Psyllid ID: psy1285

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MVTKPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQLGT
Secondary Structure (PSIPRED)
cEEEEEccccccEEEEEccccccccccEEEEcccccccEEEEEEcccccEEEEccccccEEEEEccccccccccccccEEEEEEEEcccccccccccccccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEcccccccccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEEccccccccccccccccccEEEccccccccccccccccEEEEEccccHHccccc
Coil and Loop (DISEMBL)
MVTKPQVASLVTCFVwdrrtlnettakpvgvlaghrdgitfidpkgdsrhlisnskdqtiKLWDvrkfngaanskdqtiKLWDVRKFSNKTAQRNTFRAVCEQNWEYRrenvprqlgt
Flexible Loop (DISEMBL)
mvtkpqvaslvtcfvwdrrtlnettakpvgvlaghrDGITFidpkgdsrhlisnskdqtiklwdvrkfngaanskdqtiklwdvrkfsnktaqrntfravceqnweyrrenvprqlgt
Low Complexity Region (SEG)
MVTKPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQLGT
Disordered region (IsUnstruct)
******VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY***********
Disordered Region (DISOPRED)
MVTKPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGA*NSKDQTIKLWDVRKFSNKTA**NTFRAVCEQNWEYRRENVPRQL**
Disordered Region (DISEMBL)
MVTKPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRE********
Disordered Region (DISPRO)
******VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTKPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQLGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q8TEB1	546	DDB1- and CUL4-associated	yes	N/A	0.711	0.153	0.504	9e-24
Q5E9I8	546	DDB1- and CUL4-associated	yes	N/A	0.711	0.153	0.504	9e-24
Q5R7H5	546	DDB1- and CUL4-associated	yes	N/A	0.711	0.153	0.504	1e-23
Q5M9G8	549	DDB1- and CUL4-associated	yes	N/A	0.711	0.153	0.504	2e-23
Q91VU6	549	DDB1- and CUL4-associated	yes	N/A	0.703	0.151	0.509	3e-23
Q40153	473	LEC14B protein OS=Lithosp	N/A	N/A	0.610	0.152	0.554	1e-16
P90794	571	DDB1- and CUL4-associated	yes	N/A	0.703	0.145	0.421	5e-16
A8XEN7	554	DDB1- and CUL4-associated	N/A	N/A	0.703	0.149	0.411	3e-15
O24467	475	LEC14B homolog OS=Prunus	N/A	N/A	0.5	0.124	0.566	2e-14
Q3ULA2	605	F-box/WD repeat-containin	no	N/A	0.601	0.117	0.313	0.0002

>sp|Q8TEB1|DCA11_HUMAN DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1

 Score =  108 bits (270), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 19/103 (18%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKL          
Sbjct: 332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKL---------- 381

Query: 73  NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQ 115
                    WD+R+FS++     + +A  +QNW+YR + VP++
Sbjct: 382 ---------WDIRRFSSREGMEASRQAATQQNWDYRWQQVPKK 415

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.
Homo sapiens (taxid: 9606)

>sp|Q5E9I8|DCA11_BOVIN DDB1- and CUL4-associated factor 11 OS=Bos taurus GN=DCAF11 PE=2 SV=1

 Score =  108 bits (270), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 19/103 (18%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKL          
Sbjct: 332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKL---------- 381

Query: 73  NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQ 115
                    WD+R+FS++     + +A  +QNW+YR + VP++
Sbjct: 382 ---------WDIRRFSSREGMEASRQAATQQNWDYRWQQVPKK 415

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Bos taurus (taxid: 9913)

>sp|Q5R7H5|DCA11_PONAB DDB1- and CUL4-associated factor 11 OS=Pongo abelii GN=DCAF11 PE=2 SV=2

 Score =  108 bits (270), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 19/103 (18%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKL          
Sbjct: 332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKL---------- 381

Query: 73  NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQ 115
                    WD+R+FS++     + +A  +QNW+YR + VP++
Sbjct: 382 ---------WDIRRFSSREGMEASRQAATQQNWDYRWQQVPKK 415

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q5M9G8|DCA11_RAT DDB1- and CUL4-associated factor 11 OS=Rattus norvegicus GN=Dcaf11 PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 19/103 (18%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKL          
Sbjct: 332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKL---------- 381

Query: 73  NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQ 115
                    WD+R+FS++     +  A  +QNW+YR + VP++
Sbjct: 382 ---------WDIRRFSSREGMEASRLAATQQNWDYRWQQVPKK 415

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q91VU6|DCA11_MOUSE DDB1- and CUL4-associated factor 11 OS=Mus musculus GN=Dcaf11 PE=1 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 65/102 (63%), Gaps = 19/102 (18%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKL          
Sbjct: 332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKL---------- 381

Query: 73  NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPR 114
                    WD+R+FS++     +  A  +QNW+YR + VP+
Sbjct: 382 ---------WDIRRFSSREGMEASRLAATQQNWDYRWQQVPK 414

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|Q40153|LE14B_LITER LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/74 (55%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWDRR  N    KP G+L GH +GITFID +GD R+ ISN KDQTIKLWD+RK +  A
Sbjct: 281 CKVWDRRCFN-AKGKPAGILMGHLEGITFIDSRGDGRYFISNGKDQTIKLWDIRKMSSNA 339

Query: 73  NSKDQTIKL-WDVR 85
               Q+    WD R
Sbjct: 340 GGTIQSRNSEWDYR 353

Lithospermum erythrorhizon (taxid: 34254)

>sp|P90794|DCA11_CAEEL DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis elegans GN=wdr-23 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 19/102 (18%)

Query: 15  VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANS 74
           VWD+R  ++   +PVGV AGHRDG+T +D + D R+L+SNSKDQTIK+            
Sbjct: 338 VWDKRAWSDGDVEPVGVFAGHRDGVTHVDSRQDERYLLSNSKDQTIKV------------ 385

Query: 75  KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQL 116
                  WD+RKFSN +    T   V  Q+W+YR +  P  L
Sbjct: 386 -------WDLRKFSNMSGVEATRACVQSQHWDYRWQPAPPGL 420

Involved in regulation of lifespan.

Caenorhabditis elegans (taxid: 6239)

>sp|A8XEN7|DCA11_CAEBR DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis briggsae GN=wdr-23 PE=3 SV=2

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 19/102 (18%)

Query: 15  VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANS 74
           VWD+R  ++    PVGV AGHRDG+T++D + D R+L+SNSKDQTIK+            
Sbjct: 317 VWDKRAWSDGDVIPVGVFAGHRDGVTYVDSRQDERYLLSNSKDQTIKV------------ 364

Query: 75  KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQL 116
                  WD+RKFS +     T   V  Q+W+YR +  P  L
Sbjct: 365 -------WDLRKFSCQGGVEATRACVQSQHWDYRWQPAPPGL 399

Involved in regulation of lifespan.

Caenorhabditis briggsae (taxid: 6238)

>sp|O24467|LE14B_PRUAR LEC14B homolog OS=Prunus armeniaca PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWDRR  N    +P GVL GH +G+TFID +GD R+ ISN KDQT +LWD+RK +  A
Sbjct: 279 CKVWDRRCFNHK-GQPAGVLMGHLEGVTFIDSRGDGRYFISNGKDQTTQLWDIRKMSSRA 337

Prunus armeniaca (taxid: 36596)

>sp|Q3ULA2|FBW1A_MOUSE F-box/WD repeat-containing protein 1A OS=Mus musculus GN=Btrc PE=1 SV=2

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 31/102 (30%)

Query: 10  LVTC------FVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLW 63
           +VTC       VWD  +  + T + V  L GHR  +  +D   D ++++S S D+TIK+W
Sbjct: 396 MVTCSKDRSIAVWDMASPTDITLRRV--LVGHRAAVNVVD--FDDKYIVSASGDRTIKVW 451

Query: 64  D------VRKFNG---------------AANSKDQTIKLWDV 84
           +      VR  NG                + S D TI+LWD+
Sbjct: 452 NTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 493

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Recognizes and binds to phosphorylated target proteins. SCF(BTRC) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. SCF(BTRC) mediates the ubiquitination of NFKBIA, NFKBIB and NFKBIE; the degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. Ubiquitination of NFKBIA occurs at 'Lys-21' and 'Lys-22'. SCF(BTRC) mediates the ubiquitination of phosphorylated NFKB1/nuclear factor NF-kappa-B p105 subunit, ATF4, SMAD3, SMAD4, CDC25A, DLG1, FBXO5 and probably NFKB2. SCF(BTRC) mediates the ubiquitination of phosphorylated SNAI1. May be involved in ubiquitination and subsequent proteasomal degradation through a DBB1-CUL4 E3 ubiquitin-protein ligase. Required for activation of NFKB-mediated transcription by IL1B, MAP3K14, MAP3K1, IKBKB and TNF. Required for proteolytic processing of GLI3.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
383855244	538	PREDICTED: LOW QUALITY PROTEIN: DDB1- an	0.720	0.157	0.567	4e-26
350396904	603	PREDICTED: LOW QUALITY PROTEIN: DDB1- an	0.720	0.140	0.557	2e-25
380019172	504	PREDICTED: DDB1- and CUL4-associated fac	0.711	0.166	0.553	7e-25
444728831	911	DDB1- and CUL4-associated factor 11 [Tup	0.711	0.092	0.504	4e-23
91078846	445	PREDICTED: similar to WD repeat domain 2	0.720	0.191	0.538	4e-23
270004129	425	hypothetical protein TcasGA2_TC003447 [T	0.720	0.2	0.538	4e-23
307192566	493	WD repeat-containing protein 23 [Harpegn	0.720	0.172	0.528	8e-23
351700489	546	WD repeat-containing protein 23 [Heteroc	0.711	0.153	0.514	9e-23
354479836	546	PREDICTED: DDB1- and CUL4-associated fac	0.711	0.153	0.504	2e-22
417411195	496	Putative ddb1- and cul4-associated facto	0.711	0.169	0.504	2e-22

>gi|383855244|ref|XP_003703126.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 11-like [Megachile rotundata]

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/104 (56%), Positives = 70/104 (67%), Gaps = 19/104 (18%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWDRRTLNET   PVGVLAGH DGIT+IDP+GD R+LI+NSKDQTIKLW         
Sbjct: 316 CKVWDRRTLNETDPHPVGVLAGHMDGITYIDPRGDGRYLITNSKDQTIKLW--------- 366

Query: 73  NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQL 116
                     DVR FS+   +RNT +AV  QNW+YR + VP++L
Sbjct: 367 ----------DVRAFSDHNGERNTRKAVANQNWDYRWQKVPKRL 400

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396904|ref|XP_003484706.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 11-like [Bombus impatiens]

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/104 (55%), Positives = 70/104 (67%), Gaps = 19/104 (18%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWDRRTLNET   PVGVLAGH DGIT+IDP+GD R+LI+NSKDQTIKLW         
Sbjct: 378 CKVWDRRTLNETDPHPVGVLAGHMDGITYIDPRGDGRYLITNSKDQTIKLW--------- 428

Query: 73  NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQL 116
                     DVR FS+   ++NT +AV  QNW+YR + VP++L
Sbjct: 429 ----------DVRAFSDHNGEQNTRKAVANQNWDYRWQRVPKRL 462

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019172|ref|XP_003693488.1| PREDICTED: DDB1- and CUL4-associated factor 11-like [Apis florea]

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 69/103 (66%), Gaps = 19/103 (18%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWDRRTLNET   PVGVLAGH DGIT+IDP+GD R+LI+NSKDQTIKLW         
Sbjct: 285 CKVWDRRTLNETDPHPVGVLAGHMDGITYIDPRGDGRYLITNSKDQTIKLW--------- 335

Query: 73  NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQ 115
                     DVR FS+   ++NT +AV  QNW+YR + VP++
Sbjct: 336 ----------DVRAFSDHNGEQNTRKAVANQNWDYRWQRVPKR 368

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|444728831|gb|ELW69273.1| DDB1- and CUL4-associated factor 11 [Tupaia chinensis]

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 19/103 (18%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKLW         
Sbjct: 332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLW--------- 382

Query: 73  NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQ 115
                     D+R+FS++     + +A  +QNW+YR + VP++
Sbjct: 383 ----------DIRRFSSREGMEASRQAATQQNWDYRWQQVPKK 415

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91078846|ref|XP_971729.1| PREDICTED: similar to WD repeat domain 23 [Tribolium castaneum]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 69/104 (66%), Gaps = 19/104 (18%)

Query: 15  VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANS 74
           VWDRRTL+E++ KPVG LAGH DGITFID +GD RHLISNSKDQ+IKLWDVR F+G    
Sbjct: 220 VWDRRTLDESSVKPVGKLAGHMDGITFIDSRGDGRHLISNSKDQSIKLWDVRIFSG---- 275

Query: 75  KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQLGT 118
                          + A   + +AV EQ W+YR + VP++L T
Sbjct: 276 ---------------ERAAEKSLKAVHEQTWDYRWQQVPKRLFT 304

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004129|gb|EFA00577.1| hypothetical protein TcasGA2_TC003447 [Tribolium castaneum]

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 69/104 (66%), Gaps = 19/104 (18%)

Query: 15  VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANS 74
           VWDRRTL+E++ KPVG LAGH DGITFID +GD RHLISNSKDQ+IKLWDVR F+G    
Sbjct: 200 VWDRRTLDESSVKPVGKLAGHMDGITFIDSRGDGRHLISNSKDQSIKLWDVRIFSG---- 255

Query: 75  KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQLGT 118
                          + A   + +AV EQ W+YR + VP++L T
Sbjct: 256 ---------------ERAAEKSLKAVHEQTWDYRWQQVPKRLFT 284

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192566|gb|EFN75754.1| WD repeat-containing protein 23 [Harpegnathos saltator]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 69/104 (66%), Gaps = 19/104 (18%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWD+RTL ET  +PVGVLAGH DGIT+ID +GDSR+LI+N KDQTIKLWDVR F+G  
Sbjct: 266 CKVWDKRTLTETDPRPVGVLAGHMDGITYIDSRGDSRYLITNCKDQTIKLWDVRVFSG-- 323

Query: 73  NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQL 116
                            +  + NT +AV  QNW+YR + VP++L
Sbjct: 324 -----------------EIGKMNTRKAVSSQNWDYRWQPVPKRL 350

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|351700489|gb|EHB03408.1| WD repeat-containing protein 23 [Heterocephalus glaber]

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 67/103 (65%), Gaps = 19/103 (18%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKL          
Sbjct: 332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKL---------- 381

Query: 73  NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQ 115
                    WD+R+FSN+     + +A  +QNW+YR + VP++
Sbjct: 382 ---------WDIRRFSNREGMEASRQAATQQNWDYRWQQVPKK 415

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354479836|ref|XP_003502115.1| PREDICTED: DDB1- and CUL4-associated factor 11-like [Cricetulus griseus] gi|344255458|gb|EGW11562.1| WD repeat-containing protein 23 [Cricetulus griseus]

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 19/103 (18%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKL          
Sbjct: 332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKL---------- 381

Query: 73  NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQ 115
                    WD+R+FS++     + +A  +QNW+YR + VP++
Sbjct: 382 ---------WDIRRFSSREGMEASRQAATQQNWDYRWQQVPKK 415

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|417411195|gb|JAA52043.1| Putative ddb1- and cul4-associated factor 11, partial [Desmodus rotundus]

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 19/103 (18%)

Query: 13  CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
           C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKL          
Sbjct: 283 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKL---------- 332

Query: 73  NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQ 115
                    WD+R+FS++     + +A  +QNW+YR + VP++
Sbjct: 333 ---------WDIRRFSSREGMEASRQAAIQQNWDYRWQQVPKK 366

Source: Desmodus rotundus

Species: Desmodus rotundus

Genus: Desmodus

Family: Phyllostomidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
UNIPROTKB|F1MVT2	546	DCAF11 "DDB1- and CUL4-associa	0.618	0.133	0.623	1.9e-20
UNIPROTKB|Q5E9I8	546	DCAF11 "DDB1- and CUL4-associa	0.618	0.133	0.623	1.9e-20
UNIPROTKB|Q8TEB1	546	DCAF11 "DDB1- and CUL4-associa	0.618	0.133	0.623	1.9e-20
UNIPROTKB|Q5R7H5	546	DCAF11 "DDB1- and CUL4-associa	0.618	0.133	0.623	1.9e-20
UNIPROTKB|F1SGL8	546	DCAF11 "Uncharacterized protei	0.618	0.133	0.623	2.4e-20
ZFIN|ZDB-GENE-050809-116	541	dcaf11 "ddb1 and cul4 associat	0.618	0.134	0.675	3.9e-20
RGD|1311288	549	Dcaf11 "DDB1 and CUL4 associat	0.618	0.132	0.623	4.1e-20
MGI|MGI:90168	549	Dcaf11 "DDB1 and CUL4 associat	0.618	0.132	0.623	4.1e-20
TAIR|locus:2139335	493	AT4G03020 "AT4G03020" [Arabido	0.872	0.208	0.424	7.3e-17
UNIPROTKB|A8XEN7	554	wdr-23 "DDB1- and CUL4-associa	0.601	0.128	0.493	4e-15

UNIPROTKB|F1MVT2 DCAF11 "DDB1- and CUL4-associated factor 11" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 48/77 (62%), Positives = 58/77 (75%)

Query:    13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGA- 71
             C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKLWD+R+F+   
Sbjct:   332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSRE 391

Query:    72 ---ANSKDQTIKLWDVR 85
                A+ +  T + WD R
Sbjct:   392 GMEASRQAATQQNWDYR 408

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

UNIPROTKB|Q5E9I8 DCAF11 "DDB1- and CUL4-associated factor 11" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 48/77 (62%), Positives = 58/77 (75%)

Query:    13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGA- 71
             C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKLWD+R+F+   
Sbjct:   332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSRE 391

Query:    72 ---ANSKDQTIKLWDVR 85
                A+ +  T + WD R
Sbjct:   392 GMEASRQAATQQNWDYR 408

GO:0016567 "protein ubiquitination" evidence=IEA

UNIPROTKB|Q8TEB1 DCAF11 "DDB1- and CUL4-associated factor 11" [Homo sapiens (taxid:9606)]

 Score = 249 (92.7 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 48/77 (62%), Positives = 58/77 (75%)

Query:    13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGA- 71
             C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKLWD+R+F+   
Sbjct:   332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSRE 391

Query:    72 ---ANSKDQTIKLWDVR 85
                A+ +  T + WD R
Sbjct:   392 GMEASRQAATQQNWDYR 408

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5R7H5 DCAF11 "DDB1- and CUL4-associated factor 11" [Pongo abelii (taxid:9601)]

 Score = 249 (92.7 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 48/77 (62%), Positives = 58/77 (75%)

Query:    13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGA- 71
             C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKLWD+R+F+   
Sbjct:   332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSRE 391

Query:    72 ---ANSKDQTIKLWDVR 85
                A+ +  T + WD R
Sbjct:   392 GMEASRQAATQQNWDYR 408

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|F1SGL8 DCAF11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 248 (92.4 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 48/77 (62%), Positives = 58/77 (75%)

Query:    13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGA- 71
             C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKLWD+R+F+   
Sbjct:   332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSRE 391

Query:    72 ---ANSKDQTIKLWDVR 85
                A+ +  T + WD R
Sbjct:   392 GMEASRQAATQQDWDYR 408

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

ZFIN|ZDB-GENE-050809-116 dcaf11 "ddb1 and cul4 associated factor 11" [Danio rerio (taxid:7955)]

 Score = 246 (91.7 bits), Expect = 3.9e-20, P = 3.9e-20
 Identities = 52/77 (67%), Positives = 58/77 (75%)

Query:    13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN--- 69
             C VWDRRTL E   +PVG LAGHRDGITFI  KGD+R+LISNSKDQTIKLWDVRKF+   
Sbjct:   336 CKVWDRRTLREDRPQPVGHLAGHRDGITFIHSKGDARYLISNSKDQTIKLWDVRKFSPKE 395

Query:    70 GAANSK-DQTIKLWDVR 85
             G A S+   T + WD R
Sbjct:   396 GLAASRLAVTQQNWDYR 412

GO:0003824 "catalytic activity" evidence=IEA

RGD|1311288 Dcaf11 "DDB1 and CUL4 associated factor 11" [Rattus norvegicus (taxid:10116)]

 Score = 246 (91.7 bits), Expect = 4.1e-20, P = 4.1e-20
 Identities = 48/77 (62%), Positives = 57/77 (74%)

Query:    13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGA- 71
             C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKLWD+R+F+   
Sbjct:   332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSRE 391

Query:    72 ---ANSKDQTIKLWDVR 85
                A+    T + WD R
Sbjct:   392 GMEASRLAATQQNWDYR 408

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO;ISS

MGI|MGI:90168 Dcaf11 "DDB1 and CUL4 associated factor 11" [Mus musculus (taxid:10090)]

 Score = 246 (91.7 bits), Expect = 4.1e-20, P = 4.1e-20
 Identities = 48/77 (62%), Positives = 57/77 (74%)

Query:    13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGA- 71
             C VWDRRT+ E   KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKLWD+R+F+   
Sbjct:   332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSRE 391

Query:    72 ---ANSKDQTIKLWDVR 85
                A+    T + WD R
Sbjct:   392 GMEASRLAATQQNWDYR 408

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

TAIR|locus:2139335 AT4G03020 "AT4G03020" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 7.3e-17, P = 7.3e-17
 Identities = 45/106 (42%), Positives = 62/106 (58%)

Query:    13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
             C VWDRR       KP GVL GH +G+TFID +GD R+ ISN KDQTIKLWD+RK + +A
Sbjct:   296 CKVWDRRCFIGRD-KPAGVLVGHLEGVTFIDSRGDGRYFISNGKDQTIKLWDIRKMSSSA 354

Query:    73 NSKDQTIKL--WDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQL 116
              ++ + ++   WD R     T  R+    + +    Y+  +V R L
Sbjct:   355 PARHEVLRNYEWDYRWMDYPTEARDLKHPLDQSVSTYKGHSVLRTL 400

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|A8XEN7 wdr-23 "DDB1- and CUL4-associated factor 11 homolog" [Caenorhabditis briggsae (taxid:6238)]

 Score = 200 (75.5 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 37/75 (49%), Positives = 52/75 (69%)

Query:    15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN--GAA 72
             VWD+R  ++    PVGV AGHRDG+T++D + D R+L+SNSKDQTIK+WD+RKF+  G  
Sbjct:   317 VWDKRAWSDGDVIPVGVFAGHRDGVTYVDSRQDERYLLSNSKDQTIKVWDLRKFSCQGGV 376

Query:    73 NSKDQTIKL--WDVR 85
              +    ++   WD R
Sbjct:   377 EATRACVQSQHWDYR 391

GO:0008340 "determination of adult lifespan" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5E9I8	DCA11_BOVIN	No assigned EC number	0.5048	0.7118	0.1538	yes	N/A
Q8TEB1	DCA11_HUMAN	No assigned EC number	0.5048	0.7118	0.1538	yes	N/A
Q5R7H5	DCA11_PONAB	No assigned EC number	0.5048	0.7118	0.1538	yes	N/A
Q91VU6	DCA11_MOUSE	No assigned EC number	0.5098	0.7033	0.1511	yes	N/A
Q5M9G8	DCA11_RAT	No assigned EC number	0.5048	0.7118	0.1530	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	118
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-06
smart00320	40	smart00320, WD40, WD40 repeats	4e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 28/100 (28%)

Query: 12  TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------V 65
           T  VWD  T      K +  L GH D +  +    D   + S+S+D TIKLWD      V
Sbjct: 116 TIKVWDVET-----GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170

Query: 66  RKFNG-----------------AANSKDQTIKLWDVRKFS 88
               G                  ++S D TIKLWD+    
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 28/98 (28%)

Query: 14  FVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF----- 68
            +WD RT      K V  L GH   +  +    D   L+S+S D TIKLWD+        
Sbjct: 160 KLWDLRTG-----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214

Query: 69  ----NGAANS--------------KDQTIKLWDVRKFS 88
                   NS              +D TI++WD+R   
Sbjct: 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 28/100 (28%)

Query: 12  TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN-- 69
           T  +WD  T      + V  L GH   ++ +    D R L S+S+D+TIK+WDV      
Sbjct: 74  TIRLWDLETG-----ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL 128

Query: 70  ---------------------GAANSKDQTIKLWDVRKFS 88
                                 A++S+D TIKLWD+R   
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 28/106 (26%)

Query: 12  TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------V 65
           T  VWD       T + +  L GH   +  +    D  +L S S D+TI+LWD      V
Sbjct: 32  TIKVWDL-----ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86

Query: 66  RKFNG-----------------AANSKDQTIKLWDVRKFSNKTAQR 94
           R   G                 +++S+D+TIK+WDV      T  R
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 2e-06
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 27 KPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
          K +  L GH   +T +    D   L S S D T+++WD
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 23/82 (28%)

Query: 28 PVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG----------- 70
              L GH  G+T +    D + L + S D TIK+WD+      R   G           
Sbjct: 1  LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 71 ------AANSKDQTIKLWDVRK 86
                A+ S D+TI+LWD+  
Sbjct: 61 ADGTYLASGSSDKTIRLWDLET 82

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 4e-06
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 25 TAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
          + + +  L GH   +T +    D ++L S S D TIKLWD
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 12  TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
           T  VWD RT      + V  L+GH + +T +    D + L S S D TI++WD
Sbjct: 242 TIRVWDLRT-----GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 29/105 (27%)

Query: 12  TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLI-SNSKDQTIKLWDVRK--- 67
           T  +WD RT      KP+  LAGH D ++ +    D   LI S S D TI+LWD+     
Sbjct: 179 TIKLWDLRT-----GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 68  ----FNG----------------AANSKDQTIKLWDVRKFSNKTA 92
                +G                A+ S D TI+LWD+R  S+   
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR 278

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 12  TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
           T  +WD R+ +      +  L+GH   +  +    D + L S S D T++LWD+  
Sbjct: 264 TIRLWDLRSSS----SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 29/119 (24%)

Query: 12  TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNS-KDQTIKLWDVRK--- 67
           T  +WD  T      K +  L GH + +T +    D + L S S  D TIKLWD+R    
Sbjct: 135 TVKLWDLSTPG----KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190

Query: 68  ---FNG------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNW 105
                G                  A+ S D TI+LWD+       +  +        ++
Sbjct: 191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
KOG0271|consensus	480		99.87
KOG0272|consensus	459		99.83
KOG0279|consensus	315		99.83
KOG0284|consensus	464		99.82
KOG0272|consensus	459		99.81
KOG0271|consensus	480		99.78
KOG0277|consensus	311		99.77
KOG0266|consensus	456		99.75
KOG0263|consensus	707		99.75
KOG0285|consensus	460		99.74
KOG0286|consensus	343		99.72
KOG0264|consensus	422		99.72
KOG0263|consensus	707		99.72
KOG0276|consensus	794		99.72
KOG0319|consensus	775		99.71
KOG0279|consensus	315		99.71
KOG0277|consensus	311		99.7
KOG0264|consensus	422		99.7
KOG0285|consensus	460		99.69
KOG0281|consensus	499		99.69
KOG0284|consensus	464		99.69
PTZ00421	493	coronin; Provisional	99.68
KOG0286|consensus	343		99.67
KOG0292|consensus	1202		99.67
KOG0319|consensus	775		99.66
KOG0315|consensus	311		99.65
KOG0273|consensus	524		99.65
KOG0269|consensus	839		99.64
KOG0266|consensus	456		99.64
KOG0315|consensus	311		99.63
KOG0281|consensus	499		99.63
PTZ00420	568	coronin; Provisional	99.63
KOG0291|consensus	893		99.62
PLN00181	793	protein SPA1-RELATED; Provisional	99.62
KOG0270|consensus	463		99.61
PTZ00421	493	coronin; Provisional	99.61
KOG0265|consensus	338		99.61
KOG0313|consensus	423		99.61
KOG0282|consensus	503		99.6
KOG0269|consensus	839		99.6
KOG0295|consensus	406		99.6
KOG0316|consensus	307		99.6
KOG0276|consensus	794		99.59
KOG1332|consensus	299		99.58
KOG0647|consensus	347		99.58
KOG0302|consensus	440		99.57
KOG0302|consensus	440		99.57
KOG0310|consensus	487		99.56
PTZ00420	568	coronin; Provisional	99.56
KOG0295|consensus	406		99.55
KOG1446|consensus	311		99.55
KOG0316|consensus	307		99.55
KOG0273|consensus	524		99.54
KOG0293|consensus	519		99.54
KOG0318|consensus	603		99.52
KOG0772|consensus	641		99.52
KOG0305|consensus	484		99.52
KOG0283|consensus	712		99.52
KOG0645|consensus	312		99.52
KOG0292|consensus	1202		99.51
KOG0274|consensus	537		99.51
KOG0265|consensus	338		99.5
KOG0275|consensus	508		99.48
KOG0643|consensus	327		99.47
KOG1407|consensus	313		99.47
KOG0288|consensus	459		99.47
KOG0300|consensus	481		99.46
KOG0308|consensus	735		99.46
KOG0306|consensus	888		99.46
KOG0310|consensus	487		99.46
KOG1009|consensus	434		99.44
KOG0282|consensus	503		99.44
KOG0267|consensus	825		99.43
PLN00181	793	protein SPA1-RELATED; Provisional	99.43
KOG0291|consensus	893		99.42
KOG0267|consensus	825		99.41
KOG1273|consensus	405		99.41
KOG0313|consensus	423		99.4
KOG0647|consensus	347		99.4
KOG0274|consensus	537		99.39
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.38
KOG0296|consensus	399		99.38
KOG0275|consensus	508		99.38
KOG1036|consensus	323		99.38
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.37
KOG0772|consensus	641		99.37
KOG0278|consensus	334		99.37
KOG0289|consensus	506		99.36
KOG4378|consensus	673		99.36
KOG0307|consensus	1049		99.36
KOG0973|consensus	942		99.35
KOG0283|consensus	712		99.35
KOG0321|consensus	720		99.34
KOG0300|consensus	481		99.34
KOG0303|consensus	472		99.34
KOG0278|consensus	334		99.34
KOG0289|consensus	506		99.33
KOG0640|consensus	430		99.33
KOG0639|consensus	705		99.32
KOG0642|consensus	577		99.32
KOG0296|consensus	399		99.31
KOG0268|consensus	433		99.31
KOG0306|consensus	888		99.3
KOG0294|consensus	362		99.3
KOG0645|consensus	312		99.29
KOG0771|consensus	398		99.28
KOG0646|consensus	476		99.27
KOG0305|consensus	484		99.26
KOG0308|consensus	735		99.26
KOG0318|consensus	603		99.26
KOG0294|consensus	362		99.25
KOG0649|consensus	325		99.25
KOG1188|consensus	376		99.23
KOG1007|consensus	370		99.23
KOG0641|consensus	350		99.22
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.22
KOG0268|consensus	433		99.21
KOG0290|consensus	364		99.21
KOG2096|consensus	420		99.2
KOG0303|consensus	472		99.2
KOG1034|consensus	385		99.2
KOG2445|consensus	361		99.2
KOG0973|consensus	942		99.2
KOG1007|consensus	370		99.18
KOG1445|consensus	1012		99.18
KOG0646|consensus	476		99.18
KOG0299|consensus	479		99.17
KOG1034|consensus	385		99.16
KOG4378|consensus	673		99.16
KOG4283|consensus	397		99.15
KOG4283|consensus	397		99.15
KOG1036|consensus	323		99.14
KOG1445|consensus	1012		99.13
KOG0639|consensus	705		99.13
KOG2394|consensus	636		99.13
KOG0293|consensus	519		99.13
KOG0301|consensus	745		99.12
KOG1408|consensus	1080		99.1
KOG2919|consensus	406		99.1
KOG1407|consensus	313		99.1
KOG0299|consensus	479		99.09
KOG4328|consensus	498		99.08
KOG1272|consensus	545		99.08
KOG0270|consensus	463		99.05
KOG0641|consensus	350		99.04
KOG1188|consensus	376		99.04
KOG1274|consensus	933		99.04
KOG4328|consensus	498		99.03
KOG1332|consensus	299		99.02
KOG2048|consensus	691		99.01
KOG2110|consensus	391		99.0
KOG2445|consensus	361		98.98
KOG0301|consensus	745		98.98
KOG0643|consensus	327		98.98
KOG0640|consensus	430		98.96
KOG2111|consensus	346		98.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.95
KOG1538|consensus	1081		98.95
KOG1273|consensus	405		98.94
KOG1063|consensus	764		98.94
KOG0288|consensus	459		98.91
KOG2096|consensus	420		98.9
KOG1446|consensus	311		98.88
KOG0642|consensus	577		98.88
KOG2695|consensus	425		98.86
KOG0321|consensus	720		98.84
KOG0322|consensus	323		98.82
KOG1310|consensus	758		98.8
KOG0644|consensus	1113		98.77
KOG0307|consensus	1049		98.74
KOG1524|consensus	737		98.73
KOG0290|consensus	364		98.71
KOG2055|consensus	514		98.71
KOG1539|consensus	910		98.7
KOG0322|consensus	323		98.69
KOG1240|consensus	1431		98.68
KOG3914|consensus	390		98.68
KOG2048|consensus	691		98.66
KOG0644|consensus	1113		98.64
KOG1310|consensus	758		98.64
KOG4227|consensus	609		98.64
KOG0280|consensus	339		98.64
KOG2394|consensus	636		98.63
KOG1587|consensus	555		98.6
KOG1517|consensus	1387		98.58
KOG1063|consensus	764		98.58
KOG1587|consensus	555		98.56
KOG2106|consensus	626		98.56
KOG1408|consensus	1080		98.53
KOG1272|consensus	545		98.53
KOG2106|consensus	626		98.53
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.52
KOG1539|consensus	910		98.52
KOG2055|consensus	514		98.49
KOG1064|consensus	2439		98.47
COG2319	466	FOG: WD40 repeat [General function prediction only	98.45
KOG2111|consensus	346		98.43
KOG1274|consensus	933		98.43
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.41
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.4
KOG0974|consensus	967		98.4
KOG3881|consensus	412		98.38
KOG0974|consensus	967		98.36
KOG2919|consensus	406		98.35
KOG0650|consensus	733		98.32
KOG1517|consensus	1387		98.28
KOG0650|consensus	733		98.28
COG2319	466	FOG: WD40 repeat [General function prediction only	98.27
KOG0649|consensus	325		98.27
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.26
KOG1009|consensus	434		98.23
PRK01742	429	tolB translocation protein TolB; Provisional	98.19
KOG4532|consensus	344		98.18
KOG4190|consensus	1034		98.17
KOG4547|consensus	541		98.16
KOG2321|consensus	703		98.14
KOG1240|consensus	1431		98.14
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.13
KOG1524|consensus	737		98.09
KOG2695|consensus	425		98.09
KOG2110|consensus	391		98.04
KOG2321|consensus	703		98.02
KOG3914|consensus	390		97.93
KOG0882|consensus	558		97.92
KOG1523|consensus	361		97.91
KOG1354|consensus	433		97.89
KOG1409|consensus	404		97.88
KOG2139|consensus	445		97.88
KOG4714|consensus	319		97.85
KOG0309|consensus	1081		97.84
KOG4497|consensus	447		97.78
KOG1523|consensus	361		97.78
KOG0280|consensus	339		97.73
KOG4714|consensus	319		97.72
KOG1409|consensus	404		97.71
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.71
PRK05137	435	tolB translocation protein TolB; Provisional	97.71
KOG4227|consensus	609		97.69
KOG0771|consensus	398		97.67
PRK01742	429	tolB translocation protein TolB; Provisional	97.66
KOG1963|consensus	792		97.66
PRK02889	427	tolB translocation protein TolB; Provisional	97.63
KOG2139|consensus	445		97.62
KOG1275|consensus	1118		97.62
KOG0309|consensus	1081		97.55
PRK04922	433	tolB translocation protein TolB; Provisional	97.51
KOG3881|consensus	412		97.42
KOG4640|consensus	665		97.31
KOG1645|consensus	463		97.26
KOG1334|consensus	559		97.26
KOG1645|consensus	463		97.24
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.21
KOG1064|consensus	2439		97.16
KOG1008|consensus	783		97.14
KOG1963|consensus	792		97.12
KOG2315|consensus	566		97.09
PRK03629	429	tolB translocation protein TolB; Provisional	97.07
KOG1354|consensus	433		96.99
PRK05137	435	tolB translocation protein TolB; Provisional	96.94
KOG4190|consensus	1034		96.91
KOG4532|consensus	344		96.9
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	96.87
PRK11028	330	6-phosphogluconolactonase; Provisional	96.84
KOG1912|consensus	1062		96.81
PRK03629	429	tolB translocation protein TolB; Provisional	96.75
KOG4547|consensus	541		96.75
KOG1334|consensus	559		96.72
KOG1538|consensus	1081		96.69
PRK11028	330	6-phosphogluconolactonase; Provisional	96.59
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.55
KOG2315|consensus	566		96.48
PRK02889	427	tolB translocation protein TolB; Provisional	96.46
KOG4497|consensus	447		96.44
PRK01029	428	tolB translocation protein TolB; Provisional	96.4
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.37
PRK00178	430	tolB translocation protein TolB; Provisional	96.36
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.31
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.23
PRK04922	433	tolB translocation protein TolB; Provisional	96.13
PRK04792	448	tolB translocation protein TolB; Provisional	96.06
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.94
KOG2079|consensus	1206		95.88
COG4946	668	Uncharacterized protein related to the periplasmic	95.85
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	95.81
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.31
KOG2041|consensus	1189		95.15
KOG1832|consensus	1516		95.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	94.95
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	94.85
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	94.81
PRK00178	430	tolB translocation protein TolB; Provisional	94.74
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	94.54
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.53
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.46
KOG2066|consensus	846		94.38
KOG0882|consensus	558		94.32
COG4946	668	Uncharacterized protein related to the periplasmic	94.12
KOG1912|consensus	1062		93.93
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.93
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	93.69
KOG2041|consensus	1189		93.52
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	93.5
PRK04792	448	tolB translocation protein TolB; Provisional	93.46
PRK02888	635	nitrous-oxide reductase; Validated	93.25
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	93.07
KOG1275|consensus	1118		93.04
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	92.67
PRK01029	428	tolB translocation protein TolB; Provisional	92.34
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	92.34
KOG3617|consensus	1416		92.24
KOG2066|consensus	846		92.06
KOG2395|consensus	644		92.01
KOG2444|consensus	238		91.81
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	91.73
KOG2314|consensus	698		91.48
KOG3621|consensus	726		91.37
KOG2444|consensus	238		91.15
KOG4640|consensus	665		90.75
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	89.47
KOG1008|consensus	783		89.41
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	89.18
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	88.83
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	88.05
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	87.49
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	86.96
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	86.92
KOG2395|consensus	644		85.86
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	85.24
KOG2314|consensus	698		84.7
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	84.48
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	84.19
KOG3621|consensus	726		84.01
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	83.89
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	83.49
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	82.66
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	82.22
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	82.22
KOG2079|consensus	1206		81.61
KOG2377|consensus	657		81.38
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	80.27

>KOG0271|consensus

Probab=99.87  E-value=7.9e-22  Score=130.11  Aligned_cols=96  Identities=25%  Similarity=0.422  Sum_probs=89.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +.+.|.++|+||+.+     ..|..+.++|...|.|++|+|||..+|+|+.||+|++||..+..+               
T Consensus       132 tGsGD~TvR~WD~~T-----eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~L  206 (480)
T KOG0271|consen  132 TGSGDTTVRLWDLDT-----ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITAL  206 (480)
T ss_pred             ecCCCceEEeeccCC-----CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEE
Confidence            778899999999998     789999999999999999999999999999999999999887554               


Q ss_pred             --------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 --------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                                    ++++.|+.|+|||+..+.++..+.+|..+|+++.|-
T Consensus       207 awep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG  256 (480)
T KOG0271|consen  207 AWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG  256 (480)
T ss_pred             eecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc
Confidence                          788899999999999999999999999999999995

>KOG0272|consensus

Probab=99.83  E-value=2e-20  Score=124.33  Aligned_cols=99  Identities=27%  Similarity=0.348  Sum_probs=91.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      |.+.|..-||||+++     +..+..+.+|..+|+++.|+|+|-+||+|+.|++++|||++.-..               
T Consensus       320 tGGlD~~~RvWDlRt-----gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk  394 (459)
T KOG0272|consen  320 TGGLDSLGRVWDLRT-----GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVK  394 (459)
T ss_pred             ccCccchhheeeccc-----CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheE
Confidence            788899999999998     888999999999999999999999999999999999999986443               


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeec
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  109 (118)
                               ++++.|++++||..++..+.+.+.+|.+.|.+++++..-
T Consensus       395 ~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~  442 (459)
T KOG0272|consen  395 YSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS  442 (459)
T ss_pred             ecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence                     889999999999999999999999999999998887654

>KOG0279|consensus

Probab=99.83  E-value=4.7e-20  Score=117.40  Aligned_cols=101  Identities=24%  Similarity=0.320  Sum_probs=90.4

Q ss_pred             CCcccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           3 TKPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         3 ~~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      |+.+++.|+++|+||+..     +++.+.|.+|...|.+++|++|.+.+++|+.|++|++||......            
T Consensus        77 ~alS~swD~~lrlWDl~~-----g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WV  151 (315)
T KOG0279|consen   77 FALSASWDGTLRLWDLAT-----GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWV  151 (315)
T ss_pred             eEEeccccceEEEEEecC-----CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcE
Confidence            456899999999999987     788899999999999999999999999999999999999864211            


Q ss_pred             --------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                    ++++.|++|++||+++.+....+.+|...++.+..++.
T Consensus       152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD  203 (315)
T KOG0279|consen  152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD  203 (315)
T ss_pred             EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCC
Confidence                          78899999999999999999999999998988877653

>KOG0284|consensus

Probab=99.82  E-value=2.6e-20  Score=123.54  Aligned_cols=105  Identities=29%  Similarity=0.374  Sum_probs=95.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ++|.||+|+|||...     .+....+.+|.-.|.+++|+|...++++++.|+.|++||.++.++               
T Consensus       197 t~SdDg~ikiWdf~~-----~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~  271 (464)
T KOG0284|consen  197 TCSDDGTIKIWDFRM-----PKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK  271 (464)
T ss_pred             EecCCCeEEEEeccC-----CchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence            899999999999987     566666799999999999999999999999999999999999776               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccCccc
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQ  115 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  115 (118)
                              +++|.|..++++|+|+.+.+..+.+|+..|.++.|++-++.+...
T Consensus       272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lfts  324 (464)
T KOG0284|consen  272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTS  324 (464)
T ss_pred             EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceee
Confidence                    889999999999999999888888999999999999988876543

>KOG0272|consensus

Probab=99.81  E-value=2e-20  Score=124.38  Aligned_cols=99  Identities=18%  Similarity=0.271  Sum_probs=92.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||++++|++..     ..++..+.+|..+|..++|+|+|++|++++.|.+-++||+++...               
T Consensus       236 t~s~Dgtvklw~~~~-----e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ia  310 (459)
T KOG0272|consen  236 TASADGTVKLWKLSQ-----ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIA  310 (459)
T ss_pred             eeccCCceeeeccCC-----CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeE
Confidence            789999999999987     688999999999999999999999999999999999999998543               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeec
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  109 (118)
                              ++|+.|..=+|||+|+++++..+.+|..+|..+.|+++=
T Consensus       311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG  357 (459)
T KOG0272|consen  311 FQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG  357 (459)
T ss_pred             ecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCc
Confidence                    788999999999999999999999999999999998753

>KOG0271|consensus

Probab=99.78  E-value=1.3e-18  Score=115.05  Aligned_cols=99  Identities=29%  Similarity=0.453  Sum_probs=90.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|.++.+|+....    .+++....+|+..|+.+.||||++++|+++-|++|++||-+++..               
T Consensus       341 SgsDd~tlflW~p~~~----kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva  416 (480)
T KOG0271|consen  341 SGSDDFTLFLWNPFKS----KKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA  416 (480)
T ss_pred             EecCCceEEEeccccc----ccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence            6788999999998762    568888899999999999999999999999999999999987653               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                              ++||.|.+++||++++.+....+++|.++|..+.|++.
T Consensus       417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD  462 (480)
T KOG0271|consen  417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD  462 (480)
T ss_pred             eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence                    78999999999999999999999999999999999865

>KOG0277|consensus

Probab=99.77  E-value=1.5e-18  Score=109.64  Aligned_cols=105  Identities=26%  Similarity=0.360  Sum_probs=90.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +|+.||.+||||...+    ..|++.+++|...|.++.|++ ..+.+++++.|++||+|+...+..              
T Consensus        78 ~a~GDGSLrl~d~~~~----s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a  153 (311)
T KOG0277|consen   78 AASGDGSLRLFDLTMP----SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQA  153 (311)
T ss_pred             EEecCceEEEeccCCC----CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEE
Confidence            7899999999997653    678999999999999999998 566778889999999999875443              


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccCcc
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPR  114 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  114 (118)
                                +++|.|+++++||+|.+-....++.|..++.++.|+...+.+.+
T Consensus       154 ~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~  207 (311)
T KOG0277|consen  154 AFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLA  207 (311)
T ss_pred             ecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEE
Confidence                      78889999999999999887788899989999999987776543

>KOG0266|consensus

Probab=99.75  E-value=1.7e-17  Score=115.30  Aligned_cols=100  Identities=25%  Similarity=0.358  Sum_probs=82.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|+++||||+..    ....++++.+|...|++++|+|+++.+++|+.|++|++||+++...               
T Consensus       220 s~s~D~tiriwd~~~----~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~  295 (456)
T KOG0266|consen  220 SGSDDKTLRIWDLKD----DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLA  295 (456)
T ss_pred             EecCCceEEEeeccC----CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEE
Confidence            788999999999944    2578889999999999999999999999999999999999998544               


Q ss_pred             --------cceecCCcEEEEeCCCCc--ceeeecccCc--ceeeEeeeeec
Q psy1285          71 --------AANSKDQTIKLWDVRKFS--NKTAQRNTFR--AVCEQNWEYRR  109 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~--~~~~~~~~~~--~v~~~~~~~~~  109 (118)
                              ++++.|+.|++||+.++.  ....+..+..  +++.+.|++.-
T Consensus       296 f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~  346 (456)
T KOG0266|consen  296 FSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG  346 (456)
T ss_pred             ECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC
Confidence                    677889999999999999  3444443433  47777776443

>KOG0263|consensus

Probab=99.75  E-value=3.6e-18  Score=120.22  Aligned_cols=100  Identities=23%  Similarity=0.410  Sum_probs=92.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      |+|.|++.++|....     ..|.+.+.+|.+.|.|+.|+|+.+++++||.|.+|++||+.++..               
T Consensus       510 tas~D~tArLWs~d~-----~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~  584 (707)
T KOG0263|consen  510 TASHDQTARLWSTDH-----NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALA  584 (707)
T ss_pred             ecCCCceeeeeeccc-----CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEE
Confidence            899999999999987     788888999999999999999999999999999999999987654               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecc
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                              ++|+.|+.|++||+.+++....+.+|.+.+.++.|+++-.
T Consensus       585 ~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~  632 (707)
T KOG0263|consen  585 FSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN  632 (707)
T ss_pred             EcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC
Confidence                    8899999999999999999999999999999988876544

>KOG0285|consensus

Probab=99.74  E-value=2.1e-17  Score=108.75  Aligned_cols=102  Identities=21%  Similarity=0.300  Sum_probs=92.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +.+.|++++|||+.+     +++..++.+|...|..+++|+-..++.+++.|+.|+.||+.....               
T Consensus       168 tgs~DrtikIwDlat-----g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~  242 (460)
T KOG0285|consen  168 TGSADRTIKIWDLAT-----GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLD  242 (460)
T ss_pred             ecCCCceeEEEEccc-----CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEe
Confidence            788999999999998     788889999999999999999889999999999999999986543               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccC
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  112 (118)
                              ++|+.|.++|+||+|+...+..+.+|..+|..+...+.-+++
T Consensus       243 lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqv  292 (460)
T KOG0285|consen  243 LHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQV  292 (460)
T ss_pred             ccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCce
Confidence                    789999999999999999999999999999988887655543

>KOG0286|consensus

Probab=99.72  E-value=8.3e-17  Score=103.42  Aligned_cols=98  Identities=24%  Similarity=0.402  Sum_probs=85.6

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      .|.|.|.++-+||+.+     ++....+.+|.+.|.+++++| +++.+++|+.|++.+|||+|...+             
T Consensus       160 lT~SGD~TCalWDie~-----g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINs  234 (343)
T KOG0286|consen  160 LTGSGDMTCALWDIET-----GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINS  234 (343)
T ss_pred             EecCCCceEEEEEccc-----ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccce
Confidence            4889999999999998     888999999999999999999 899999999999999999998654             


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeec--ccCcceeeEeeee
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQR--NTFRAVCEQNWEY  107 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~  107 (118)
                                ++|+.|++.|+||+|....+..+.  ....+|+++.|+.
T Consensus       235 v~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  235 VRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK  283 (343)
T ss_pred             EEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence                      889999999999999988876654  3334677777764

>KOG0264|consensus

Probab=99.72  E-value=3.8e-17  Score=109.33  Aligned_cols=104  Identities=22%  Similarity=0.443  Sum_probs=85.1

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      ..++.|+.+.|||+|..   ..++.+...+|.+.++|++|+| ++..||+|+.|++|+|||+|+...             
T Consensus       244 ~sv~dd~~L~iwD~R~~---~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~  320 (422)
T KOG0264|consen  244 GSVGDDGKLMIWDTRSN---TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVF  320 (422)
T ss_pred             eeecCCCeEEEEEcCCC---CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceE
Confidence            38899999999999961   3677777889999999999999 677899999999999999998654             


Q ss_pred             ------------cceecCCcEEEEeCCCCccee------------ee--cccCcceeeEeeeeeccc
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSNKT------------AQ--RNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~~~------------~~--~~~~~~v~~~~~~~~~~~  111 (118)
                                  ++++.|+.+.|||+..-....            -|  -+|...|+.+.|++..+=
T Consensus       321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW  387 (422)
T KOG0264|consen  321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW  387 (422)
T ss_pred             EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence                        777789999999986543332            13  278888999999877653

