Psyllid ID: psy12837

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MNSVRFHITTFHGKYYTPVWKTSKVCNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMCRIYQFYTKPSYHSCESQVQALDLYSMKVKFHPLTGTQTCAPLFTRQTLSLTQIAAAKVIDDEVVGSRHLEQPKYFFRRDLLKKFWNH
Secondary Structure (PSIPRED)
cccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccEEEEEccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccEcHHHHHHHHHHcHHHHHHHHHHHcccHHHHccccccccEcccccHHEHccccccEEEEcccccccccccHHHHHHHHHHHHHHcEEEccccccccccccccEEEHHHHHHHHHcc
Coil and Loop (DISEMBL)
MNSVRFHITtfhgkyytpvwktsKVCNEEINLTGHIGKLWTARITagaeehgvpyplfregltrsnimldrktlsdlaaweprtfkvkkstvgtTMCRIYqfytkpsyhscesqVQALDLYSmkvkfhpltgtqtcaplftrqtlSLTQIAAAKViddevvgsrhleqpkyFFRRDLLKKFWNH
Flexible Loop (DISEMBL)
mnsvrfhittfhgkyytpvwKTSKVCNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTlsdlaaweprtfkvkkstvgttMCRIYQFYTKPSYHSCESQVQALDLYSMKVKFHPLTGTQTCAPLFTRQTLSLTQIAAAKviddevvgsrhleqpkyffrrdLLKKFWNH
Low Complexity Region (SEG)
MNSVRFHITTFHGKYYTPVWKTSKVCNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMCRIYQFYTKPSYHSCESQVQALDLYSMKVKFHPLTGTQTCAPLFTRQTLSLTQIAAAKVIDDEVVGSRHLEQPKYFFRRDLLKKFWNH
Disordered region (IsUnstruct)
***VRFHITTFHGKYYTPVWKTSKVCNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMCRIYQFYTKPSYHSCESQVQALDLYSMKVKFHPLTGTQTCAPLFTRQTLSLTQIAAAKVIDDEVVGSRHLEQPKYFFRRDLLKKFW**
Disordered Region (DISOPRED)
****RFH*TTFHGKYYTPVWKTSKVCNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGT***********************LDLYSMKVKFHPLTGTQTCAPLFTRQTLSLTQIAAAKVI*DEVV*SRHLEQPKYFFRRDLLKKFWN*
Disordered Region (DISEMBL)
MNSVRFHITTFHGKYYTPVWKTSKVCNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMCRIYQFYTKPSYHSCESQVQALDLYSMKVKFHPLTGTQTCAPLFTRQTLSLTQIAAAKVIDDEVVGSRHLEQPKYFFRRDLLKKFWNH
Disordered Region (DISPRO)
*NSVRFHITTFHGKYYTPVWKTSKVCNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMCRIYQFYTKPSYHSCESQVQALDLYSMKVKFHPLTGTQTCAPLFTRQTLSLTQIAAAKVIDDEVVGSRHLEQPKYFFRRDLLKKFWNH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSVRFHITTFHGKYYTPVWKTSKVCNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMCRIYQFYTKPSYHSCESQVQALDLYSMKVKFHPLTGTQTCAPLFTRQTLSLTQIAAAKVIDDEVVGSRHLEQPKYFFRRDLLKKFWNH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q2TBR2	149	39S ribosomal protein L20	yes	N/A	0.282	0.348	0.5	6e-09
B6IPJ8	119	50S ribosomal protein L20	yes	N/A	0.266	0.411	0.551	9e-09
Q9RSW7	118	50S ribosomal protein L20	yes	N/A	0.271	0.423	0.54	9e-09
Q2VYY8	118	50S ribosomal protein L20	yes	N/A	0.260	0.406	0.520	2e-08
A7HPK9	118	50S ribosomal protein L20	yes	N/A	0.266	0.415	0.510	3e-08
Q9CQL4	149	39S ribosomal protein L20	yes	N/A	0.260	0.322	0.520	3e-08
Q9BYC9	149	39S ribosomal protein L20	yes	N/A	0.260	0.322	0.5	5e-08
Q8XZ26	118	50S ribosomal protein L20	yes	N/A	0.255	0.398	0.531	7e-08
Q0ATG2	118	50S ribosomal protein L20	yes	N/A	0.266	0.415	0.489	8e-08
Q6KH18	117	50S ribosomal protein L20	yes	N/A	0.277	0.435	0.470	8e-08

>sp|Q2TBR2|RM20_BOVIN 39S ribosomal protein L20, mitochondrial OS=Bos taurus GN=MRPL20 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 36/52 (69%)

Query: 35  HIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           H+  LW  RITA ++EHG+ YP F   L +  + L+RK L+DLA +EP+TFK
Sbjct: 63  HLRTLWINRITAASQEHGLKYPAFILNLIKCQVELNRKVLADLAIYEPKTFK 114

Bos taurus (taxid: 9913)

>sp|B6IPJ8|RL20_RHOCS 50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplT PE=3 SV=1

 Score = 60.1 bits (144), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 32/49 (65%)

Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
           LW  RI AGA  HG+ Y  F  GL R+ I +DRK LSD+AA EP +FK 
Sbjct: 60  LWIQRINAGARLHGLTYSKFMHGLKRAGIEVDRKVLSDIAAREPESFKA 108

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684)

>sp|Q9RSW7|RL20_DEIRA 50S ribosomal protein L20 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=rplT PE=1 SV=1

 Score = 60.1 bits (144), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 33/50 (66%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
           +LW  RI AGA  HG+ Y  F  GL R+NI L+RK L+D+AA EP  FK 
Sbjct: 59  RLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKA 108

Binds directly to 23S rRNA, probably serving to organize its structure.

Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) (taxid: 243230)

>sp|Q2VYY8|RL20_MAGSA 50S ribosomal protein L20 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplT PE=3 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 32/48 (66%)

Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           LW  RI AG+  +G+PY  F +GL ++ I LDRK LSD+A  EP  FK
Sbjct: 60  LWIQRINAGSRAYGLPYSRFMDGLKKAGIALDRKVLSDIAIREPDAFK 107

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

>sp|A7HPK9|RL20_PARL1 50S ribosomal protein L20 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplT PE=3 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 31/49 (63%)

Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
           LW  RI AG  EHG+ Y  F +GL ++ I +DRK LSD+A  EP  FK 
Sbjct: 60  LWIQRINAGVREHGLTYSRFIDGLAKAGIEVDRKVLSDIAIHEPEAFKA 108

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881)

>sp|Q9CQL4|RM20_MOUSE 39S ribosomal protein L20, mitochondrial OS=Mus musculus GN=Mrpl20 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 33/48 (68%)

Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           LW  RITA ++EHG+ YP F   L +  + L+RK L DLA +EP+TFK
Sbjct: 67  LWINRITAASQEHGLKYPAFIVNLIKCQVELNRKVLVDLAIYEPKTFK 114

Mus musculus (taxid: 10090)

>sp|Q9BYC9|RM20_HUMAN 39S ribosomal protein L20, mitochondrial OS=Homo sapiens GN=MRPL20 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           LW  RITA ++EHG+ YP     L +  + L+RK L+DLA +EP+TFK
Sbjct: 67  LWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFK 114

Homo sapiens (taxid: 9606)

>sp|Q8XZ26|RL20_RALSO 50S ribosomal protein L20 OS=Ralstonia solanacearum (strain GMI1000) GN=rplT PE=3 SV=1

