~l~  154 (156)
                      + ..+   ++++||.+.||+.++.
T Consensus        77 ~~~~~~~~~~~~IG~V~Ip~~~l~  100 (146)
T cd04013          77 SDKKKKKDKSQLIGTVNIPVTDVS  100 (146)
T ss_pred             cCccccccCCcEEEEEEEEHHHhc
Confidence            4 222   5689999999988764

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>PLN03008 Phospholipase D delta

Probab=99.50  E-value=1.6e-13  Score=114.66  Aligned_cols=72  Identities=31%  Similarity=0.562  Sum_probs=61.2

Q ss_pred             CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820         76 CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus        76 ~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      +.+||||+|.+.    + .+..||++++++ .||+|||+|.|.+..+. ..|.|+|+|+|.++. ++||++.+|+.+|..
T Consensus        75 ~tSDPYV~I~Lg----~-~rv~RTrVi~n~-~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~ga-D~IG~a~IPL~~L~~  146 (868)
T PLN03008         75 ITSDPYVTVVVP----Q-ATLARTRVLKNS-QEPLWDEKFNISIAHPF-AYLEFQVKDDDVFGA-QIIGTAKIPVRDIAS  146 (868)
T ss_pred             CCCCceEEEEEC----C-cceeeEEeCCCC-CCCCcceeEEEEecCCC-ceEEEEEEcCCccCC-ceeEEEEEEHHHcCC
Confidence            467999999983    2 226799999888 99999999999998764 589999999999985 899999999988753

>KOG1011|consensus

Probab=99.48  E-value=4.2e-14  Score=114.51  Aligned_cols=91  Identities=31%  Similarity=0.461  Sum_probs=76.8

Q ss_pred             eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec
Q psy12820         56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE  134 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~  134 (156)
                      -..+++++|++|++|-..+ .|++||||.+.+.     +. ++||+++..+ +||+|||.|+|.+++.. ..++++|||+
T Consensus       293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~-----kt-krrtrti~~~-lnpvw~ekfhfechnst-drikvrvwde  364 (1283)
T KOG1011|consen  293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG-----KT-KRRTRTIHQE-LNPVWNEKFHFECHNST-DRIKVRVWDE  364 (1283)
T ss_pred             cceeeEEeeeecccceecccCCCCCCcEEEeec-----cc-chhhHhhhhc-cchhhhhheeeeecCCC-ceeEEEEecC
Confidence            3568999999999998776 7899999999863     34 8899999999 99999999999999753 5789999998


Q ss_pred             CCC-----------CCCceEEEEEEECCCCC
Q psy12820        135 DMF-----------GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~-----------~~~~~iG~~~i~l~~l~  154 (156)
                      |..           .+|||+|+..|.+..|.
T Consensus       365 d~dlksklrqkl~resddflgqtvievrtls  395 (1283)
T KOG1011|consen  365 DNDLKSKLRQKLTRESDDFLGQTVIEVRTLS  395 (1283)
T ss_pred             cccHHHHHHHHhhhcccccccceeEEEEecc
Confidence            753           36899999999876653

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.47  E-value=1.1e-13  Score=124.47  Aligned_cols=90  Identities=20%  Similarity=0.383  Sum_probs=76.6

Q ss_pred             eeEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc-EEEEEEEec
Q psy12820         56 TRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA-LLRFVCQDE  134 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~-~l~~~V~d~  134 (156)
                      -++.|+|+|++|++|. .+.+.+||||++.+..     +.++||+++++| .||+|||.|+|.+..|... .+.++|||+
T Consensus      1978 ~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~-----~~~~kTkvvk~~-~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200       1978 LPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGN-----GPPRQTKVVSHS-SSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred             CCcceEEEEeeccccc-cccCCCCCeEEEEECC-----CCcccccccCCC-CCCCcccceeeeecCCCCCCceEEEEEec
Confidence            3678999999999998 5568899999999842     226799999999 9999999999998877653 599999999


Q ss_pred             CCCCCCceEEEEEEECCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l  153 (156)
                      |.+++ +.+|.+.+++.++
T Consensus      2051 d~f~k-d~~G~~~i~l~~v 2068 (2102)
T PLN03200       2051 NTFGK-SSLGKVTIQIDRV 2068 (2102)
T ss_pred             CccCC-CCCceEEEEHHHH
Confidence            99966 5899999998764

>smart00149 PLCYc Phospholipase C, catalytic domain (part); domain Y

Probab=99.46  E-value=1.6e-14  Score=94.78  Aligned_cols=29  Identities=52%  Similarity=1.099  Sum_probs=27.4

Q ss_pred             ccCChhhhccccccccCCceeEEecCCcc
Q psy12820         11 SVINKAMQVNHAKFRMNGGCGYLLRPAFM   39 (156)
Q Consensus        11 ~t~d~~m~~n~~~F~~ng~~GyvlKP~~l   39 (156)
                      ||.|++||||+|||+.||+|||||||++|
T Consensus        87 Qt~d~~m~lN~g~F~~NG~cGYVLKP~~l  115 (115)
T smart00149       87 QTPDKPMQLNQGMFRANGGCGYVLKPDFL  115 (115)
T ss_pred             CCCChHHHHHhhHhhcCCCCCeEeCCCCC
Confidence            38999999999999999999999999875

Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.

>cd00030 C2 C2 domain

Probab=99.42  E-value=2.7e-12  Score=81.09  Aligned_cols=89  Identities=33%  Similarity=0.591  Sum_probs=74.2

Q ss_pred             EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820         60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG  138 (156)
Q Consensus        60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~  138 (156)
                      |.|.|++|++|+... ....+|||.+.+.+    .. ..+|++..++ .+|.|+|.|.|.+.......+.|.||+.+..+
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~-~~~T~~~~~~-~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~   74 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQ-KFKTKVVKNT-LNPVWNETFEFPVLDPESDTLTVEVWDKDRFS   74 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----Cc-eEecceeCCC-CCCcccceEEEEccCCCCCEEEEEEEecCCCC
Confidence            468999999997743 56789999999853    23 7889988887 89999999999988644568999999998887


Q ss_pred             CCceEEEEEEECCCCC
Q psy12820        139 DSNFIGQATYPVYTNR  154 (156)
Q Consensus       139 ~~~~iG~~~i~l~~l~  154 (156)
                      .+.+||++.+++.++.
T Consensus        75 ~~~~ig~~~~~l~~l~   90 (102)
T cd00030          75 KDDFLGEVEIPLSELL   90 (102)
T ss_pred             CCceeEEEEEeHHHhh
Confidence            7889999999987764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.33  E-value=2.7e-12  Score=109.37  Aligned_cols=93  Identities=22%  Similarity=0.274  Sum_probs=83.1

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED  135 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~  135 (156)
                      ...|+|.+.+|++|+..+ ++.+||||++.+-+    +. .++|++++++ +||+|||.+..+|.+.....+.+.|+|||
T Consensus      1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~----k~-vyktkv~Kkt-lNPvwNEe~~i~v~~r~~D~~~i~v~Dwd 1112 (1227)
T COG5038        1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE----KS-VYKTKVVKKT-LNPVWNEEFTIEVLNRVKDVLTINVNDWD 1112 (1227)
T ss_pred             cCcEEEEEeccCCCcccccCCCCCceEEEEecc----ee-cccccchhcc-CCCCccccceEeeeccccceEEEEEeecc
Confidence            457999999999999876 77799999998843    33 7899999999 99999999999999888889999999999


Q ss_pred             CCCCCceEEEEEEECCCCCC
Q psy12820        136 MFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       136 ~~~~~~~iG~~~i~l~~l~~  155 (156)
                      ...+++.||.+.++|..|.+
T Consensus      1113 ~~~knd~lg~~~idL~~l~~ 1132 (1227)
T COG5038        1113 SGEKNDLLGTAEIDLSKLEP 1132 (1227)
T ss_pred             cCCCccccccccccHhhcCc
Confidence            99999999999999988764

>KOG1328|consensus

Probab=99.20  E-value=4.5e-12  Score=103.76  Aligned_cols=96  Identities=27%  Similarity=0.401  Sum_probs=78.2

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCC-CCCceEEeEEecCCCCCCeeCceEEEEEeCC----CccEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADY-DTGLKLTTKTVSDNGFNPTWNESCEFTVHNP----EMALLRFV  130 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~-~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~----~~~~l~~~  130 (156)
                      ..+|.|.|+-|+++-+.+ +|.+||||.|++...-. .....++|++++++ +||+|+|+|.|.|...    +.+++.|+
T Consensus       946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rt-LnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRT-LNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred             ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhcc-ccchhhhheeeecCccccccccceEEEE
Confidence            457889999999887665 89999999999864211 11237799999998 9999999999998742    23599999


Q ss_pred             EEecCCCCCCceEEEEEEECCCC
Q psy12820        131 CQDEDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       131 V~d~~~~~~~~~iG~~~i~l~~l  153 (156)
                      |+|+|-.+.+||-|++.+.|+++
T Consensus      1025 VMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred             eeccceecccccchHHHHhhCCC
Confidence            99999999999999998887765

>PLN02270 phospholipase D alpha

Probab=99.04  E-value=1.3e-09  Score=91.33  Aligned_cols=90  Identities=18%  Similarity=0.311  Sum_probs=74.0

Q ss_pred             EEEEEEEeeeeecccC-------------------CCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE
Q psy12820         58 VKVLLRVLAARHLTRS-------------------GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT  118 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~-------------------~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~  118 (156)
                      ..|.++|++|++|+..                   ..+.+||||.|.+.     ..+.-||+++.+...||.|+|+|.+.
T Consensus         8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~-----~a~v~rtr~~~~~~~~p~w~e~f~i~   82 (808)
T PLN02270          8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE-----KARVGRTRKIENEPKNPRWYESFHIY   82 (808)
T ss_pred             cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC-----CcEEEEEeecCCCCCCCccccceEEe
Confidence            4689999999998742                   13467999999984     33378999998864699999999999


Q ss_pred             EeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820        119 VHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       119 v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      +..+- +.+.|+|+|.+.++. .+||.+.+|+.+|.
T Consensus        83 ~ah~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~  116 (808)
T PLN02270         83 CAHMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEIL  116 (808)
T ss_pred             eccCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhc
Confidence            88764 689999999999987 59999999987763

>KOG1011|consensus

Probab=99.01  E-value=1.2e-09  Score=89.15  Aligned_cols=101  Identities=32%  Similarity=0.459  Sum_probs=85.5

Q ss_pred             CceeeEEEEEEEeeeeecccCCCCCCCCEEEEEEecCC-CCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEE
Q psy12820         53 VGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGAD-YDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLR  128 (156)
Q Consensus        53 ~~~~~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~-~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~  128 (156)
                      +|....+++|+|+.|.+|.....|...|||+|.+.|.. +|+.+++.|++..+| ..|.+||+|+|.+.+   |+.-.|.
T Consensus      1120 pgtgehkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnn-WaPKyNEtF~f~Lg~e~~Pe~YEL~ 1198 (1283)
T KOG1011|consen 1120 PGTGEHKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNN-WAPKYNETFHFFLGNEGGPEHYELQ 1198 (1283)
T ss_pred             CCCCcceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCC-cCcccCceeEEEeccCCCCceEEEE
Confidence            45566789999999999998888889999999998864 355568888888888 999999999999875   4444899


Q ss_pred             EEEEecCCCCCCceEEEEEEECCCCC
Q psy12820        129 FVCQDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       129 ~~V~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      |.|.|+.....|..+|.+.++|.++.
T Consensus      1199 ~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1199 FCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred             EeehhheeecccceeeeeeeehhhHh
Confidence            99999988888889999999998764

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.01  E-value=1.6e-09  Score=92.79  Aligned_cols=95  Identities=20%  Similarity=0.286  Sum_probs=78.2

Q ss_pred             ceeeEEEEEEEeeeeecccCC---CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEE
Q psy12820         54 GVTRVKVLLRVLAARHLTRSG---RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFV  130 (156)
Q Consensus        54 ~~~~~~L~v~v~~a~~L~~~~---~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~  130 (156)
                      +..-+.|.|+|.+|.+|...+   .+..|||+++...    +.. .-||++.+++ +||+|||+|-..+..- ...|.++
T Consensus       432 ~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~----~r~-~gkT~v~~nt-~nPvwNEt~Yi~lns~-~d~L~Ls  504 (1227)
T COG5038         432 GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFS----DRV-IGKTRVKKNT-LNPVWNETFYILLNSF-TDPLNLS  504 (1227)
T ss_pred             CCeeEEEEEEEeeccCcccccccccCCCCceEEEEec----ccc-CCccceeecc-CCccccceEEEEeccc-CCceeEE
Confidence            345578999999999998876   7889999999964    333 5589999988 9999999987766532 3478999


Q ss_pred             EEecCCCCCCceEEEEEEECCCCCC
Q psy12820        131 CQDEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       131 V~d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      +||.+...+|+++|.+.++|..|.+
T Consensus       505 lyD~n~~~sd~vvG~~~l~L~~L~~  529 (1227)
T COG5038         505 LYDFNSFKSDKVVGSTQLDLALLHQ  529 (1227)
T ss_pred             EEeccccCCcceeeeEEechHHhhh
Confidence            9998888899999999999887654

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.98  E-value=2.2e-09  Score=69.10  Aligned_cols=82  Identities=18%  Similarity=0.224  Sum_probs=60.9

Q ss_pred             EEEEEeeeeecccCC----CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820         60 VLLRVLAARHLTRSG----RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED  135 (156)
Q Consensus        60 L~v~v~~a~~L~~~~----~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~  135 (156)
                      |+|+|.+++++....    .+.++|||.+.+.    +.. +.||+.   + .||.|||+|.|++.  ....+.+.|||..
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve----d~~-kaRTr~---s-rnd~WnE~F~i~Vd--k~nEiel~VyDk~   69 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVE----DVE-RARTKP---S-RNDRWNEDFEIPVE--KNNEEEVIVYDKG   69 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEEC----CEE-EEeccC---C-CCCcccceEEEEec--CCcEEEEEEEeCC
Confidence            578999999997654    5678999999974    344 677776   2 68999999999995  3568999999985


Q ss_pred             CCCCCceEEEEEEECCCC
Q psy12820        136 MFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       136 ~~~~~~~iG~~~i~l~~l  153 (156)
                      .. ..--||..-+++++|
T Consensus        70 ~~-~~~Pi~llW~~~sdi   86 (109)
T cd08689          70 GD-QPVPVGLLWLRLSDI   86 (109)
T ss_pred             CC-eecceeeehhhHHHH
Confidence            32 223577776666654

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG2059|consensus

Probab=98.93  E-value=1.4e-09  Score=88.97  Aligned_cols=88  Identities=18%  Similarity=0.263  Sum_probs=74.3

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM  136 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~  136 (156)
                      ..|.|+|.+|++|+..+ .+..|||+.|.+-    +.. ..||.++.++ +.|.|.|.|.|.+.. ....|.|=|||.| 
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD----~E~-v~RT~tv~ks-L~PF~gEe~~~~iP~-~F~~l~fYv~D~d-   76 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD----QEE-VCRTATVEKS-LCPFFGEEFYFEIPR-TFRYLSFYVWDRD-   76 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeec----chh-hhhhhhhhhh-cCCccccceEEecCc-ceeeEEEEEeccc-
Confidence            46899999999999876 7789999999872    233 7899999999 999999999998874 3467899999999 


Q ss_pred             CCCCceEEEEEEECCCC
Q psy12820        137 FGDSNFIGQATYPVYTN  153 (156)
Q Consensus       137 ~~~~~~iG~~~i~l~~l  153 (156)
                      +++|+.||.+.|.-.+|
T Consensus        77 ~~~D~~IGKvai~re~l   93 (800)
T KOG2059|consen   77 LKRDDIIGKVAIKREDL   93 (800)
T ss_pred             cccccccceeeeeHHHH
Confidence            89999999998864443

>KOG1031|consensus

Probab=98.77  E-value=9.9e-09  Score=83.08  Aligned_cols=90  Identities=24%  Similarity=0.416  Sum_probs=76.3

Q ss_pred             eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCce-EEEEEeCCCcc--EEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES-CEFTVHNPEMA--LLRFVC  131 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~-f~f~v~~~~~~--~l~~~V  131 (156)
                      +.+|.|+|..|++||-++  .+..|.||++.+..     . .+||.+..++ +||.||.. |.|.+...++.  -|.+++
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n-----~-t~ktdvf~ks-lnp~wnsdwfkfevddadlqdeplqi~l   74 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN-----T-TFKTDVFLKS-LNPQWNSDWFKFEVDDADLQDEPLQIRL   74 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecc-----c-ceehhhhhhh-cCCcccccceEEecChhhhccCCeeEEE
Confidence            457899999999999876  55789999999853     2 7889998888 99999965 89999876664  789999


Q ss_pred             EecCCCCCCceEEEEEEECCCC
Q psy12820        132 QDEDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       132 ~d~~~~~~~~~iG~~~i~l~~l  153 (156)
                      .|+|..+.+|-||.+.+.++-|
T Consensus        75 ld~dtysandaigkv~i~idpl   96 (1169)
T KOG1031|consen   75 LDHDTYSANDAIGKVNIDIDPL   96 (1169)
T ss_pred             ecccccccccccceeeeccChH
Confidence            9999999999999999988654

>KOG0905|consensus

Probab=98.63  E-value=2.5e-08  Score=85.77  Aligned_cols=96  Identities=21%  Similarity=0.269  Sum_probs=78.1

Q ss_pred             eeEEEEEEEeeeeecccC-CCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCCc--cEEEEEE
Q psy12820         56 TRVKVLLRVLAARHLTRS-GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPEM--ALLRFVC  131 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~-~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~~--~~l~~~V  131 (156)
                      ...+|+|-|.-+++|+-. ++..+||||+.++...+.... |+||++++++ .||.|||.+.+. +....+  ..|.++|
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~s-KRKTKvvrkt-~~PTfnE~LvY~g~p~~~l~qReLQ~sV 1599 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTS-KRKTKVVRKT-RNPTFNEMLVYDGFPKEILQQRELQVSV 1599 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhh-hhhhcccccc-CCCchhhheeecCCchhhhhhheeeeee
Confidence            356788888889998543 466789999999987765444 8999999999 999999998887 332222  4789999


Q ss_pred             EecCCCCCCceEEEEEEECCCC
Q psy12820        132 QDEDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       132 ~d~~~~~~~~~iG~~~i~l~~l  153 (156)
                      |..+....+.++|.+.+||.++
T Consensus      1600 ls~~~~~en~~lg~v~i~L~~~ 1621 (1639)
T KOG0905|consen 1600 LSNGGLLENVFLGGVNIPLLKV 1621 (1639)
T ss_pred             ecccceeeeeeeeeeecchhhc
Confidence            9999888889999999999765

>KOG1013|consensus

Probab=98.56  E-value=9.5e-08  Score=72.47  Aligned_cols=90  Identities=18%  Similarity=0.319  Sum_probs=72.5

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d  133 (156)
                      ...+.|+++.+.+|...+ ++.+||||...+.. +.+..-++||.+.+++ .+|.|++.|.|.+...+++  .+.+.|||
T Consensus       232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~p-dv~~~fkkKt~~~K~t-~~p~fd~~~~~~i~pgdLa~~kv~lsvgd  309 (362)
T KOG1013|consen  232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSP-DVGKKFKKKTQQKKKT-LNPEFDEEFFYDIGPGDLAYKKVALSVGD  309 (362)
T ss_pred             CCceEEEEEEeeeeeccccCCCCCccceeecCC-CcchhhcccCcchhcc-CCccccccccccCCccchhcceEEEeecc
Confidence            346889999988887765 78899999998763 2333447889988888 9999999999999887776  78899999


Q ss_pred             cCCCCCCceEEEEEE
Q psy12820        134 EDMFGDSNFIGQATY  148 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i  148 (156)
                      ++..+..+++|-...
T Consensus       310 ~~~G~s~d~~GG~~~  324 (362)
T KOG1013|consen  310 YDIGKSNDSIGGSML  324 (362)
T ss_pred             cCCCcCccCCCcccc
Confidence            998878888886443

>KOG1326|consensus

Probab=98.53  E-value=5.6e-08  Score=82.39  Aligned_cols=91  Identities=19%  Similarity=0.202  Sum_probs=76.1

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED  135 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~  135 (156)
                      ...++|.|++|.+|.+.+ ++.+||||.+.+.+    +...-++..+.++ +||+|++.|++.+..|....+.+.|||+|
T Consensus       612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk----~~~~d~~~yip~t-lnPVfgkmfel~~~lp~ek~l~v~vyd~D  686 (1105)
T KOG1326|consen  612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGK----KRTLDRAHYIPNT-LNPVFGKMFELECLLPFEKDLIVEVYDHD  686 (1105)
T ss_pred             eeeEEEEEEEeeeccccCCCCCcCceeeeeecc----chhhhhhhcCcCC-CCcHHHHHHHhhcccchhhcceeEEEEee
Confidence            445778899999998876 88999999998742    2113466778888 99999999999988887789999999999


Q ss_pred             CCCCCceEEEEEEECCC
Q psy12820        136 MFGDSNFIGQATYPVYT  152 (156)
Q Consensus       136 ~~~~~~~iG~~~i~l~~  152 (156)
                      ..+.++.||+..+.+..
T Consensus       687 ~~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  687 LEAQDEKIGETTIDLEN  703 (1105)
T ss_pred             cccccchhhceehhhhh
Confidence            99999999999998753

>KOG2059|consensus

Probab=98.50  E-value=9.6e-08  Score=78.55  Aligned_cols=86  Identities=22%  Similarity=0.274  Sum_probs=65.0

Q ss_pred             eeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC---------------CccEEEEE
Q psy12820         66 AARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP---------------EMALLRFV  130 (156)
Q Consensus        66 ~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~---------------~~~~l~~~  130 (156)
                      +++++-+..++.+|||+++...|..  .....+|++.+++ .+|.|+|.|.|.+..+               +...|++.
T Consensus       139 ~~r~~~P~~~~~~dp~~~v~~~g~~--~~~~~~T~~~kkt-~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~  215 (800)
T KOG2059|consen  139 KTRQGLPIINGQCDPFARVTLCGPS--KLKEKKTKVKKKT-TNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVD  215 (800)
T ss_pred             hhcccCceeCCCCCcceEEeecccc--hhhccccceeeec-cCcchhhheeeeeccccccccchhcCcccCCceeeEEEe
Confidence            3444333346679999999876532  1124689998888 8999999999998765               44578899


Q ss_pred             EEe-cCCCCCCceEEEEEEECCCCC
Q psy12820        131 CQD-EDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       131 V~d-~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      +|+ .+....++|+|+..+|+..++
T Consensus       216 lW~~~~~~~~~~FlGevrv~v~~~~  240 (800)
T KOG2059|consen  216 LWNDLNLVINDVFLGEVRVPVDVLR  240 (800)
T ss_pred             eccchhhhhhhhhceeEEeehhhhh
Confidence            998 556666899999999998776

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.30  E-value=1.1e-06  Score=54.72  Aligned_cols=87  Identities=15%  Similarity=0.245  Sum_probs=60.4

Q ss_pred             EEEeeeeecccCCCCCCCC--EEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEecCCC
Q psy12820         62 LRVLAARHLTRSGRCTTSP--FVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMF  137 (156)
Q Consensus        62 v~v~~a~~L~~~~~~~~dp--yv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d~~~~  137 (156)
                      |+|+.+.+|.-.....-+|  |++=-+. . .... ..||+..+.. .||+|.|+|.|++..-++.  .|.|+|+.  ..
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~t-l-~kpv-~~KsS~rrgs-~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~   76 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILT-L-PKPV-HFKSSAKEGS-NDIEFMETFVFAIKLQNLQTVRLVFKIQT--QT   76 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEe-c-CCCc-cccchhhcCC-CChhHHHHHHHHHHHhhccceEEEEEeec--cC
Confidence            6788888887654322344  5542222 1 1122 5688877777 9999999999998765554  67788888  34


Q ss_pred             CCCceEEEEEEECCCCC
Q psy12820        138 GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       138 ~~~~~iG~~~i~l~~l~  154 (156)
                      .+.+.||++.+.++++-
T Consensus        77 ~RKe~iG~~sL~l~s~g   93 (103)
T cd08684          77 PRKRTIGECSLSLRTLS   93 (103)
T ss_pred             CccceeeEEEeecccCC
Confidence            56689999999998764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1328|consensus

Probab=98.29  E-value=1e-07  Score=78.77  Aligned_cols=98  Identities=20%  Similarity=0.328  Sum_probs=71.6

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCC----------------------CC--C-ceEEeEEecCCCCCCe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADY----------------------DT--G-LKLTTKTVSDNGFNPT  110 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~----------------------~~--~-~~~kT~~~~~~~~nP~  110 (156)
                      +.-+.|.+..|.+|...+ +|.+|||....+.....                      +.  . -.+-|++.+++ +||.
T Consensus       113 ~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T-LnPk  191 (1103)
T KOG1328|consen  113 SVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT-LNPK  191 (1103)
T ss_pred             cHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc-CCcc
Confidence            345778888888887765 78899999876643210                      00  0 02345566666 9999


Q ss_pred             eCceEEEEEeCCCccEEEEEEEecCCC---------------------------------C---CCceEEEEEEECCCCC
Q psy12820        111 WNESCEFTVHNPEMALLRFVCQDEDMF---------------------------------G---DSNFIGQATYPVYTNR  154 (156)
Q Consensus       111 w~e~f~f~v~~~~~~~l~~~V~d~~~~---------------------------------~---~~~~iG~~~i~l~~l~  154 (156)
                      |+|.|.|.|..-....+.+-+||+|.-                                 +   .|||+|...+|+++|.
T Consensus       192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP  271 (1103)
T KOG1328|consen  192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP  271 (1103)
T ss_pred             hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence            999999999877667899999998742                                 1   3789999999999875


Q ss_pred             C
Q psy12820        155 F  155 (156)
Q Consensus       155 ~  155 (156)
                      .
T Consensus       272 ~  272 (1103)
T KOG1328|consen  272 P  272 (1103)
T ss_pred             c
Confidence            3

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.20  E-value=4.4e-06  Score=55.73  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=64.9