>KOG0263|consensus

Probab=99.72  E-value=7.7e-17  Score=113.62  Aligned_cols=97  Identities=20%  Similarity=0.246  Sum_probs=88.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ++|.|+++|+|.+.+     ...+-.+++|..+|.++.|+|-|-++|+++.|++.++|.......               
T Consensus       468 ScSED~svRLWsl~t-----~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~  542 (707)
T KOG0263|consen  468 SCSEDSSVRLWSLDT-----WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVS  542 (707)
T ss_pred             eccCCcceeeeeccc-----ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEE
Confidence            889999999999997     666777889999999999999999999999999999998865433               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                              ++||.|.+||+||+.++.....|.+|.++|..+.+++
T Consensus       543 FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp  587 (707)
T KOG0263|consen  543 FHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP  587 (707)
T ss_pred             ECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC
Confidence                    8999999999999999999999999999999988876

>KOG0276|consensus

Probab=99.72  E-value=3.1e-17  Score=114.03  Aligned_cols=103  Identities=19%  Similarity=0.236  Sum_probs=93.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +.|.|-+|++||-...    -.+.+++.+|...|++++|+| |.+.+++++-|++|++|.+-++.+              
T Consensus       114 tsSDDm~iKlW~we~~----wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~V  189 (794)
T KOG0276|consen  114 TSSDDMTIKLWDWENE----WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCV  189 (794)
T ss_pred             ecCCccEEEEeeccCc----eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceE
Confidence            8899999999999863    567789999999999999999 778999999999999999976543              


Q ss_pred             -----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccC
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  112 (118)
                                 ++|++|.+|+|||..+.+++..+++|...|+.+.|++.++-+
T Consensus       190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii  242 (794)
T KOG0276|consen  190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII  242 (794)
T ss_pred             EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence                       899999999999999999999999999999999998887764

>KOG0319|consensus

Probab=99.71  E-value=4.5e-17  Score=114.48  Aligned_cols=98  Identities=23%  Similarity=0.459  Sum_probs=87.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      |+|.|.+.+||++..     .....++.+|...|.|+.|+|....++++|.|++|++|.+.++.+               
T Consensus       480 T~SqDktaKiW~le~-----~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~  554 (775)
T KOG0319|consen  480 TGSQDKTAKIWDLEQ-----LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS  554 (775)
T ss_pred             ecccccceeeecccC-----ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee
Confidence            899999999999986     788999999999999999999999999999999999999998776               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccC
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  112 (118)
                              ++++.||.|++|++++..+...+..|.+.|    |.+...+.
T Consensus       555 F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Drv----WaL~~~~~  600 (775)
T KOG0319|consen  555 FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRV----WALSVSPL  600 (775)
T ss_pred             eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcccee----EEEeecCc
Confidence                    788999999999999999999988887654    54444443

>KOG0279|consensus

Probab=99.71  E-value=2e-16  Score=101.00  Aligned_cols=105  Identities=20%  Similarity=0.255  Sum_probs=87.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecC--ccCcEEEEEeCCC--CCeEEEeeCCCcEEEEecCCCCc-----------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAG--HRDGITFIDPKGD--SRHLISNSKDQTIKLWDVRKFNG-----------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~-----------   70 (118)
                      +.+.|.++++|++..      ....++..  +.+.|.|++|+|+  ...+++++.|+++++||+++.+.           
T Consensus       122 SGSrDkTiklwnt~g------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v  195 (315)
T KOG0279|consen  122 SGSRDKTIKLWNTLG------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV  195 (315)
T ss_pred             cCCCcceeeeeeecc------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE
Confidence            788999999999974      44444443  3788999999996  67899999999999999998654           


Q ss_pred             ------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccCccccC
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQLG  117 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  117 (118)
                                  ++|+.||.+.+||++..+....+. +...|..++|++++.-+.+-.+
T Consensus       196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~  253 (315)
T KOG0279|consen  196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATA  253 (315)
T ss_pred             EEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccC
Confidence                        788999999999999999977775 7778999999998877655443

>KOG0277|consensus

Probab=99.70  E-value=1.2e-16  Score=101.07  Aligned_cols=102  Identities=23%  Similarity=0.298  Sum_probs=86.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +-|=|++||+|+...     ...+.++.+|...|+...|+| ..+++++++.|+++++||++..-.              
T Consensus       122 tsSWD~TiKLW~~~r-----~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~c  196 (311)
T KOG0277|consen  122 TSSWDGTIKLWDPNR-----PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCC  196 (311)
T ss_pred             eeccCCceEeecCCC-----CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEee
Confidence            336699999999987     788999999999999999999 678999999999999999986422              


Q ss_pred             ----------cceecCCcEEEEeCCCCccee-eecccCcceeeEeeeeecccC
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKT-AQRNTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~  112 (118)
                                ++|+.|+.|+.||+|+.+.+. .+.+|.-.|..+.|++....+
T Consensus       197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l  249 (311)
T KOG0277|consen  197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL  249 (311)
T ss_pred             cccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence                      889999999999999988665 445787788888887765544

>KOG0264|consensus

Probab=99.70  E-value=1.5e-16  Score=106.54  Aligned_cols=112  Identities=22%  Similarity=0.373  Sum_probs=94.3

Q ss_pred             ccccCceEEEEeCCCCCCC--CCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCC--Cc----------
Q psy1285           6 QVASLVTCFVWDRRTLNET--TAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKF--NG----------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~--~~----------   70 (118)
                      +++.|++|.+||++.....  ...+...+.+|...|..++|++ +...+++++.|+.+.|||.|+.  ..          
T Consensus       195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~  274 (422)
T KOG0264|consen  195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE  274 (422)
T ss_pred             eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence            7889999999999864332  2345667889999999999998 6778999999999999999952  11          


Q ss_pred             --------------cceecCCcEEEEeCCCCcc-eeeecccCcceeeEeeeeecccCccccC
Q psy1285          71 --------------AANSKDQTIKLWDVRKFSN-KTAQRNTFRAVCEQNWEYRRENVPRQLG  117 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~  117 (118)
                                    ++|+.|++|.+||+|+... +..++.|...|.++.|++.+.++.+--|
T Consensus       275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg  336 (422)
T KOG0264|consen  275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG  336 (422)
T ss_pred             eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc
Confidence                          8899999999999999976 4577899999999999999998876544

>KOG0285|consensus

Probab=99.69  E-value=7.9e-17  Score=106.06  Aligned_cols=102  Identities=22%  Similarity=0.365  Sum_probs=91.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++.|++|+-||+..     .+.++.+.+|.+.|+|++..|.-..|++|+.|.++++||+|+...               
T Consensus       210 s~gedk~VKCwDLe~-----nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~  284 (460)
T KOG0285|consen  210 SAGEDKQVKCWDLEY-----NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM  284 (460)
T ss_pred             EecCCCeeEEEechh-----hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence            788999999999987     788888999999999999999999999999999999999997543               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccC
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  112 (118)
                              ++||.|++|++||++.++....+..|...|..+..+++...+
T Consensus       285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~f  334 (460)
T KOG0285|consen  285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLF  334 (460)
T ss_pred             eecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhh
Confidence                    789999999999999999998888898888888887766554

>KOG0281|consensus

Probab=99.69  E-value=5.3e-17  Score=106.77  Aligned_cols=79  Identities=30%  Similarity=0.512  Sum_probs=71.3

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      .+||.|.++++|++.+     .+.+.++.+|+..|.|+.+.  ++++++|+.|.+|++||+..+.+              
T Consensus       334 VsASgDRTikvW~~st-----~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRci  406 (499)
T KOG0281|consen  334 VSASGDRTIKVWSTST-----CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI  406 (499)
T ss_pred             EEecCCceEEEEeccc-----eeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhhe
Confidence            4899999999999998     78899999999999999776  89999999999999999998765              


Q ss_pred             -------cceecCCcEEEEeCCCCcce
Q psy1285          71 -------AANSKDQTIKLWDVRKFSNK   90 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~~~   90 (118)
                             ++|++||+|++||+.....+
T Consensus       407 RFd~krIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  407 RFDNKRIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             eecCceeeeccccceEEEEecccccCC
Confidence                   89999999999999776554

>KOG0284|consensus

Probab=99.69  E-value=3.8e-17  Score=108.69  Aligned_cols=98  Identities=23%  Similarity=0.325  Sum_probs=85.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCcc-CcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHR-DGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      ++..+|.|++|+.+.      ..++.+++|. ..|.+++|+|....+++++.||+|+|||......              
T Consensus       155 SgD~gG~iKyWqpnm------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv  228 (464)
T KOG0284|consen  155 SGDKGGMIKYWQPNM------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV  228 (464)
T ss_pred             EcCCCceEEecccch------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence            667789999999984      4444455555 8999999999989999999999999999987543              


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeec
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  109 (118)
                               ++|+.|..|++||.|+++++..+-.|++.|..+.|++..
T Consensus       229 dWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~  276 (464)
T KOG0284|consen  229 DWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG  276 (464)
T ss_pred             ccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC
Confidence                     889999999999999999999999999999999998876

>PTZ00421 coronin; Provisional

Probab=99.68  E-value=1.1e-15  Score=106.85  Aligned_cols=101  Identities=19%  Similarity=0.279  Sum_probs=78.9

Q ss_pred             ccccCceEEEEeCCCCCC--CCCCceeeecCccCcEEEEEeCCCC-CeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           6 QVASLVTCFVWDRRTLNE--TTAKPVGVLAGHRDGITFIDPKGDS-RHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      +++.|++|++||+.....  ....++..+.+|...|.+++|+|++ +.|++++.|++|++||+.+...            
T Consensus        93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~  172 (493)
T PTZ00421         93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT  172 (493)
T ss_pred             EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence            688899999999975311  1124677889999999999999975 6899999999999999986432            


Q ss_pred             -----------cceecCCcEEEEeCCCCcceeeecccCcc-eeeEeee
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNKTAQRNTFRA-VCEQNWE  106 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~  106 (118)
                                 ++++.|++|++||++++.....+..|... ...+.|.
T Consensus       173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~  220 (493)
T PTZ00421        173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA  220 (493)
T ss_pred             EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence                       78889999999999998877766666542 2334444

>KOG0286|consensus

Probab=99.67  E-value=6e-16  Score=99.51  Aligned_cols=98  Identities=20%  Similarity=0.205  Sum_probs=87.6

Q ss_pred             CcccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           4 KPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         4 ~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      ..+.+.|+..++||++.     +...++|.+|.+.|+.++|.|+|.-+++|+.|+++++||+|....             
T Consensus       202 FvSg~cD~~aklWD~R~-----~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi  276 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDVRS-----GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI  276 (343)
T ss_pred             EEecccccceeeeeccC-----cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence            34788999999999998     788899999999999999999999999999999999999997433             


Q ss_pred             ------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                                  .+|..|.++.+||.-.++..-.+.+|.+.|+++.-+
T Consensus       277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s  324 (343)
T KOG0286|consen  277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS  324 (343)
T ss_pred             eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC
Confidence                        556789999999999999998999999999986554

>KOG0292|consensus

Probab=99.67  E-value=1.9e-16  Score=113.77  Aligned_cols=104  Identities=17%  Similarity=0.263  Sum_probs=92.8

Q ss_pred             CCCCc------ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc----
Q psy1285           1 MVTKP------QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----   70 (118)
Q Consensus         1 ~~~~~------~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----   70 (118)
                      ++|+|      +.=.+|.|++||.+.     ...+..+.+|.++|..++|+|+...++||+.|-+|++|+..+.++    
T Consensus        15 lsFHP~rPwILtslHsG~IQlWDYRM-----~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL   89 (1202)
T KOG0292|consen   15 LSFHPKRPWILTSLHSGVIQLWDYRM-----GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL   89 (1202)
T ss_pred             eecCCCCCEEEEeecCceeeeehhhh-----hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence            35666      555689999999997     788899999999999999999999999999999999999987665    


Q ss_pred             -------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeec
Q psy1285          71 -------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 -------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  109 (118)
                                         +++|+|.+|+||+..+.+++..+.+|.-.|.+..|++.-
T Consensus        90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE  147 (1202)
T KOG0292|consen   90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE  147 (1202)
T ss_pred             ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence                               889999999999999999999999999889888887643

>KOG0319|consensus

Probab=99.66  E-value=3.9e-16  Score=109.87  Aligned_cols=105  Identities=24%  Similarity=0.327  Sum_probs=86.6

Q ss_pred             CCcccccCceEEEEeCCCCCCCCCCcee----eecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------
Q psy1285           3 TKPQVASLVTCFVWDRRTLNETTAKPVG----VLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------   70 (118)
Q Consensus         3 ~~~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------   70 (118)
                      |..++|.|+++++|++............    +-..|...|+|++++|+..++|+||.|++.++|++.+...        
T Consensus       426 ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~  505 (775)
T KOG0319|consen  426 FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT  505 (775)
T ss_pred             EEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCc
Confidence            3448999999999999862211122222    2357999999999999999999999999999999996443        


Q ss_pred             ---------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 ---------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ---------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                                     +++|.|++|+||.+.++++.+.+++|...|..+.|-.
T Consensus       506 RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~  557 (775)
T KOG0319|consen  506 RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR  557 (775)
T ss_pred             cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee
Confidence                           8889999999999999999999999999998888743

>KOG0315|consensus

Probab=99.65  E-value=2.5e-15  Score=95.04  Aligned_cols=82  Identities=24%  Similarity=0.489  Sum_probs=71.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      -++..-.||+||+++.   ...|+.++.+|...|..+.|..+|+.+.+|+.||+++|||+|.+.+               
T Consensus        56 Aaa~~qhvRlyD~~S~---np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvl  132 (311)
T KOG0315|consen   56 AAAGNQHVRLYDLNSN---NPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVL  132 (311)
T ss_pred             hhccCCeeEEEEccCC---CCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEe
Confidence            3566789999999984   3458999999999999999999999999999999999999998544               


Q ss_pred             -------cceecCCcEEEEeCCCCcce
Q psy1285          71 -------AANSKDQTIKLWDVRKFSNK   90 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~~~   90 (118)
                             ++|..+|.|++||++.....
T Consensus       133 hpnQteLis~dqsg~irvWDl~~~~c~  159 (311)
T KOG0315|consen  133 HPNQTELISGDQSGNIRVWDLGENSCT  159 (311)
T ss_pred             cCCcceEEeecCCCcEEEEEccCCccc
Confidence                   78889999999999987543

>KOG0273|consensus

Probab=99.65  E-value=3e-15  Score=101.24  Aligned_cols=98  Identities=23%  Similarity=0.295  Sum_probs=87.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +.+.|+.++++.+..     ..|..++.+|.+.|.++.|+|.+.+|++++.|++++||.......               
T Consensus       334 ts~td~~i~V~kv~~-----~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~  408 (524)
T KOG0273|consen  334 TSSTDGCIHVCKVGE-----DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIK  408 (524)
T ss_pred             ecCCCceEEEEEecC-----CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEe
Confidence            667799999999987     788999999999999999999999999999999999999654222               


Q ss_pred             -----------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -----------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -----------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                       ++++.|++|++||+..+.++..+..|..+|..+.|++.
T Consensus       409 wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~  463 (524)
T KOG0273|consen  409 WSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN  463 (524)
T ss_pred             ecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence                             78899999999999999999999999999999988743

>KOG0269|consensus

Probab=99.64  E-value=6.6e-16  Score=109.29  Aligned_cols=98  Identities=18%  Similarity=0.339  Sum_probs=81.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ++...|.+++||++.+    ..+...+.+|.++|.|+.|+|+..+||+||.|+.|+|||......               
T Consensus       194 s~~dsG~lqlWDlRqp----~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rV  269 (839)
T KOG0269|consen  194 SIHDSGYLQLWDLRQP----DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRV  269 (839)
T ss_pred             EecCCceEEEeeccCc----hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeee
Confidence            5566799999999974    456667889999999999999999999999999999999986443               


Q ss_pred             ----------cce--ecCCcEEEEeCCCCccee-eecccCcceeeEeeee
Q psy1285          71 ----------AAN--SKDQTIKLWDVRKFSNKT-AQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ----------~s~--~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~  107 (118)
                                +++  ..|..|+|||+|.+-.+. .+..|...++.+.|.-
T Consensus       270 kWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  270 KWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             eeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence                      333  358899999999887765 5568999999999964

>KOG0266|consensus

Probab=99.64  E-value=2.3e-15  Score=104.69  Aligned_cols=103  Identities=20%  Similarity=0.368  Sum_probs=86.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC-Cc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF-NG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~--------------   70 (118)
                      .++.|+.+++|+......   .....+.+|...|.+++|+|++.++++++.|+++++||+... ..              
T Consensus       176 ~~~~~~~i~~~~~~~~~~---~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~  252 (456)
T KOG0266|consen  176 AASSDGLIRIWKLEGIKS---NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSV  252 (456)
T ss_pred             EccCCCcEEEeecccccc---hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEE
Confidence            567899999999965211   256667889999999999999999999999999999999433 22              


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeeccc
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  111 (118)
                               ++|+.|++|++||+++++....+..|.+.|+.+.++..-..
T Consensus       253 ~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~  302 (456)
T KOG0266|consen  253 AFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL  302 (456)
T ss_pred             EecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCE
Confidence                     88999999999999999999999999999998888765443

>KOG0315|consensus

Probab=99.63  E-value=3.4e-15  Score=94.46  Aligned_cols=58  Identities=19%  Similarity=0.300  Sum_probs=49.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      |.|.||++||||++.     ....+.+ .|..+|+++..+|+...|++|..+|.|++||+....
T Consensus       100 TgseDgt~kIWdlR~-----~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~  157 (311)
T KOG0315|consen  100 TGSEDGTVKIWDLRS-----LSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS  157 (311)
T ss_pred             ecCCCceEEEEeccC-----cccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc
Confidence            778999999999996     3444444 488999999999999999999999999999998753

>KOG0281|consensus

Probab=99.63  E-value=4.7e-16  Score=102.40  Aligned_cols=57  Identities=26%  Similarity=0.451  Sum_probs=38.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      +.|+|.+|++||.++     ++++.++-+|...|..+.|+  ..++++++.|.++.+||+..+.
T Consensus       252 sGSSDsTvrvWDv~t-----ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps  308 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNT-----GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT  308 (499)
T ss_pred             ecCCCceEEEEeccC-----CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCch
Confidence            556677777777766     66666666677777777776  3466677777777777765543

>PTZ00420 coronin; Provisional

Probab=99.63  E-value=1.2e-14  Score=102.78  Aligned_cols=95  Identities=19%  Similarity=0.268  Sum_probs=75.2

Q ss_pred             ccccCceEEEEeCCCCCCC---CCCceeeecCccCcEEEEEeCCCCCe-EEEeeCCCcEEEEecCCCCc-----------
Q psy1285           6 QVASLVTCFVWDRRTLNET---TAKPVGVLAGHRDGITFIDPKGDSRH-LISNSKDQTIKLWDVRKFNG-----------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~-----------   70 (118)
                      +++.|++|+|||+......   ...++..+.+|.+.|.+++|+|++.. +++++.|++|++||+++...           
T Consensus        92 SgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~  171 (568)
T PTZ00420         92 SGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS  171 (568)
T ss_pred             EEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEE
Confidence            7888999999999752110   11345567889999999999998875 57899999999999986532           


Q ss_pred             -----------cceecCCcEEEEeCCCCcceeeecccCcce
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAV  100 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  100 (118)
                                 ++++.|+.|++||++++.....+..|.+.+
T Consensus       172 SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~  212 (568)
T PTZ00420        172 SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGK  212 (568)
T ss_pred             EEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCc
Confidence                       567789999999999998887777776544

>KOG0291|consensus

Probab=99.62  E-value=3.1e-15  Score=105.91  Aligned_cols=98  Identities=19%  Similarity=0.299  Sum_probs=87.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      |.+.||+|||||...     +.+..++..|.+.|..+.|+..++.+++.+.||+|+.||+.+.++               
T Consensus       367 TG~eDgKVKvWn~~S-----gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv  441 (893)
T KOG0291|consen  367 TGAEDGKVKVWNTQS-----GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV  441 (893)
T ss_pred             eccCCCcEEEEeccC-----ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence            788999999999998     889999999999999999999999999999999999999976544               


Q ss_pred             ---------cceecC-CcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ---------AANSKD-QTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ---------~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                               +.|+.| ..|.||++.+++.+..+.+|.++|.++.|++.
T Consensus       442 avD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~  489 (893)
T KOG0291|consen  442 AVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD  489 (893)
T ss_pred             EEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence                     445555 46999999999999999999999998777653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.62  E-value=1e-14  Score=107.12  Aligned_cols=96  Identities=22%  Similarity=0.254  Sum_probs=80.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.||+|++||+..     ...+..+.+|.+.|.+++|+| ++.+|++|+.|++|++||+++...              
T Consensus       550 s~~~Dg~v~lWd~~~-----~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~  624 (793)
T PLN00181        550 SSNFEGVVQVWDVAR-----SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQ  624 (793)
T ss_pred             EEeCCCeEEEEECCC-----CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEE
Confidence            577899999999986     677788889999999999997 788999999999999999975321              


Q ss_pred             ---------cceecCCcEEEEeCCCCcc-eeeecccCcceeeEeee
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSN-KTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~  106 (118)
                               ++|+.|+.|++||++.... ...+.+|...|..+.|.
T Consensus       625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~  670 (793)
T PLN00181        625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV  670 (793)
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe
Confidence                     7788999999999998763 44556788888877774

>KOG0270|consensus

Probab=99.61  E-value=1e-14  Score=97.94  Aligned_cols=105  Identities=18%  Similarity=0.216  Sum_probs=91.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      .+|.|.+|++||+.+     +++..++..|.+.|.++.|+| ....|++|+.|++|.+.|.|....              
T Consensus       261 SgsaD~TV~lWD~~~-----g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv  335 (463)
T KOG0270|consen  261 SGSADKTVKLWDVDT-----GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV  335 (463)
T ss_pred             ecCCCceEEEEEcCC-----CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence            678899999999998     788888888999999999998 567899999999999999995433              


Q ss_pred             ----------cceecCCcEEEEeCCCC-cceeeecccCcceeeEeeeeecccCccc
Q psy1285          71 ----------AANSKDQTIKLWDVRKF-SNKTAQRNTFRAVCEQNWEYRRENVPRQ  115 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~  115 (118)
                                .++..||+|+-+|+|+. ++...+..|.++|+++.++...+.+...
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t  391 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST  391 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee
Confidence                      67788999999999998 6677888999999999988777776544

>PTZ00421 coronin; Provisional

Probab=99.61  E-value=1.4e-14  Score=101.46  Aligned_cols=81  Identities=30%  Similarity=0.420  Sum_probs=68.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|++|+|||+..     ......+.+|.+.|.+++|+|++.+|++++.|++|++||+++...               
T Consensus       143 Sgs~DgtVrIWDl~t-----g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~  217 (493)
T PTZ00421        143 SAGADMVVNVWDVER-----GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRC  217 (493)
T ss_pred             EEeCCCEEEEEECCC-----CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence            568899999999987     667778889999999999999999999999999999999986432               


Q ss_pred             ---------cc----eecCCcEEEEeCCCCccee
Q psy1285          71 ---------AA----NSKDQTIKLWDVRKFSNKT   91 (118)
Q Consensus        71 ---------~s----~~~d~~i~iwd~~~~~~~~   91 (118)
                               ++    .+.|+.|++||+++.....
T Consensus       218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~  251 (493)
T PTZ00421        218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY  251 (493)
T ss_pred             EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence                     22    2357899999999876443

>KOG0265|consensus

Probab=99.61  E-value=7.6e-15  Score=94.69  Aligned_cols=84  Identities=26%  Similarity=0.423  Sum_probs=71.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +.+.|..|.+|++-.    ..+-...+++|.+.|..+.|.++++++++++.|+++..||.++...               
T Consensus        64 SgG~Dr~I~LWnv~g----dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~  139 (338)
T KOG0265|consen   64 SGGSDRAIVLWNVYG----DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD  139 (338)
T ss_pred             ecCCcceEEEEeccc----cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC
Confidence            788999999999764    1344456779999999999999999999999999999999998655               


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeee
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQ   93 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~   93 (118)
                               .+++.|+++++||+|+...++.+
T Consensus       140 p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~  171 (338)
T KOG0265|consen  140 PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF  171 (338)
T ss_pred             ccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence                     78899999999999966665544

>KOG0313|consensus

Probab=99.61  E-value=6.8e-15  Score=97.34  Aligned_cols=97  Identities=31%  Similarity=0.401  Sum_probs=83.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ++|-|.+|+.||+..     +....++.+ ...++|+.++|..++|++|+.|..+++||.++...               
T Consensus       276 S~SwDHTIk~WDlet-----g~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVs  349 (423)
T KOG0313|consen  276 SVSWDHTIKVWDLET-----GGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVS  349 (423)
T ss_pred             eecccceEEEEEeec-----ccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhh
Confidence            788899999999987     555555553 55689999999999999999999999999998654               


Q ss_pred             ------------cceecCCcEEEEeCCCCc-ceeeecccCcceeeEeeeee
Q psy1285          71 ------------AANSKDQTIKLWDVRKFS-NKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~  108 (118)
                                  ++|+.|+++++||+|... ++..+..|.+.|..+.|+-.
T Consensus       350 svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~  400 (423)
T KOG0313|consen  350 SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG  400 (423)
T ss_pred             heecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC
Confidence                        899999999999999998 66778899999999999743

>KOG0282|consensus

Probab=99.60  E-value=5.7e-16  Score=104.77  Aligned_cols=96  Identities=18%  Similarity=0.267  Sum_probs=84.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++.|+.|+||++..    ....++++.+|..+|..++|+++|..+++++.|+.+++||++++.+               
T Consensus       232 S~gmD~~vklW~vy~----~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf  307 (503)
T KOG0282|consen  232 SGGMDGLVKLWNVYD----DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKF  307 (503)
T ss_pred             ecCCCceEEEEEEec----CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeec
Confidence            788999999999975    3788899999999999999999999999999999999999998765               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNW  105 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  105 (118)
                              ++|..|+.|+.||+|+++.......|.+.+..+.|
T Consensus       308 ~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F  350 (503)
T KOG0282|consen  308 HPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF  350 (503)
T ss_pred             CCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence                    78899999999999999987776667666665554

>KOG0269|consensus

Probab=99.60  E-value=2.5e-15  Score=106.42  Aligned_cols=105  Identities=26%  Similarity=0.363  Sum_probs=87.3

Q ss_pred             CcccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           4 KPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         4 ~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      .-|++..|.|-+||+...  ...+.+..+..|...+.+++|++ ...+|++|+.||+|++||++....            
T Consensus       103 IAT~s~nG~i~vWdlnk~--~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR  180 (839)
T KOG0269|consen  103 IATCSTNGVISVWDLNKS--IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR  180 (839)
T ss_pred             heeecCCCcEEEEecCcc--ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence            348999999999999863  12455567889999999999998 567889999999999999986433            


Q ss_pred             ------------cceecCCcEEEEeCCCCcce-eeecccCcceeeEeeeeecc
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSNK-TAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~  110 (118)
                                  +++...|.+++||+|.+... .++..|.++|.++.|++.+.
T Consensus       181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~  233 (839)
T KOG0269|consen  181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE  233 (839)
T ss_pred             ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc
Confidence                        67777899999999998764 56779999999999999543

>KOG0295|consensus

Probab=99.60  E-value=1.1e-14  Score=96.03  Aligned_cols=96  Identities=24%  Similarity=0.307  Sum_probs=88.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++.|.+|++|+..+     +..+.++.+|...|..++.+.||..+++++.|.++++|-+.+..+               
T Consensus       210 S~srD~tik~We~~t-----g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~  284 (406)
T KOG0295|consen  210 SCSRDNTIKAWECDT-----GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIA  284 (406)
T ss_pred             ecccccceeEEeccc-----ceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEE
Confidence            789999999999988     899999999999999999999999999999999999999887633               


Q ss_pred             -----------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 -----------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 -----------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                                             .+++.|++|++||+.++.++..+.+|.+-|..+.|+
T Consensus       285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~  343 (406)
T KOG0295|consen  285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS  343 (406)
T ss_pred             ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEc
Confidence                                   567899999999999999999999999888877776

>KOG0316|consensus

Probab=99.60  E-value=2e-14  Score=90.49  Aligned_cols=80  Identities=28%  Similarity=0.369  Sum_probs=67.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++.|..+.+||+.+     ++..+.+.+|.++|+.++|+.+...+++|+-|.++++||.++...               
T Consensus        76 s~GgDk~v~vwDV~T-----Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S  150 (307)
T KOG0316|consen   76 SCGGDKAVQVWDVNT-----GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS  150 (307)
T ss_pred             cCCCCceEEEEEccc-----CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeE
Confidence            577899999999998     899999999999999999999999999999999999999987543               


Q ss_pred             --------cceecCCcEEEEeCCCCcce
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNK   90 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~   90 (118)
                              ++|+-||++|.||+|.++..
T Consensus       151 i~v~~heIvaGS~DGtvRtydiR~G~l~  178 (307)
T KOG0316|consen  151 IDVAEHEIVAGSVDGTVRTYDIRKGTLS  178 (307)
T ss_pred             EEecccEEEeeccCCcEEEEEeecceee
Confidence                    45556666666666665544

>KOG0276|consensus

Probab=99.59  E-value=1.5e-14  Score=100.92  Aligned_cols=96  Identities=23%  Similarity=0.270  Sum_probs=88.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +.|.|..||+|+.++     .+.+..+.+|.+.|.|++.+|...++++++.|.+|++||....-.               
T Consensus        72 ~GsDD~~IrVfnynt-----~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv  146 (794)
T KOG0276|consen   72 TGSDDMQIRVFNYNT-----GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV  146 (794)
T ss_pred             EecCCceEEEEeccc-----ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence            678899999999998     899999999999999999999999999999999999999976321               


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                                +++|-|++|++|.+..+.+...+.+|...|+++.|-
T Consensus       147 ~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy  192 (794)
T KOG0276|consen  147 AFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYY  192 (794)
T ss_pred             EecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEec
Confidence                      899999999999999999999999999999988873

>KOG1332|consensus

Probab=99.58  E-value=3.1e-14  Score=89.90  Aligned_cols=104  Identities=16%  Similarity=0.114  Sum_probs=85.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEe-CC-CCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDP-KG-DSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~-~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      |+++|++|||+.++...  ...++.++.+|.++|..+.| +| .|..||++++||.|.||...+++=             
T Consensus        28 TcsSD~tVkIf~v~~n~--~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SV  105 (299)
T KOG1332|consen   28 TCSSDGTVKIFEVRNNG--QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASV  105 (299)
T ss_pred             eecCCccEEEEEEcCCC--CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccc
Confidence            89999999999998632  13778899999999999999 45 799999999999999999887531             


Q ss_pred             --------------cceecCCcEEEEeCCCCc---ceeeecccCcceeeEeeeeeccc
Q psy1285          71 --------------AANSKDQTIKLWDVRKFS---NKTAQRNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~  111 (118)
                                    ++++.||+|.|.+++..-   ..+....|...|+.+.|.+.-.+
T Consensus       106 NsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen  106 NSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             eeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence                          889999999999988762   22233478889999999887544

>KOG0647|consensus

Probab=99.58  E-value=1e-14  Score=94.27  Aligned_cols=82  Identities=22%  Similarity=0.312  Sum_probs=68.0

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      =|++||+|++.....  ..+ .....|.++|.+++|+-||..+.+|+.|+.+++||+.+...                  
T Consensus        48 WD~tVR~wevq~~g~--~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~  124 (347)
T KOG0647|consen   48 WDGTVRIWEVQNSGQ--LVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPG  124 (347)
T ss_pred             cCCceEEEEEecCCc--ccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecC
Confidence            399999999986211  122 33457999999999999999999999999999999998654                  


Q ss_pred             ------cceecCCcEEEEeCCCCcceeee
Q psy1285          71 ------AANSKDQTIKLWDVRKFSNKTAQ   93 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~~~~~   93 (118)
                            ++||+|.+|++||.|...+...+
T Consensus       125 ~~~~cl~TGSWDKTlKfWD~R~~~pv~t~  153 (347)
T KOG0647|consen  125 MNYQCLVTGSWDKTLKFWDTRSSNPVATL  153 (347)
T ss_pred             CCcceeEecccccceeecccCCCCeeeee
Confidence                  89999999999999988876543

>KOG0302|consensus

Probab=99.57  E-value=6.9e-15  Score=97.38  Aligned_cols=99  Identities=19%  Similarity=0.380  Sum_probs=78.2

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc-------------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG-------------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~-------------------   70 (118)
                      +.|++|....+.=.  .-...+.+|...|-.|+||| ....+++|+.|++|+|||+|....                   
T Consensus       234 ~~I~lw~~~~g~W~--vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWn  311 (440)
T KOG0302|consen  234 KGIHLWEPSTGSWK--VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWN  311 (440)
T ss_pred             cceEeeeeccCcee--ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEcc
Confidence            57888888763210  11233567999999999999 467899999999999999998632                   


Q ss_pred             ------cceecCCcEEEEeCCCCcc---eeeecccCcceeeEeeeeeccc
Q psy1285          71 ------AANSKDQTIKLWDVRKFSN---KTAQRNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~  111 (118)
                            ++|+.||+++|||+|+.+.   +..+..|..+|+++.|++.-..
T Consensus       312 r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s  361 (440)
T KOG0302|consen  312 RREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS  361 (440)
T ss_pred             CCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence                  8899999999999998764   3477799999999999865443

>KOG0302|consensus

Probab=99.57  E-value=1.8e-14  Score=95.41  Aligned_cols=81  Identities=25%  Similarity=0.446  Sum_probs=67.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ++|.||+|||||++.+.   ..+....++|.+.|+.+.|+....+|++|+.||+++|||+|++..               
T Consensus       275 ScS~DgsIrIWDiRs~~---~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt  351 (440)
T KOG0302|consen  275 SCSCDGSIRIWDIRSGP---KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT  351 (440)
T ss_pred             eeecCceEEEEEecCCC---ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence            78999999999999731   233444488999999999998877999999999999999998654               


Q ss_pred             ------------cceecCCcEEEEeCCCCcc
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSN   89 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~   89 (118)
                                  ++++.|.+|.+||+....-
T Consensus       352 sieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  352 SIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             EEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence                        5677899999999865443

>KOG0310|consensus

Probab=99.56  E-value=2.8e-14  Score=96.67  Aligned_cols=97  Identities=23%  Similarity=0.316  Sum_probs=77.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC-CCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD-SRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.|+.+++||+.+     ...+.++.+|++.|.|.+++|. +..+++|++||+|++||.+....              
T Consensus       128 s~sDd~v~k~~d~s~-----a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~v  202 (487)
T KOG0310|consen  128 SGSDDKVVKYWDLST-----AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESV  202 (487)
T ss_pred             ecCCCceEEEEEcCC-----cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeE
Confidence            788899999999987     4556688999999999999984 55788999999999999997622              


Q ss_pred             --------cceecCCcEEEEeCCCCcce-eeecccCcceeeEeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNK-TAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~  107 (118)
                              +..+....|++||+-++... ..+.+|...|+++.+.-
T Consensus       203 l~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s  248 (487)
T KOG0310|consen  203 LALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS  248 (487)
T ss_pred             EEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence                    22334568999999966554 44556888999987754

>PTZ00420 coronin; Provisional

Probab=99.56  E-value=1.1e-13  Score=98.06  Aligned_cols=96  Identities=20%  Similarity=0.330  Sum_probs=76.3

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC-CCeEEEeeCCCcEEEEecCCCC--------------c-
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD-SRHLISNSKDQTIKLWDVRKFN--------------G-   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~--------------~-   70 (118)
                      .+.++.+++|+...     ..++..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||++...              . 
T Consensus        50 GG~~gvI~L~~~~r-----~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH  124 (568)
T PTZ00420         50 GGLIGAIRLENQMR-----KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH  124 (568)
T ss_pred             CCceeEEEeeecCC-----CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence            44577888888765     4567788999999999999996 7899999999999999986420              0 


Q ss_pred             -----------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -----------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -----------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                       ++++.|++|++||++++.....+. +...+..+.|++.
T Consensus       125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd  178 (568)
T PTZ00420        125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK  178 (568)
T ss_pred             CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC
Confidence                             467889999999999988665554 4456777777653

>KOG0295|consensus

Probab=99.55  E-value=3.3e-14  Score=93.71  Aligned_cols=74  Identities=24%  Similarity=0.456  Sum_probs=65.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ..+.|+++|+||+.+     +..+.++.+|.+.|..++|+|-|++|+++..|+++++||+++.++               
T Consensus       309 s~SrDktIk~wdv~t-----g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD  383 (406)
T KOG0295|consen  309 SGSRDKTIKIWDVST-----GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD  383 (406)
T ss_pred             eecccceEEEEeccC-----CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence            568899999999998     788999999999999999999999999999999999999998765               


Q ss_pred             --------cceecCCcEEEEeC
Q psy1285          71 --------AANSKDQTIKLWDV   84 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~   84 (118)
                              ++|+-|.++++|.-
T Consensus       384 fh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  384 FHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cCCCCceEEeccccceeeeeec
Confidence                    66777777777753

>KOG1446|consensus

Probab=99.55  E-value=5.8e-14  Score=90.88  Aligned_cols=60  Identities=20%  Similarity=0.290  Sum_probs=53.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      +...|.+||.-++..     .+.++.+.||...|.+++.+|-+..+++++.|++|++||++...+
T Consensus        75 Stk~d~tIryLsl~d-----NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c  134 (311)
T KOG1446|consen   75 STKEDDTIRYLSLHD-----NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC  134 (311)
T ss_pred             cCCCCCceEEEEeec-----CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC
Confidence            345588999999977     788999999999999999999889999999999999999996544

>KOG0316|consensus

Probab=99.55  E-value=3.1e-14  Score=89.65  Aligned_cols=91  Identities=22%  Similarity=0.333  Sum_probs=77.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      |+++|.+||+|+...     +..++++.+|...|..++.+.|...+++|+.|+.|.+||+.+...               
T Consensus        34 tcGsdrtvrLWNp~r-----g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~  108 (307)
T KOG0316|consen   34 TCGSDRTVRLWNPLR-----GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVR  108 (307)
T ss_pred             EcCCCceEEeecccc-----cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEE
Confidence            899999999999987     899999999999999999999999999999999999999998654               


Q ss_pred             --------cceecCCcEEEEeCCCCc--ceeeecccCccee
Q psy1285          71 --------AANSKDQTIKLWDVRKFS--NKTAQRNTFRAVC  101 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~  101 (118)
                              ++|+.|.++++||-|..+  +++.+......|.
T Consensus       109 fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~  149 (307)
T KOG0316|consen  109 FNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS  149 (307)
T ss_pred             ecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCcee
Confidence                    789999999999987654  3333333333343

>KOG0273|consensus

Probab=99.54  E-value=5.3e-14  Score=95.29  Aligned_cols=99  Identities=17%  Similarity=0.213  Sum_probs=89.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||.+|||+..      +..+.++..|.++|.+++|+..|+++++++.|+++.+||..+...               
T Consensus       252 tG~~~G~~riw~~~------G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVd  325 (524)
T KOG0273|consen  252 TGSEDGEARIWNKD------GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVD  325 (524)
T ss_pred             EeecCcEEEEEecC------chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceE
Confidence            77889999999997      577788889999999999999999999999999999999976433               


Q ss_pred             -------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecc
Q psy1285          71 -------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                             ++.+.|+.|+++.+....+...+.+|.++|..+.|+++-.
T Consensus       326 W~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~  372 (524)
T KOG0273|consen  326 WQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS  372 (524)
T ss_pred             EecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc
Confidence                   6778899999999999999999999999999999997643

>KOG0293|consensus

Probab=99.54  E-value=5.3e-14  Score=94.31  Aligned_cols=62  Identities=24%  Similarity=0.340  Sum_probs=53.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      +++.|.+.-||++-.-  ...+..+++.+|..+|.-+.||||.++|++|+.|..+.+||+.++.
T Consensus       241 saSkD~Taiiw~v~~d--~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd  302 (519)
T KOG0293|consen  241 SASKDSTAIIWIVVYD--VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD  302 (519)
T ss_pred             eccCCceEEEEEEecC--cceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch
Confidence            7889999999998641  1145678899999999999999999999999999999999998654

>KOG0318|consensus

Probab=99.52  E-value=1.5e-13  Score=94.34  Aligned_cols=99  Identities=22%  Similarity=0.259  Sum_probs=88.1

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeec---CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLA---GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------   70 (118)
                      .++++||++.+||-.+     ++.+..+.   +|.+.|+.+.|+||+..+++++.|.++++||+.+...           
T Consensus       206 at~gsDgki~iyDGkt-----ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~  280 (603)
T KOG0318|consen  206 ATAGSDGKIYIYDGKT-----GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE  280 (603)
T ss_pred             EEecCCccEEEEcCCC-----ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence            3899999999999988     78888887   8999999999999999999999999999999987544           


Q ss_pred             -------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                   ++.+.+|+|.+++...+..+..+.+|...|+.+.-+..
T Consensus       281 dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d  331 (603)
T KOG0318|consen  281 DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD  331 (603)
T ss_pred             ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence                         77888999999999999988888899998887766553

>KOG0772|consensus

Probab=99.52  E-value=7.4e-14  Score=95.73  Aligned_cols=108  Identities=22%  Similarity=0.310  Sum_probs=87.0

Q ss_pred             cccCceEEEEeCCCCCCCCCCce-eeecCccC--cEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPV-GVLAGHRD--GITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~-~~~~~h~~--~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      +-.||.|++|+.....   ..+. ..-.+|..  .|.|+.||++|++|++-+.|+++++||++++..             
T Consensus       335 gc~DGSIQ~W~~~~~~---v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~  411 (641)
T KOG0772|consen  335 GCLDGSIQIWDKGSRT---VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP  411 (641)
T ss_pred             cccCCceeeeecCCcc---cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence            4458999999986421   2232 33357877  899999999999999999999999999998654             


Q ss_pred             -------------cc------eecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccCccccC
Q psy1285          71 -------------AA------NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQLG  117 (118)
Q Consensus        71 -------------~s------~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  117 (118)
                                   ++      ++..+++.+||..+......+......|..+.|+++++++.+..|
T Consensus       412 ~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg  477 (641)
T KOG0772|consen  412 GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG  477 (641)
T ss_pred             CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence                         22      344578999999999999988877888999999999999876554

>KOG0305|consensus

Probab=99.52  E-value=4.2e-14  Score=97.66  Aligned_cols=107  Identities=22%  Similarity=0.312  Sum_probs=88.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ..+.|+.|..+|++...    .....+.+|...|..++|+++++++|+|+.|+.+.|||......               
T Consensus       275 sGsr~~~I~~~dvR~~~----~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a  350 (484)
T KOG0305|consen  275 SGSRDGKILNHDVRISQ----HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA  350 (484)
T ss_pred             EecCCCcEEEEEEecch----hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEee
Confidence            56779999999999732    22224789999999999999999999999999999999965433               


Q ss_pred             ---------cc--eecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccCccccC
Q psy1285          71 ---------AA--NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQLG  117 (118)
Q Consensus        71 ---------~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  117 (118)
                               |+  |+.|+.|++||..++..+..+. ....|+.+.|+.....+..-.|
T Consensus       351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG  407 (484)
T KOG0305|consen  351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG  407 (484)
T ss_pred             eCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC
Confidence                     33  5579999999999999887776 5567999999999887766555

>KOG0283|consensus

Probab=99.52  E-value=1.1e-13  Score=98.37  Aligned_cols=99  Identities=15%  Similarity=0.184  Sum_probs=80.4

Q ss_pred             CcccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           4 KPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         4 ~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      -.++|.|.+||+|++..     .+++..|. |.+.|.|++|+| |.+++++|+-|++|+||++.....            
T Consensus       383 LLSSSMDKTVRLWh~~~-----~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITA  456 (712)
T KOG0283|consen  383 LLSSSMDKTVRLWHPGR-----KECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITA  456 (712)
T ss_pred             eEeccccccEEeecCCC-----cceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhee
Confidence            34889999999999986     67777776 999999999999 899999999999999999986443            


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeec--cc------CcceeeEeeeee
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQR--NT------FRAVCEQNWEYR  108 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~--~~------~~~v~~~~~~~~  108 (118)
                                +.|+.+|.+++|+.+..+......  .+      ...|+.+++.+-
T Consensus       457 vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~  512 (712)
T KOG0283|consen  457 VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG  512 (712)
T ss_pred             EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC
Confidence                      779999999999999877654322  11      125788777543

>KOG0645|consensus

Probab=99.52  E-value=2.9e-13  Score=86.54  Aligned_cols=103  Identities=17%  Similarity=0.298  Sum_probs=82.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .+|-|.++-||.-..   ...+.+..+++|...|.|++|+++|++||+|++|++|-+|.+.....               
T Consensus        78 ~aSFD~t~~Iw~k~~---~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK  154 (312)
T KOG0645|consen   78 SASFDATVVIWKKED---GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK  154 (312)
T ss_pred             EeeccceEEEeecCC---CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc
Confidence            678899999998765   23678899999999999999999999999999999999998874222               


Q ss_pred             -----------cceecCCcEEEEeCCCC---cceeeecccCcceeeEeeeeecccCccc
Q psy1285          71 -----------AANSKDQTIKLWDVRKF---SNKTAQRNTFRAVCEQNWEYRRENVPRQ  115 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~  115 (118)
                                 +++++|.+|++|+-..+   .+...+.+|.+    .+|++.|.+.+.+
T Consensus       155 ~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~----TVW~~~F~~~G~r  209 (312)
T KOG0645|consen  155 HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN----TVWSLAFDNIGSR  209 (312)
T ss_pred             EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc----eEEEEEecCCCce
Confidence                       88999999999987632   34455555654    5677777765543

>KOG0292|consensus

Probab=99.51  E-value=1.3e-13  Score=99.59  Aligned_cols=101  Identities=20%  Similarity=0.394  Sum_probs=87.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +||.|.+||||+-..     ...+..+.||...|+|..|+|....++|+|-|-+|++||+...+.               
T Consensus       110 SASDDQTIrIWNwqs-----r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~  184 (1202)
T KOG0292|consen  110 SASDDQTIRIWNWQS-----RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ  184 (1202)
T ss_pred             EccCCCeEEEEeccC-----CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence            899999999999987     789999999999999999999989999999999999999975332               


Q ss_pred             -------------------------------------cceecCCcEEEEeCCCCccee--eecccCcceeeEeeeeeccc
Q psy1285          71 -------------------------------------AANSKDQTIKLWDVRKFSNKT--AQRNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        71 -------------------------------------~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~  111 (118)
                                                           ++|++|..|++|.....+.-.  ...+|.+.|+++.|+++-+-
T Consensus       185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l  264 (1202)
T KOG0292|consen  185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL  264 (1202)
T ss_pred             ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence                                                 789999999999987665433  34499999999999886543

>KOG0274|consensus

Probab=99.51  E-value=1.9e-13  Score=96.37  Aligned_cols=95  Identities=26%  Similarity=0.322  Sum_probs=84.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|.++|+||..+     ++..+.+.+|.+-+.++...  ...+.+|+.|.+|++|++.++..               
T Consensus       266 sgS~D~t~rvWd~~s-----g~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~  338 (537)
T KOG0274|consen  266 SGSTDKTERVWDCST-----GECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ  338 (537)
T ss_pred             EEecCCcEEeEecCC-----CcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence            788899999999887     89999999999999999776  44778899999999999997654               


Q ss_pred             ------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 ------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                            ++|+.|++|++||+++++.+..+.+|...|..+.++.
T Consensus       339 ~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~  381 (537)
T KOG0274|consen  339 LDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS  381 (537)
T ss_pred             ecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC
Confidence                  7899999999999999999999999999888876655

>KOG0265|consensus

Probab=99.50  E-value=2.2e-13  Score=88.08  Aligned_cols=101  Identities=28%  Similarity=0.374  Sum_probs=90.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++-|+.|++||++.     ......+.+|.+.|..+..+++|..+.+-+.|.++++||++-+..               
T Consensus       191 sggIdn~ikvWd~r~-----~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf  265 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRK-----NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF  265 (338)
T ss_pred             eccccCceeeecccc-----CcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence            566789999999997     788889999999999999999999999999999999999986533               


Q ss_pred             ----------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeeccc
Q psy1285          71 ----------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        71 ----------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  111 (118)
                                      ..|+.|..+.+||......+..+++|...|..++|++..+-
T Consensus       266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~i  322 (338)
T KOG0265|consen  266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPI  322 (338)
T ss_pred             hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcE
Confidence                            56788999999999999999999999999999999887654

>KOG0275|consensus

Probab=99.48  E-value=6.3e-14  Score=91.93  Aligned_cols=99  Identities=19%  Similarity=0.229  Sum_probs=83.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeec-CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLA-GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +.+.||+|++|.+.+     +.+++.+. +|...|.|+.|+.|+..+++++.|.++++.-+.++.+              
T Consensus       280 sGsqDGkIKvWri~t-----G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a  354 (508)
T KOG0275|consen  280 SGSQDGKIKVWRIET-----GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA  354 (508)
T ss_pred             ccCcCCcEEEEEEec-----chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccce
Confidence            678899999999998     77777776 8999999999999999999999999999999987654              


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeec--ccCcceeeEeeeeec
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQR--NTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~  109 (118)
                               ++++.||+|++|+.++..+...+.  +..-+|..+..=++.
T Consensus       355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKn  404 (508)
T KOG0275|consen  355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKN  404 (508)
T ss_pred             EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCC
Confidence                     788999999999999999887765  444455555544444

>KOG0643|consensus

Probab=99.47  E-value=3.6e-13  Score=86.12  Aligned_cols=99  Identities=27%  Similarity=0.365  Sum_probs=82.9

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      .+++.|.+..+|-.-.     ++.+.++.+|.+.|+|++...+..++++|+.|.+++|||+.++..              
T Consensus        26 FscaKD~~~~vw~s~n-----GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~  100 (327)
T KOG0643|consen   26 FSCAKDSTPTVWYSLN-----GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVD  100 (327)
T ss_pred             EEecCCCCceEEEecC-----CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEe
Confidence            3789999999998754     799999999999999999999999999999999999999998665              