 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 31/47 (65%)

Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
           LW ARI AGA EHG+ Y  F  GL +++I LDRK LSD+A  +   F
Sbjct: 60  LWIARINAGAREHGLSYSKFMNGLKKASIELDRKVLSDMAIHDKVAF 106

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q0ATG2|RL20_MARMM 50S ribosomal protein L20 OS=Maricaulis maris (strain MCS10) GN=rplT PE=3 SV=1

 Score = 57.0 bits (136), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%)

Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
           LW  RI AGA +H + Y +F  GLT++ I +DRK L+D+A  EP  FK 
Sbjct: 60  LWIQRINAGARQHEMSYSVFMNGLTKAGIEVDRKVLADIAMHEPDAFKA 108

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Maricaulis maris (strain MCS10) (taxid: 394221)

>sp|Q6KH18|RL20_MYCMO 50S ribosomal protein L20 OS=Mycoplasma mobile (strain ATCC 43663 / 163K / NCTC 11711) GN=rplT PE=3 SV=1

 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 35  HIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
           H  +LW ARI A     GV Y LF  GL +SNI ++RK LS++A  +P+ F
Sbjct: 55  HFRRLWIARINAATRAQGVSYSLFINGLKKSNIQINRKMLSEIAIHQPKVF 105

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Mycoplasma mobile (strain ATCC 43663 / 163K / NCTC 11711) (taxid: 267748)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
389609715	158	mitochondrial ribosomal protein L20 [Pap	0.277	0.322	0.627	4e-11
156538877	147	PREDICTED: 39S ribosomal protein L20, mi	0.342	0.428	0.515	8e-11
170048586	134	39S ribosomal protein L20, mitochondrial	0.271	0.373	0.56	1e-10
389611189	158	mitochondrial ribosomal protein L20 [Pap	0.277	0.322	0.607	2e-10
312375154	465	hypothetical protein AND_14503 [Anophele	0.695	0.275	0.355	2e-10
242020523	392	50S ribosomal protein L20, putative [Ped	0.266	0.125	0.591	3e-10
114050757	159	ribosomal protein L20 [Bombyx mori] gi|8	0.266	0.308	0.612	4e-10
15705147	159	ribosomal protein L20 [Spodoptera frugip	0.315	0.364	0.517	7e-10
383849826	151	PREDICTED: 39S ribosomal protein L20, mi	0.266	0.324	0.591	8e-10
157138268	134	ribosomal protein L20, putative [Aedes a	0.271	0.373	0.54	1e-09

>gi|389609715|dbj|BAM18469.1| mitochondrial ribosomal protein L20 [Papilio xuthus]

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 39/51 (76%)

Query: 36  IGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           + +LW  RITA  E+H +     +EGL RSNIMLDRK+LSDLAAWEPRTF+
Sbjct: 64  MKELWNTRITAACEQHNISTFTLKEGLDRSNIMLDRKSLSDLAAWEPRTFE 114

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156538877|ref|XP_001599029.1| PREDICTED: 39S ribosomal protein L20, mitochondrial-like [Nasonia vitripennis]

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 3/66 (4%)

Query: 36  IGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTT 95
           I ++W  RI AG+ EHG+ Y + +EGLTR  I+LDRK+L++LA WEPRTF   KS V   
Sbjct: 64  IREIWQTRIEAGSIEHGLNYKILKEGLTRCEILLDRKSLAELAVWEPRTF---KSLVKIA 120

Query: 96  MCRIYQ 101
             R+ Q
Sbjct: 121 CARLKQ 126

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170048586|ref|XP_001853364.1| 39S ribosomal protein L20, mitochondrial [Culex quinquefasciatus] gi|167870649|gb|EDS34032.1| 39S ribosomal protein L20, mitochondrial [Culex quinquefasciatus]

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 41/50 (82%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
           +LWT RI AG E+HG+ YP F++GL R++++L++K L+DLA WEPRTF+ 
Sbjct: 66  ELWTQRINAGCEQHGLQYPAFQDGLYRNDVLLNKKVLADLAIWEPRTFEA 115

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611189|dbj|BAM19206.1| mitochondrial ribosomal protein L20 [Papilio polytes]

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 39/51 (76%)

Query: 36  IGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           + +LW  RITA  E+H +     +EGL RSNIML+RK+LSDLAAWEPRTF+
Sbjct: 64  MKELWNTRITAACEQHNISAFTLKEGLDRSNIMLNRKSLSDLAAWEPRTFE 114

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375154|gb|EFR22577.1| hypothetical protein AND_14503 [Anopheles darlingi]

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 7/135 (5%)

Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMCR 98
           LWT+R+ AG E+HG+ +  F+ GL R++I+L+RK L+DLA WEPRTF+   + +   +  
Sbjct: 67  LWTSRVNAGCEQHGMQFEAFQYGLYRNDILLNRKVLADLAIWEPRTFEA-LAQISQQVPE 125

Query: 99  IYQFYTKPSYHSCESQVQALDLYS-MKVKFHPLTGTQTCAPLFTRQTLSL-TQIAAAKVI 156
              F T   + S ES  Q L L S  KV     TG Q      ++Q +   TQ+     +
Sbjct: 126 EDGFTTSIRFASYESTRQNLKLNSNSKVICQGFTGKQ--GTFHSQQAIEYGTQLVGG--V 181

Query: 157 DDEVVGSRHLEQPKY 171
                G  HL++P +
Sbjct: 182 SPGKGGRTHLDRPVF 196

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020523|ref|XP_002430702.1| 50S ribosomal protein L20, putative [Pediculus humanus corporis] gi|212515892|gb|EEB17964.1| 50S ribosomal protein L20, putative [Pediculus humanus corporis]

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 36/49 (73%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +L   R+ A  EEHG+PYP  +E L RSNI+L++K L DLA WEPRTFK
Sbjct: 72  ELIQTRLNAACEEHGLPYPYLKESLIRSNILLNKKILVDLAIWEPRTFK 120

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114050757|ref|NP_001040151.1| ribosomal protein L20 [Bombyx mori] gi|87248217|gb|ABD36161.1| ribosomal protein L20 [Bombyx mori]

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 37/49 (75%)

Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
           LW  RITA  E+H +     REGL R+NIMLDRK+LSDLA+WEP+TF+ 
Sbjct: 67  LWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEA 115

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|15705147|gb|AAL03954.1| ribosomal protein L20 [Spodoptera frugiperda]

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 39/58 (67%)

Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTM 96
           LW+ RITA  E+H +     ++GL R+NIMLDRK+LSDLA WEPRTF+   +     M
Sbjct: 67  LWSTRITAACEQHNITPCTLKQGLDRANIMLDRKSLSDLACWEPRTFECLAAVAKQKM 124

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849826|ref|XP_003700536.1| PREDICTED: 39S ribosomal protein L20, mitochondrial-like [Megachile rotundata]

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 37/49 (75%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW  RI A A+EHG+ +    EGLTR NI+L+RK+L+ LA WEPRTFK
Sbjct: 66  ELWETRIDAAAQEHGITFKTLMEGLTRCNILLNRKSLATLAVWEPRTFK 114

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157138268|ref|XP_001664205.1| ribosomal protein L20, putative [Aedes aegypti] gi|108869540|gb|EAT33765.1| AAEL013964-PA [Aedes aegypti]