Q ss_pred             EEEEEeeeeecccC-------C-------CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC----
Q psy12820         60 VLLRVLAARHLTRS-------G-------RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN----  121 (156)
Q Consensus        60 L~v~v~~a~~L~~~-------~-------~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~----  121 (156)
                      |.|.|++|.+|...       +       .-..++||++.+.-.+ +.. .++|+++.++ +.|.|+-.++|.+..    
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~-~~e-~r~TrtVArS-FcPeF~Hh~Efpc~lv~~~   77 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLP-EKE-LRRTRTVARS-FCPEFNHHVEFPCNLVVQR   77 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCC-CCc-eeeccchhhh-cCCCccceEEEecccEEEc
Confidence            45778888877642       1       1135899999975443 233 7899999998 999999999998651    


Q ss_pred             -----------CCccEEEEEEEecCCC----------CCCceEEEEEEECCCCC
Q psy12820        122 -----------PEMALLRFVCQDEDMF----------GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       122 -----------~~~~~l~~~V~d~~~~----------~~~~~iG~~~i~l~~l~  154 (156)
                                 -+.+.+.|+||+...-          .+|-+||.+.+|+.+|-
T Consensus        78 ~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll  131 (143)
T cd08683          78 NSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLL  131 (143)
T ss_pred             CCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHh
Confidence                       1123788999986532          23448999999987653

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02352 phospholipase D epsilon

Probab=98.19  E-value=8.5e-06  Score=68.72  Aligned_cols=83  Identities=11%  Similarity=0.173  Sum_probs=61.4

Q ss_pred             EEEEEEEeeeeecccCC------CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEE
Q psy12820         58 VKVLLRVLAARHLTRSG------RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVC  131 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~------~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V  131 (156)
                      .+|.++|++|..+...-      ....+|||.|.+.+     .+..||   +++ -||+|+|+|.+.+..+-.+.+.|+|
T Consensus        10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-----~~v~rt---~~~-~~p~w~e~f~i~~ah~~~~~~~f~v   80 (758)
T PLN02352         10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-----KKVAKT---SHE-YDRVWNQTFQILCAHPLDSTITITL   80 (758)
T ss_pred             cceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-----cEEecC---CCC-CCCccccceeEEeeeecCCcEEEEE
Confidence            47899999998443220      11239999999842     225677   555 6999999999998876546789999


Q ss_pred             EecCCCCCCceEEEEEEECCCCC
Q psy12820        132 QDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       132 ~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      +|.     -.+||.+.+|+.+|.
T Consensus        81 k~~-----~~~ig~~~~p~~~~~   98 (758)
T PLN02352         81 KTK-----CSILGRFHIQAHQIV   98 (758)
T ss_pred             ecC-----CeEEEEEEEEHHHhh
Confidence            982     479999999987763

>PLN02964 phosphatidylserine decarboxylase

Probab=98.01  E-value=1.3e-05  Score=66.92  Aligned_cols=85  Identities=14%  Similarity=0.270  Sum_probs=68.4

Q ss_pred             eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC
Q psy12820         57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM  136 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~  136 (156)
                      .....|++++|.    ++  ..|+|..+-..|    .+ .+||.+.+++ .||+||+.-.|.+...+....+|.|||.+.
T Consensus        53 ~~~~~~~~~~~~----~~--~~~~~~~~~~~g----~~-~f~t~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (644)
T PLN02964         53 SGIALLTLVGAE----MK--FKDKWLACVSFG----EQ-TFRTETSDST-DKPVWNSEKKLLLEKNGPHLARISVFETNR  120 (644)
T ss_pred             cCeEEEEeehhh----hc--cCCcEEEEEEec----ce-eeeecccccc-CCcccchhhceEeccCCcceEEEEEEecCC
Confidence            346778888886    22  248887655443    44 8999999988 999999998888887778888999999999


Q ss_pred             CCCCceEEEEEEECCCC
Q psy12820        137 FGDSNFIGQATYPVYTN  153 (156)
Q Consensus       137 ~~~~~~iG~~~i~l~~l  153 (156)
                      ++.++++|.+.+++.++
T Consensus       121 ~s~n~lv~~~e~~~t~f  137 (644)
T PLN02964        121 LSKNTLVGYCELDLFDF  137 (644)
T ss_pred             CCHHHhhhheeecHhhc
Confidence            99999999999877554

>KOG1013|consensus

Probab=98.01  E-value=6.1e-07  Score=68.19  Aligned_cols=97  Identities=22%  Similarity=0.257  Sum_probs=73.7

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC---ccEEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE---MALLRFVCQ  132 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~---~~~l~~~V~  132 (156)
                      ...+..+|..|.+|...+ .+..|||++..++.. .....+.+|++..++ +||.|+|+........+   ...+++.|.
T Consensus        92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpg-a~kl~slr~~t~~n~-lN~~w~etev~~~i~~~~~~~K~~Rk~vc  169 (362)
T KOG1013|consen   92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPG-AGKLNSLRTKTTRNT-LNPEWNETEVYEGITDDDTHLKVLRKVVC  169 (362)
T ss_pred             hhhcceeechhcccchhhhhhhcchHHhhhcccc-hhhhhhhhHHhhccC-cCcceeccceecccccchhhhhhhheeec
Confidence            467889999999998876 788999999987643 222335788887776 99999998766532222   236788999


Q ss_pred             ecCCCCCCceEEEEEEECCCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      |.+.+..++++|+..+++..|.+
T Consensus       170 dn~~~~~~~sqGq~r~~lkKl~p  192 (362)
T KOG1013|consen  170 DNDKKTHNESQGQSRVSLKKLKP  192 (362)
T ss_pred             cCcccccccCcccchhhhhccCh
Confidence            99988889999999988877653

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.88  E-value=9.6e-05  Score=52.30  Aligned_cols=92  Identities=24%  Similarity=0.290  Sum_probs=61.3

Q ss_pred             EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEe---CCCccEEEEEEEecC
Q psy12820         59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVH---NPEMALLRFVCQDED  135 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~---~~~~~~l~~~V~d~~  135 (156)
                      .++|+|+++.++.. .....+-||++.+...+..-.....|+...-+ -.+.|||.+.|++.   .|..+.|.|.||+..
T Consensus         9 ~f~i~i~~~~~~~~-~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~-~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           9 KFSITLHKISNLNA-AERTMKVGVQAGLFHGGESLCKTVKTSEVSGK-NDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CEEEEEEEeccCcc-CCCCceEEEEEEEEECCEEccCceEccccCCC-CccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            68999999998875 22345668888776422111113355554443 57999999999876   344569999999864


Q ss_pred             CCC----------------CCceEEEEEEECCC
Q psy12820        136 MFG----------------DSNFIGQATYPVYT  152 (156)
Q Consensus       136 ~~~----------------~~~~iG~~~i~l~~  152 (156)
                      ...                ....||++.++|-+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEc
Confidence            321                23589999988744

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.86  E-value=0.00013  Score=50.63  Aligned_cols=93  Identities=17%  Similarity=0.194  Sum_probs=61.0

Q ss_pred             EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEEEEEEecC
Q psy12820         59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLRFVCQDED  135 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~~~V~d~~  135 (156)
                      .++|+|.+..++........+-||++.+...+........|...... .++.|||.+.|++..   |..+.|.|+||+.+
T Consensus         9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~-~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFS-TSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCC-CCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            57777887777654333446678888876432111213344433332 579999999998653   44469999999976


Q ss_pred             CCC--CCceEEEEEEECCC
Q psy12820        136 MFG--DSNFIGQATYPVYT  152 (156)
Q Consensus       136 ~~~--~~~~iG~~~i~l~~  152 (156)
                      ..+  .+..||++.++|=+
T Consensus        88 ~~~~~~~~~iG~~~~~lFd  106 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFD  106 (156)
T ss_pred             cCCCCcceEEEEEeEEeEc
Confidence            543  45799999998744

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.82  E-value=0.00021  Score=49.84  Aligned_cols=90  Identities=14%  Similarity=0.179  Sum_probs=60.3

Q ss_pred             EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEEEEEEecC
Q psy12820         59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLRFVCQDED  135 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~~~V~d~~  135 (156)
                      .++|+|+++.++...  ...+-||++.+......-.....|+.+..  .++.|||-+.|++..   |..+.|.|+||+..
T Consensus         9 ~~~v~i~~~~~~~~~--~~~~l~V~v~l~~g~~~L~~pv~T~~v~~--~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~   84 (158)
T cd08398           9 NLRIKILCATYVNVN--DIDKIYVRTGIYHGGEPLCDNVNTQRVPC--SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK   84 (158)
T ss_pred             CeEEEEEeeccCCCC--CcCeEEEEEEEEECCEEccCeeEecccCC--CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence            588999999988754  34578999987642211111234444443  479999999998764   44469999999865


Q ss_pred             CCC----CCceEEEEEEECCC
Q psy12820        136 MFG----DSNFIGQATYPVYT  152 (156)
Q Consensus       136 ~~~----~~~~iG~~~i~l~~  152 (156)
                      ...    ....||.+.++|-+
T Consensus        85 ~~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          85 GRKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             cccCCCCceEEEEEEEEEEEC
Confidence            321    12469999998744

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG1327|consensus

Probab=97.73  E-value=8.1e-05  Score=60.40  Aligned_cols=89  Identities=19%  Similarity=0.319  Sum_probs=64.3

Q ss_pred             eeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCce-EEEE-E-eCCCccEEEEEEEecCCCCCC
Q psy12820         65 LAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES-CEFT-V-HNPEMALLRFVCQDEDMFGDS  140 (156)
Q Consensus        65 ~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~-f~f~-v-~~~~~~~l~~~V~d~~~~~~~  140 (156)
                      ++|.+|..++ .+.+|||..+.-...+......++|.+++++ ++|.|.+. ...+ + .......+.+.+||++..+++
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~-l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~  221 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNT-LNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKH  221 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccC-CCCcccccccchhhhcccCCCCceEEEEeccCCCCCc
Confidence            3467777666 7889999988765332223346799999998 99999864 2222 1 222234778999999999999


Q ss_pred             ceEEEEEEECCCCC
Q psy12820        141 NFIGQATYPVYTNR  154 (156)
Q Consensus       141 ~~iG~~~i~l~~l~  154 (156)
                      ++||++..++..++
T Consensus       222 ~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  222 DLIGKFQTTLSELQ  235 (529)
T ss_pred             CceeEecccHHHhc
Confidence            99999998887775

>KOG1326|consensus

Probab=97.57  E-value=1.5e-05  Score=68.13  Aligned_cols=89  Identities=25%  Similarity=0.300  Sum_probs=67.9

Q ss_pred             eeeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCC--------c
Q psy12820         55 VTRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPE--------M  124 (156)
Q Consensus        55 ~~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~--------~  124 (156)
                      .....+++.|..|+.|...+ .+.+|||..+.+.+-      .+.|.++.++ +||.|+++..|. +.-..        .
T Consensus       203 ~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~q------s~~T~~v~~t-l~ptwdq~~~f~~~ei~ge~~~~~~~p  275 (1105)
T KOG1326|consen  203 VIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQ------SKETEVVPGT-LNPTWDQTIIFDEVEIYGEAHLVLKNP  275 (1105)
T ss_pred             hhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccc------cceeEeecCc-CCCCccceeeccceeecCccchhhcCC
Confidence            34456777788888888766 668999999987632      5678888888 999999998886 33111        1


Q ss_pred             cEEEEEEEecCCCCCCceEEEEEEEC
Q psy12820        125 ALLRFVCQDEDMFGDSNFIGQATYPV  150 (156)
Q Consensus       125 ~~l~~~V~d~~~~~~~~~iG~~~i~l  150 (156)
                      ..+.|++||.+..+.++|+|......
T Consensus       276 pi~v~e~yd~dr~g~~ef~gr~~~~p  301 (1105)
T KOG1326|consen  276 PIRVFEVYDLDRSGINEFKGRKKQRP  301 (1105)
T ss_pred             CeEEEEeehhhhhchHHhhcccccce
Confidence            26789999999999999999866543

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.55  E-value=0.00056  Score=47.76  Aligned_cols=76  Identities=18%  Similarity=0.226  Sum_probs=51.9

Q ss_pred             CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEEEEEEecCCCCCCceEEEEEEECCC
Q psy12820         76 CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLRFVCQDEDMFGDSNFIGQATYPVYT  152 (156)
Q Consensus        76 ~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~  152 (156)
                      ..++-||++.+...+..-.....|+...-+ ..+.|||-+.|+|..   |..+.|+|+||+.+..++...+|.+.++|-+
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~-~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFK-NRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCC-CCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            346778888876432111113345444444 578999999999774   3446999999998765556799999998744

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG2060|consensus

Probab=97.53  E-value=3e-05  Score=60.10  Aligned_cols=94  Identities=18%  Similarity=0.275  Sum_probs=67.3

Q ss_pred             eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEe-
Q psy12820         57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD-  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d-  133 (156)
                      ...+.|.|+.|++|....  ...++|||+|++++.+. +..+.+|+...++ ++|.+-....|.-. |....|.+.||. 
T Consensus       268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~-c~ak~ktk~A~kT-~~plyqq~l~f~~s-p~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGF-CIAKKKTKSARKT-LDPLYQQQLSFDQS-PPGKYLQGTVWGD  344 (405)
T ss_pred             cCceeEEEEecccccccCCcccccCceeEEEEcCCCc-eeccccccccccc-CchhhhhhhhhccC-CCccEEEEEEecc
Confidence            357999999999997653  55789999999986532 3347889988888 78877777777644 335688899985 


Q ss_pred             cCCCCCCceEEEEEEECCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l  153 (156)
                      +.....+.|+|.+.+-+.+|
T Consensus       345 ygRmd~k~fmg~aqi~l~eL  364 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDEL  364 (405)
T ss_pred             ccccchHHHhhHHHHHhhhh
Confidence            45555555777665554443

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.34  E-value=0.0025  Score=45.27  Aligned_cols=92  Identities=16%  Similarity=0.152  Sum_probs=56.3

Q ss_pred             EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEEEEEEecC
Q psy12820         59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLRFVCQDED  135 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~~~V~d~~  135 (156)
                      .++|+|.++..+.........-||++.+.... ......+|+...-+ -++.|||-+.|++..   |..+.|.|.||+..
T Consensus        11 ~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~-~~l~~~~T~~~~~~-~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          11 KFRVKILGIDIPVLPRNTDLTVFVEANIQHGQ-QVLCQRRTSPKPFT-EEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CEEEEEEeecccCcCCCCceEEEEEEEEEECC-eecccceeeccCCC-CCccccccEECccccccCChhhEEEEEEEEEe
Confidence            57778888763322222233467887766421 11113355555544 679999999998764   44469999999852


Q ss_pred             CC----------------CCCceEEEEEEECCC
Q psy12820        136 MF----------------GDSNFIGQATYPVYT  152 (156)
Q Consensus       136 ~~----------------~~~~~iG~~~i~l~~  152 (156)
                      ..                ..+..||++.+.|-+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD  121 (178)
T cd08399          89 APALSSKKSAESPSSESKGKHQLLYYVNLLLID  121 (178)
T ss_pred             cCcccccccccccccccccccceEEEEEEEEEc
Confidence            11                124578888887744

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.32  E-value=0.0014  Score=46.26  Aligned_cols=95  Identities=14%  Similarity=0.131  Sum_probs=62.0

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEec--C-CCCCCeeCceEEEEEe---CCCccEEEEE
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVS--D-NGFNPTWNESCEFTVH---NPEMALLRFV  130 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~--~-~~~nP~w~e~f~f~v~---~~~~~~l~~~  130 (156)
                      ..+.|+|.++.+++..- ....+-||.+.+......-.....|+...  + -...+.|||-+.|++.   .|..+.|.|+
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            46889999999988653 33567899998764321111122333221  1 1125779999999865   3445699999


Q ss_pred             EEecCCCC---------CCceEEEEEEECCC
Q psy12820        131 CQDEDMFG---------DSNFIGQATYPVYT  152 (156)
Q Consensus       131 V~d~~~~~---------~~~~iG~~~i~l~~  152 (156)
                      +|+....+         .+..||++.++|=+
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             EEEEecCCccccccccccceEEEEEeEeeEc
Confidence            99865443         34689999998854

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=97.00  E-value=0.0066  Score=41.41  Aligned_cols=55  Identities=25%  Similarity=0.310  Sum_probs=38.1

Q ss_pred             EeEEecCCCCCCeeCceEEEEEe---CCCccEEEEEEEecCCCCCC----ceEEEEEEECCC
Q psy12820         98 TTKTVSDNGFNPTWNESCEFTVH---NPEMALLRFVCQDEDMFGDS----NFIGQATYPVYT  152 (156)
Q Consensus        98 kT~~~~~~~~nP~w~e~f~f~v~---~~~~~~l~~~V~d~~~~~~~----~~iG~~~i~l~~  152 (156)
                      .|+...-+..++.|+|.+.|++.   .|..+.|.|+||+.+.....    ..||++.++|-+
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd   84 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFD   84 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeEC
Confidence            44433322258999999999976   45557999999987655444    689999999854

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>KOG3837|consensus

Probab=96.80  E-value=0.00065  Score=53.58  Aligned_cols=99  Identities=14%  Similarity=0.211  Sum_probs=73.3

Q ss_pred             CceeeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC-c------
Q psy12820         53 VGVTRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE-M------  124 (156)
Q Consensus        53 ~~~~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~-~------  124 (156)
                      .+.....|.+.|+++++++-.. ..-.|-||++++.-.. |...+.+|.+++++ .+|.|+|.|.+.+.... .      
T Consensus       362 ~dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~n-D~~qk~kt~vik~t-~SPdfde~fklni~rg~~~nr~fqR  439 (523)
T KOG3837|consen  362 EDLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLEN-DSRQKLKTDVIKVT-PSPDFDEDFKLNIRRGPGLNREFQR  439 (523)
T ss_pred             cccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccc-cccccCccceeeCC-CCCCcccceeeeccCCCcccHHHHH
Confidence            3455667888999998887554 3345779998876554 44448899999998 89999999999876411 1      


Q ss_pred             ----cEEEEEEEecCCC-CCCceEEEEEEECCCC
Q psy12820        125 ----ALLRFVCQDEDMF-GDSNFIGQATYPVYTN  153 (156)
Q Consensus       125 ----~~l~~~V~d~~~~-~~~~~iG~~~i~l~~l  153 (156)
                          .-++|++++...+ .+|.++|.+.+.+.-|
T Consensus       440 ~fkr~g~kfeifhkggf~rSdkl~gt~nikle~L  473 (523)
T KOG3837|consen  440 RFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEIL  473 (523)
T ss_pred             HHHhcCeeEEEeeccccccccceeceeeeeehhh
Confidence                1588999998654 5677999999877544

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=96.66  E-value=0.063  Score=38.48  Aligned_cols=55  Identities=18%  Similarity=0.321  Sum_probs=40.2

Q ss_pred             ceEEeEEecCCCCCCeeCceEEEEEeCC--CccEEEEEEEecCCCC--CCceEEEEEEEC
Q psy12820         95 LKLTTKTVSDNGFNPTWNESCEFTVHNP--EMALLRFVCQDEDMFG--DSNFIGQATYPV  150 (156)
Q Consensus        95 ~~~kT~~~~~~~~nP~w~e~f~f~v~~~--~~~~l~~~V~d~~~~~--~~~~iG~~~i~l  150 (156)
                      ..++|-+...+ -+|.|+|++.+.++..  +.+.|.|++++.....  ....+|-+.+||
T Consensus        53 se~~S~V~yH~-~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL  111 (189)
T cd08695          53 SEYRSFVLYHN-NSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL  111 (189)
T ss_pred             ceEEEEEEEcC-CCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence            47888888877 7999999999887754  3357888877643221  125789888887

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=96.53  E-value=0.12  Score=36.68  Aligned_cols=56  Identities=18%  Similarity=0.169  Sum_probs=33.3

Q ss_pred             eEEeEEecCCCCCCeeCceEEEEEeCCC--ccEEEEEEEecCCCC-C--CceEEEEEEECCC
Q psy12820         96 KLTTKTVSDNGFNPTWNESCEFTVHNPE--MALLRFVCQDEDMFG-D--SNFIGQATYPVYT  152 (156)
Q Consensus        96 ~~kT~~~~~~~~nP~w~e~f~f~v~~~~--~~~l~~~V~d~~~~~-~--~~~iG~~~i~l~~  152 (156)
                      ...|.+...+ .+|.|+|+|.+++..+.  ...|.|++++...-. +  ...+|-+.+||-+
T Consensus        60 ~~~S~v~yh~-k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHN-KNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT--SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecC-CCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            5677777777 89999999999887543  358889998854322 1  1699999999864

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=96.24  E-value=0.16  Score=36.59  Aligned_cols=56  Identities=11%  Similarity=0.119  Sum_probs=40.2

Q ss_pred             ceEEeEEecCCCCCCeeCceEEEEEeCC--CccEEEEEEEecCCC----CCCceEEEEEEECC
Q psy12820         95 LKLTTKTVSDNGFNPTWNESCEFTVHNP--EMALLRFVCQDEDMF----GDSNFIGQATYPVY  151 (156)
Q Consensus        95 ~~~kT~~~~~~~~nP~w~e~f~f~v~~~--~~~~l~~~V~d~~~~----~~~~~iG~~~i~l~  151 (156)
                      ..++|-+...+ -+|.|+|++.+.+...  ..+.|.|++++....    ..+..+|-+.+||-
T Consensus        53 se~~S~V~Yh~-~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQV-DKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeec-CCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            47788887767 7899999998887744  335888998774321    12347898888873

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=96.09  E-value=0.039  Score=35.36  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=45.1

Q ss_pred             EEEEEeeeeecccCCCC-CCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEEEEEEecC
Q psy12820         60 VLLRVLAARHLTRSGRC-TTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLRFVCQDED  135 (156)
Q Consensus        60 L~v~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~~~V~d~~  135 (156)
                      +.+.+....+....... ..+-||++.+...+..-.....|+.+.-. ..+.|||-+.|++..   |..+.|.|++|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~-~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFF-PSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCC-CCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            44555665555443322 24788998876432111113345544433 568999999998663   44469999999854

Outlier of C2 family.

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=95.80  E-value=0.071  Score=37.02  Aligned_cols=92  Identities=16%  Similarity=0.198  Sum_probs=62.9

Q ss_pred             eeEEEEEEEeeeeecccCCC---CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC------c--
Q psy12820         56 TRVKVLLRVLAARHLTRSGR---CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE------M--  124 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~~---~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~------~--  124 (156)
                      ....|.++|+.|+-.-..-.   +..+..+.+.+.-   ..+ .++|+.+..+ .+|.++|.|-|++....      .  
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f---~~Q-RF~S~~Vp~~-~eP~f~e~Flf~l~~~~~~~~~~~~~   81 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF---RGQ-RFRSKPVPCA-CEPDFNEEFLFELPRDSFGAGSTATT   81 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe---cCc-eEecCCcccc-cCCCCCCcEEEEecccccccccchhH
Confidence            34679999999875433211   4455556665542   234 8899999988 99999999999987543      1  


Q ss_pred             -----cEEEEEEEecCCCCCCceEEEEEEECCC
Q psy12820        125 -----ALLRFVCQDEDMFGDSNFIGQATYPVYT  152 (156)
Q Consensus       125 -----~~l~~~V~d~~~~~~~~~iG~~~i~l~~  152 (156)
                           .-+.+.|-..|..+...++|+..+....
T Consensus        82 lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~  114 (156)
T PF15627_consen   82 LLSISDPIHIVLIRTDPSGETTLVGSHFLDWRK  114 (156)
T ss_pred             hhcCCCceEEEEEEecCCCceEeeeeceehHHH
Confidence                 1466667666666666788888776543

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.03  E-value=0.66  Score=31.26  Aligned_cols=92  Identities=18%  Similarity=0.204  Sum_probs=54.7

Q ss_pred             eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---C-----CccEEE
Q psy12820         57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---P-----EMALLR  128 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~-----~~~~l~  128 (156)
                      ...+.|+|....+++.     .+..+.|.+........ ...|.........-.|+|.|.+.+..   .     +...+.
T Consensus         6 kf~~~l~i~~l~~~p~-----~~~~v~v~wkr~~~~~~-~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~   79 (143)
T PF10358_consen    6 KFQFDLTIHELENLPS-----SNGKVFVKWKRGDKSKG-SGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK   79 (143)
T ss_pred             eEEEEEEEEEeECcCC-----CCCEEEEEEEECCCCcc-ceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence            4568888888888875     22333343332211110 23343333322578999999888652   1     112788


Q ss_pred             EEEEecCCCCCCceEEEEEEECCCCC
Q psy12820        129 FVCQDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       129 ~~V~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      |.|+.....++...+|.+.+.|++..
T Consensus        80 ~~v~~~~~~~~k~~lG~~~inLaey~  105 (143)
T PF10358_consen   80 FSVFEVDGSGKKKVLGKVSINLAEYA  105 (143)
T ss_pred             EEEEEecCCCccceEEEEEEEHHHhh
Confidence            88888753333358999999987653

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>KOG1327|consensus

Probab=94.54  E-value=0.094  Score=43.11  Aligned_cols=57  Identities=21%  Similarity=0.303  Sum_probs=47.4

Q ss_pred             eEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC----CCCceEEEEEEECCCC
Q psy12820         96 KLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF----GDSNFIGQATYPVYTN  153 (156)
Q Consensus        96 ~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~----~~~~~iG~~~i~l~~l  153 (156)
                      ..+|.++.+. +||.|-+.|.++........++|.+++-+..    ...+|+|++...++.+
T Consensus        42 ~~rte~i~~~-~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~i  102 (529)
T KOG1327|consen   42 VGRTEVIRNV-LNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQI  102 (529)
T ss_pred             ccceeeeecc-CCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhh
Confidence            4489999998 9999999998888887788999999986543    4568999998887765

>KOG1452|consensus

Probab=93.93  E-value=0.15  Score=39.36  Aligned_cols=78  Identities=15%  Similarity=0.149  Sum_probs=54.8

Q ss_pred             eEEEEEEEeeeeecccCC--CC-CCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG--RC-TTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~--~~-~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d  133 (156)
                      ...|.+.++.+++|....  .+ ..+-|+.++.     |.+.+.||.+.... .--.|.|+|+.++.+.  ..+.+-||.
T Consensus        50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~-----drqh~aRt~vrs~~-~~f~w~e~F~~Dvv~~--~vl~~lvyS  121 (442)
T KOG1452|consen   50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP-----DRQHPARTRVRSSG-PGFAWAEDFKHDVVNI--EVLHYLVYS  121 (442)
T ss_pred             cceEEEEEecccccccChhccCceeeeeeeeee-----cccCccccccccCC-CCccchhhceeecccc--eeeeEEEee
Confidence            456889999999987542  23 4567887763     45546677765554 7778999999987764  367788888