Q ss_pred             --------------------------------------------------------------cceecCCcEEEEeCCCCc
Q psy1285          71 --------------------------------------------------------------AANSKDQTIKLWDVRKFS   88 (118)
Q Consensus        71 --------------------------------------------------------------~s~~~d~~i~iwd~~~~~   88 (118)
                                                                                    ++|..||.|.+||.+++.
T Consensus       101 F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~  180 (327)
T KOG0643|consen  101 FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK  180 (327)
T ss_pred             eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc
Confidence                                                                          667778889999998876


Q ss_pred             ceeee-cccCcceeeEeeeee
Q psy1285          89 NKTAQ-RNTFRAVCEQNWEYR  108 (118)
Q Consensus        89 ~~~~~-~~~~~~v~~~~~~~~  108 (118)
                      ..... ..|...++.+.+++.
T Consensus       181 ~~v~s~~~h~~~Ind~q~s~d  201 (327)
T KOG0643|consen  181 ELVDSDEEHSSKINDLQFSRD  201 (327)
T ss_pred             eeeechhhhccccccccccCC
Confidence            65544 467777777766544

>KOG1407|consensus

Probab=99.47  E-value=3.2e-13  Score=86.03  Aligned_cols=100  Identities=21%  Similarity=0.262  Sum_probs=87.7

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc----------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----------------   70 (118)
                      ....|.|.|.....     -+++.++++|...+.|+.|+|+|+++|+|+.|-.+.+||+....+                
T Consensus       165 t~GlG~v~ILsyps-----Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSF  239 (313)
T KOG1407|consen  165 TNGLGCVEILSYPS-----LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSF  239 (313)
T ss_pred             ecCCceEEEEeccc-----cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEe
Confidence            34468899988876     789999999999999999999999999999999999999986543                


Q ss_pred             -------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccC
Q psy1285          71 -------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  112 (118)
                             ++||.|..|-|=++.++.....+. +.++-..++|+++++-+
T Consensus       240 S~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LL  287 (313)
T KOG1407|consen  240 SHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLL  287 (313)
T ss_pred             ccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCcee
Confidence                   889999999999999999988876 66778899999987643

>KOG0288|consensus

Probab=99.47  E-value=5.2e-14  Score=94.06  Aligned_cols=60  Identities=28%  Similarity=0.412  Sum_probs=52.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      -++.|+.+++|++..     .....++.+|++.|.++.|......+++|+.|.+|++||+....+
T Consensus       236 Aas~d~~~r~Wnvd~-----~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C  295 (459)
T KOG0288|consen  236 AASNDKNLRLWNVDS-----LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC  295 (459)
T ss_pred             eecCCCceeeeeccc-----hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe
Confidence            467899999999987     788889999999999999987665689999999999999986443

>KOG0300|consensus

Probab=99.46  E-value=1.7e-13  Score=89.65  Aligned_cols=97  Identities=27%  Similarity=0.442  Sum_probs=80.5

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      .|++=|.+..+||+.+     ++++..+.+|.......+-+|..+++++.+.|.+.++||++....              
T Consensus       288 vTaSWDRTAnlwDVEt-----ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS  362 (481)
T KOG0300|consen  288 VTASWDRTANLWDVET-----GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS  362 (481)
T ss_pred             eeeeccccceeeeecc-----CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence            3888899999999998     899999999999999999999999999999999999999985322              


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                               ++|++|.+|++||+|+++.+..-.....+++.+.-+
T Consensus       363 ~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs  407 (481)
T KOG0300|consen  363 VVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVS  407 (481)
T ss_pred             EEEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeEee
Confidence                     789999999999999998765443344444444443

>KOG0308|consensus

Probab=99.46  E-value=4.1e-13  Score=94.03  Aligned_cols=95  Identities=23%  Similarity=0.349  Sum_probs=78.2

Q ss_pred             ccccCceEEEEeCCCCCC-----CCCCceeeec-CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------
Q psy1285           6 QVASLVTCFVWDRRTLNE-----TTAKPVGVLA-GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------   70 (118)
                      ++|-|+.|++||++.+..     ........+. ++...|++++.++.|..+++|+..+.+++||.++...         
T Consensus       135 SgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd  214 (735)
T KOG0308|consen  135 SGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD  214 (735)
T ss_pred             ecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc
Confidence            778899999999996421     1122233344 7889999999999999999999999999999987543         


Q ss_pred             --------------cceecCCcEEEEeCCCCcceeeecccCcce
Q psy1285          71 --------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAV  100 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  100 (118)
                                    +++++|++|++||++..+++..+..|...|
T Consensus       215 NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V  258 (735)
T KOG0308|consen  215 NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV  258 (735)
T ss_pred             ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCce
Confidence                          789999999999999999998888787753

>KOG0306|consensus

Probab=99.46  E-value=8.6e-13  Score=93.79  Aligned_cols=95  Identities=20%  Similarity=0.271  Sum_probs=82.6

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------   70 (118)
                      -.||.|+||+...     .....++.+|...|.++.|...|..|++|+.|+.|.+||+-....                 
T Consensus        84 YaDGsVqif~~~s-----~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~  158 (888)
T KOG0306|consen   84 YADGSVQIFSLES-----EEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL  158 (888)
T ss_pred             ecCceEEeeccCC-----CceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence            4699999999986     577788999999999999999999999999999999999864332                 


Q ss_pred             ------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 ------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                            ++.+.|+.|++||+.+..+......|.+.+..++.+.
T Consensus       159 ~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~  201 (888)
T KOG0306|consen  159 NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE  201 (888)
T ss_pred             CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec
Confidence                  7789999999999999999988888887777666554

>KOG0310|consensus

Probab=99.46  E-value=2.4e-13  Score=92.27  Aligned_cols=91  Identities=22%  Similarity=0.301  Sum_probs=72.2

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      .|.|+|+|+++     ...+..+.+|+.++....|+| ++..+++|+.|+.+++||+.+...                  
T Consensus        89 sG~V~vfD~k~-----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~  163 (487)
T KOG0310|consen   89 SGHVKVFDMKS-----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISP  163 (487)
T ss_pred             cCcEEEecccc-----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecccc
Confidence            48999999765     456778899999999999998 566788999999999999986422                  


Q ss_pred             ------cceecCCcEEEEeCCCCcceeeecccCcceeeEee
Q psy1285          71 ------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNW  105 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  105 (118)
                            ++|++||+|++||+|.........+|..+|..+.+
T Consensus       164 ~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~  204 (487)
T KOG0310|consen  164 ANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLA  204 (487)
T ss_pred             CCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEE
Confidence                  78999999999999998643333356666665443

>KOG1009|consensus

Probab=99.44  E-value=8.8e-13  Score=88.07  Aligned_cols=107  Identities=15%  Similarity=0.225  Sum_probs=89.1

Q ss_pred             CcccccCceEEEEeCCCCCCCCC----CceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC--------C----
Q psy1285           4 KPQVASLVTCFVWDRRTLNETTA----KPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR--------K----   67 (118)
Q Consensus         4 ~~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~--------~----   67 (118)
                      .-|++.|..||||-+.......+    +....+..|...|+++.|+|+|..|++|+.+|.+.+|...        +    
T Consensus        29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~  108 (434)
T KOG1009|consen   29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADL  108 (434)
T ss_pred             eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhh
Confidence            34899999999999986444332    2345677899999999999999999999999999999876        2    


Q ss_pred             -CCc--------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecc
Q psy1285          68 -FNG--------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        68 -~~~--------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                       .+.                          ++++-|..+++||++.+.....+..|...+..++|++-..
T Consensus       109 ~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q  178 (434)
T KOG1009|consen  109 NKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ  178 (434)
T ss_pred             CccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh
Confidence             000                          7889999999999999999999999999999999986543

>KOG0282|consensus

Probab=99.44  E-value=2.8e-13  Score=91.98  Aligned_cols=102  Identities=20%  Similarity=0.291  Sum_probs=91.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      -.+.|+.|+-||++.     ++.++++..|.+.|..+.|-++++.+++.+.|+++++|+.+.+..               
T Consensus       317 ~G~sd~ki~~wDiRs-----~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~  391 (503)
T KOG0282|consen  317 VGGSDKKIRQWDIRS-----GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCL  391 (503)
T ss_pred             EecCCCcEEEEeccc-----hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcce
Confidence            356799999999998     788899999999999999999999999999999999999886432               


Q ss_pred             --------------------------------------------------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 --------------------------------------------------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 --------------------------------------------------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                                                                              ++|+.||.+.+||.++-+....+.
T Consensus       392 ~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk  471 (503)
T KOG0282|consen  392 TLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK  471 (503)
T ss_pred             ecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc
Confidence                                                                    788999999999999999999999


Q ss_pred             ccCcceeeEeeeeecccC
Q psy1285          95 NTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        95 ~~~~~v~~~~~~~~~~~~  112 (118)
                      .|.+.+..+.|++-...-
T Consensus       472 ah~~~ci~v~wHP~e~Sk  489 (503)
T KOG0282|consen  472 AHDQPCIGVDWHPVEPSK  489 (503)
T ss_pred             cCCcceEEEEecCCCcce
Confidence            999999999998765543

>KOG0267|consensus

Probab=99.43  E-value=7.4e-14  Score=98.65  Aligned_cols=98  Identities=29%  Similarity=0.378  Sum_probs=85.3

Q ss_pred             CcccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           4 KPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         4 ~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      ...++++|+|++||+..     ...++++.+|...+.++.|+|-+.+.++|+.|..+++||.+...+             
T Consensus        85 laagsasgtiK~wDlee-----Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~  159 (825)
T KOG0267|consen   85 LAAGSASGTIKVWDLEE-----AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV  159 (825)
T ss_pred             hcccccCCceeeeehhh-----hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEE
Confidence            34678899999999987     788889999999999999999999999999999999999984322             


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                                ++|+.|.+++|||...++....|..|...+..++++
T Consensus       160 l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h  205 (825)
T KOG0267|consen  160 LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH  205 (825)
T ss_pred             EeecCCCceeeccCCcceeeeecccccccccccccccccccccccC
Confidence                      677788999999999999998888888877777654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.43  E-value=4.5e-12  Score=93.43  Aligned_cols=97  Identities=16%  Similarity=0.220  Sum_probs=75.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeC-CCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPK-GDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.|++|++||++.     ......+.. ...+.++.|+ +++.++++|+.|+.|++||+++...              
T Consensus       593 Sgs~Dg~v~iWd~~~-----~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~  666 (793)
T PLN00181        593 SGSDDGSVKLWSINQ-----GVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSY  666 (793)
T ss_pred             EEcCCCEEEEEECCC-----CcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEE
Confidence            678899999999987     566666664 4678999995 5799999999999999999976431              


Q ss_pred             ---------cceecCCcEEEEeCCCC------cceeeecccCcceeeEeeeee
Q psy1285          71 ---------AANSKDQTIKLWDVRKF------SNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~  108 (118)
                               ++++.|++|++||++..      .....+.+|...+..+.|++.
T Consensus       667 v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~  719 (793)
T PLN00181        667 VRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS  719 (793)
T ss_pred             EEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC
Confidence                     78899999999999853      344556667666666666543

>KOG0291|consensus

Probab=99.42  E-value=1.8e-12  Score=92.23  Aligned_cols=79  Identities=24%  Similarity=0.442  Sum_probs=67.7

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------------   70 (118)
                      =|++.+|+-..     ...+...++|...+.+++++|||.++++|+.||+|++||.++.-+                   
T Consensus       329 lgQLlVweWqs-----EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~  403 (893)
T KOG0291|consen  329 LGQLLVWEWQS-----ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTAR  403 (893)
T ss_pred             cceEEEEEeec-----cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEec
Confidence            47999999986     556666789999999999999999999999999999999998544                   


Q ss_pred             ----cceecCCcEEEEeCCCCcceeee
Q psy1285          71 ----AANSKDQTIKLWDVRKFSNKTAQ   93 (118)
Q Consensus        71 ----~s~~~d~~i~iwd~~~~~~~~~~   93 (118)
                          .+.|-||+|+.||++..+..+.+
T Consensus       404 g~~llssSLDGtVRAwDlkRYrNfRTf  430 (893)
T KOG0291|consen  404 GNVLLSSSLDGTVRAWDLKRYRNFRTF  430 (893)
T ss_pred             CCEEEEeecCCeEEeeeecccceeeee
Confidence                67789999999999776665543

>KOG0267|consensus

Probab=99.41  E-value=7e-13  Score=93.84  Aligned_cols=98  Identities=20%  Similarity=0.350  Sum_probs=82.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ..+.|+.+++||++.     .-+.+.+.+|...+.+++|+|+|+++++++.|.++++||...+..               
T Consensus       129 ~gStdtd~~iwD~Rk-----~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle  203 (825)
T KOG0267|consen  129 SGSTDTDLKIWDIRK-----KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE  203 (825)
T ss_pred             cccccccceehhhhc-----cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc
Confidence            467899999999997     677788889999999999999999999999999999999954321               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                              ++|+.|+++++||+++...+.........|.+..|+..
T Consensus       204 ~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~  249 (825)
T KOG0267|consen  204 FHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPD  249 (825)
T ss_pred             cCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCC
Confidence                    88999999999999999888777655666777666543

>KOG1273|consensus

Probab=99.41  E-value=1.8e-12  Score=84.68  Aligned_cols=57  Identities=30%  Similarity=0.377  Sum_probs=51.7

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      .||.|-|||+.+     ..+...+.+|..+|.+++||++|+.|++.+.|..|++||+..+..
T Consensus        43 ~nG~vvI~D~~T-----~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~   99 (405)
T KOG1273|consen   43 ANGRVVIYDFDT-----FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP   99 (405)
T ss_pred             cCCcEEEEEccc-----cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc
Confidence            589999999987     566677889999999999999999999999999999999987654

>KOG0313|consensus

Probab=99.40  E-value=1.4e-12  Score=86.52  Aligned_cols=105  Identities=25%  Similarity=0.315  Sum_probs=84.1

Q ss_pred             ccccCceEEEEeCCC--------------------CCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEec
Q psy1285           6 QVASLVTCFVWDRRT--------------------LNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV   65 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~--------------------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~   65 (118)
                      ++|-|.+++||+...                    .......|+.++.+|.++|.++.|++ ...+.+++.|.+|+.||+
T Consensus       210 SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDl  288 (423)
T KOG0313|consen  210 SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDL  288 (423)
T ss_pred             eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEe
Confidence            678899999999321                    11124567788999999999999997 668899999999999999


Q ss_pred             CCCCc----------------------cceecCCcEEEEeCCCCcce---eeecccCcceeeEeeeeeccc
Q psy1285          66 RKFNG----------------------AANSKDQTIKLWDVRKFSNK---TAQRNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        66 ~~~~~----------------------~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~  111 (118)
                      .....                      ++|+.|..|++||.|++.--   ..+.+|.+=|..+.|++....
T Consensus       289 etg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~  359 (423)
T KOG0313|consen  289 ETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF  359 (423)
T ss_pred             ecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce
Confidence            87543                      88999999999999988532   355689988888888876544

>KOG0647|consensus

Probab=99.40  E-value=1.8e-12  Score=84.00  Aligned_cols=59  Identities=24%  Similarity=0.326  Sum_probs=49.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC--CCeEEEeeCCCcEEEEecCCCCc
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD--SRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      .++.|+.+++||+.+     . ....+..|.++|.++.|-+.  ..+|++|+.|++++.||.|+...
T Consensus        89 ~g~~Dk~~k~wDL~S-----~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p  149 (347)
T KOG0647|consen   89 SGGCDKQAKLWDLAS-----G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP  149 (347)
T ss_pred             eeccCCceEEEEccC-----C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence            567899999999987     4 44556779999999999754  45899999999999999997544

>KOG0274|consensus

Probab=99.39  E-value=6e-12  Score=88.91  Aligned_cols=96  Identities=24%  Similarity=0.329  Sum_probs=83.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceee-ecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGV-LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +.+.|.++++||...     ...+.. +.+|.+.|.++++..-+..|++|+.|.++++||..+..+              
T Consensus       223 ~~s~~~tl~~~~~~~-----~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~  297 (537)
T KOG0274|consen  223 SGSDDSTLHLWDLNN-----GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL  297 (537)
T ss_pred             ecCCCceeEEeeccc-----ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence            667889999999987     566655 999999999999987778999999999999999988766              


Q ss_pred             -------cceecCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 -------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                             ++|+.|.+|++|++.++..+..+.+|..+|.++..+
T Consensus       298 ~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~  340 (537)
T KOG0274|consen  298 TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD  340 (537)
T ss_pred             EccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec
Confidence                   667899999999999999888887788888876665

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.38  E-value=1.1e-11  Score=79.26  Aligned_cols=99  Identities=32%  Similarity=0.398  Sum_probs=81.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||.+++||+..     .+....+..|...+.++.|++++.++++++.|+.+.+||+++...               
T Consensus        68 ~~~~~~~i~i~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~  142 (289)
T cd00200          68 SGSSDKTIRLWDLET-----GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA  142 (289)
T ss_pred             EEcCCCeEEEEEcCc-----ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence            566799999999986     566677788998999999999988888888899999999974321               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeec
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  109 (118)
                              ++++.++.|++||++..+....+..+...+..+.|++.-
T Consensus       143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  189 (289)
T cd00200         143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG  189 (289)
T ss_pred             EcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc
Confidence                    444459999999999888877777777788888887653

>KOG0296|consensus

Probab=99.38  E-value=5.2e-12  Score=83.51  Aligned_cols=95  Identities=19%  Similarity=0.301  Sum_probs=81.6

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc----------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----------------   70 (118)
                      .+.||.+-+|.+..     ....+.+.+|..++.+-.|.|+|+.++++..||+|++||+.+...                
T Consensus       166 G~~DGsvWmw~ip~-----~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~  240 (399)
T KOG0296|consen  166 GSTDGSVWMWQIPS-----QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCIS  240 (399)
T ss_pred             ecCCCcEEEEECCC-----cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccc
Confidence            35689999999986     466778899999999999999999999999999999999987543                


Q ss_pred             -------------------------------------------------------------cceecCCcEEEEeCCCCcc
Q psy1285          71 -------------------------------------------------------------AANSKDQTIKLWDVRKFSN   89 (118)
Q Consensus        71 -------------------------------------------------------------~s~~~d~~i~iwd~~~~~~   89 (118)
                                                                                   ++|+-||+|.|||+...+.
T Consensus       241 ~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~  320 (399)
T KOG0296|consen  241 LNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL  320 (399)
T ss_pred             cccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh
Confidence                                                                         7889999999999998776


Q ss_pred             eeeecccCcceeeEeeee
Q psy1285          90 KTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        90 ~~~~~~~~~~v~~~~~~~  107 (118)
                      .... .|...|..+.|..
T Consensus       321 R~~c-~he~~V~~l~w~~  337 (399)
T KOG0296|consen  321 RHIC-EHEDGVTKLKWLN  337 (399)
T ss_pred             heec-cCCCceEEEEEcC
Confidence            5444 5788899988864

>KOG0275|consensus

Probab=99.38  E-value=5.4e-13  Score=87.60  Aligned_cols=79  Identities=19%  Similarity=0.279  Sum_probs=70.5

Q ss_pred             CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------------------------cceecCCcEEEE
Q psy1285          34 GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------------------------AANSKDQTIKLW   82 (118)
Q Consensus        34 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------------------------~s~~~d~~i~iw   82 (118)
                      +..+.+.|..|+|||++|++|+.||.|.+||..++..                               ++|+.||+|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            4566788999999999999999999999999987543                               899999999999


Q ss_pred             eCCCCcceeeec-ccCcceeeEeeeeecccC
Q psy1285          83 DVRKFSNKTAQR-NTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        83 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~  112 (118)
                      .++++.++..+. .|...|+++.|+.....+
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~Sqi  321 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQI  321 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchh
Confidence            999999999998 999999999998776554

>KOG1036|consensus

Probab=99.38  E-value=5.9e-12  Score=81.64  Aligned_cols=79  Identities=24%  Similarity=0.336  Sum_probs=61.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +.+.||.||++|+..     .. ...+..|...+.|+.+++....+++|+.|++|++||.+....               
T Consensus        70 ~G~~dg~vr~~Dln~-----~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v  143 (323)
T KOG1036|consen   70 TGGLDGQVRRYDLNT-----GN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV  143 (323)
T ss_pred             EeccCceEEEEEecC-----Cc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec
Confidence            677899999999986     22 234567999999999999888999999999999999995322               


Q ss_pred             -----cceecCCcEEEEeCCCCcce
Q psy1285          71 -----AANSKDQTIKLWDVRKFSNK   90 (118)
Q Consensus        71 -----~s~~~d~~i~iwd~~~~~~~   90 (118)
                           +.|+.|..+.+||+|+....
T Consensus       144 ~g~~LvVg~~~r~v~iyDLRn~~~~  168 (323)
T KOG1036|consen  144 SGNRLVVGTSDRKVLIYDLRNLDEP  168 (323)
T ss_pred             cCCEEEEeecCceEEEEEcccccch
Confidence                 45566666666666665544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.37  E-value=2.2e-11  Score=77.81  Aligned_cols=98  Identities=30%  Similarity=0.389  Sum_probs=81.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++.||.+++|++..     ......+..|...+..+.|+++++.+++++.|+.+.+||+.....               
T Consensus        26 ~~~~~g~i~i~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~  100 (289)
T cd00200          26 TGSGDGTIKVWDLET-----GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA  100 (289)
T ss_pred             EeecCcEEEEEEeeC-----CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEE
Confidence            456699999999986     556677788999999999999999999999999999999986322               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                              ++++.++.|.+||+++......+..|...+..+.|++.
T Consensus       101 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  146 (289)
T cd00200         101 FSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD  146 (289)
T ss_pred             EcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc
Confidence                    44445999999999988877777778878888888764

>KOG0772|consensus

Probab=99.37  E-value=1e-12  Score=90.25  Aligned_cols=101  Identities=21%  Similarity=0.291  Sum_probs=72.1

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeec-----CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLA-----GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------   70 (118)
                      .|++.||++||||+...    ......+.     +-.-.+...+|++++..+|+|+.||+|.+|+..+...         
T Consensus       285 lT~s~DgtlRiWdv~~~----k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A  360 (641)
T KOG0772|consen  285 LTCSYDGTLRIWDVNNT----KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDA  360 (641)
T ss_pred             EEecCCCcEEEEecCCc----hhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeec
Confidence            48999999999999862    12222222     2233577889999999999999999999999764321         


Q ss_pred             -------------------cceecCCcEEEEeCCCCcceeeec-c--cCcceeeEeeeeec
Q psy1285          71 -------------------AANSKDQTIKLWDVRKFSNKTAQR-N--TFRAVCEQNWEYRR  109 (118)
Q Consensus        71 -------------------~s~~~d~~i~iwd~~~~~~~~~~~-~--~~~~v~~~~~~~~~  109 (118)
                                         ++=+.|.++++||+|+++.+.... +  ...+-+.+.|++.-
T Consensus       361 H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~  421 (641)
T KOG0772|consen  361 HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD  421 (641)
T ss_pred             cCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc
Confidence                               556789999999999998765332 2  22345566666543

>KOG0278|consensus

Probab=99.37  E-value=1.4e-13  Score=87.45  Aligned_cols=93  Identities=19%  Similarity=0.347  Sum_probs=77.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ++++|-+.++||.-+     +..++.+. |...|..++|+.|.++|++|+.++.+++||++++..               
T Consensus        76 saaadftakvw~a~t-----gdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v  149 (334)
T KOG0278|consen   76 SAAADFTAKVWDAVT-----GDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTV  149 (334)
T ss_pred             hhcccchhhhhhhhh-----hhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeE
Confidence            688899999999987     67777776 999999999999999999999999999999987654               


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeecccCcceeeEee
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNW  105 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  105 (118)
                               .+.+.|++||+||.|++.....+. ...+|++++.
T Consensus       150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEv  192 (334)
T KOG0278|consen  150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEV  192 (334)
T ss_pred             EEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceee
Confidence                     566889999999999999887665 2223444443

>KOG0289|consensus

Probab=99.36  E-value=7.6e-12  Score=84.46  Aligned_cols=97  Identities=16%  Similarity=0.193  Sum_probs=84.7

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      .+++.|..++||....     .........|.++|..+..+|.|.||++++.|++....|+++...              
T Consensus       277 ~~aSad~~i~vws~~~-----~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t  351 (506)
T KOG0289|consen  277 ITASADEIIRVWSVPL-----SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT  351 (506)
T ss_pred             eecCCcceEEeecccc-----ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence            3889999999999976     334445667999999999999999999999999999999987654              


Q ss_pred             -----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                                 .+|..|+.|+|||++.+.....|.+|.++|..+.|+
T Consensus       352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~Fs  398 (506)
T KOG0289|consen  352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFS  398 (506)
T ss_pred             EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEec
Confidence                       678889999999999999988999999988877765

>KOG4378|consensus

Probab=99.36  E-value=5.6e-12  Score=86.54  Aligned_cols=99  Identities=17%  Similarity=0.203  Sum_probs=82.8

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceee-ecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGV-LAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      .+|+.+|.|.+||+..     ..+.+. ...|..+...++|+| +..+|++.+.|.+|.+||.+....            
T Consensus       181 ~~asd~G~VtlwDv~g-----~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plst  255 (673)
T KOG4378|consen  181 SIASDKGAVTLWDVQG-----MSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLST  255 (673)
T ss_pred             EeeccCCeEEEEeccC-----CCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcce
Confidence            3899999999999986     445443 457999999999999 566788999999999999986433            


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeec-ccCcceeeEeeeee
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQR-NTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~  108 (118)
                                +.|...|.|..||+|..+.+.... .|...|+++.|.+.
T Consensus       256 vaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  256 VAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             eeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence                      677889999999999988776654 89999999999765

>KOG0307|consensus

Probab=99.36  E-value=1.8e-12  Score=95.10  Aligned_cols=105  Identities=17%  Similarity=0.236  Sum_probs=82.4

Q ss_pred             ccccCceEEEEeCCCC-CCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTL-NETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      ....||.|-+||.... .....+.+.+...|.+.|..++|++ +++.||+|+.||.|.|||+.+...             
T Consensus        85 GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI  164 (1049)
T KOG0307|consen   85 GGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEI  164 (1049)
T ss_pred             ccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccc
Confidence            3456899999999863 1223456677888999999999999 456999999999999999987543             


Q ss_pred             -------------cceecCCcEEEEeCCCCcceeeecccCc--ceeeEeeeeecc
Q psy1285          71 -------------AANSKDQTIKLWDVRKFSNKTAQRNTFR--AVCEQNWEYRRE  110 (118)
Q Consensus        71 -------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~  110 (118)
                                   ++++.++++.|||+|..+.+..+..+..  .+..+.|++..-
T Consensus       165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a  219 (1049)
T KOG0307|consen  165 KCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA  219 (1049)
T ss_pred             eEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence                         7888899999999999988877764443  356777776543

>KOG0973|consensus

Probab=99.35  E-value=4.6e-12  Score=92.45  Aligned_cols=106  Identities=16%  Similarity=0.324  Sum_probs=87.0

Q ss_pred             cCceEEEEeCCCCCC-------CCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC------C-C----c
Q psy1285           9 SLVTCFVWDRRTLNE-------TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------F-N----G   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~-~----~   70 (118)
                      .|+.++||.......       ....++.+...|.+.|.|+.|+|||.+||+|+.|+.|.+|....      + .    .
T Consensus        35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~  114 (942)
T KOG0973|consen   35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAK  114 (942)
T ss_pred             ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccc
Confidence            678888999875321       12445566778999999999999999999999999999999873      1 0    0


Q ss_pred             ------------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccCcc
Q psy1285          71 ------------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPR  114 (118)
Q Consensus        71 ------------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  114 (118)
                                                    ++++.|++|.+||.+++.....+.+|...|-.+.||+.-.-+..
T Consensus       115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~AS  188 (942)
T KOG0973|consen  115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFAS  188 (942)
T ss_pred             ccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeee
Confidence                                          88999999999999999888899999999999999986655443

>KOG0283|consensus

Probab=99.35  E-value=4.9e-12  Score=90.24  Aligned_cols=82  Identities=20%  Similarity=0.278  Sum_probs=70.5

Q ss_pred             eeeec-CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------------------------------
Q psy1285          29 VGVLA-GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------------------------------   70 (118)
Q Consensus        29 ~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------------------------------   70 (118)
                      .+.+. +|.+.|.++.|++||++||+||.|+.|+||.+..-..                                     
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            44566 8999999999999999999999999999998865000                                     


Q ss_pred             ---------------------------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEee
Q psy1285          71 ---------------------------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNW  105 (118)
Q Consensus        71 ---------------------------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  105 (118)
                                                                   .+++-|.+||+|++....++..|. |.+.|++++|
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF  417 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF  417 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence                                                         788999999999999999998885 9999999999


Q ss_pred             eeeccc
Q psy1285         106 EYRREN  111 (118)
Q Consensus       106 ~~~~~~  111 (118)
                      ++.-..
T Consensus       418 nPvDDr  423 (712)
T KOG0283|consen  418 NPVDDR  423 (712)
T ss_pred             cccCCC
Confidence            876544

>KOG0321|consensus

Probab=99.34  E-value=1.9e-12  Score=90.61  Aligned_cols=58  Identities=24%  Similarity=0.306  Sum_probs=50.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceee--ecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGV--LAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      +++.|.+++.||+..     ......  +.+|.+.|.+++|.| +...+++|+.||.|.|||++..
T Consensus       117 sasGDsT~r~Wdvk~-----s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n  177 (720)
T KOG0321|consen  117 SASGDSTIRPWDVKT-----SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN  177 (720)
T ss_pred             EccCCceeeeeeecc-----ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence            889999999999997     444443  779999999999998 5678899999999999999853

>KOG0300|consensus

Probab=99.34  E-value=2.3e-12  Score=84.50  Aligned_cols=91  Identities=21%  Similarity=0.313  Sum_probs=79.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEe------cCCCCc---------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNG---------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd------~~~~~~---------   70 (118)
                      +|+.|.+.+||.+..     +.++..+.+|.+.|++++|++++.++++++.|++..||.      +..+..         
T Consensus       165 tASADhTA~iWs~Es-----g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE  239 (481)
T KOG0300|consen  165 TASADHTARIWSLES-----GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE  239 (481)
T ss_pred             ecccccceeEEeecc-----ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence            899999999999998     788889999999999999999999999999999999997      222111         


Q ss_pred             ------------------------------------------------cceecCCcEEEEeCCCCcceeeecccCccee
Q psy1285          71 ------------------------------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVC  101 (118)
Q Consensus        71 ------------------------------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  101 (118)
                                                                      +++++|.+-.+||+.++.....+.+|....+
T Consensus       240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt  318 (481)
T KOG0300|consen  240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT  318 (481)
T ss_pred             hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence                                                            7889999999999999999888777766544

>KOG0303|consensus

Probab=99.34  E-value=6e-12  Score=84.16  Aligned_cols=93  Identities=18%  Similarity=0.293  Sum_probs=77.6

Q ss_pred             ccccCceEEEEeCCCCC--CCCCCceeeecCccCcEEEEEeCCC-CCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           6 QVASLVTCFVWDRRTLN--ETTAKPVGVLAGHRDGITFIDPKGD-SRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      +.|.|.+|.||++....  .+..+++..+.+|..+|.-+.|+|. .+.|++++.|++|.+||+.+...            
T Consensus        99 SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S  178 (472)
T KOG0303|consen   99 SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYS  178 (472)
T ss_pred             cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEE
Confidence            67889999999997522  2345788899999999999999995 56788999999999999988663            


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeecccCc
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQRNTFR   98 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~   98 (118)
                                ++++.|.+|||||.|+++....-..|.+
T Consensus       179 ~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG  216 (472)
T KOG0303|consen  179 MSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG  216 (472)
T ss_pred             EEeccCCceeeeecccceeEEEcCCCCcEeeecccccC
Confidence                      7889999999999999998776555543

>KOG0278|consensus

Probab=99.34  E-value=3e-12  Score=81.46  Aligned_cols=99  Identities=19%  Similarity=0.248  Sum_probs=80.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      |.+.+.-+||||++.+    ..+..++.+|.+.|..+-|....+++++...|++|++||.++...               
T Consensus       117 tgg~ekllrvfdln~p----~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEv  192 (334)
T KOG0278|consen  117 TGGQEKLLRVFDLNRP----KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEV  192 (334)
T ss_pred             ccchHHHhhhhhccCC----CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceee
Confidence            6777889999999874    566677899999999999998888999989999999999997543               


Q ss_pred             -----------------------------------------------cceecCCcEEEEeCCCCcceeee-cccCcceee
Q psy1285          71 -----------------------------------------------AANSKDQTIKLWDVRKFSNKTAQ-RNTFRAVCE  102 (118)
Q Consensus        71 -----------------------------------------------~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~  102 (118)
                                                                     ++|+.|..+..||+.++..+..+ .+|.++|.+
T Consensus       193 s~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhc  272 (334)
T KOG0278|consen  193 SQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHC  272 (334)
T ss_pred             ccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEE
Confidence                                                           56677777777888777777665 577777777


Q ss_pred             Eeeeee
Q psy1285         103 QNWEYR  108 (118)
Q Consensus       103 ~~~~~~  108 (118)
                      +.|++.
T Consensus       273 VrFSPd  278 (334)
T KOG0278|consen  273 VRFSPD  278 (334)
T ss_pred             EEECCC
Confidence            777654

>KOG0289|consensus

Probab=99.33  E-value=1.3e-11  Score=83.37  Aligned_cols=95  Identities=15%  Similarity=0.292  Sum_probs=71.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +...|+.|+|||+..     ...+..|.+|.++|..++|+.+|-+|+++..|+.|++||+|....               
T Consensus       364 tgt~d~~vkiwdlks-----~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~  438 (506)
T KOG0289|consen  364 TGTPDGVVKIWDLKS-----QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSL  438 (506)
T ss_pred             ccCCCceEEEEEcCC-----ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeE
Confidence            778899999999987     456667889999999999999999999999999999999996543               


Q ss_pred             -------cceecCCcEEEEeCC----CCcceeeecccCcceeeEee
Q psy1285          71 -------AANSKDQTIKLWDVR----KFSNKTAQRNTFRAVCEQNW  105 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~----~~~~~~~~~~~~~~v~~~~~  105 (118)
                             .-+.....++||-..    ..+....+..|.+..+.+.|
T Consensus       439 ~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F  484 (506)
T KOG0289|consen  439 SFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRF  484 (506)
T ss_pred             EEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeee
Confidence                   111223456666655    55666666666655555544

>KOG0640|consensus

Probab=99.33  E-value=5.2e-12  Score=82.51  Aligned_cols=63  Identities=24%  Similarity=0.247  Sum_probs=52.0

Q ss_pred             ccccCceEEEEeCCC------------CCC-CCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRT------------LNE-TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~------------~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      |.+.|..|+|.|+..            +.. .....++++..|-+.|+++.|+|....|++++.|++|++||+...
T Consensus       129 TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~  204 (430)
T KOG0640|consen  129 TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKT  204 (430)
T ss_pred             ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccH
Confidence            788999999999862            111 122456788889999999999999999999999999999999864

>KOG0639|consensus

Probab=99.32  E-value=2.1e-11  Score=83.90  Aligned_cols=98  Identities=18%  Similarity=0.244  Sum_probs=78.7

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecC--ccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAG--HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      ++..|-|+|||+....  ...++..+..  ....|.+....|||+-|++|+.-.++.|||+.....              
T Consensus       436 TgGkgcVKVWdis~pg--~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCy  513 (705)
T KOG0639|consen  436 TGGKGCVKVWDISQPG--NKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY  513 (705)
T ss_pred             ecCCCeEEEeeccCCC--CCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhh
Confidence            4567899999998642  2445554543  356788999999999999999999999999976543              


Q ss_pred             -----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                                 .+++.||.|.|||+++...+..+.+|.+.+.+++.+
T Consensus       514 ALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis  560 (705)
T KOG0639|consen  514 ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  560 (705)
T ss_pred             hhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence                       567789999999999999999999998877776554

>KOG0642|consensus

Probab=99.32  E-value=7.4e-12  Score=86.53  Aligned_cols=83  Identities=22%  Similarity=0.378  Sum_probs=69.4

Q ss_pred             ccccCceEEEEeCCCC---CCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           6 QVASLVTCFVWDRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      +++-||++++|.+...   .....+++.++++|.++|.|+++.+++.++.+|+.||+|+.|++.. +.            
T Consensus       311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~-n~dp~ds~dp~vl~  389 (577)
T KOG0642|consen  311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPP-NQDPDDSYDPSVLS  389 (577)
T ss_pred             EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCC-CCCcccccCcchhc
Confidence            8999999999999431   1223567889999999999999999999999999999999997652 11            


Q ss_pred             ----------------------cceecCCcEEEEeCCCCcc
Q psy1285          71 ----------------------AANSKDQTIKLWDVRKFSN   89 (118)
Q Consensus        71 ----------------------~s~~~d~~i~iwd~~~~~~   89 (118)
                                            .+++.||+++.|+.....+
T Consensus       390 ~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  390 GTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP  430 (577)
T ss_pred             cceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence                                  6778899999999887666

>KOG0296|consensus

Probab=99.31  E-value=3.3e-11  Score=79.81  Aligned_cols=91  Identities=19%  Similarity=0.269  Sum_probs=79.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      |.+.|....+|++.+     ++....+.+|++.|.++.|+.+|.+||+|+.+|.|+||+..+...               
T Consensus        81 TGGgDD~AflW~~~~-----ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~  155 (399)
T KOG0296|consen   81 TGGGDDLAFLWDIST-----GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK  155 (399)
T ss_pred             ecCCCceEEEEEccC-----CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEE
Confidence            778899999999988     667788999999999999999999999999999999999987533               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCccee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVC  101 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  101 (118)
                              +.|+.||.+-+|.+.+....+.+.+|..+++
T Consensus       156 WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct  194 (399)
T KOG0296|consen  156 WHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCT  194 (399)
T ss_pred             ecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcc
Confidence                    7899999999999998766666667765555

>KOG0268|consensus

Probab=99.31  E-value=8e-12  Score=82.81  Aligned_cols=54  Identities=13%  Similarity=0.235  Sum_probs=47.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      +.|.||.|+|||+..     .+...++.+|.+.|..|++..  ..+.+++.|++|+.|.+.
T Consensus        84 SGs~DG~VkiWnlsq-----R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   84 SGSCDGEVKIWNLSQ-----RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             ccccCceEEEEehhh-----hhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence            788999999999987     788889999999999999986  566788899999999743

>KOG0306|consensus

Probab=99.30  E-value=1.7e-11  Score=87.43  Aligned_cols=103  Identities=16%  Similarity=0.193  Sum_probs=83.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCc--e------eeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKP--V------GVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~--~------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------   70 (118)
                      |+|+|.+|++||........+..  +      .+++ -.+.|.|+.+|||+++||.+--|++|++|-+.+..-       
T Consensus       471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH  549 (888)
T KOG0306|consen  471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH  549 (888)
T ss_pred             EecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc
Confidence            89999999999987532211111  1      1222 457899999999999999999999999998876443       


Q ss_pred             ----------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeec
Q psy1285          71 ----------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 ----------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  109 (118)
                                      ++||.|.+|+||-+.-+.+.+.+.+|.+.|.++.|-++-
T Consensus       550 kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~  604 (888)
T KOG0306|consen  550 KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT  604 (888)
T ss_pred             ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccc
Confidence                            889999999999999999999999999999999987643

>KOG0294|consensus

Probab=99.30  E-value=2.6e-11  Score=79.10  Aligned_cols=94  Identities=14%  Similarity=0.132  Sum_probs=82.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++.||.|-||+...     -+.+..+++|.++|..++.+|.+++.++.+.|+.+++||+-+++.               
T Consensus       102 S~sdDG~i~iw~~~~-----W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w  176 (362)
T KOG0294|consen  102 SGSDDGHIIIWRVGS-----WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSW  176 (362)
T ss_pred             eecCCCcEEEEEcCC-----eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEE
Confidence            578999999999987     788999999999999999999999999999999999999976543               


Q ss_pred             ----------------------------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEe
Q psy1285          71 ----------------------------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQN  104 (118)
Q Consensus        71 ----------------------------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  104 (118)
                                                                    ++|..|..|++||.....+...+.+|.+.|-.+.
T Consensus       177 ~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~  256 (362)
T KOG0294|consen  177 SPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIA  256 (362)
T ss_pred             cCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeE
Confidence                                                          6788899999999998877777777876665544

>KOG0645|consensus

Probab=99.29  E-value=6.9e-11  Score=75.83  Aligned_cols=102  Identities=18%  Similarity=0.284  Sum_probs=79.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeee-cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC--c------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVL-AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN--G------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~------------   70 (118)
                      +++.|..||||+...++  .-.....+ .+|+..|.+++|+|.|++|++++.|.++.||.-....  +            
T Consensus        32 scg~Dk~vriw~~~~~~--s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK  109 (312)
T KOG0645|consen   32 SCGTDKAVRIWSTSSGD--SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK  109 (312)
T ss_pred             eecCCceEEEEecCCCC--cEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee
Confidence            78899999999998521  12233333 3799999999999999999999999999999755321  1            


Q ss_pred             -----------cceecCCcEEEEeCCCCccee---eecccCcceeeEeeeeec
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNKT---AQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~  109 (118)
                                 ++++.|+.|-||.+.......   -+..|.+.|..+.|++..
T Consensus       110 ~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~  162 (312)
T KOG0645|consen  110 CVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE  162 (312)
T ss_pred             EEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence                       889999999999998555443   445889999999998743

>KOG0771|consensus

Probab=99.28  E-value=1.7e-11  Score=82.11  Aligned_cols=100  Identities=15%  Similarity=0.207  Sum_probs=85.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +.+.||++|||+...     ...+....+|.+.|.++.|+||+..|++-+.| ..+||+..+...               
T Consensus       161 tgg~dg~lRv~~~Ps-----~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~  234 (398)
T KOG0771|consen  161 TGGTDGTLRVWEWPS-----MLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSS  234 (398)
T ss_pred             eccccceEEEEecCc-----chhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhh
Confidence            788999999999765     56666667899999999999999999999999 999999987521               


Q ss_pred             --------------------------------------------------------------cceecCCcEEEEeCCCCc
Q psy1285          71 --------------------------------------------------------------AANSKDQTIKLWDVRKFS   88 (118)
Q Consensus        71 --------------------------------------------------------------~s~~~d~~i~iwd~~~~~   88 (118)
                                                                                    +.|+.||.|-|++....+
T Consensus       235 cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq  314 (398)
T KOG0771|consen  235 CRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ  314 (398)
T ss_pred             ceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee
Confidence                                                                          667889999999999999


Q ss_pred             ceeeec-ccCcceeeEeeeeeccc
Q psy1285          89 NKTAQR-NTFRAVCEQNWEYRREN  111 (118)
Q Consensus        89 ~~~~~~-~~~~~v~~~~~~~~~~~  111 (118)
                      ....++ .|...|+.+.|++.-..
T Consensus       315 ~~~~vk~aH~~~VT~ltF~Pdsr~  338 (398)
T KOG0771|consen  315 RLQYVKEAHLGFVTGLTFSPDSRY  338 (398)
T ss_pred             eeEeehhhheeeeeeEEEcCCcCc
Confidence            888776 88889999999875443

>KOG0646|consensus

Probab=99.27  E-value=2.3e-11  Score=82.50  Aligned_cols=81  Identities=26%  Similarity=0.426  Sum_probs=70.8

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      -.|.+.+|.+.+     +..+..+.+|-..|.|+.|+-|+.++.+|+.||.|.+|.+...-.                  
T Consensus       101 i~g~lYlWelss-----G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl  175 (476)
T KOG0646|consen  101 ISGNLYLWELSS-----GILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL  175 (476)
T ss_pred             ccCcEEEEEecc-----ccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc
Confidence            458999999998     888888899999999999999999999999999999998754211                  


Q ss_pred             ----------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 ----------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 ----------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                                      +++|.|.++++||+..+..+..+.
T Consensus       176 sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~  215 (476)
T KOG0646|consen  176 SITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT  215 (476)
T ss_pred             eeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence                            778999999999999998876554

>KOG0305|consensus

Probab=99.26  E-value=4e-11  Score=83.13  Aligned_cols=100  Identities=25%  Similarity=0.261  Sum_probs=88.2

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecC-ccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc----------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAG-HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----------------   70 (118)
                      ..+|.|.|||...     ...+..+.+ |...|.+++|+  +..+.+|+.|+.|..+|++....                
T Consensus       236 ~~~g~v~iwD~~~-----~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLk  308 (484)
T KOG0305|consen  236 TSDGTVQIWDVKE-----QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLK  308 (484)
T ss_pred             ecCCeEEEEehhh-----ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeE
Confidence            4589999999987     566677777 99999999999  66889999999999999986443                


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccCcc
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPR  114 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  114 (118)
                              ++|+.|+.+.|||.....+...+..|...|-.+.|++-...+.+
T Consensus       309 ws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLA  360 (484)
T KOG0305|consen  309 WSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLA  360 (484)
T ss_pred             ECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceE
Confidence                    89999999999999988989999999999999999998888755

>KOG0308|consensus

Probab=99.26  E-value=3e-11  Score=84.97  Aligned_cols=80  Identities=29%  Similarity=0.430  Sum_probs=70.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ..+..+.+|+||.+.     .+.+..+++|...|.++..+.||+.+++++.||+|++||+...++               
T Consensus       188 sGgtek~lr~wDprt-----~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~  262 (735)
T KOG0308|consen  188 SGGTEKDLRLWDPRT-----CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ  262 (735)
T ss_pred             ecCcccceEEecccc-----ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe
Confidence            355678999999998     777888999999999999999999999999999999999987665               


Q ss_pred             --------cceecCCcEEEEeCCCCcce
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNK   90 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~   90 (118)
                              .+|+.|+.|..=|++++...
T Consensus       263 ~~~sf~~vYsG~rd~~i~~Tdl~n~~~~  290 (735)
T KOG0308|consen  263 SSPSFTHVYSGGRDGNIYRTDLRNPAKS  290 (735)
T ss_pred             eCCCcceEEecCCCCcEEecccCCchhh
Confidence                    78899999999999996543

>KOG0318|consensus

Probab=99.26  E-value=1.1e-10  Score=80.55  Aligned_cols=97  Identities=20%  Similarity=0.214  Sum_probs=80.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      -.+.|+.|.||.+....   ......+..|.+.|.+++||||+.+|++|...+.+.+||+.+...               
T Consensus       460 VGG~Dgkvhvysl~g~~---l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~  536 (603)
T KOG0318|consen  460 VGGQDGKVHVYSLSGDE---LKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV  536 (603)
T ss_pred             EecccceEEEEEecCCc---ccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence            34679999999998621   233344567999999999999999999999999999999986543               


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeec-ccCcceeeEee
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQR-NTFRAVCEQNW  105 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~  105 (118)
                               ++|+-|-.|.||++..+.....+. .|...|+.+.|
T Consensus       537 aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~w  581 (603)
T KOG0318|consen  537 AWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAW  581 (603)
T ss_pred             EeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEE
Confidence                     899999999999999887765555 88888999999

>KOG0294|consensus

Probab=99.25  E-value=5.2e-11  Score=77.74  Aligned_cols=96  Identities=23%  Similarity=0.322  Sum_probs=75.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCC--CeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDS--RHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      +.|+|.+|+|||++.     ......+-.|.+.|.++.|.+.-  .+|++|+.||.|.+|+......             
T Consensus        58 SGssDetI~IYDm~k-----~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~  132 (362)
T KOG0294|consen   58 SGSSDETIHIYDMRK-----RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTD  132 (362)
T ss_pred             ccCCCCcEEEEeccc-----hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccce
Confidence            678899999999997     56666677799999999998744  4999999999999999886533             


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                                .+.+.|+.+++||+-.++...... .....+.+.|++
T Consensus       133 lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~  178 (362)
T KOG0294|consen  133 LSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSP  178 (362)
T ss_pred             eEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcC
Confidence                      677889999999998887654443 233344567764

>KOG0649|consensus

Probab=99.25  E-value=1.5e-10  Score=73.66  Aligned_cols=84  Identities=14%  Similarity=0.267  Sum_probs=70.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +|+.|+.+.-||+..     +...+++++|.+.+.++.--.....+++|+.||++++||.++...               
T Consensus       131 ~AgGD~~~y~~dlE~-----G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp  205 (325)
T KOG0649|consen  131 FAGGDGVIYQVDLED-----GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRP  205 (325)
T ss_pred             EecCCeEEEEEEecC-----CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCc
Confidence            789999999999988     788899999999999998854455788999999999999997654               


Q ss_pred             ---------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 ---------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 ---------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                                     ..++....+.+|++|..++...++
T Consensus       206 ~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  206 DWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             ccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEe
Confidence                           334456689999999988776554

>KOG1188|consensus

Probab=99.23  E-value=4.9e-11  Score=78.47  Aligned_cols=99  Identities=22%  Similarity=0.315  Sum_probs=80.4

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC--CCCeEEEeeCCCcEEEEecCCCCc----------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG--DSRHLISNSKDQTIKLWDVRKFNG----------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~----------------   70 (118)
                      +.|.|++||..+     +..+..++++...++.++|..  ....+.+|+.||+|++||+|....                
T Consensus        48 Sngsv~lyd~~t-----g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~  122 (376)
T KOG1188|consen   48 SNGSVRLYDKGT-----GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFIC  122 (376)
T ss_pred             cCCeEEEEeccc-----hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceE
Confidence            468999999987     788888999999999999965  456788999999999999997533                


Q ss_pred             ----------cce----ecCCcEEEEeCCCCcc-eeee-cccCcceeeEeeeeecccC
Q psy1285          71 ----------AAN----SKDQTIKLWDVRKFSN-KTAQ-RNTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        71 ----------~s~----~~d~~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~  112 (118)
                                ++|    ..+-.|.+||+|..+. +..+ +.|...|+++.|++..+++
T Consensus       123 ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl  180 (376)
T KOG1188|consen  123 LDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL  180 (376)
T ss_pred             eeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe
Confidence                      222    2356799999999887 4444 4899999999999888775