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 39/50 (78%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
           +LWT RI AG E+HG+ +  F++GL R+ ++L+RK L+DLA WEPRTF+ 
Sbjct: 66  ELWTQRINAGCEQHGMQFAAFQDGLHRNEVLLNRKVLADLAIWEPRTFEA 115

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
FB|FBgn0036335	150	mRpL20 "mitochondrial ribosoma	0.277	0.34	0.509	3.5e-11
UNIPROTKB|Q2TBR2	149	MRPL20 "39S ribosomal protein	0.282	0.348	0.5	6.6e-10
UNIPROTKB|E2QZ57	149	MRPL20 "Uncharacterized protei	0.260	0.322	0.520	2.9e-09
UNIPROTKB|F1RJD0	149	MRPL20 "Uncharacterized protei	0.260	0.322	0.520	3.6e-09
MGI|MGI:2137221	149	Mrpl20 "mitochondrial ribosoma	0.260	0.322	0.520	5.9e-09
RGD|1588219	149	Mrpl20 "mitochondrial ribosoma	0.260	0.322	0.520	5.9e-09
UNIPROTKB|Q9BYC9	149	MRPL20 "39S ribosomal protein	0.260	0.322	0.5	9.7e-09
TAIR|locus:2015661	126	AT1G16740 [Arabidopsis thalian	0.260	0.380	0.520	3.3e-08
DICTYBASE|DDB_G0273771	122	DDB_G0273771 "50S ribosomal pr	0.342	0.516	0.417	8.7e-08
DICTYBASE|DDB_G0273295	122	DDB_G0273295 "39S ribosomal pr	0.342	0.516	0.417	8.7e-08

FB|FBgn0036335 mRpL20 "mitochondrial ribosomal protein L20" [Drosophila melanogaster (taxid:7227)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 26/51 (50%), Positives = 40/51 (78%)

Query:    36 IGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
             + +LW+ R+ AG +++GV    F+EGL RS+I+L++K LSDLA WEPR+F+
Sbjct:    64 MAQLWSTRVEAGCQQYGVGLETFKEGLARSDILLNKKVLSDLAIWEPRSFE 114

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0019843 "rRNA binding" evidence=IEA

UNIPROTKB|Q2TBR2 MRPL20 "39S ribosomal protein L20, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 26/52 (50%), Positives = 36/52 (69%)

Query:    35 HIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
             H+  LW  RITA ++EHG+ YP F   L +  + L+RK L+DLA +EP+TFK
Sbjct:    63 HLRTLWINRITAASQEHGLKYPAFILNLIKCQVELNRKVLADLAIYEPKTFK 114

GO:0005761 "mitochondrial ribosome" evidence=ISS

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2QZ57 MRPL20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 25/48 (52%), Positives = 34/48 (70%)

Query:    39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
             LW  RITA ++EHG+ YP F   L +  + L+RK L+DLA +EP+TFK
Sbjct:    67 LWINRITAASQEHGLKYPAFIVNLIKCQVELNRKVLADLAIYEPKTFK 114

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1RJD0 MRPL20 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/48 (52%), Positives = 34/48 (70%)

Query:    39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
             LW  RITA ++EHG+ YP F   L +  + L+RK L+DLA +EP+TFK
Sbjct:    67 LWINRITAASQEHGLKYPAFIINLIKCQVELNRKVLADLAIYEPKTFK 114

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:2137221 Mrpl20 "mitochondrial ribosomal protein L20" [Mus musculus (taxid:10090)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 25/48 (52%), Positives = 33/48 (68%)

Query:    39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
             LW  RITA ++EHG+ YP F   L +  + L+RK L DLA +EP+TFK
Sbjct:    67 LWINRITAASQEHGLKYPAFIVNLIKCQVELNRKVLVDLAIYEPKTFK 114

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005761 "mitochondrial ribosome" evidence=ISO

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISO

GO:0019843 "rRNA binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1588219 Mrpl20 "mitochondrial ribosomal protein L20" [Rattus norvegicus (taxid:10116)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 25/48 (52%), Positives = 33/48 (68%)

Query:    39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
             LW  RITA ++EHG+ YP F   L +  + L+RK L DLA +EP+TFK
Sbjct:    67 LWINRITAASQEHGLQYPAFILNLVKCQVELNRKVLVDLAIYEPKTFK 114

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005761 "mitochondrial ribosome" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

UNIPROTKB|Q9BYC9 MRPL20 "39S ribosomal protein L20, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query:    39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
             LW  RITA ++EHG+ YP     L +  + L+RK L+DLA +EP+TFK
Sbjct:    67 LWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFK 114

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005761 "mitochondrial ribosome" evidence=IDA

TAIR|locus:2015661 AT1G16740 [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 25/48 (52%), Positives = 32/48 (66%)

Query:    39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
             LW  RI AG+ +HGV Y  F  GL + NI L+RK LS+L+  EP +FK
Sbjct:    49 LWIERINAGSRQHGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFK 96

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0019843 "rRNA binding" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=ISS

DICTYBASE|DDB_G0273771 DDB_G0273771 "50S ribosomal protein L20" [Dictyostelium discoideum (taxid:44689)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 28/67 (41%), Positives = 39/67 (58%)

Query:    38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV----KKSTVG 93
             K+W  RI AGA +H + Y  F+ GL  S + ++RK LS+LA  EP +FKV     K+TV 
Sbjct:    48 KMWIERINAGARQHEMTYSDFQRGLIASGVEINRKILSELAVSEPFSFKVLVDHSKNTVS 107

Query:    94 TTMCRIY 100
                 + Y
Sbjct:   108 NLHPKSY 114

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0273295 DDB_G0273295 "39S ribosomal protein L20, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 28/67 (41%), Positives = 39/67 (58%)

Query:    38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV----KKSTVG 93
             K+W  RI AGA +H + Y  F+ GL  S + ++RK LS+LA  EP +FKV     K+TV 
Sbjct:    48 KMWIERINAGARQHEMTYSDFQRGLIASGVEINRKILSELAVSEPFSFKVLVDHSKNTVS 107

Query:    94 TTMCRIY 100
                 + Y
Sbjct:   108 NLHPKSY 114

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A7HPK9	RL20_PARL1	No assigned EC number	0.5102	0.2663	0.4152	yes	N/A
Q9RSW7	RL20_DEIRA	No assigned EC number	0.54	0.2717	0.4237	yes	N/A
B6IPJ8	RL20_RHOCS	No assigned EC number	0.5510	0.2663	0.4117	yes	N/A
Q2VYY8	RL20_MAGSA	No assigned EC number	0.5208	0.2608	0.4067	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	184
cd07026	106	cd07026, Ribosomal_L20, Ribosomal protein L20	2e-17
pfam00453	108	pfam00453, Ribosomal_L20, Ribosomal protein L20	4e-16
PTZ00030	121	PTZ00030, PTZ00030, 60S ribosomal protein L20; Pro	5e-14
COG0292	118	COG0292, RplT, Ribosomal protein L20 [Translation,	6e-12
PRK05185	114	PRK05185, rplT, 50S ribosomal protein L20; Provisi	8e-12
TIGR01032	113	TIGR01032, rplT_bact, ribosomal protein L20	2e-10
PRK14537	230	PRK14537, PRK14537, 50S ribosomal protein L20/unkn	4e-07
CHL00068	115	CHL00068, rpl20, ribosomal protein L20	4e-06