Q ss_pred             cCCCCCCce
Q psy12820        134 EDMFGDSNF  142 (156)
Q Consensus       134 ~~~~~~~~~  142 (156)
                      |+...++++
T Consensus       122 W~pq~RHKL  130 (442)
T KOG1452|consen  122 WPPQRRHKL  130 (442)
T ss_pred             cCchhhccc
Confidence            876655553

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=92.80  E-value=0.71  Score=32.67  Aligned_cols=55  Identities=18%  Similarity=0.167  Sum_probs=38.9

Q ss_pred             EEeEEecCCCCCCeeCceEEEEEeCC--CccEEEEEEEecCCC-----CCCceEEEEEEECCC
Q psy12820         97 LTTKTVSDNGFNPTWNESCEFTVHNP--EMALLRFVCQDEDMF-----GDSNFIGQATYPVYT  152 (156)
Q Consensus        97 ~kT~~~~~~~~nP~w~e~f~f~v~~~--~~~~l~~~V~d~~~~-----~~~~~iG~~~i~l~~  152 (156)
                      .-+.++..+ -+|.|+|++.+.++..  +...|.|++++-+..     .....+|-+.+||-+
T Consensus        54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            334445555 6899999998887643  345888999885422     335689999999864

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=92.26  E-value=0.97  Score=32.19  Aligned_cols=56  Identities=14%  Similarity=0.118  Sum_probs=40.3

Q ss_pred             ceEEeEEecCCCCCCeeCceEEEEEeCC--CccEEEEEEEecCCCC------CCceEEEEEEECC
Q psy12820         95 LKLTTKTVSDNGFNPTWNESCEFTVHNP--EMALLRFVCQDEDMFG------DSNFIGQATYPVY  151 (156)
Q Consensus        95 ~~~kT~~~~~~~~nP~w~e~f~f~v~~~--~~~~l~~~V~d~~~~~------~~~~iG~~~i~l~  151 (156)
                      ....|.+...+ -+|.|+|++.+++...  +...|.|+.++-+...      ....+|-+.+||-
T Consensus        54 ~~~~S~V~yHn-k~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~  117 (179)
T cd08696          54 TEAYTAVTYHN-KSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL  117 (179)
T ss_pred             eeEEEEEEEeC-CCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence            46788888888 8999999988887643  3458889988743221      1356998888873

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=91.54  E-value=2.7  Score=29.48  Aligned_cols=68  Identities=12%  Similarity=0.135  Sum_probs=46.1

Q ss_pred             CCCCEEEEEEecCCCCCCceEEeEEe--cCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCC
Q psy12820         77 TTSPFVEVEVLGADYDTGLKLTTKTV--SDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYT  152 (156)
Q Consensus        77 ~~dpyv~v~l~~~~~~~~~~~kT~~~--~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~  152 (156)
                      ...-|+++.+-    ++. ..+|+..  ..+ +.-.++|.|.+++... -..|.+.||.... ..+.+|+++.+|+-.
T Consensus        36 ~~~~~ikl~~N----~k~-V~~T~~~~l~~d-F~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~  105 (168)
T PF15625_consen   36 KTRYYIKLFFN----DKE-VSRTRSRPLWSD-FRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPG  105 (168)
T ss_pred             heeEEEEEEEC----CEE-EEeeeeEecCCC-eEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCC
Confidence            34557777663    222 4444433  333 6677789999998752 3578999999876 456899999999754

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=90.19  E-value=2.3  Score=30.49  Aligned_cols=57  Identities=18%  Similarity=0.195  Sum_probs=40.7

Q ss_pred             ceEEeEEecCCCCCCeeCceEEEEEeC--CCccEEEEEEEecCCC---------CCCceEEEEEEECCC
Q psy12820         95 LKLTTKTVSDNGFNPTWNESCEFTVHN--PEMALLRFVCQDEDMF---------GDSNFIGQATYPVYT  152 (156)
Q Consensus        95 ~~~kT~~~~~~~~nP~w~e~f~f~v~~--~~~~~l~~~V~d~~~~---------~~~~~iG~~~i~l~~  152 (156)
                      ....|.+...+ -+|.|.|++.+.+..  .+...|.|+.++-+..         ..+..+|-+.+||-.
T Consensus        56 ~~~~s~V~yh~-k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          56 TSAYAAVLHHN-QNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             eEEEEEEEEcC-CCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            36788888888 899999998887663  3345788999885411         123578988888743

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=86.04  E-value=4.6  Score=31.80  Aligned_cols=85  Identities=19%  Similarity=0.336  Sum_probs=58.5

Q ss_pred             EEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC-------CccEEEEEEE
Q psy12820         60 VLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP-------EMALLRFVCQ  132 (156)
Q Consensus        60 L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~-------~~~~l~~~V~  132 (156)
                      +.|.|++|++.+...  ...-.+...+-|     . ...|-.+..+ -.|.||..+.+.+...       +..-|+++.|
T Consensus         2 ivl~i~egr~F~~~~--~~~~vv~a~~ng-----~-~l~TDpv~~~-~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~   72 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP--RHPIVVEAKFNG-----E-SLETDPVPHT-ESPQFNTELAWECDRKALKQHRLQRTPIKLQCF   72 (340)
T ss_pred             EEEEEecccCCCCCC--CccEEEEEEeCC-----c-eeeecCCCCC-CCceeecceeeeccHHHHHHhhccCCceEEEEE
Confidence            568899999987652  223355555532     2 4566666666 7899998888877632       2236788888


Q ss_pred             ecC-CCCCCceEEEEEEECCCC
Q psy12820        133 DED-MFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       133 d~~-~~~~~~~iG~~~i~l~~l  153 (156)
                      ..+ ..+..+.||.+.++|.+.
T Consensus        73 a~~~~~~~re~iGyv~LdLRsa   94 (340)
T PF12416_consen   73 AVDGSTGKRESIGYVVLDLRSA   94 (340)
T ss_pred             EecCCCCcceeccEEEEEcccc
Confidence            776 456678999999999876

>KOG0904|consensus

Probab=85.72  E-value=2.5  Score=37.17  Aligned_cols=75  Identities=20%  Similarity=0.212  Sum_probs=40.5

Q ss_pred             EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEEEEEEe
Q psy12820         58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLRFVCQD  133 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~~~V~d  133 (156)
                      +.++|+++++..+........--+|++.+.....--....+|..+... -+|.||+.+.|++.-   |..+.|.+.|+.
T Consensus       343 ~~frI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~-~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~  420 (1076)
T KOG0904|consen  343 RPFRIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGC-SFPLWNEWLEFDIYIKDLPRMARLCLAIYA  420 (1076)
T ss_pred             CceEEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCCCCc-cchhccceeEeeeecCCCChhhhheeeeeE
Confidence            457777777765432221112234444443211111112445545544 689999999998763   445677777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
1djg_A	624	Phosphoinositide-Specific Phospholipase C-Delta1 Fr		2e-17
1qas_A	622	1-Phosphatidylinositol-4,5-Bisphosphate Phosphodies		2e-17
3qr1_A	813	Crystal Structure Of L. Pealei Plc21 Length = 813		6e-13
3qr0_A	816	Crystal Structure Of S. Officinalis Plc21 Length =		9e-13
4gnk_B	1235	Crystal Structure Of Galphaq In Complex With Full-l		2e-12
3ohm_B	885	Crystal Structure Of Activated G Alpha Q Bound To I		2e-12
2fju_B	799	Activated Rac1 Bound To Its Effector Phospholipase		6e-08
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		3e-05
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		9e-05
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		1e-04
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		1e-04
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		2e-04

>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat Complexed With Lanthanum Length = 624

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 14/142 (9%)
Query: 17  MQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTR------VKVLLRVLAARHL 70
           M V    F+ NGGCGY+L+PAF+     DP    +   +T+       ++ +R+++ + L
Sbjct: 454 MDVYLGCFQDNGGCGYVLKPAFL----RDPNTTFNSRALTQGPWWRPERLRVRIISGQQL 509
Query: 71  TRSGRCTTS---PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALL 127
            +  +   S   P V VE+ G   DTG +  T  +++NGFNP W+   EF V  P++AL+
Sbjct: 510 PKVNKNKNSIVDPKVIVEIHGVGRDTGSR-QTAVITNNGFNPRWDMEFEFEVTVPDLALV 568
Query: 128 RFVCQDEDMFGDSNFIGQATYP 149
           RF+ +D D    ++FIGQ+T P
Sbjct: 569 RFMVEDYDSSSKNDFIGQSTIP 590

>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase Delta 1 Length = 622

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 14/142 (9%)
Query: 17  MQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTR------VKVLLRVLAARHL 70
           M V    F+ NGGCGY+L+PAF+     DP    +   +T+       ++ +R+++ + L
Sbjct: 452 MDVYLGCFQDNGGCGYVLKPAFL----RDPNTTFNSRALTQGPWWRPERLRVRIISGQQL 507
Query: 71  TRSGRCTTS---PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALL 127
            +  +   S   P V VE+ G   DTG +  T  +++NGFNP W+   EF V  P++AL+
Sbjct: 508 PKVNKNKNSIVDPKVIVEIHGVGRDTGSR-QTAVITNNGFNPRWDMEFEFEVTVPDLALV 566
Query: 128 RFVCQDEDMFGDSNFIGQATYP 149
           RF+ +D D    ++FIGQ+T P
Sbjct: 567 RFMVEDYDSSSKNDFIGQSTIP 588

>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21 Length = 813

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 12/140 (8%)
Query: 16  AMQVNHAKFRMNGGCGYLLRPAFM--FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
           AM VN   F  NG  GYLL+P FM    + +DP+  +++ GV    + +++++A+ L+  
Sbjct: 606 AMCVNLGVFEYNGCSGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDK 665
Query: 74  GRCTTSPFVEVEVLGADYDT-GLKLTTKTVSDNGFNPTWNESCEF--TVHNPEMALLRFV 130
                S +VEVE+ G   DT   K  TKTV++NG +P +NE+      V  P++A++R +
Sbjct: 666 ---QISSYVEVEMYGLPTDTVRKKFKTKTVNNNGMDPYYNENAFVFKKVVLPDLAVVRII 722
Query: 131 CQDEDMFGDSNFIGQATYPV 150
             ++       FIG    P+
Sbjct: 723 VNED----GGKFIGHRLMPL 738

>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21 Length = 816

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 12/140 (8%)
Query: 16  AMQVNHAKFRMNGGCGYLLRPAFM--FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
           AM VN   F  NG  GYLL+P FM    + +DP+  +++ GV    + +++++A+ L+  
Sbjct: 606 AMCVNLGVFEYNGCSGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDK 665
Query: 74  GRCTTSPFVEVEVLGADYDT-GLKLTTKTVSDNGFNPTWNESCEF--TVHNPEMALLRFV 130
                S +VEVE+ G   DT   K  TK + +NG +P ++E       V  P++A++R +
Sbjct: 666 ---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRII 722
Query: 131 CQDEDMFGDSNFIGQATYPV 150
             +E    +  FIG    P+
Sbjct: 723 VSEE----NGKFIGHRVMPL 738

>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 1235

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 13  INKAMQVNHAKFRMNGGCGYLLRPAFMF--SESYDPYDPTSLVGVTRVKVLLRVLAARHL 70
           ++ AMQ+N   F  NG  GYLL+P FM    +S+DP+    + G+    + ++V++ + L
Sbjct: 680 LDVAMQLNAGVFEYNGRSGYLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFL 739
Query: 71  TRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES-CEF-TVHNPEMALLR 128
           +         +VEV++ G   DT  K  T+T   N FNP W+E   +F  V  P +A LR
Sbjct: 740 SDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLR 796
Query: 129 FVCQDEDMFGDSNFIGQATYPVYTNR 154
               +E       F+G    PV   R
Sbjct: 797 IAAFEE----GGKFVGHRILPVSAIR 818

>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 885

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 13  INKAMQVNHAKFRMNGGCGYLLRPAFMF--SESYDPYDPTSLVGVTRVKVLLRVLAARHL 70
           ++ AMQ+N   F  NG  GYLL+P FM    +S+DP+    + G+    + ++V++ + L
Sbjct: 678 LDVAMQLNAGVFEYNGRSGYLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFL 737
Query: 71  TRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESC-EF-TVHNPEMALLR 128
           +         +VEV++ G   DT  K  T+T   N FNP W+E   +F  V  P +A LR
Sbjct: 738 SDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLR 794
Query: 129 FVCQDEDMFGDSNFIGQATYPVYTNR 154
               +E       F+G    PV   R
Sbjct: 795 IAAFEE----GGKFVGHRILPVSAIR 816

>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 799

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 14/140 (10%)
Query: 17  MQVNHAKFRMNGGCGYLLRPAFMF--SESYDPYDPTSLVGVTRVKVLLRVLAARHLT-RS 73
           MQ N A F  NG  GYLL+  FM    + ++P+    +  V    + + V++ + L+ RS
Sbjct: 635 MQQNMAVFEFNGQSGYLLKHEFMRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLSERS 694
Query: 74  GRCTTSPFVEVEVLGADYDTGLKLTTK-TVSDNGFNPTWNESCEF--TVHNPEMALLRFV 130
            R     +VEVE+ G   D   +  TK + S N  NP W E       +  PE+A LR  
Sbjct: 695 VRT----YVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVA 750
Query: 131 CQDEDMFGDSNFIGQATYPV 150
             +E     + F+G    P+
Sbjct: 751 VMEE----GNKFLGHRIIPI 766

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 60  VLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT 118
           V +RV+A   L +      S P+V V +          + TKT+     NP WNE   F 
Sbjct: 22  VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK-KSLNPKWNEEILFR 80
Query: 119 VHNPEMALLRFVCQDEDMFGDSNFIGQATYPVY 151
           VH P+   L F   DE+     +F+GQ   P+Y
Sbjct: 81  VH-PQQHRLLFEVFDENRLTRDDFLGQVDVPLY 112

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 78  TSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137
           ++P+ E+ +    Y      TT+T+ D   NP WN +C+F + +    +L     D D F
Sbjct: 408 SNPYCEISMGSQSY------TTRTIQDT-LNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF 460
Query: 138 GDSNFIGQATYPV 150
              +F+G+   PV
Sbjct: 461 SPDDFLGRTEIPV 473

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 80  PFVEVEVL-GADYDTGLKLTTKTVSDNGFNPTWNESCEF---TVHNPEMALLRFVCQDED 135
           P+V++ +L GA      KL TKT+  N  NP WNE+ ++   T  + +   LR    DED
Sbjct: 52  PYVKLHLLPGASKSN--KLRTKTLR-NTRNPVWNETLQYHGITEEDMQRKTLRISVCDED 108
Query: 136 MFGDSNFIGQATYPV 150
            FG + FIG+  + +
Sbjct: 109 KFGHNEFIGETRFSL 123

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 37  AFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVL-GADYDTGL 95
           A  FS  YD  +      + R K L      + +  +G     P+V++ +L GA      
Sbjct: 15  ALEFSLLYDQDNSNLQCTIIRAKGL------KPMDSNG--LADPYVKLHLLPGASKSN-- 64
Query: 96  KLTTKTVSDNGFNPTWNESCEF---TVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
           KL TKT+  N  NP WNE+ ++   T  + +   LR    DED FG + FIG+  + +
Sbjct: 65  KLRTKTLR-NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 121

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 55  VTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES 114
           + RVKV+  +  A+   +     + P+V++ +  AD +  L L          NP WNE 
Sbjct: 22  ILRVKVVSGIDLAK---KDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEE 78
Query: 115 CEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
             F V NP    L F   DE+     +F+GQ   P+
Sbjct: 79  FYFRV-NPSNHRLLFEVFDENRLTRDDFLGQVDVPL 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	5e-38
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	3e-33
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	1e-32
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	3e-30
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	2e-16
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	3e-16
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	5e-16
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	2e-15
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	1e-14
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-13
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	4e-12
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	5e-12
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-11
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-11
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	3e-11
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-10
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-10
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-10
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-10
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-07
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	3e-10
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	4e-10
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	7e-10
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	8e-10
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	5e-07
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-09
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-09
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	9e-09
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-08
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-08
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-08
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	4e-08
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	2e-07
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-07
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	5e-07
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	6e-07
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-06
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-06
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	3e-06
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	6e-06
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-05
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-05
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-05
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	8e-05
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	9e-05

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score =  135 bits (340), Expect = 5e-38
 Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 6/142 (4%)

Query: 14  NKAMQVNHAKFRMNGGCGYLLRPAFMFSESY--DPYDPTSLVGVTRVKVLLRVLAARHLT 71
              M V    F+ NGGCGY+L+PAF+   +   +    T        ++ +R+++ + L 
Sbjct: 451 GPEMDVYLGCFQDNGGCGYVLKPAFLRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLP 510

Query: 72  RSGRCTTS---PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLR 128
           +  +   S   P V VE+ G   DTG    T  +++NGFNP W+   EF V  P++AL+R
Sbjct: 511 KVNKNKNSIVDPKVIVEIHGVGRDTG-SRQTAVITNNGFNPRWDMEFEFEVTVPDLALVR 569

Query: 129 FVCQDEDMFGDSNFIGQATYPV 150
           F+ +D D    ++FIGQ+T P 
Sbjct: 570 FMVEDYDSSSKNDFIGQSTIPW 591

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A Length = 816

 Score =  122 bits (306), Expect = 3e-33
 Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 12/142 (8%)

Query: 14  NKAMQVNHAKFRMNGGCGYLLRPAFM--FSESYDPYDPTSLVGVTRVKVLLRVLAARHLT 71
           + AM VN   F  NG  GYLL+P FM    + +DP+  +++ GV    + +++++A+ L+
Sbjct: 604 DIAMCVNLGVFEYNGCSGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLS 663

Query: 72  RSGRCTTSPFVEVEVLGADYDTGLK-LTTKTVSDNGFNPTWNESCEF--TVHNPEMALLR 128
                  S +VEVE+ G   DT  K   TK + +NG +P ++E       V  P++A++R
Sbjct: 664 DK---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVR 720

Query: 129 FVCQDEDMFGDSNFIGQATYPV 150
            +  +E    +  FIG    P+
Sbjct: 721 IIVSEE----NGKFIGHRVMPL 738

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} Length = 885

 Score =  120 bits (301), Expect = 1e-32
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 11/141 (7%)

Query: 14  NKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPTSLVGVTRVKVLLRVLAARHLT 71
           + AMQ+N   F  NG  GYLL+P FM     S+DP+    + G+    + ++V++ + L+
Sbjct: 679 DVAMQLNAGVFEYNGRSGYLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFLS 738

Query: 72  RSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES-CEF-TVHNPEMALLRF 129
                    +VEV++ G   DT  K  T+T   N FNP W+E   +F  V  P +A LR 
Sbjct: 739 DR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRI 795

Query: 130 VCQDEDMFGDSNFIGQATYPV 150
              +E       F+G    PV
Sbjct: 796 AAFEE----GGKFVGHRILPV 812

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B Length = 799

 Score =  113 bits (284), Expect = 3e-30
 Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 14  NKAMQVNHAKFRMNGGCGYLLRPAFMFSESY--DPYDPTSLVGVTRVKVLLRVLAARHLT 71
           +  MQ N A F  NG  GYLL+  FM       +P+    +  V    + + V++ + L+
Sbjct: 632 DLPMQQNMAVFEFNGQSGYLLKHEFMRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLS 691

Query: 72  RSGRCTTSPFVEVEVLGADYDTGLKLTTKT-VSDNGFNPTWNESCE--FTVHNPEMALLR 128
                +   +VEVE+ G   D   +  TK   S N  NP W E       +  PE+A LR
Sbjct: 692 ER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLR 748

Query: 129 FVCQDEDMFGDSNFIGQATYPV 150
               +E     + F+G    P+
Sbjct: 749 VAVMEE----GNKFLGHRIIPI 766

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 70.1 bits (172), Expect = 2e-16
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 59  KVLLRVLAARHLTRSG---RCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES 114
           K  + VL A  +T+        T  P+VE+ +         +  T+  +++  NP WNE+
Sbjct: 4   KFTVVVLRATKVTKGAFGDMLDTPDPYVELFIST---TPDSRKRTRHFNND-INPVWNET 59

Query: 115 CEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
            EF +   +  +L     D +   D   +G AT+ V
Sbjct: 60  FEFILDPNQENVLEITLMDANYVMDE-TLGTATFTV 94

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 69.7 bits (171), Expect = 3e-16
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 53  VGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW 111
            G   V ++    +A+ L  +       P+V++              +      G  P W
Sbjct: 9   HGTLEVVLV----SAKGLEDADFLNNMDPYVQLTCRTQ------DQKSNVAEGMGTTPEW 58

Query: 112 NESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
           NE+  FTV       L+    D+D+  + + +G+AT P+
Sbjct: 59  NETFIFTVSEGT-TELKAKIFDKDVGTEDDAVGEATIPL 96

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 69.4 bits (170), Expect = 5e-16
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 39  MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
           +F    D  +   +    RV+V+    A   L +      S P+V V +          +
Sbjct: 9   VFGLLEDEENSRIV----RVRVI----AGIGLAKKDILGASDPYVRVTLYDPMNGVLTSV 60

Query: 98  TTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
            TKT+  +  NP WNE   F VH  +   L F   DE+     +F+GQ   P+
Sbjct: 61  QTKTIKKS-LNPKWNEEILFRVHPQQ-HRLLFEVFDENRLTRDDFLGQVDVPL 111

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 68.8 bits (168), Expect = 2e-15
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 42  ESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTK 100
           E ++         V RVKV+    A   L +      S P+V V +          + TK
Sbjct: 1   ELHNDD-----TRVVRVKVI----AGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTK 51

Query: 101 TVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
           T+  +  NP WNE   F V       + F   DE+     +F+GQ   P+
Sbjct: 52  TIKKS-LNPKWNEEILFRVLPQR-HRILFEVFDENRLTRDDFLGQVDVPL 99

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 65.4 bits (160), Expect = 1e-14
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 13/105 (12%)

Query: 47  YDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDN 105
                 VG+ +V    +VL A  L  +     S PF  +E LG D     +L T TV  N
Sbjct: 6   SGDVKDVGILQV----KVLKAADLLAADFSGKSDPFCLLE-LGND-----RLQTHTVYKN 55

Query: 106 GFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
             NP WN+   F + +    +L     DED     +F+G+   P+
Sbjct: 56  -LNPEWNKVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPL 98

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 62.8 bits (153), Expect = 2e-13
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 59  KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT 118
            + + V +A ++ ++      P V V           K  TK V +   NP WNE  EF 
Sbjct: 8   MLRVIVESASNIPKTKFGKPDPIVSVIFKD------EKKKTKKVDNE-LNPVWNEILEFD 60

Query: 119 VHNPEMAL---LRFVCQDEDMFGDSNFIGQATYPV 150
           +    +     L  + +D +  G +  IG AT  +
Sbjct: 61  LRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVAL 95

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 58.9 bits (143), Expect = 4e-12
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 54  GVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWN 112
           G   +K+ L VL A++L +        PF ++ V G    +G   +T TV +   +P WN
Sbjct: 1   GSEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDG----SGQCHSTDTVKNT-LDPKWN 55

Query: 113 ESCEFTVHNPEMALLRFVCQDEDMFG---DSNFIGQATYPV 150
           +  +  V   +   +     +         + F+G      
Sbjct: 56  QHYDLYVGKTDS--ITISVWNHKKIHKKQGAGFLGCVRLLS 94

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 59.5 bits (144), Expect = 5e-12
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 10/93 (10%)

Query: 59  KVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
           ++ + V++A+            P+VEV V G          T+  ++   +P W +    
Sbjct: 37  QLQITVISAKLKENKKNWFGPSPYVEVTVDGQ------SKKTEKCNNT-NSPKWKQPLTV 89

Query: 118 TVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
            V       L F             +G A   +
Sbjct: 90  IVTPVSK--LHFRVWSHQTLKSDVLLGTAALDI 120

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 57.1 bits (138), Expect = 2e-11
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 20/104 (19%)

Query: 59  KVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
           K+ + V+ A+ L    +  +S P+V V+ +G       K  TKT+  N  NP W E+  F
Sbjct: 18  KISITVVCAQGLQAKDKTGSSDPYVTVQ-VGKT-----KKRTKTIYGN-LNPVWEENFHF 70

Query: 118 TVHNPEMALLRFVCQDED-----------MFGDSNFIGQATYPV 150
             HN     ++    DED                +F+GQ    V
Sbjct: 71  ECHNSS-DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV 113

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 57.3 bits (138), Expect = 3e-11
 Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 15/109 (13%)

Query: 49  PTSLVGVTRVKVL----LRV--LAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKT 101
                G  RV++     L+    + RH           P++ V V     D      T T
Sbjct: 24  TMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV-----DQVRVGQTST 78

Query: 102 VSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
                  PT+NE     V +     L      E   G  +F+   T   
Sbjct: 79  KQKT-NKPTYNEEFCANVTDGGH--LELAVFHETPLGYDHFVANCTLQF 124

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 56.8 bits (137), Expect = 3e-11
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 16/105 (15%)

Query: 54  GVTRVKVL----LRV--LAARHLTRSGRCTTS--PFVEVEVLGADYDTGLKLTTKTVSDN 105
           G+ ++K+     L+    + R        T    P++ + V     D      T T    
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV-----DDSRIGQTATK-QK 59

Query: 106 GFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
             +P W++     V N     +      +   G  +F+   T   
Sbjct: 60  TNSPAWHDEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQF 102

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 18/124 (14%)

Query: 41  SESYDPYDPTSLVGVTRVKVLLR-----------VLAARHL-TRSGRCTTSPFVEVEVLG 88
           + ++D  +  + VG TR+++ L+           ++   +L     +      + V VL 
Sbjct: 16  AAAFDSDESEA-VGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLP 74

Query: 89  ADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMAL--LRF-VCQDEDMFGDSNFIGQ 145
               T     T+ +  +     +NE    ++  P +    LR  VC   D       +G 
Sbjct: 75  CSESTTCLFRTRPLDAS-DTLVFNEVFWVSMSYPALHQKTLRVDVC-TTDRSHLEECLGG 132