>KOG1007|consensus

Probab=99.23  E-value=9e-11  Score=76.10  Aligned_cols=103  Identities=19%  Similarity=0.305  Sum_probs=75.2

Q ss_pred             cCceEEEEeCCCCCCCCCCceee-ecCccCcEEEEEeCC--CCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGV-LAGHRDGITFIDPKG--DSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .|..|.+|++........+.... -.++.....+-+|+|  +++.+++. .|+++..||+|+...               
T Consensus       142 ~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdl  220 (370)
T KOG1007|consen  142 DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDL  220 (370)
T ss_pred             ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeec
Confidence            37899999998642211111111 123566788899998  78777765 688999999997543               


Q ss_pred             ----------cceecCCcEEEEeCCCCcceee-ecccCcceeeEeeeeecccCcccc
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTA-QRNTFRAVCEQNWEYRRENVPRQL  116 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~  116 (118)
                                +++++|+.|+|||.|+.+.+.. +..    ....+|++|+++...|+
T Consensus       221 DfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~----HsHWvW~VRfn~~hdqL  273 (370)
T KOG1007|consen  221 DFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG----HSHWVWAVRFNPEHDQL  273 (370)
T ss_pred             cCCCCceEEEEEcCCCccEEEEeccCCCccccccCC----CceEEEEEEecCccceE
Confidence                      8899999999999999887643 333    45788999999988776

>KOG0641|consensus

Probab=99.22  E-value=1.5e-10  Score=73.09  Aligned_cols=82  Identities=21%  Similarity=0.256  Sum_probs=71.5

Q ss_pred             CCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------------------cceec
Q psy1285          26 AKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------------------AANSK   75 (118)
Q Consensus        26 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------------------~s~~~   75 (118)
                      ++..+.+.+|.+.|..+ ++.++-++++|+.|.+|+.||++-+.+                              ++|-.
T Consensus       173 g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~  251 (350)
T KOG0641|consen  173 GQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA  251 (350)
T ss_pred             CCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC
Confidence            78888899999999887 566799999999999999999986543                              66777


Q ss_pred             CCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          76 DQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        76 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                      |....+||+|.++.+..+-.|...|.++.|++.
T Consensus       252 dssc~lydirg~r~iq~f~phsadir~vrfsp~  284 (350)
T KOG0641|consen  252 DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG  284 (350)
T ss_pred             CCceEEEEeeCCceeeeeCCCccceeEEEeCCC
Confidence            999999999999999999889988998888753

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.22  E-value=4e-11  Score=55.97  Aligned_cols=38  Identities=39%  Similarity=0.554  Sum_probs=35.5

Q ss_pred             CceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEe
Q psy1285          27 KPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD   64 (118)
Q Consensus        27 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd   64 (118)
                      +++..+.+|.+.|.+++|+|+++++++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45678899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0268|consensus

Probab=99.21  E-value=1.6e-11  Score=81.46  Aligned_cols=85  Identities=19%  Similarity=0.353  Sum_probs=71.1

Q ss_pred             CCCcc-cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc----------
Q psy1285           2 VTKPQ-VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----------   70 (118)
Q Consensus         2 ~~~~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----------   70 (118)
                      ||..+ ++.|..+.++|++..    ..++....+|-+.|.+++|||.|..+++|+.|++|+||..+....          
T Consensus       241 afnF~~a~ED~nlY~~DmR~l----~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq  316 (433)
T KOG0268|consen  241 AFNFVAANEDHNLYTYDMRNL----SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ  316 (433)
T ss_pred             ccceeeccccccceehhhhhh----cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhh
Confidence            44454 455889999999864    677888889999999999999999999999999999999986543          


Q ss_pred             --------------cceecCCcEEEEeCCCCcce
Q psy1285          71 --------------AANSKDQTIKLWDVRKFSNK   90 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~~~   90 (118)
                                    ++||+|+.|++|.-...+.+
T Consensus       317 ~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  317 HVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             eeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence                          89999999999987655443

>KOG0290|consensus

Probab=99.21  E-value=1.9e-10  Score=74.63  Aligned_cols=64  Identities=20%  Similarity=0.264  Sum_probs=50.3

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCC-CeEEEeeCCCcEEEEecCCCCc
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDS-RHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      .+.|-|-++.|||+..+-  .+..-..+-+|...|+.++|...+ ..+++.+.||++++||+|....
T Consensus       167 gtSSiDTTCTiWdie~~~--~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  167 GTSSIDTTCTIWDIETGV--SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             EeecccCeEEEEEEeecc--ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            377889999999998731  122344566899999999998744 5789999999999999997543

>KOG2096|consensus

Probab=99.20  E-value=5.9e-11  Score=77.86  Aligned_cols=57  Identities=32%  Similarity=0.551  Sum_probs=45.0

Q ss_pred             EEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285          14 FVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus        14 ~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      +-|+.++......-.+..+++|.+.|.+++|+.||..|++++.|++|++|+++.+..
T Consensus        64 ~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~  120 (420)
T KOG2096|consen   64 DQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN  120 (420)
T ss_pred             hhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh
Confidence            346665543333334556889999999999999999999999999999999987543

>KOG0303|consensus

Probab=99.20  E-value=1.8e-10  Score=77.21  Aligned_cols=82  Identities=22%  Similarity=0.320  Sum_probs=69.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|.+|.||++.+     ++.+.++. |.+-|.++.|+.+|.+|++.+.|++|++||.+....               
T Consensus       149 sag~Dn~v~iWnv~t-----geali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra  222 (472)
T KOG0303|consen  149 SAGSDNTVSIWNVGT-----GEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA  222 (472)
T ss_pred             hccCCceEEEEeccC-----CceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence            789999999999988     67777777 999999999999999999999999999999997543               


Q ss_pred             ------------cceecCCcEEEEeCCCCcceeee
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSNKTAQ   93 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~~~~~   93 (118)
                                  .+-..+..+-+||..+.+.+..+
T Consensus       223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~  257 (472)
T KOG0303|consen  223 IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIAL  257 (472)
T ss_pred             EEeccCceeeeccccccccceeccCcccccCccee
Confidence                        33356889999998877766433

>KOG1034|consensus

Probab=99.20  E-value=1.2e-10  Score=76.46  Aligned_cols=56  Identities=27%  Similarity=0.463  Sum_probs=50.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceee---ecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGV---LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      ++|.|..||+|++++     ...+..   ..+|.+.|.+++|++++..+++++.|.++++|++.
T Consensus       153 s~SkD~svRlwnI~~-----~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  153 SASKDHSVRLWNIQT-----DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             EecCCceEEEEeccC-----CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            789999999999997     555544   46799999999999999999999999999999998

>KOG2445|consensus

Probab=99.20  E-value=2.5e-10  Score=74.45  Aligned_cols=104  Identities=17%  Similarity=0.231  Sum_probs=75.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEe-CC-CCCeEEEeeCCCcEEEEecCC--CCc-----------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDP-KG-DSRHLISNSKDQTIKLWDVRK--FNG-----------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~-~~~~l~s~~~d~~i~~wd~~~--~~~-----------   70 (118)
                      |+|+|++++|||.+. ...+-......+.|.+.|..+.| +| -|+.+|+++.|+++.||.-..  ...           
T Consensus        30 tCSsDq~vkI~d~~~-~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl  108 (361)
T KOG2445|consen   30 TCSSDQTVKIWDSTS-DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTL  108 (361)
T ss_pred             eccCCCcEEEEeccC-CCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEe
Confidence            899999999999754 22334556678899999999999 45 489999999999999997632  111           


Q ss_pred             ---------------------cceecCCcEEEEeCCCCccee------eec-------ccCcceeeEeeeeecc
Q psy1285          71 ---------------------AANSKDQTIKLWDVRKFSNKT------AQR-------NTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 ---------------------~s~~~d~~i~iwd~~~~~~~~------~~~-------~~~~~v~~~~~~~~~~  110 (118)
                                           ++++.||.+|||+.-.+-.+.      .+.       .+..+..++.|++.+-
T Consensus       109 ~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~  182 (361)
T KOG2445|consen  109 VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRM  182 (361)
T ss_pred             ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccc
Confidence                                 788899999999765443322      221       2445667888875443

>KOG0973|consensus

Probab=99.20  E-value=1e-10  Score=85.67  Aligned_cols=57  Identities=23%  Similarity=0.395  Sum_probs=53.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      +++.|++|-||+.++     .+.+..+.+|++.|..+.|.|-|+++|+-+.|+++++|+..+
T Consensus       146 S~s~DnsViiwn~~t-----F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d  202 (942)
T KOG0973|consen  146 SVSLDNSVIIWNAKT-----FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD  202 (942)
T ss_pred             EecccceEEEEcccc-----ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc
Confidence            678999999999998     788889999999999999999999999999999999999765

>KOG1007|consensus

Probab=99.18  E-value=1.4e-10  Score=75.27  Aligned_cols=97  Identities=21%  Similarity=0.297  Sum_probs=73.2

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeee-cCccCcEEEEEeCCCCC-eEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVL-AGHRDGITFIDPKGDSR-HLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +.+|++++-||.++     ......+ .+|...|..+.|+|+.. +|++|+.||.|++||.|....              
T Consensus       189 tt~d~tl~~~D~RT-----~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  189 TTSDSTLQFWDLRT-----MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA  263 (370)
T ss_pred             EeCCCcEEEEEccc-----hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence            45689999999997     3333333 47888999999999765 578999999999999997543              


Q ss_pred             -----------cceecCCcEEEEeCCCCcc-----------------------------eeeecccCcceeeEeeeee
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSN-----------------------------KTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~-----------------------------~~~~~~~~~~v~~~~~~~~  108 (118)
                                 .+|+.|..|.+|....-..                             +..+..|.+.|..++|+-+
T Consensus       264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa  341 (370)
T KOG1007|consen  264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA  341 (370)
T ss_pred             EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence                       7889999999996543221                             1134567788889999744

>KOG1445|consensus

Probab=99.18  E-value=8.4e-11  Score=83.10  Aligned_cols=59  Identities=29%  Similarity=0.336  Sum_probs=54.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      +++.|.+|++||++.     +.....+.+|.+.|++++|||+|+.+++.+.||++++|+.++..
T Consensus       695 ~asyd~Ti~lWDl~~-----~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  695 VASYDSTIELWDLAN-----AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             hhhccceeeeeehhh-----hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence            788999999999997     67777789999999999999999999999999999999998654

>KOG0646|consensus

Probab=99.18  E-value=1.7e-10  Score=78.42  Aligned_cols=103  Identities=20%  Similarity=0.265  Sum_probs=83.0

Q ss_pred             cccccCceEEEEeCCC----CCCCCCCceeeecCccCcEEEEEeCC--CCCeEEEeeCCCcEEEEecCCCCc--------
Q psy1285           5 PQVASLVTCFVWDRRT----LNETTAKPVGVLAGHRDGITFIDPKG--DSRHLISNSKDQTIKLWDVRKFNG--------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~--------   70 (118)
                      .|+|.||.|++|++..    .+....++.+.+..|.-.|.++...+  ....+.+.+.|.++++||+.....        
T Consensus       139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~  218 (476)
T KOG0646|consen  139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS  218 (476)
T ss_pred             EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence            3899999999999863    11225678889999999999998865  346889999999999999987543        


Q ss_pred             --------------------------------------------------------------------------cceecC
Q psy1285          71 --------------------------------------------------------------------------AANSKD   76 (118)
Q Consensus        71 --------------------------------------------------------------------------~s~~~d   76 (118)
                                                                                                ++|+.|
T Consensus       219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d  298 (476)
T KOG0646|consen  219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED  298 (476)
T ss_pred             cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence                                                                                      788899


Q ss_pred             CcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          77 QTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                      |+|.|||+...+.++.+....++|+.+.+.+
T Consensus       299 g~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  299 GKVCVWDIYSKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             CCEEEEecchHHHHHHHhhhccccceeEeec
Confidence            9999999998888877765667777776643

>KOG0299|consensus

Probab=99.17  E-value=1.8e-10  Score=78.16  Aligned_cols=92  Identities=22%  Similarity=0.395  Sum_probs=71.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +.+.|..|.||+.++     .+++..+.+|.+.|.+++|-.....|.+++.|+++++|++.....               
T Consensus       219 tgg~d~~v~Iw~~~t-----~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  219 TGGRDRHVQIWDCDT-----LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             ecCCCceEEEecCcc-----cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            677788999999998     788888999999999999987777889999999999999976432               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeE
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQ  103 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  103 (118)
                              ..|+.|+++++|++-....+ .+.++.+.+.++
T Consensus       294 aL~reR~vtVGgrDrT~rlwKi~eesql-ifrg~~~sidcv  333 (479)
T KOG0299|consen  294 ALSRERCVTVGGRDRTVRLWKIPEESQL-IFRGGEGSIDCV  333 (479)
T ss_pred             hhcccceEEeccccceeEEEecccccee-eeeCCCCCeeeE
Confidence                    34568999999999433332 233444344433

>KOG1034|consensus

Probab=99.16  E-value=5.6e-11  Score=78.02  Aligned_cols=79  Identities=25%  Similarity=0.328  Sum_probs=68.3

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC-CCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD-SRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ++.-|.|||.|+.+     .+....+.+|.+.|+.+++.|+ .+++++++.|.+|++|++++..+               
T Consensus       111 ~G~~GvIrVid~~~-----~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL  185 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVS-----GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL  185 (385)
T ss_pred             ecceeEEEEEecch-----hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence            45679999999987     7788888999999999999995 56889999999999999998665               


Q ss_pred             -----------cceecCCcEEEEeCCCCcce
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNK   90 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~   90 (118)
                                 ++++.|.+|++|++...+..
T Consensus       186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~  216 (385)
T KOG1034|consen  186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFK  216 (385)
T ss_pred             EEEEcCCCCeeeccCCcceEEEEecChhHHh
Confidence                       78889999999999855443

>KOG4378|consensus

Probab=99.16  E-value=1.1e-10  Score=80.34  Aligned_cols=104  Identities=16%  Similarity=0.193  Sum_probs=86.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ..+..+.|+|||++.     .-..+.++.|++.|.++.++-...++|+++..|.|.|..+.+...               
T Consensus        96 sgG~~~~Vkiwdl~~-----kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll  170 (673)
T KOG4378|consen   96 SGGQSGCVKIWDLRA-----KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL  170 (673)
T ss_pred             ccCcCceeeehhhHH-----HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEe
Confidence            567789999999985     344456789999999999998888999999999999999876432               


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeec-ccCcceeeEeeeeecccCcc
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQR-NTFRAVCEQNWEYRRENVPR  114 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~  114 (118)
                                .+++++|.|.+||+....+...+. .|..+...+.|++..+-+..
T Consensus       171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v  225 (673)
T KOG4378|consen  171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV  225 (673)
T ss_pred             ecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence                      677899999999999988877664 88888888888877665543

>KOG4283|consensus

Probab=99.15  E-value=4.7e-10  Score=73.07  Aligned_cols=108  Identities=22%  Similarity=0.238  Sum_probs=85.3

Q ss_pred             ccccCceEEEEeCCCCCC--CCC-----Cc---eeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc----
Q psy1285           6 QVASLVTCFVWDRRTLNE--TTA-----KP---VGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG----   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~--~~~-----~~---~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~----   70 (118)
                      ..++||.+-+||+.....  ...     ..   ...-.+|.-.|..+.|=| |...+.+++-|.++++||..+...    
T Consensus        61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F  140 (397)
T KOG4283|consen   61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF  140 (397)
T ss_pred             ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe
Confidence            678899999999975331  000     00   011135777899999987 677889999999999999987654    


Q ss_pred             ---------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccCc
Q psy1285          71 ---------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVP  113 (118)
Q Consensus        71 ---------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  113 (118)
                                           ++|..+-.|++.|+..+..-..+.+|.+.|..+.|+++.+-+.
T Consensus       141 ~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vL  204 (397)
T KOG4283|consen  141 KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVL  204 (397)
T ss_pred             ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEE
Confidence                                 6677889999999999999999999999999999999876543

>KOG4283|consensus

Probab=99.15  E-value=2.8e-10  Score=74.10  Aligned_cols=78  Identities=29%  Similarity=0.491  Sum_probs=65.1

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCC-eEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSR-HLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +..|-+||+.|+..     +...+++.+|.+.|..+.|+|... .|++|+.||.|++||++....               
T Consensus       164 gtr~~~VrLCDi~S-----Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~  238 (397)
T KOG4283|consen  164 GTRDVQVRLCDIAS-----GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI  238 (397)
T ss_pred             ecCCCcEEEEeccC-----CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcc
Confidence            34567999999998     788899999999999999999655 578999999999999986432               


Q ss_pred             -----------------------cceecCCcEEEEeCCCCcc
Q psy1285          71 -----------------------AANSKDQTIKLWDVRKFSN   89 (118)
Q Consensus        71 -----------------------~s~~~d~~i~iwd~~~~~~   89 (118)
                                             ++.+.|..+++|+..+++.
T Consensus       239 ~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  239 LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             ccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence                                   5667788999998877654

>KOG1036|consensus

Probab=99.14  E-value=5.4e-10  Score=72.72  Aligned_cols=76  Identities=17%  Similarity=0.159  Sum_probs=61.8

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc----------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----------------   70 (118)
                      ++=||.+++||+..     ......+. |..++.+.+|.+ ...+++|+.||.|+++|+.....                
T Consensus        31 ssWDgslrlYdv~~-----~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~  103 (323)
T KOG1036|consen   31 SSWDGSLRLYDVPA-----NSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYS  103 (323)
T ss_pred             EeccCcEEEEeccc-----hhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcceeeccCCCceEEEEee
Confidence            34589999999986     34444444 899999999996 45778999999999999987543                


Q ss_pred             ------cceecCCcEEEEeCCCCcc
Q psy1285          71 ------AANSKDQTIKLWDVRKFSN   89 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~   89 (118)
                            ++|++|++|++||.|....
T Consensus       104 ~~~~~vIsgsWD~~ik~wD~R~~~~  128 (323)
T KOG1036|consen  104 YEVGCVISGSWDKTIKFWDPRNKVV  128 (323)
T ss_pred             ccCCeEEEcccCccEEEEecccccc
Confidence                  8899999999999996443

>KOG1445|consensus

Probab=99.13  E-value=1.8e-10  Score=81.42  Aligned_cols=103  Identities=18%  Similarity=0.197  Sum_probs=80.6

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      |-++..|.|-|++++.+....--.+..+. ....|..+.|.| |...|+.++.||.|++|.+...-.             
T Consensus       597 PL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~  675 (1012)
T KOG1445|consen  597 PLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI  675 (1012)
T ss_pred             EecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec
Confidence            35677899999999874321111122222 345789999999 778899999999999999875322             


Q ss_pred             ------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                        +++++|.+|++||+++......+.+|.+.|..++|++.
T Consensus       676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd  731 (1012)
T KOG1445|consen  676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD  731 (1012)
T ss_pred             ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCC
Confidence                              78899999999999999999999999999999999853

>KOG0639|consensus

Probab=99.13  E-value=1e-10  Score=80.59  Aligned_cols=60  Identities=30%  Similarity=0.466  Sum_probs=54.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      .+-+||.|+|||+..     ...++.|++|.+.+.|+.++++|..|-+|+-|++|+.||++....
T Consensus       526 sccsdGnI~vwDLhn-----q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq  585 (705)
T KOG0639|consen  526 SCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ  585 (705)
T ss_pred             eeccCCcEEEEEccc-----ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh
Confidence            455799999999986     678899999999999999999999999999999999999997544

>KOG2394|consensus

Probab=99.13  E-value=7.2e-11  Score=81.67  Aligned_cols=57  Identities=16%  Similarity=0.296  Sum_probs=52.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      +++.||.+||||...     .+++..++.+-+...|++|||||+++++|+.|-.|.||.+..
T Consensus       307 ~VSqDGfLRvF~fdt-----~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e  363 (636)
T KOG2394|consen  307 TVSQDGFLRIFDFDT-----QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE  363 (636)
T ss_pred             EEecCceEEEeeccH-----HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence            899999999999987     677777788889999999999999999999999999998864

>KOG0293|consensus

Probab=99.13  E-value=7.9e-11  Score=79.38  Aligned_cols=61  Identities=23%  Similarity=0.416  Sum_probs=54.3

Q ss_pred             CCcccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCC
Q psy1285           3 TKPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         3 ~~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      |....|.|++|+||+...     +.++..+.||...|+|++|+| +..++|+++.||+|++|....+
T Consensus       454 fiaSGSED~kvyIWhr~s-----gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  454 FIASGSEDSKVYIWHRIS-----GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             eEEecCCCceEEEEEccC-----CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            555788899999999988     899999999999999999999 5678999999999999987643

>KOG0301|consensus

Probab=99.12  E-value=4e-10  Score=79.83  Aligned_cols=77  Identities=16%  Similarity=0.285  Sum_probs=66.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++.||.||.|++.      ++.+.+..+|+..+++++..+++..+++++.|+++++|+.....+               
T Consensus       195 ScsNDg~Ir~w~~~------ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L  268 (745)
T KOG0301|consen  195 SCSNDGSIRLWDLD------GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVL  268 (745)
T ss_pred             eecCCceEEEEecc------CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEe
Confidence            78999999999995      688888999999999999878888999999999999998763211               


Q ss_pred             -----cceecCCcEEEEeCCCCc
Q psy1285          71 -----AANSKDQTIKLWDVRKFS   88 (118)
Q Consensus        71 -----~s~~~d~~i~iwd~~~~~   88 (118)
                           ++|++||.|+||..+..+
T Consensus       269 ~NgDIvvg~SDG~VrVfT~~k~R  291 (745)
T KOG0301|consen  269 LNGDIVVGGSDGRVRVFTVDKDR  291 (745)
T ss_pred             eCCCEEEeccCceEEEEEecccc
Confidence                 889999999999876443

>KOG1408|consensus

Probab=99.10  E-value=4.9e-10  Score=80.18  Aligned_cols=71  Identities=17%  Similarity=0.379  Sum_probs=61.0

Q ss_pred             CcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------------------cceecCCcEEEEeCCC-Ccc
Q psy1285          37 DGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------------------AANSKDQTIKLWDVRK-FSN   89 (118)
Q Consensus        37 ~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------------------~s~~~d~~i~iwd~~~-~~~   89 (118)
                      -.+.+++.+|+|.+||+|..-|.+++|++.+.+.                          ++++.|..|+|||+.. ..+
T Consensus       460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l  539 (1080)
T KOG1408|consen  460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL  539 (1080)
T ss_pred             cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence            4689999999999999999999999999987543                          8899999999999754 456


Q ss_pred             eeeecccCcceeeEeeee
Q psy1285          90 KTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        90 ~~~~~~~~~~v~~~~~~~  107 (118)
                      ...+.+|...|+.+.|--
T Consensus       540 ~qtld~HSssITsvKFa~  557 (1080)
T KOG1408|consen  540 VQTLDGHSSSITSVKFAC  557 (1080)
T ss_pred             hhhhcccccceeEEEEee
Confidence            667889999999888853

>KOG2919|consensus

Probab=99.10  E-value=8.1e-10  Score=72.68  Aligned_cols=85  Identities=24%  Similarity=0.461  Sum_probs=69.3

Q ss_pred             CCceeeecCccCcEEEEEeCCCCCeEEEeeC-CCcEEEEecCCCCc---------------------------cceecCC
Q psy1285          26 AKPVGVLAGHRDGITFIDPKGDSRHLISNSK-DQTIKLWDVRKFNG---------------------------AANSKDQ   77 (118)
Q Consensus        26 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~---------------------------~s~~~d~   77 (118)
                      ..++..+.+|.+.|..++|.++|+.|.+|.. |-.|..||+|....                           ++|+.||
T Consensus       240 ~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG  319 (406)
T KOG2919|consen  240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG  319 (406)
T ss_pred             CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence            6788888899999999999999999999875 67899999986432                           7888999


Q ss_pred             cEEEEeCCCC-cceeeecccCcceeeEeeeeecc
Q psy1285          78 TIKLWDVRKF-SNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        78 ~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                      .|++||++.. ..+..+..+...++.+..++..+
T Consensus       320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mp  353 (406)
T KOG2919|consen  320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMP  353 (406)
T ss_pred             cEEEEecCCCCCcccccccccccccceecCcccc
Confidence            9999999984 43445557777788877776644

>KOG1407|consensus

Probab=99.10  E-value=1e-09  Score=70.29  Aligned_cols=96  Identities=22%  Similarity=0.299  Sum_probs=75.2

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      .+|++|.+|++||++.     .++........+.+ -+.|+|+|.+++.++.|..|...|.++...              
T Consensus        81 atas~dk~ir~wd~r~-----~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~  154 (313)
T KOG1407|consen   81 ATASGDKTIRIWDIRS-----GKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEIS  154 (313)
T ss_pred             EEecCCceEEEEEecc-----CcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeee
Confidence            3899999999999998     78877776544544 478999999999999999999999886433              


Q ss_pred             --------------------------------------------------cceecCCcEEEEeCCCCcceeeecccCcce
Q psy1285          71 --------------------------------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAV  100 (118)
Q Consensus        71 --------------------------------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  100 (118)
                                                                        ++|+.|..+-+||+...-+...+..+.=+|
T Consensus       155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpV  234 (313)
T KOG1407|consen  155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPV  234 (313)
T ss_pred             ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCce
Confidence                                                              788888889999988777766666555555


Q ss_pred             eeEeee
Q psy1285         101 CEQNWE  106 (118)
Q Consensus       101 ~~~~~~  106 (118)
                      ..+-|+
T Consensus       235 RTlSFS  240 (313)
T KOG1407|consen  235 RTLSFS  240 (313)
T ss_pred             EEEEec
Confidence            554443

>KOG0299|consensus

Probab=99.09  E-value=4.6e-10  Score=76.28  Aligned_cols=97  Identities=20%  Similarity=0.369  Sum_probs=76.7

Q ss_pred             ccccCceEEEEeCCCCCCC------------CCCceeee-cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--
Q psy1285           6 QVASLVTCFVWDRRTLNET------------TAKPVGVL-AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~------------~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--   70 (118)
                      +++.|++|.-|++.++...            ...+...- +.|...+.+++.++|+++|++|+.|..|.||+.++...  
T Consensus       159 sask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~  238 (479)
T KOG0299|consen  159 SASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK  238 (479)
T ss_pred             ecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh
Confidence            7889999999998653311            11122222 37888999999999999999999999999999987654  


Q ss_pred             ---------------------cceecCCcEEEEeCCCCcceeeecccCcceee
Q psy1285          71 ---------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCE  102 (118)
Q Consensus        71 ---------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  102 (118)
                                           .+++.|++|++|++.....+..+.+|.+.|..
T Consensus       239 ~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~  291 (479)
T KOG0299|consen  239 VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLG  291 (479)
T ss_pred             cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceee
Confidence                                 78899999999999988888777777765553

>KOG4328|consensus

Probab=99.08  E-value=6.1e-10  Score=75.73  Aligned_cols=98  Identities=24%  Similarity=0.283  Sum_probs=74.3

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      .|+|=+||+... .....-+..+..|..+|.++.|+| +..++.+.++||+|++-|++....                  
T Consensus       209 ~G~VG~Wn~~~~-~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~  287 (498)
T KOG4328|consen  209 GGQVGLWNFGTQ-EKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDF  287 (498)
T ss_pred             CCcEEEEecCCC-CCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccc
Confidence            489999999621 112344556778999999999999 567889999999999999875322                  


Q ss_pred             ---------------------------------------------------cceecCCcEEEEeCCCCcceee----ecc
Q psy1285          71 ---------------------------------------------------AANSKDQTIKLWDVRKFSNKTA----QRN   95 (118)
Q Consensus        71 ---------------------------------------------------~s~~~d~~i~iwd~~~~~~~~~----~~~   95 (118)
                                                                         ++++.|++.+|||+|.......    ...
T Consensus       288 ~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~  367 (498)
T KOG4328|consen  288 SAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLP  367 (498)
T ss_pred             cCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccc
Confidence                                                               8899999999999987765442    236


Q ss_pred             cCcceeeEeeeee
Q psy1285          96 TFRAVCEQNWEYR  108 (118)
Q Consensus        96 ~~~~v~~~~~~~~  108 (118)
                      |...|....|++.
T Consensus       368 HrrsV~sAyFSPs  380 (498)
T KOG4328|consen  368 HRRSVNSAYFSPS  380 (498)
T ss_pred             ccceeeeeEEcCC
Confidence            7777777766654

>KOG1272|consensus

Probab=99.08  E-value=2e-10  Score=78.32  Aligned_cols=73  Identities=23%  Similarity=0.444  Sum_probs=62.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +..+.|+|.+|....     .+|+..+-.|.+.|.++++.++|+++++.+.|+.++|||++++..               
T Consensus       268 ~GhsnGtVSlWSP~s-----kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~  342 (545)
T KOG1272|consen  268 LGHSNGTVSLWSPNS-----KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSL  342 (545)
T ss_pred             EcCCCceEEecCCCC-----cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccc
Confidence            556789999999987     678777788999999999999999999999999999999998654               


Q ss_pred             -----cceecCCcEEEEe
Q psy1285          71 -----AANSKDQTIKLWD   83 (118)
Q Consensus        71 -----~s~~~d~~i~iwd   83 (118)
                           ...+....|.||.
T Consensus       343 SqkglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  343 SQKGLLALSYGDHVQIWK  360 (545)
T ss_pred             ccccceeeecCCeeeeeh
Confidence                 4455666899994

>KOG0270|consensus

Probab=99.05  E-value=4.5e-10  Score=76.05  Aligned_cols=99  Identities=28%  Similarity=0.368  Sum_probs=71.4

Q ss_pred             CceEEEEeCCCCCCCCCCceeee------------------cCccCcEEEEEeCCC-CCeEEEeeCCCcEEEEecCCCCc
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVL------------------AGHRDGITFIDPKGD-SRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~------------------~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      |-.|-|||+...+.  ..|...+                  .+|.+.|..+.|+.. -+.|+|||.|.+|++||+.+..+
T Consensus       201 dp~IeIWDLDI~d~--v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p  278 (463)
T KOG0270|consen  201 DPEIEIWDLDIVDA--VLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP  278 (463)
T ss_pred             CceeEEeccccccc--cccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc
Confidence            56899999975322  2333333                  268888889999875 45788999999999999998665


Q ss_pred             ------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecc
Q psy1285          71 ------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 ------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                                              ++|+.|++|.+.|.|.+..........+.|-.+.|++..+
T Consensus       279 ~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se  342 (463)
T KOG0270|consen  279 KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE  342 (463)
T ss_pred             ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc
Confidence                                    7899999999999996544332223445577777765543

>KOG0641|consensus

Probab=99.04  E-value=3.6e-09  Score=66.96  Aligned_cols=100  Identities=21%  Similarity=0.193  Sum_probs=77.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecC--c-----cCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAG--H-----RDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~--h-----~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------   70 (118)
                      ..+.|.+||.||++.     ...+.++..  |     .+.|..++..|.|++|++|-.|..+.+||++..+.        
T Consensus       199 sgsqdktirfwdlrv-----~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phs  273 (350)
T KOG0641|consen  199 SGSQDKTIRFWDLRV-----NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS  273 (350)
T ss_pred             ccCCCceEEEEeeec-----cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCc
Confidence            667899999999986     344443321  2     25688999999999999999999999999997654        


Q ss_pred             ---------------cceecCCcEEEEeCCCCcc----eeeecccCcceeeEeeeeecc
Q psy1285          71 ---------------AANSKDQTIKLWDVRKFSN----KTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 ---------------~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~  110 (118)
                                     .+++.|.+|++-|+.....    ...+..|+..+-.+.|++.-.
T Consensus       274 adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~  332 (350)
T KOG0641|consen  274 ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF  332 (350)
T ss_pred             cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccc
Confidence                           7899999999999875532    223348888888999986543

>KOG1188|consensus

Probab=99.04  E-value=1.7e-09  Score=71.42  Aligned_cols=99  Identities=19%  Similarity=0.262  Sum_probs=73.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCcc-CcEEEEEeCCCCCeEEEeeC----CCcEEEEecCCCCc----------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHR-DGITFIDPKGDSRHLISNSK----DQTIKLWDVRKFNG----------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~~----------   70 (118)
                      +++.||+||+||+|..   ...+...+.+|+ .+..|++.+-.++.++.|..    +-.+.+||+|+...          
T Consensus        89 s~ssDG~Vr~wD~Rs~---~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~  165 (376)
T KOG1188|consen   89 SCSSDGTVRLWDIRSQ---AESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN  165 (376)
T ss_pred             EeccCCeEEEEEeecc---hhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc
Confidence            7899999999999972   234455566666 45567777656777777653    66799999987543          


Q ss_pred             ----------------cceecCCcEEEEeCCCCccee---eecccCcceeeEeeee
Q psy1285          71 ----------------AANSKDQTIKLWDVRKFSNKT---AQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ----------------~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~  107 (118)
                                      ++||.||.|.+||+.......   ...++...|..+.|.-
T Consensus       166 DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~  221 (376)
T KOG1188|consen  166 DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLS  221 (376)
T ss_pred             CcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeec
Confidence                            899999999999999886544   3346777788887753

>KOG1274|consensus

Probab=99.04  E-value=3.6e-09  Score=77.00  Aligned_cols=97  Identities=15%  Similarity=0.218  Sum_probs=81.1

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc----------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----------------   70 (118)
                      +|.|-.|++-++..     ......+++|.++|.++.|+|++..||+.+.||.|++||+.+...                
T Consensus       114 gsdD~~vK~~~~~D-----~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s  188 (933)
T KOG1274|consen  114 GSDDTAVKLLNLDD-----SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILS  188 (933)
T ss_pred             ecCceeEEEEeccc-----cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccccc
Confidence            56678899988876     566677899999999999999999999999999999999987543                


Q ss_pred             ---------------cceecCCcEEEEeCCCCcceeeec--ccCcceeeEeeeee
Q psy1285          71 ---------------AANSKDQTIKLWDVRKFSNKTAQR--NTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ---------------~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~  108 (118)
                                     +..+.|+.|++|+...+.....+.  .+...++.+.|++.
T Consensus       189 ~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn  243 (933)
T KOG1274|consen  189 RICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN  243 (933)
T ss_pred             ceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence                           566779999999999999877664  33444888888875

>KOG4328|consensus

Probab=99.03  E-value=2.6e-09  Score=72.78  Aligned_cols=106  Identities=15%  Similarity=0.191  Sum_probs=74.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      |+|.|++++|||++..... ..|......|...|.+..|||++..|++.+.|..|+|||......               
T Consensus       340 T~s~D~T~kIWD~R~l~~K-~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~  418 (498)
T KOG4328|consen  340 TASLDQTAKIWDLRQLRGK-ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTG  418 (498)
T ss_pred             ecccCcceeeeehhhhcCC-CCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccc
Confidence            9999999999999974321 113344456999999999999776689999999999999952111               


Q ss_pred             -----------------cceecCCcEEEEeCCCCcceeeec--ccCcceeeEeeeeecccC
Q psy1285          71 -----------------AANSKDQTIKLWDVRKFSNKTAQR--NTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        71 -----------------~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~  112 (118)
                                       +.|..-..|-|+|-..++....+.  ....-...-.|++.+..+
T Consensus       419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~  479 (498)
T KOG4328|consen  419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTL  479 (498)
T ss_pred             ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccce
Confidence                             556666778888888877554433  222222344577766644

>KOG1332|consensus

Probab=99.02  E-value=7.1e-10  Score=70.49  Aligned_cols=102  Identities=13%  Similarity=0.131  Sum_probs=81.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC--CCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD--SRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      .++.||+|.||.-..+   .-........|...|++++|-|.  |-.|++++.||.|.+.+.+....             
T Consensus        75 ScsYDgkVIiWke~~g---~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G  151 (299)
T KOG1332|consen   75 SCSYDGKVIIWKEENG---RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG  151 (299)
T ss_pred             EeecCceEEEEecCCC---chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence            7889999999998763   13445566789999999999884  66788999999999998876411             


Q ss_pred             ---------------------------cceecCCcEEEEeCCCCc--ceeeecccCcceeeEeeeeecc
Q psy1285          71 ---------------------------AANSKDQTIKLWDVRKFS--NKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 ---------------------------~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                                                 ++|+.|..|+||+....+  ....+..|.+=|..++|.+...
T Consensus       152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g  220 (299)
T KOG1332|consen  152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG  220 (299)
T ss_pred             cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccC
Confidence                                       788899999999998763  3335778988899999987763

>KOG2048|consensus

Probab=99.01  E-value=2.4e-09  Score=75.73  Aligned_cols=95  Identities=13%  Similarity=0.115  Sum_probs=73.6

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      .||.+..++...   ...+.-..+.-..+++.+++|+|++..++.|+.||.|++||......                  
T Consensus       130 ddGvl~~~s~~p---~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~i  206 (691)
T KOG2048|consen  130 DDGVLYDFSIGP---DKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTI  206 (691)
T ss_pred             CCceEEEEecCC---ceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceE
Confidence            578667666654   11222233444578999999999999999999999999999986543                  


Q ss_pred             ------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                                  ++|.+.|+|++||...+++.+.+..|...|.+++-+
T Consensus       207 VWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~  254 (691)
T KOG2048|consen  207 VWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA  254 (691)
T ss_pred             EEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEc
Confidence                        778888999999999999998888777766665544

>KOG2110|consensus

Probab=99.00  E-value=4e-09  Score=70.20  Aligned_cols=74  Identities=22%  Similarity=0.351  Sum_probs=63.3

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCc-EEEEecCCCCc------------------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQT-IKLWDVRKFNG------------------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~------------------   70 (118)
                      .|.|.+||...     -.++..+.+|.+.+.+++|+++|.+||+++..|+ |+|+.+.+...                  
T Consensus       152 ~GdV~l~d~~n-----l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F  226 (391)
T KOG2110|consen  152 SGDVVLFDTIN-----LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF  226 (391)
T ss_pred             CceEEEEEccc-----ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence            68999999987     7888899999999999999999999999999998 67999877544                  


Q ss_pred             -------cceecCCcEEEEeCCCCc
Q psy1285          71 -------AANSKDQTIKLWDVRKFS   88 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~   88 (118)
                             ++.+..++|++|.+....
T Consensus       227 s~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  227 SPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             CCCCCeEEEecCCCeEEEEEecccc
Confidence                   445667899999886554

>KOG2445|consensus

Probab=98.98  E-value=3.6e-09  Score=69.18  Aligned_cols=80  Identities=25%  Similarity=0.412  Sum_probs=63.6

Q ss_pred             cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------------------cceecCCcEEEEe
Q psy1285          33 AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------------------AANSKDQTIKLWD   83 (118)
Q Consensus        33 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------------------~s~~~d~~i~iwd   83 (118)
                      .+|.+-|.++.|.+.|+.+++|+.|.+++|||.+....                             ++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            36889999999999999999999999999999765433                             8889999999997


Q ss_pred             CC--CCc-------ceeeecccCcceeeEeeeeecccC
Q psy1285          84 VR--KFS-------NKTAQRNTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        84 ~~--~~~-------~~~~~~~~~~~v~~~~~~~~~~~~  112 (118)
                      -.  +.+       ....+......|+++.|.+++..+
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL  127 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL  127 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcce
Confidence            62  211       122455667789999998877654

>KOG0301|consensus

Probab=98.98  E-value=1.5e-09  Score=76.93  Aligned_cols=89  Identities=27%  Similarity=0.323  Sum_probs=66.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ..+.|+.+.+|.+..     ..|..++.+|++.|.|+....++. +++||.|.++++|.......               
T Consensus        76 ~g~~D~~i~v~~~~~-----~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l  149 (745)
T KOG0301|consen   76 VGGMDTTIIVFKLSQ-----AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASL  149 (745)
T ss_pred             eecccceEEEEecCC-----CCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeec
Confidence            477899999999987     789999999999999999887777 88999999999997654211               


Q ss_pred             -----cceecCCcEEEEeCCCCcceeeecccCcceee
Q psy1285          71 -----AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCE  102 (118)
Q Consensus        71 -----~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  102 (118)
                           ++||.|.+|++|.-  ++.++.+.+|.+.|..
T Consensus       150 ~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRg  184 (745)
T KOG0301|consen  150 PENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRG  184 (745)
T ss_pred             CCCcEEeccCcceeeeccC--Cchhhhhccchhheee
Confidence                 56666667777654  3444445555544443

>KOG0643|consensus

Probab=98.98  E-value=4.2e-09  Score=67.82  Aligned_cols=75  Identities=29%  Similarity=0.382  Sum_probs=63.3

Q ss_pred             ecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------------cceecCCcEEEEeCCCCc
Q psy1285          32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------------AANSKDQTIKLWDVRKFS   88 (118)
Q Consensus        32 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------------~s~~~d~~i~iwd~~~~~   88 (118)
                      +.+|+.++..++|+.+|.+|.+|+.|.++.+|-..+++.                       ++|+.|.++++||+.+++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk   85 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK   85 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence            678999999999999999999999999999998766543                       889999999999999999


Q ss_pred             ceeeecccCcceeeEeeee
Q psy1285          89 NKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        89 ~~~~~~~~~~~v~~~~~~~  107 (118)
                      .+..++ ...+|..+.|+.
T Consensus        86 ~la~~k-~~~~Vk~~~F~~  103 (327)
T KOG0643|consen   86 QLATWK-TNSPVKRVDFSF  103 (327)
T ss_pred             EEEEee-cCCeeEEEeecc
Confidence            887765 344566666653

>KOG0640|consensus

Probab=98.96  E-value=2.4e-09  Score=70.32  Aligned_cols=82  Identities=24%  Similarity=0.279  Sum_probs=65.1

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------------   70 (118)
                      -++|+||+++..+  ..+...-.+|.+.|.++.+++.+++-++++.||.|++||--+.++                    
T Consensus       238 p~~rlYdv~T~Qc--fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk  315 (430)
T KOG0640|consen  238 PTLRLYDVNTYQC--FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK  315 (430)
T ss_pred             CceeEEeccceeE--eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc
Confidence            5789999987321  111112346999999999999999999999999999999766554                    


Q ss_pred             -----cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 -----AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 -----~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                           .+.+.|..+++|.+.+++.++...
T Consensus       316 n~kyiLsSG~DS~vkLWEi~t~R~l~~Yt  344 (430)
T KOG0640|consen  316 NGKYILSSGKDSTVKLWEISTGRMLKEYT  344 (430)
T ss_pred             CCeEEeecCCcceeeeeeecCCceEEEEe
Confidence                 667789999999999999887554

>KOG2111|consensus

Probab=98.96  E-value=1.2e-08  Score=66.97  Aligned_cols=77  Identities=16%  Similarity=0.229  Sum_probs=63.4

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCc-EEEEecCCCCc-------------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQT-IKLWDVRKFNG-------------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~-------------------   70 (118)
                      |+|+|-|+...   ...+...+.+|.+.|.|++.+.+|..+|++|..|+ |++||.++...                   
T Consensus       159 GqvQi~dL~~~---~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS  235 (346)
T KOG2111|consen  159 GQVQIVDLAST---KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS  235 (346)
T ss_pred             ceEEEEEhhhc---CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence            89999999762   12234667899999999999999999999999998 78999987654                   


Q ss_pred             ------cceecCCcEEEEeCCCCcce
Q psy1285          71 ------AANSKDQTIKLWDVRKFSNK   90 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~~   90 (118)
                            +++|..|+++|+.++.....
T Consensus       236 p~~s~LavsSdKgTlHiF~l~~~~~~  261 (346)
T KOG2111|consen  236 PNSSWLAVSSDKGTLHIFSLRDTENT  261 (346)
T ss_pred             CCccEEEEEcCCCeEEEEEeecCCCC
Confidence                  66788899999999875543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.95  E-value=1.7e-08  Score=65.88  Aligned_cols=83  Identities=18%  Similarity=0.087  Sum_probs=62.4

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeE-EEeeCCCcEEEEecCCCCc-------------
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHL-ISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      .+.+.|+.+++||+.+     .+....+..+. .+.+++|+|+++.+ ++++.++.+.+||..+...             
T Consensus         5 ~s~~~d~~v~~~d~~t-----~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   78 (300)
T TIGR03866         5 VSNEKDNTISVIDTAT-----LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELF   78 (300)
T ss_pred             EEecCCCEEEEEECCC-----CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEE
Confidence            3567899999999976     56666666544 46789999999876 5677889999999876432             


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeee
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQ   93 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~   93 (118)
                                ++++.++.|++||+++......+
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~  111 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEI  111 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence                      33456789999999987655444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1538|consensus

Probab=98.95  E-value=8.7e-09  Score=73.61  Aligned_cols=61  Identities=23%  Similarity=0.444  Sum_probs=54.0

Q ss_pred             CCCCc-----ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285           1 MVTKP-----QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus         1 ~~~~~-----~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      ++|+|     -.+++..+.+||.+.     +..+.++++|.+-|+|++|+.+|..+++|+.|+.|.+|...
T Consensus        18 ~afkPDGsqL~lAAg~rlliyD~nd-----G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k   83 (1081)
T KOG1538|consen   18 IAFKPDGTQLILAAGSRLLVYDTSD-----GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK   83 (1081)
T ss_pred             eEECCCCceEEEecCCEEEEEeCCC-----cccccccccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence            35666     346688999999998     78888999999999999999999999999999999999865

>KOG1273|consensus

Probab=98.94  E-value=5.2e-09  Score=68.79  Aligned_cols=80  Identities=23%  Similarity=0.253  Sum_probs=65.5

Q ss_pred             eeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------------cceecCCcEEEEeCC
Q psy1285          29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------------AANSKDQTIKLWDVR   85 (118)
Q Consensus        29 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------------~s~~~d~~i~iwd~~   85 (118)
                      ..++. +.. ..|+.|++-|.+||+|+.||.|-+||+.++..                       .++|.|..|.+||+.
T Consensus        18 ~~tld-~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~   95 (405)
T KOG1273|consen   18 THTLD-NPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL   95 (405)
T ss_pred             ceecc-CCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence            34444 333 78999999999999999999999999987653                       788999999999999


Q ss_pred             CCcceeeecccCcceeeEeeeeeccc
Q psy1285          86 KFSNKTAQRNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        86 ~~~~~~~~~~~~~~v~~~~~~~~~~~  111 (118)
                      .+.+.+.+. -..+|..+.|+++..+
T Consensus        96 ~gs~l~rir-f~spv~~~q~hp~k~n  120 (405)
T KOG1273|consen   96 KGSPLKRIR-FDSPVWGAQWHPRKRN  120 (405)
T ss_pred             CCCceeEEE-ccCccceeeeccccCC
Confidence            999887775 4567888888877654

>KOG1063|consensus

Probab=98.94  E-value=8.2e-09  Score=73.43  Aligned_cols=95  Identities=23%  Similarity=0.296  Sum_probs=74.1

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------------   70 (118)
                      ..|++|+...     -.....+.+|.=.|..++||||+++|++.+.|+++.+|.......                    
T Consensus       552 AvI~lw~t~~-----W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW  626 (764)
T KOG1063|consen  552 AVIRLWNTAN-----WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSW  626 (764)
T ss_pred             eEEEEEeccc-----hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEccc
Confidence            4689999875     455567889999999999999999999999999999998864322                    


Q ss_pred             -------cceecCCcEEEEeCCCC--cceee--ecccCcceeeEeeeeecc
Q psy1285          71 -------AANSKDQTIKLWDVRKF--SNKTA--QRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~--~~~~~--~~~~~~~v~~~~~~~~~~  110 (118)
                             +++|.|.+|++|.....  ..+..  ...+...|+.+.|.+...
T Consensus       627 ~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~  677 (764)
T KOG1063|consen  627 SPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH  677 (764)
T ss_pred             CcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc
Confidence                   89999999999988776  33333  225666777777765443

>KOG0288|consensus

Probab=98.91  E-value=3.5e-10  Score=76.09  Aligned_cols=85  Identities=31%  Similarity=0.481  Sum_probs=72.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      |.+.|..|++|++...   ......++.+..+.|..++|.+++.++++++.|+.+++|++.+.+.               
T Consensus       192 tgg~Dr~Ik~W~v~~~---k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak  268 (459)
T KOG0288|consen  192 TGGSDRIIKLWNVLGE---KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAK  268 (459)
T ss_pred             hcchhhhhhhhhcccc---hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeeh
Confidence            7889999999999862   2456778888899999999999999999999999999999986543               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQ   93 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~   93 (118)
                              ++|+.|.+|+.||+....+.+.+
T Consensus       269 ~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~  299 (459)
T KOG0288|consen  269 FKLSHSRVVSGSADRTIKLWDLQKAYCSKTV  299 (459)
T ss_pred             hhccccceeeccccchhhhhhhhhhheeccc
Confidence                    78899999999999887766543

>KOG2096|consensus

Probab=98.90  E-value=6.7e-09  Score=68.42  Aligned_cols=77  Identities=14%  Similarity=0.235  Sum_probs=63.1

Q ss_pred             CCcccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           3 TKPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         3 ~~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      +.++++.|.+|.||+++      ++.+..+...+..-+..+.||+|+.+++++-.-.|++|.+--...            
T Consensus       201 ~imsas~dt~i~lw~lk------Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L  274 (420)
T KOG2096|consen  201 YIMSASLDTKICLWDLK------GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL  274 (420)
T ss_pred             EEEEecCCCcEEEEecC------CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence            45689999999999998      567777766666667788999999999999999999998632110            


Q ss_pred             -------------------cceecCCcEEEEeCC
Q psy1285          71 -------------------AANSKDQTIKLWDVR   85 (118)
Q Consensus        71 -------------------~s~~~d~~i~iwd~~   85 (118)
                                         ++.|.||++++||+.
T Consensus       275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             ccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence                               788999999999874

>KOG1446|consensus

Probab=98.88  E-value=3.1e-08  Score=64.76  Aligned_cols=84  Identities=20%  Similarity=0.281  Sum_probs=66.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeC--CCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSK--DQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~-------------   70 (118)
                      +.+.|.+++|||...     +..+.++..+...+..++|....+.++.++.  |.+|++.++.+...             
T Consensus        31 tss~dDsl~LYd~~~-----g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~s  105 (311)
T KOG1446|consen   31 TSSEDDSLRLYDSLS-----GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNS  105 (311)
T ss_pred             EecCCCeEEEEEcCC-----CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEE
Confidence            567888999999987     7888888888888999999765555554444  88899888876443             