>gnl|CDD|197305 cd07026, Ribosomal_L20, Ribosomal protein L20

 Score = 73.3 bits (181), Expect = 2e-17
 Identities = 24/49 (48%), Positives = 33/49 (67%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW  RI A A EHG+ Y  F  GL ++NI+L+RK L+ LA  +P+ FK
Sbjct: 54  RLWITRINAAAREHGLSYSRFIHGLKKANILLNRKVLAQLAILDPKAFK 102

The ribosomal protein family L20 contains members from eubacteria, as well as their mitochondrial and plastid homologs. L20 is an assembly protein, required for the first in-vitro reconstitution step of the 50S ribosomal subunit, but does not seem to be essential for ribosome activity. L20 has been shown to partially unfold in the absence of RNA, in regions corresponding to the RNA-binding sites. L20 represses the translation of its own mRNA via specific binding to two distinct mRNA sites, in a manner similar to the L20 interaction with 23S ribosomal RNA. . Length = 106

>gnl|CDD|201238 pfam00453, Ribosomal_L20, Ribosomal protein L20

 Score = 69.8 bits (172), Expect = 4e-16
 Identities = 24/49 (48%), Positives = 31/49 (63%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW  RI A A EHG+ Y  F  GL ++NI L+RK L+ LA  +P  FK
Sbjct: 58  RLWITRINAAAREHGLSYSRFINGLKKANIELNRKVLAQLAINDPEAFK 106

Length = 108

>gnl|CDD|185406 PTZ00030, PTZ00030, 60S ribosomal protein L20; Provisional

 Score = 65.1 bits (159), Expect = 5e-14
 Identities = 22/50 (44%), Positives = 27/50 (54%)

Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
            W   I A   EH + Y  F  GL  SNI L+RK L++LA  EP +FK 
Sbjct: 50 VHWIQTINAATREHNMTYSRFINGLNNSNIQLNRKILANLAITEPFSFKA 99

Length = 121

>gnl|CDD|223369 COG0292, RplT, Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]

 Score = 59.5 bits (145), Expect = 6e-12
 Identities = 24/49 (48%), Positives = 31/49 (63%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           KLW ARI A A E+G+ Y  F  GL ++ I +DRK L+DLA  +P  F 
Sbjct: 59  KLWIARINAAARENGLSYSRFINGLKKAGIEIDRKVLADLAINDPAAFA 107

Length = 118

>gnl|CDD|179959 PRK05185, rplT, 50S ribosomal protein L20; Provisional

 Score = 58.9 bits (144), Expect = 8e-12
 Identities = 23/49 (46%), Positives = 31/49 (63%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           KLW ARI A A ++G+ Y  F  GL ++ I +DRK L+DLA  +P  F 
Sbjct: 58  KLWIARINAAARQNGLSYSRFINGLKKAGIEIDRKVLADLAVNDPAAFA 106

Length = 114

>gnl|CDD|130104 TIGR01032, rplT_bact, ribosomal protein L20

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
            LW  RI A A +HG+ Y  F  GL ++NI ++RK LS+LA  +P  FK 
Sbjct: 58  SLWITRINAAARQHGLSYSRFINGLKKANIEINRKVLSELAINDPEAFKE 107

This model describes bacterial ribosomal protein L20 and its chloroplast equvalent. This protein binds directly to 23s ribosomal RNA and is necessary for the in vitro assembly process of the 50s ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. GO process changed accordingly (SS 5/09/03) [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 113

>gnl|CDD|237748 PRK14537, PRK14537, 50S ribosomal protein L20/unknown domain fusion protein; Provisional

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
           KLW +RI AGA   G+ Y     GL  + + ++RK LSDLA  +P  F
Sbjct: 59  KLWISRINAGAMLCGIKYSRLMHGLALAKVDINRKVLSDLAHLQPEVF 106

Length = 230

>gnl|CDD|214352 CHL00068, rpl20, ribosomal protein L20

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW  RI A   E+GV Y  F   L ++ I+L+RK L+ +A  +P  F 
Sbjct: 59  RLWITRINAAIRENGVSYSKFIHNLYKNQILLNRKILAQIAILDPNCFY 107

Length = 115

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
COG0292	118	RplT Ribosomal protein L20 [Translation, ribosomal	100.0
PTZ00030	121	60S ribosomal protein L20; Provisional	100.0
PRK05185	114	rplT 50S ribosomal protein L20; Provisional	99.98
TIGR01032	113	rplT_bact ribosomal protein L20. This protein bind	99.98
CHL00068	115	rpl20 ribosomal protein L20	99.97
PRK14537	230	50S ribosomal protein L20/unknown domain fusion pr	99.97
PF00453	108	Ribosomal_L20: Ribosomal protein L20; InterPro: IP	99.97
KOG4707|consensus	147		99.85
KOG1255|consensus	329		91.43

>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.9e-34  Score=223.20  Aligned_cols=72  Identities=33%  Similarity=0.569  Sum_probs=70.5

Q ss_pred             hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHHHHHHHHHHHh
Q psy12837         26 CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMC   97 (184)
Q Consensus        26 yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFksLVd~~k~al~   97 (184)
                      ||||++|||+||+|||+|||||+|++|+|||+||+||+++||.|||||||||||.||.+|.+|++.++.+++
T Consensus        47 YrdRr~rKRdFR~LWI~RINAA~R~~GlsYS~fi~gLkkA~I~inRKvLadlAi~d~~aF~~lv~~aK~al~  118 (118)
T COG0292          47 YRDRRQRKRDFRKLWIARINAAARENGLSYSRFINGLKKAGIEIDRKVLADLAINDPAAFAALVEKAKAALA  118 (118)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHcCchhhHHHHHHHHhcCHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998763

>PTZ00030 60S ribosomal protein L20; Provisional

Probab=100.00  E-value=3.1e-33  Score=219.59  Aligned_cols=80  Identities=29%  Similarity=0.402  Sum_probs=75.3

Q ss_pred             chhhhhhh---------hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHHH
Q psy12837         18 PVWKTSKV---------CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVK   88 (184)
Q Consensus        18 ~~w~~~k~---------yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFksL   88 (184)
                      +.+++|+.         ||||++|||+||+|||+|||||+|++|++||.||++|+++||.||||||||||++||.+|++|
T Consensus        21 ~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~~Ys~fi~~L~k~~i~LNRK~Ls~LAi~dp~sF~~l  100 (121)
T PTZ00030         21 NCFKLARNRVMKALLYSYISRRKRKRILRVHWIQTINAATREHNMTYSRFINGLNNSNIQLNRKILANLAITEPFSFKAL  100 (121)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcHHHHHHHHhcCHHHHHHH
Confidence            45666654         999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy12837         89 KSTVGTTMC   97 (184)
Q Consensus        89 Vd~~k~al~   97 (184)
                      ++.++.++.
T Consensus       101 v~~~k~~l~  109 (121)
T PTZ00030        101 VDESKYQLN  109 (121)
T ss_pred             HHHHHHHhc
Confidence            999998765

>PRK05185 rplT 50S ribosomal protein L20; Provisional

Probab=99.98  E-value=5.6e-33  Score=215.81  Aligned_cols=76  Identities=32%  Similarity=0.562  Sum_probs=72.2