Query: 146 ATYP 149
           A   
Sbjct: 133 AQIS 136

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 56.9 bits (136), Expect = 2e-10
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 43  SYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRC----TTSPFVEVEVLGADYDTGLKLT 98
             DPY    +      K  + VL A  +T+        T  P+VE+ +         +  
Sbjct: 3   FIDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT---PDSRKR 59

Query: 99  TKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNR 154
           T+  +++  NP WNE+ EF +   +  +L     D +   D   +G AT+ V + +
Sbjct: 60  TRHFNND-INPVWNETFEFILDPNQENVLEITLMDANYVMDE-TLGTATFTVSSMK 113

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 56.4 bits (136), Expect = 3e-10
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 21/131 (16%)

Query: 28  GGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHL-TRSGRCTTSPFVEVEV 86
             CG +      F+  Y              ++++R+L A  L  +     + P+V++ +
Sbjct: 4   APCGRIS-----FALRYLY---------GSDQLVVRILQALDLPAKDSNGFSDPYVKIYL 49

Query: 87  LGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMAL--LRFVCQDEDMFGDSNFIG 144
           L    D   K  TK       NP +NE+ +F+V   E+A   L F   D D F   + IG
Sbjct: 50  L---PDRKKKFQTKVHRKT-LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIG 105

Query: 145 QATYPVYTNRF 155
           Q          
Sbjct: 106 QVVLDNLLELA 116

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 14/110 (12%)

Query: 39  MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
            FS  Y P         T   + + ++ A +L        S P+V+  ++  +     K 
Sbjct: 142 NFSLCYLP---------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLIS-EGRRLKKR 191

Query: 98  TTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDEDMFGDSNFIGQ 145
            T    +   NPT+NE+  F V    +    L     D D  G +  IG 
Sbjct: 192 KTSIKKNT-LNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGV 240

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 64  VLAARHLT--RSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN 121
           V+ AR LT     + T +P+V+V +L  +     K  T+       +P + +S  F    
Sbjct: 36  VIRARSLTQKPGSKSTPAPYVKVYLL-ENGACIAKKKTRIARKT-LDPLYQQSLVFDESP 93

Query: 122 PEMALLRFVCQDEDMFGDSNFIGQATYPV 150
               L   V  D        F+G A   +
Sbjct: 94  QGKVLQVIVWGDYGRMDHKCFMGVAQILL 122

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 53.6 bits (129), Expect = 4e-10
 Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 7/113 (6%)

Query: 40  FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTT 99
           FS  YD       V V   + L     +   +R     ++P+V++ +L    D      T
Sbjct: 17  FSTQYDLLHNHLTVRVIEARDL-PPPISHDGSRQDMAHSNPYVKICLLP---DQKNSKQT 72

Query: 100 KTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYPV 150
                    P + E   F +   E     L     D D F     IG+ + P+
Sbjct: 73  GVKRKT-QKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL 124

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 53.2 bits (128), Expect = 7e-10
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 59  KVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
            +++ V  A++L        S P+V+++++  D  +  K  TKT+  +  NP WNE+  F
Sbjct: 32  VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIP-DPKSESKQKTKTIKCS-LNPEWNETFRF 89

Query: 118 TVHNPEM-ALLRFVCQDEDMFGDSNFIGQATYPV 150
            +   +    L     D D+   ++F+G  ++ +
Sbjct: 90  QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI 123

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 54.8 bits (132), Expect = 8e-10
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 16/113 (14%)

Query: 40  FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLT 98
           +S  YD             ++L+ ++ A  L       TS P+V+V +L    D   K  
Sbjct: 10  YSLDYDF---------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL---PDKKKKFE 57

Query: 99  TKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYP 149
           TK       NP +NE   F V   E+A   L     D D F   + IG+   P
Sbjct: 58  TKVHR-KTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVP 109

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 14/114 (12%)

Query: 35  RPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDT 93
                FS  Y P         T  K+ + +L A++L +      S P+V++  L  +   
Sbjct: 136 LGDICFSLRYVP---------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIH-LMQNGKR 185

Query: 94  GLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDEDMFGDSNFIGQ 145
             K  T    +   NP +NES  F V   ++    +     D D  G ++ IG+
Sbjct: 186 LKKKKTTIKKNT-LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGK 238

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 16/114 (14%)

Query: 40  FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLT 98
           +S  YD             ++L+ ++ A  L       TS P+V+V +L    D   K  
Sbjct: 25  YSLDYDF---------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL---PDKKKKFE 72

Query: 99  TKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYPV 150
           TK       NP +NE   F V   E+    L     D D F   + IG+   P+
Sbjct: 73  TKVHRKT-LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 125

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 16/114 (14%)

Query: 40  FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLT 98
           +S  YD             ++L+ ++ A  L       TS P+V+V +L    D   K  
Sbjct: 33  YSLDYDF---------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP---DKKKKFE 80

Query: 99  TKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYPV 150
           TK       NP +NE   F V   E+    L     D D F   + IG+   P+
Sbjct: 81  TKVHRKT-LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 133

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 50.0 bits (120), Expect = 9e-09
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 9/90 (10%)

Query: 63  RVLAARHLTRSGRCTTSPFVEVEVLGADYDTG-LKLTTKTVSDNGFNPTWNESCEFTVHN 121
             L A      G C    +V+  V      TG ++  T        + TW E     +  
Sbjct: 31  TRLEAVTSNHDGGC--DCYVQGSVA---NRTGSVEAQTALKKRQ-LHTTWEEGLVLPLAE 84

Query: 122 PEMA--LLRFVCQDEDMFGDSNFIGQATYP 149
            E+    L    +  D F   +  G+    
Sbjct: 85  EELPTATLTLTLRTCDRFSRHSVAGELRLG 114

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 15/115 (13%)

Query: 39  MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLT 98
             +  +            R K+++ V A R+L       + P+V + +L  D     +  
Sbjct: 14  QLTIRHSS---------QRNKLIVVVHACRNLIAFSEDGSDPYVRMYLL-PDKRRSGRRK 63

Query: 99  TKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFG--DSNFIGQATYP 149
           T        NP +++S +F+V  PE+    L    ++   F   D   +G+    
Sbjct: 64  THVSKKT-LNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVA 117

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 15/115 (13%)

Query: 40  FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLT 98
           FS  YD              +   ++ A+ L        + P+V++ +L        KL 
Sbjct: 20  FSLLYDQ---------DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLL-PGASKSNKLR 69

Query: 99  TKTVSDNGFNPTWNESCEFTVHNPEMAL---LRFVCQDEDMFGDSNFIGQATYPV 150
           TKT+ +   NP WNE+ ++     E      LR    DED FG + FIG+  + +
Sbjct: 70  TKTLRNT-RNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 123

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 17/115 (14%)

Query: 40  FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLT 98
           FS  Y+              + ++++ A+ L       TS PFV++ +L    D   KL 
Sbjct: 17  FSVGYNF---------QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLP---DKKHKLE 64

Query: 99  TKTVSDNGFNPTWNESCEFTVHNPEMAL---LRFVCQDEDMFGDSNFIGQATYPV 150
           TK    N  NP WNE+  F     E  +   L     D D F  ++ IG+ + P+
Sbjct: 65  TKVKRKN-LNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 18/116 (15%)

Query: 40  FSESYDPYDPTSLVGVTRVKVLLRVLAARHLT--RSGRCTTSPFVEVEVLGADYDTGLKL 97
           FS  Y+           R   ++ +  AR L        T+ P++++ +L    +   K+
Sbjct: 13  FSLEYNF---------ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILP---EKKHKV 60

Query: 98  TTKTVSDNGFNPTWNESCEFTVHNPEMAL---LRFVCQDEDMFGDSNFIGQATYPV 150
            T+ +     +P ++E+  F            L F     D F   + IG+   P+
Sbjct: 61  KTRVLRKT-LDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL 115

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 21/116 (18%)

Query: 47  YDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVL--------GADYDTGLKL 97
           YD  +L+        + +L AR+L        S PFV+V +L          +     K 
Sbjct: 15  YDLGNLI--------IHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKR 66

Query: 98  TTKTVSDNGFNPTWNESCEFTVHNPEMA---LLRFVCQDEDMFGDSNFIGQATYPV 150
            TK V  +  NP WN++  +   + E      L     D D F  ++F+G+    +
Sbjct: 67  RTKYVQKS-LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 59  KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT 118
            +LL ++  + L      T  P+V++ ++  +        T+TV D   +P ++E   F 
Sbjct: 28  VLLLHIIEGKGLISKQPGTCDPYVKISLIP-EDSRLRHQKTQTVPDC-RDPAFHEHFFFP 85

Query: 119 VHNPEMA--LLRFVCQDEDMFGDSN-FIGQATYPV 150
           V   +    LL  V  +       +  IG  ++ V
Sbjct: 86  VQEEDDQKRLLVTVW-NRASQSRQSGLIGCMSFGV 119

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 16/111 (14%)

Query: 39  MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
            FS  Y P         T  K+ + +L A++L +      S P+V++ ++    +     
Sbjct: 15  CFSLRYVP---------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM---QNGKRLK 62

Query: 98  TTKT-VSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQ 145
             KT +  N  NP +NES  F V   ++    +     D D  G ++ IG+
Sbjct: 63  KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGK 113

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 59  KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT 118
            + + V+  + L        +P+V+  +L  D     K  TK       NPT+NE   ++
Sbjct: 21  TLFIMVMHIKDLVTEDGADPNPYVKTYLL-PDTHKTSKRKTKISRKT-RNPTFNEMLVYS 78

Query: 119 VHNPEMAL---LRFVCQDEDMFGDSNFIGQATYPV 150
            ++ E      L+      +   ++ F+G  T P+
Sbjct: 79  GYSKETLRQRELQLSVLSAESLRENFFLGGITLPL 113

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 64  VLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF-TVHNP 122
              A HL       T  +++V         G +  T  V +N  NP W +  +F  V   
Sbjct: 400 NFRAEHLWGDYTTATDAYLKVFF------GGQEFRTGVVWNN-NNPRWTDKMDFENVLLS 452

Query: 123 EMALLRFVCQDEDMFGDSNFIGQATYPV 150
               LR    D D   D + +G      
Sbjct: 453 TGGPLRVQVWDADYGWDDDLLGSCDRSP 480

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 40  FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTT 99
           FS  Y+    + +V V         LA     +     ++P+V+  +L  D     K  T
Sbjct: 14  FSLKYEQQTQSLVVHVKEC----HQLAYADEAKK---RSNPYVKTYLL-PDKSRQGKRKT 65

Query: 100 KTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYP 149
               D   NP ++E+  + +    +A   L+F       FG + F+G+A   
Sbjct: 66  SIKRDT-VNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQ 116

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 12/90 (13%)

Query: 63  RVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP 122
            V  A+      +   + +V ++V        +K TT  V   G  P+W +   F ++  
Sbjct: 10  GVKKAKFDGAQEKF--NTYVTLKV------QNVKSTTIAV--RGSQPSWEQDFMFEINRL 59

Query: 123 EMALLRFVCQDEDMFGDSNFIGQATYPVYT 152
           ++ L   V  ++ +  D   +G    P+ T
Sbjct: 60  DLGLTVEVW-NKGLIWD-TMVGTVWIPLRT 87

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 16/111 (14%)

Query: 39  MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
           + S  Y           T   + + VL ARHL +S     S P+V+V +    +      
Sbjct: 20  LVSLCYQS---------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLY---HAKKRIS 67

Query: 98  TTKT-VSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQ 145
             KT V     N  +NE   F +    +    + F+  D +    +  IG+
Sbjct: 68  KKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGR 118

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 17/117 (14%)

Query: 40  FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLT 98
               +D             ++++ +L A+ L          P+V++  L    D   K  
Sbjct: 9   IKLWFDK---------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKN-KRR 58

Query: 99  TKTVSDNGFNPTWNESCEFTVHNPEMAL---LRFVCQDEDMF--GDSNFIGQATYPV 150
           TKTV      P WN++  ++  +        L     D+      +S F+G+    +
Sbjct: 59  TKTVKKT-LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL 114

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 14/110 (12%)

Query: 39  MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
           + S  Y+P         +   +++ ++ AR+L       TS P+V+V ++        K 
Sbjct: 6   LLSLCYNP---------SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLM-YKDKRVEKK 55

Query: 98  TTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDEDMFGDSNFIGQ 145
            T T   N  NP +NES  F +   ++    +     D+D    ++ IG+
Sbjct: 56  KTVTKKRN-LNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGK 104

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 17/117 (14%)

Query: 40  FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLT 98
               +D             ++++ +L A+ L          P+V++  L    D   K  
Sbjct: 12  IKLWFDK---------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKN-KRR 61

Query: 99  TKTVSDNGFNPTWNESCEFTVHNPEMAL---LRFVCQDEDMF--GDSNFIGQATYPV 150
           TKTV      P WN++  ++  +        L     D+      +S F+G+    +
Sbjct: 62  TKTVKKT-LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL 117

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 16/111 (14%)

Query: 39  MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
           + S  Y            +  +++ ++   HL        S PFV++ +     D G K 
Sbjct: 27  LVSLMYST---------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLK---PDMGKKA 74

Query: 98  TTKT-VSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQ 145
             KT +     NP +NE   + + + ++A   L     D D+   +++IG 
Sbjct: 75  KHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGG 125

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 39.6 bits (92), Expect = 9e-05
 Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 12/89 (13%)

Query: 62  LRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN 121
           + V  A+      +   + +V ++V          + + T++  G  P+W +   F ++ 
Sbjct: 18  VGVKKAKFDGAQEK--FNTYVTLKVQ--------NVESTTIAVRGSQPSWEQDFMFEINR 67

Query: 122 PEMALLRFVCQDEDMFGDSNFIGQATYPV 150
            ++ L   V  ++ +  D   +G    P+
Sbjct: 68  LDLGLTVEV-WNKGLIWD-TMVGTVWIPL 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	100.0
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	100.0
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	100.0
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	100.0
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.85
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.85
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.83
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.83
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.83
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.82
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.82
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.82
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.82
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.82
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.82
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.82
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.82
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.81
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.81
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.81
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.81
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.81
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.81
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.8
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.8
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.8
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.8
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.8
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.8
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.8
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.8
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.8
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.8
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.79
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.79
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.79
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.77
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.77
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.74
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.72
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.72
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.71
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.7
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.69
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.69
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.68
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.65
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.54
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.41
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.53
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.52
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	96.92
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	96.85
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	96.75
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	96.16
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	95.34

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=100.00  E-value=4.4e-45  Score=299.74  Aligned_cols=152  Identities=32%  Similarity=0.555  Sum_probs=138.3

Q ss_pred             ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC--CCCCCCCCCCCceeeEEEEEEEeeeeecccCC---CC
Q psy12820          2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPTSLVGVTRVKVLLRVLAARHLTRSG---RC   76 (156)
Q Consensus         2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~--~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~~---~~   76 (156)
                      .|||||||| |+|++||||+|||+.||+|||||||++||..  .|+|......++..+..|+|+|++|++|+..+   .+
T Consensus       440 ~QmvAlN~Q-t~d~~m~ln~g~F~~ng~~GYvlKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Vi~A~~L~~~d~~~~~  518 (624)
T 1djx_A          440 CQIVALNFQ-TPGPEMDVYLGCFQDNGGCGYVLKPAFLRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLPKVNKNKNS  518 (624)
T ss_dssp             CCEEEECTT-CCSHHHHHHHHHHHSGGGCSEEECCGGGGCTTCCCCTTSCCSSTTCCCEEEEEEEEEEESCCCCSSCSSS
T ss_pred             ceeeeeccc-CCchHHhHHHHHhhcCCCCccEECCHHHcCCCCCcCcccccccCCccceEEEEEEEEcCCCCcccccccC
Confidence            599999999 9999999999999999999999999999987  58887765556677899999999999999876   57


Q ss_pred             CCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820         77 TTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus        77 ~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      .+||||+|.+.+.+.+.. ++||+++++||+||+|||+|.|.+..++++.|+|.|||+|..+++++||++++||.+|++
T Consensus       519 ~~DPYV~V~l~g~~~d~~-~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~  596 (624)
T 1djx_A          519 IVDPKVIVEIHGVGRDTG-SRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ  596 (624)
T ss_dssp             CCCEEEEEEEESSGGGCE-EEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCC
T ss_pred             CCCcEEEEEEecCCCCcc-eeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCC
Confidence            899999999988665556 889999999889999999999999999889999999999999999999999999999874

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-43  Score=297.51  Aligned_cols=146  Identities=34%  Similarity=0.593  Sum_probs=131.3

Q ss_pred             ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC--CCCCCCCCCCCceeeEEEEEEEeeeeecccCCCCCCC
Q psy12820          2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS   79 (156)
Q Consensus         2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~--~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~d   79 (156)
                      .|||||||| |+|++||||+|||+.||+|||||||.+||..  .|+|.....+++..+.+|+|+|++|++|+..   .+|
T Consensus       668 ~QmVALN~Q-T~d~~m~lN~g~F~~nG~cGYVLKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Visaq~L~~~---~~D  743 (885)
T 3ohm_B          668 CQLVALNFQ-TLDVAMQLNAGVFEYNGRSGYLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFLSDR---KVG  743 (885)
T ss_dssp             CSEECBCTT-CCSHHHHHHHHHHTTGGGCSEEECCGGGTCTTCCCCTTCSSCCTTCCCEEEEEEEEEEESCCSS---CCC
T ss_pred             ceeeeecCC-CCCcccchhhhhhccCCceeeeecCHHHcCCCcCcCCCcCcccCcccceEEEEEEEEeccCccc---CCC
Confidence            599999999 9999999999999999999999999999985  5899876666667788999999999999853   589


Q ss_pred             CEEEEEEecCCCCCCceEEeEEecCCCCCCeeCc-eEEEE-EeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820         80 PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNE-SCEFT-VHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus        80 pyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e-~f~f~-v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      |||+|++.|.+.|...++||+++++||+||+||| +|.|. |..++++.|+|.|||+|    +++||++++||++|++
T Consensus       744 PYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d----ddfiG~~~lpL~~L~~  817 (885)
T 3ohm_B          744 IYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG----GKFVGHRILPVSAIRS  817 (885)
T ss_dssp             EEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT----TEEEEEEEEETTTCCC
T ss_pred             cEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC----ccEEeeEEEEHHHcCC
Confidence            9999999987766654689999999889999999 69999 88899999999999987    7899999999999975

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=100.00  E-value=2.6e-43  Score=295.26  Aligned_cols=146  Identities=29%  Similarity=0.510  Sum_probs=131.1

Q ss_pred             ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC--CCCCCCCCCCCceeeEEEEEEEeeeeecccCCCCCCC
Q psy12820          2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS   79 (156)
Q Consensus         2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~--~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~d   79 (156)
                      .|||||||| |+|++||||+|||+.||+|||||||++||..  .|+|.....+++..+.+|+|+|++|++|+.   +.+|
T Consensus       621 ~QmVAlN~Q-t~d~~m~ln~g~F~~nG~cGYVlKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Visa~~L~~---~~~D  696 (799)
T 2zkm_X          621 CQMVALNFQ-TMDLPMQQNMAVFEFNGQSGYLLKHEFMRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLSE---RSVR  696 (799)
T ss_dssp             CSEECBCTT-CCSHHHHHHHHHTTTGGGCSEEECCGGGTCTTSCCCTTSCCTTTTTTCEEEEEEEEEEESCCS---SCCC
T ss_pred             ceEeeeccc-cCchHHHHHHhhhhccCCCCceECCHHHhCCCccCCCcccccccceeeeeEEEEEEeccccCc---cCCC
Confidence            599999999 9999999999999999999999999999976  688987666667778899999999999985   4689


Q ss_pred             CEEEEEEecCCCCCCceEEeE-EecCCCCCCeeCc-eEEE-EEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820         80 PFVEVEVLGADYDTGLKLTTK-TVSDNGFNPTWNE-SCEF-TVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus        80 pyv~v~l~~~~~~~~~~~kT~-~~~~~~~nP~w~e-~f~f-~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      |||+|++.|.+.+...++||+ ++++||+||+||| +|.| .+..++++.|+|.|||++    +++||++++||++|++
T Consensus       697 PYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d----~d~iG~~~ipl~~L~~  771 (799)
T 2zkm_X          697 TYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNS  771 (799)
T ss_dssp             EEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT----TEEEEEEEEEGGGBCC
T ss_pred             cEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC----CCccceEeeehhhcCC
Confidence            999999998766654478999 8988889999999 7999 899999999999999986    6899999999999875

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=100.00  E-value=3.5e-43  Score=293.81  Aligned_cols=146  Identities=32%  Similarity=0.570  Sum_probs=130.8

Q ss_pred             ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC--CCCCCCCCCCCceeeEEEEEEEeeeeecccCCCCCCC
Q psy12820          2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS   79 (156)
Q Consensus         2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~--~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~d   79 (156)
                      .|||||||| |+|.+||||+|||+.||+|||||||.+||..  .|+|.....+++..+..|+|+|++|++|+..   .+|
T Consensus       593 ~QmVALN~Q-T~d~~m~LN~g~F~~nG~cGYVLKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Visaq~L~~~---~~D  668 (816)
T 3qr0_A          593 CQLVALNFQ-CFDIAMCVNLGVFEYNGCSGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDK---QIS  668 (816)
T ss_dssp             CSEECBCTT-CCSHHHHHHHHHTTTTTTCSEEECCHHHHCTTCCCCTTCCSCCTTSCCEEEEEEEEEEECCCSS---CCC
T ss_pred             ceEEeecCc-CCChhhhhhhhhhccCCceeeeecChHhcCCCcccCCCCCCCcCCccceEEEEEEEEcccCCCC---CCC
Confidence            599999999 9999999999999999999999999999985  5889877666667788999999999999853   589


Q ss_pred             CEEEEEEecCCCCCC-ceEEeEEecCCCCCCeeCce-EEEE-EeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820         80 PFVEVEVLGADYDTG-LKLTTKTVSDNGFNPTWNES-CEFT-VHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus        80 pyv~v~l~~~~~~~~-~~~kT~~~~~~~~nP~w~e~-f~f~-v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      |||+|++.+.+.+.. .++||+++++||+||+|||+ |.|. +..++++.|+|.|||++    +++||++++||++|++
T Consensus       669 PYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d----ddfiG~~~ipL~~L~~  743 (816)
T 3qr0_A          669 SYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN----GKFIGHRVMPLDGIKP  743 (816)
T ss_dssp             EEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT----SCEEEEEEEESTTCCC
T ss_pred             CeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC----CCeeeEEEEEHHHcCC
Confidence            999999998766552 27899999998899999998 9999 88899999999999985    6899999999999985

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.85  E-value=9.1e-22  Score=135.94  Aligned_cols=97  Identities=14%  Similarity=0.106  Sum_probs=82.4

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ...|+|+|++|++|+..+ .+.+||||++++.+.+.+...++||++++++ +||+|||+|.|.+...++  ..|.|+|||
T Consensus        42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~t-lnP~wnE~F~f~v~~~~l~~~~L~~~V~d  120 (155)
T 2z0u_A           42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDAS-DTLVFNEVFWVSMSYPALHQKTLRVDVCT  120 (155)
T ss_dssp             TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECC-SSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred             CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCC-CCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence            357999999999999876 6789999999997533232237899999998 999999999999875433  489999999


Q ss_pred             cCCCCCCceEEEEEEECCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      +|..+++++||++.++++++.
T Consensus       121 ~d~~~~~d~iG~~~i~l~~l~  141 (155)
T 2z0u_A          121 TDRSHLEECLGGAQISLAEVC  141 (155)
T ss_dssp             ECTTSCEEEEEEEEEECTTSC
T ss_pred             CCCCCCCcEEEEEEEEHHHcc
Confidence            999999999999999999884

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.85  E-value=4.6e-21  Score=129.26  Aligned_cols=98  Identities=19%  Similarity=0.308  Sum_probs=82.1

Q ss_pred             eeEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCC--CccEEEEEEE
Q psy12820         56 TRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNP--EMALLRFVCQ  132 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~--~~~~l~~~V~  132 (156)
                      ....|.|+|++|++|+....+.+||||++.+...+.... ++||++++++ +||+|||+|.|. +...  ....|.|+||
T Consensus        18 ~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~-~~kT~v~~~t-~nP~wnE~f~f~~v~~~~l~~~~L~~~V~   95 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTS-KRKTKISRKT-RNPTFNEMLVYSGYSKETLRQRELQLSVL   95 (134)
T ss_dssp             ETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCC-CEECCCCCSC-SSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCc-eecCCcCcCC-CCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence            446899999999999975577899999999875322233 8899999987 999999999998 7643  2358999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      |++..+++++||++.++++++..
T Consensus        96 d~d~~~~~~~lG~~~i~l~~l~~  118 (134)
T 2b3r_A           96 SAESLRENFFLGGITLPLKDFNL  118 (134)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGSCT
T ss_pred             ECCCCCCCcEEEEEEEEhhhccC
Confidence            99999999999999999998753

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=2.9e-20  Score=125.83  Aligned_cols=92  Identities=25%  Similarity=0.355  Sum_probs=80.3

Q ss_pred             eeEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC---CccEEEEEEE
Q psy12820         56 TRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP---EMALLRFVCQ  132 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~---~~~~l~~~V~  132 (156)
                      ....|.|+|++|++|+..+.+.+||||++++.+     . ++||++++++ +||+|||+|.|.+..+   ....|.|+||
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~-----~-~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~~~l~i~V~   77 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKD-----E-KKKTKKVDNE-LNPVWNEILEFDLRGIPLDFSSSLGIIVK   77 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSS-----C-EEECCCCCSC-SSCEEEEEEEEECSSCCCCTTCEEEEEEE
T ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECC-----E-eEEeeeecCC-CCCccCcEEEEEecccccCCCCEEEEEEE
Confidence            346899999999999987668899999999752     3 7899999987 9999999999998764   3468999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      |++..+++++||++.+++.++.
T Consensus        78 d~d~~~~~~~lG~~~i~l~~l~   99 (140)
T 2dmh_A           78 DFETIGQNKLIGTATVALKDLT   99 (140)
T ss_dssp             ETTCSSSCCCCEEEEEEGGGTC
T ss_pred             ECCCCCCCceEEEEEEEHHHhc
Confidence            9999999999999999998874

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.83  E-value=1.6e-20  Score=129.20  Aligned_cols=98  Identities=20%  Similarity=0.281  Sum_probs=82.2