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                                ++++.|++|++||+|..++...+.
T Consensus       106 L~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~  139 (311)
T KOG1446|consen  106 LSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN  139 (311)
T ss_pred             EEecCCCCeEEecccCCeEEeeEecCCCCceEEe
Confidence                      889999999999999887765443

>KOG0642|consensus

Probab=98.88  E-value=1.1e-08  Score=71.29  Aligned_cols=107  Identities=17%  Similarity=0.221  Sum_probs=84.9

Q ss_pred             ccccCceEEEEeCCCCCC-----CCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc----------
Q psy1285           6 QVASLVTCFVWDRRTLNE-----TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----------   70 (118)
                      +++.||+|+.|.+.....     ........+.||.+.++.+.+++....|++++.||++++|+......          
T Consensus       361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g  440 (577)
T KOG0642|consen  361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHG  440 (577)
T ss_pred             eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccC
Confidence            788999999997762110     01234456889999999999999888899999999999998764221          


Q ss_pred             ----------------------------------------------------------------cceecCCcEEEEeCCC
Q psy1285          71 ----------------------------------------------------------------AANSKDQTIKLWDVRK   86 (118)
Q Consensus        71 ----------------------------------------------------------------~s~~~d~~i~iwd~~~   86 (118)
                                                                                      .++-.|+.|+++|..+
T Consensus       441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~  520 (577)
T KOG0642|consen  441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT  520 (577)
T ss_pred             CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence                                                                            4566789999999999


Q ss_pred             CcceeeecccCcceeeEeeeeecccC
Q psy1285          87 FSNKTAQRNTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        87 ~~~~~~~~~~~~~v~~~~~~~~~~~~  112 (118)
                      +..+.....|...++++..+++-+-+
T Consensus       521 ~~~l~s~~a~~~svtslai~~ng~~l  546 (577)
T KOG0642|consen  521 GKILHSMVAHKDSVTSLAIDPNGPYL  546 (577)
T ss_pred             cccchheeeccceecceeecCCCceE
Confidence            99998888899899998887765543

>KOG2695|consensus

Probab=98.86  E-value=1.2e-08  Score=67.81  Aligned_cols=100  Identities=17%  Similarity=0.120  Sum_probs=77.4

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc-----------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~-----------------   70 (118)
                      .+|.|...|++..+...+.+.+.+. |.+.|.++..-. ++.+|++.+.+|+|++||.|-..+                 
T Consensus       272 RngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l  350 (425)
T KOG2695|consen  272 RNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL  350 (425)
T ss_pred             cCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence            4689999999987666778888777 899999988755 688999999999999999985433                 


Q ss_pred             -----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeec
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  109 (118)
                                 +++++|...|||.++.+.....++..........|++.+
T Consensus       351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~  400 (425)
T KOG2695|consen  351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAF  400 (425)
T ss_pred             ccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceeh
Confidence                       678899999999999998887665443333334444443

>KOG0321|consensus

Probab=98.84  E-value=3.5e-08  Score=69.84  Aligned_cols=103  Identities=20%  Similarity=0.275  Sum_probs=73.0

Q ss_pred             cccc-CceEEEEeCCCCCCCC-CCcee--eecCc---cCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------
Q psy1285           6 QVAS-LVTCFVWDRRTLNETT-AKPVG--VLAGH---RDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------   70 (118)
Q Consensus         6 ~~~~-dg~v~iwd~~~~~~~~-~~~~~--~~~~h---~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------   70 (118)
                      +++. |+.|++||++...... .++..  .+.-|   ...+.++.....|.+|.+.+.|+.|.+||+++...        
T Consensus       234 Saga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg  313 (720)
T KOG0321|consen  234 SAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSG  313 (720)
T ss_pred             eccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccC
Confidence            5555 9999999998632211 12221  12223   22455666666678777666799999999987543        


Q ss_pred             -------------------cceecCCcEEEEeCCCCcceeee-cccCcceeeEeeeee
Q psy1285          71 -------------------AANSKDQTIKLWDVRKFSNKTAQ-RNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------------------~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~  108 (118)
                                         ++|+.|....+|.+........+ .+|...|+.+.|.+.
T Consensus       314 ~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  314 KLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             cccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence                               78999999999999998876554 489999999999654

>KOG0322|consensus

Probab=98.82  E-value=1.2e-08  Score=65.58  Aligned_cols=100  Identities=16%  Similarity=0.234  Sum_probs=78.5

Q ss_pred             cCceEEEEeCCCCCC-----CCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           9 SLVTCFVWDRRTLNE-----TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      .+|.+-+||+.....     ...+.......|..+|.++.|.+....=++|+.+..+..|.+.....             
T Consensus       173 Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp  252 (323)
T KOG0322|consen  173 ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP  252 (323)
T ss_pred             cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCC
Confidence            479999999987310     01133334567999999999987555557888888888888764321             


Q ss_pred             --------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                    +++++|+.||||+.|+..++..+..|...|+.+.|++.
T Consensus       253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd  304 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD  304 (323)
T ss_pred             CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence                          88999999999999999999999999999999999876

>KOG1310|consensus

Probab=98.80  E-value=3.1e-08  Score=69.36  Aligned_cols=78  Identities=26%  Similarity=0.359  Sum_probs=65.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeec-CccCcEEEEEeCC--CCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLA-GHRDGITFIDPKG--DSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      ..|.|-.+.|||.-.     .++++.+. +|...|++++|-|  +.+.+++|..|..|+++|+.+...            
T Consensus        67 SGSDD~r~ivWd~~~-----~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~  141 (758)
T KOG1310|consen   67 SGSDDTRLIVWDPFE-----YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTR  141 (758)
T ss_pred             ecCCcceEEeecchh-----cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhh
Confidence            567788999999976     67777765 8999999999988  567889999999999999985322            


Q ss_pred             ----------------------cceecCCcEEEEeCCCCc
Q psy1285          71 ----------------------AANSKDQTIKLWDVRKFS   88 (118)
Q Consensus        71 ----------------------~s~~~d~~i~iwd~~~~~   88 (118)
                                            -+++.||+|+-||+|.+.
T Consensus       142 ~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  142 CWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             hhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence                                  567889999999999754

>KOG0644|consensus

Probab=98.77  E-value=1.1e-08  Score=74.41  Aligned_cols=81  Identities=25%  Similarity=0.383  Sum_probs=71.5

Q ss_pred             eeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------------cceecCCcEEEEeCCC
Q psy1285          30 GVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------------AANSKDQTIKLWDVRK   86 (118)
Q Consensus        30 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------------~s~~~d~~i~iwd~~~   86 (118)
                      ..+.+|...|+|+.|...|+++++|+.|..++||...+..+                       +++|.|..|++|.+..
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            34678999999999999999999999999999999776443                       7889999999999999


Q ss_pred             CcceeeecccCcceeeEeeeeecc
Q psy1285          87 FSNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        87 ~~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                      +.++.-+.+|.+.|+.++|+++..
T Consensus       264 ~~pvsvLrghtgavtaiafsP~~s  287 (1113)
T KOG0644|consen  264 GAPVSVLRGHTGAVTAIAFSPRAS  287 (1113)
T ss_pred             CchHHHHhccccceeeeccCcccc
Confidence            999888889999999998888773

>KOG0307|consensus

Probab=98.74  E-value=7.7e-08  Score=71.53  Aligned_cols=102  Identities=22%  Similarity=0.307  Sum_probs=79.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccC--cEEEEEeCCCC-CeEEEeeCC---CcEEEEecCCCCc---------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRD--GITFIDPKGDS-RHLISNSKD---QTIKLWDVRKFNG---------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~-~~l~s~~~d---~~i~~wd~~~~~~---------   70 (118)
                      .++.+|++-|||++.     .+++..+..+.+  .+..+.|+|+. ..+++++.|   -.|.+||+|....         
T Consensus       179 S~s~sg~~~iWDlr~-----~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~  253 (1049)
T KOG0307|consen  179 SGSPSGRAVIWDLRK-----KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ  253 (1049)
T ss_pred             ccCCCCCceeccccC-----CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccc
Confidence            567789999999997     566655554544  47799999964 455666554   3699999875332         


Q ss_pred             ----------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccC
Q psy1285          71 ----------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        71 ----------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  112 (118)
                                      ++++.|+.|.+|+..+++.+..+....+=+..+.|+++.+..
T Consensus       254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~  311 (1049)
T KOG0307|consen  254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSV  311 (1049)
T ss_pred             cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcch
Confidence                            778899999999999999998888777778899999888754

>KOG1524|consensus

Probab=98.73  E-value=1.8e-08  Score=70.28  Aligned_cols=95  Identities=16%  Similarity=0.241  Sum_probs=73.4

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC-Cc---------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF-NG---------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~---------------   70 (118)
                      +++||.+.|-+-.      +.......+|.+.+.+-+|+|+|.-|++.+.||.|++|.-... +.               
T Consensus        81 ~s~DGkf~il~k~------~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~  154 (737)
T KOG1524|consen   81 CSNDGRFVILNKS------ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWA  154 (737)
T ss_pred             EcCCceEEEeccc------chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEEC
Confidence            5678888776554      3445567889999999999999999999999999999975421 00               


Q ss_pred             -----------------------------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeE
Q psy1285          71 -----------------------------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQ  103 (118)
Q Consensus        71 -----------------------------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  103 (118)
                                                                     ++|+.|...++||-..... .....|.-+++++
T Consensus       155 p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L-f~S~~~ey~ITSv  233 (737)
T KOG1524|consen  155 PNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL-FTSAAEEYAITSV  233 (737)
T ss_pred             CCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccc-ccCChhccceeee
Confidence                                                           7889999999999874443 3344577788999


Q ss_pred             eeeee
Q psy1285         104 NWEYR  108 (118)
Q Consensus       104 ~~~~~  108 (118)
                      .|++.
T Consensus       234 a~npd  238 (737)
T KOG1524|consen  234 AFNPE  238 (737)
T ss_pred             eeccc
Confidence            88875

>KOG0290|consensus

Probab=98.71  E-value=7.4e-08  Score=62.87  Aligned_cols=107  Identities=18%  Similarity=0.252  Sum_probs=74.4

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeee-----cCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc----------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVL-----AGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG----------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~----------   70 (118)
                      |..+..+|+|.+...+. ..++...+     ..+..++.++.|+. +.+++.+.+-|-++.+||+.....          
T Consensus       117 ATs~D~LRlWri~~ee~-~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH  195 (364)
T KOG0290|consen  117 ATSSDFLRLWRIGDEES-RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH  195 (364)
T ss_pred             hcccCeEEEEeccCcCC-ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence            56678999999974111 11111111     23567899999986 778899999999999999987521          


Q ss_pred             -----------------cceecCCcEEEEeCCCCcceeee-c--ccCcceeeEeeeeecccCcc
Q psy1285          71 -----------------AANSKDQTIKLWDVRKFSNKTAQ-R--NTFRAVCEQNWEYRRENVPR  114 (118)
Q Consensus        71 -----------------~s~~~d~~i~iwd~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~~~~  114 (118)
                                       ++.+.||.+||||+|....-..+ +  ....+...+.|+..-+++.+
T Consensus       196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymA  259 (364)
T KOG0290|consen  196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMA  259 (364)
T ss_pred             CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHh
Confidence                             77889999999999987654322 2  33556778888765555444

>KOG2055|consensus

Probab=98.71  E-value=6.5e-08  Score=66.26  Aligned_cols=97  Identities=11%  Similarity=0.169  Sum_probs=78.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++..|.|.+....+     .+.+.+++ -.+.|..++|+.+++.|.+++.+|.|-+||++...+               
T Consensus       320 ~~G~~G~I~lLhakT-----~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~  393 (514)
T KOG2055|consen  320 IAGNNGHIHLLHAKT-----KELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSL  393 (514)
T ss_pred             EcccCceEEeehhhh-----hhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeee
Confidence            677888998888877     67777776 678899999999999999999999999999997654               


Q ss_pred             ---------cceecCCcEEEEeCC------CCcceeeecccCcceeeEeeeee
Q psy1285          71 ---------AANSKDQTIKLWDVR------KFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~------~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                               ++|+..|.|.|||..      +++++..+.+....|+.+.|+..
T Consensus       394 ~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d  446 (514)
T KOG2055|consen  394 CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD  446 (514)
T ss_pred             eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence                     889999999999953      44555566666677777777643

>KOG1539|consensus

Probab=98.70  E-value=1.8e-07  Score=68.04  Aligned_cols=95  Identities=17%  Similarity=0.214  Sum_probs=80.9

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc----------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----------------   70 (118)
                      .+.+|.++||++++     .+.+.+++++...|.++.-+|--..++.|..+|+|.+++++....                
T Consensus       178 Gs~~G~lql~Nvrt-----~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSF  252 (910)
T KOG1539|consen  178 GSSQGRLQLWNVRT-----GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSF  252 (910)
T ss_pred             eecCCcEEEEEecc-----CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEe
Confidence            47789999999998     899999999999999999999888999999999999999986432                


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeec-ccCcceeeEeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQR-NTFRAVCEQNWE  106 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~  106 (118)
                              ++|+..|.+-+||+...+.+.... .|.+.+....+-
T Consensus       253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl  297 (910)
T KOG1539|consen  253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFL  297 (910)
T ss_pred             ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceec
Confidence                    777778999999999888877665 776666665553

>KOG0322|consensus

Probab=98.69  E-value=2e-08  Score=64.65  Aligned_cols=55  Identities=27%  Similarity=0.390  Sum_probs=51.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEec
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV   65 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~   65 (118)
                      ||+=|+.+|+|.-++     ..++..++-|.+.|++++|+|+...+|+++.|.+|.+|++
T Consensus       268 TAGWD~RiRVyswrt-----l~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  268 TAGWDHRIRVYSWRT-----LNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ecccCCcEEEEEecc-----CCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            788899999999998     7888888889999999999999899999999999999986

>KOG1240|consensus

Probab=98.68  E-value=3.4e-07  Score=69.07  Aligned_cols=65  Identities=12%  Similarity=0.175  Sum_probs=49.6

Q ss_pred             CCcccccCceEEEEeCCCCCCCCC--CceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285           3 TKPQVASLVTCFVWDRRTLNETTA--KPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus         3 ~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      |..++|.||+||+|+.+...-+.+  ....++.--.+++.++...+.+..+|.++.||.|.+.++..
T Consensus      1063 ~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1063 LFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred             eEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccc
Confidence            345899999999999987432212  22333333467899999999999999999999999999875

>KOG3914|consensus

Probab=98.68  E-value=1e-07  Score=64.07  Aligned_cols=63  Identities=19%  Similarity=0.283  Sum_probs=53.5

Q ss_pred             ecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------------cceecCCcEEEEeCCCCc
Q psy1285          32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------------AANSKDQTIKLWDVRKFS   88 (118)
Q Consensus        32 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------------~s~~~d~~i~iwd~~~~~   88 (118)
                      +-+|-+-+..++++||+++++++..|..|++-.......                       ++|+.|++|++||+++++
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence            457999999999999999999999999999876654221                       789999999999999999


Q ss_pred             ceeeec
Q psy1285          89 NKTAQR   94 (118)
Q Consensus        89 ~~~~~~   94 (118)
                      .+..+.
T Consensus       227 ~L~t~d  232 (390)
T KOG3914|consen  227 LLDTCD  232 (390)
T ss_pred             cccccc
Confidence            886543

>KOG2048|consensus

Probab=98.66  E-value=5.8e-07  Score=64.06  Aligned_cols=100  Identities=16%  Similarity=0.108  Sum_probs=77.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++.+|.|.-||+-.     .++...+..-.+.|.+++.+|.+..++.|+.||.+..++.....-               
T Consensus        85 S~g~sg~i~EwDl~~-----lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs  159 (691)
T KOG2048|consen   85 SSGLSGSITEWDLHT-----LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS  159 (691)
T ss_pred             eecCCceEEEEeccc-----CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence            567889999999987     778777888889999999999999999999999666666543211               


Q ss_pred             ----------cceecCCcEEEEeCCCCcceee----ecccCcceeeEeeeeecc
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTA----QRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~  110 (118)
                                ++|+.||.|++||...+.....    +......=..++|++.+.
T Consensus       160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L  213 (691)
T KOG2048|consen  160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL  213 (691)
T ss_pred             EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe
Confidence                      7889999999999999988762    222222245688887664

>KOG0644|consensus

Probab=98.64  E-value=1.7e-08  Score=73.45  Aligned_cols=75  Identities=24%  Similarity=0.425  Sum_probs=67.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      |.+.|..++||.+.+     ......+.||.+.+..++.+.+...+++++.|..|++|.++....               
T Consensus       207 tgsdd~lvKiwS~et-----~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaia  281 (1113)
T KOG0644|consen  207 TGSDDRLVKIWSMET-----ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIA  281 (1113)
T ss_pred             ecCccceeeeeeccc-----hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeec
Confidence            778899999999876     788888999999999999999888999999999999999987544               


Q ss_pred             ----cceecCCcEEEEeCC
Q psy1285          71 ----AANSKDQTIKLWDVR   85 (118)
Q Consensus        71 ----~s~~~d~~i~iwd~~   85 (118)
                          .+.+.||++++||.|
T Consensus       282 fsP~~sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  282 FSPRASSSDDGTCRIWDAR  300 (1113)
T ss_pred             cCccccCCCCCceEecccc
Confidence                455789999999999

>KOG1310|consensus

Probab=98.64  E-value=4.3e-08  Score=68.67  Aligned_cols=59  Identities=25%  Similarity=0.431  Sum_probs=51.9

Q ss_pred             ceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------------------cceecCCcEEE
Q psy1285          28 PVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------------------AANSKDQTIKL   81 (118)
Q Consensus        28 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------------------~s~~~d~~i~i   81 (118)
                      ....+.+|++.|+|+.|+.+|..|++|+.|-.+.|||......                          ++|+.|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            3456789999999999999999999999999999999875332                          78899999999


Q ss_pred             EeCCC
Q psy1285          82 WDVRK   86 (118)
Q Consensus        82 wd~~~   86 (118)
                      +|+..
T Consensus       122 fdl~~  126 (758)
T KOG1310|consen  122 FDLDS  126 (758)
T ss_pred             Eeccc
Confidence            99985

>KOG4227|consensus

Probab=98.64  E-value=2.7e-07  Score=62.63  Aligned_cols=83  Identities=22%  Similarity=0.285  Sum_probs=66.5

Q ss_pred             ccccCceEEEEeCCCCCC-CCCCceeeec-CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNE-TTAKPVGVLA-GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~-~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      ..+.|..+++|++...-. .+.+|+.... .|.+.|+|+.|....+.+.+|..+++|.+.|+.+...             
T Consensus        73 SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~V  152 (609)
T KOG4227|consen   73 SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDV  152 (609)
T ss_pred             ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccce
Confidence            567789999999975222 2356766555 3558999999999889999999999999999986433             


Q ss_pred             ------------cceecCCcEEEEeCCCCc
Q psy1285          71 ------------AANSKDQTIKLWDVRKFS   88 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~   88 (118)
                                  ++.+.++.|.+||+|...
T Consensus       153 Y~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  153 YHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             eecccCCCCceEEEEecCceEEEEeccCCC
Confidence                        677889999999999766

>KOG0280|consensus

Probab=98.64  E-value=3e-07  Score=60.06  Aligned_cols=81  Identities=16%  Similarity=0.175  Sum_probs=60.8

Q ss_pred             CceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc--------------------------cceecCCcE
Q psy1285          27 KPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG--------------------------AANSKDQTI   79 (118)
Q Consensus        27 ~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~--------------------------~s~~~d~~i   79 (118)
                      +.++.+++|.-++....|+. +.+.+.+|+.|+.+..||+|.+..                          ++|++|-.|
T Consensus       156 e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i  235 (339)
T KOG0280|consen  156 EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECI  235 (339)
T ss_pred             eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccce
Confidence            44557889999999999985 567888999999999999993322                          899999999


Q ss_pred             EEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          80 KLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                      ++||.|+...+..-..-.+.|-.+.|++
T Consensus       236 ~~~DtRnm~kPl~~~~v~GGVWRi~~~p  263 (339)
T KOG0280|consen  236 RVLDTRNMGKPLFKAKVGGGVWRIKHHP  263 (339)
T ss_pred             eeeehhcccCccccCccccceEEEEecc
Confidence            9999997766543333334455555544

>KOG2394|consensus

Probab=98.63  E-value=1.2e-07  Score=66.16  Aligned_cols=81  Identities=14%  Similarity=0.160  Sum_probs=67.5

Q ss_pred             ceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------------cceecCCcEEEEeC
Q psy1285          28 PVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------------AANSKDQTIKLWDV   84 (118)
Q Consensus        28 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------------~s~~~d~~i~iwd~   84 (118)
                      |+..+.--.+.|+.++|+|||++||+.+.||.++|||+.+...                       ++|+.|.-|.||.+
T Consensus       282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf  361 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF  361 (636)
T ss_pred             ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence            3333433356899999999999999999999999999986433                       88999999999999


Q ss_pred             CCCcceeeecccCcceeeEeeeee
Q psy1285          85 RKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        85 ~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                      ...+.+..-.+|+.=|+.++||++
T Consensus       362 ~erRVVARGqGHkSWVs~VaFDpy  385 (636)
T KOG2394|consen  362 EERRVVARGQGHKSWVSVVAFDPY  385 (636)
T ss_pred             ccceEEEeccccccceeeEeeccc
Confidence            988877777799999999999963

>KOG1587|consensus

Probab=98.60  E-value=4.9e-07  Score=64.47  Aligned_cols=106  Identities=19%  Similarity=0.241  Sum_probs=76.7

Q ss_pred             cccCceEEEEeCCCCCCCCCCce-eeecCccCcEEEEEeCCCC--CeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPV-GVLAGHRDGITFIDPKGDS--RHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      ...+|+|-+||++.........+ .....|...+..+.|..+.  .-+++++.||.|+.|+++....             
T Consensus       261 G~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~  340 (555)
T KOG1587|consen  261 GCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHK  340 (555)
T ss_pred             eccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccc
Confidence            44589999999987432112222 2234688999999996544  4489999999999999875332             


Q ss_pred             -------------------------------------------------------------------------cceecCC
Q psy1285          71 -------------------------------------------------------------------------AANSKDQ   77 (118)
Q Consensus        71 -------------------------------------------------------------------------~s~~~d~   77 (118)
                                                                                               ...+.|.
T Consensus       341 ~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW  420 (555)
T KOG1587|consen  341 GQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW  420 (555)
T ss_pred             ccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc
Confidence                                                                                     2233499


Q ss_pred             cEEEEeCC-CCcceeeecccCcceeeEeeeeecccC
Q psy1285          78 TIKLWDVR-KFSNKTAQRNTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        78 ~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~  112 (118)
                      +++||.-. ...++..+..+...++.++|++.++.+
T Consensus       421 ~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpav  456 (555)
T KOG1587|consen  421 TVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAV  456 (555)
T ss_pred             eeEeccccCCCCcchhhhhccceeeeeEEcCcCceE
Confidence            99999988 556666666777789999999988764

>KOG1517|consensus

Probab=98.58  E-value=4.7e-07  Score=67.66  Aligned_cols=101  Identities=24%  Similarity=0.236  Sum_probs=73.9

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCc--EEEEEeCCCCC-eEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDG--ITFIDPKGDSR-HLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +||.||+||.+...+  ..++...+.|...  |..+.+.++|- .|++|+.||.|.+||+|....               
T Consensus      1229 aDGsvRvyD~R~a~~--ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1229 ADGSVRVYDRRMAPP--DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSA 1306 (1387)
T ss_pred             cCCceEEeecccCCc--cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcc
Confidence            589999999997533  3566778889887  99999988653 599999999999999998321               


Q ss_pred             -------------cceecCCcEEEEeCCCCccee-----eec-ccCcceeeEeeeeecccC
Q psy1285          71 -------------AANSKDQTIKLWDVRKFSNKT-----AQR-NTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        71 -------------~s~~~d~~i~iwd~~~~~~~~-----~~~-~~~~~v~~~~~~~~~~~~  112 (118)
                                   ++|+. +.|+||++.......     .+. .....+.++.|++.+.-+
T Consensus      1307 lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLL 1366 (1387)
T ss_pred             ceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhh
Confidence                         56665 899999997654432     122 333466777887766543

>KOG1063|consensus

Probab=98.58  E-value=3e-07  Score=65.74  Aligned_cols=103  Identities=16%  Similarity=0.274  Sum_probs=75.0

Q ss_pred             ccccCceEEEEeCCCCCCCC----------------CCceee----------ecCccCcEEEEEeCCCCCeEEEeeCCCc
Q psy1285           6 QVASLVTCFVWDRRTLNETT----------------AKPVGV----------LAGHRDGITFIDPKGDSRHLISNSKDQT   59 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~----------------~~~~~~----------~~~h~~~v~~~~~~~~~~~l~s~~~d~~   59 (118)
                      +.|.|..||||.+.......                ......          +.+|.+.|+++.|+|++..|++++.|++
T Consensus       211 S~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDks  290 (764)
T KOG1063|consen  211 SSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKS  290 (764)
T ss_pred             ecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcc
Confidence            67889999999986533100                011111          2389999999999999999999999999


Q ss_pred             EEEEecCCCCc------------------------------cceecCCcEEEEeCCCC---cceeeecccCcceeeEeee
Q psy1285          60 IKLWDVRKFNG------------------------------AANSKDQTIKLWDVRKF---SNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        60 i~~wd~~~~~~------------------------------~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~  106 (118)
                      +.+|.......                              ++-+..|..++|-....   .+.....+|.+.|.+++|+
T Consensus       291 miiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~  370 (764)
T KOG1063|consen  291 MIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD  370 (764)
T ss_pred             eEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec
Confidence            99998876533                              44466788999983332   2233445999999999998


Q ss_pred             ee
Q psy1285         107 YR  108 (118)
Q Consensus       107 ~~  108 (118)
                      +.
T Consensus       371 ps  372 (764)
T KOG1063|consen  371 PS  372 (764)
T ss_pred             CC
Confidence            53

>KOG1587|consensus

Probab=98.56  E-value=8.3e-07  Score=63.32  Aligned_cols=76  Identities=25%  Similarity=0.342  Sum_probs=61.3

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc-------------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG-------------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~-------------------   70 (118)
                      +.+.+|+++.+    ..+...+. ....|.|++|+| +..+++.|.++|.|.+||++....                   
T Consensus       222 ~~~~vW~~~~p----~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~  296 (555)
T KOG1587|consen  222 GVLLVWSLKNP----NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA  296 (555)
T ss_pred             ceEEEEecCCC----CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence            47899999863    45555555 578899999999 677888899999999999986432                   


Q ss_pred             ------------cceecCCcEEEEeCCCCccee
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSNKT   91 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~~~   91 (118)
                                  ++++.||.|..|+++....+.
T Consensus       297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~  329 (555)
T KOG1587|consen  297 VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV  329 (555)
T ss_pred             EEEeccCCCCceEEEecCCcEeeeeccccccch
Confidence                        678889999999998877643

>KOG2106|consensus

Probab=98.56  E-value=6.2e-07  Score=62.37  Aligned_cols=54  Identities=26%  Similarity=0.359  Sum_probs=44.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEec
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV   65 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~   65 (118)
                      |+-++|.+.||+...     ........+|.+.|++++.-.+|.+| +|+.|+.|..||-
T Consensus       262 TgDS~G~i~Iw~~~~-----~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~  315 (626)
T KOG2106|consen  262 TGDSGGNILIWSKGT-----NRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDD  315 (626)
T ss_pred             eecCCceEEEEeCCC-----ceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccc
Confidence            677889999999975     44445555899999999999888765 5999999999993

>KOG1408|consensus

Probab=98.53  E-value=7.6e-07  Score=64.43  Aligned_cols=75  Identities=19%  Similarity=0.210  Sum_probs=64.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecC---ccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAG---HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      ++..|..||||++..     ++..+.|++   |.+..-.+...|.|.++++.+.|+++.++|+.++++            
T Consensus       613 t~cQDrnirif~i~s-----gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VT  687 (1080)
T KOG1408|consen  613 TVCQDRNIRIFDIES-----GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVT  687 (1080)
T ss_pred             EEecccceEEEeccc-----cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchhee
Confidence            788999999999987     666666654   566677788899999999999999999999998766            


Q ss_pred             -----------cceecCCcEEEEeCC
Q psy1285          71 -----------AANSKDQTIKLWDVR   85 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~   85 (118)
                                 ++.+.||.|.||.+-
T Consensus       688 G~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  688 GVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             eeeecccchhheeecCCceEEEEECc
Confidence                       788999999999874

>KOG1272|consensus

Probab=98.53  E-value=1.5e-07  Score=64.68  Aligned_cols=84  Identities=18%  Similarity=0.239  Sum_probs=71.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++..|.++.-|+..     ++.+..+..-.+.+..++.+|-...+..|..+|+|.+|...+...               
T Consensus       226 ~~~~~G~L~Y~DVS~-----GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siA  300 (545)
T KOG1272|consen  226 AASEAGFLKYQDVST-----GKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIA  300 (545)
T ss_pred             ecccCCceEEEeech-----hhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEE
Confidence            677789999999987     788877777778888999999888999999999999999887554               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                              ++.+.|..++|||+|+...+....
T Consensus       301 v~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~  332 (545)
T KOG1272|consen  301 VDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR  332 (545)
T ss_pred             ECCCCcEEeecccccceeEeeeccccccceee
Confidence                    788899999999999988665443

>KOG2106|consensus

Probab=98.53  E-value=1.6e-06  Score=60.40  Aligned_cols=98  Identities=12%  Similarity=0.088  Sum_probs=71.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      |++.|+++++|+-       .++.-+.. -..++.|+.|+|.| .++.|...|...+.|.++...               
T Consensus       385 T~gqdk~v~lW~~-------~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~y  455 (626)
T KOG2106|consen  385 TCGQDKHVRLWND-------HKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRY  455 (626)
T ss_pred             eccCcceEEEccC-------CceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEE
Confidence            8999999999992       34433322 45678899999988 888898889888888876332               


Q ss_pred             -------cceecCCcEEEEeCCCCcceee-ec-ccCcceeeEeeeeecccC
Q psy1285          71 -------AANSKDQTIKLWDVRKFSNKTA-QR-NTFRAVCEQNWEYRRENV  112 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~~~~~-~~-~~~~~v~~~~~~~~~~~~  112 (118)
                             +.|+.|+.|.+|.+........ .- -+..+++.++|+...+-+
T Consensus       456 sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~  506 (626)
T KOG2106|consen  456 SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFL  506 (626)
T ss_pred             cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceE
Confidence                   7788999999998765544332 22 344788888888765443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.52  E-value=2.1e-06  Score=56.02  Aligned_cols=83  Identities=12%  Similarity=0.057  Sum_probs=56.9

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCc-----cC--cEEEEEeCCCCCeEEE-eeCCCcEEEEecCCCCc---------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGH-----RD--GITFIDPKGDSRHLIS-NSKDQTIKLWDVRKFNG---------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h-----~~--~v~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~---------   70 (118)
                      ..++.|++||+..     .+....+..+     ..  ....++|+|+++.+.. .+.++.+.+||.++...         
T Consensus       176 ~~~~~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~  250 (300)
T TIGR03866       176 EIGGTVSVIDVAT-----RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQR  250 (300)
T ss_pred             CCCCEEEEEEcCc-----ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCC
Confidence            3589999999986     3443333211     11  2346889999987543 45567899999875432         


Q ss_pred             -------------cce-ecCCcEEEEeCCCCcceeeecc
Q psy1285          71 -------------AAN-SKDQTIKLWDVRKFSNKTAQRN   95 (118)
Q Consensus        71 -------------~s~-~~d~~i~iwd~~~~~~~~~~~~   95 (118)
                                   +++ ..+++|++||+++++....+..
T Consensus       251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence                         333 4589999999999998877763

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1539|consensus

Probab=98.52  E-value=5.6e-07  Score=65.56  Aligned_cols=96  Identities=19%  Similarity=0.170  Sum_probs=82.1

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeee---cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVL---AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      ..+.|+|-+|+++.     +-....+   ..|.++|.+++...-++.+++++.+|.++.||......             
T Consensus       466 G~S~G~Id~fNmQS-----Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~i  540 (910)
T KOG1539|consen  466 GYSKGTIDRFNMQS-----GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGI  540 (910)
T ss_pred             eccCCeEEEEEccc-----CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCccee
Confidence            45679999999987     4555555   47999999999988888999999999999999987542             


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                               +.+..|-.|+++|..+.+....+.+|.+.++.+.|++
T Consensus       541 v~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~  586 (910)
T KOG1539|consen  541 VYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP  586 (910)
T ss_pred             eeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC
Confidence                     6678899999999999999999999999999888875

>KOG2055|consensus

Probab=98.49  E-value=2e-06  Score=59.21  Aligned_cols=60  Identities=5%  Similarity=-0.017  Sum_probs=48.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCC-eEEEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSR-HLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~   68 (118)
                      +|+.|++++||.+...   ....++.+.--..+|.+.+|.|+|. .+++++.......||+.+.
T Consensus       230 vaG~d~~lrifqvDGk---~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  230 VAGLDGTLRIFQVDGK---VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             EecCCCcEEEEEecCc---cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            8999999999999852   2345555655567899999999998 8889999999999999753

>KOG1064|consensus

Probab=98.47  E-value=3.2e-07  Score=71.54  Aligned_cols=86  Identities=20%  Similarity=0.306  Sum_probs=69.9

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------c
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------A   71 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------~   71 (118)
                      ..-+.++.+.+||...+  +....++  .+|.+.+.++++-|....|++|+.+|.|++||++....             .
T Consensus      2309 g~s~d~~n~~lwDtl~~--~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~~~~~~f~ 2384 (2439)
T KOG1064|consen 2309 GRSSDNRNVCLWDTLLP--PMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQALDTREYFV 2384 (2439)
T ss_pred             ccCCCCCcccchhcccC--cccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhhhhhheee
Confidence            34455789999998752  1123334  67999999999999999999999999999999986433             7


Q ss_pred             ceecCCcEEEEeCCCCcceeeec
Q psy1285          72 ANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        72 s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                      +|+..|.++||++.....+..++
T Consensus      2385 ~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             ccCcccceEEEEccccchhhcCc
Confidence            89999999999999998777665

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.45  E-value=7.3e-06  Score=54.66  Aligned_cols=94  Identities=34%  Similarity=0.466  Sum_probs=73.1

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCC-eEEEeeCCCcEEEEecCCCCc-----------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSR-HLISNSKDQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~-----------------   70 (118)
                      .|+.+++|++..     ......+.+|...+.+++|+|++. .+++++.|+.+.+||.+....                 
T Consensus       176 ~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  250 (466)
T COG2319         176 LDGTIKLWDLRT-----GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS  250 (466)
T ss_pred             CCCceEEEEcCC-----CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeEC
Confidence            499999999986     677777888999999999999887 555668999999997652111                 


Q ss_pred             ------cceecCCcEEEEeCCCCcc-eeeecccCcceeeEeeee
Q psy1285          71 ------AANSKDQTIKLWDVRKFSN-KTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~  107 (118)
                            ++++.|+.+++|+.+.... ......|...+..+.|++
T Consensus       251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  294 (466)
T COG2319         251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP  294 (466)
T ss_pred             CCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence                  3577899999999997776 333345667788877766

>KOG2111|consensus

Probab=98.43  E-value=1.7e-06  Score=57.10  Aligned_cols=59  Identities=20%  Similarity=0.260  Sum_probs=49.7

Q ss_pred             ccccCceE-EEEeCCCCCCCCCCceeeec-C-ccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285           6 QVASLVTC-FVWDRRTLNETTAKPVGVLA-G-HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         6 ~~~~dg~v-~iwd~~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      |+|..|++ ||||...     +.++.+++ | ....|+|++|||+..+||..|..|++.+|.++...
T Consensus       198 TaStkGTLIRIFdt~~-----g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  198 TASTKGTLIRIFDTED-----GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EeccCcEEEEEEEcCC-----CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            77888876 9999987     67777765 2 34679999999999999999999999999998643

>KOG1274|consensus

Probab=98.43  E-value=2.3e-06  Score=62.98  Aligned_cols=103  Identities=16%  Similarity=0.135  Sum_probs=81.9

Q ss_pred             CCcccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           3 TKPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         3 ~~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      |.-++++||.||+|+....    .+...++.-+...|.+++-.  +++|++|+.+++|.+|.+.++..            
T Consensus        27 fi~tcgsdg~ir~~~~~sd----~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r  100 (933)
T KOG1274|consen   27 FICTCGSDGDIRKWKTNSD----EEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIR  100 (933)
T ss_pred             EEEEecCCCceEEeecCCc----ccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccce
Confidence            3448999999999998752    12222333367777777654  55999999999999999887544            


Q ss_pred             -----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeeccc
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  111 (118)
                                 +.|+.|-.|++-+.........+.+|..+|.++.|+++.+=
T Consensus       101 ~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f  152 (933)
T KOG1274|consen  101 DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF  152 (933)
T ss_pred             EEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCE
Confidence                       67888999999999999999999999999999999887653

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.41  E-value=8e-06  Score=51.22  Aligned_cols=92  Identities=14%  Similarity=0.163  Sum_probs=60.2

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecC-ccCcEEEEEeCCCCCeEEEe--eCCCcEEEEecCCCCc-----------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAG-HRDGITFIDPKGDSRHLISN--SKDQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~--~~d~~i~~wd~~~~~~-----------------   70 (118)
                      +...||.++..    ..+...+.- ..+.|.+++|+|+++.++..  ..++.|.+||++....                 
T Consensus        37 ~~~~l~~~~~~----~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G  112 (194)
T PF08662_consen   37 GEFELFYLNEK----NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDG  112 (194)
T ss_pred             eeEEEEEEecC----CCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCC
Confidence            45566666442    233333332 34579999999999987654  4577999999873211                 


Q ss_pred             ---ccee---cCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ---AANS---KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ---~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                         +.++   ..|.|.+||.++.+.+.... |. .++.+.|++.
T Consensus       113 ~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPd  154 (194)
T PF08662_consen  113 RFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPD  154 (194)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCC
Confidence               3433   35779999999877766554 33 3678888764

>smart00320 WD40 WD40 repeats

Probab=98.40  E-value=1.5e-06  Score=38.73  Aligned_cols=38  Identities=39%  Similarity=0.563  Sum_probs=33.1

Q ss_pred             CceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEe
Q psy1285          27 KPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD   64 (118)
Q Consensus        27 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd   64 (118)
                      .+...+..|...+.++.|++.+..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566778889999999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0974|consensus

Probab=98.40  E-value=5.2e-07  Score=66.75  Aligned_cols=78  Identities=19%  Similarity=0.226  Sum_probs=63.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ++|.|..+|+|++.+.    .......-+|..++..++|.|+  .+++++.|-++++|+......               
T Consensus       192 s~SdDRsiRlW~i~s~----~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~  265 (967)
T KOG0974|consen  192 SVSDDRSIRLWPIDSR----EVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIA  265 (967)
T ss_pred             EEecCcceeeeecccc----cccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEE
Confidence            7899999999999873    2333356689999999999987  899999999999996543221               


Q ss_pred             --------cceecCCcEEEEeCCCCcc
Q psy1285          71 --------AANSKDQTIKLWDVRKFSN   89 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~   89 (118)
                              ++++.|+.+++||+.....
T Consensus       266 ~~~~~~~~vT~g~Ds~lk~~~l~~r~~  292 (967)
T KOG0974|consen  266 VPIGVIIKVTGGNDSTLKLWDLNGRGL  292 (967)
T ss_pred             EcCCceEEEeeccCcchhhhhhhcccc
Confidence                    7889999999999875543

>KOG3881|consensus

Probab=98.38  E-value=2.4e-06  Score=57.67  Aligned_cols=96  Identities=10%  Similarity=0.096  Sum_probs=75.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      |+..-+++|+||.+..    ..|+..+.--...+.++...|.++.+.+|..-+.+..||.+....               
T Consensus       221 t~T~~hqvR~YDt~~q----RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi  296 (412)
T KOG3881|consen  221 TITRYHQVRLYDTRHQ----RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI  296 (412)
T ss_pred             EEecceeEEEecCccc----CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence            5667789999999863    677777776688899999999999999999999999999987433               


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                               ++++-|..+||+|+.+..++.... -....+.+..+
T Consensus       297 h~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~  340 (412)
T KOG3881|consen  297 HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLR  340 (412)
T ss_pred             EEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEec
Confidence                     778899999999999966554432 23334455543

>KOG0974|consensus

Probab=98.36  E-value=3.7e-06  Score=62.43  Aligned_cols=73  Identities=29%  Similarity=0.493  Sum_probs=58.6

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------   70 (118)
                      +.-+.|.+|+...    +..+. .+.+|.+.|+.+.++.+|+++++.+.|+++++|++.+.+.                 
T Consensus       152 sv~~~iivW~~~~----dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~  226 (967)
T KOG0974|consen  152 SVFGEIIVWKPHE----DNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCF  226 (967)
T ss_pred             cccccEEEEeccc----cCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEe
Confidence            3457889999873    12333 6789999999999999999999999999999999987554                 


Q ss_pred             -----cceecCCcEEEEeCC
Q psy1285          71 -----AANSKDQTIKLWDVR   85 (118)
Q Consensus        71 -----~s~~~d~~i~iwd~~   85 (118)
                           ++++.|.+.++|+..
T Consensus       227 ~~n~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  227 LPNRIITVGEDCTCRVWGVN  246 (967)
T ss_pred             ccceeEEeccceEEEEEecc
Confidence                 667778888888443

>KOG2919|consensus

Probab=98.35  E-value=5.9e-06  Score=54.92  Aligned_cols=96  Identities=16%  Similarity=0.191  Sum_probs=70.9

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecC--ccC---cEEEEEeCCCCCeEEEeeCCCcEEEEecCCC-Cc----------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAG--HRD---GITFIDPKGDSRHLISNSKDQTIKLWDVRKF-NG----------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~--h~~---~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~----------   70 (118)
                      .+.+.-|.|||.-+     ++....+.+  |.+   ...+++|+|||..|.+| .++.|++||+..+ +.          
T Consensus       129 ssr~~PIh~wdaft-----G~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~  202 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFT-----GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKG  202 (406)
T ss_pred             ccccCceeeeeccc-----cccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcc
Confidence            45678899999987     444444433  433   35689999999998665 7889999999432 21          


Q ss_pred             ---------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ---------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ---------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                           +.|+....+-||.-....+...+-+|.+.|+.+.|...
T Consensus       203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed  261 (406)
T KOG2919|consen  203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED  261 (406)
T ss_pred             cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC
Confidence                                 66777788888888888877777789999998777543

>KOG0650|consensus

Probab=98.32  E-value=1.3e-06  Score=61.87  Aligned_cols=41  Identities=24%  Similarity=0.364  Sum_probs=38.0

Q ss_pred             eeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285          30 GVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus        30 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      ..+.+|.+.|.++...|.|..|++|+.||++++|.+.++++
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc  434 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC  434 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE
Confidence            45789999999999999999999999999999999998776

>KOG1517|consensus

Probab=98.28  E-value=5e-06  Score=62.48  Aligned_cols=75  Identities=19%  Similarity=0.316  Sum_probs=55.8

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeec-CccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLA-GHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +.-..|||||...     ......+- +....+.++.-+. .|+.+++|..||.+++||.|....               
T Consensus      1184 Gd~r~IRIWDa~~-----E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHK-----EQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred             CCeeEEEEEeccc-----ceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence            3356899999976     33333332 3344566665543 578999999999999999986433               


Q ss_pred             --------------cceecCCcEEEEeCCCC
Q psy1285          71 --------------AANSKDQTIKLWDVRKF   87 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~   87 (118)
                                    ++|+.+|.|.+||+|..
T Consensus      1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             ceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence                          78999999999999985

>KOG0650|consensus

Probab=98.28  E-value=2.3e-06  Score=60.74  Aligned_cols=100  Identities=19%  Similarity=0.190  Sum_probs=74.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++....|||||+..     ...+..+..-...|.+++.+|.|..|+.++.|+.++.+|+.-...               
T Consensus       582 fVaTq~~vRiYdL~k-----qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~V  656 (733)
T KOG0650|consen  582 FVATQRSVRIYDLSK-----QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSV  656 (733)
T ss_pred             EEEeccceEEEehhH-----HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhh
Confidence            567788999999976     555555555566788999999999999999999999999865422               


Q ss_pred             ---------cceecCCcEEEEeCC------CCcce---eeecccCcc----eeeEeeeeecc
Q psy1285          71 ---------AANSKDQTIKLWDVR------KFSNK---TAQRNTFRA----VCEQNWEYRRE  110 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~------~~~~~---~~~~~~~~~----v~~~~~~~~~~  110 (118)
                               ++|+.|+++.|+.-+      ....+   +.+.+|...    |..+.|+++.+
T Consensus       657 a~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp  718 (733)
T KOG0650|consen  657 AFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP  718 (733)
T ss_pred             hhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc
Confidence                     888999999998432      22222   344566654    77788887654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.27  E-value=2.7e-05  Score=51.91  Aligned_cols=88  Identities=33%  Similarity=0.440  Sum_probs=67.3

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeC-CCcEEEEecCCCCc----------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSK-DQTIKLWDVRKFNG----------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~----------------   70 (118)
                      ..|+.+++|+...    .......+..|...+..++|+|++..+++++. |+.+++|+......                
T Consensus       131 ~~d~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  206 (466)
T COG2319         131 SLDGTVKLWDLST----PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF  206 (466)
T ss_pred             CCCccEEEEEecC----CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEE
Confidence            3488999999974    13566677889999999999999998888885 99999999985221                


Q ss_pred             --------cceecCCcEEEEeCCCCccee-eecccCcc
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKT-AQRNTFRA   99 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~   99 (118)
                              ++++.|+.|++||.+...... .+..|...
T Consensus       207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  244 (466)
T COG2319         207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS  244 (466)
T ss_pred             cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc
Confidence                    223678999999888666655 45555554

>KOG0649|consensus

Probab=98.27  E-value=1.7e-05  Score=51.12  Aligned_cols=102  Identities=13%  Similarity=0.046  Sum_probs=75.4

Q ss_pred             cccCceEEEEeCCCCCC-----CCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------
Q psy1285           7 VASLVTCFVWDRRTLNE-----TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------   70 (118)
                      +..+|+|.++.++....     ....++...++|.++++.++|.  ..+|++|+ ||.|+-|..+....           
T Consensus        28 gn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~  104 (325)
T KOG0649|consen   28 GNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVK  104 (325)
T ss_pred             ecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhc
Confidence            45689999999875221     1223445568999999999999  55777775 59999887653211           


Q ss_pred             -------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeeccc
Q psy1285          71 -------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        71 -------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  111 (118)
                                               ..++.|+.+.-||+.+++....+.+|.+++.+++-.-+.++
T Consensus       105 ~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q  170 (325)
T KOG0649|consen  105 IPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ  170 (325)
T ss_pred             CccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence                                     45668999999999999999999999998887776444443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.26  E-value=1.3e-05  Score=50.34  Aligned_cols=54  Identities=20%  Similarity=0.275  Sum_probs=41.8

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCC---CcEEEEecCCCCc
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKD---QTIKLWDVRKFNG   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~   70 (118)
                      .+..|.+||++      .+++..+.  ...+..+.|+|+|++++.++.+   |.+.+||.++...
T Consensus        81 ~~~~v~lyd~~------~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~  137 (194)
T PF08662_consen   81 MPAKVTLYDVK------GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK  137 (194)
T ss_pred             CCcccEEEcCc------ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence            45689999996      46666654  4567899999999999988753   6799999986543

>KOG1009|consensus

Probab=98.23  E-value=9e-06  Score=55.23  Aligned_cols=65  Identities=31%  Similarity=0.406  Sum_probs=50.8

Q ss_pred             ccccCceEEEEeCCCCC---CCC--------CCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285           6 QVASLVTCFVWDRRTLN---ETT--------AKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~---~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      +++.+|.|.+|-.....   ..+        -.....+.+|...++.++|+|+++.+++++.|+++++||+..+..
T Consensus        82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l  157 (434)
T KOG1009|consen   82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL  157 (434)
T ss_pred             ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee
Confidence            57788999999876100   001        122345678999999999999999999999999999999997654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.19  E-value=1.4e-05  Score=55.74  Aligned_cols=91  Identities=14%  Similarity=0.063  Sum_probs=59.4

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCC---CcEEEEecCCCCc----------------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKD---QTIKLWDVRKFNG----------------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~----------------   70 (118)
                      +..|.+||...     .. ...+..|...+...+|+|+|+.|+..+.+   ..|.+||+.+...                
T Consensus       183 ~~~i~i~d~dg-----~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS  256 (429)
T PRK01742        183 PYEVRVADYDG-----FN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS  256 (429)
T ss_pred             eEEEEEECCCC-----CC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence            57999999875     23 34566678889999999999999887653   3699999875431                


Q ss_pred             ------cc-eecCCcEEEE--eCCCCcceeeecccCcceeeEeeee
Q psy1285          71 ------AA-NSKDQTIKLW--DVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ------~s-~~~d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                            +. .+.++.+.||  |+.... ...+..+...+....|++
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp  301 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP  301 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC
Confidence                  22 3457766665  554443 333433444455555654

>KOG4532|consensus

Probab=98.18  E-value=3.8e-05  Score=50.08  Aligned_cols=95  Identities=14%  Similarity=0.040  Sum_probs=68.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCc--EEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDG--ITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      -++.|.++++.++...     ...  ...|...  .+++.++++++.+++.+....|..|.+.....             
T Consensus       133 i~sndht~k~~~~~~~-----s~~--~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~  205 (344)
T KOG4532|consen  133 IASNDHTGKTMVVSGD-----SNK--FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH  205 (344)
T ss_pred             eccCCcceeEEEEecC-----ccc--ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence            4677888888888642     111  1113332  77889999999999988888888887654221             


Q ss_pred             -------------cceecCCcEEEEeCCCCcceeee-----cccCcceeeEeeee
Q psy1285          71 -------------AANSKDQTIKLWDVRKFSNKTAQ-----RNTFRAVCEQNWEY  107 (118)
Q Consensus        71 -------------~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~  107 (118)
                                   +++..||++.|||+|....+...     +.|.+.+..+.|++
T Consensus       206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl  260 (344)
T KOG4532|consen  206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL  260 (344)
T ss_pred             ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC
Confidence                         88999999999999988765422     35667788888875

>KOG4190|consensus

Probab=98.17  E-value=5e-06  Score=58.99  Aligned_cols=83  Identities=25%  Similarity=0.235  Sum_probs=63.6

Q ss_pred             cccccCceEEEEeCCCCCCC--CCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           5 PQVASLVTCFVWDRRTLNET--TAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      ..++.|.+|++|.++.....  +.....+++.|..+|.++.|-.+.+.++++  |+-|.+||.-..+.            
T Consensus       751 iSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a  828 (1034)
T KOG4190|consen  751 ISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGA  828 (1034)
T ss_pred             eeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCC
Confidence            37899999999999863322  344667888999999999998888887764  78999999764332            


Q ss_pred             ---------------cc-eecCCcEEEEeCCCCcc
Q psy1285          71 ---------------AA-NSKDQTIKLWDVRKFSN   89 (118)
Q Consensus        71 ---------------~s-~~~d~~i~iwd~~~~~~   89 (118)
                                     +. ++.+.+|+++|.|...-
T Consensus       829 ~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~  863 (1034)
T KOG4190|consen  829 GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW  863 (1034)
T ss_pred             CceeEecccCcchheeeeccchhhheeeecccccc
Confidence                           23 35688999999987653

>KOG4547|consensus

Probab=98.16  E-value=3.8e-05  Score=54.20  Aligned_cols=94  Identities=10%  Similarity=-0.026  Sum_probs=76.0

Q ss_pred             CceEEEEeCCCCCCCCCCceeee--cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVL--AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------   70 (118)
                      .|.|.++++..     ++.-..+  ..|.+.|.++-++.+-.++-+++.|+.+.+|+......                 
T Consensus        79 ~g~v~~ys~~~-----g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is  153 (541)
T KOG4547|consen   79 QGSVLLYSVAG-----GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCIS  153 (541)
T ss_pred             CccEEEEEecC-----CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEc
Confidence            46788888876     4544444  46999999999999889999999999999999876432                 


Q ss_pred             ----cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ----AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ----~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                          ..+...++|++||+.+.+....|.+|.++|..+.|-..
T Consensus       154 ~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  154 PDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             CCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence                23334578999999999999999999999999888555

>KOG2321|consensus

Probab=98.14  E-value=2e-05  Score=55.94  Aligned_cols=93  Identities=10%  Similarity=0.242  Sum_probs=67.3

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------------   70 (118)
                      ..|.-+++..     +.-+..+..-.+.++++..++...+|++|+.+|.|..||.+....                    
T Consensus       155 ~evYRlNLEq-----GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~  229 (703)
T KOG2321|consen  155 SEVYRLNLEQ-----GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAP  229 (703)
T ss_pred             cceEEEEccc-----cccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccC
Confidence            3343345544     555555665668899999999888999999999999999986332                    


Q ss_pred             --------------cceecCCcEEEEeCCCCcceeeec-ccCcceeeEeeeee
Q psy1285          71 --------------AANSKDQTIKLWDVRKFSNKTAQR-NTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~  108 (118)
                                    ++|..+|.+.|||+|+.++...-. +-.-++..+.|..+
T Consensus       230 svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  230 SVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             cceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence                          678889999999999888764332 23345667777443

>KOG1240|consensus

Probab=98.14  E-value=4.9e-06  Score=63.18  Aligned_cols=61  Identities=25%  Similarity=0.498  Sum_probs=51.2

Q ss_pred             CCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc------------------------------ccee
Q psy1285          26 AKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG------------------------------AANS   74 (118)
Q Consensus        26 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~------------------------------~s~~   74 (118)
                      +..+..+..|...+..++.++ ++.++++|+.||+|++||.+....                              +.++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            667778888999988888876 569999999999999999985332                              6778


Q ss_pred             cCCcEEEEeCCC
Q psy1285          75 KDQTIKLWDVRK   86 (118)
Q Consensus        75 ~d~~i~iwd~~~   86 (118)
                      .||.|++.++..
T Consensus      1118 ~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDH 1129 (1431)
T ss_pred             CCCeEEEEEccc
Confidence            999999998865

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.13  E-value=6.5e-05  Score=51.58  Aligned_cols=84  Identities=18%  Similarity=0.083  Sum_probs=61.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +...++.|.+.|..+     .+.+..+.........+.|+||++++...+.|+.|.++|+.+...               
T Consensus        11 ~~~~~~~v~viD~~t-----~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~   85 (369)
T PF02239_consen   11 VERGSGSVAVIDGAT-----NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV   85 (369)
T ss_dssp             EEGGGTEEEEEETTT------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred             EecCCCEEEEEECCC-----CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence            445689999999987     677777775444345678999999999999999999999998654               


Q ss_pred             -------c-ceecCCcEEEEeCCCCcceeeec
Q psy1285          71 -------A-ANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 -------~-s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                             + +.-.++.+.++|.++.+..+.+.
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             cCCCCEEEEEecCCCceeEeccccccceeecc
Confidence                   3 33357899999999998887664

...