Q ss_pred             chhhhhhh---------hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHHH
Q psy12837         18 PVWKTSKV---------CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVK   88 (184)
Q Consensus        18 ~~w~~~k~---------yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFksL   88 (184)
                      +.+++|+.         ||||++|||+||+|||+|||||+|++|++||.||++|+++||.||||||||||++||.+|++|
T Consensus        29 ~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~~Ys~fi~~L~~~~i~LNRK~La~lAi~dp~~F~~l  108 (114)
T PRK05185         29 RLYRVAKQAVMKALQYAYRDRRQKKRDFRKLWIARINAAARQNGLSYSRFINGLKKAGIEIDRKVLADLAVNDPAAFAAL  108 (114)
T ss_pred             cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHhcCHHHHHHH
Confidence            45666665         999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy12837         89 KSTVG   93 (184)
Q Consensus        89 Vd~~k   93 (184)
                      ++.++
T Consensus       109 v~~~k  113 (114)
T PRK05185        109 VEKAK  113 (114)
T ss_pred             HHHHh
Confidence            99886

>TIGR01032 rplT_bact ribosomal protein L20

Probab=99.98  E-value=7.2e-33  Score=215.09  Aligned_cols=76  Identities=30%  Similarity=0.535  Sum_probs=71.6

Q ss_pred             chhhhhhh---------hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHHH
Q psy12837         18 PVWKTSKV---------CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVK   88 (184)
Q Consensus        18 ~~w~~~k~---------yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFksL   88 (184)
                      +.+++|+.         ||||++|||+||+|||+|||||+|++|++||.||++|+++||.||||||||||++||.+|++|
T Consensus        29 ~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~~Ys~fi~~L~~~~i~LnRKvLa~lAi~dp~~F~~l  108 (113)
T TIGR01032        29 RHYRVAKQTVIKAMAYAYRDRRQRKRDFRSLWITRINAAARQHGLSYSRFINGLKKANIEINRKVLSELAINDPEAFAEI  108 (113)
T ss_pred             cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCccHHHHHHHHhcCHHHHHHH
Confidence            45666665         999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy12837         89 KSTVG   93 (184)
Q Consensus        89 Vd~~k   93 (184)
                      ++.++
T Consensus       109 v~~~k  113 (113)
T TIGR01032       109 VEQAK  113 (113)
T ss_pred             HHHhC
Confidence            99864

This protein binds directly to 23s ribosomal RNA and is necessary for the in vitro assembly process of the 50s ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. GO process changed accordingly

>CHL00068 rpl20 ribosomal protein L20

Probab=99.97  E-value=2.3e-32  Score=212.98  Aligned_cols=76  Identities=26%  Similarity=0.516  Sum_probs=71.5

Q ss_pred             chhhhhhh---------hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHHH
Q psy12837         18 PVWKTSKV---------CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVK   88 (184)
Q Consensus        18 ~~w~~~k~---------yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFksL   88 (184)
                      +.+++|+.         ||||++|||+||+|||+|||||+|++|++||.||++|+++||.||||||||||++||.+|++|
T Consensus        30 ~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~gL~~~~i~LnRKvLa~LAi~dp~~F~~l  109 (115)
T CHL00068         30 RLFRTANQQKMKALVSSYRDRKKKKRDFRRLWITRINAAIRENGVSYSKFIHNLYKNQILLNRKILAQIAILDPNCFYTI  109 (115)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCccHHHHHHHHhcCHHHHHHH
Confidence            45666665         999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy12837         89 KSTVG   93 (184)
Q Consensus        89 Vd~~k   93 (184)
                      ++.+.
T Consensus       110 v~~~~  114 (115)
T CHL00068        110 SNKII  114 (115)
T ss_pred             HHHHh
Confidence            99764

>PRK14537 50S ribosomal protein L20/unknown domain fusion protein; Provisional

Probab=99.97  E-value=2.2e-31  Score=227.56  Aligned_cols=89  Identities=29%  Similarity=0.446  Sum_probs=79.8

Q ss_pred             chhhhhhh---------hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHHH
Q psy12837         18 PVWKTSKV---------CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVK   88 (184)
Q Consensus        18 ~~w~~~k~---------yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFksL   88 (184)
                      +.+++|+.         ||||++|||+||+|||+|||||+|++|++||.||++|+++||.||||||||||++||.+|.+|
T Consensus        30 ~lyR~A~q~V~KAL~YAYrdRK~KKRdFR~LWItRINAAaR~~GlsYS~fI~gLkka~I~LNRKvLAdLAI~Dp~sF~~L  109 (230)
T PRK14537         30 TLYKTAHEQVMRSLQYAYRDRKQRKRDFRKLWISRINAGAMLCGIKYSRLMHGLALAKVDINRKVLSDLAHLQPEVFVQY  109 (230)
T ss_pred             cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCccHHHHHHHHhcCHHHHHHH
Confidence            45666654         999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-hhccccCC
Q psy12837         89 KSTVGTTMCR-IYQFYTKP  106 (184)
Q Consensus        89 Vd~~k~al~~-~~~~~~~p  106 (184)
                      ++.++.++++ ..-|.++|
T Consensus       110 v~~ak~al~~~~~~~~~k~  128 (230)
T PRK14537        110 VELAKKFLSQFQSTTITKP  128 (230)
T ss_pred             HHHHHHHHHHHHHHhccCc
Confidence            9999998854 33345555

>PF00453 Ribosomal_L20: Ribosomal protein L20; InterPro: IPR005813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.97  E-value=1.8e-31  Score=205.42  Aligned_cols=71  Identities=37%  Similarity=0.629  Sum_probs=67.6

Q ss_pred             chhhhhhh---------hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHHH
Q psy12837         18 PVWKTSKV---------CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVK   88 (184)
Q Consensus        18 ~~w~~~k~---------yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFksL   88 (184)
                      +.+++|+.         |+||++|||+||+|||+|||||+|++|++||.||++|+++||.||||||||||++||.+|++|
T Consensus        29 ~~~r~a~q~v~kal~yay~~Rk~kKR~fR~lWI~RINAa~r~~g~~Ys~fi~~L~~~~i~LNRKiLa~LAi~dp~~F~~L  108 (108)
T PF00453_consen   29 NCYRIAKQQVMKALQYAYRDRKLKKRDFRRLWITRINAAAREHGLSYSRFINGLKKANIELNRKILADLAINDPESFKSL  108 (108)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTHHHHHHHHHHCTSSTSCTTGGGHHTSSHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcCcHHHHHHHHhcCHHHHhhC
Confidence            56677765         999999999999999999999999999999999999999999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L20 is a protein from the large (50S) subunit; in Escherichia coli it is known to bind directly to the 23S rRNA, and is required for ribosome assembly, but does not take part in protein synthesis. It belongs to a family of ribosomal proteins, including L20 from eubacteria, plant and alga chloroplasts and cyanelles [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBO_S 3CF5_N 3PIO_N 3PIP_N 2ZJQ_N 2ZJR_N 2ZJP_N 3DLL_N 3KIT_U 2X9U_U ....