Q ss_pred             eeEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc-cEEEEEEEec
Q psy12820         56 TRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM-ALLRFVCQDE  134 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~-~~l~~~V~d~  134 (156)
                      ....|.|+|++|++|+..+.+.+||||++.+.+...... +++|++++++ +||+|||+|.|.+...+. ..|.|+|||+
T Consensus        25 ~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~-~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~L~i~V~d~  102 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLR-HQKTQTVPDC-RDPAFHEHFFFPVQEEDDQKRLLVTVWNR  102 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTT-CEECCCCTTC-SSCEEEEEEEEECCGGGTTSEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCcc-EEeccccCCC-CCCccccEEEEecccHHhCCEEEEEEEeC
Confidence            346899999999999987778899999999875433334 8899999988 999999999999854333 4699999999


Q ss_pred             CCCCC-CceEEEEEEECCCCCC
Q psy12820        135 DMFGD-SNFIGQATYPVYTNRF  155 (156)
Q Consensus       135 ~~~~~-~~~iG~~~i~l~~l~~  155 (156)
                      +..++ +++||++.+++++|..
T Consensus       103 d~~~~~d~~lG~~~i~l~~l~~  124 (153)
T 3fbk_A          103 ASQSRQSGLIGCMSFGVKSLLT  124 (153)
T ss_dssp             CSSGGGCEEEEEEEEEHHHHTC
T ss_pred             CCCCCCCcEEEEEEEEHHHhcC
Confidence            98876 8999999999988763

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.83  E-value=5.1e-20  Score=126.47  Aligned_cols=97  Identities=29%  Similarity=0.455  Sum_probs=77.5

Q ss_pred             eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec
Q psy12820         56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE  134 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~  134 (156)
                      ....|+|+|++|++|+..+ .+.+||||++.+.+.......+++|++++++ +||+|||+|.|.+..+ ...|.|+|||+
T Consensus        18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~-~~~l~~~V~d~   95 (153)
T 3b7y_A           18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKS-LNPKWNEEILFRVHPQ-QHRLLFEVFDE   95 (153)
T ss_dssp             TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSC-SSCCCCEEEEEEECTT-TCEEEEEEEEC
T ss_pred             CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCC-CCCCCCCEEEEEecCC-CCEEEEEEEEC
Confidence            4578999999999999876 6789999999987421111237899999998 9999999999998864 46899999999


Q ss_pred             CCCCCCceEEEEEEECCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~  154 (156)
                      +..+++++||++.+++.++.
T Consensus        96 d~~~~d~~iG~~~i~l~~l~  115 (153)
T 3b7y_A           96 NRLTRDDFLGQVDVPLYPLP  115 (153)
T ss_dssp             CSSSCCEEEEEEEEECCSCC
T ss_pred             CCCcCCCeeEEEEEEHHHcc
Confidence            99999999999999999875

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.82  E-value=3e-20  Score=123.56  Aligned_cols=94  Identities=24%  Similarity=0.418  Sum_probs=80.3

Q ss_pred             eEEEEEEEeeeeecccC---C-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRS---G-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQ  132 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~---~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~  132 (156)
                      ...|.|+|++|++|+..   + .+.+||||++.+.+.+  .. ++||++++++ +||+|||+|.|.+..++...|.|.||
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~--~~-~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~l~i~V~   77 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP--DS-RKRTRHFNND-INPVWNETFEFILDPNQENVLEITLM   77 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTST--TC-CEECCCCTTC-SSCEEEEEEEEEECTTSCCEEEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCC--Cc-eEEccccCCC-CCCcccceEEEEecCCCCCEEEEEEE
Confidence            36799999999999974   2 5789999999986421  23 8899999987 99999999999998777789999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      |++..+ +++||++.++++++..
T Consensus        78 d~d~~~-~~~iG~~~i~l~~l~~   99 (126)
T 1rlw_A           78 DANYVM-DETLGTATFTVSSMKV   99 (126)
T ss_dssp             ECCSSC-CEEEEEEEEEGGGSCT
T ss_pred             ECCCCC-CceeEEEEEEHHHccC
Confidence            999875 8899999999988753

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.82  E-value=3.1e-20  Score=127.14  Aligned_cols=96  Identities=22%  Similarity=0.408  Sum_probs=81.4

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc-cEEEEEEEec
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM-ALLRFVCQDE  134 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~-~~l~~~V~d~  134 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+.+...... ++||++++++ +||+|||+|.|.+...+. ..|.|+|||+
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~-~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~L~i~V~d~  107 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSES-KQKTKTIKCS-LNPEWNETFRFQLKESDKDRRLSVEIWDW  107 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSS-CEECCCCSSC-SSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcc-eEecceeCCC-CCCcCCcEEEEEeccccCCCEEEEEEEEC
Confidence            357999999999999876 67899999999875432233 8899999997 999999999999876543 4899999999


Q ss_pred             CCCCCCceEEEEEEECCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~  154 (156)
                      +..+++++||++.+++.++.
T Consensus       108 d~~~~~~~iG~~~i~l~~l~  127 (149)
T 1a25_A          108 DLTSRNDFMGSLSFGISELQ  127 (149)
T ss_dssp             CSSSCCEEEEEEEEEHHHHT
T ss_pred             CCCCCCCEEEEEEEEHHHhC
Confidence            99989999999999987764

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.82  E-value=9.1e-20  Score=126.94  Aligned_cols=95  Identities=17%  Similarity=0.293  Sum_probs=80.3

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+.+.+.... +++|++++++ +||+|||+|.|.+...++  ..|.|+|||
T Consensus        36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~-~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~L~i~V~d  113 (166)
T 2cm5_A           36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKA-KHKTQIKKKT-LNPEFNEEFFYDIKHSDLAKKSLDISVWD  113 (166)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CC-EEECCCCCSC-SSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccc-eEeCCcccCC-CCCcccceEEEEcchHhcCCCEEEEEEEE
Confidence            357999999999999876 67899999999875432233 8899999987 999999999999876554  389999999


Q ss_pred             cCCCCCCceEEEEEEECCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l  153 (156)
                      ++..+++++||++.+++.++
T Consensus       114 ~d~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A          114 YDIGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             CCSSSCCEEEEEEEEETTCC
T ss_pred             CCCCCCCcEEEeEEEecccC
Confidence            99999999999999999875

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.82  E-value=5.7e-20  Score=123.32  Aligned_cols=91  Identities=21%  Similarity=0.372  Sum_probs=77.6

Q ss_pred             eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec
Q psy12820         56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE  134 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~  134 (156)
                      ...+|+|+|++|++|+..+ .+.+||||++.+.+.   .. +++|++++++ +||+|||+|.|.+..++  .|.|+|||+
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~---~~-~~kT~v~~~t-~nP~wne~f~f~v~~~~--~l~~~v~d~   75 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS---GQ-CHSTDTVKNT-LDPKWNQHYDLYVGKTD--SITISVWNH   75 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT---CC-EEECCCCSSC-SSCEEEEEEEEEEETTC--CEEEEEEEG
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC---Cc-eEECCccCCC-CCCCccCEEEEEeCCCC--EEEEEEEEC
Confidence            4578999999999998876 678999999998432   23 8899999887 99999999999998764  499999999


Q ss_pred             CCCCC---CceEEEEEEECCCC
Q psy12820        135 DMFGD---SNFIGQATYPVYTN  153 (156)
Q Consensus       135 ~~~~~---~~~iG~~~i~l~~l  153 (156)
                      +..++   +++||++.++++++
T Consensus        76 d~~~~~~~d~~lG~~~i~l~~l   97 (132)
T 3pyc_A           76 KKIHKKQGAGFLGCVRLLSNAI   97 (132)
T ss_dssp             GGTTSSTTTTEEEEEEECHHHH
T ss_pred             CCCCCCCCCCceEEEEEeHHHh
Confidence            98876   78999999997765

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.82  E-value=3.4e-20  Score=125.86  Aligned_cols=97  Identities=27%  Similarity=0.508  Sum_probs=81.1

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCCc--cEEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPEM--ALLRFVCQ  132 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~~--~~l~~~V~  132 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+.+... ...++||++++++ +||+|||+|.|. +...+.  ..|.|+||
T Consensus        28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-~~~~~kT~v~~~t-~nP~wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGAS-KSNKLRTKTLRNT-RNPVWNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCS-GGGEEECCCCCSC-SSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCC-CcceeeCCcCCCC-CCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence            458999999999999876 67899999999875322 2238899999987 999999999998 554332  58999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      |++..+++++||++.+++.++..
T Consensus       106 d~d~~~~d~~iG~~~i~l~~l~~  128 (142)
T 2chd_A          106 DEDKFGHNEFIGETRFSLKKLKA  128 (142)
T ss_dssp             EECTTSCEEEEEEEEEEGGGCCT
T ss_pred             ECCCCCCCcEEEEEEEEHHHcCC
Confidence            99999989999999999998753

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.82  E-value=1.3e-19  Score=122.45  Aligned_cols=95  Identities=20%  Similarity=0.427  Sum_probs=80.7

Q ss_pred             eEEEEEEEeeeeecccCCC--CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCCc--cEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSGR--CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPEM--ALLRFVC  131 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~~--~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~~--~~l~~~V  131 (156)
                      ...|.|+|++|++|+..+.  +.+||||++.+.+.  +.. +++|++++++ +||+|||+|.|. +...++  ..|.|+|
T Consensus        21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~--~~~-~~kT~v~~~t-~nP~wne~f~f~~v~~~~~~~~~l~i~V   96 (138)
T 1ugk_A           21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE--KKH-KVKTRVLRKT-LDPAFDETFTFYGIPYTQIQELALHFTI   96 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETT--TCS-EEECCCCSSC-SSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecC--CCc-eEecCcCcCC-CCCcEeeEEEEcCcCHHHhccCEEEEEE
Confidence            3579999999999998763  78999999998742  233 8999999987 999999999996 665544  5899999


Q ss_pred             EecCCCCCCceEEEEEEECCCCCC
Q psy12820        132 QDEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       132 ~d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      ||++..+++++||++.++|.++..
T Consensus        97 ~d~d~~~~~~~lG~~~i~l~~l~~  120 (138)
T 1ugk_A           97 LSFDRFSRDDIIGEVLIPLSGIEL  120 (138)
T ss_dssp             EEECSSCCCCCCEEEEEECTTCCC
T ss_pred             EECCCCCCCcEEEEEEEehhHccC
Confidence            999999999999999999998853

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.82  E-value=4.5e-20  Score=124.40  Aligned_cols=94  Identities=23%  Similarity=0.375  Sum_probs=80.2

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d~  134 (156)
                      ..|.|+|++|++|+..+ .+.+||||++.+.+.+... .+++|++++++ .||+|||+|.|.+...++  ..|.|+|||+
T Consensus        16 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~-~~~kT~~~~~t-~nP~wne~f~f~v~~~~l~~~~l~~~V~d~   93 (138)
T 3n5a_A           16 NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRV-EKKKTVTKKRN-LNPIFNESFAFDIPTEKLRETTIIITVMDK   93 (138)
T ss_dssp             TEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEE-EEEECCCCSSC-SSCEEEEEEEEECCGGGGGGEEEEEEEEEC
T ss_pred             CeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCcc-ceEeCccccCC-CCCcCcceEEEECChhhcCceEEEEEEEEC
Confidence            57999999999999875 6689999999987532222 37899999988 999999999999876654  5899999999


Q ss_pred             CCCCCCceEEEEEEECCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l  153 (156)
                      +..+++++||++.++++++
T Consensus        94 ~~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           94 DKLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             CSSSCCEEEEEEEESSSSC
T ss_pred             CCCCCCcEEEEEEEccccC
Confidence            9999999999999999875

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.81  E-value=6.6e-20  Score=125.97  Aligned_cols=94  Identities=22%  Similarity=0.268  Sum_probs=76.1

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+.+.+. ...++||++++++ +||+|||+|.|.+...++  ..|.|+|||
T Consensus        29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~l~v~V~d  106 (153)
T 1w15_A           29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKK-RISKKKTHVKKCT-PNAVFNELFVFDIPCESLEEISVEFLVLD  106 (153)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTE-EEEEEECCCCCSC-SSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCe-EeceEecCcccCC-CCCeecceEEEECCHHHhCceEEEEEEEe
Confidence            357999999999999876 67899999999864221 1126799999987 999999999999887655  589999999


Q ss_pred             cCCCCCCceEEEEEEECCC
Q psy12820        134 EDMFGDSNFIGQATYPVYT  152 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~  152 (156)
                      ++..+++++||++.+++++
T Consensus       107 ~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          107 SERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             CCTTSCCEEEEEEEESTTC
T ss_pred             CCCCCCCcEEEEEEECCCC
Confidence            9999999999999999987

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.81  E-value=4.3e-20  Score=125.49  Aligned_cols=95  Identities=28%  Similarity=0.437  Sum_probs=80.9

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+...  +.. +++|++++++ .||+|||+|.|.+...++  ..|.|+|||
T Consensus        33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~-~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~L~i~V~d  108 (143)
T 3f04_A           33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD--KKK-KFETKVHRKT-LNPVFNEQFTFKVPYSELGGKTLVMAVYD  108 (143)
T ss_dssp             TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESC--CSC-CEECCCCCSC-SSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECC--CCc-cEECccCcCC-CCCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence            357999999999998876 678999999998642  233 7899999988 999999999999875443  689999999


Q ss_pred             cCCCCCCceEEEEEEECCCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      ++..+++++||++.++|+++..
T Consensus       109 ~d~~~~~~~iG~~~i~l~~l~~  130 (143)
T 3f04_A          109 FDRFSKHDIIGEFKVPMNTVDF  130 (143)
T ss_dssp             CCSSSCCEEEEEEEEEGGGCCT
T ss_pred             CCCCCCCceEEEEEEEHHHccC
Confidence            9999999999999999988753

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.81  E-value=4.3e-20  Score=126.27  Aligned_cols=95  Identities=19%  Similarity=0.344  Sum_probs=80.3

Q ss_pred             eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQ  132 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~  132 (156)
                      ...|.|+|++|++|+..+  .+.+||||++.+.+.... ..+++|++++++ +||+|||+|.|.+...+.  ..|.|+||
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~-~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~~L~~~V~   99 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSR-QGKRKTSIKRDT-VNPLYDETLRYEIPESLLAQRTLQFSVW   99 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSG-GGEEECCCCSSC-SSCEEEEEEEEECCSTTGGGCEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcc-cCccccccCCCC-CCCcEeeEEEEEeChhHhCceEEEEEEE
Confidence            357999999999999765  578999999998743222 238899999988 999999999999887654  37999999


Q ss_pred             ecCCCCCCceEEEEEEECCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l  153 (156)
                      |++..+++++||++.++|+++
T Consensus       100 d~d~~~~~~~iG~~~i~l~~l  120 (148)
T 3fdw_A          100 HHGRFGRNTFLGEAEIQMDSW  120 (148)
T ss_dssp             EECGGGCEEEEEEEEEEHHHH
T ss_pred             ECCCCcCCcEEEEEEEEcccc
Confidence            999998999999999998765

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.81  E-value=7e-20  Score=126.56  Aligned_cols=90  Identities=20%  Similarity=0.162  Sum_probs=76.4

Q ss_pred             eeEEEEEEEeeeeecccCC-----------CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc
Q psy12820         56 TRVKVLLRVLAARHLTRSG-----------RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM  124 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~-----------~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~  124 (156)
                      ....|+|+|++|++|+..+           .+.+||||++.+.     .....||++++++ +||+|||+|.|.+..  .
T Consensus        27 ~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~-----~~~~~kT~v~~kt-lnP~WNE~F~f~v~~--~   98 (157)
T 2fk9_A           27 FNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD-----QVRVGQTSTKQKT-NKPTYNEEFCANVTD--G   98 (157)
T ss_dssp             EEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEET-----TEEEEECCCCSSC-SSCEEEEEEEEEEEE--E
T ss_pred             CccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEEC-----CEeeEEeeecCCC-CCCccCcEEEEEcCC--C
Confidence            4678999999999998764           2568999999973     2225689998887 999999999999874  3


Q ss_pred             cEEEEEEEecCCCCCCceEEEEEEECCCC
Q psy12820        125 ALLRFVCQDEDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       125 ~~l~~~V~d~~~~~~~~~iG~~~i~l~~l  153 (156)
                      ..|.|+|||++.++++++||++.|+++++
T Consensus        99 ~~L~~~V~D~d~~~~dd~iG~~~i~l~~l  127 (157)
T 2fk9_A           99 GHLELAVFHETPLGYDHFVANCTLQFQEL  127 (157)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHHH
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEEEHHHh
Confidence            58999999999999999999999998765

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.81  E-value=8.2e-20  Score=125.47  Aligned_cols=94  Identities=28%  Similarity=0.394  Sum_probs=80.2

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC--ccEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE--MALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~--~~~l~~~V~d  133 (156)
                      ...|+|+|++|++|+..+ .+.+||||++.+...  +.. +++|++++++ +||+|||+|.|.+..++  ...|.|+|||
T Consensus        41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~-~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~L~i~V~d  116 (152)
T 1rsy_A           41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD--KKK-KFETKVHRKT-LNPVFNEQFTFKVPYSELGGKTLVMAVYD  116 (152)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETT--CCS-CEECCCCTTC-SSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcC--CCc-eEeccccCCC-CCCcCcccEEEeecHHHcCCCEEEEEEEE
Confidence            358999999999999876 678999999998732  233 7899999988 99999999999876543  3689999999


Q ss_pred             cCCCCCCceEEEEEEECCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ++.++++++||++.+++.++.
T Consensus       117 ~d~~~~~~~iG~~~i~l~~l~  137 (152)
T 1rsy_A          117 FDRFSKHDIIGEFKVPMNTVD  137 (152)
T ss_dssp             CCSSSCCEEEEEEEEEGGGCC
T ss_pred             CCCCCCCcEEEEEEEEchhcc
Confidence            999989999999999998874

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.81  E-value=2.3e-19  Score=126.05  Aligned_cols=97  Identities=26%  Similarity=0.411  Sum_probs=75.7

Q ss_pred             eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec
Q psy12820         56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE  134 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~  134 (156)
                      ....|.|+|++|++|+..+ .+.+||||++.+.+.......+++|++++++ +||+|||+|.|.+... ...|.|.|||+
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~v~~~-~~~L~~~V~d~   83 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKS-LNPKWNEEILFRVLPQ-RHRILFEVFDE   83 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSC-SSCEEEEEEEEEECTT-TCEEEEEEEEC
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCC-CCCcccceEEEEEcCC-CCEEEEEEEEC
Confidence            3578999999999998875 6789999999987532111136899999987 9999999999998854 46899999999


Q ss_pred             CCCCCCceEEEEEEECCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~  154 (156)
                      +.++++++||++.++|.++.
T Consensus        84 d~~~~d~~lG~~~i~l~~l~  103 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLP  103 (176)
T ss_dssp             C----CEEEEEEEEESCSCC
T ss_pred             CCCCCCcEEEEEEEEHHHcc
Confidence            99999999999999999875

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.80  E-value=1e-19  Score=121.45  Aligned_cols=95  Identities=23%  Similarity=0.419  Sum_probs=74.9

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEE-eCC--CccEEEEEEEe
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTV-HNP--EMALLRFVCQD  133 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v-~~~--~~~~l~~~V~d  133 (156)
                      ..|.|+|++|++|+..+ .+.+||||++.+.+.+.+.. +++|++++++ .||+|||+|.|.+ ...  ....|.|+|||
T Consensus        18 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~-~~kT~v~~~t-~nP~wne~f~f~~~~~~~~~~~~l~~~V~d   95 (129)
T 2bwq_A           18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKN-KRRTKTVKKT-LEPKWNQTFIYSPVHRREFRERMLEITLWD   95 (129)
T ss_dssp             TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGG-EEECCCCSSB-SSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCc-ceecccccCC-CCCccccEEEEccCCHHHhcCCeEEEEEEE
Confidence            57999999999999876 67789999999875332233 8899999988 9999999999984 322  23589999999


Q ss_pred             cCCCCC--CceEEEEEEECCCCC
Q psy12820        134 EDMFGD--SNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~--~~~iG~~~i~l~~l~  154 (156)
                      ++..++  +++||++.+++.++.
T Consensus        96 ~d~~~~~~~~~lG~~~i~l~~l~  118 (129)
T 2bwq_A           96 QARVREEESEFLGEILIELETAL  118 (129)
T ss_dssp             C-------CEEEEEEEEEGGGCC
T ss_pred             CCcCcCcCCceeEEEEEEccccC
Confidence            999886  899999999998864

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=1.2e-19  Score=122.98  Aligned_cols=95  Identities=26%  Similarity=0.432  Sum_probs=79.3

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC---CccEEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP---EMALLRFVCQ  132 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~---~~~~l~~~V~  132 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+.+.  +.. ++||++++++ +||+|||+|.|.+...   ....|.|+||
T Consensus        25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~-~~kT~v~~~t-~nP~wne~f~f~~~~~~~~~~~~l~i~V~  100 (141)
T 2d8k_A           25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD--KKH-KLETKVKRKN-LNPHWNETFLFEGFPYEKVVQRILYLQVL  100 (141)
T ss_dssp             SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESC--CSS-EEECCCCTTC-SSCCCCEEEEECSCCHHHHTTSEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECC--CCc-cEeCceEcCC-CCCccccEEEECccCHHHcccCEEEEEEE
Confidence            457999999999999876 678999999998642  233 8899999887 9999999999984321   2358999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      |++..+++++||++.+++.++..
T Consensus       101 d~d~~~~~~~iG~~~i~l~~l~~  123 (141)
T 2d8k_A          101 DYDRFSRNDPIGEVSIPLNKVDL  123 (141)
T ss_dssp             ECCSSSSCEEEEEEEEETTTSCT
T ss_pred             ECCCCCCCcEEEEEEEEhhhhcC
Confidence            99999899999999999998753

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.80  E-value=1.5e-19  Score=124.94  Aligned_cols=95  Identities=21%  Similarity=0.311  Sum_probs=79.6

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+.+.+. ...+++|++++++ +||+|||+|.|.+..+++  ..|.|+|||
T Consensus        24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~-~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~l~i~V~d  101 (159)
T 1tjx_A           24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK-RLKKKKTTIKKNT-LNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (159)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTE-EEEEEECCCCCSC-SSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCc-eeceeeCceecCC-CCCcccceEEEEcCHHHhCCcEEEEEEEE
Confidence            347999999999999876 67899999999864321 1237899999987 999999999999876543  479999999


Q ss_pred             cCCCCCCceEEEEEEECCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l  153 (156)
                      ++..+++++||++.+++.++
T Consensus       102 ~d~~~~~~~iG~~~i~l~~~  121 (159)
T 1tjx_A          102 YDKIGKNDAIGKVFVGYNST  121 (159)
T ss_dssp             CCSSSCCEEEEEEEEETTCC
T ss_pred             CCCCCCCceEEEEEECCCCC
Confidence            99999999999999999864

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=1.1e-19  Score=123.28  Aligned_cols=95  Identities=22%  Similarity=0.408  Sum_probs=78.0

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ...|.|+|++|++|+..+ .+ +||||++.+.+.+.... +++|++++++ +||+|||+|.|.+...++  ..|.|+|||
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~-~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~L~i~V~d   99 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSG-RRKTHVSKKT-LNPVFDQSFDFSVSLPEVQRRTLDVAVKN   99 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSS-CEECCCCCSC-SSCEEEEEEEECCCHHHHHHCEEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCC-cccCCccCCC-CCCCcCceEEEEecHHHhCcCEEEEEEEE
Confidence            357999999999999876 56 99999999875332223 8899999988 999999999998764433  389999999


Q ss_pred             cCCCCC--CceEEEEEEECCCCC
Q psy12820        134 EDMFGD--SNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~--~~~iG~~~i~l~~l~  154 (156)
                      ++.+++  +++||++.+++.++.
T Consensus       100 ~d~~~~~~~~~iG~~~i~l~~~~  122 (142)
T 2dmg_A          100 SGGFLSKDKGLLGKVLVALASEE  122 (142)
T ss_dssp             CCCSSCCSCCCCEEEEEECCCST
T ss_pred             CCCccccCCcEEEEEEEeccccc
Confidence            998763  579999999998864

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.80  E-value=2.2e-19  Score=120.94  Aligned_cols=91  Identities=21%  Similarity=0.334  Sum_probs=78.7

Q ss_pred             eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec
Q psy12820         56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE  134 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~  134 (156)
                      ....|+|+|++|++|+..+ .+.+||||++++.+     . +.+|+++++++.||+|||+|.|.+.. ....|.|+|||+
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~-~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~   80 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-----Q-DQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDK   80 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-----C-EEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCS
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEECC-----c-cceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEEC
Confidence            4578999999999999876 67899999998742     2 67999998333999999999999986 456899999999


Q ss_pred             CCCCCCceEEEEEEECCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l  153 (156)
                      +..+++++||++.+++.++
T Consensus        81 ~~~~~d~~lG~~~i~l~~l   99 (136)
T 1wfj_A           81 DVGTEDDAVGEATIPLEPV   99 (136)
T ss_dssp             SSCTTTCCSEEEEEESHHH
T ss_pred             CCCCCCceEEEEEEEHHHh
Confidence            9999999999999999876

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.80  E-value=4e-19  Score=121.34  Aligned_cols=91  Identities=31%  Similarity=0.461  Sum_probs=79.7

Q ss_pred             eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec
Q psy12820         56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE  134 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~  134 (156)
                      ....|.|+|++|++|+..+ .+.+||||++.+.     .. +++|++++++ +||.|||+|.|.+..++ ..|.|+|||+
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~-~~kT~~~~~t-~nP~Wne~f~f~v~~~~-~~l~~~v~d~   86 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG-----KT-KKRTKTIYGN-LNPVWEENFHFECHNSS-DRIKVRVLDE   86 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEET-----TE-EEECCCCCSC-SSCEEEEEEEEEECSTT-CEEEEEEEEC
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC-----CE-EEECCccCCC-CCCCcccEEEEEecCCC-CEEEEEEEEC
Confidence            3578999999999999876 6789999999982     23 7899999988 99999999999998764 6899999999


Q ss_pred             CCC-----------CCCceEEEEEEECCCCC
Q psy12820        135 DMF-----------GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~-----------~~~~~iG~~~i~l~~l~  154 (156)
                      +..           +++++||++.++++++.
T Consensus        87 d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~  117 (148)
T 3kwu_A           87 DDDIKSRVKQRFKRESDDFLGQTIIEVRTLS  117 (148)
T ss_dssp             CCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC
T ss_pred             CCCccccccccccCCCCccEEEEEEEHHHCc
Confidence            985           78899999999998873