>KOG1524|consensus

Probab=98.09  E-value=4.1e-05  Score=54.12  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=35.1

Q ss_pred             eecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285          31 VLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus        31 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      .+++|.+-|.++.|++....+++|+.|-..++||-....
T Consensus       181 ~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~  219 (737)
T KOG1524|consen  181 RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN  219 (737)
T ss_pred             EEeccCcEEEEeecCccccceeecCCceeEEeecccCcc
Confidence            467899999999999999999999999999999987543

>KOG2695|consensus

Probab=98.09  E-value=6.3e-06  Score=55.21  Aligned_cols=89  Identities=15%  Similarity=0.138  Sum_probs=65.3

Q ss_pred             CCcccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           3 TKPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         3 ~~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      ++..++.+..|-+-++.+      ...+.+. ..+.|+.+.|...++.+..|..+|.|...|+|....            
T Consensus       226 yhfs~G~sqqv~L~nvet------g~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~  298 (425)
T KOG2695|consen  226 YHFSVGLSQQVLLTNVET------GHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD  298 (425)
T ss_pred             eeecccccceeEEEEeec------ccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC
Confidence            344566666777767664      2223344 567899999998889999999999999999986532            


Q ss_pred             ----------------cceecCCcEEEEeCCCCcc---eeeecccCc
Q psy1285          71 ----------------AANSKDQTIKLWDVRKFSN---KTAQRNTFR   98 (118)
Q Consensus        71 ----------------~s~~~d~~i~iwd~~~~~~---~~~~~~~~~   98 (118)
                                      ++.+-+|+|++||.|.-+.   +...++|-+
T Consensus       299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN  345 (425)
T KOG2695|consen  299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN  345 (425)
T ss_pred             cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc
Confidence                            5556799999999998887   555556643

>KOG2110|consensus

Probab=98.04  E-value=0.0001  Score=49.75  Aligned_cols=79  Identities=16%  Similarity=0.279  Sum_probs=61.2

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecC---ccCcEEEEEeCCCCCeEEEee--CCCcEEEEecCCCCc---------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAG---HRDGITFIDPKGDSRHLISNS--KDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~---------------   70 (118)
                      ..|.|||++.     +++++++..   +...+..+.++..+.+++-.+  ..|.|.+||..+...               
T Consensus       106 e~IyIydI~~-----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAala  180 (391)
T KOG2110|consen  106 ESIYIYDIKD-----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALA  180 (391)
T ss_pred             ccEEEEeccc-----ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEE
Confidence            4689999987     788877753   444566666676777888654  358899999987654               


Q ss_pred             --------cceecCCc-EEEEeCCCCcceeeec
Q psy1285          71 --------AANSKDQT-IKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 --------~s~~~d~~-i~iwd~~~~~~~~~~~   94 (118)
                              +++|..|+ |||+.+..++...++.
T Consensus       181 fs~~G~llATASeKGTVIRVf~v~~G~kl~eFR  213 (391)
T KOG2110|consen  181 FSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR  213 (391)
T ss_pred             ECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence                    78888887 8999999999988886

>KOG2321|consensus

Probab=98.02  E-value=2.6e-05  Score=55.39  Aligned_cols=87  Identities=16%  Similarity=0.293  Sum_probs=61.5

Q ss_pred             ccCceEEEEeCCCCCC-CCCCceeeecCccCc-----EEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------
Q psy1285           8 ASLVTCFVWDRRTLNE-TTAKPVGVLAGHRDG-----ITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~-~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------   70 (118)
                      +.+|.|..||.+.... ...........|.+.     |.++.|+-+|-.++.|..+|.+.+||++....           
T Consensus       194 t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p  273 (703)
T KOG2321|consen  194 TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP  273 (703)
T ss_pred             ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence            3489999999986211 001111112234443     99999998899999999999999999997543           


Q ss_pred             --------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 --------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                                    +.......++|||--+++....++
T Consensus       274 i~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE  311 (703)
T KOG2321|consen  274 IKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE  311 (703)
T ss_pred             eeeecccccCCCceEEecchHHhhhcccccCCceeecc
Confidence                          333455679999999988876655

>KOG3914|consensus

Probab=97.93  E-value=1.9e-05  Score=53.46  Aligned_cols=60  Identities=20%  Similarity=0.227  Sum_probs=47.9

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeec-CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLA-GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      .|+-.|.+||+-....     ...+..+. ||...|..++.-+ +..|+++|.|+++++||+.++..
T Consensus       167 itaDRDEkIRvs~ypa-----~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  167 ITADRDEKIRVSRYPA-----TFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             EEecCCceEEEEecCc-----ccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecccCCc
Confidence            3788899999977765     34444444 7999999998875 45689999999999999998765

>KOG0882|consensus

Probab=97.92  E-value=6.5e-06  Score=56.82  Aligned_cols=104  Identities=16%  Similarity=0.088  Sum_probs=77.6

Q ss_pred             CCcccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeC-CCcEEEEecCCCCc-----------
Q psy1285           3 TKPQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSK-DQTIKLWDVRKFNG-----------   70 (118)
Q Consensus         3 ~~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~-----------   70 (118)
                      |+++|+.||.++.|.-...  ...+.+..+..|.+.+.+++.+.++..+++.+. |..++++|+.+...           
T Consensus        22 fiiqASlDGh~KFWkKs~i--sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg   99 (558)
T KOG0882|consen   22 FIIQASLDGHKKFWKKSRI--SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG   99 (558)
T ss_pred             eEEeeecchhhhhcCCCCc--cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC
Confidence            5679999999999997641  123555667789999999999999999999777 99999999987543           


Q ss_pred             ----------------cceecCCcEEEEeCCCCccee-eec-ccCcceeeEeeeee
Q psy1285          71 ----------------AANSKDQTIKLWDVRKFSNKT-AQR-NTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ----------------~s~~~d~~i~iwd~~~~~~~~-~~~-~~~~~v~~~~~~~~  108 (118)
                                      ++.-.++.+.++|-+...++. .+. .|.++|....+.+.
T Consensus       100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa  155 (558)
T KOG0882|consen  100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA  155 (558)
T ss_pred             ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecc
Confidence                            333457899999988777543 222 56666666555443

>KOG1523|consensus

Probab=97.91  E-value=9.5e-05  Score=49.17  Aligned_cols=99  Identities=14%  Similarity=0.148  Sum_probs=75.4

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      ....|-||.....+  .-++.+++..|...|.+++|+|..+.+.+|+.|+--.+|.......                  
T Consensus        30 ~~~evhiy~~~~~~--~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~  107 (361)
T KOG1523|consen   30 NNHEVHIYSMLGAD--LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVK  107 (361)
T ss_pred             CCceEEEEEecCCC--CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEe
Confidence            34578888876521  2567889999999999999999999999999999999998853221                  


Q ss_pred             --------cceecCCcEEEEeCCCCccee---eec-ccCcceeeEeeeeec
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKT---AQR-NTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~---~~~-~~~~~v~~~~~~~~~  109 (118)
                              ++|+....|-||-+....--.   .+. .+...|+++.|+++.
T Consensus       108 WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn  158 (361)
T KOG1523|consen  108 WSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN  158 (361)
T ss_pred             ecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence                    788888999999988766542   222 455668888887654

>KOG1354|consensus

Probab=97.89  E-value=4.7e-05  Score=51.18  Aligned_cols=81  Identities=17%  Similarity=0.193  Sum_probs=54.8

Q ss_pred             cccCceEEEEeCCCCC-CC----------CCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----
Q psy1285           7 VASLVTCFVWDRRTLN-ET----------TAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~-~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----   70 (118)
                      -++.|+||+.|++..- ++          .+.....+.+--+.|..+.|+++|+++++-++ .+|++||+.....     
T Consensus       232 SSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~  310 (433)
T KOG1354|consen  232 SSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY  310 (433)
T ss_pred             ecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE
Confidence            3567999999998411 00          01111112223357889999999999998644 5899999964322     


Q ss_pred             ----------------------------------cceecCCcEEEEeCCCCc
Q psy1285          71 ----------------------------------AANSKDQTIKLWDVRKFS   88 (118)
Q Consensus        71 ----------------------------------~s~~~d~~i~iwd~~~~~   88 (118)
                                                        ++|+....+++++...+.
T Consensus       311 ~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  311 PVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             eehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence                                              788889999999965444

>KOG1409|consensus

Probab=97.88  E-value=1.9e-05  Score=52.93  Aligned_cols=59  Identities=25%  Similarity=0.353  Sum_probs=48.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      ..+.|..+.+||+-..    ......+.+|.+.|..+..-+--+.+.+++.|+.|.+||....
T Consensus       214 Sg~~d~~vi~wdigg~----~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  214 SGASDHSVIMWDIGGR----KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             eccccCceEEEeccCC----cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            5677899999999752    3445667889999999988877889999999999999998753

>KOG2139|consensus

Probab=97.88  E-value=0.00027  Score=47.90  Aligned_cols=100  Identities=11%  Similarity=0.173  Sum_probs=66.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC-CCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD-SRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      .+..|-.||+||-+.     ..+..--...+..|.|++|-|. +..|+.++.. -|++|.....-.              
T Consensus       115 va~nddvVriy~kss-----t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~q  188 (445)
T KOG2139|consen  115 VATNDDVVRIYDKSS-----TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQ  188 (445)
T ss_pred             hhccCcEEEEeccCC-----CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchh
Confidence            567799999999875     2322222235678999999984 4566666544 588997643111              


Q ss_pred             ----------------------ccee-cCCcEEEEeCCCCcceeeecccCcceeeEeeeeeccc
Q psy1285          71 ----------------------AANS-KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        71 ----------------------~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  111 (118)
                                            ++++ .|..|.|||+.++...--..-..+.++-+.|++...-
T Consensus       189 vl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~  252 (445)
T KOG2139|consen  189 VLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV  252 (445)
T ss_pred             heeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE
Confidence                                  4445 4678999999998775444344456778888876654

>KOG4714|consensus

Probab=97.85  E-value=2.3e-05  Score=50.83  Aligned_cols=59  Identities=25%  Similarity=0.380  Sum_probs=51.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      ..+.||.+-+||.+..    ..+...+..|+.+++.+-|+| ++.+|.+++.||.+.-||..+.
T Consensus       197 cgt~dg~~~l~d~rn~----~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~  256 (319)
T KOG4714|consen  197 CGTDDGIVGLWDARNV----AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT  256 (319)
T ss_pred             EecCCCeEEEEEcccc----cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence            4567899999999973    566677889999999999998 6789999999999999999853

>KOG0309|consensus

Probab=97.84  E-value=8.5e-05  Score=54.46  Aligned_cols=102  Identities=20%  Similarity=0.318  Sum_probs=70.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      |++.|-.+-.||++.+    ..++..+..-......++|+.....+++.+..+.|.+||.+....               
T Consensus       132 tcsvdt~vh~wd~rSp----~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~  207 (1081)
T KOG0309|consen  132 TCSVDTYVHAWDMRSP----HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSI  207 (1081)
T ss_pred             eccccccceeeeccCC----CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehH
Confidence            7888999999999974    456655555555678899998555555666778899999986543               


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecccCcc
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPR  114 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  114 (118)
                                .+.+.|++|++||..+........   ..-....|-.++-|+..
T Consensus       208 ~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~---vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  208 DFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT---VTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             HHhhhhhhhhcccCCCCceeeeccccccccccee---ccccCcceeccccccCc
Confidence                      677889999999987665432221   11223446566555543

>KOG4497|consensus

Probab=97.78  E-value=7.1e-05  Score=50.17  Aligned_cols=59  Identities=19%  Similarity=0.287  Sum_probs=46.4

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEE-eeCCCcEEEEecCCCCc
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLIS-NSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~   70 (118)
                      +..|+.|++|++..     .+--..+..-+..+..++|||+|++++. ..-|-.|.+|.+.+...
T Consensus        67 ~yk~~~vqvwsl~Q-----pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~  126 (447)
T KOG4497|consen   67 AYKDPKVQVWSLVQ-----PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG  126 (447)
T ss_pred             eeccceEEEEEeec-----ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence            45688999999987     5555566666778999999999987764 55688999999987544

>KOG1523|consensus

Probab=97.78  E-value=0.00013  Score=48.52  Aligned_cols=77  Identities=19%  Similarity=0.205  Sum_probs=62.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      |++.|..-.+|.....  .+-++...+..+.+.+.++.|+|.++.+++|+.-+.|.||-++..+.               
T Consensus        72 tcs~drnayVw~~~~~--~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv  149 (361)
T KOG1523|consen   72 TCSHDRNAYVWTQPSG--GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV  149 (361)
T ss_pred             EccCCCCccccccCCC--CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence            8899999999998542  23456666777999999999999999999999999999987765332               


Q ss_pred             ------------cceecCCcEEEEeC
Q psy1285          71 ------------AANSKDQTIKLWDV   84 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~   84 (118)
                                  +.|+.|++.+++..
T Consensus       150 ~sldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  150 TSLDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             eeeeccCCcceecccccCcceeEEEE
Confidence                        78899999999953

>KOG0280|consensus

Probab=97.73  E-value=0.00013  Score=48.04  Aligned_cols=60  Identities=18%  Similarity=0.169  Sum_probs=48.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      +.+.|+.+.-||++.+   .....+..+-|...|.++.-+| .+.++++|++|-.|++||.|+.
T Consensus       183 tGgDD~~l~~~D~R~p---~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm  243 (339)
T KOG0280|consen  183 TGGDDGSLSCWDIRIP---KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM  243 (339)
T ss_pred             ecCCCceEEEEEecCC---cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence            7788999999999952   1233333556888999998876 6789999999999999999963

>KOG4714|consensus

Probab=97.72  E-value=0.00013  Score=47.46  Aligned_cols=50  Identities=22%  Similarity=0.413  Sum_probs=41.5

Q ss_pred             CcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc-------------------------cceecCCcEEEEeCCC
Q psy1285          37 DGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG-------------------------AANSKDQTIKLWDVRK   86 (118)
Q Consensus        37 ~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~-------------------------~s~~~d~~i~iwd~~~   86 (118)
                      ..|.+++-+| +.+.++.|+.||.+.+||.++...                         .+++.||.+..||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            3488898888 456677888999999999998643                         7889999999999884

>KOG1409|consensus

Probab=97.71  E-value=0.00054  Score=46.18  Aligned_cols=64  Identities=20%  Similarity=0.428  Sum_probs=54.9

Q ss_pred             CCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------------cceecCCcEEE
Q psy1285          26 AKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------------AANSKDQTIKL   81 (118)
Q Consensus        26 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------------~s~~~d~~i~i   81 (118)
                      -.++.++.+|.+.+.+++|.+....|.+|..|..+.+||+--...                        .+++.|+.|-+
T Consensus       187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~  266 (404)
T KOG1409|consen  187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV  266 (404)
T ss_pred             CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence            567778899999999999999888999999999999999965433                        67788999999


Q ss_pred             EeCCCCcc
Q psy1285          82 WDVRKFSN   89 (118)
Q Consensus        82 wd~~~~~~   89 (118)
                      ||......
T Consensus       267 w~mn~~r~  274 (404)
T KOG1409|consen  267 WNMNVKRV  274 (404)
T ss_pred             Eeccceee
Confidence            99876554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.71  E-value=0.00028  Score=50.19  Aligned_cols=57  Identities=14%  Similarity=0.156  Sum_probs=47.6

Q ss_pred             CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------------cceecCCcEEEEeCCCCcce
Q psy1285          34 GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------------AANSKDQTIKLWDVRKFSNK   90 (118)
Q Consensus        34 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------------~s~~~d~~i~iwd~~~~~~~   90 (118)
                      .....+.|.+++|+...|+.|+.||+|.+||......                     ++|+..|.+.+||+.-....
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence            3677899999999999999999999999999876432                     67788899999998755443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.71  E-value=0.00083  Score=47.05  Aligned_cols=52  Identities=12%  Similarity=-0.002  Sum_probs=39.3

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeC---CCcEEEEecCCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSK---DQTIKLWDVRKF   68 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~   68 (118)
                      ..|.++|...      .....+..|.+.+.+.+|+|||+.|+..+.   +..|.+||+.+.
T Consensus       182 ~~l~~~d~dg------~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g  236 (435)
T PRK05137        182 KRLAIMDQDG------ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG  236 (435)
T ss_pred             eEEEEECCCC------CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC
Confidence            4777888753      333456667888999999999998887653   467999998754

>KOG4227|consensus

Probab=97.69  E-value=0.00022  Score=48.93  Aligned_cols=79  Identities=16%  Similarity=0.169  Sum_probs=62.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCcc---CcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHR---DGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      ..+.+++|.+.|+.+     .+.+..+. |.   +.|+.+..+|..+.|++.+.++.|.+||.+....            
T Consensus       122 SG~~~~~VI~HDiEt-----~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~  195 (609)
T KOG4227|consen  122 SGERWGTVIKHDIET-----KQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK  195 (609)
T ss_pred             cCCCcceeEeeeccc-----ceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence            566789999999986     44444433 44   4899999999989999999999999999986442            


Q ss_pred             ---------------cceecCCcEEEEeCCCCcce
Q psy1285          71 ---------------AANSKDQTIKLWDVRKFSNK   90 (118)
Q Consensus        71 ---------------~s~~~d~~i~iwd~~~~~~~   90 (118)
                                     ++.+..+-+.+||+|.+...
T Consensus       196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~  230 (609)
T KOG4227|consen  196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARP  230 (609)
T ss_pred             cceeeeecCCCceeEEeccccCCCCceeeccccch
Confidence                           56677788999999987654

>KOG0771|consensus

Probab=97.67  E-value=0.00014  Score=49.62  Aligned_cols=51  Identities=20%  Similarity=0.429  Sum_probs=41.9

Q ss_pred             EEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------------cceecCCcEEEEeCCCCccee
Q psy1285          40 TFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------------AANSKDQTIKLWDVRKFSNKT   91 (118)
Q Consensus        40 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------------~s~~~d~~i~iwd~~~~~~~~   91 (118)
                      .+++|+++|..+++++.||++++|+..+...                       ++-+.| ..+||+..++..+.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence            7899999999999999999999999665332                       555666 99999999985443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.66  E-value=0.00029  Score=49.28  Aligned_cols=93  Identities=13%  Similarity=0.023  Sum_probs=59.6

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      .+|..+||+++..    ......+ .+.+  ....|+|+|+.++..+.++ +.+||+.+...                  
T Consensus       312 ~~g~~~I~~~~~~----~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG  383 (429)
T PRK01742        312 RSGSPQVYRMSAS----GGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNG  383 (429)
T ss_pred             CCCCceEEEEECC----CCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCC
Confidence            3567788877541    1112222 3333  4578999999998877765 44588765321                  


Q ss_pred             ---cceecCCcEEEEeC--CCCcceeeecccCcceeeEeeeeec
Q psy1285          71 ---AANSKDQTIKLWDV--RKFSNKTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 ---~s~~~d~~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~  109 (118)
                         +.++.++.+.+|++  ..+.....+..+...+....|++..
T Consensus       384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             CEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCCC
Confidence               55566777777775  3466666777777777888888654

>KOG1963|consensus

Probab=97.66  E-value=0.0005  Score=50.75  Aligned_cols=98  Identities=11%  Similarity=0.124  Sum_probs=68.8

Q ss_pred             CceEEEEeCCCCCCCCCCceeee-cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC--CCc----------------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVL-AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK--FNG----------------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~--~~~----------------   70 (118)
                      +..+.+|.......  ....... ..|.-.+.|.+++|.+++++++..||.|.+|.-..  ...                
T Consensus       180 ~~~~~~~~v~~~~~--~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L  257 (792)
T KOG1963|consen  180 MCKIHIYFVPKHTK--HTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL  257 (792)
T ss_pred             eeeEEEEEecccce--eeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence            44566677765210  1111111 23666689999999999999999999999996443  111                


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecc
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                               .+|+.++-+.+|.+.+++ .+-++....++..++|++.-.
T Consensus       258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~  305 (792)
T KOG1963|consen  258 SFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSD  305 (792)
T ss_pred             EEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCC
Confidence                     789999999999999988 445566777888888875443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.63  E-value=0.00061  Score=47.66  Aligned_cols=53  Identities=11%  Similarity=-0.049  Sum_probs=37.3

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCC---CcEEEEecCCC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKD---QTIKLWDVRKF   68 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~   68 (118)
                      ...|.++|...      .....+..+.+.+.+.+|+|+|+.|+..+.+   ..|.+||+.+.
T Consensus       175 ~~~L~~~D~dG------~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g  230 (427)
T PRK02889        175 RYQLQISDADG------QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG  230 (427)
T ss_pred             ccEEEEECCCC------CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            34666777643      3333445577889999999999998876643   35899998754

>KOG2139|consensus

Probab=97.62  E-value=0.00088  Score=45.53  Aligned_cols=100  Identities=18%  Similarity=0.260  Sum_probs=63.1

Q ss_pred             ccccCceEEEEeCCCCCCCCC-------Cc--eeeecCccCcEEEEEeCCCCCeEEEeeC-CCcEEEEecCCCCc-----
Q psy1285           6 QVASLVTCFVWDRRTLNETTA-------KP--VGVLAGHRDGITFIDPKGDSRHLISNSK-DQTIKLWDVRKFNG-----   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~-------~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~-----   70 (118)
                      .++-.+-|.||..........       .+  +....+| ..|.++.|++||..+++++. |..|.+||+.+...     
T Consensus       157 avgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~  235 (445)
T KOG2139|consen  157 AVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP  235 (445)
T ss_pred             eeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc
Confidence            344556788898764111000       11  1122234 57999999999999998875 57899999987544     


Q ss_pred             ------------------cceecCCcEEEEeCC-CCcceeeecccCcceeeEeeee
Q psy1285          71 ------------------AANSKDQTIKLWDVR-KFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ------------------~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                                        .++..|+..++|+.. +.....-.. ..+.|....|++
T Consensus       236 ~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWsp  290 (445)
T KOG2139|consen  236 KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSP  290 (445)
T ss_pred             cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecC
Confidence                              556779999999544 334333332 233677777764

>KOG1275|consensus

Probab=97.62  E-value=0.00032  Score=52.51  Aligned_cols=70  Identities=21%  Similarity=0.323  Sum_probs=56.5

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeC---------CCcEEEEecCCCCc-------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSK---------DQTIKLWDVRKFNG-------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~-------   70 (118)
                      +...|+|.+-|.+.     .+.++++.+|.+.+..++..  |+.|++||.         |.-|+|||+|+.+.       
T Consensus       193 G~t~G~V~LrD~~s-----~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~  265 (1118)
T KOG1275|consen  193 GDTRGTVFLRDPNS-----FETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP  265 (1118)
T ss_pred             ecccceEEeecCCc-----Cceeeeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccc
Confidence            44568999999987     78999999999999877655  889999885         56789999997654       


Q ss_pred             ----------------cceecCCcEEEEe
Q psy1285          71 ----------------AANSKDQTIKLWD   83 (118)
Q Consensus        71 ----------------~s~~~d~~i~iwd   83 (118)
                                      +..+..|...+-|
T Consensus       266 ~~P~flrf~Psl~t~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  266 YGPQFLRFHPSLTTRLAVTSQSGQFQFVD  294 (1118)
T ss_pred             cCchhhhhcccccceEEEEecccceeecc
Confidence                            5566778888887

>KOG0309|consensus

Probab=97.55  E-value=0.00014  Score=53.45  Aligned_cols=93  Identities=25%  Similarity=0.363  Sum_probs=65.8

Q ss_pred             eEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCC-CeEEEeeCCCcEEEEecCCCCc--------------------
Q psy1285          12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDS-RHLISNSKDQTIKLWDVRKFNG--------------------   70 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~--------------------   70 (118)
                      .-.+|.+.....  ...-..+.+|...+..+.|+|+. ..+++++.|-.+..||++++..                    
T Consensus        92 kaiiwnlA~ss~--~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk  169 (1081)
T KOG0309|consen   92 KAIIWNLAKSSS--NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYK  169 (1081)
T ss_pred             hhhhhhhhcCCc--cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeeccc
Confidence            345677765322  33344577899999999999854 4788999999999999998654                    


Q ss_pred             ----cceecCCcEEEEeCCCCccee-eecccCcceeeEeee
Q psy1285          71 ----AANSKDQTIKLWDVRKFSNKT-AQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 ----~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~  106 (118)
                          ...+....|++||.|.+..+. .+..|-..+..++|+
T Consensus       170 ~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn  210 (1081)
T KOG0309|consen  170 DPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFN  210 (1081)
T ss_pred             CcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHh
Confidence                334556679999999987665 344555555555443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.51  E-value=0.0019  Score=45.32  Aligned_cols=52  Identities=15%  Similarity=-0.026  Sum_probs=38.1

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCC---CcEEEEecCCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKD---QTIKLWDVRKF   68 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~   68 (118)
                      ..|.+||...      .....+..+...+.+.+|+|+++.++..+.+   ..+.+||+...
T Consensus       184 ~~l~i~D~~g------~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g  238 (433)
T PRK04922        184 YALQVADSDG------YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG  238 (433)
T ss_pred             EEEEEECCCC------CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC
Confidence            4688898864      2233455577788999999999999877643   46889998654

>KOG3881|consensus

Probab=97.42  E-value=0.00027  Score=48.11  Aligned_cols=60  Identities=18%  Similarity=0.107  Sum_probs=50.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCce-eeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPV-GVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      ++-.-|.+..||.+.     +... ..+.+..+.+.++.-+|..+++++|+-|+.++|+|+.+...
T Consensus       264 ~gn~~g~l~~FD~r~-----~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  264 TGNTKGQLAKFDLRG-----GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             EecccchhheecccC-----ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence            555668889999987     4444 44788999999999999999999999999999999998443

>KOG4640|consensus

Probab=97.31  E-value=0.0018  Score=46.75  Aligned_cols=49  Identities=29%  Similarity=0.342  Sum_probs=39.4

Q ss_pred             ccCcEE-EEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----cceecCCcEEEEe
Q psy1285          35 HRDGIT-FIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----AANSKDQTIKLWD   83 (118)
Q Consensus        35 h~~~v~-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----~s~~~d~~i~iwd   83 (118)
                      |...+. +++|.|||+.++.|-.||+|++.|+..+..     .+...|-+-.+|+
T Consensus        60 p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   60 PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeecc
Confidence            444455 999999999999999999999999998654     4445566778886

>KOG1645|consensus

Probab=97.26  E-value=0.0066  Score=41.91  Aligned_cols=59  Identities=14%  Similarity=0.041  Sum_probs=48.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCC-CeEEEeeCCCcEEEEecCCCCc
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDS-RHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      .++.+.+|+|.|+.+     ...+..+..+ ..+++.+|..+. +++..|..+|.|.+||++.++.
T Consensus       211 ~asl~nkiki~dlet-----~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  211 LASLGNKIKIMDLET-----SCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             eeccCceEEEEeccc-----ceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence            677899999999987     6666677766 789999998755 4566888899999999998765

>KOG1334|consensus

Probab=97.26  E-value=0.0013  Score=46.16  Aligned_cols=41  Identities=20%  Similarity=0.235  Sum_probs=36.1

Q ss_pred             eeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285          29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus        29 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      ...+..|.+.|..+.|+..|..|++++.|..|.+||.....
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~  175 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS  175 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccC
Confidence            34567899999999999999999999999999999987543

>KOG1645|consensus

Probab=97.24  E-value=0.00074  Score=46.39  Aligned_cols=66  Identities=18%  Similarity=0.106  Sum_probs=52.7

Q ss_pred             CCceeeecCccCcEEEEEeCCCCC-eEEEeeCCCcEEEEecCCCCc-----------------------cceecCCcEEE
Q psy1285          26 AKPVGVLAGHRDGITFIDPKGDSR-HLISNSKDQTIKLWDVRKFNG-----------------------AANSKDQTIKL   81 (118)
Q Consensus        26 ~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~-----------------------~s~~~d~~i~i   81 (118)
                      ..+...+..+...|..++|+|..+ ++..++.+++|++.|+++...                       ..|-..|.|.|
T Consensus       183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEE
Confidence            444445667788999999999665 678899999999999987433                       56667899999


Q ss_pred             EeCCCCccee
Q psy1285          82 WDVRKFSNKT   91 (118)
Q Consensus        82 wd~~~~~~~~   91 (118)
                      ||.|.++.+.
T Consensus       263 yD~R~~~~~~  272 (463)
T KOG1645|consen  263 YDMRQPEGPL  272 (463)
T ss_pred             EEccCCCchH
Confidence            9999988765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.21  E-value=0.0023  Score=30.83  Aligned_cols=31  Identities=3%  Similarity=0.085  Sum_probs=28.0

Q ss_pred             cCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285          36 RDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus        36 ~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      ...|.+++|+|...++|.+..+|.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4568999999999999999999999999883

>KOG1064|consensus

Probab=97.16  E-value=0.00059  Score=54.50  Aligned_cols=56  Identities=9%  Similarity=0.079  Sum_probs=42.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeec-CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLA-GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      |.+.||.+++|.-..     ++.+..++ +=...|..+.|+.+|+.+..+..||.+.+|...
T Consensus      2225 tgs~dgsv~~~~w~~-----~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGH-----GQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             ecCCCceEEEEeccC-----CCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence            889999999998765     34443333 122677888888888888888888888888765

>KOG1008|consensus

Probab=97.14  E-value=0.00022  Score=51.53  Aligned_cols=102  Identities=16%  Similarity=0.265  Sum_probs=66.5

Q ss_pred             CceEEEEeCCCCCCCCCCceeeec-CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLA-GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      |..+.|||+...-. .+..-..+. +......+++|-.+.+.+.+|...+.++++|+|....                  
T Consensus       128 ds~~~Iwdi~s~lt-vPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~  206 (783)
T KOG1008|consen  128 DSSLKIWDINSLLT-VPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPF  206 (783)
T ss_pred             cCCccceecccccC-CCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCC
Confidence            56789999986311 111111122 2445566888887888999999999999999983211                  


Q ss_pred             ----cceecCCcEEEEe-CCCCcceeeecccC-----cceeeEeeeeecccC
Q psy1285          71 ----AANSKDQTIKLWD-VRKFSNKTAQRNTF-----RAVCEQNWEYRRENV  112 (118)
Q Consensus        71 ----~s~~~d~~i~iwd-~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~  112 (118)
                          .+...|+.|.+|| .++-+.+.....+.     ..+..++|.+.+...
T Consensus       207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl  258 (783)
T KOG1008|consen  207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL  258 (783)
T ss_pred             CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence                4556699999999 66655443322222     238888898887554

>KOG1963|consensus

Probab=97.12  E-value=0.0039  Score=46.27  Aligned_cols=64  Identities=17%  Similarity=0.261  Sum_probs=49.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      .+..||+|.+|.--.. .........++=|...|.++.|+++|.+|.+|+..+.+-+|.+.+...
T Consensus       222 a~d~dGrI~vw~d~~~-~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k  285 (792)
T KOG1963|consen  222 AGDSDGRILVWRDFGS-SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK  285 (792)
T ss_pred             EeccCCcEEEEecccc-ccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc
Confidence            4456899999986431 112333445666888999999999999999999999999999987544

>KOG2315|consensus

Probab=97.09  E-value=0.0038  Score=44.44  Aligned_cols=89  Identities=15%  Similarity=0.204  Sum_probs=59.0

Q ss_pred             eEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeC---CCcEEEEecCCCCc------------------
Q psy1285          12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSK---DQTIKLWDVRKFNG------------------   70 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~------------------   70 (118)
                      ++.|+|++      ..++..+.  +++=+++-|+|.|++++.++-   -|.|.+||+.+...                  
T Consensus       295 kvtifnlr------~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdG  366 (566)
T KOG2315|consen  295 KVTIFNLR------GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDG  366 (566)
T ss_pred             eEEEEcCC------CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCC
Confidence            56677776      46665554  455578999999999887765   47899999987543                  


Q ss_pred             -----ccee----cCCcEEEEeCCCCcceeeecccCcceeeEeeeeecc
Q psy1285          71 -----AANS----KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 -----~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                           ++.+    -|..++||++............  ....+.|.+...
T Consensus       367 e~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~s--EL~qv~W~P~~~  413 (566)
T KOG2315|consen  367 EYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKS--ELLQVEWRPFND  413 (566)
T ss_pred             cEEEEEeccccEEecCCeEEEEecCceeehhhhhH--hHhheeeeecCC
Confidence                 3333    3888999998754433322111  466777775444

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.07  E-value=0.018  Score=40.48  Aligned_cols=90  Identities=12%  Similarity=-0.047  Sum_probs=54.5

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeC---CCcEEEEecCCCCc-----------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSK---DQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~-----------------   70 (118)
                      ..|.++|...     ..+ ..+..+...+...+|+|||+.|+..+.   +..+.+||+.....                 
T Consensus       179 ~~l~~~d~dg-----~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP  252 (429)
T PRK03629        179 YELRVSDYDG-----YNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP  252 (429)
T ss_pred             eeEEEEcCCC-----CCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence            3688888764     232 334446678899999999999886542   35688888865422                 


Q ss_pred             ------cceecCC--cEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 ------AANSKDQ--TIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ------~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                            .+.+.++  .|.+||+.++... .+......+....|++
T Consensus       253 DG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSP  296 (429)
T PRK03629        253 DGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFP  296 (429)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECC
Confidence                  2223333  5888898876543 2322223344555554

>KOG1354|consensus

Probab=96.99  E-value=0.0035  Score=42.50  Aligned_cols=53  Identities=28%  Similarity=0.474  Sum_probs=42.2

Q ss_pred             cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------------------------cceecCCcEE
Q psy1285          33 AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------------------------AANSKDQTIK   80 (118)
Q Consensus        33 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------------------------~s~~~d~~i~   80 (118)
                      .+|.-.|+++.++.|+..++++ .|-.|.+|++.-...                                +-.++.|+|+
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            3677789999999998888876 578899999874332                                4457789999


Q ss_pred             EEeCCC
Q psy1285          81 LWDVRK   86 (118)
Q Consensus        81 iwd~~~   86 (118)
                      +-|+|.
T Consensus       240 LcDmR~  245 (433)
T KOG1354|consen  240 LCDMRQ  245 (433)
T ss_pred             Eeechh
Confidence            999993

>PRK05137 tolB translocation protein TolB; Provisional

Probab=96.94  E-value=0.016  Score=40.74  Aligned_cols=54  Identities=17%  Similarity=0.116  Sum_probs=36.4

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEE-EeeCCCc--EEEEecCCC
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLI-SNSKDQT--IKLWDVRKF   68 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~   68 (118)
                      .+..|.+||+..     +.. ..+..+.+.+...+|+|+|+.|+ +.+.++.  |.+||+.+.
T Consensus       224 g~~~i~~~dl~~-----g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~  280 (435)
T PRK05137        224 GRPRVYLLDLET-----GQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG  280 (435)
T ss_pred             CCCEEEEEECCC-----CcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC
Confidence            456889999875     332 23444666777889999998875 5555555  666677643

>KOG4190|consensus

Probab=96.91  E-value=0.00054  Score=49.09  Aligned_cols=63  Identities=30%  Similarity=0.437  Sum_probs=49.0

Q ss_pred             eeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC-c---------------------------cceecCCcEE
Q psy1285          29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN-G---------------------------AANSKDQTIK   80 (118)
Q Consensus        29 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~---------------------------~s~~~d~~i~   80 (118)
                      +..+.+|+..|..+.--.+.+-+++++.|++|++|.++..- .                           ..++.|+-|+
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH  807 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH  807 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence            34567899888888776667788999999999999987421 1                           4467799999


Q ss_pred             EEeCCCCccee
Q psy1285          81 LWDVRKFSNKT   91 (118)
Q Consensus        81 iwd~~~~~~~~   91 (118)
                      +||.--+++..
T Consensus       808 lWDPFigr~La  818 (1034)
T KOG4190|consen  808 LWDPFIGRLLA  818 (1034)
T ss_pred             eecccccchhH
Confidence            99987666654

>KOG4532|consensus

Probab=96.90  E-value=0.019  Score=37.97  Aligned_cols=62  Identities=15%  Similarity=0.086  Sum_probs=42.8

Q ss_pred             cccccCceEEEEeCCCCCCCCCCcee-eecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVG-VLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      ..++....|..|.+...   ...... ....-.+.-++..|+.....+|++..||++.+||+|...
T Consensus       174 ~~Vgds~~Vf~y~id~~---sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  174 SSVGDSRRVFRYAIDDE---SEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             EEecCCCcceEEEeCCc---cceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence            35666677777877642   122222 222234445788899888899999999999999999754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=96.87  E-value=0.045  Score=37.88  Aligned_cols=59  Identities=17%  Similarity=0.067  Sum_probs=43.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEee-CCCcEEEEecCCCCc
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNS-KDQTIKLWDVRKFNG   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~   70 (118)
                      .++.||.|.++|+.+     .+.+.++.. .....++++++||++++++. ..+.+.++|.++.+.
T Consensus        53 v~~rdg~vsviD~~~-----~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~  112 (369)
T PF02239_consen   53 VANRDGTVSVIDLAT-----GKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP  112 (369)
T ss_dssp             EEETTSEEEEEETTS-----SSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E
T ss_pred             EEcCCCeEEEEECCc-----ccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccc
Confidence            356789999999987     677777763 44568899999999988665 589999999887644

...

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.84  E-value=0.015  Score=39.12  Aligned_cols=57  Identities=12%  Similarity=0.142  Sum_probs=40.0

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEee-CCCcEEEEecC
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNS-KDQTIKLWDVR   66 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~wd~~   66 (118)
                      .+.|+.|++||+...  .....+..+. +.+....+.++|++++|.+++ .++.|.+|++.
T Consensus         8 ~~~~~~I~~~~~~~~--g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~   65 (330)
T PRK11028          8 SPESQQIHVWNLNHE--GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA   65 (330)
T ss_pred             cCCCCCEEEEEECCC--CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence            356899999999631  1123444444 345677899999999886654 57889999886

>KOG1912|consensus

Probab=96.81  E-value=0.015  Score=43.45  Aligned_cols=90  Identities=16%  Similarity=0.048  Sum_probs=63.6

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCC------------CeEEEeeCCCcEEEEecCCCCc------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDS------------RHLISNSKDQTIKLWDVRKFNG------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~s~~~d~~i~~wd~~~~~~------   70 (118)
                      ...-|.+-|.++     .+.++.+..|+..|..++|.|..            -.+|++...|.|.+||+.....      
T Consensus        33 shslV~VVDs~s-----~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~  107 (1062)
T KOG1912|consen   33 SHSLVSVVDSRS-----LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH  107 (1062)
T ss_pred             cCceEEEEehhh-----hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC
Confidence            344567778876     67888888899999999997521            1356777789999999875322      


Q ss_pred             ---------------------cceecCCcEEEEeCCCCcceeeecccCcceeeE
Q psy1285          71 ---------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQ  103 (118)
Q Consensus        71 ---------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  103 (118)
                                           +.-....++.+|+..++....+.........++
T Consensus       108 ~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f  161 (1062)
T KOG1912|consen  108 SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCF  161 (1062)
T ss_pred             CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeee
Confidence                                 222335789999999999887766444444433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=96.75  E-value=0.025  Score=39.75  Aligned_cols=73  Identities=16%  Similarity=0.040  Sum_probs=43.9

Q ss_pred             ccCcEEEEEeCCCCCeEEEeeCC---CcEEEEecCCCCc---------------------cceecCC---cEEEEeCCCC
Q psy1285          35 HRDGITFIDPKGDSRHLISNSKD---QTIKLWDVRKFNG---------------------AANSKDQ---TIKLWDVRKF   87 (118)
Q Consensus        35 h~~~v~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~---------------------~s~~~d~---~i~iwd~~~~   87 (118)
                      .........|+|+|+.++..+.+   ..+.+||+.+...                     +.++.++   .+.++++ .+
T Consensus       329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G  407 (429)
T PRK03629        329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DG  407 (429)
T ss_pred             CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CC
Confidence            33445678899999998765543   3477888765432                     2233332   2555565 34


Q ss_pred             cceeeecccCcceeeEeeeee
Q psy1285          88 SNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        88 ~~~~~~~~~~~~v~~~~~~~~  108 (118)
                      .....+..+...+....|++.
T Consensus       408 ~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        408 RFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCeEECccCCCCcCCcccCCC
Confidence            444555556666777788754

>KOG4547|consensus

Probab=96.75  E-value=0.0066  Score=43.34  Aligned_cols=58  Identities=12%  Similarity=0.130  Sum_probs=50.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      ++++|+++-.|+...     ......+.+.+..+.+++++||+..|++++  +.|++||+.+...
T Consensus       119 S~~ad~~v~~~~~~~-----~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev  176 (541)
T KOG4547|consen  119 SVGADLKVVYILEKE-----KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV  176 (541)
T ss_pred             ecCCceeEEEEeccc-----ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceE
Confidence            788999999999987     677778888888899999999999998876  7899999987543

>KOG1334|consensus

Probab=96.72  E-value=0.00078  Score=47.27  Aligned_cols=58  Identities=21%  Similarity=0.461  Sum_probs=49.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      ..|.-|.|+||+-..     .+.++.+.+-..-|+||.=+|--..||+.+-|..||||-....
T Consensus       411 SGSDCGhIFiW~K~t-----~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  411 SGSDCGHIFIWDKKT-----GEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             ecCccceEEEEecch-----hHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            455669999999987     7888878876778999999998899999999999999987543

>KOG1538|consensus

Probab=96.69  E-value=0.015  Score=42.97  Aligned_cols=55  Identities=16%  Similarity=0.187  Sum_probs=46.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      -.++|+.+.+|...      +..+.+.......|+.+...|++..++.|+.||+|..|++-
T Consensus       239 iGGsdk~L~~fTR~------GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  239 LGGSDKQLSLFTRD------GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EccCCCceEEEeec------CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            45778899998876      56666777778899999999999999999999999999874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.59  E-value=0.038  Score=37.18  Aligned_cols=57  Identities=5%  Similarity=0.075  Sum_probs=36.5

Q ss_pred             cCceEEEEeCCCCCCCCCC--ceeeecCccCcEEEEEeCCCCCeEEEeeC-CCcEEEEecC
Q psy1285           9 SLVTCFVWDRRTLNETTAK--PVGVLAGHRDGITFIDPKGDSRHLISNSK-DQTIKLWDVR   66 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~~wd~~   66 (118)
                      .++.|.+||+.....-...  ...... .......+.|+|+++++.+... +++|.+|++.
T Consensus       146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        146 KEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            4689999999752100000  001111 1234568899999999877765 8999999986

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.55  E-value=0.012  Score=42.21  Aligned_cols=54  Identities=15%  Similarity=0.042  Sum_probs=40.9

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      .-.||.|.+||....      ... +....=....++|+|+|..+++|+..|.+.+||..-
T Consensus       277 GC~DgSiiLyD~~~~------~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  277 GCEDGSIILYDTTRG------VTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EecCCeEEEEEcCCC------eee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            346999999999752      111 112233467899999999999999999999999853

>KOG2315|consensus

Probab=96.48  E-value=0.045  Score=39.30  Aligned_cols=72  Identities=10%  Similarity=0.124  Sum_probs=51.0

Q ss_pred             ccCcEEEEEeCCCCCeEEEee--CCCcEEEEecCCCCc---------------------cc--eecCCcEEEEeCCCCcc
Q psy1285          35 HRDGITFIDPKGDSRHLISNS--KDQTIKLWDVRKFNG---------------------AA--NSKDQTIKLWDVRKFSN   89 (118)
Q Consensus        35 h~~~v~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~---------------------~s--~~~d~~i~iwd~~~~~~   89 (118)
                      -.++|+++.|+++++.++.+.  .--++.+||++....                     ++  |.-.|.+-|||+.+.++
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~  348 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL  348 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence            368999999999999887654  346788888774221                     22  33468999999999888


Q ss_pred             eeeecccCcceeeEeeeee
Q psy1285          90 KTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        90 ~~~~~~~~~~v~~~~~~~~  108 (118)
                      +..+.....  +-++|++.
T Consensus       349 i~~~~a~~t--t~~eW~Pd  365 (566)
T KOG2315|consen  349 IAKFKAANT--TVFEWSPD  365 (566)
T ss_pred             ccccccCCc--eEEEEcCC
Confidence            877765443  45557653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=96.46  E-value=0.037  Score=38.86  Aligned_cols=50  Identities=22%  Similarity=0.245  Sum_probs=33.1

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEE-EeeCCCcEEEEec
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLI-SNSKDQTIKLWDV   65 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~~wd~   65 (118)
                      ...|.+||+..     ++.. .+....+......|+|||+.++ +.+.++...+|.+
T Consensus       219 ~~~I~~~dl~~-----g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        219 KPVVYVHDLAT-----GRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             CcEEEEEECCC-----CCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            35688889875     3322 2333445566889999999876 5667777666654

>KOG4497|consensus

Probab=96.44  E-value=0.011  Score=40.13  Aligned_cols=51  Identities=20%  Similarity=0.143  Sum_probs=35.2

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      +..+-+||-..     ...+. .....-.+..+.|+|.++.|+.|++|+.+++.+--
T Consensus       190 g~~laVwd~~L-----eykv~-aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  190 GNWLAVWDNVL-----EYKVY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             CcEEEEecchh-----hheee-eeeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence            34667788653     22221 22233468899999999999999999988876643

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.40  E-value=0.073  Score=37.53  Aligned_cols=37  Identities=14%  Similarity=0.037  Sum_probs=25.9

Q ss_pred             ecCccCcEEEEEeCCCCCeEEEeeCC---CcEEEEecCCC
Q psy1285          32 LAGHRDGITFIDPKGDSRHLISNSKD---QTIKLWDVRKF   68 (118)
Q Consensus        32 ~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~   68 (118)
                      +..+...+....|+|||+.|+..+.+   ..|.+||+.+.
T Consensus       322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g  361 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG  361 (428)
T ss_pred             eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            33344556788999999988866543   36888888654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.37  E-value=0.087  Score=36.53  Aligned_cols=52  Identities=19%  Similarity=0.030  Sum_probs=36.0

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCC---CcEEEEecCCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKD---QTIKLWDVRKF   68 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~   68 (118)
                      ..|.++|...     .. ...+..+...+...+|+|+|+.|+....+   ..|.+||+.+.
T Consensus       170 ~~l~~~d~~g-----~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g  224 (417)
T TIGR02800       170 YELQVADYDG-----AN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG  224 (417)
T ss_pred             ceEEEEcCCC-----CC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            3566677653     22 33444566678899999999998876543   47999998764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=96.36  E-value=0.1  Score=36.58  Aligned_cols=51  Identities=18%  Similarity=0.004  Sum_probs=35.2

Q ss_pred             eEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCC---CcEEEEecCCC
Q psy1285          12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKD---QTIKLWDVRKF   68 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~   68 (118)
                      .|.++|...     .. ...+..+...+....|+|+|+.|+..+.+   ..|.+||+.+.
T Consensus       180 ~l~~~d~~g-----~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g  233 (430)
T PRK00178        180 TLQRSDYDG-----AR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG  233 (430)
T ss_pred             EEEEECCCC-----CC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC
Confidence            466667664     23 33445567788999999999998876543   35888888654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.31  E-value=0.12  Score=35.92  Aligned_cols=52  Identities=23%  Similarity=0.079  Sum_probs=33.6

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEE-EeeCCC--cEEEEecCCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLI-SNSKDQ--TIKLWDVRKF   68 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~--~i~~wd~~~~   68 (118)
                      ..|.+||+..     .... .+..+.+.+.+.+|+|+++.|+ +.+.++  .|.+||+.+.
T Consensus       214 ~~i~v~d~~~-----g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~  268 (417)
T TIGR02800       214 PEIYVQDLAT-----GQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK  268 (417)
T ss_pred             cEEEEEECCC-----CCEE-EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC
Confidence            5788899875     2222 2333555667789999998776 444443  5888887653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.23  E-value=0.011  Score=39.90  Aligned_cols=62  Identities=19%  Similarity=0.171  Sum_probs=41.0

Q ss_pred             cccCceEEEEeCCCCC-CCCCCcee----------eecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285           7 VASLVTCFVWDRRTLN-ETTAKPVG----------VLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~-~~~~~~~~----------~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      -++.|.|++-|+++.. +...+.+.          .+.+-.+.|..+.|+++|+++++.+. .++++||++...
T Consensus       240 SsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k  312 (460)
T COG5170         240 SSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK  312 (460)
T ss_pred             ecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence            4567999999998521 11111111          12222357889999999999998754 489999998643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=96.13  E-value=0.077  Score=37.34  Aligned_cols=31  Identities=10%  Similarity=-0.025  Sum_probs=22.5

Q ss_pred             cEEEEEeCCCCCeEEEeeCCC---cEEEEecCCC
Q psy1285          38 GITFIDPKGDSRHLISNSKDQ---TIKLWDVRKF   68 (118)
Q Consensus        38 ~v~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~   68 (118)
                      .....+|+|+|+.++..+.++   .|.+||+.+.
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g  370 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG  370 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence            344689999999988654432   5889998654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.06  E-value=0.16  Score=36.09  Aligned_cols=51  Identities=16%  Similarity=0.047  Sum_probs=33.3

Q ss_pred             eEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeC-CC--cEEEEecCCC
Q psy1285          12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSK-DQ--TIKLWDVRKF   68 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~   68 (118)
                      .+.++|...     ... ..+......+.+..|+|||+.|+..+. ++  .|.++|+.+.
T Consensus       199 ~l~i~d~dG-----~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg  252 (448)
T PRK04792        199 QLMIADYDG-----YNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ  252 (448)
T ss_pred             EEEEEeCCC-----CCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC
Confidence            566667654     222 334446677889999999998886543 33  4777887643

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.94  E-value=0.052  Score=25.60  Aligned_cols=31  Identities=10%  Similarity=0.123  Sum_probs=22.2

Q ss_pred             CcEEEEEeCCCC---CeEEEeeCCCcEEEEecCC
Q psy1285          37 DGITFIDPKGDS---RHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus        37 ~~v~~~~~~~~~---~~l~s~~~d~~i~~wd~~~   67 (118)
                      +.+.+++|+|+.   .+|+-.-.-+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            457899999854   3666655567788888874

It contains a characteristic DLL sequence motif.