>KOG4707|consensus

Probab=99.85  E-value=3e-22  Score=162.43  Aligned_cols=72  Identities=38%  Similarity=0.586  Sum_probs=69.8

Q ss_pred             hhhhchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHHHHHHHHH
Q psy12837         23 SKVCNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGT   94 (184)
Q Consensus        23 ~k~yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFksLVd~~k~   94 (184)
                      ++.++||++|||+||.|||+||||++++||+.||.|+++|.+++|.||||+|||||++||.||.+|++.+++
T Consensus        51 vy~~k~R~~kK~~mr~lwieRv~A~~~e~gv~y~~F~~~L~k~~ilLn~k~Lsqlai~eP~sf~~lv~~~k~  122 (147)
T KOG4707|consen   51 VYATKDRYLKKRDMRTLWIERVNAGAAEHGVRYSPFKHGLHKSPILLNRKVLSQLAIVEPRSFCALVVLSKE  122 (147)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccccccCCccccccchhHHHhhhhhhhCchhhhhHhhccHh
Confidence            345999999999999999999999999999999999999999999999999999999999999999999997

>KOG1255|consensus

Probab=91.43  E-value=0.11  Score=47.28  Aligned_cols=57  Identities=25%  Similarity=0.369  Sum_probs=37.6

Q ss_pred             hhhhhhhhhcccccc-eeeeeeCCCCcccccchhhccchhhhhhhhhcc---cccccccccccCchh
Q psy12837        109 HSCESQVQALDLYSM-KVKFHPLTGTQTCAPLFTRQTLSLTQIAAAKVI---DDEVVGSRHLEQPKY  171 (184)
Q Consensus       109 ~~~~~~~~a~dl~s~-kv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  171 (184)
                      ..+..|..+|.++.. ||+||+|||+|+--  -+.|.+..    .-||+   ...--|..||-+|-+
T Consensus        24 s~y~~T~~nl~ink~TkVi~QGfTGKqgTF--Hs~q~~eY----gTk~VgG~~pkK~Gt~HLG~PVF   84 (329)
T KOG1255|consen   24 SLYNKTISNLKINKDTKVICQGFTGKQGTF--HSQQALEY----GTKVVGGVNPKKGGTTHLGLPVF   84 (329)
T ss_pred             chhhhhhhceeecCCceEEEecccCCccce--eHHHHHHh----CCceeeccCCCcCcccccCchhh
Confidence            357788999999999 99999999999852  12222221    11221   223346789988865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
1nkw_O	118	Crystal Structure Of The Large Ribosomal Subunit Fr		8e-10
1pnu_O	117	Crystal Structure Of A Streptomycin Dependent Ribos		8e-10
2ftc_L	118	Structural Model For The Large Subunit Of The Mamma		3e-09
2j01_U	118	Structure Of The Thermus Thermophilus 70s Ribosome		2e-07
3fin_U	117	T. Thermophilus 70s Ribosome In Complex With Mrna,		3e-07
3mrz_Q	116	Recognition Of The Amber Stop Codon By Release Fact		3e-07
2gya_O	115	Structure Of The 50s Subunit Of A Pre-Translocation		5e-07
1p85_O	117	Real Space Refined Coordinates Of The 50s Subunit F		5e-07
1vs6_Q	118	Crystal Structure Of The Bacterial Ribosome From Es		5e-07
2ghj_A	118	Crystal Structure Of Folded And Partially Unfolded		2e-06
1gyz_A	60	Bacterial Ribosomal Protein L20 From Aquifex Aeolic		4e-06

>pdb|1NKW|O Chain O, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 118

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
           +LW  RI AGA  HG+ Y  F  GL R+NI L+RK L+D+AA EP  FK 
Sbjct: 59  RLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKA 108

>pdb|1PNU|O Chain O, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 117

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
           +LW  RI AGA  HG+ Y  F  GL R+NI L+RK L+D+AA EP  FK 
Sbjct: 58  RLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKA 107

>pdb|2FTC|L Chain L, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 118

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           LW  RITA ++EHG+ YP     L +  + L+RK L+DLA +EP+TFK
Sbjct: 60  LWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFK 107

>pdb|2J01|U Chain U, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 118

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
           LW  RI A   +HG+ Y  F  GL ++ I +DRK L+DLA  EP+ F
Sbjct: 60  LWIVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVF 106

>pdb|3FIN|U Chain U, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 117

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
           LW  RI A   +HG+ Y  F  GL ++ I +DRK L+DLA  EP+ F
Sbjct: 59  LWIVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVF 105

>pdb|3MRZ|Q Chain Q, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 116

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
           LW  RI A   +HG+ Y  F  GL ++ I +DRK L+DLA  EP+ F
Sbjct: 58  LWIVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVF 104

>pdb|2GYA|O Chain O, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 115

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
           LW ARI A A ++G+ Y  F  GL ++++ +DRK L+D+A ++   F
Sbjct: 58  LWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAF 104

>pdb|1P85|O Chain O, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 117

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
           LW ARI A A ++G+ Y  F  GL ++++ +DRK L+D+A ++   F
Sbjct: 59  LWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAF 105

>pdb|1VS6|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 118

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 39  LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
           LW ARI A A ++G+ Y  F  GL ++++ +DRK L+D+A ++   F
Sbjct: 60  LWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAF 106

>pdb|2GHJ|A Chain A, Crystal Structure Of Folded And Partially Unfolded Forms Of Aquifex Aeolicus Ribosomal Protein L20 Length = 118

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW ARI A    +G+ Y  F  GL ++ I LDRK L+D A  +P+ F+
Sbjct: 57  RLWIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADXAVRDPQAFE 105

>pdb|1GYZ|A Chain A, Bacterial Ribosomal Protein L20 From Aquifex Aeolicus Length = 60

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 40 WTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
          W ARI A    +G+ Y  F  GL ++ I LDRK L+D+A  +P+ F+
Sbjct: 1  WIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFE 47

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
2ftc_L	118	MRPL20 protein; mitochondrial ribosome, large ribo	2e-15
2ghj_A	118	50S ribosomal protein L20; folding intermediate, r	9e-14
3r8s_Q	117	50S ribosomal protein L20; protein biosynthesis, R	1e-13
3v2d_U	118	50S ribosomal protein L20; ribosome associated inh	1e-13
2zjr_N	118	50S ribosomal protein L20; ribosome, large ribosom	1e-13
3bbo_S	119	Ribosomal protein L20; large ribosomal subunit, sp	2e-11

>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 118

 Score = 68.0 bits (167), Expect = 2e-15
 Identities = 24/49 (48%), Positives = 33/49 (67%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
            LW  RITA ++EHG+ YP     L +  + L+RK L+DLA +EP+TFK
Sbjct: 59  TLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFK 107

>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A Length = 118

 Score = 63.3 bits (155), Expect = 9e-14
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW ARI A    +G+ Y  F  GL ++ I LDRK L+D+A  +P+ F+
Sbjct: 57  RLWIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFE 105

>3r8s_Q 50S ribosomal protein L20; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q* 2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ... Length = 117

 Score = 63.3 bits (155), Expect = 1e-13
 Identities = 19/49 (38%), Positives = 32/49 (65%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW ARI A A ++G+ Y  F  GL ++++ +DRK L+D+A ++   F 
Sbjct: 58  QLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFT 106

>3v2d_U 50S ribosomal protein L20; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ... Length = 118

 Score = 63.3 bits (155), Expect = 1e-13
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW  RI A   +HG+ Y  F  GL ++ I +DRK L+DLA  EP+ F 
Sbjct: 59  RLWIVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFA 107

>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.144.2.1 PDB: 1nwx_O* 1nwy_O* 1sm1_O* 1xbp_O* 1yl3_1 2b66_U 2b9n_U 2b9p_U 2zjp_N* 2zjq_N 1nkw_O 3cf5_N* 3dll_N* 3pio_N* 3pip_N* 1pnu_O 1pny_O 1vor_R 1vou_R 1vow_R ... Length = 118

 Score = 62.9 bits (154), Expect = 1e-13
 Identities = 27/49 (55%), Positives = 33/49 (67%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW  RI AGA  HG+ Y  F  GL R+NI L+RK L+D+AA EP  FK
Sbjct: 59  RLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFK 107