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.80  E-value=6.9e-20  Score=123.65  Aligned_cols=91  Identities=14%  Similarity=0.195  Sum_probs=76.1

Q ss_pred             eeEEEEEEEeeeeecccCC-C-----------CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC
Q psy12820         56 TRVKVLLRVLAARHLTRSG-R-----------CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE  123 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~-~-----------~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~  123 (156)
                      ....|+|+|++|++|+..+ .           +.+||||++.+.     .....+|++++++ +||+|||+|.|.+..+ 
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~-----~~~~~~T~~~~~t-~nP~WnE~f~f~v~~~-   76 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD-----DSRIGQTATKQKT-NSPAWHDEFVTDVCNG-   76 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET-----TEEEEECCCCSSC-SSCEEEEEEEEEEEEE-
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEEC-----CeEeeeeeEECCC-cCCccCCEEEEEecCC-
Confidence            3578999999999998764 2           238999999973     2225688888887 9999999999998764 


Q ss_pred             ccEEEEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820        124 MALLRFVCQDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       124 ~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                       ..|.|+|||++..+++++||++.+++.++.
T Consensus        77 -~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~  106 (136)
T 1gmi_A           77 -RKIELAVFHDAPIGYDDFVANCTIQFEELL  106 (136)
T ss_dssp             -CEEEEEEEECCSSSSCEEEEEEEEEHHHHT
T ss_pred             -CEEEEEEEeCCCCCCCCEEEEEEEEHHHhc
Confidence             789999999999999999999999987764

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.80  E-value=6.2e-20  Score=123.31  Aligned_cols=92  Identities=27%  Similarity=0.429  Sum_probs=80.2

Q ss_pred             eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec
Q psy12820         56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE  134 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~  134 (156)
                      ....|+|+|++|++|+..+ .+.+||||++.+.+     . +.+|++++++ +||.|||+|.|.+..+ ...|.|+|||+
T Consensus        11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~-~~kT~~~~~t-~nP~wne~f~f~~~~~-~~~l~i~V~d~   82 (133)
T 2ep6_A           11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-----D-RLQTHTVYKN-LNPEWNKVFTFPIKDI-HDVLEVTVFDE   82 (133)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-----E-EEECCCCSSC-SSCCCCEEEEEEESCT-TCEEEEEEEEE
T ss_pred             CceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC-----E-EEEeeeecCC-CCCccccEEEEEecCC-CCEEEEEEEEC
Confidence            4578999999999999876 67899999999843     2 7899999987 9999999999999864 36899999999


Q ss_pred             CCCCCCceEEEEEEECCCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      +..+++++||++.+++.++..
T Consensus        83 d~~~~~~~lG~~~i~l~~l~~  103 (133)
T 2ep6_A           83 DGDKPPDFLGKVAIPLLSIRD  103 (133)
T ss_dssp             ETTEEEEECCBCEEEGGGCCS
T ss_pred             CCCCCCCeeEEEEEEHHHccC
Confidence            999889999999999988753

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=1.4e-19  Score=123.46  Aligned_cols=93  Identities=22%  Similarity=0.336  Sum_probs=78.1

Q ss_pred             EEEEEEEeeeeecccC-C-------CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEE
Q psy12820         58 VKVLLRVLAARHLTRS-G-------RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALL  127 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~-~-------~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l  127 (156)
                      ..|.|+|++|++|+.. +       .+.+||||++.+...  +.. +++|++++++ +||+|||+|.|.+...++  ..|
T Consensus        26 ~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~--~~~-~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~L  101 (147)
T 2enp_A           26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD--QKN-SKQTGVKRKT-QKPVFEERYTFEIPFLEAQRRTL  101 (147)
T ss_dssp             TEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETC--CSS-CEECCCCCSC-SSCCCCBCCEECCCHHHHHHSEE
T ss_pred             CEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeC--CCc-ceEeecccCC-CCCeEeeeEEEEeChHHhccCEE
Confidence            4799999999999974 2       247999999998742  223 7899999987 999999999998765443  389


Q ss_pred             EEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820        128 RFVCQDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       128 ~~~V~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      .|+|||++.++++++||++.++|.++.
T Consensus       102 ~~~V~d~d~~~~~~~iG~~~i~l~~l~  128 (147)
T 2enp_A          102 LLTVVDFDKFSRHCVIGKVSVPLCEVD  128 (147)
T ss_dssp             EEEEECCSTTCCSCCCEEEEEETTTSC
T ss_pred             EEEEEECCCCcCCcEEEEEEEechhcC
Confidence            999999999999999999999999874

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.80  E-value=4.3e-19  Score=120.08  Aligned_cols=93  Identities=15%  Similarity=0.228  Sum_probs=77.3

Q ss_pred             eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEec
Q psy12820         57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDE  134 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d~  134 (156)
                      ...|+|+|++|+.  ....+.+||||++.+...  +...+++|++++++ +||+|||+|.|.+...++  ..|.|.|||+
T Consensus        25 ~~~L~V~v~~a~~--~d~~g~sDPyv~v~l~~~--~~~~~~kT~v~~~t-lnP~wnE~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T 1wfm_A           25 KAELFVTRLEAVT--SNHDGGCDCYVQGSVANR--TGSVEAQTALKKRQ-LHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTEEEEEEEEEEC--CCCSSCCCEEEEEEEEET--TEEEEEECCCCCCC-SSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCEEEEEEEEEEc--CCCCCCcceEEEEEEEcC--CCcccEecccCcCC-CCCcCCceEEEEecHHHcCCCEEEEEEEEC
Confidence            3579999999993  233678999999998642  12236899999988 999999999999876654  4899999999


Q ss_pred             CCCCCCceEEEEEEECCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~  154 (156)
                      |.++++++||++.++|.++.
T Consensus       100 d~~~~dd~lG~~~i~l~~l~  119 (138)
T 1wfm_A          100 DRFSRHSVAGELRLGLDGTS  119 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSS
T ss_pred             CCCCCCcEEEEEEEEccccc
Confidence            99999999999999999874

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.79  E-value=3e-19  Score=125.37  Aligned_cols=89  Identities=20%  Similarity=0.397  Sum_probs=75.8

Q ss_pred             eeEEEEEEEeeeeecc-cCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec
Q psy12820         56 TRVKVLLRVLAARHLT-RSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE  134 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~-~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~  134 (156)
                      ...+|.|+|++|++|+ ..+.+.+||||+|.+.+     . ++||++++++ +||+|||+|.|.+.  +...|.|+|||+
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~-----~-~~kT~v~~~t-lnP~Wne~f~f~v~--~~~~L~~~V~D~  104 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-----Q-SKKTEKCNNT-NSPKWKQPLTVIVT--PVSKLHFRVWSH  104 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-----E-EEECCCCSSC-SSCEEEEEEEEEEC--TTCEEEEEEEEC
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECC-----E-EeEccccCCC-CCCeECCEEEEEeC--CCCEEEEEEEEC
Confidence            3568999999999998 54555699999999842     3 8899999987 99999999999885  367899999999


Q ss_pred             CCCCCCceEEEEEEECCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l  153 (156)
                      +.++++++||++.+++.++
T Consensus       105 d~~~~dd~lG~~~i~l~~l  123 (173)
T 2nq3_A          105 QTLKSDVLLGTAALDIYET  123 (173)
T ss_dssp             CSSSCCEEEEEEEEEHHHH
T ss_pred             CCCCCCceEEEEEEEHHHh
Confidence            9999999999999998765

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.79  E-value=1.2e-19  Score=122.83  Aligned_cols=95  Identities=25%  Similarity=0.461  Sum_probs=78.9

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCCc--cEEEEEEEe
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPEM--ALLRFVCQD  133 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~~--~~l~~~V~d  133 (156)
                      ..|.|+|++|++|+..+ .+.+||||++.+.+...... +++|++++++ +||+|||+|.|. +...++  ..|.|+|||
T Consensus        21 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~-~~kT~~~~~t-~nP~wne~f~f~~~~~~~~~~~~l~i~V~d   98 (141)
T 1v27_A           21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKN-KRRTKTVKKT-LEPKWNQTFIYSPVHRREFRERMLEITLWD   98 (141)
T ss_dssp             TEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSS-CCBCCCCSSC-SSCCCCCCCEECSCCTTGGGTCEEEEEEEE
T ss_pred             CEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCc-ceeCccccCC-CCCccccEEEEccCCHHHhcCCEEEEEEEE
Confidence            57999999999998876 67899999999865322233 7899999997 999999999998 443332  589999999


Q ss_pred             cCCCCC--CceEEEEEEECCCCC
Q psy12820        134 EDMFGD--SNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~--~~~iG~~~i~l~~l~  154 (156)
                      ++..++  +++||++.+++.++.
T Consensus        99 ~d~~~~~~~~~lG~~~i~l~~l~  121 (141)
T 1v27_A           99 QARVREEESEFLGEILIELETAL  121 (141)
T ss_dssp             BCSSSSCCBCCCEEEEEEGGGCC
T ss_pred             CCCCcCCCCceEEEEEEEccccC
Confidence            999886  899999999998864

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.79  E-value=1.7e-19  Score=126.24  Aligned_cols=95  Identities=21%  Similarity=0.298  Sum_probs=79.7

Q ss_pred             eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEE-e
Q psy12820         57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQ-D  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~-d  133 (156)
                      ...|.|+|++|++|+..+  .+.+||||++.+.+... ...++||++++++ +||+|||+|.|.+.. +...|.|+|| |
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~-~~~~~kT~v~~~t-~nP~wne~f~f~v~~-~~~~L~~~V~~d  105 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGA-CIAKKKTRIARKT-LDPLYQQSLVFDESP-QGKVLQVIVWGD  105 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTE-EEEEEECCCCCSC-SSCEEEEEEECSSCC-TTEEEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCc-cccceeCccCCCC-CCCCCCcEEEEEecC-CCCEEEEEEEEc
Confidence            457999999999999876  47899999999875321 1137899999988 999999999999754 3478999999 9


Q ss_pred             cCCCCCCceEEEEEEECCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ++..+++++||++.++++++.
T Consensus       106 ~d~~~~d~~iG~~~i~l~~l~  126 (171)
T 2q3x_A          106 YGRMDHKCFMGVAQILLEELD  126 (171)
T ss_dssp             CSTTCSSEEEEEEEECGGGSC
T ss_pred             CCCCCCCCEEEEEEEEHHHcc
Confidence            999999999999999998875

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.77  E-value=8e-19  Score=117.92  Aligned_cols=86  Identities=15%  Similarity=0.255  Sum_probs=70.5

Q ss_pred             eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC
Q psy12820         57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM  136 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~  136 (156)
                      ...|.|+|++|++++  ..+.+||||++. .      . +.+|+++++++.||+|||+|.|.+..++ ..|.|+|||+| 
T Consensus         4 ~~~L~V~V~~A~~l~--~~g~~DPYv~v~-~------~-~~kt~~~~~~t~nP~WnE~f~f~v~~~~-~~L~~~V~D~d-   71 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDG--AQEKFNTYVTLK-V------Q-NVKSTTIAVRGSQPSWEQDFMFEINRLD-LGLTVEVWNKG-   71 (131)
T ss_dssp             CEEEEEEEEEEECSS--CGGGCEEEEEEE-E------T-TEEEECCCEESSSCEEEEEEEEEECCCS-SEEEEEEEECC-
T ss_pred             ceEEEEEEEEeECCC--CCCCcCeEEEEE-e------c-CEEEeEecCCCCCceECCEEEEEEeCCC-CeEEEEEEECC-
Confidence            468999999999885  357889999998 1      1 4456666543499999999999998654 47999999999 


Q ss_pred             CCCCceEEEEEEECCCCC
Q psy12820        137 FGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       137 ~~~~~~iG~~~i~l~~l~  154 (156)
                      .++|++||++.++|+++.
T Consensus        72 ~~~dd~iG~~~i~l~~l~   89 (131)
T 2cjt_A           72 LIWDTMVGTVWIPLRTIR   89 (131)
T ss_dssp             SSCEEEEEEEEEEGGGSC
T ss_pred             CCCCCeEEEEEEEHHHhh
Confidence            888999999999998874

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=1.1e-19  Score=123.19  Aligned_cols=97  Identities=24%  Similarity=0.403  Sum_probs=79.1

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCC--------CceEEeEEecCCCCCCeeCceEEEE-EeCC--Cc
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDT--------GLKLTTKTVSDNGFNPTWNESCEFT-VHNP--EM  124 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~--------~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~--~~  124 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+.+.....        ..++||++++++ +||+|||+|.|. +...  ..
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~~v~~~~l~~   95 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS-LNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHH-HSCEEEEEEEECSCCHHHHTT
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCC-CCCCCCCEEEECCcCHHHccC
Confidence            347999999999999876 6789999999986532110        125789998887 999999999997 5532  23


Q ss_pred             cEEEEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820        125 ALLRFVCQDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       125 ~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ..|.|+|||++..+++++||++.++++++.
T Consensus        96 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~  125 (142)
T 1rh8_A           96 KTLEVTVWDYDRFSSNDFLGEVLIDLSSTS  125 (142)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEETTSCG
T ss_pred             CEEEEEEEECCCCCCCceEEEEEEeccccc
Confidence            589999999999999999999999999874

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=1.1e-17  Score=125.21  Aligned_cols=94  Identities=28%  Similarity=0.417  Sum_probs=80.4

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+.+.  +.. +++|++++++ +||+|||+|.|.+...+.  ..|.|+|||
T Consensus        18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~--~~~-~~~T~~~~~~-~nP~wne~f~f~v~~~~~~~~~l~~~V~d   93 (284)
T 2r83_A           18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD--KKK-KFETKVHRKT-LNPVFNEQFTFKVPYSELAGKTLVMAVYD   93 (284)
T ss_dssp             TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETC--TTS-CEECCCCCSC-SSCEEEEEEEECCCGGGCTTCEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcC--CCc-eEeCCcccCC-CCCeeCceEEEEechHHhCcCEEEEEEEE
Confidence            357999999999999876 678999999998642  223 7889999988 999999999999876543  589999999


Q ss_pred             cCCCCCCceEEEEEEECCCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ++.++++++||++.+++.++.
T Consensus        94 ~d~~~~~~~lG~~~i~l~~l~  114 (284)
T 2r83_A           94 FDRFSKHDIIGEFKVPMNTVD  114 (284)
T ss_dssp             CCSSSCCCEEEEEEEEGGGCC
T ss_pred             CCCCCCCceeEEEEEcchhcc
Confidence            999999999999999998874

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.72  E-value=1.3e-17  Score=116.38  Aligned_cols=86  Identities=15%  Similarity=0.252  Sum_probs=70.5

Q ss_pred             eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC
Q psy12820         57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM  136 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~  136 (156)
                      ...|.|+|++|++++  ..+.+||||++. .      . +.||+++++++.||+|||+|.|.+...+ ..|.|+|||+| 
T Consensus        13 ~~~L~V~V~~A~~l~--~~g~~DPYV~v~-~------~-~~kt~~~~~~t~nP~WnE~f~f~v~~~~-~~L~~~V~D~d-   80 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG--AQEKFNTYVTLK-V------Q-NVESTTIAVRGSQPSWEQDFMFEINRLD-LGLTVEVWNKG-   80 (167)
T ss_dssp             CCEEEEEEEEEECSS--CGGGCEEEEEEE-E------T-TEEEECCCEESSSCEEEEEEEEECCCTT-SEEEEEEEECC-
T ss_pred             eEEEEEEEEEEECCC--CCCCCCeEEEEE-e------c-ceEEEEecCCCCCCCCCCEEEEEeeCCC-CEEEEEEEECC-
Confidence            358999999999884  357789999998 1      1 4567666543499999999999988654 47999999999 


Q ss_pred             CCCCceEEEEEEECCCCC
Q psy12820        137 FGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       137 ~~~~~~iG~~~i~l~~l~  154 (156)
                      .++|++||++.++|.++.
T Consensus        81 ~~~dd~iG~~~i~L~~l~   98 (167)
T 2cjs_A           81 LIWDTMVGTVWIPLRTIR   98 (167)
T ss_dssp             SSCCEEEEEEEEEGGGSC
T ss_pred             CCCCceEEEEEEEHHHhc
Confidence            888999999999998874

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.72  E-value=3e-17  Score=122.93  Aligned_cols=95  Identities=21%  Similarity=0.310  Sum_probs=79.8

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d  133 (156)
                      ...|.|.|++|++|+..+ .+.+||||++.+.+.+. ...+++|++++++ +||+|||+|.|.+..+++.  .|.|+|||
T Consensus       149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~-~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~l~i~V~d  226 (284)
T 2r83_A          149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK-RLKKKKTTIKKNT-LNPYYNESFSFEVPFEQIQKVQVVVTVLD  226 (284)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTE-EEEEEECCCCCSC-SSCEEEEEEEEECCTTTGGGEEEEEEEEE
T ss_pred             CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCc-EeeeeccceecCC-CCCEEceeEEEeCCHHHhCceEEEEEEEe
Confidence            347999999999998876 67899999999864321 1236789999888 9999999999998876653  79999999


Q ss_pred             cCCCCCCceEEEEEEECCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l  153 (156)
                      ++..+++++||++.++++++
T Consensus       227 ~d~~~~~~~iG~~~i~l~~~  246 (284)
T 2r83_A          227 YDKIGKNDAIGKVFVGYNST  246 (284)
T ss_dssp             CCSSSCCCEEEEEEEETTCC
T ss_pred             CCCCCCCcEEEEEEECCCCC
Confidence            99999999999999999764

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.71  E-value=1.1e-17  Score=139.11  Aligned_cols=107  Identities=24%  Similarity=0.391  Sum_probs=84.1

Q ss_pred             CCCCCCCCCCCceeeEEEEEEEeeeeeccc---CC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE
Q psy12820         43 SYDPYDPTSLVGVTRVKVLLRVLAARHLTR---SG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT  118 (156)
Q Consensus        43 ~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~---~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~  118 (156)
                      .|||.....++......|+|+|++|++|+.   .+ .+.+||||++++.+.   ...++||++++++ +||+|||+|.|.
T Consensus         3 ~fdP~~~~~ve~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~---~~~k~kTkvik~t-lNPvWNEtF~F~   78 (749)
T 1cjy_A            3 FIDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT---PDSRKRTRHFNND-INPVWNETFEFI   78 (749)
T ss_dssp             ----------CCCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTS---TTCCEECCCCTTC-SSCEEEEEEEEE
T ss_pred             CCCCCccccccCCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecC---CCCeEecceEcCC-CCCeeeeEEEEE
Confidence            366665544555567899999999999987   44 578999999998642   2238899999987 999999999999


Q ss_pred             EeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820        119 VHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       119 v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      +..+....|.|+|||+|..+ +++||++.+++.+|.
T Consensus        79 v~~~~~~~L~~~V~D~D~~~-ddfIG~v~I~L~~L~  113 (749)
T 1cjy_A           79 LDPNQENVLEITLMDANYVM-DETLGTATFTVSSMK  113 (749)
T ss_dssp             ECTTSCCBCEEEEEECCSSS-CEEEEEECCBSTTSC
T ss_pred             ecCCCCCEEEEEEEECCCCC-CceeEEEEEEHHHcC
Confidence            99877789999999999998 999999999999875

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.70  E-value=1.5e-16  Score=128.57  Aligned_cols=117  Identities=18%  Similarity=0.209  Sum_probs=90.5

Q ss_pred             cccccCCceeEEecCCcccCCCCCCCCCCCCCceeeEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEE
Q psy12820         22 AKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKT  101 (156)
Q Consensus        22 ~~F~~ng~~GyvlKP~~l~~~~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~  101 (156)
                      +.-...+.|-.+.+|-.......=|      .......|+|+|++|++|+....+.+||||+|.+.+     . +.||++
T Consensus       364 ~~~l~g~~C~C~C~~~~~t~~~~C~------~~~~~~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~-----~-~~kTkv  431 (540)
T 3nsj_A          364 QHKSSHDSCQCECQDSKVTNQDCCP------RQRGLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGG-----Q-EFRTGV  431 (540)
T ss_dssp             EEECSSCTTCEEESCTTTBCGGGCB------SSTTEEEEEEEEEEEESCCCSSCSCCCEEEEEEETT-----E-EEECCC
T ss_pred             CccCCCCceEeeCCCCCCccccccc------ccCcccEEEEEEEEccCCCcccCCCcCeEEEEEECC-----E-eeeeee
Confidence            4444556688888885333221111      112357899999999999883377899999999842     3 799999


Q ss_pred             ecCCCCCCeeCceEEEEEe-CCCccEEEEEEEecCCCCCCceEEEEEEECC
Q psy12820        102 VSDNGFNPTWNESCEFTVH-NPEMALLRFVCQDEDMFGDSNFIGQATYPVY  151 (156)
Q Consensus       102 ~~~~~~nP~w~e~f~f~v~-~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~  151 (156)
                      ++++ +||+|||+|.|.+. .+....|+|+|||+|..++||+||++.++|.
T Consensus       432 ik~t-lNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~  481 (540)
T 3nsj_A          432 VWNN-NNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH  481 (540)
T ss_dssp             BCSC-SSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC
T ss_pred             ecCC-CCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee
Confidence            9998 99999999999864 4456789999999999999999999999986

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.69  E-value=4.9e-17  Score=109.30  Aligned_cols=87  Identities=9%  Similarity=0.143  Sum_probs=75.5

Q ss_pred             eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEec
Q psy12820         57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDE  134 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d~  134 (156)
                      -+.|+|.|.+|.+|+    +..|||+++.+.+.      +++|+++++++.||+|||.|+|++..+..  .+|.+.|+|+
T Consensus        20 ~msL~V~l~~a~~Lp----g~~Dp~akv~FRg~------k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~   89 (144)
T 3l9b_A           20 HMALIVHLKTVSELR----GRADRIAKVTFRGQ------SFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNY   89 (144)
T ss_dssp             CEEEEEEEEEEESCC----SCEEEEEEEEETTE------EEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEE
T ss_pred             cEEEEEEEEEecCCC----CCCCCeEEEEEecc------ceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEEC
Confidence            467999999999998    57899999998542      89999998544999999999999885443  4999999999


Q ss_pred             CCCCCCceEEEEEEECCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l  153 (156)
                      +.++++++||++.++|.++
T Consensus        90 ~~v~~nrlIG~~~i~Lq~l  108 (144)
T 3l9b_A           90 SKVFSNKLIGTFRMVLQKV  108 (144)
T ss_dssp             CTTSCCEEEEEEEEESHHH
T ss_pred             ccccCCCEEEEEEEEhHHh
Confidence            9999999999999998764

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.69  E-value=5.4e-17  Score=122.50  Aligned_cols=89  Identities=29%  Similarity=0.461  Sum_probs=76.0

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d  133 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+..  .+.. +++|++++++ +||+|||+|.|.+...++.  .|.|+|||
T Consensus        19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~--~~~~-~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~L~~~V~d   94 (296)
T 1dqv_A           19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLP--DRKK-KFQTKVHRKT-LNPIFNETFQFSVPLAELAQRKLHFSVYD   94 (296)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTT--STTS-CEECCCCCSC-SSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred             CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEc--CCCe-eEeCCccCCC-CCCcEeeEEEEEecHHHhcCCEEEEEEEE
Confidence            357999999999999876 67899999999752  2233 7899999988 9999999999998765543  89999999


Q ss_pred             cCCCCCCceEEEEEEE
Q psy12820        134 EDMFGDSNFIGQATYP  149 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~  149 (156)
                      +|.++++++||++.++
T Consensus        95 ~d~~~~~~~iG~~~i~  110 (296)
T 1dqv_A           95 FDRFSRHDLIGQVVLD  110 (296)
T ss_dssp             CCSSSCCCEEEEEECC
T ss_pred             cCCCCCCceEEEEEec
Confidence            9999999999999995

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.68  E-value=8.2e-17  Score=129.38  Aligned_cols=92  Identities=26%  Similarity=0.528  Sum_probs=80.5

Q ss_pred             eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec
Q psy12820         56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE  134 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~  134 (156)
                      ....|.|+|++|++|+..+ .+.+||||++.+.     .. +++|++++++ +||+|||+|.|.+..+....|.|+|||+
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~-----~~-~~~T~~~~~t-~nP~w~e~f~f~~~~~~~~~l~~~v~d~  457 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMG-----SQ-SYTTRTIQDT-LNPKWNFNCQFFIKDLYQDVLCLTLFDR  457 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET-----TE-EEECCCCSSC-SSCEEEEEEEEEESCTTTCEEEEEEEEC
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEEC-----Ce-eccCCccCCC-CCCccCceEEEEecCCCCCEEEEEEEeC
Confidence            3468999999999998776 7789999999973     23 7899999988 9999999999999877777899999999


Q ss_pred             CCCCCCceEEEEEEECCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~  154 (156)
                      |..+++++||++.++++++.
T Consensus       458 d~~~~~d~lG~~~~~l~~l~  477 (510)
T 3jzy_A          458 DQFSPDDFLGRTEIPVAKIR  477 (510)
T ss_dssp             CSSSSCCEEEEEEEEHHHHH
T ss_pred             CCCCCCCceEEEEEEHHHhc
Confidence            99999999999999987653

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.65  E-value=3.3e-17  Score=123.70  Aligned_cols=95  Identities=20%  Similarity=0.272  Sum_probs=79.6

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ...|+|.|++|++|+..+ .+.+||||++++...+ ....++||++++++ +||+|||+|.|.+..+++  ..|.|+|||
T Consensus       151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~-~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~L~i~V~d  228 (296)
T 1dqv_A          151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEG-RRLKKRKTSIKKNT-LNPTYNEALVFDVAPESVENVGLSIAVVD  228 (296)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTC-CTTSCEECCCCCSC-SSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred             cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCC-cCccceecceecCC-CCCeECceEEEEcCHHHccCcEEEEEEEe
Confidence            357999999999998876 6778999999986422 22337899999988 999999999999876543  379999999


Q ss_pred             cCCCCCCceEEEEEEECCCC
Q psy12820        134 EDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~~l  153 (156)
                      ++..+++++||++.+++.++
T Consensus       229 ~d~~~~~~~iG~~~i~l~~~  248 (296)
T 1dqv_A          229 YDCIGHNEVIGVCRVGPEAA  248 (296)
T ss_dssp             CCSSSCCEEEEECCCSSCTT
T ss_pred             CCCCCCCceEEEEEECCccC
Confidence            99999999999999998865