>KOG2079|consensus

Probab=95.88  E-value=0.038  Score=42.68  Aligned_cols=58  Identities=16%  Similarity=0.174  Sum_probs=41.1

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      +.|++-..|.+..    -.+.+.-..-.++|.+++|+.+|+.++.|-.+|.|.+||..+...
T Consensus       107 s~ghvl~~d~~~n----L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~  164 (1206)
T KOG2079|consen  107 SHGHVLLSDMTGN----LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI  164 (1206)
T ss_pred             Cchhhhhhhhhcc----cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc
Confidence            3455555565531    122222223467899999999999999999999999999988554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=95.85  E-value=0.21  Score=35.77  Aligned_cols=72  Identities=15%  Similarity=0.160  Sum_probs=51.1

Q ss_pred             eEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------------
Q psy1285          12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------------   70 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------------   70 (118)
                      .+-|+|...      -....+..-.+.|..+..+++|..++.+.....+.+.|+.+...                     
T Consensus       383 ~l~iyd~~~------~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr  456 (668)
T COG4946         383 KLGIYDKDG------GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR  456 (668)
T ss_pred             eEEEEecCC------ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence            555666653      23344555678899999999999998888777888888887654                     


Q ss_pred             ------cceecCCcEEEEeCCCCcc
Q psy1285          71 ------AANSKDQTIKLWDVRKFSN   89 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~   89 (118)
                            -.|-....|++||...++.
T Consensus       457 ~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         457 WIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             eEEEecCcceeeeeEEEEecCCCeE
Confidence                  2233455788888877554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=95.81  E-value=0.029  Score=37.05  Aligned_cols=35  Identities=20%  Similarity=0.385  Sum_probs=31.3

Q ss_pred             ccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285          35 HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus        35 h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      ..+.|..+..||||..|++...+|.+.+|++.+..
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            35679999999999999999999999999998865

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.31  E-value=0.26  Score=28.22  Aligned_cols=66  Identities=15%  Similarity=0.249  Sum_probs=43.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCccceecCCcEEEEeCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLWDVR   85 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~s~~~d~~i~iwd~~   85 (118)
                      -++.|..||+|+-.       +.+.++.. .+.|.++.-... ..++.+..+|+|-+|            ++..|+|.++
T Consensus        20 vGs~D~~IRvf~~~-------e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY------------~~~~RlWRiK   78 (111)
T PF14783_consen   20 VGSDDFEIRVFKGD-------EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVY------------DRSQRLWRIK   78 (111)
T ss_pred             EecCCcEEEEEeCC-------cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEE------------eCcceeeeec
Confidence            45678888888764       44445543 445666666544 567888888887776            4567888887


Q ss_pred             CCcceee
Q psy1285          86 KFSNKTA   92 (118)
Q Consensus        86 ~~~~~~~   92 (118)
                      +...+..
T Consensus        79 SK~~~~~   85 (111)
T PF14783_consen   79 SKNQVTS   85 (111)
T ss_pred             cCCCeEE
Confidence            7665543

>KOG2041|consensus

Probab=95.15  E-value=0.08  Score=39.67  Aligned_cols=62  Identities=15%  Similarity=0.122  Sum_probs=47.1

Q ss_pred             ccccCceEEEEeCCCCCC----------CCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285           6 QVASLVTCFVWDRRTLNE----------TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      -++.||.+++-.+.+...          .+-..-+++.+|.+.|.-+.|+.+...|.+...+|.|.+|-+-.
T Consensus        31 cgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlyk  102 (1189)
T KOG2041|consen   31 CGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYK  102 (1189)
T ss_pred             eccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeec
Confidence            467789888877654111          11123357889999999999998888889999999999998764

>KOG1832|consensus

Probab=95.12  E-value=0.064  Score=41.14  Aligned_cols=44  Identities=20%  Similarity=0.223  Sum_probs=37.5

Q ss_pred             CCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285          26 AKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus        26 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      ..+...++.|.....|++|+...++|+.|+..|.|+++++.++.
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~ 1134 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS 1134 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc
Confidence            34555677788889999999999999999999999999998754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=94.95  E-value=0.36  Score=38.07  Aligned_cols=51  Identities=18%  Similarity=0.127  Sum_probs=38.8

Q ss_pred             EEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------------------------cceecCCcEEEE
Q psy1285          39 ITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------------------------AANSKDQTIKLW   82 (118)
Q Consensus        39 v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------------------------~s~~~d~~i~iw   82 (118)
                      ..+++++++|+.+++-..+++|++||..+...                                    ++-+.++.|++|
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence            45888999999888888899999999853210                                    344557789999


Q ss_pred             eCCCCcc
Q psy1285          83 DVRKFSN   89 (118)
Q Consensus        83 d~~~~~~   89 (118)
                      |+.+...
T Consensus       886 d~~~~~~  892 (1057)
T PLN02919        886 DLNKGEA  892 (1057)
T ss_pred             ECCCCcc
Confidence            9987754

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=94.85  E-value=0.38  Score=27.60  Aligned_cols=69  Identities=14%  Similarity=0.165  Sum_probs=44.0

Q ss_pred             EEEEEeC---CCC-CeEEEeeCCCcEEEEecCCCCc-------------------cceecCCcEEEEeCCCCcceeeecc
Q psy1285          39 ITFIDPK---GDS-RHLISNSKDQTIKLWDVRKFNG-------------------AANSKDQTIKLWDVRKFSNKTAQRN   95 (118)
Q Consensus        39 v~~~~~~---~~~-~~l~s~~~d~~i~~wd~~~~~~-------------------~s~~~d~~i~iwd~~~~~~~~~~~~   95 (118)
                      |.++++.   .+| +.|+.|+.|..|++|+-.....                   +.+-.+|+|-+|+-  .........
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKS   79 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKS   79 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeecc
Confidence            4555553   333 5789999999999997654211                   56677899999976  334455554


Q ss_pred             cCcceeeEeeeeec
Q psy1285          96 TFRAVCEQNWEYRR  109 (118)
Q Consensus        96 ~~~~v~~~~~~~~~  109 (118)
                      ...++.-..++...
T Consensus        80 K~~~~~~~~~D~~g   93 (111)
T PF14783_consen   80 KNQVTSMAFYDING   93 (111)
T ss_pred             CCCeEEEEEEcCCC
Confidence            44445555555554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=94.81  E-value=0.22  Score=33.04  Aligned_cols=29  Identities=17%  Similarity=0.140  Sum_probs=26.4

Q ss_pred             EEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285          39 ITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus        39 v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      =..++||||+..||.+...|+|.+||+..
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g   74 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG   74 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence            45789999999999999999999999984

>PRK00178 tolB translocation protein TolB; Provisional

Probab=94.74  E-value=0.69  Score=32.45  Aligned_cols=52  Identities=19%  Similarity=0.068  Sum_probs=31.1

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEE-EeeCCC--cEEEEecCCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLI-SNSKDQ--TIKLWDVRKF   68 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~--~i~~wd~~~~   68 (118)
                      ..|.+||+..     +.. ..+....+.+....|+|+|+.|+ +...++  .|.++|+.+.
T Consensus       223 ~~l~~~~l~~-----g~~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~  277 (430)
T PRK00178        223 PRIFVQNLDT-----GRR-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR  277 (430)
T ss_pred             CEEEEEECCC-----CCE-EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            3566777764     222 12222334455689999999876 444444  5777787654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=94.54  E-value=0.085  Score=35.76  Aligned_cols=59  Identities=19%  Similarity=0.233  Sum_probs=39.7

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCcc-----CcEEEEEeCCC-CCeEEEeeCCCcEEEEecCCC
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHR-----DGITFIDPKGD-SRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      +.|-.|.+|.+..++  ...-+..++.|.     .-|.+..|+|. .+++.-.+..|.|++-|+|..
T Consensus       190 aDdLrINLWnl~i~D--~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         190 ADDLRINLWNLEIID--GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             ccceeeeeccccccC--CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence            446678889987632  122333344443     45778889985 456777788999999999953

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.53  E-value=0.79  Score=32.72  Aligned_cols=33  Identities=15%  Similarity=0.030  Sum_probs=19.2

Q ss_pred             ecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          74 SKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        74 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                      ..++.|.+||..+.+.+..+...  +|..+.|+..
T Consensus       123 ~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~  155 (443)
T PF04053_consen  123 KSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDD  155 (443)
T ss_dssp             EETTEEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred             ECCCCEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence            34457999999988888777633  3778888744

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.46  E-value=0.17  Score=38.44  Aligned_cols=54  Identities=20%  Similarity=0.228  Sum_probs=38.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEec
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV   65 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~   65 (118)
                      .++.+|.||+||...     ...-..+.+...+|.+|+.+.||+++++.+ +..+.|.+.
T Consensus       593 vgs~~G~IRLyd~~g-----~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  593 VGSNKGDIRLYDRLG-----KRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             EEeCCCcEEeecccc-----hhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            467789999999542     222223446778999999999999977654 445666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2066|consensus

Probab=94.38  E-value=0.39  Score=36.28  Aligned_cols=22  Identities=14%  Similarity=0.066  Sum_probs=15.8

Q ss_pred             CCCCeEEEeeCCCcEEEEecCC
Q psy1285          46 GDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus        46 ~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      .+|.++++|+.||+|.+-.+-+
T Consensus        81 ~~Gey~asCS~DGkv~I~sl~~  102 (846)
T KOG2066|consen   81 LEGEYVASCSDDGKVVIGSLFT  102 (846)
T ss_pred             cCCceEEEecCCCcEEEeeccC
Confidence            3577888888888777765544

>KOG0882|consensus

Probab=94.32  E-value=0.37  Score=34.28  Aligned_cols=84  Identities=11%  Similarity=0.006  Sum_probs=63.2

Q ss_pred             cccCceEEEEeCCCCCCCCCCce-eeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC-CC---c-----------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPV-GVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK-FN---G-----------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~---~-----------   70 (118)
                      ...++.+.++|-...    .++. ..-.-|..+|.++.++|.+....+....|.|..|.... +.   .           
T Consensus       118 ~~~sg~i~VvD~~~d----~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd  193 (558)
T KOG0882|consen  118 LFKSGKIFVVDGFGD----FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD  193 (558)
T ss_pred             cccCCCcEEECCcCC----cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccch
Confidence            345788888888752    3333 33346899999999999999989988889999998873 11   0           


Q ss_pred             -----------------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 -----------------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 -----------------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                                             .+-+.|.+|+++++++++....+.
T Consensus       194 Ly~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  194 LYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             hhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence                                   344579999999999998876543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=94.12  E-value=1.4  Score=31.82  Aligned_cols=75  Identities=9%  Similarity=0.233  Sum_probs=55.2

Q ss_pred             CccCcEEEEEeCCCCCeEEEeeCCC-cEEEEecCCCCc----------------------cceecCCcEEEEeCCCCcce
Q psy1285          34 GHRDGITFIDPKGDSRHLISNSKDQ-TIKLWDVRKFNG----------------------AANSKDQTIKLWDVRKFSNK   90 (118)
Q Consensus        34 ~h~~~v~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~----------------------~s~~~d~~i~iwd~~~~~~~   90 (118)
                      +|.+.|.-..+..++.-++.|..|| .+-++|......                      +.+.....|.+.|+.++...
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~  436 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR  436 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence            4677788888887777888888998 788999887542                      33333456778899888876


Q ss_pred             eeecccCcceeeEeeeee
Q psy1285          91 TAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        91 ~~~~~~~~~v~~~~~~~~  108 (118)
                      ..-....+-++..+|+++
T Consensus       437 ~idkS~~~lItdf~~~~n  454 (668)
T COG4946         437 LIDKSEYGLITDFDWHPN  454 (668)
T ss_pred             EecccccceeEEEEEcCC
Confidence            554556677888888764

>KOG1912|consensus

Probab=93.93  E-value=0.15  Score=38.52  Aligned_cols=94  Identities=15%  Similarity=0.164  Sum_probs=63.5

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEE---------EeeCCCcEEEEecCCCCc--------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLI---------SNSKDQTIKLWDVRKFNG--------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~---------s~~~d~~i~~wd~~~~~~--------   70 (118)
                      ...|+|-+.|+.+     ...-..+..|...|.++.|-...+++-         +++.-+.+.+-|++++..        
T Consensus       444 T~sGTV~vvdvst-----~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~  518 (1062)
T KOG1912|consen  444 TNSGTVDVVDVST-----NAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK  518 (1062)
T ss_pred             cCCceEEEEEecc-----hhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence            3569999999987     566667788999999999975544432         222335567778876533        


Q ss_pred             ------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 ------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 ------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                                        +..-.+.-+-+||+++.++.....-..-.++.++|+
T Consensus       519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWs  572 (1062)
T KOG1912|consen  519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWS  572 (1062)
T ss_pred             CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeec
Confidence                              222335556788888877766554333448999998

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.93  E-value=0.95  Score=32.05  Aligned_cols=39  Identities=15%  Similarity=-0.048  Sum_probs=31.2

Q ss_pred             eecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285          31 VLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus        31 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      .+......+.++..+|.+++.+....-|.|.|+|+.+..
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~  340 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI  340 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence            344455678899999999888887777999999998754

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=93.69  E-value=1.2  Score=34.14  Aligned_cols=90  Identities=20%  Similarity=0.123  Sum_probs=55.5

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCc-EEEEEeC----C-CCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDG-ITFIDPK----G-DSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~-v~~~~~~----~-~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      ....|.-.|+..     ++.+..+..+... |..++-.    + .......|-.++.+..||.|-...            
T Consensus       502 ~~~~ly~mDLe~-----GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~  576 (794)
T PF08553_consen  502 NPNKLYKMDLER-----GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS  576 (794)
T ss_pred             CCCceEEEecCC-----CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence            345566667765     7888888866543 4444321    1 123345667788899999885321            


Q ss_pred             ---------------cceecCCcEEEEeCCCCcceeeecccCcceeeE
Q psy1285          71 ---------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQ  103 (118)
Q Consensus        71 ---------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  103 (118)
                                     +.|+.+|.||+||--..+....+++...+|..+
T Consensus       577 ~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~i  624 (794)
T PF08553_consen  577 KNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGI  624 (794)
T ss_pred             CCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEE
Confidence                           788999999999943322222444556666644

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2041|consensus

Probab=93.52  E-value=0.36  Score=36.42  Aligned_cols=72  Identities=13%  Similarity=0.117  Sum_probs=49.1

Q ss_pred             cCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------------------------------c-ceecCC
Q psy1285          36 RDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------------------------------A-ANSKDQ   77 (118)
Q Consensus        36 ~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------------------------------~-s~~~d~   77 (118)
                      .....|+.|+.+..+++.|+.||.+++..+.+...                                     . +...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            34578999999889999999999999998764321                                     3 334578


Q ss_pred             cEEEEeCCCCcceeeec--ccCcceeeEeeee
Q psy1285          78 TIKLWDVRKFSNKTAQR--NTFRAVCEQNWEY  107 (118)
Q Consensus        78 ~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~  107 (118)
                      -|.+|-+-+++=...+.  ..++.|.++.|+.
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~  125 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL  125 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcC
Confidence            88899877665433332  2233455666653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=93.50  E-value=1.7  Score=29.92  Aligned_cols=79  Identities=10%  Similarity=-0.041  Sum_probs=46.9

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------   70 (118)
                      +.+|.+..+|...     ++..-... ... ....  ...+..+..++.||.+..+|..+...                 
T Consensus       248 ~~~g~l~a~d~~t-----G~~~W~~~-~~~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i  318 (377)
T TIGR03300       248 SYQGRVAALDLRS-----GRVLWKRD-ASS-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV  318 (377)
T ss_pred             EcCCEEEEEECCC-----CcEEEeec-cCC-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence            4567788888765     33322211 111 0111  11345666666777777777654321                 


Q ss_pred             -----cceecCCcEEEEeCCCCcceeeecc
Q psy1285          71 -----AANSKDQTIKLWDVRKFSNKTAQRN   95 (118)
Q Consensus        71 -----~s~~~d~~i~iwd~~~~~~~~~~~~   95 (118)
                           ..++.++.|.++|..+++....+..
T Consensus       319 ~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~  348 (377)
T TIGR03300       319 VGGYLVVGDFEGYLHWLSREDGSFVARLKT  348 (377)
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence                 5567889999999999988876653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=93.46  E-value=1.4  Score=31.44  Aligned_cols=29  Identities=17%  Similarity=0.044  Sum_probs=18.5

Q ss_pred             EEEEeCCCCCeEEEeeC-CCc--EEEEecCCC
Q psy1285          40 TFIDPKGDSRHLISNSK-DQT--IKLWDVRKF   68 (118)
Q Consensus        40 ~~~~~~~~~~~l~s~~~-d~~--i~~wd~~~~   68 (118)
                      ....|+|+|+.++..+. ++.  |.++|+.+.
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            35689999998876544 343  445666543

>PRK02888 nitrous-oxide reductase; Validated

Probab=93.25  E-value=1.1  Score=33.35  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=38.7

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEE-eeCCCcEEEEecCCCC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLIS-NSKDQTIKLWDVRKFN   69 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~   69 (118)
                      +++|.+.|.+............+. -......+.++|||+++.. +..+.++.+.|+....
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            456888887651100123333333 3455688999999998765 4558999999998743

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=93.07  E-value=1.1  Score=28.49  Aligned_cols=78  Identities=15%  Similarity=-0.008  Sum_probs=49.6

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecC-c-cCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAG-H-RDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~-h-~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------   70 (118)
                      +|+|..+|.+.     ++.+-...- . .....+. ..+++..+.+++.++.+..||..++..                 
T Consensus         2 ~g~l~~~d~~t-----G~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRT-----GKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVD   75 (238)
T ss_dssp             TSEEEEEETTT-----TEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEE
T ss_pred             CCEEEEEECCC-----CCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeec
Confidence            68899999976     444433321 0 1111111 222455666667888888888866543                 


Q ss_pred             ----cceecCCcEEEEeCCCCcceeee
Q psy1285          71 ----AANSKDQTIKLWDVRKFSNKTAQ   93 (118)
Q Consensus        71 ----~s~~~d~~i~iwd~~~~~~~~~~   93 (118)
                          +.++.++.+..+|.++++.....
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~  102 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSI  102 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred             ccccccccceeeeEecccCCcceeeee
Confidence                44556789999999999988763

...

>KOG1275|consensus

Probab=93.04  E-value=0.33  Score=37.39  Aligned_cols=54  Identities=22%  Similarity=0.383  Sum_probs=39.9

Q ss_pred             cEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------------cce---------ecCCcEEEEeCCCC
Q psy1285          38 GITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------------AAN---------SKDQTIKLWDVRKF   87 (118)
Q Consensus        38 ~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------------~s~---------~~d~~i~iwd~~~~   87 (118)
                      .|.-++.  +++.+.+|...|+|.+-|.++++.                     +++         .-|..|+|||+|+.
T Consensus       179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm  256 (1118)
T KOG1275|consen  179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM  256 (1118)
T ss_pred             ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhh
Confidence            3554544  478999999999999999988654                     222         34778999999998


Q ss_pred             cceeee
Q psy1285          88 SNKTAQ   93 (118)
Q Consensus        88 ~~~~~~   93 (118)
                      +.+..+
T Consensus       257 ral~PI  262 (1118)
T KOG1275|consen  257 RALSPI  262 (1118)
T ss_pred             hccCCc
Confidence            876543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=92.67  E-value=0.67  Score=36.65  Aligned_cols=57  Identities=12%  Similarity=0.093  Sum_probs=39.9

Q ss_pred             ccCceEEEEeCCCCCCCCCCceee-------------ecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGV-------------LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~-------------~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      +.++.|++||....     .....             ..+.......++++++|+.+++-+.++.|++||+.+..
T Consensus       822 s~N~rIrviD~~tg-----~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        822 SYNHKIKKLDPATK-----RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CCCCEEEEEECCCC-----eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            34678899998642     11110             11223456789999999988888899999999997653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=92.34  E-value=2  Score=30.44  Aligned_cols=21  Identities=10%  Similarity=-0.140  Sum_probs=14.8

Q ss_pred             ccCcEEEEEeCCCCCeEEEee
Q psy1285          35 HRDGITFIDPKGDSRHLISNS   55 (118)
Q Consensus        35 h~~~v~~~~~~~~~~~l~s~~   55 (118)
                      ..+.....+|+|||+.|+..+
T Consensus       229 ~~g~~~~p~wSPDG~~Laf~s  249 (428)
T PRK01029        229 LQGNQLMPTFSPRKKLLAFIS  249 (428)
T ss_pred             CCCCccceEECCCCCEEEEEE
Confidence            344455688999998887544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=92.34  E-value=1.5  Score=30.41  Aligned_cols=52  Identities=25%  Similarity=0.274  Sum_probs=35.5

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCC-eEEEee-CCCcEEEEecCCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSR-HLISNS-KDQTIKLWDVRKF   68 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~-~d~~i~~wd~~~~   68 (118)
                      +.|-++|..+     .+.+..+. -...+..+.++||++ +|.+.. .++.|.+.|..+.
T Consensus       279 ~~V~ViD~~t-----~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       279 RFLFVVDAKT-----GKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             CEEEEEECCC-----CeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            5788888876     66666665 245788999999998 666544 3555666665544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3617|consensus

Probab=92.24  E-value=0.59  Score=36.08  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=30.9

Q ss_pred             cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285          33 AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus        33 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      ..|..+|..+.||++|..++++..-|.+.+|...
T Consensus        98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            3588999999999999999999999999999775

>KOG2066|consensus

Probab=92.06  E-value=1.1  Score=34.12  Aligned_cols=52  Identities=13%  Similarity=0.094  Sum_probs=37.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC-----CCeEEEeeCCCcEEEEe
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD-----SRHLISNSKDQTIKLWD   64 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~s~~~d~~i~~wd   64 (118)
                      ++|.||+|.|-.+-+     ......+. ...++.+++++|+     .+++++|+.-| +-++.
T Consensus        88 sCS~DGkv~I~sl~~-----~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e  144 (846)
T KOG2066|consen   88 SCSDDGKVVIGSLFT-----DDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE  144 (846)
T ss_pred             EecCCCcEEEeeccC-----CccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence            788899998877765     33333333 5678899999986     56788888887 55543

>KOG2395|consensus

Probab=92.01  E-value=1.3  Score=32.39  Aligned_cols=77  Identities=22%  Similarity=0.138  Sum_probs=48.5

Q ss_pred             CCceeeecCccCcEEEEEeCCCCC--e-----EEEeeCCCcEEEEecCCCCc----------------------------
Q psy1285          26 AKPVGVLAGHRDGITFIDPKGDSR--H-----LISNSKDQTIKLWDVRKFNG----------------------------   70 (118)
Q Consensus        26 ~~~~~~~~~h~~~v~~~~~~~~~~--~-----l~s~~~d~~i~~wd~~~~~~----------------------------   70 (118)
                      ++.+.++.-+.. |.-+.+.|+..  .     -+.|-.|+.|+-||.|-...                            
T Consensus       366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~I  444 (644)
T KOG2395|consen  366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYI  444 (644)
T ss_pred             ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceE
Confidence            666777764444 66666666432  2     23466788899999873211                            


Q ss_pred             cceecCCcEEEEeCCCCcceeeecccCcceeeE
Q psy1285          71 AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQ  103 (118)
Q Consensus        71 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  103 (118)
                      +.||.+|.||+||--.-.....+++...+|..+
T Consensus       445 vvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV  477 (644)
T KOG2395|consen  445 VVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV  477 (644)
T ss_pred             EEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence            778999999999983333333455666555543

>KOG2444|consensus

Probab=91.81  E-value=0.67  Score=30.04  Aligned_cols=78  Identities=14%  Similarity=0.119  Sum_probs=43.5

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeC-CCCCeEEEeeCCCcEEEEecCCCCc---------------c
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPK-GDSRHLISNSKDQTIKLWDVRKFNG---------------A   71 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~---------------~   71 (118)
                      +.+|.|.+|.....    ++.......-...+.+.--+ .++.+.++++.|+.|+.|++.-...               +
T Consensus        77 ~~dg~v~~~n~n~~----g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~i  152 (238)
T KOG2444|consen   77 TSDGAVYVFNWNLE----GAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELI  152 (238)
T ss_pred             cccceEEEecCCcc----chHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeE
Confidence            45778888777641    12111111112223332222 3566888999999999999875433               4


Q ss_pred             ceecCCcEEEEeCCCCcc
Q psy1285          72 ANSKDQTIKLWDVRKFSN   89 (118)
Q Consensus        72 s~~~d~~i~iwd~~~~~~   89 (118)
                      +.+.+..|.+|++.....
T Consensus       153 vv~sd~~i~~a~~S~d~~  170 (238)
T KOG2444|consen  153 VVGSDEFLKIADTSHDRV  170 (238)
T ss_pred             EecCCceEEeeccccchh
Confidence            445566677776554443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=91.73  E-value=3.2  Score=28.82  Aligned_cols=52  Identities=12%  Similarity=0.177  Sum_probs=36.0

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEee----------CCCcEEEEecCCCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNS----------KDQTIKLWDVRKFN   69 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~   69 (118)
                      ++|.+.|...     .+.+..+..=..+ ..+ ++||++.+..+.          .+..|.+||..+..
T Consensus        27 ~~v~ViD~~~-----~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~   88 (352)
T TIGR02658        27 TQVYTIDGEA-----GRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL   88 (352)
T ss_pred             ceEEEEECCC-----CEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence            7888889876     5666666522222 234 899998876554          47889999998754

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314|consensus

Probab=91.48  E-value=0.84  Score=33.43  Aligned_cols=33  Identities=27%  Similarity=0.502  Sum_probs=25.5

Q ss_pred             cEEEEEeCCCCCeEEEeeCC-----------CcEEEEecCCCCc
Q psy1285          38 GITFIDPKGDSRHLISNSKD-----------QTIKLWDVRKFNG   70 (118)
Q Consensus        38 ~v~~~~~~~~~~~l~s~~~d-----------~~i~~wd~~~~~~   70 (118)
                      .|.-+.|||..++|++-+..           ..++|||++++..
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l  294 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL  294 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch
Confidence            47889999999999986531           4688999887643

>KOG3621|consensus

Probab=91.37  E-value=0.87  Score=34.04  Aligned_cols=60  Identities=12%  Similarity=0.056  Sum_probs=42.7

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeec-CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLA-GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      ++.|.|-++.++......-..+.... .|...|.+++|++++..+.+|...|+|-+-.+..
T Consensus        95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            34588888888763221111222222 3778999999999999999999999988877665

>KOG2444|consensus

Probab=91.15  E-value=0.35  Score=31.32  Aligned_cols=57  Identities=21%  Similarity=0.223  Sum_probs=30.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCcc-CcEEEEEeCCCCCeEEEe--eCCCcEEEEecCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHR-DGITFIDPKGDSRHLISN--SKDQTIKLWDVRK   67 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~--~~d~~i~~wd~~~   67 (118)
                      +.+.||.+|.|++..     .+.+.....|. ..+..+..+..++.++..  |.|..++.|++..
T Consensus       119 ~~~~dg~ir~~n~~p-----~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  119 VGAQDGRIRACNIKP-----NKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             EeccCCceeeecccc-----CceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            567788888888875     44444444454 233333333334444444  4455555555543

>KOG4640|consensus

Probab=90.75  E-value=1.4  Score=32.64  Aligned_cols=71  Identities=20%  Similarity=0.236  Sum_probs=51.0

Q ss_pred             cCcEEEEEeCCCCCeEEEeeCCCcEE--------EEecCCCCc---------------cceecCCcEEEEeCCCCcceee
Q psy1285          36 RDGITFIDPKGDSRHLISNSKDQTIK--------LWDVRKFNG---------------AANSKDQTIKLWDVRKFSNKTA   92 (118)
Q Consensus        36 ~~~v~~~~~~~~~~~l~s~~~d~~i~--------~wd~~~~~~---------------~s~~~d~~i~iwd~~~~~~~~~   92 (118)
                      .-.+.-+.|+|.-..+|.+..+|.+.        +|++..+..               +.|=.||+|++-|+.++..+..
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            34567788888877888877777554        444441111               6677899999999999998877


Q ss_pred             ec-ccCcceeeEeee
Q psy1285          93 QR-NTFRAVCEQNWE  106 (118)
Q Consensus        93 ~~-~~~~~v~~~~~~  106 (118)
                      +. .-...+....|+
T Consensus       100 ~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  100 FLFSVETDISKGIWD  114 (665)
T ss_pred             cccccccchheeecc
Confidence            43 445678888886

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=89.47  E-value=4.3  Score=28.62  Aligned_cols=37  Identities=11%  Similarity=0.077  Sum_probs=22.2

Q ss_pred             cceecCCcEEEEeCCCCcceeeec--c------cCcceeeEeeee
Q psy1285          71 AANSKDQTIKLWDVRKFSNKTAQR--N------TFRAVCEQNWEY  107 (118)
Q Consensus        71 ~s~~~d~~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~~~  107 (118)
                      +.|..+|.+.|-|+|.+..+....  .      ....++.++|.+
T Consensus       101 aigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v  145 (395)
T PF08596_consen  101 AIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV  145 (395)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE
T ss_pred             EEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE
Confidence            556667888888888877665321  2      223566777763

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1008|consensus

Probab=89.41  E-value=0.31  Score=36.10  Aligned_cols=57  Identities=21%  Similarity=0.307  Sum_probs=36.6

Q ss_pred             ccCceEEEEe-CCCCCCCCCCceeeecCc----cCcEEEEEeCCC-CCeEEEeeCC-CcEEEEecCCC
Q psy1285           8 ASLVTCFVWD-RRTLNETTAKPVGVLAGH----RDGITFIDPKGD-SRHLISNSKD-QTIKLWDVRKF   68 (118)
Q Consensus         8 ~~dg~v~iwd-~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~-~~~l~s~~~d-~~i~~wd~~~~   68 (118)
                      ..||.+-+|| .+..    ..++..+...    ..++..++|+|. ...+++...| ++|+++|++..
T Consensus       214 ~~dg~iAiwD~~rni----enpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  214 NSDGDIAIWDTYRNI----ENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             cccCceeeccchhhh----ccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence            3489999999 4432    3343333322    234899999984 3356666655 68999998754

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=89.18  E-value=5.5  Score=27.40  Aligned_cols=47  Identities=9%  Similarity=0.047  Sum_probs=32.5

Q ss_pred             CCCeEEEeeCCCcEEEEecCCCCc---------------------cceecCCcEEEEeCCCCcceeee
Q psy1285          47 DSRHLISNSKDQTIKLWDVRKFNG---------------------AANSKDQTIKLWDVRKFSNKTAQ   93 (118)
Q Consensus        47 ~~~~l~s~~~d~~i~~wd~~~~~~---------------------~s~~~d~~i~iwd~~~~~~~~~~   93 (118)
                      ++..+..++.++.+..+|..+...                     +.++.++.+..||.++++...+.
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~  171 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTY  171 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEE
Confidence            355666777788888888765432                     44556888999999887765543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=88.83  E-value=2.9  Score=29.46  Aligned_cols=41  Identities=15%  Similarity=0.242  Sum_probs=28.9

Q ss_pred             ceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285          28 PVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus        28 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      |..-++..+++|.+++.| +--.+|.|..+|.+.|.|+|.+.
T Consensus        78 P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPa  118 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPA  118 (395)
T ss_dssp             EEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTE
T ss_pred             chhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCe
Confidence            333445567899999998 45589999999999999998654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=88.05  E-value=6.7  Score=29.52  Aligned_cols=53  Identities=15%  Similarity=0.172  Sum_probs=38.4

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeC--CCCCeEEEeeCCCcEEEEecC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPK--GDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      ...+.|||.+.+.   -+....+ ...+.|.+++|.  |+++.+++.|..+.|.++...
T Consensus        50 ~~~LtIWD~~~~~---lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   50 RSELTIWDTRSGV---LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             CCEEEEEEcCCcE---EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence            4588999998621   1222223 347889999994  689999999999999988664

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=87.49  E-value=5.7  Score=25.56  Aligned_cols=70  Identities=14%  Similarity=-0.000  Sum_probs=45.7

Q ss_pred             ccCcEEEEEeCCCCCeEE-EeeCCCcEEEEecCCCCc------------------------------cceecCCcEEEEe
Q psy1285          35 HRDGITFIDPKGDSRHLI-SNSKDQTIKLWDVRKFNG------------------------------AANSKDQTIKLWD   83 (118)
Q Consensus        35 h~~~v~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~------------------------------~s~~~d~~i~iwd   83 (118)
                      .....+.++|+|+++.|. +-+..+.|..+++.....                              ++.-..+.|.++|
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD  211 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred             CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence            345678999999998765 556667777777742110                              3333567888888


Q ss_pred             CCCCcceeeecccCcceeeEee
Q psy1285          84 VRKFSNKTAQRNTFRAVCEQNW  105 (118)
Q Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~  105 (118)
                      .. ++....+......++.++|
T Consensus       212 p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  212 PD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TT-SCEEEEEE-SSSSEEEEEE
T ss_pred             CC-ccEEEEEcCCCCCEEEEEE
Confidence            88 6666555533346778777

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=86.96  E-value=8.1  Score=26.75  Aligned_cols=76  Identities=16%  Similarity=0.124  Sum_probs=49.1

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCc----------EEEEEeCCCCCeEEEeeC-CCcEEEEecCCCCc--------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDG----------ITFIDPKGDSRHLISNSK-DQTIKLWDVRKFNG--------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~--------   70 (118)
                      .|.|.++.++.-.. ...++.. -.|.+.          +.+..+.|++++|++++. .-.|.+|++.....        
T Consensus       110 ~g~v~v~p~~~dG~-l~~~v~~-~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v  187 (346)
T COG2706         110 SGSVSVYPLQADGS-LQPVVQV-VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV  187 (346)
T ss_pred             CceEEEEEcccCCc-cccceee-eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc
Confidence            36777877764100 0112222 235544          888999999999988754 23688999875432        


Q ss_pred             -------------------cceecCCcEEEEeCCCC
Q psy1285          71 -------------------AANSKDQTIKLWDVRKF   87 (118)
Q Consensus        71 -------------------~s~~~d~~i~iwd~~~~   87 (118)
                                         +...-+++|.+|.....
T Consensus       188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence                               44566889999988764

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=86.92  E-value=7.7  Score=26.43  Aligned_cols=40  Identities=15%  Similarity=0.094  Sum_probs=25.5

Q ss_pred             CceeeecCccCcEEEEEeCCCCCeEEEee-CCCcEEEEecC
Q psy1285          27 KPVGVLAGHRDGITFIDPKGDSRHLISNS-KDQTIKLWDVR   66 (118)
Q Consensus        27 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~wd~~   66 (118)
                      .....+..+-..-+.++||||++.|.... ..+.|.-+++.
T Consensus       153 ~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         153 GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            33444445556678999999997665543 34666666654

>KOG2395|consensus

Probab=85.86  E-value=4.2  Score=29.93  Aligned_cols=55  Identities=18%  Similarity=0.233  Sum_probs=37.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      -+|.+|.||+||...     ...-.-+.+...+|..+..+.+|..++..+ +..+.|-++.
T Consensus       446 vgS~~GdIRLYdri~-----~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  446 VGSLKGDIRLYDRIG-----RRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             EeecCCcEEeehhhh-----hhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            467799999999843     122222446778899999999999876543 4556665554

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=85.24  E-value=2.3  Score=18.90  Aligned_cols=29  Identities=7%  Similarity=0.042  Sum_probs=18.3

Q ss_pred             ccCcEEEEEeCCCCCeEEEee-CC--CcEEEE
Q psy1285          35 HRDGITFIDPKGDSRHLISNS-KD--QTIKLW   63 (118)
Q Consensus        35 h~~~v~~~~~~~~~~~l~s~~-~d--~~i~~w   63 (118)
                      ..+.-....|+|||+.|+-.+ .+  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344567789999999887554 34  554444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2314|consensus

Probab=84.70  E-value=10  Score=28.20  Aligned_cols=51  Identities=10%  Similarity=0.111  Sum_probs=31.3

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecC---ccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAG---HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      ..++|||+++     +.....+..   ....-.-++||.|+.++|--.. .+|.+|+..+
T Consensus       282 ~~l~IWDI~t-----G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps  335 (698)
T KOG2314|consen  282 QQLIIWDIAT-----GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS  335 (698)
T ss_pred             ceEEEEEccc-----cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc
Confidence            6899999998     444433332   1112235678888888765433 4567776654

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=84.48  E-value=2.8  Score=30.56  Aligned_cols=33  Identities=18%  Similarity=0.359  Sum_probs=23.5

Q ss_pred             cEEEEEeCC----CCCeEEEeeCCCcEEEEecCCCCc
Q psy1285          38 GITFIDPKG----DSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus        38 ~v~~~~~~~----~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      .+..++...    +..++++.+.|+++++||+.+..+
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            344555555    567888999999999999987653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=84.19  E-value=14  Score=27.06  Aligned_cols=51  Identities=12%  Similarity=0.105  Sum_probs=33.3

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEe--eCCCcEEEEecCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISN--SKDQTIKLWDVRK   67 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~~d~~i~~wd~~~   67 (118)
                      ..+.|++++..    ..++  ...-.++|..++|+|.++.++..  -.+-++.++|++.
T Consensus       255 snLyl~~~~e~----~i~V--~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~  307 (561)
T COG5354         255 SNLYLLRITER----SIPV--EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG  307 (561)
T ss_pred             ceEEEEeeccc----ccce--eccccccceeeeecccCCceeEEecccccceeeccccc
Confidence            45666666531    1222  11457889999999988776654  4577788888775

>KOG3621|consensus

Probab=84.01  E-value=7.2  Score=29.52  Aligned_cols=76  Identities=11%  Similarity=0.103  Sum_probs=52.4

Q ss_pred             cCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------------cceecCCcEEEEeCCCCccee
Q psy1285          36 RDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------------AANSKDQTIKLWDVRKFSNKT   91 (118)
Q Consensus        36 ~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------------~s~~~d~~i~iwd~~~~~~~~   91 (118)
                      ...+.--++...+.+++.|+.-|.+.+|+-.....                        +.|+..+.|.++-+....+..
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            34444445566688999999999999998654322                        667778899999876643322


Q ss_pred             --ee---c-ccCcceeeEeeeeeccc
Q psy1285          92 --AQ---R-NTFRAVCEQNWEYRREN  111 (118)
Q Consensus        92 --~~---~-~~~~~v~~~~~~~~~~~  111 (118)
                        .+   . .|+..|+.+.|+.+...
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k  138 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMK  138 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccE
Confidence              11   1 45778999999976554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=83.89  E-value=11  Score=25.69  Aligned_cols=50  Identities=20%  Similarity=0.150  Sum_probs=28.6

Q ss_pred             eEEEEeCCCCCCCCCCceeeecCccCcEE--EEEeCCCCCeEEEeeC-----CCcEEEEecC
Q psy1285          12 TCFVWDRRTLNETTAKPVGVLAGHRDGIT--FIDPKGDSRHLISNSK-----DQTIKLWDVR   66 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~l~s~~~-----d~~i~~wd~~   66 (118)
                      ...+||.+.     ......+..-.+.-+  ...|++||++|.+.=.     .|.|-|||..
T Consensus        29 ~~~v~D~~~-----g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen   29 FALVFDCRT-----GQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             EEEEEEcCC-----CceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            345677776     344434433222221  4679999998877532     3556666666

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=83.49  E-value=6.2  Score=25.41  Aligned_cols=59  Identities=12%  Similarity=0.164  Sum_probs=36.2

Q ss_pred             cccCceEEEEeCCCCCCCCCC-ceee-ec-------CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285           7 VASLVTCFVWDRRTLNETTAK-PVGV-LA-------GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~-~~~~-~~-------~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      ...+|.+++||+......-.. .+.. +.       .....|..+.++.+|..+++-+ +|....|+..
T Consensus        28 iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   28 ITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            456899999999863221111 1111 11       2445677888888888776654 5667777654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.66  E-value=6.6  Score=28.20  Aligned_cols=71  Identities=11%  Similarity=0.057  Sum_probs=43.7

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC--------------Cc---
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF--------------NG---   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--------------~~---   70 (118)
                      ..++.|.+||..+     ...+..+...  .|..+.|++++.+++..+.+ .+.+++....              ..   
T Consensus       123 ~~~~~i~~yDw~~-----~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E  194 (443)
T PF04053_consen  123 KSSDFICFYDWET-----GKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE  194 (443)
T ss_dssp             EETTEEEEE-TTT-------EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE
T ss_pred             ECCCCEEEEEhhH-----cceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE
Confidence            3455799999987     6777777632  38899999999999888765 4555443322              11   


Q ss_pred             -----cceecCCcEEEEeCCC
Q psy1285          71 -----AANSKDQTIKLWDVRK   86 (118)
Q Consensus        71 -----~s~~~d~~i~iwd~~~   86 (118)
                           -+|.+++.+-+|-..+
T Consensus       195 ~~~~IkSg~W~~d~fiYtT~~  215 (443)
T PF04053_consen  195 ISERIKSGCWVEDCFIYTTSN  215 (443)
T ss_dssp             E-S--SEEEEETTEEEEE-TT
T ss_pred             ecceeEEEEEEcCEEEEEcCC
Confidence                 5677888888888776

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=82.22  E-value=14  Score=28.46  Aligned_cols=25  Identities=12%  Similarity=0.028  Sum_probs=19.1

Q ss_pred             cEEEEEeCCCCCeEEEeeCCCcEEE
Q psy1285          38 GITFIDPKGDSRHLISNSKDQTIKL   62 (118)
Q Consensus        38 ~v~~~~~~~~~~~l~s~~~d~~i~~   62 (118)
                      .|..+.++++|++++..|..+.+.+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~  110 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVL  110 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEE
Confidence            5778888999999988877654433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=82.22  E-value=7  Score=28.57  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=19.3

Q ss_pred             cceecCCcEEEEeCCCCcceeee
Q psy1285          71 AANSKDQTIKLWDVRKFSNKTAQ   93 (118)
Q Consensus        71 ~s~~~d~~i~iwd~~~~~~~~~~   93 (118)
                      ++.+.|+++|+||+.+...+...
T Consensus       234 ~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  234 FTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EEEETTSEEEEEETTTTCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCeEEEEe
Confidence            56789999999999999985443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2079|consensus

Probab=81.61  E-value=4  Score=32.43  Aligned_cols=39  Identities=15%  Similarity=0.145  Sum_probs=28.8

Q ss_pred             cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeec
Q psy1285          71 AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  109 (118)
                      +.|-.+|-|.+||....+....+..+..+++.+....+.
T Consensus       146 ~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t  184 (1206)
T KOG2079|consen  146 LAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRT  184 (1206)
T ss_pred             ccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEe
Confidence            455678999999999988888777666666665554433

>KOG2377|consensus

Probab=81.38  E-value=11  Score=27.60  Aligned_cols=55  Identities=13%  Similarity=0.061  Sum_probs=37.8

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      .|.+.=|-++.++.+  .++..--...++|.+++|++|...+|.--.+++|.+++..
T Consensus        42 SggatgvvvkgpndD--VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~   96 (657)
T KOG2377|consen   42 SGGATGVVVKGPNDD--VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI   96 (657)
T ss_pred             cCCeeEEEEeCCCCC--CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecC
Confidence            345555666553322  1221112356799999999999999999999999999883

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=80.27  E-value=16  Score=25.02  Aligned_cols=29  Identities=21%  Similarity=0.280  Sum_probs=22.2

Q ss_pred             cEEEEEeCCCCCeEEEe-eCCCcEEEEecC
Q psy1285          38 GITFIDPKGDSRHLISN-SKDQTIKLWDVR   66 (118)
Q Consensus        38 ~v~~~~~~~~~~~l~s~-~~d~~i~~wd~~   66 (118)
                      ....+.++|++++|... ...++|.+|++.
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            57789999999987654 456789999984

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-05

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 31/102 (30%)
Query: 10  LVTC------FVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLW 63
           +VTC       VWD  +  + T + V  L GHR  +  +D   D ++++S S D+TIK+W
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRV--LVGHRAAVNVVD--FDDKYIVSASGDRTIKVW 281
Query: 64  D------VRKFNG---------------AANSKDQTIKLWDV 84
           +      VR  NG                + S D TI+LWD+
Sbjct: 282 NTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 323