>3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 119

 Score = 57.2 bits (139), Expect = 2e-11
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 38  KLWTARITAGAEEHGVP--YPLFREGLTRSNIMLDRKTLSDLAAWEPRTF-----KVKK 89
           +LW  RI A   E GV   Y  F   L +  ++L+RK L+ +A   P        ++ K
Sbjct: 59  RLWITRINAAIRERGVYYNYSKFIHDLYKRQLLLNRKILAQIAILNPNCIYMIYNEIIK 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
3r8s_Q	117	50S ribosomal protein L20; protein biosynthesis, R	100.0
2ghj_A	118	50S ribosomal protein L20; folding intermediate, r	100.0
3v2d_U	118	50S ribosomal protein L20; ribosome associated inh	100.0
2zjr_N	118	50S ribosomal protein L20; ribosome, large ribosom	100.0
2ftc_L	118	MRPL20 protein; mitochondrial ribosome, large ribo	100.0
3bbo_S	119	Ribosomal protein L20; large ribosomal subunit, sp	99.97

>3r8s_Q 50S ribosomal protein L20; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q* 2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ...

Probab=100.00  E-value=5.2e-35  Score=227.53  Aligned_cols=80  Identities=25%  Similarity=0.517  Sum_probs=75.5

Q ss_pred             chhhhhhh---------hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHHH
Q psy12837         18 PVWKTSKV---------CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVK   88 (184)
Q Consensus        18 ~~w~~~k~---------yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFksL   88 (184)
                      +.+++|+.         ||||++|||+||+|||+|||||+|++|++||.||++|+++||.||||||||||++||.+|++|
T Consensus        29 ~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~L~k~~i~LNRK~La~lAi~dp~~F~~l  108 (117)
T 3r8s_Q           29 RVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTAL  108 (117)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCcHHHHHHHHHhCHHHHHHH
Confidence            45667665         999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy12837         89 KSTVGTTMC   97 (184)
Q Consensus        89 Vd~~k~al~   97 (184)
                      ++.++++++
T Consensus       109 v~~ak~~~~  117 (117)
T 3r8s_Q          109 VEKAKAALA  117 (117)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999998763

>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A

Probab=100.00  E-value=8.4e-35  Score=226.49  Aligned_cols=80  Identities=29%  Similarity=0.523  Sum_probs=75.9

Q ss_pred             cchhhhhhh---------hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHH
Q psy12837         17 TPVWKTSKV---------CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV   87 (184)
Q Consensus        17 ~~~w~~~k~---------yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFks   87 (184)
                      .+.+++|+.         ||||++|||+||+|||+|||||+|++|++||.||++|+++||.||||||||||++||.+|++
T Consensus        27 s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYS~fi~gL~k~~I~LNRKvLA~lAi~dp~~F~~  106 (118)
T 2ghj_A           27 SRSYRRAKEAVMRALYYQYRDRKLRKREFRRLWIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQ  106 (118)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHTTTTCCCCHHHHHHHHHHCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHhCHHHHHH
Confidence            356777765         99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy12837         88 KKSTVGTTM   96 (184)
Q Consensus        88 LVd~~k~al   96 (184)
                      |++.++.++
T Consensus       107 lv~~ak~~l  115 (118)
T 2ghj_A          107 VVNKVKEAL  115 (118)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999877

>3v2d_U 50S ribosomal protein L20; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ...

Probab=100.00  E-value=6.2e-35  Score=227.37  Aligned_cols=79  Identities=28%  Similarity=0.516  Sum_probs=75.2

Q ss_pred             chhhhhhh---------hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHHH
Q psy12837         18 PVWKTSKV---------CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVK   88 (184)
Q Consensus        18 ~~w~~~k~---------yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFksL   88 (184)
                      +.+++|+.         ||||++|||+||+|||+|||||+|++|++||.||++|+++||.||||||||||++||.+|++|
T Consensus        30 ~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~gL~k~~i~LNRK~La~lAi~dp~~F~~l  109 (118)
T 3v2d_U           30 KSFRKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAEL  109 (118)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCCCCHHHHHHHHHHCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCcHHHHHHHHHhCHHHHHHH
Confidence            46777765         999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy12837         89 KSTVGTTM   96 (184)
Q Consensus        89 Vd~~k~al   96 (184)
                      ++.+++++
T Consensus       110 v~~ak~~~  117 (118)
T 3v2d_U          110 VERAKAAQ  117 (118)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhc
Confidence            99999865

>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.144.2.1 PDB: 1nwx_O* 1nwy_O* 1sm1_O* 1xbp_O* 1yl3_1 2b66_U 2b9n_U 2b9p_U 2zjp_N* 2zjq_N 1nkw_O 3cf5_N* 3dll_N* 3pio_N* 3pip_N* 1pnu_O 1pny_O 1vor_R 1vou_R 1vow_R ...

Probab=100.00  E-value=2.2e-34  Score=224.13  Aligned_cols=78  Identities=36%  Similarity=0.591  Sum_probs=73.5

Q ss_pred             cchhhhhhh---------hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHH
Q psy12837         17 TPVWKTSKV---------CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV   87 (184)
Q Consensus        17 ~~~w~~~k~---------yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFks   87 (184)
                      .+.+++|+.         ||||++|||+||+|||+|||||+|++|+|||.||++|+++||.||||||||||++||.+|++
T Consensus        29 s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYS~fi~gL~k~~I~LNRKvLA~lAi~dp~~F~~  108 (118)
T 2zjr_N           29 SKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKA  108 (118)
T ss_dssp             GTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHCTTCCCCSSHHHHHHHCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHcCHHHHHH
Confidence            356777765         99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy12837         88 KKSTVGT   94 (184)
Q Consensus        88 LVd~~k~   94 (184)
                      |++.++.
T Consensus       109 lv~~ak~  115 (118)
T 2zjr_N          109 LVDASRN  115 (118)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9999875

>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=7.8e-34  Score=221.17  Aligned_cols=78  Identities=31%  Similarity=0.555  Sum_probs=73.2

Q ss_pred             cchhhhhhh---------hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHH
Q psy12837         17 TPVWKTSKV---------CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV   87 (184)
Q Consensus        17 ~~~w~~~k~---------yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFks   87 (184)
                      .+.+++|+.         ||||++|||+||+|||+|||||+|++|++||.||++|+++||.|||||||||||+||.+|++
T Consensus        29 s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~sYs~fi~~L~k~~I~LNRKvLa~lAi~dp~~F~~  108 (118)
T 2ftc_L           29 NRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKS  108 (118)
T ss_pred             cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHcCHHHHHH
Confidence            356677665         99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy12837         88 KKSTVGT   94 (184)
Q Consensus        88 LVd~~k~   94 (184)
                      |++.++.
T Consensus       109 lv~~ak~  115 (118)
T 2ftc_L          109 LAALASR  115 (118)
T ss_pred             HHHHHHh
Confidence            9998874

>3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.97  E-value=3.1e-33  Score=218.10  Aligned_cols=77  Identities=23%  Similarity=0.394  Sum_probs=73.2