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.54  E-value=9.9e-15  Score=121.14  Aligned_cols=96  Identities=22%  Similarity=0.421  Sum_probs=81.9

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc-cEEEEEEEec
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM-ALLRFVCQDE  134 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~-~~l~~~V~d~  134 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+.+.+.... +++|++++++ +||+|||+|.|.+...+. ..|.|+|||+
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~-k~kT~v~~~t-lnP~wne~f~f~~~~~~~~~~L~v~v~d~  248 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSES-KQKTKTIKSS-LNPEWNETFRFQLKESDKDRRLSVEIWDW  248 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCS-CEECCCCSSC-SSCEEEEEEEEECCSTTTTCEEEEEEEEC
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccc-cccccccccc-cCCCccceeeeecccCCccceeeeEEeec
Confidence            457899999999998876 77899999999876544344 8899999998 999999999999875544 3699999999


Q ss_pred             CCCCCCceEEEEEEECCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~  154 (156)
                      |..+++++||++.++++++.
T Consensus       249 d~~~~dd~iG~~~i~l~~l~  268 (674)
T 3pfq_A          249 DLTSRNDFMGSLSFGISELQ  268 (674)
T ss_dssp             CSSSCCEECCBCCCBTTHHH
T ss_pred             ccccccccccccccchhhhc
Confidence            99999999999999988753

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.41  E-value=1.6e-14  Score=115.70  Aligned_cols=89  Identities=21%  Similarity=0.245  Sum_probs=9.2

Q ss_pred             eeEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCC--CCCCeeCceEEEEEeCCCccEEEEEEEe
Q psy12820         56 TRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDN--GFNPTWNESCEFTVHNPEMALLRFVCQD  133 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~--~~nP~w~e~f~f~v~~~~~~~l~~~V~d  133 (156)
                      ....|+|+|++|++|+..+    ||||++.+.+    .. ..||++++++  |+||+|||+|.|.+... ...|.+.|||
T Consensus         9 ~~~~L~V~VieAk~L~~~d----dpYv~v~l~~----~~-~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d   78 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK----RYYCELCLDD----ML-YARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYR   78 (483)
T ss_dssp             EEECC------------------------------------------------------CCEECC---------------
T ss_pred             eccEEEEEEEEcCCcCCCC----CCeEEEEECC----eE-EeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEe
Confidence            4568999999999998765    8999998742    22 5688888765  58999999999986533 5789999999


Q ss_pred             c-C---CCCCCceEEEEEEECCCCC
Q psy12820        134 E-D---MFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~-~---~~~~~~~iG~~~i~l~~l~  154 (156)
                      + |   ..+++++||.+.++++++.
T Consensus        79 ~~d~~~~~~~d~~lG~v~i~l~~l~  103 (483)
T 3bxj_A           79 DSDKKRKKDKAGYVGLVTVPVATLA  103 (483)
T ss_dssp             -------------------------
T ss_pred             cCCccccCCCCceEEEEEEEHHHhc
Confidence            4 4   3678899999999998875

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.53  E-value=2.6e-07  Score=61.20  Aligned_cols=88  Identities=9%  Similarity=0.168  Sum_probs=59.9

Q ss_pred             EEEEEEEeeeeecccC--CCCCCCCEEEEEEecCCCCCCceEEe-EEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRS--GRCTTSPFVEVEVLGADYDTGLKLTT-KTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~--~~~~~dpyv~v~l~~~~~~~~~~~kT-~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~  134 (156)
                      ..|+|.+.+..--+..  .....||||.|.+...-  .....+| .+.+++ ..|+|||+|.-.+..  ...|.+.|++.
T Consensus        10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~--~te~gqtl~~KkkT-~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~   84 (138)
T 2enj_A           10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYV--ESENGQMYIQKKPT-MYPPWDSTFDAHINK--GRVMQIIVKGK   84 (138)
T ss_dssp             CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEE--EETTEEEEEEEEEE-ECCCSSSEEEECCCS--SCEEEEEEECS
T ss_pred             cceEEEeeccccCCCCCcccccCCceEEEEeeeee--eccCceeecccCCC-CCccccceEeeeEEC--CeEEEEEEEcC
Confidence            3577777666543322  34568999999874210  0012455 455556 899999988876664  46899999965


Q ss_pred             CCCCCCceEEEEEEECCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ..    +|++.+++++.+|.
T Consensus        85 a~----~fVAn~tV~~edL~  100 (138)
T 2enj_A           85 NV----DLISETTVELYSLA  100 (138)
T ss_dssp             SC----SCCEEEEEESHHHH
T ss_pred             CC----CeeeEEEEEHHHHH
Confidence            43    89999999998764

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.52  E-value=3.8e-07  Score=59.64  Aligned_cols=87  Identities=13%  Similarity=0.101  Sum_probs=58.1

Q ss_pred             EEEEEEeeeeecccC-CCCCCCCEEEEEEecCCCCCCceEEe-EEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC
Q psy12820         59 KVLLRVLAARHLTRS-GRCTTSPFVEVEVLGADYDTGLKLTT-KTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM  136 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~-~~~~~dpyv~v~l~~~~~~~~~~~kT-~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~  136 (156)
                      -|+|.+.++.--+.. .....|||+.|.+...-. .. ..+| .+.+++ ..|+|||+|.-.+..  ...|.+.|++...
T Consensus         7 flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~-~e-~g~t~~~K~kT-~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~   81 (126)
T 1yrk_A            7 FLRIAFNSYELGSLQAEDEANQPFCAVKMKEALS-TE-RGKTLVQKKPT-MYPEWKSTFDAHIYE--GRVIQIVLMRAAE   81 (126)
T ss_dssp             EEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEE-ET-TEEEEECCSCC-BCCCTTCEEEEECCT--TCEEEEEEEEETT
T ss_pred             cEEeeeccccccccCCccccCCceEEEEeeeeEE-cc-cceeecccCCC-CCcCccceEEeeeeC--CEEEEEEEEcCCC
Confidence            577777665532211 234689999998742100 00 2244 455555 999999998877665  4688999997653


Q ss_pred             CCCCceEEEEEEECCCCC
Q psy12820        137 FGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       137 ~~~~~~iG~~~i~l~~l~  154 (156)
                          +|++.+++++.+|.
T Consensus        82 ----~fvAn~tV~~edL~   95 (126)
T 1yrk_A           82 ----EPVSEVTVGVSVLA   95 (126)
T ss_dssp             ----EEEEEEEEEHHHHH
T ss_pred             ----CeeeEEEEEHHHHH
Confidence                89999999987764

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=96.92  E-value=0.0071  Score=52.60  Aligned_cols=93  Identities=15%  Similarity=0.167  Sum_probs=62.6

Q ss_pred             EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEe---CCCccEEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVH---NPEMALLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~---~~~~~~l~~~V~d~  134 (156)
                      ..+.|+|+++.++........+-||++.+......-....+|+.+.  +.+|.|||-+.|++.   .|..+.|.|+||+.
T Consensus       355 ~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~--~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~  432 (1091)
T 3hhm_A          355 SALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLNYDIYIPDLPRAARLCLSICSV  432 (1091)
T ss_dssp             SEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC--TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCC
T ss_pred             CCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC--CCCCCCCeeEEecCccccCChhcEEEEEEEEe
Confidence            4789999999887644444567899999875332222234454333  257889999999986   46667999999986


Q ss_pred             CCC----CCCceEEEEEEECCC
Q psy12820        135 DMF----GDSNFIGQATYPVYT  152 (156)
Q Consensus       135 ~~~----~~~~~iG~~~i~l~~  152 (156)
                      ...    ..+..||++.++|-+
T Consensus       433 ~~~~~~~~~~~~lg~~n~~lfd  454 (1091)
T 3hhm_A          433 KGRKGAKEEHCPLAWGNINLFD  454 (1091)
T ss_dssp             CCCC-------CCEEEEEESBC
T ss_pred             cCccCcccccceeEEeeeeeEc
Confidence            432    123479999999854

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=96.85  E-value=0.0076  Score=51.85  Aligned_cols=92  Identities=15%  Similarity=0.184  Sum_probs=60.6

Q ss_pred             EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEe---CCCccEEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVH---NPEMALLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~---~~~~~~l~~~V~d~  134 (156)
                      ..+.|+|.++.++...  +..+-||++.+...+..-.....|+.+.-. .+|.|||-+.|++.   .|..+.|.|+||+.
T Consensus       217 ~~f~i~i~~~~~~~~~--~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~-~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~  293 (940)
T 2wxf_A          217 QPFSIELIEGRKVNAD--ERMKLVVQAGLFHGNEMLCKTVSSSEVNVC-SEPVWKQRLEFDISVCDLPRMARLCFALYAV  293 (940)
T ss_dssp             SEEEEEEEEEECCCC-----CEEEEEEEEEETTEESSCCEECCCEESC-SSCEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred             CceEEEEEEecccCCC--CCceEEEEEEEEECCEEccCceecccccCC-CCcccceEEEcccccccCCcccEEEEEEEEe
Confidence            4789999999988643  345678988876432111113344444434 68999999999876   45567999999985


Q ss_pred             CCC--C----------CCceEEEEEEECCC
Q psy12820        135 DMF--G----------DSNFIGQATYPVYT  152 (156)
Q Consensus       135 ~~~--~----------~~~~iG~~~i~l~~  152 (156)
                      ...  +          ....||++.+++-+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd  323 (940)
T 2wxf_A          294 VEKAKKARSTKKKSKKADCPIAWANLMLFD  323 (940)
T ss_dssp             C----------------CEEEEEEEEESBC
T ss_pred             cCCccCccccccccccccceEEEEeeeEEC
Confidence            321  1          23489999998854

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=96.75  E-value=0.062  Score=38.41  Aligned_cols=56  Identities=13%  Similarity=0.206  Sum_probs=41.8

Q ss_pred             ceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEecCCC----CCCceEEEEEEECC
Q psy12820         95 LKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDEDMF----GDSNFIGQATYPVY  151 (156)
Q Consensus        95 ~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d~~~~----~~~~~iG~~~i~l~  151 (156)
                      ..++|.+...+ -+|.|+|++.+.+.....  +-|.|++++....    ..+..+|-+.+||-
T Consensus        77 se~~S~V~YHn-k~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           77 SEYKSVIYYQV-KQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             SCEECCCCTTC-SSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eeEEEEEEEcC-CCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            46788888877 899999999998885444  5888998864321    22357999999974

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=95.34  E-value=0.014  Score=50.98  Aligned_cols=92  Identities=16%  Similarity=0.154  Sum_probs=57.3

Q ss_pred             EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~~~V~d~  134 (156)
                      ..+.|+|.++.++...  +..+-||++.+...+..-.....|+.+.-. .+|.|||-+.|++..   |..+.|.|+||+.
T Consensus       353 ~~f~i~i~~~~~~~~~--~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~-~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~  429 (1092)
T 2y3a_A          353 NPFQITLVKGNKLNTE--ETVKVHVRAGLFHGTELLCKTVVSSEISGK-NDHIWNEQLEFDINICDLPRMARLCFAVYAV  429 (1092)
T ss_dssp             SEEEEEECCCCCCCCC--SSCCCCCBCCEEETTEESSCCCBCCCCCSS-SCCCCCEEEEEEEESSSCCTTCEEEEECCCC
T ss_pred             CCEEEEEEEeccCCCC--CCceEEEEEEEEECCEEccCceecccccCC-CCCccceeEEeCCccccCChhcEEEEEEEEe
Confidence            4788999999887643  345778887765322111112334444333 689999999998774   4456999999985


Q ss_pred             CCC----------------------CCCceEEEEEEECCC
Q psy12820        135 DMF----------------------GDSNFIGQATYPVYT  152 (156)
Q Consensus       135 ~~~----------------------~~~~~iG~~~i~l~~  152 (156)
                      ...                      +....||++.+++-+
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd  469 (1092)
T 2y3a_A          430 LDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFD  469 (1092)
T ss_dssp             ------------------------------CCEEEEESBC
T ss_pred             cCccccccccccccccccccccccccccceeEEEeeeeEC
Confidence            211                      112378999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-18
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	1e-15
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	6e-12
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-11
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	1e-10
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-10
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-10
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	4e-09
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	6e-09
d1qasa3	327	c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (P	2e-08
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-08
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	4e-08
d2zkmx4	349	c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human	9e-08
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	3e-07
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	7e-07
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	4e-06
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	6e-06
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-04
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	6e-04
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	0.001

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.6 bits (180), Expect = 3e-18
 Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 4/100 (4%)

Query: 58  VKVLLRVLAARHLTRSGRCTTS---PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES 114
            ++ +R+++ + L +  +   S   P V VE+ G   DTG    T  +++NGFNP W+  
Sbjct: 4   ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTG-SRQTAVITNNGFNPRWDME 62

Query: 115 CEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNR 154
            EF V  P++AL+RF+ +D D    ++FIGQ+T P  + +
Sbjct: 63  FEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLK 102

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (163), Expect = 1e-15
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 62  LRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKT-VSDNGFNPTWNESC--EFT 118
           + V++ + L+     +   +VEVE+ G   D   +  TK   S N  NP W E       
Sbjct: 5   ITVISGQFLSER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEK 61

Query: 119 VHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
           +  PE+A LR    +E     + F+G    P+
Sbjct: 62  ILMPELASLRVAVMEE----GNKFLGHRIIPI 89

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.4 bits (138), Expect = 6e-12
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 39  MFSESYDPYDPTSLVGVTRVKVLLRVLAARHL-TRSGRCTTSPFVEVEVLGADYDTGLKL 97
           + S  Y           T   + + VL ARHL        + P+V+V +         K 
Sbjct: 5   LVSLCYQS---------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYH-AKKRISKK 54

Query: 98  TTKTVSDNGFNPTWNESCEFTVHNPEMAL--LRFVCQDEDMFGDSNFIGQATYP 149
            T        N  +NE   F +    +    + F+  D +    +  IG+    
Sbjct: 55  KTHVKKCT-PNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLG 107

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.9 bits (134), Expect = 2e-11
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 59  KVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
            +++ V  A++L        S P+V+++++        +  TKT+  +  NP WNE+  F
Sbjct: 16  VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQ-KTKTIKCS-LNPEWNETFRF 73

Query: 118 TVHNPEM-ALLRFVCQDEDMFGDSNFIGQATYPV 150
            +   +    L     D D+   ++F+G  ++ +
Sbjct: 74  QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI 107

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.1 bits (129), Expect = 1e-10
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 14/117 (11%)

Query: 39  MFSESYDPYDPTSLVGVTRVKVLLRVLAARHL-TRSGRCTTSPFVEVEVLGADYDTGLKL 97
           + S  Y            +  +++ ++   HL        + PFV++ +   D     K 
Sbjct: 5   LVSLMYST---------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKP-DMGKKAKH 54

Query: 98  TTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYPVYT 152
            T+       NP +NE   + + + ++A   L     D D+   +++IG     +  
Sbjct: 55  KTQIKKKT-LNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 110

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 2e-10
 Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 17/118 (14%)

Query: 39  MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
                +D             ++++ +L A+ L          P+V++  L    D     
Sbjct: 4   SIKLWFDK---------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDK--NK 52

Query: 98  TTKTVSDNGFNPTWNESCEFTVHNPEM---ALLRFVCQDEDMFGDSN--FIGQATYPV 150
                      P WN++  ++  +       +L     D+    +    F+G+    +
Sbjct: 53  RRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL 110

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.2 bits (127), Expect = 2e-10
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 16/115 (13%)

Query: 39  MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
            +S  YD             ++L+ ++ A  L       TS P+V+V +L    D   K 
Sbjct: 24  QYSLDYDF---------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP---DKKKKF 71

Query: 98  TTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYPV 150
            TK       NP +NE   F V   E+    L     D D F   + IG+   P+
Sbjct: 72  ETKVH-RKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 125

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 4e-09
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 59  KVLLRVLAARHLTRSGR----CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES 114
           K  + VL A  +T+        T  P+VE+ +                 +N  NP WNE+
Sbjct: 4   KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSR----KRTRHFNNDINPVWNET 59

Query: 115 CEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
            EF +   +  +L     D +   D   +G AT+ V
Sbjct: 60  FEFILDPNQENVLEITLMDANYVMD-ETLGTATFTV 94

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.8 bits (118), Expect = 6e-09
 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 9/108 (8%)

Query: 47  YDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNG 106
           Y PT+  G   V +L    A           + P+V++ ++        K TT  +  N 
Sbjct: 20  YVPTA--GKLTVVILE---AKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTT--IKKNT 72

Query: 107 FNPTWNESCEFTVHNPE--MALLRFVCQDEDMFGDSNFIGQATYPVYT 152
            NP +NES  F V   +     +     D D  G ++ IG+      +
Sbjct: 73  LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 120

>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 327

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Mammalian PLC
domain: Phospholipase C isozyme D1 (PLC-D1)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 15  KAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPT 50
             M V    F+ NGGCGY+L+PAF+     +++    T
Sbjct: 286 PEMDVYLGCFQDNGGCGYVLKPAFLRDPNTTFNSRALT 323

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 3e-08
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 18/117 (15%)

Query: 39  MFSESYDPYDPTSLVGVTRVKVLLRVLAARHL--TRSGRCTTSPFVEVEVLGADYDTGLK 96
            FS  Y+           R   ++ +  AR L        T+ P++++ +L    +   K
Sbjct: 12  FFSLEYNF---------ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILP---EKKHK 59

Query: 97  LTTKTVSDNGFNPTWNESCEFTVHNPEM---ALLRFVCQDEDMFGDSNFIGQATYPV 150
           + T+ +     +P ++E+  F            L F     D F   + IG+   P+
Sbjct: 60  VKTRVL-RKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL 115

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 47.4 bits (112), Expect = 4e-08
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 50  TSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNP 109
           +   G   V ++    +A+ L  +                         +      G  P
Sbjct: 6   SGPHGTLEVVLV----SAKGLEDADFLNNMDPYVQLTCRTQ-----DQKSNVAEGMGTTP 56

Query: 110 TWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
            WNE+  FTV       L+    D+D+  + + +G+AT P+
Sbjct: 57  EWNETFIFTVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPL 96

>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 349

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Mammalian PLC
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 9e-08
 Identities = 13/25 (52%), Positives = 14/25 (56%)

Query: 15  KAMQVNHAKFRMNGGCGYLLRPAFM 39
             MQ N A F  NG  GYLL+  FM
Sbjct: 322 LPMQQNMAVFEFNGQSGYLLKHEFM 346

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (105), Expect = 3e-07
 Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 19/122 (15%)

Query: 30  CGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGA 89
           CG +      F+  Y              ++++R+L A  L        S       L  
Sbjct: 4   CGRI-----SFALRYLY---------GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLL- 48

Query: 90  DYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQAT 147
             D   K  TK       NP +NE+ +F+V   E+A   L F   D D F   + IGQ  
Sbjct: 49  -PDRKKKFQTKVHRKT-LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVV 106

Query: 148 YP 149
             
Sbjct: 107 LD 108

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 7e-07
 Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 16/117 (13%)

Query: 36  PAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGL 95
           P   +   YD           + ++ +  L A      G C    +V+  V         
Sbjct: 13  PKLHYCLDYDC---------QKAELFVTRLEAVTSNHDGGC--DCYVQGSVANRTGSV-- 59

Query: 96  KLTTKTVSDNGFNPTWNESCEFTVHNPEMAL--LRFVCQDEDMFGDSNFIGQATYPV 150
           +  T        + TW E     +   E+    L    +  D F   +  G+    +
Sbjct: 60  EAQTALK-KRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGL 115

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (97), Expect = 4e-06
 Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 63  RVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP 122
            V  A+      +   + +V ++V          + + T++  G  P+W +   F ++  
Sbjct: 7   GVKKAKFDGAQEKF--NTYVTLKVQ--------NVKSTTIAVRGSQPSWEQDFMFEINRL 56

Query: 123 EMALLRFVCQDEDMFGDSNFIGQATYPVYTNRFP 156
           ++ L      ++ +  D   +G    P+ T R  
Sbjct: 57  DLGLT-VEVWNKGLIWD-TMVGTVWIPLRTIRQS 88

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 6e-06
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 51  SLVGVTRVKVLLRVLAARHL-TRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNP 109
           SL   +++++   V++A+    +      SP+VEV V G               +N  +P
Sbjct: 1   SLTMKSQLQI--TVISAKLKENKKNWFGPSPYVEVTVDGQSK-------KTEKCNNTNSP 51

Query: 110 TWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
            W +     V        R              +G A   +
Sbjct: 52  KWKQPLTVIVTPVSKLHFR--VWSHQTLKSDVLLGTAALDI 90

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 1e-04
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 13/99 (13%)

Query: 53  VGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW 111
           VG+ +V    +VL A  L  +     S PF  +E+                     NP W
Sbjct: 5   VGILQV----KVLKAADLLAADFSGKSDPFCLLELGNDRLQ-------THTVYKNLNPEW 53

Query: 112 NESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
           N+   F + +    +L     DED     +F+G+   P+
Sbjct: 54  NKVFTFPIKDI-HDVLEVTVFDEDGDKPPDFLGKVAIPL 91

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 6e-04
 Identities = 10/85 (11%), Positives = 24/85 (28%), Gaps = 3/85 (3%)

Query: 58  VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
           +++         L       + PF  V++      T    T          P W  + + 
Sbjct: 5   LRISFNSYELGSLQAEDD-ASQPFCAVKMKE-ALTTDRGKTLVQKKPT-MYPEWKSTFDA 61

Query: 118 TVHNPEMALLRFVCQDEDMFGDSNF 142
            ++   +  +  +   ED   +   
Sbjct: 62  HIYEGRVIQIVLMRAAEDPMSEVTV 86

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 12/96 (12%), Positives = 23/96 (23%), Gaps = 10/96 (10%)

Query: 62  LRVLAARHLTRSGRCTTSPFVEVEVLG-------ADYDTGLKLTTKTVSDNGFNPTWNES 114
           +++  A  L  +                       + D      T T      +P W++ 
Sbjct: 10  IKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATK-QKTNSPAWHDE 68

Query: 115 CEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
               V N            +   G  +F+   T   
Sbjct: 69  FVTDVCNGRKI--ELAVFHDAPIGYDDFVANCTIQF 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.92
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.87
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.85
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.82
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.82
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.81
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.8
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.8
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.79
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.79
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.78
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.78
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.77
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.77
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.76
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.75
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.74
d1qasa3	327	Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n	99.73
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.72
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.69
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.51
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	97.57

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=8.1e-25  Score=145.69  Aligned_cols=99  Identities=33%  Similarity=0.618  Sum_probs=85.9

Q ss_pred             eeEEEEEEEeeeeecccCC---CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEE
Q psy12820         56 TRVKVLLRVLAARHLTRSG---RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQ  132 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~~---~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~  132 (156)
                      .+.+|+|+|++|++|+..+   .+.+||||++++.+...+.. +++|++++++++||.|||+|.|.+..++.+.|+|+||
T Consensus         2 ~p~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~-~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~   80 (131)
T d1qasa2           2 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTG-SRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE   80 (131)
T ss_dssp             CCEEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCE-EEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcE-EEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEE
Confidence            3578999999999997543   56789999999987765566 8899998888789999999999998888889999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~~  155 (156)
                      |+|..+++++||++.+||+++++
T Consensus        81 D~d~~~~d~~iG~~~i~l~~l~~  103 (131)
T d1qasa2          81 DYDSSSKNDFIGQSTIPWNSLKQ  103 (131)
T ss_dssp             ECCTTTCCEEEEEEEEEGGGBCC
T ss_pred             EecCCCCCcEEEEEEEEEeccCC
Confidence            99999999999999999998864

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.1e-22  Score=129.72  Aligned_cols=90  Identities=29%  Similarity=0.523  Sum_probs=74.2

Q ss_pred             EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEe-cCCCCCCeeCce-EEE-EEeCCCccEEEEEEEecC
Q psy12820         59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTV-SDNGFNPTWNES-CEF-TVHNPEMALLRFVCQDED  135 (156)
Q Consensus        59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~-~~~~~nP~w~e~-f~f-~v~~~~~~~l~~~V~d~~  135 (156)
                      +|+|+|++|++|+..   ..||||+|++.|.+.|...+.+|++. ++||+||.|||. |.| .+..++++.|+|.|||++
T Consensus         2 tl~V~Visaq~L~~~---~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d   78 (122)
T d2zkmx2           2 TLSITVISGQFLSER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG   78 (122)
T ss_dssp             EEEEEEEEEESCCSS---CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT
T ss_pred             EEEEEEEEeeCCCCC---CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC
Confidence            699999999999854   47999999999877766545556544 567799999976 444 467788899999999985


Q ss_pred             CCCCCceEEEEEEECCCCCC
Q psy12820        136 MFGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       136 ~~~~~~~iG~~~i~l~~l~~  155 (156)
                          +++||++++|+++|++
T Consensus        79 ----~~~lG~~~ipl~~l~~   94 (122)
T d2zkmx2          79 ----NKFLGHRIIPINALNS   94 (122)
T ss_dssp             ----TEEEEEEEEEGGGBCC
T ss_pred             ----CCEEEEEEEEcccCcC
Confidence                6899999999999875

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=2e-21  Score=129.10  Aligned_cols=96  Identities=22%  Similarity=0.408  Sum_probs=81.9

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc-cEEEEEEEec
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM-ALLRFVCQDE  134 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~-~~l~~~V~d~  134 (156)
                      ...|.|+|++|++|+..+ .+.+||||++.+.+.+.... +++|++++++ .||+|||+|.|.+..++. ..|.|+|||+
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~-~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~L~i~V~d~   91 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSES-KQKTKTIKCS-LNPEWNETFRFQLKESDKDRRLSVEIWDW   91 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSS-CEECCCCSSC-SSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCcc-ccEEeeecCC-CCCccceEEEEEeEccccCCEEeEEEEec
Confidence            357999999999998876 66889999999976544444 8899999988 999999999999876544 4799999999


Q ss_pred             CCCCCCceEEEEEEECCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~  154 (156)
                      +..+++++||.+.++++++.
T Consensus        92 d~~~~d~~iG~~~i~l~~l~  111 (132)
T d1a25a_          92 DLTSRNDFMGSLSFGISELQ  111 (132)
T ss_dssp             CSSSCCEEEEEEEEEHHHHT
T ss_pred             CCCCCCcEeEEEEEeHHHcC
Confidence            99999999999999997764

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.6e-21  Score=126.35  Aligned_cols=90  Identities=28%  Similarity=0.452  Sum_probs=79.0

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM  136 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~  136 (156)
                      +.|+|+|++|++|+..+ .+.+||||++.+.     .. +++|++++++ .||.|||+|.|.+..+. ..|.|+|||++.
T Consensus         6 G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~-----~~-~~~T~~~~~t-~nP~wne~f~f~v~~~~-~~L~i~V~d~~~   77 (126)
T d2ep6a1           6 GILQVKVLKAADLLAADFSGKSDPFCLLELG-----ND-RLQTHTVYKN-LNPEWNKVFTFPIKDIH-DVLEVTVFDEDG   77 (126)
T ss_dssp             EEEEEEEEEEESCCCSSSSSCCCEEEEEEET-----TE-EEECCCCSSC-SSCCCCEEEEEEESCTT-CEEEEEEEEEET
T ss_pred             EEEEEEEEEeECCCCCCCCCCcCeEEEEEcC-----Ce-EEEEEeeCCc-eeEEEEEEEEEEEeccC-ceeEEEEEEccC
Confidence            58999999999999876 6789999999973     33 7899999887 99999999999988654 689999999999


Q ss_pred             CCCCceEEEEEEECCCCCC
Q psy12820        137 FGDSNFIGQATYPVYTNRF  155 (156)
Q Consensus       137 ~~~~~~iG~~~i~l~~l~~  155 (156)
                      .+++++||++.++++++..
T Consensus        78 ~~~d~~lG~~~i~l~~l~~   96 (126)
T d2ep6a1          78 DKPPDFLGKVAIPLLSIRD   96 (126)
T ss_dssp             TEEEEECCBCEEEGGGCCS
T ss_pred             CcCcceEEEEEEEHHHCCC
Confidence            8888999999999988753

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.6e-20  Score=121.89  Aligned_cols=93  Identities=25%  Similarity=0.418  Sum_probs=78.6

Q ss_pred             eEEEEEEEeeeeecccCC----CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG----RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQ  132 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~----~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~  132 (156)
                      .++|+|+|++|++|+...    .+.+||||++.+.+.   ...+++|++++++ .||.|||+|.|.+..++...|.|.||
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~---~~~~~~T~~~~~t-~nP~wne~f~f~i~~~~~~~L~v~V~   77 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT---PDSRKRTRHFNND-INPVWNETFEFILDPNQENVLEITLM   77 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTS---TTCCEECCCCTTC-SSCEEEEEEEEEECTTSCCEEEEEEE
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCc---ccceeEeeecCCC-ccceeceeeeecccCcccCcEEEEEE
Confidence            468999999999998753    468899999997432   2237899998888 99999999999998777778999999


Q ss_pred             ecCCCCCCceEEEEEEECCCCC
Q psy12820        133 DEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       133 d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      |++..+ +++||++.++|++|.
T Consensus        78 d~d~~~-d~~lG~~~i~L~~l~   98 (126)
T d1rlwa_          78 DANYVM-DETLGTATFTVSSMK   98 (126)
T ss_dssp             ECCSSC-CEEEEEEEEEGGGSC
T ss_pred             ECCCCC-CCeEEEEEEEHHHcc
Confidence            998764 689999999998875

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.81  E-value=3.5e-20  Score=123.58  Aligned_cols=90  Identities=22%  Similarity=0.350  Sum_probs=76.9

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED  135 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~  135 (156)
                      ...|+|+|++|++|+..+ .+.+||||++.+.     .. +.+|+++++++.||.|||+|.|.+..+. ..|.|+|||++
T Consensus         9 ~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~-----~~-~~~t~~~~~~~~nP~Wne~f~f~v~~~~-~~L~v~V~d~d   81 (136)
T d1wfja_           9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR-----TQ-DQKSNVAEGMGTTPEWNETFIFTVSEGT-TELKAKIFDKD   81 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSSCSSCCCEEEESS-----SC-EEECCCCTTCCSSCEEEEEEEEEEESSC-CEEEEEECCSS
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCCCccEEEEEe-----ee-eEEEEEEecCCCcEEEeeEEEEEEcCcc-ceEEEEEEEec
Confidence            368999999999999876 6889999999863     23 6788888765599999999999998654 46999999999


Q ss_pred             CCCCCceEEEEEEECCCC
Q psy12820        136 MFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       136 ~~~~~~~iG~~~i~l~~l  153 (156)
                      ..+++++||++.++|.++
T Consensus        82 ~~~~d~~iG~~~i~L~~l   99 (136)
T d1wfja_          82 VGTEDDAVGEATIPLEPV   99 (136)
T ss_dssp             SCTTTCCSEEEEEESHHH
T ss_pred             CCCCCCEEEEEEEEhHHh
Confidence            999999999999998764

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=7.4e-20  Score=121.15  Aligned_cols=91  Identities=27%  Similarity=0.441  Sum_probs=76.4

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD  133 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d  133 (156)
                      ..+|.|+|++|++|+..+ .+.+||||++++.+.  +.. +++|++++++ .||+|||+|.|.+...+.  ..|.|+|||
T Consensus        17 ~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~--~~~-~~kT~v~~~t-~~P~wne~f~f~v~~~~~~~~~L~v~V~d   92 (130)
T d1dqva1          17 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD--RKK-KFQTKVHRKT-LNPIFNETFQFSVPLAELAQRKLHFSVYD   92 (130)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTS--TTS-CEECCCCCSC-SSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred             CCEEEEEEEeeeCCccccCCCCcceEEEEEEccC--CCc-eEeceeEcCC-CCeeeeeEEEEEEchHHcCCCeEEEEEEE
Confidence            357999999999998765 678899999998632  233 7899999888 999999999999875543  478999999


Q ss_pred             cCCCCCCceEEEEEEECC
Q psy12820        134 EDMFGDSNFIGQATYPVY  151 (156)
Q Consensus       134 ~~~~~~~~~iG~~~i~l~  151 (156)
                      ++.++++++||++.|++.
T Consensus        93 ~~~~~~d~~iG~~~i~~~  110 (130)
T d1dqva1          93 FDRFSRHDLIGQVVLDNL  110 (130)
T ss_dssp             CCSSSCCCEEEEEECCCT
T ss_pred             cCCCCCCceEEEEEECch
Confidence            999999999999999854

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=3e-19  Score=118.97  Aligned_cols=94  Identities=17%  Similarity=0.291  Sum_probs=78.7

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d~  134 (156)
                      .+|.|+|++|++|+..+ .+.+||||++.+........ ++||++++++ .||.|||+|.|.+...++  ..|.|.|||+
T Consensus        15 ~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~v~~~t-~~P~wne~f~f~v~~~~l~~~~l~v~v~~~   92 (137)
T d2cm5a1          15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKA-KHKTQIKKKT-LNPEFNEEFFYDIKHSDLAKKSLDISVWDY   92 (137)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CC-EEECCCCCSC-SSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccce-eecCEeEcCC-CCCccceEEEEEeEHHHccccEEEEEeeeC
Confidence            47999999999998765 67889999999875433333 7899999988 999999999999876544  4899999999


Q ss_pred             CCCCCCceEEEEEEECCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l  153 (156)
                      +..+++++||++.+++.++
T Consensus        93 ~~~~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          93 DIGKSNDYIGGCQLGISAK  111 (137)
T ss_dssp             CSSSCCEEEEEEEEETTCC
T ss_pred             CCCCCCCEEEEEEeCcccc
Confidence            9999999999999999764

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-19  Score=119.67  Aligned_cols=88  Identities=19%  Similarity=0.359  Sum_probs=75.3

Q ss_pred             eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820         57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED  135 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~  135 (156)
                      +.+|.|+|++|++++..+ .+.+||||++.+.     .. +++|++++++ .||.|||.|.|.+..  ...|.|+|||++
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~-----~~-~~kT~v~~~t-~nP~wne~f~f~~~~--~~~l~~~V~d~d   75 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVD-----GQ-SKKTEKCNNT-NSPKWKQPLTVIVTP--VSKLHFRVWSHQ   75 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEET-----TE-EEECCCCSSC-SSCEEEEEEEEEECT--TCEEEEEEEECC
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEEC-----Ce-EEeeEEEEec-ccEEEcceEEEEEEe--cceeEEEEEEcc
Confidence            468999999999998754 6678999999973     23 7899998887 999999999999864  368999999999


Q ss_pred             CCCCCceEEEEEEECCCC
Q psy12820        136 MFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       136 ~~~~~~~iG~~~i~l~~l  153 (156)
                      .+++|++||++.++|.++
T Consensus        76 ~~~~d~~iG~~~i~L~~l   93 (133)
T d2nq3a1          76 TLKSDVLLGTAALDIYET   93 (133)
T ss_dssp             SSSCCEEEEEEEEEHHHH
T ss_pred             CCCCCceEEEEEEEHHHh
Confidence            999999999999998764

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.2e-19  Score=121.94  Aligned_cols=93  Identities=28%  Similarity=0.398  Sum_probs=78.8

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC--ccEEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE--MALLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~--~~~l~~~V~d~  134 (156)
                      .+|.|+|++|++|+..+ .+.+||||++.+.+.  +.. +.+|++++++ .||.|||+|.|.+...+  ...|.|+|||+
T Consensus        34 ~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~--~~~-~~kT~~~~~t-~~P~wne~f~f~i~~~~l~~~~L~i~V~d~  109 (143)
T d1rsya_          34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD--KKK-KFETKVHRKT-LNPVFNEQFTFKVPYSELGGKTLVMAVYDF  109 (143)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETT--CCS-CEECCCCTTC-SSCEEEEEEEECCCHHHHTTCEEEEEEEEC
T ss_pred             CEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCC--CCe-eEEEEEeccc-cCcceeeeeEEEEEeeccCCceEEEEEEEc
Confidence            47999999999998775 678899999998743  233 7889998887 99999999999876443  34899999999


Q ss_pred             CCCCCCceEEEEEEECCCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l~  154 (156)
                      +..+++++||++.++|+++.
T Consensus       110 d~~~~~~~iG~~~i~L~~~~  129 (143)
T d1rsya_         110 DRFSKHDIIGEFKVPMNTVD  129 (143)
T ss_dssp             CSSSCCEEEEEEEEEGGGCC
T ss_pred             CCCCCCcEEEEEEEEchhcc
Confidence            99999999999999998874

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=2.9e-19  Score=119.39  Aligned_cols=94  Identities=22%  Similarity=0.275  Sum_probs=74.8

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d~  134 (156)
                      .+|.|+|++|++|+..+ .+.+||||++.+...+. ...+++|++++++ .||.|||+|.|.+...+..  .|.|.|||+
T Consensus        15 ~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~-~~~~~kT~~~~~t-~~P~wne~f~F~v~~~~~~~~~l~i~v~d~   92 (138)
T d1w15a_          15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKK-RISKKKTHVKKCT-PNAVFNELFVFDIPCESLEEISVEFLVLDS   92 (138)
T ss_dssp             TEEEEEEEEEESCC------CCCEEEEEEEEETTE-EEEEEECCCCCSC-SSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcc-cCccccceeECCC-CCCeECcEEEEEecHHHhCccEEEEEEEeC
Confidence            47999999999998875 66789999999865322 2236789988888 9999999999998765543  799999999


Q ss_pred             CCCCCCceEEEEEEECCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l  153 (156)
                      +..+++++||++.+++.+.
T Consensus        93 ~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          93 ERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             CTTSCCEEEEEEEESTTCC
T ss_pred             CCCCCCCEEEEEEEcchhC
Confidence            9999999999999998763

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.2e-19  Score=117.45  Aligned_cols=94  Identities=20%  Similarity=0.428  Sum_probs=77.4

Q ss_pred             eEEEEEEEeeeeecccCC-C-CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCCc--cEEEEEE
Q psy12820         57 RVKVLLRVLAARHLTRSG-R-CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPEM--ALLRFVC  131 (156)
Q Consensus        57 ~~~L~v~v~~a~~L~~~~-~-~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~~--~~l~~~V  131 (156)
                      ...|.|+|++|++|+..+ . +.+||||++.+.+.  ... +++|++++++ .||.|||+|.|. +...++  ..|+|+|
T Consensus        21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~--~~~-~~kT~v~~~t-~nP~wne~f~f~~~~~~~l~~~~L~~~V   96 (138)
T d1ugka_          21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE--KKH-KVKTRVLRKT-LDPAFDETFTFYGIPYTQIQELALHFTI   96 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETT--TCS-EEECCCCSSC-SSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCC--CCE-eEeCeeEeCC-CCCceeeEEEEeeeCHHHcccceEEEEE
Confidence            357999999999998764 3 35799999998742  233 7899998887 999999999997 444333  3799999


Q ss_pred             EecCCCCCCceEEEEEEECCCCC
Q psy12820        132 QDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       132 ~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      ||++.++++++||++.++|+++.
T Consensus        97 ~d~d~~~~~~~iG~~~i~L~~~~  119 (138)
T d1ugka_          97 LSFDRFSRDDIIGEVLIPLSGIE  119 (138)
T ss_dssp             EEECSSCCCCCCEEEEEECTTCC
T ss_pred             EECCCCCCCcEEEEEEEEccccc
Confidence            99999999999999999998874

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=6.6e-19  Score=120.06  Aligned_cols=94  Identities=21%  Similarity=0.316  Sum_probs=78.2

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d~  134 (156)
                      .+|.|+|++|++|+..+ .+.+||||++++...+. ...+++|++++++ .||+|||+|.|.+..+++  ..|.|+|||+
T Consensus        25 ~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~-~~~~~kT~v~~~t-~nP~wne~f~F~v~~~~l~~~~l~i~v~d~  102 (157)
T d1uowa_          25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK-RLKKKKTTIKKNT-LNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (157)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTE-EEEEEECCCCCSC-SSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCc-cccceecccccCC-CCcccCCeEEEEecHHHcCccEEEEEEccc
Confidence            47999999999998765 67899999999864322 1225688888877 999999999999886654  3899999999


Q ss_pred             CCCCCCceEEEEEEECCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l  153 (156)
                      +.++++++||++.|++.+.
T Consensus       103 ~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_         103 DKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             CSSSCCCEEEEEEEETTCC
T ss_pred             CCCCCCceeEEEEEecccC
Confidence            9999999999999999763

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.1e-19  Score=116.22  Aligned_cols=95  Identities=25%  Similarity=0.462  Sum_probs=74.0

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCCc--cEEEEEEEe
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPEM--ALLRFVCQD  133 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~~--~~l~~~V~d  133 (156)
                      .+|.|+|++|++|+..+ .+.+||||++.+........ ++||++++++ .||.|||+|.|. +...++  ..|.|+|||
T Consensus        14 ~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~-~~kT~~~~~t-~~P~wne~f~f~~~~~~~l~~~~L~i~v~d   91 (125)
T d2bwqa1          14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKN-KRRTKTVKKT-LEPKWNQTFIYSPVHRREFRERMLEITLWD   91 (125)
T ss_dssp             TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGG-EEECCCCSSB-SSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred             CEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCcc-ccccCEEcCC-CCCEEccEEEEeeeChhhcCCCEEEEEEEE
Confidence            47999999999998764 67889999999975433333 7899999987 999999999997 554433  379999999


Q ss_pred             cCCC--CCCceEEEEEEECCCCC
Q psy12820        134 EDMF--GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       134 ~~~~--~~~~~iG~~~i~l~~l~  154 (156)
                      ++..  +++++||++.++++++.
T Consensus        92 ~~~~~~~~~~~iG~~~i~l~~~~  114 (125)
T d2bwqa1          92 QARVREEESEFLGEILIELETAL  114 (125)
T ss_dssp             C-------CEEEEEEEEEGGGCC
T ss_pred             CCCCCCCCCeeEEEEEEEchhcC
Confidence            9865  34569999999998764

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3e-18  Score=114.41  Aligned_cols=92  Identities=15%  Similarity=0.212  Sum_probs=77.0

Q ss_pred             EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEecC
Q psy12820         58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDED  135 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d~~  135 (156)
                      ..|.|+|++|++|+.  .+.+||||++.+.+. . ...+++|++++++ .||+|||+|.|.+...++  ..|.|+|||++
T Consensus        26 ~~L~V~v~~a~~L~~--~g~~dpyVkv~l~~~-~-~~~~~kT~v~~~~-~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~  100 (138)
T d1wfma_          26 AELFVTRLEAVTSNH--DGGCDCYVQGSVANR-T-GSVEAQTALKKRQ-LHTTWEEGLVLPLAEEELPTATLTLTLRTCD  100 (138)
T ss_dssp             TEEEEEEEEEECCCC--SSCCCEEEEEEEEET-T-EEEEEECCCCCCC-SSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred             CEEEEEEEEcCCCCC--CCCcCcEEEEEECCC-C-CccceeeeEECCC-CCceEeeeEEEEeeehhccceEEEEEEeeec
Confidence            479999999999964  456899999998643 1 2226789988887 999999999999876554  48999999999


Q ss_pred             CCCCCceEEEEEEECCCCC
Q psy12820        136 MFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       136 ~~~~~~~iG~~~i~l~~l~  154 (156)
                      .++++++||++.|+|.++.
T Consensus       101 ~~~~~~~iG~~~i~L~~l~  119 (138)
T d1wfma_         101 RFSRHSVAGELRLGLDGTS  119 (138)
T ss_dssp             SSCTTSCSEEEEEESSSSS
T ss_pred             ccccceeeeEEEEEhHHcc
Confidence            9999999999999998874

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.75  E-value=2.5e-18  Score=114.54  Aligned_cols=90  Identities=14%  Similarity=0.199  Sum_probs=75.7

Q ss_pred             eeEEEEEEEeeeeecccC------------CCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC
Q psy12820         56 TRVKVLLRVLAARHLTRS------------GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE  123 (156)
Q Consensus        56 ~~~~L~v~v~~a~~L~~~------------~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~  123 (156)
                      ....|+|+|++|++|++.            ..+.+||||++.+-     .....+|++++++ .||.|||+|.|.+..+ 
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~-----~~~~~~T~~~~~t-~~P~Wne~f~f~v~~~-   76 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD-----DSRIGQTATKQKT-NSPAWHDEFVTDVCNG-   76 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET-----TEEEEECCCCSSC-SSCEEEEEEEEEEEEE-
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeC-----CCcCcEeeEEcCC-CCccCccEEEEEEecC-
Confidence            467899999999999864            25578999999982     3325678888887 8999999999998753 


Q ss_pred             ccEEEEEEEecCCCCCCceEEEEEEECCCC
Q psy12820        124 MALLRFVCQDEDMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       124 ~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l  153 (156)
                       ..|.|+|||++..+++++||++.++|+++
T Consensus        77 -~~l~i~V~d~~~~~~d~~iG~~~i~l~~l  105 (136)
T d1gmia_          77 -RKIELAVFHDAPIGYDDFVANCTIQFEEL  105 (136)
T ss_dssp             -CEEEEEEEECCSSSSCEEEEEEEEEHHHH
T ss_pred             -CceEEEEEEecCCCCceeEEEEEEEHHHh
Confidence             57999999999999999999999999765

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=5.2e-19  Score=118.44  Aligned_cols=96  Identities=24%  Similarity=0.398  Sum_probs=76.9

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCC--------CceEEeEEecCCCCCCeeCceEEEEEeCC---Ccc
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDT--------GLKLTTKTVSDNGFNPTWNESCEFTVHNP---EMA  125 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~--------~~~~kT~~~~~~~~nP~w~e~f~f~v~~~---~~~  125 (156)
                      ..|.|+|++|++|+..+ .+.+||||++.+.......        ..++||++++++ .||.|||+|.|.+...   ...
T Consensus        18 ~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS-LNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHH-HSCEEEEEEEECSCCHHHHTTC
T ss_pred             CEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCC-CCceeEEEEEEeeecccccCCC
Confidence            47999999999998875 6789999999986432211        114578888887 9999999999973321   234


Q ss_pred             EEEEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820        126 LLRFVCQDEDMFGDSNFIGQATYPVYTNR  154 (156)
Q Consensus       126 ~l~~~V~d~~~~~~~~~iG~~~i~l~~l~  154 (156)
                      .|.|+|||++.++++++||++.++|.++.
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~  125 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTS  125 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCG
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcC
Confidence            79999999999999999999999999874

>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Mammalian PLC
domain: Phospholipase C isozyme D1 (PLC-D1)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=5e-19  Score=133.67  Aligned_cols=46  Identities=33%  Similarity=0.595  Sum_probs=42.4

Q ss_pred             ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC--CCCCCC
Q psy12820          2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYD   48 (156)
Q Consensus         2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~--~~~p~~   48 (156)
                      .|||||||| |.|.+|++|.|||+.||+|||||||++||.+  .|+|..
T Consensus       274 ~Q~valN~Q-t~D~~m~ln~~~F~~NG~~GyVLKP~~Lr~~~~~f~p~~  321 (327)
T d1qasa3         274 CQIVALNFQ-TPGPEMDVYLGCFQDNGGCGYVLKPAFLRDPNTTFNSRA  321 (327)
T ss_dssp             CCEEEECTT-CCSHHHHHHHHHTTSGGGCSEEECCGGGSCTTCCCCTTS
T ss_pred             CcEEEEecc-CCChhHHHHHHHHHhcCCcceEECCHHHcCCCCCcCCCC
Confidence            499999999 9999999999999999999999999999986  477754

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=8.1e-19  Score=118.05  Aligned_cols=94  Identities=20%  Similarity=0.286  Sum_probs=78.4

Q ss_pred             EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEec
Q psy12820         58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDE  134 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d~  134 (156)
                      ..|.|+|++|++|+..+ .+.+||||++.+.+.+.... +++|++++++ .||.|||+|.|.+...+.  ..|.|.|||+
T Consensus        20 ~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~~~~~t-~~P~wne~f~F~v~~~~~~~~~l~v~v~d~   97 (145)
T d1dqva2          20 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLK-KRKTSIKKNT-LNPTYNEALVFDVAPESVENVGLSIAVVDY   97 (145)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTS-CEECCCCCSC-SSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             CEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccce-eecCEEEeCC-CCceecceEEEEEehhhcCCCEEEEEEEec
Confidence            47999999999998765 66789999999875433333 7889999887 999999999998775433  4788999999


Q ss_pred             CCCCCCceEEEEEEECCCC
Q psy12820        135 DMFGDSNFIGQATYPVYTN  153 (156)
Q Consensus       135 ~~~~~~~~iG~~~i~l~~l  153 (156)
                      +..+++++||++.|+++.+
T Consensus        98 ~~~~~~~~iG~~~i~l~~~  116 (145)
T d1dqva2          98 DCIGHNEVIGVCRVGPEAA  116 (145)
T ss_dssp             CSSSCCEEEEECCCSSCTT
T ss_pred             CCCCCCcEEEEEEECchHc
Confidence            9999999999999999765

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=4.2e-17  Score=107.39  Aligned_cols=85  Identities=19%  Similarity=0.259  Sum_probs=71.6

Q ss_pred             EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820         58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF  137 (156)
Q Consensus        58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~  137 (156)
                      ..|.|+|.+|++|...+  ..||||++.+.     .. +.+|++++ + .||.|||+|.|.+..++ ..|.|+|||++..
T Consensus         2 ~~L~V~v~~a~~l~~~~--~~dpYv~l~~~-----~~-k~~T~~~k-~-~nP~Wne~f~f~v~~~~-~~L~v~V~d~~~~   70 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE--KFNTYVTLKVQ-----NV-KSTTIAVR-G-SQPSWEQDFMFEINRLD-LGLTVEVWNKGLI   70 (128)
T ss_dssp             EEEEEEEEEEECSSCGG--GCEEEEEEEET-----TE-EEECCCEE-S-SSCEEEEEEEEEECCCS-SEEEEEEEECCSS
T ss_pred             eEEEEEEEEEECCCCCC--CcCeEEEEEeC-----CE-EEEEEEec-C-CCCeEEEEEEEeecccc-ceEEEEEEeCCCc
Confidence            46999999999998754  67999999983     33 77888775 4 69999999999998775 5789999999876


Q ss_pred             CCCceEEEEEEECCCCC
Q psy12820        138 GDSNFIGQATYPVYTNR  154 (156)
Q Consensus       138 ~~~~~iG~~~i~l~~l~  154 (156)
                      + +++||++.|||+++.
T Consensus        71 ~-d~~lG~~~I~L~~l~   86 (128)
T d2cjta1          71 W-DTMVGTVWIPLRTIR   86 (128)
T ss_dssp             C-EEEEEEEEEEGGGSC
T ss_pred             C-CcceEEEEEEehhhc
Confidence            4 789999999999875

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.7e-14  Score=94.11  Aligned_cols=85  Identities=13%  Similarity=0.161  Sum_probs=62.1

Q ss_pred             EEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCC
Q psy12820         60 VLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGD  139 (156)
Q Consensus        60 L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~  139 (156)
                      +.|.+..+..++.. .+.+||||+|.+.+...... +++|++.+++ +||+|||+|.|.+..  ...|.|.|||+|    
T Consensus         7 ~~~~~~~~~~~~~~-~~~~dPY~~v~l~~~~~~~~-~~~t~~~kkT-~nP~WnE~F~~~v~~--~~~l~i~V~d~d----   77 (123)
T d1bdya_           7 ISFNSYELGSLQAE-DDASQPFCAVKMKEALTTDR-GKTLVQKKPT-MYPEWKSTFDAHIYE--GRVIQIVLMRAA----   77 (123)
T ss_dssp             EEEEEEECCTTCCC-CCSCCCEEEEEEEEECCGGG-TTBEEECSCC-BCCCTTCEEEEECCT--TCEEEEEEEEET----
T ss_pred             EEEEEeecccCCCC-CCCCCCEEEEEEcCcccccc-ceEEEEeCCC-CCcccceEEEEEEcc--ccEEEEEEEEcc----
Confidence            44444444443332 67789999999965322222 4578888888 999999999998864  457999999985    


Q ss_pred             CceEEEEEEECCCC
Q psy12820        140 SNFIGQATYPVYTN  153 (156)
Q Consensus       140 ~~~iG~~~i~l~~l  153 (156)
                      ++++|.+.+++..|
T Consensus        78 d~~~g~~~i~l~~l   91 (123)
T d1bdya_          78 EDPMSEVTVGVSVL   91 (123)
T ss_dssp             TEEEEEEEEEHHHH
T ss_pred             ccccCccEEehhhe
Confidence            68999999987654