Q ss_pred             chhhhhhh---------hchhhhhhhhhHHHHHHHHHhhhccCCC--ChHHHHHHHHHCCcccchhHHHHHHhcChhHHH
Q psy12837         18 PVWKTSKV---------CNEEINLTGHIGKLWTARITAGAEEHGV--PYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK   86 (184)
Q Consensus        18 ~~w~~~k~---------yRDRKkKKRdFRrLWItRINAAaRe~Gi--sYSkFI~gLkksnI~LNRKILAqLAI~DP~SFk   86 (184)
                      +.+++|+.         ||||++|||+||+|||+|||||+|++|+  +||.||++|+++||.||||||||||++||.+|.
T Consensus        30 ~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~gl~~sYs~fi~~L~k~~I~LNRKvLa~lAi~dp~~F~  109 (119)
T 3bbo_S           30 RLTRTIAQQKIRALVSAHRDRDRQKRDFRRLWITRINAAIRERGVYYNYSKFIHDLYKRQLLLNRKILAQIAILNPNCIY  109 (119)
T ss_dssp             SSHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCSCHHHHHHHHHHHTCCCSCSSGGGGTTSCTTTTT
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCccHHHHHHHHHhCHHHHH
Confidence            56677765         9999999999999999999999999999  999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy12837         87 VKKSTVGT   94 (184)
Q Consensus        87 sLVd~~k~   94 (184)
                      +|++.++.
T Consensus       110 ~l~~~~k~  117 (119)
T 3bbo_S          110 MIYNEIIK  117 (119)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d1gyza_	60	a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeol	2e-18
d2zjrn1	117	a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinoco	1e-16
d2j01u1	117	a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus	5e-15
d2gyco1	115	a.144.2.1 (O:2-116) Ribosomal protein L20 {Escheri	6e-15

>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus [TaxId: 63363]} Length = 60

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Aquifex aeolicus [TaxId: 63363]

 Score = 72.7 bits (179), Expect = 2e-18
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 40 WTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
          W ARI A    +G+ Y  F  GL ++ I LDRK L+D+A  +P+ F+
Sbjct: 1  WIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFE 47

>d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus radiodurans [TaxId: 1299]} Length = 117

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 69.7 bits (171), Expect = 1e-16
 Identities = 27/49 (55%), Positives = 33/49 (67%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW  RI AGA  HG+ Y  F  GL R+NI L+RK L+D+AA EP  FK
Sbjct: 58  RLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFK 106

>d2j01u1 a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus thermophilus [TaxId: 274]} Length = 117

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Thermus thermophilus [TaxId: 274]

 Score = 65.4 bits (160), Expect = 5e-15
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW  RI A   +HG+ Y  F  GL ++ I +DRK L+DLA  EP+ F 
Sbjct: 58  RLWIVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFA 106

>d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia coli [TaxId: 562]} Length = 115

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Escherichia coli [TaxId: 562]

 Score = 65.5 bits (160), Expect = 6e-15
 Identities = 19/49 (38%), Positives = 32/49 (65%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW ARI A A ++G+ Y  F  GL ++++ +DRK L+D+A ++   F 
Sbjct: 57  QLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFT 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d2zjrn1	117	Ribosomal protein L20 {Deinococcus radiodurans [Ta	100.0
d2j01u1	117	Ribosomal protein L20 {Thermus thermophilus [TaxId	99.98
d2gyco1	115	Ribosomal protein L20 {Escherichia coli [TaxId: 56	99.96
d1gyza_	60	Ribosomal protein L20 {Aquifex aeolicus [TaxId: 63	99.94

>d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus radiodurans [TaxId: 1299]}

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=2.6e-34  Score=221.59  Aligned_cols=79  Identities=35%  Similarity=0.573  Sum_probs=74.4

Q ss_pred             chhhhhhh---------hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHHH
Q psy12837         18 PVWKTSKV---------CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVK   88 (184)
Q Consensus        18 ~~w~~~k~---------yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFksL   88 (184)
                      +.+++|+.         ||||++|||+||+|||+|||||+|++|++||.||++|+++||.||||||||||++||.+|++|
T Consensus        29 ~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~gl~YS~fi~~L~~~~I~LnRK~Ls~lAi~dp~~F~~l  108 (117)
T d2zjrn1          29 KQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKAL  108 (117)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHCTTCCCCSSHHHHHHHCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCcHHHHHHHHhcCHHHHHHH
Confidence            45666665         999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy12837         89 KSTVGTTM   96 (184)
Q Consensus        89 Vd~~k~al   96 (184)
                      |+.+++++
T Consensus       109 v~~aK~a~  116 (117)
T d2zjrn1         109 VDASRNAR  116 (117)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHHhc
Confidence            99999765

>d2j01u1 a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Thermus thermophilus [TaxId: 274]

Probab=99.98  E-value=9.5e-34  Score=218.32  Aligned_cols=71  Identities=31%  Similarity=0.542  Sum_probs=69.9

Q ss_pred             hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHHHHHHHHHHH
Q psy12837         26 CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTM   96 (184)
Q Consensus        26 yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFksLVd~~k~al   96 (184)
                      ||||++|||+||+|||+|||||+|++|++||.||++|+++||.||||||||||++||.+|++||+.+++++
T Consensus        46 yrdRk~kKr~fR~LWI~RINAa~r~~glsYS~fi~~L~k~~I~LnRKvLs~lAi~dp~~F~~lv~~~k~~~  116 (117)
T d2j01u1          46 YAHRKRRKRDFRRLWIVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAAQ  116 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHTTCCSCSCTTTTTTTTSSHHHHHHHHHHHHHHT
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhCCcccHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875

>d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.1e-34  Score=219.13  Aligned_cols=71  Identities=27%  Similarity=0.553  Sum_probs=68.9

Q ss_pred             hchhhhhhhhhHHHHHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHHHHHHHHHHH
Q psy12837         26 CNEEINLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTM   96 (184)
Q Consensus        26 yRDRKkKKRdFRrLWItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFksLVd~~k~al   96 (184)
                      ||||+.|||+||+|||+|||||+|++|++||.||++|+++||.||||||||||++||.+|++||+.++++|
T Consensus        45 ~rdRk~kKr~fR~LWI~RINAA~r~~gl~Ys~fi~~L~k~~I~LnRKvLs~lAi~dp~~F~~lv~~aK~~l  115 (115)
T d2gyco1          45 YRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAAL  115 (115)
T ss_dssp             TTCCTTSTTTGGGSSSSSHHHHSSSSSCCGGGTSTTTTTSSSCCCSSSTTSSSSSCSSSSSTTTTTTTSCC
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCcCcHHHHHHHHhhCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999887653

>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.94  E-value=1.9e-28  Score=170.29  Aligned_cols=59  Identities=36%  Similarity=0.625  Sum_probs=57.5

Q ss_pred             HHHHHHhhhccCCCChHHHHHHHHHCCcccchhHHHHHHhcChhHHHHHHHHHHHHHhh
Q psy12837         40 WTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMCR   98 (184)
Q Consensus        40 WItRINAAaRe~GisYSkFI~gLkksnI~LNRKILAqLAI~DP~SFksLVd~~k~al~~   98 (184)
                      ||+|||||+|++|++||+||++|++++|.||||||||||++||++|++|++.+++++..
T Consensus         1 WI~RINAa~r~~g~~YS~fi~~L~k~~I~LnRK~La~LAi~dp~~F~~lv~~~k~~l~~   59 (60)
T d1gyza_           1 WIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEALQV   59 (60)
T ss_dssp             CCHHHHHHHTTTTCCSHHHHHHHHHHTCCCCSSSSHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHhCCCHHHHHHHHHHcCCCCcHHHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999998863