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.83
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.81
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.8
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.79
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.79
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.79
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.79
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.79
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.78
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.76
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.76
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.76
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.75
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.75
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.74
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.74
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.74
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.74
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.73
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.73
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.73
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.73
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.72
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.72
2pm7_B	297	Protein transport protein SEC13, protein transport	99.71
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.71
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.71
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.71
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.71
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.71
2pm7_B	297	Protein transport protein SEC13, protein transport	99.71
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.7
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.7
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.7
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.7
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.7
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.69
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.69
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.69
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.68
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.67
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.67
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.67
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.66
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.66
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.66
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.66
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.66
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.66
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.65
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.65
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.64
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.64
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.64
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.63
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.63
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.62
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.61
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.61
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.61
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.61
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.61
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.6
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.6
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.6
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.6
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.59
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.59
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.59
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.59
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.59
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.58
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.58
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.58
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.58
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.58
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.57
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.57
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.57
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.57
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.57
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.57
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.57
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.56
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.56
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.56
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.56
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.56
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.56
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.55
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.55
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.54
3jro_A	753	Fusion protein of protein transport protein SEC13	99.54
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.54
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.54
3jro_A	753	Fusion protein of protein transport protein SEC13	99.54
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.54
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.53
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.53
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.53
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.52
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.51
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.51
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.51
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.5
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.5
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.5
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.5
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.5
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.5
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.49
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.46
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.45
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.45
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.45
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.45
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.44
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.44
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.43
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.41
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.39
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.38
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.36
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.29
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.22
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.18
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.16
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.15
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.15
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.81
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.8
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.77
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.7
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.65
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.6
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.57
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.56
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.53
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.52
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.52
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.49
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.48
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.43
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.35
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.34
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.33
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.33
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.29
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.28
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.27
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.21
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.2
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.18
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.12
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.08
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.05
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.04
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.03
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.01
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.0
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.0
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.97
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.8
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.72
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.7
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.69
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.66
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.58
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.57
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.54
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.53
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.51
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.42
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.37
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.34
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.32
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.31
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.28
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.19
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.19
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.16
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.09
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.01
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.97
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.86
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.82
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.79
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.69
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	96.53
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.47
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.36
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.18
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.16
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.12
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	96.04
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.03
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	95.87
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	95.74
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	95.68
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	95.65
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	95.55
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	95.41
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	95.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	95.2
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.17
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	94.97
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	94.95
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	94.04
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	94.01
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	93.96
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	93.51
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	93.32
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	93.3
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	93.0
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	92.96
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	92.86
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	92.3
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	91.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	91.36
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	91.32
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	91.05
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	90.44
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	89.95
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	89.65
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	89.52
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	89.38
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	89.15
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	88.64
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	87.77
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	87.44
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	87.17
2qe8_A	343	Uncharacterized protein; structural genomics, join	87.04
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	86.67
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	86.65
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	86.63
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	86.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	85.91
2qe8_A	343	Uncharacterized protein; structural genomics, join	85.48
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	84.92
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	84.15
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	82.62
2ece_A	462	462AA long hypothetical selenium-binding protein;	82.41
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	82.38
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	81.21
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.6

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.83  E-value=1.4e-19  Score=120.38  Aligned_cols=100  Identities=18%  Similarity=0.201  Sum_probs=87.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCC-CeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDS-RHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.|++|++||+..     .+++..+.+|.+.|.+++|++++ ..+++++.|++|++||+++...              
T Consensus       144 sgs~d~~i~iwd~~~-----~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  218 (344)
T 4gqb_B          144 SGSKDICIKVWDLAQ-----QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT  218 (344)
T ss_dssp             EEETTSCEEEEETTT-----TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEE
T ss_pred             EEeCCCeEEEEECCC-----CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccce
Confidence            678899999999987     78888999999999999999987 4789999999999999987543              


Q ss_pred             ------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecc
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                                  ++|+.|++|++||+++++.+..+..|...|..+.|++.-.
T Consensus       219 ~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~  270 (344)
T 4gqb_B          219 SLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSV  270 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSS
T ss_pred             eeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence                        6788999999999999999999999999999999987543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.81  E-value=5.9e-19  Score=115.14  Aligned_cols=101  Identities=19%  Similarity=0.253  Sum_probs=87.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.|++|++||++..    ......+.+|...|.+++|+| ++..|++|+.|++|++||++....              
T Consensus       114 sgs~D~~v~lWd~~~~----~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~  189 (304)
T 2ynn_A          114 SGSDDLTVKLWNWENN----WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY  189 (304)
T ss_dssp             EEETTSCEEEEEGGGT----TEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEE
T ss_pred             EECCCCeEEEEECCCC----cchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEE
Confidence            7889999999999862    345567889999999999999 678999999999999999865321              


Q ss_pred             ------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecc
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                                  ++|+.|++|++||+++++....+.+|...|..+.|++..+
T Consensus       190 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~  241 (304)
T 2ynn_A          190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP  241 (304)
T ss_dssp             EEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCC
Confidence                        7889999999999999999989999999999998876543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.80  E-value=6.9e-19  Score=115.84  Aligned_cols=98  Identities=26%  Similarity=0.276  Sum_probs=88.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|+.|++||++.     .+.+..+.+|...|.+++|+|++++|++++.|++|++||++....               
T Consensus       181 sg~~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  255 (321)
T 3ow8_A          181 SGAIDGIINIFDIAT-----GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA  255 (321)
T ss_dssp             EEETTSCEEEEETTT-----TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EEcCCCeEEEEECCC-----CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence            567899999999987     678888999999999999999999999999999999999986442               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                              ++++.|++|++||+++++....+..|...|..+.|++.
T Consensus       256 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~  301 (321)
T 3ow8_A          256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN  301 (321)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCC
Confidence                    78899999999999999999888899999999999754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.79  E-value=1e-18  Score=118.34  Aligned_cols=97  Identities=30%  Similarity=0.353  Sum_probs=85.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|+|||+..     +.....+.+|.+.|.+++|+|++++|++|+.|++|++||+.+...               
T Consensus       125 s~s~Dg~i~vwd~~~-----~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~  199 (410)
T 1vyh_C          125 SASEDATIKVWDYET-----GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS  199 (410)
T ss_dssp             EEESSSCEEEEETTT-----CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEE
T ss_pred             EEeCCCeEEEEECCC-----CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEE
Confidence            778899999999987     677788999999999999999999999999999999999976432               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                              ++|+.|++|++||++++.....+..|...+..+.|++
T Consensus       200 ~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~  244 (410)
T 1vyh_C          200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ  244 (410)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred             EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC
Confidence                    7889999999999999998888888887777776653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.79  E-value=2.2e-18  Score=114.69  Aligned_cols=98  Identities=23%  Similarity=0.254  Sum_probs=87.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|++||++.     ..++..+.+|...|.+++|+|++.+|++++.|++|++||++....               
T Consensus       215 sgs~Dg~v~~wd~~~-----~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~  289 (354)
T 2pbi_B          215 SGGCDKKAMVWDMRS-----GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS  289 (354)
T ss_dssp             EEETTSCEEEEETTT-----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             EEeCCCeEEEEECCC-----CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE
Confidence            678899999999987     677888899999999999999999999999999999999875321               


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                ++|+.|++|++||++++.....+..|...|..+.|++.
T Consensus       290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spd  337 (354)
T 2pbi_B          290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD  337 (354)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT
T ss_pred             EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCC
Confidence                      67888999999999999988888899999999999764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.79  E-value=2.2e-18  Score=113.95  Aligned_cols=98  Identities=20%  Similarity=0.204  Sum_probs=87.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|++|++||++.     ......+.+|...|.+++|+|++++|++++.|++|++||++....               
T Consensus       201 sg~~d~~v~~wd~~~-----~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~  275 (340)
T 1got_B          201 SGACDASAKLWDVRE-----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             EEETTSCEEEEETTT-----CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             EEeCCCcEEEEECCC-----CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence            678899999999987     677888999999999999999999999999999999999975321               


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                ++|+.|+.|++||+++......+.+|...|..+.|++.
T Consensus       276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~d  323 (340)
T 1got_B          276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCC
Confidence                      77889999999999999988888899999999999754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.79  E-value=7.3e-19  Score=114.69  Aligned_cols=98  Identities=14%  Similarity=0.114  Sum_probs=85.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|++||+..     ...+..+..|...|.+++|+|++++|++++.|++|++||+.+...               
T Consensus        30 s~~~dg~v~lWd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  104 (304)
T 2ynn_A           30 TTLYSGRVELWNYET-----QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA  104 (304)
T ss_dssp             EEETTSEEEEEETTT-----TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             EEcCCCcEEEEECCC-----CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence            788899999999987     677888889999999999999999999999999999999987543               


Q ss_pred             --------cceecCCcEEEEeCCCCcce-eeecccCcceeeEeeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNK-TAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~  108 (118)
                              ++|+.|++|++||+++.... ..+..|...|..+.|++.
T Consensus       105 ~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~  151 (304)
T 2ynn_A          105 VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK  151 (304)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT
T ss_pred             EcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC
Confidence                    78999999999999987544 456688888999988763

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.79  E-value=2.3e-18  Score=114.60  Aligned_cols=103  Identities=18%  Similarity=0.209  Sum_probs=79.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|+|||+..+.. .......+.+|.+.|.+++|+|++++|++++.|++|++||+++...               
T Consensus        98 ~~s~dg~v~lWd~~~~~~-~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~  176 (344)
T 4gqb_B           98 VASDSGAVELWELDENET-LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVA  176 (344)
T ss_dssp             EEETTSEEEEEEECTTSS-CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEECCCEEEEEeccCCCc-eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEE
Confidence            678899999999987211 0011223458999999999999999999999999999999987543               


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeec--ccCcceeeEeeeeec
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQR--NTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~  109 (118)
                               ++++.|++|++||+++++....+.  .+...+..+.|++.-
T Consensus       177 ~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~  226 (344)
T 4gqb_B          177 ASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ  226 (344)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSC
T ss_pred             ecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCC
Confidence                     678899999999999998877654  344456777776543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.78  E-value=4.3e-18  Score=111.77  Aligned_cols=98  Identities=19%  Similarity=0.327  Sum_probs=86.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|++|++||+..     .+....+.+|.+.|.+++|+|++.++++++.|++|++||++....               
T Consensus        82 s~s~D~~v~~wd~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~  156 (319)
T 3frx_A           82 SASWDKTLRLWDVAT-----GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRV  156 (319)
T ss_dssp             EEETTSEEEEEETTT-----TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEE
T ss_pred             EEeCCCEEEEEECCC-----CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEE
Confidence            788899999999987     677888999999999999999999999999999999999864211               


Q ss_pred             -------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                   ++++.|+.|++||+++......+..|...|..+.|++.
T Consensus       157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~  207 (319)
T 3frx_A          157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD  207 (319)
T ss_dssp             CCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTT
T ss_pred             ccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCC
Confidence                         67889999999999999888888889999999888754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.76  E-value=5.7e-18  Score=114.62  Aligned_cols=98  Identities=26%  Similarity=0.430  Sum_probs=88.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|++|++||+..     .+.+..+.+|...|.+++|+|++.++++++.|++|++||+++...               
T Consensus       167 sgs~D~~i~iwd~~~-----~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~  241 (410)
T 1vyh_C          167 SCSADMTIKLWDFQG-----FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR  241 (410)
T ss_dssp             EEETTSCCCEEETTS-----SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             EEeCCCeEEEEeCCC-----CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence            788999999999986     677888899999999999999999999999999999999986542               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                              ++|+.|++|++||+++......+..|...|..+.|++.
T Consensus       242 ~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~  287 (410)
T 1vyh_C          242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE  287 (410)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCS
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCc
Confidence                    78899999999999999888888889999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.76  E-value=6e-18  Score=113.39  Aligned_cols=99  Identities=18%  Similarity=0.192  Sum_probs=84.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|++|++||++..    ...+..+.+|.+.|.+++|+|++.+|++++.|++|++||+++...               
T Consensus       223 sgs~D~~v~~wd~~~~----~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~  298 (380)
T 3iz6_a          223 SGSCDTTVRLWDLRIT----SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNEL  298 (380)
T ss_dssp             EEETTSCEEEEETTTT----CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSS
T ss_pred             EEECCCeEEEEECCCC----CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccccc
Confidence            6788999999999842    467778899999999999999999999999999999999975321               


Q ss_pred             ---------------cceecCCcEEEEeCCCCcceeee----cccCcceeeEeeeee
Q psy1285          71 ---------------AANSKDQTIKLWDVRKFSNKTAQ----RNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ---------------~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~  108 (118)
                                     ++|+.|+.|++||+...+....+    ..|...|.++.|++.
T Consensus       299 ~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  355 (380)
T 3iz6_a          299 PIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD  355 (380)
T ss_dssp             CSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSS
T ss_pred             CceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCC
Confidence                           67888999999999988877655    468888999888764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.76  E-value=7.7e-18  Score=110.56  Aligned_cols=102  Identities=22%  Similarity=0.276  Sum_probs=83.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|++|++|++.........++..+.+|...|.+++|+|++++|++++.|++|++||+.+...               
T Consensus        35 s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~  114 (319)
T 3frx_A           35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD  114 (319)
T ss_dssp             EEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEE
Confidence            78899999999997532222345678899999999999999999999999999999999987543               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                              ++|+.|++|++||++. .....+..|...+..+.|.+.
T Consensus       115 ~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~  159 (319)
T 3frx_A          115 IDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPN  159 (319)
T ss_dssp             ECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccC
Confidence                    7889999999999974 445566678878887777653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.75  E-value=2.4e-17  Score=107.33  Aligned_cols=98  Identities=23%  Similarity=0.365  Sum_probs=87.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||.|++|+...     ......+.+|...|.+++|+|++++|++++.|+.|++||+++...               
T Consensus        40 s~~~dg~i~iw~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  114 (312)
T 4ery_A           40 SSSADKLIKIWGAYD-----GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN  114 (312)
T ss_dssp             EEETTSCEEEEETTT-----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             EeeCCCeEEEEeCCC-----cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            678899999999986     677778889999999999999999999999999999999986543               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                              ++|+.|++|++||+++.+....+..|...+..+.|++.
T Consensus       115 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (312)
T 4ery_A          115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD  160 (312)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence                    78899999999999999988888888888998888754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.75  E-value=2.1e-17  Score=110.12  Aligned_cols=101  Identities=15%  Similarity=0.249  Sum_probs=88.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCC-eEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSR-HLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.|++|++||++.     .+.+..+.+|.+.|.+++|++++. .+++++.|++|++||+++...              
T Consensus       156 sgs~dg~v~iwd~~~-----~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~  230 (357)
T 4g56_B          156 SGGKDFSVKVWDLSQ-----KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPT  230 (357)
T ss_dssp             EEETTSCEEEEETTT-----TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEE
T ss_pred             EEeCCCeEEEEECCC-----CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccccccc
Confidence            678899999999987     788888999999999999999764 789999999999999986543              


Q ss_pred             ------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeeccc
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  111 (118)
                                  ++|+.|+.|++||+++++....+..|...|..+.|++.-..
T Consensus       231 ~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  283 (357)
T 4g56_B          231 SVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSP  283 (357)
T ss_dssp             EEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSC
T ss_pred             chhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCC
Confidence                        67888999999999999999888899999999999865433

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.74  E-value=2.1e-17  Score=108.91  Aligned_cols=103  Identities=15%  Similarity=0.275  Sum_probs=77.1

Q ss_pred             ccccCceEEEEeCCCCCC--CCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC----c---------
Q psy1285           6 QVASLVTCFVWDRRTLNE--TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN----G---------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----~---------   70 (118)
                      +++.|++|+|||+.....  ....+...+.+|.+.|.+++|+|++++|++++.|++|++||++...    .         
T Consensus        75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~  154 (330)
T 2hes_X           75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ  154 (330)
T ss_dssp             EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred             EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence            678899999999964211  1134567788999999999999999999999999999999994211    0         


Q ss_pred             --------------cceecCCcEEEEeCCCC--cceeeecccCcceeeEeeeee
Q psy1285          71 --------------AANSKDQTIKLWDVRKF--SNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                    ++++.|++|++||.+..  .....+.+|...|..+.|++.
T Consensus       155 ~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~  208 (330)
T 2hes_X          155 DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT  208 (330)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCS
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCC
Confidence                          78899999999998876  455666788888888888765

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.74  E-value=3.1e-17  Score=107.18  Aligned_cols=102  Identities=19%  Similarity=0.250  Sum_probs=79.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|++|+|||+.........+...+.+|.+.|.+++|+|++++|++++.|+.|++|+......               
T Consensus        56 S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  135 (340)
T 4aow_A           56 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA  135 (340)
T ss_dssp             EEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEE
Confidence            78899999999998744334456778899999999999999999999999999999999876432               


Q ss_pred             -----------------------------------------------------cceecCCcEEEEeCCCCcceeeecccC
Q psy1285          71 -----------------------------------------------------AANSKDQTIKLWDVRKFSNKTAQRNTF   97 (118)
Q Consensus        71 -----------------------------------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~   97 (118)
                                                                           ++++.|+.|++||+++......+..|.
T Consensus       136 ~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~  215 (340)
T 4aow_A          136 FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT  215 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC
Confidence                                                                 455667777777777776666666677


Q ss_pred             cceeeEeeee
Q psy1285          98 RAVCEQNWEY  107 (118)
Q Consensus        98 ~~v~~~~~~~  107 (118)
                      ..|..+.|++
T Consensus       216 ~~v~~~~~s~  225 (340)
T 4aow_A          216 GYLNTVTVSP  225 (340)
T ss_dssp             SCEEEEEECT
T ss_pred             CcEEEEEECC
Confidence            7777766654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.74  E-value=6.9e-17  Score=106.78  Aligned_cols=98  Identities=14%  Similarity=0.188  Sum_probs=87.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|+|||+..     ......+..|...|.+++|+|+++++++++.|+.+++||+.+...               
T Consensus        72 s~s~Dg~v~iWd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v  146 (340)
T 1got_B           72 SASQDGKLIIWDSYT-----TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL  146 (340)
T ss_dssp             EEETTTEEEEEETTT-----CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCE
T ss_pred             EEeCCCcEEEEECCC-----CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccE
Confidence            788999999999987     677788888999999999999999999999999999999875421               


Q ss_pred             -----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                 ++++.|++|++||++++.....+..|...|..+.|++.
T Consensus       147 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~  195 (340)
T 1got_B          147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD  195 (340)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC
Confidence                       67889999999999999988888889989999888764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.74  E-value=4.2e-17  Score=109.72  Aligned_cols=97  Identities=26%  Similarity=0.337  Sum_probs=83.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|++|++||+..     .+....+.+|...|.+++|+|++.+|++++.|++|++||+++...               
T Consensus       140 s~~~d~~i~iwd~~~-----~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~  214 (393)
T 1erj_A          140 TGAEDRLIRIWDIEN-----RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV  214 (393)
T ss_dssp             EEETTSCEEEEETTT-----TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             EEcCCCeEEEEECCC-----CcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEE
Confidence            678899999999987     677788899999999999999999999999999999999986432               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeee-------cccCcceeeEeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQ-------RNTFRAVCEQNWEY  107 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~  107 (118)
                              ++|+.|+.|++||++++.....+       ..|...|..+.|++
T Consensus       215 ~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~  266 (393)
T 1erj_A          215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR  266 (393)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC
Confidence                    77889999999999988776554       35677788777764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.73  E-value=1.7e-17  Score=112.81  Aligned_cols=101  Identities=11%  Similarity=0.015  Sum_probs=81.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.||.|+|||+...   .......+.+|.+.|.+++|+| ++.+|++++.|++|++||++....              
T Consensus       137 sGs~dg~i~lWd~~~~---~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  213 (435)
T 4e54_B          137 VGSKGGDIMLWNFGIK---DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFC  213 (435)
T ss_dssp             EEETTSCEEEECSSCC---SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCC
T ss_pred             EEeCCCEEEEEECCCC---CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEE
Confidence            5678999999999762   1234455678999999999998 688999999999999999875321              


Q ss_pred             -----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecc
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                                 ++|+.|+.|++||++. .....+..|...|..+.|++.-+
T Consensus       214 ~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~  263 (435)
T 4e54_B          214 SLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCD  263 (435)
T ss_dssp             CEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCS
T ss_pred             EEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCc
Confidence                       6788999999999975 44556678888999998876543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.73  E-value=6.3e-17  Score=104.87  Aligned_cols=59  Identities=17%  Similarity=0.322  Sum_probs=50.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeee--cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVL--AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      .++.|++|+|||+.+     ++....+  .+|...|.+++|+|++++|++|+.|++|++||+++..
T Consensus        40 Avg~D~tV~iWd~~t-----g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~  100 (318)
T 4ggc_A           40 AVALDNSVYLWSASS-----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  100 (318)
T ss_dssp             EEEETTEEEEEETTT-----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             EEEeCCEEEEEECCC-----CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence            356799999999987     5655544  4678889999999999999999999999999998643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.73  E-value=9e-17  Score=105.75  Aligned_cols=98  Identities=17%  Similarity=0.103  Sum_probs=86.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||.|++||+..     ......+..|...+.+++|+|++++|++++.|+.|++||+++...               
T Consensus       139 ~g~~dg~v~i~~~~~-----~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~  213 (321)
T 3ow8_A          139 TGTHVGKVNIFGVES-----GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT  213 (321)
T ss_dssp             EECTTSEEEEEETTT-----CSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEE
T ss_pred             EEcCCCcEEEEEcCC-----CceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEE
Confidence            567899999999987     667777888999999999999999999999999999999986432               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                              ++|+.|++|++||++.......+..|...|..+.|++.
T Consensus       214 ~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  259 (321)
T 3ow8_A          214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD  259 (321)
T ss_dssp             ECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCC
Confidence                    78899999999999999988888889999999988764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.73  E-value=8.5e-17  Score=106.37  Aligned_cols=97  Identities=21%  Similarity=0.301  Sum_probs=81.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC----------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN----------------   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----------------   69 (118)
                      +++.|++|++||++.     ......+.+|.+.|.+++|+|++++|++++.|++|++||+....                
T Consensus        93 s~s~D~~v~lwd~~~-----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~  167 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRT-----GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC  167 (343)
T ss_dssp             EEETTSEEEEEETTS-----SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred             EEcCCCcEEEEECCC-----CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence            778899999999987     67788899999999999999999999999999999999985210                


Q ss_pred             -------------------ccceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          70 -------------------GAANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        70 -------------------~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                         .++++.|++|++||. .......+..|...|..+.|++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~  224 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPN  224 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTT
T ss_pred             eeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCC
Confidence                               056788999999994 44555566688888888888754

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.72  E-value=5e-17  Score=107.69  Aligned_cols=100  Identities=18%  Similarity=0.253  Sum_probs=82.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|++++|||+...   .......+.+|.+.|.+++|+|++++|++++.|++|++||++....               
T Consensus        78 s~s~D~~v~iw~~~~~---~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~  154 (345)
T 3fm0_A           78 SASFDATTCIWKKNQD---DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK  154 (345)
T ss_dssp             EEETTSCEEEEEECCC----EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred             EEECCCcEEEEEccCC---CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence            6788999999998752   1345678889999999999999999999999999999999875321               


Q ss_pred             -----------cceecCCcEEEEeCCCCcc--eeeecccCcceeeEeeeee
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSN--KTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~  108 (118)
                                 ++++.|++|++||.+....  ...+.+|...|..+.|++.
T Consensus       155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~  205 (345)
T 3fm0_A          155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS  205 (345)
T ss_dssp             EEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC
Confidence                       7889999999999987753  3456688888888888753

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.72  E-value=7.2e-17  Score=115.21  Aligned_cols=98  Identities=20%  Similarity=0.277  Sum_probs=86.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|++|+|||+..     ......+.+|.+.|.+++|+|++++|++++.|++|++||......               
T Consensus       447 sgs~Dg~v~vwd~~~-----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~  521 (694)
T 3dm0_A          447 SGSWDGELRLWDLAA-----GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS  521 (694)
T ss_dssp             EEETTSEEEEEETTT-----TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred             EEeCCCcEEEEECCC-----CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence            678899999999987     677788899999999999999999999999999999999743110               


Q ss_pred             -------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                   ++++.|++|++||+++......+..|...|..+.|++.
T Consensus       522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd  572 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD  572 (694)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCC
Confidence                         67889999999999999888888899999999998764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.71  E-value=2.7e-16  Score=102.22  Aligned_cols=100  Identities=17%  Similarity=0.162  Sum_probs=81.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC--CCCeEEEeeCCCcEEEEecCCCC--c-----------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG--DSRHLISNSKDQTIKLWDVRKFN--G-----------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~--~-----------   70 (118)
                      +++.|++|+|||+...   ...++..+.+|.+.|.+++|++  ++++|++++.|++|++||+++..  .           
T Consensus        26 s~s~D~~v~iw~~~~~---~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v  102 (297)
T 2pm7_B           26 TCSSDKTIKIFEVEGE---THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASV  102 (297)
T ss_dssp             EEETTSCEEEEEBCSS---CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCE
T ss_pred             EEeCCCEEEEEecCCC---CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCce
Confidence            7788999999999741   2466788999999999999986  38899999999999999997542  0           


Q ss_pred             --------------cceecCCcEEEEeCCCCcc--eeeecccCcceeeEeeeee
Q psy1285          71 --------------AANSKDQTIKLWDVRKFSN--KTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~  108 (118)
                                    ++++.|++|++||++....  ...+..|...+..+.|++.
T Consensus       103 ~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B          103 NSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (297)
T ss_dssp             EEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred             eEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence                          6788899999999987642  3345578888888888764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.71  E-value=6e-17  Score=113.18  Aligned_cols=100  Identities=6%  Similarity=-0.121  Sum_probs=83.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEE--EeCCCC-CeEEEeeCCCcEEEEecCCCC-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFI--DPKGDS-RHLISNSKDQTIKLWDVRKFN-------------   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~l~s~~~d~~i~~wd~~~~~-------------   69 (118)
                      +++.||+|++||++.+    ..+...+.+|.+.|.++  .|++++ .+|++++.|++|+|||+++..             
T Consensus       282 sgs~DgtV~lWD~~~~----~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~  357 (524)
T 2j04_B          282 CGFKNGFVAEFDLTDP----EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN  357 (524)
T ss_dssp             EEETTSEEEEEETTBC----SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred             EEeCCCEEEEEECCCC----CCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence            6788999999999862    34556688999999999  578887 899999999999999986411             


Q ss_pred             --c----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeec
Q psy1285          70 --G----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        70 --~----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  109 (118)
                        .          ++++.|++|++||++.+.....+.+|...|..+.|++.-
T Consensus       358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g  409 (524)
T 2j04_B          358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH  409 (524)
T ss_dssp             CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC
T ss_pred             ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCC
Confidence              0          667789999999999998888888899999999998754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.71  E-value=4.1e-18  Score=114.76  Aligned_cols=86  Identities=16%  Similarity=0.167  Sum_probs=68.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC--------CCCeEEEeeCCCcEEEEecCCCCc-------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG--------DSRHLISNSKDQTIKLWDVRKFNG-------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l~s~~~d~~i~~wd~~~~~~-------   70 (118)
                      +++.|++|||||.+........++..+.+|.+.|.+++|+|        ++++|++++.|++|+|||+++...       
T Consensus       106 s~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~  185 (393)
T 4gq1_A          106 CVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPL  185 (393)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEEC
T ss_pred             EEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCC
Confidence            67889999999998632211233455789999999999987        788999999999999999976432       


Q ss_pred             -----------------cceecCCcEEEEeCCCCccee
Q psy1285          71 -----------------AANSKDQTIKLWDVRKFSNKT   91 (118)
Q Consensus        71 -----------------~s~~~d~~i~iwd~~~~~~~~   91 (118)
                                       ++++.|++|++||++++....
T Consensus       186 ~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~  223 (393)
T 4gq1_A          186 SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAE  223 (393)
T ss_dssp             SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---
T ss_pred             CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccc
Confidence                             788999999999999887654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.71  E-value=3e-16  Score=102.15  Aligned_cols=98  Identities=19%  Similarity=0.291  Sum_probs=83.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|+.|++||++.     ...+..+.+|...|.+++|+|+++++++++.|+.|++||+++...               
T Consensus        82 s~~~d~~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  156 (312)
T 4ery_A           82 SASDDKTLKIWDVSS-----GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH  156 (312)
T ss_dssp             EEETTSEEEEEETTT-----CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EECCCCEEEEEECCC-----CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEE
Confidence            678899999999987     677888899999999999999999999999999999999986543               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeec-ccCcceeeEeeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQR-NTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~  108 (118)
                              ++++.|+.|++||+++.+....+. .+...+..+.|++.
T Consensus       157 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (312)
T 4ery_A          157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN  203 (312)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTT
T ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCC
Confidence                    788899999999999988776654 44556777777643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.71  E-value=3.1e-17  Score=109.35  Aligned_cols=104  Identities=18%  Similarity=0.241  Sum_probs=76.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|+|||+...... ........+|.+.|.+++|+|++++|++++.|++|++||+++...               
T Consensus       110 ~~s~dg~v~lWd~~~~~~~-~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~  188 (357)
T 4g56_B          110 VASDSGAVELWEILEKESL-LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA  188 (357)
T ss_dssp             EEETTSCEEEC---------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEECCCEEEEeecccccee-EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            6788999999999863210 112233457999999999999999999999999999999986543               


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeec--ccCcceeeEeeeeecc
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQR--NTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~  110 (118)
                               ++++.|++|++||+++++....+.  .+...+..+.|++...
T Consensus       189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  239 (357)
T 4g56_B          189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD  239 (357)
T ss_dssp             ECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred             EccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence                     678889999999999988765543  5566788888876443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.71  E-value=1.2e-16  Score=105.92  Aligned_cols=99  Identities=16%  Similarity=0.204  Sum_probs=79.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCc--e-eeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKP--V-GVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~--~-~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      +++.|++|+|||+..     ...  . ....+|.+.|.+++|+|++++|++++.|+++++||+.....            
T Consensus        33 s~~~D~~i~iw~~~~-----~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~  107 (345)
T 3fm0_A           33 SCGGDRRIRIWGTEG-----DSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE  107 (345)
T ss_dssp             EEETTSCEEEEEEET-----TEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC
T ss_pred             EEcCCCeEEEEEcCC-----CcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC
Confidence            788999999999975     221  1 22368999999999999999999999999999999865321            


Q ss_pred             -------------cceecCCcEEEEeCCCCcce---eeecccCcceeeEeeeeec
Q psy1285          71 -------------AANSKDQTIKLWDVRKFSNK---TAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 -------------~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~  109 (118)
                                   ++|+.|++|++||++.....   ..+..|...|..+.|++.-
T Consensus       108 v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  162 (345)
T 3fm0_A          108 VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ  162 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred             ceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence                         78899999999999876543   3455788889888887653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.71  E-value=2.2e-16  Score=102.61  Aligned_cols=100  Identities=12%  Similarity=0.184  Sum_probs=82.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC--CCeEEEeeCCCcEEEEecCCCC--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD--SRHLISNSKDQTIKLWDVRKFN--------------   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~--------------   69 (118)
                      +++.|++|+|||+..+   .......+.+|...|.+++|+|+  +.+|++++.|++|++||++...              
T Consensus        72 s~s~D~~v~iWd~~~~---~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v  148 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENG---RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  148 (297)
T ss_dssp             EEETTTEEEEEEBSSS---CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCE
T ss_pred             EEcCCCEEEEEEcCCC---ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCcc
Confidence            6788999999999862   12355667789999999999997  8899999999999999987531              


Q ss_pred             ------------------------ccceecCCcEEEEeCCCCc----ceeeecccCcceeeEeeeee
Q psy1285          70 ------------------------GAANSKDQTIKLWDVRKFS----NKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        70 ------------------------~~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~  108 (118)
                                              .++|+.|++|++||++...    ....+.+|...|..+.|++.
T Consensus       149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~  215 (297)
T 2pm7_B          149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  215 (297)
T ss_dssp             EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCC
Confidence                                    1567889999999998766    34456689999999999875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.70  E-value=3e-16  Score=105.57  Aligned_cols=97  Identities=24%  Similarity=0.345  Sum_probs=81.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeee-------cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVL-------AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------   70 (118)
                      +++.|+.|++||++.     ...+..+       .+|.+.|.+++|+|++++|++++.|++|++||+++...        
T Consensus       224 ~~s~d~~v~iwd~~~-----~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  298 (393)
T 1erj_A          224 AGSLDRAVRVWDSET-----GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  298 (393)
T ss_dssp             EEETTSCEEEEETTT-----CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             EEcCCCcEEEEECCC-----CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence            577899999999986     4444444       57999999999999999999999999999999875210        


Q ss_pred             ---------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 ---------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ---------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                                                 ++|+.|+.|++||++++.....+.+|...|..+.|+.
T Consensus       299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~  362 (393)
T 1erj_A          299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN  362 (393)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred             CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence                                       7889999999999999998888889999999998875

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.70  E-value=8e-17  Score=108.49  Aligned_cols=58  Identities=14%  Similarity=0.170  Sum_probs=50.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCC-CeEEEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDS-RHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~   68 (118)
                      +++.|++|||||++.     ..+...+.+|.+.+.+++|+|++ ++|++++.|++|++||+++.
T Consensus       161 s~s~D~tv~~Wd~~~-----~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~  219 (393)
T 4gq1_A          161 SVGDDCTLIIWRLTD-----EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN  219 (393)
T ss_dssp             EEETTSEEEEEEEET-----TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred             EEECCCeEEEEECCC-----CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence            788999999999986     56666677799999999999976 57999999999999998753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.70  E-value=3.3e-16  Score=103.57  Aligned_cols=104  Identities=20%  Similarity=0.283  Sum_probs=81.1

Q ss_pred             ccccCceEEEEeCCCCCCC--CCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNET--TAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      +++.|++|++||+......  ...+...+.+|...|.+++|+|++.++++++.|++|++||+++...             
T Consensus        44 sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~  123 (343)
T 2xzm_R           44 SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYS  123 (343)
T ss_dssp             EEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEE
T ss_pred             EEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEE
Confidence            7888999999999752211  1245567889999999999999999999999999999999987543             


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeee--cccCcceeeEeeeeec
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQ--RNTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~  109 (118)
                                ++++.|++|++||++........  ..|...+..+.|++..
T Consensus       124 v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (343)
T 2xzm_R          124 VAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM  174 (343)
T ss_dssp             EEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCC
T ss_pred             EEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccc
Confidence                      78899999999999844332222  2677778888887643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.70  E-value=2.5e-16  Score=102.86  Aligned_cols=98  Identities=17%  Similarity=0.220  Sum_probs=82.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|+.|++||++.     ......+.+|.+.|.+++|+|++++|++++.|++|++||+++...               
T Consensus       190 s~~~d~~i~i~d~~~-----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~  264 (340)
T 4aow_A          190 SCGWDKLVKVWNLAN-----CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF  264 (340)
T ss_dssp             EEETTSCEEEEETTT-----TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             EEcCCCEEEEEECCC-----CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeec
Confidence            567899999999987     677888899999999999999999999999999999999987543               


Q ss_pred             ------cceecCCcEEEEeCCCCcceeee---------cccCcceeeEeeeee
Q psy1285          71 ------AANSKDQTIKLWDVRKFSNKTAQ---------RNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~~~~  108 (118)
                            ++++.|+.|++||++.......+         ..|...|..+.|++.
T Consensus       265 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  317 (340)
T 4aow_A          265 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD  317 (340)
T ss_dssp             CSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT
T ss_pred             CCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC
Confidence                  67788999999999987665433         256677888888754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.70  E-value=4.2e-16  Score=103.69  Aligned_cols=97  Identities=20%  Similarity=0.356  Sum_probs=78.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC--CCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG--DSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      +++.|++|++||+..     .+.+..+.+|...|.+++|+|  +++.|++++.|++|++||+++...             
T Consensus       171 t~s~D~~v~lwd~~~-----~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~  245 (354)
T 2pbi_B          171 TASGDGTCALWDVES-----GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNS  245 (354)
T ss_dssp             EEETTSEEEEEETTT-----CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEeCCCcEEEEeCCC-----CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEE
Confidence            788999999999987     678888999999999999987  578999999999999999986543             


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeecc--cCcceeeEeeee
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQRN--TFRAVCEQNWEY  107 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~  107 (118)
                                ++|+.|++|++||++.......+..  +...+..+.|++
T Consensus       246 v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~  294 (354)
T 2pbi_B          246 VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL  294 (354)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC
Confidence                      7889999999999998876554432  223455555553

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.69  E-value=1.1e-16  Score=107.30  Aligned_cols=97  Identities=14%  Similarity=0.122  Sum_probs=81.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC----------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN----------------   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----------------   69 (118)
                      +++.|++|+|||+..     ......+..|...|.+++|+|++++|++++.|+.+++||+....                
T Consensus        83 s~s~D~~v~iWd~~~-----~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~  157 (380)
T 3iz6_a           83 SASQDGRLIVWNALT-----SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK  157 (380)
T ss_dssp             EEETTSEEEEEETTT-----TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCS
T ss_pred             EEeCCCeEEEEECCC-----CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCC
Confidence            788999999999987     67778889999999999999999999999999999999985311                


Q ss_pred             ---------------ccceecCCcEEEEeCCCCcceeee-----cccCcceeeEeeee
Q psy1285          70 ---------------GAANSKDQTIKLWDVRKFSNKTAQ-----RNTFRAVCEQNWEY  107 (118)
Q Consensus        70 ---------------~~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~  107 (118)
                                     .++|+.|++|++||++++.....+     ..|...+..+.|+.
T Consensus       158 ~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          158 GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence                           078889999999999998876554     35666676666643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.69  E-value=6.8e-16  Score=101.70  Aligned_cols=100  Identities=15%  Similarity=0.201  Sum_probs=77.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeee-cC-ccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC-------Cc------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVL-AG-HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF-------NG------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-------~~------   70 (118)
                      +++.|++|++||+...   .......+ .+ |.+.|.+++|+|++++|++++.|++|++||+...       ..      
T Consensus        29 s~~~D~~i~lw~~~~~---~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~  105 (330)
T 2hes_X           29 TGSTDRKIKLVSVKYD---DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG  105 (330)
T ss_dssp             EEESSSCEEEEECSSS---CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred             EEcCCCEEEEEEecCC---CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence            6788999999999752   12344445 34 9999999999999999999999999999998421       00      


Q ss_pred             -----------------cceecCCcEEEEeCCCC----cceeeecccCcceeeEeeeee
Q psy1285          71 -----------------AANSKDQTIKLWDVRKF----SNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -----------------~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                       ++|+.|++|++||++..    +....+..|...|..+.|++.
T Consensus       106 h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~  164 (330)
T 2hes_X          106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS  164 (330)
T ss_dssp             ---CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC
Confidence                             78899999999999543    234456688888999888764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.69  E-value=5.8e-16  Score=104.02  Aligned_cols=100  Identities=18%  Similarity=0.197  Sum_probs=85.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|+.|++||+..     ......+.+|.+.|.+++|+|++++|++++.|++|++||+++...               
T Consensus       156 s~s~d~~i~iwd~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~  230 (420)
T 3vl1_A          156 SSSQDMQLKIWSVKD-----GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN  230 (420)
T ss_dssp             EEETTSEEEEEETTT-----CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEE
T ss_pred             EEeCCCeEEEEeCCC-----CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCcc
Confidence            678899999999987     677788889999999999999999999999999999999874211               


Q ss_pred             --------------------------------cceecCCcEEEEeCCCCcceeeec-ccCcceeeEeeeeecc
Q psy1285          71 --------------------------------AANSKDQTIKLWDVRKFSNKTAQR-NTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 --------------------------------~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~  110 (118)
                                                      ++|+.|+.|++||+++......+. .|...+..+.|++.-.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  303 (420)
T 3vl1_A          231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNA  303 (420)
T ss_dssp             EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCT
T ss_pred             EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCC
Confidence                                            678889999999999998877765 5778899998876543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.68  E-value=6.1e-16  Score=110.45  Aligned_cols=103  Identities=19%  Similarity=0.252  Sum_probs=81.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|++|++||+.............+.+|.+.|.+++|+|++++|++|+.|++|++||+.+...               
T Consensus       400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~  479 (694)
T 3dm0_A          400 SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVA  479 (694)
T ss_dssp             EEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEE
Confidence            78899999999997632222344567889999999999999999999999999999999976432               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeee---cccCcceeeEeeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQ---RNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~  108 (118)
                              ++++.|++|++||..........   ..|...|.++.|++.
T Consensus       480 ~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          480 FSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred             EeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence                    78899999999998765433221   356777888888654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.67  E-value=7.7e-16  Score=103.43  Aligned_cols=102  Identities=17%  Similarity=0.215  Sum_probs=84.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCC-------c-------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFN-------G-------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~-------~-------   70 (118)
                      +++.||.|+||++..... .......+.+|.+.|.+++|+| ++++|++++.|++|++||+.+..       .       
T Consensus        52 ~~~~~g~i~v~~~~~~~~-~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h  130 (402)
T 2aq5_A           52 EASGGGAFLVLPLGKTGR-VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH  130 (402)
T ss_dssp             CCSSSCCEEEEETTCCEE-CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC
T ss_pred             EEcCCCEEEEEECccCCC-CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC
Confidence            567899999999965211 1134556788999999999999 89999999999999999997651       1       


Q ss_pred             -----------------cceecCCcEEEEeCCCCcceeee--cccCcceeeEeeeee
Q psy1285          71 -----------------AANSKDQTIKLWDVRKFSNKTAQ--RNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -----------------~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~  108 (118)
                                       ++++.|+.|++||+++++....+  ..|...+..+.|++.
T Consensus       131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  187 (402)
T 2aq5_A          131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD  187 (402)
T ss_dssp             SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT
T ss_pred             CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC
Confidence                             67889999999999999988888  678889999999763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.67  E-value=1.3e-16  Score=106.23  Aligned_cols=98  Identities=10%  Similarity=0.048  Sum_probs=74.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCcc---CcEEEEEeCCCCCeE------------EEeeCCCcEEEEecCCCC-
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHR---DGITFIDPKGDSRHL------------ISNSKDQTIKLWDVRKFN-   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l------------~s~~~d~~i~~wd~~~~~-   69 (118)
                      +++.|++|||||+++     ++.+.++.+|.   ..+.+++|+|++..+            ++|+.|+++++||..+.. 
T Consensus       198 SgS~D~TIkIWDl~T-----Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~  272 (356)
T 2w18_A          198 GTTIMNNIVIWNLKT-----GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS  272 (356)
T ss_dssp             EEETTSEEEEEETTT-----CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE
T ss_pred             EecCCCcEEEEECCC-----CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE
Confidence            578899999999998     78888887654   357778899999876            568889999999977542 


Q ss_pred             -------------------------ccceecCCcEEEEeCCCCcceeeecccCccee-eEeeeee
Q psy1285          70 -------------------------GAANSKDQTIKLWDVRKFSNKTAQRNTFRAVC-EQNWEYR  108 (118)
Q Consensus        70 -------------------------~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~  108 (118)
                                               .++++.|++|+|||+++++....+.+|...+. .+.|++.
T Consensus       273 l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD  337 (356)
T 2w18_A          273 VGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT  337 (356)
T ss_dssp             EEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred             EEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence                                     15667899999999999999999887876554 4788865

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.67  E-value=6.2e-16  Score=109.24  Aligned_cols=98  Identities=17%  Similarity=0.189  Sum_probs=83.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeec-------CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLA-------GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------   70 (118)
                      +++.|++|++||+..     ++....+.       +|.+.|.+++|+|++++|++++.|++|++||+++...        
T Consensus       207 s~s~D~~i~lwd~~~-----g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~  281 (611)
T 1nr0_A          207 STGGDGTIVLYNGVD-----GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT  281 (611)
T ss_dssp             EEETTSCEEEEETTT-----CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEECCCcEEEEECCC-----CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCC
Confidence            688999999999976     55555553       7999999999999999999999999999999986421        


Q ss_pred             ----------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ----------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ----------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                      ++++.|+.+++||...+.....+.+|...|..+.|++.
T Consensus       282 ~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd  335 (611)
T 1nr0_A          282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSAD  335 (611)
T ss_dssp             SGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             CccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC
Confidence                            57788999999999988876677788888988888753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.66  E-value=1.4e-15  Score=102.22  Aligned_cols=103  Identities=18%  Similarity=0.250  Sum_probs=82.8

Q ss_pred             ccccCceEEEEeCCCCCCC--CCCceeeecCccCcEEEEEeCCCC-CeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           6 QVASLVTCFVWDRRTLNET--TAKPVGVLAGHRDGITFIDPKGDS-RHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      +++.||+|++||+......  ...+...+.+|.+.|.+++|+|++ +.|++++.|+.|++||+++...            
T Consensus        99 s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  178 (402)
T 2aq5_A           99 SGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT  178 (402)
T ss_dssp             EEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred             EEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence            6788999999999863110  015677888999999999999997 6999999999999999875321            


Q ss_pred             -------------cceecCCcEEEEeCCCCcceeee-cccCcc-eeeEeeeee
Q psy1285          71 -------------AANSKDQTIKLWDVRKFSNKTAQ-RNTFRA-VCEQNWEYR  108 (118)
Q Consensus        71 -------------~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~~~~  108 (118)
                                   ++++.|+.|++||++++.....+ ..|... +..+.|++.
T Consensus       179 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (402)
T 2aq5_A          179 IYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE  231 (402)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST
T ss_pred             eEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC
Confidence                         78889999999999999888777 566654 777777643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.66  E-value=2.2e-16  Score=104.81  Aligned_cols=98  Identities=12%  Similarity=0.194  Sum_probs=75.5

Q ss_pred             ccccCceEEEEeCCCCCCCCC--CceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC---c----------
Q psy1285           6 QVASLVTCFVWDRRTLNETTA--KPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN---G----------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~----------   70 (118)
                      +++.|+.|++||+..     .  .....+.+|.+.|.+++|+|++++|++++.|++|++||+.+..   .          
T Consensus        28 ~~~~d~~i~iw~~~~-----~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~  102 (377)
T 3dwl_C           28 TTTATNQVELYEQDG-----NGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRA  102 (377)
T ss_dssp             CCCSSSCBCEEEEET-----TEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSC
T ss_pred             EecCCCEEEEEEccC-----CceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCc
Confidence            667899999999986     4  5667788999999999999999999999999999999998754   1          


Q ss_pred             -------------cceecCCcEEEEeCCCCcc---eeeecc-cCcceeeEeeeee
Q psy1285          71 -------------AANSKDQTIKLWDVRKFSN---KTAQRN-TFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------------~s~~~d~~i~iwd~~~~~~---~~~~~~-~~~~v~~~~~~~~  108 (118)
                                   ++++.|+.|++||++....   ...+.. |...+..+.|++.
T Consensus       103 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  157 (377)
T 3dwl_C          103 ATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN  157 (377)
T ss_dssp             EEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred             eEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence                         7788999999999998874   556665 8888998888764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.66  E-value=5.5e-16  Score=101.62  Aligned_cols=101  Identities=18%  Similarity=0.149  Sum_probs=81.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC--CCeEEEeeCCCcEEEEecCCCC--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD--SRHLISNSKDQTIKLWDVRKFN--------------   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~--------------   69 (118)
                      +++.|++|++||++.+   .......+.+|.+.|.+++|+|+  +.+|++++.|++|++||++...              
T Consensus        76 s~s~D~~v~iWd~~~~---~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~  152 (316)
T 3bg1_A           76 SCSYDRKVIIWREENG---TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG  152 (316)
T ss_dssp             EEETTSCEEEECCSSS---CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred             EEECCCEEEEEECCCC---cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence            6788999999999862   12455677889999999999997  7899999999999999976420              


Q ss_pred             -----------------------------ccceecCCcEEEEeCCCC---cceeeecccCcceeeEeeeeec
Q psy1285          70 -----------------------------GAANSKDQTIKLWDVRKF---SNKTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        70 -----------------------------~~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~  109 (118)
                                                   .++|+.|++|++||++..   .....+..|...|..+.|++..
T Consensus       153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~  224 (316)
T 3bg1_A          153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI  224 (316)
T ss_dssp             BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCS
T ss_pred             cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCC
Confidence                                         156788999999999765   3445667888899999998753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=2.3e-15  Score=99.41  Aligned_cols=103  Identities=10%  Similarity=0.070  Sum_probs=80.8

Q ss_pred             ccccCceEEEEeCCCC----CCCCCCceeeec-CccCcEEEEEeCC--CCCeEEEeeCCCcEEEEecCCCCc--------
Q psy1285           6 QVASLVTCFVWDRRTL----NETTAKPVGVLA-GHRDGITFIDPKG--DSRHLISNSKDQTIKLWDVRKFNG--------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~----~~~~~~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~--------   70 (118)
                      +++.|++|++|+....    +......+..+. +|.+.|.+++|+|  +++++++++.|++|++||+++...        
T Consensus        90 s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~  169 (343)
T 3lrv_A           90 SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS  169 (343)
T ss_dssp             EECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS
T ss_pred             EecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC
Confidence            6788999999987631    011133333333 6778999999999  999999999999999999986432        


Q ss_pred             ----------------cceecCCcEEEEeCCCCcce-eeecc-cCcceeeEeeeee
Q psy1285          71 ----------------AANSKDQTIKLWDVRKFSNK-TAQRN-TFRAVCEQNWEYR  108 (118)
Q Consensus        71 ----------------~s~~~d~~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~~~~  108 (118)
                                      ++|+.|+.|++||++++... ..+.. |...|..+.|++.
T Consensus       170 ~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~  225 (343)
T 3lrv_A          170 DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN  225 (343)
T ss_dssp             SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTT
T ss_pred             CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCC
Confidence                            67889999999999999887 66776 8899999998754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.66  E-value=1.6e-15  Score=113.55  Aligned_cols=98  Identities=19%  Similarity=0.249  Sum_probs=88.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|++||+..     ...+..+.+|.+.|.+++|+|+++++++++.|+.|++||+.+...               
T Consensus       632 s~~~d~~i~vw~~~~-----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~  706 (1249)
T 3sfz_A          632 SCGADKTLQVFKAET-----GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH  706 (1249)
T ss_dssp             EEETTSCEEEEETTT-----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             EEeCCCeEEEEECCC-----CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEE
Confidence            678899999999987     678888999999999999999999999999999999999986543               


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                ++|+.|+.|++||++++.....+..|...|..+.|++.
T Consensus       707 ~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~  754 (1249)
T 3sfz_A          707 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD  754 (1249)
T ss_dssp             ECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS
T ss_pred             EecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecC
Confidence                      67889999999999999988888889999999888764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.66  E-value=7e-16  Score=104.36  Aligned_cols=95  Identities=17%  Similarity=0.265  Sum_probs=79.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecC--ccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAG--HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      +++.|+.|++||++.     .+++..+.+  |.+.|.+++|+|++++|++++.|+.|++||++....             
T Consensus       187 ~~~~d~~i~iwd~~~-----~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  261 (437)
T 3gre_A          187 ALTNLSRVIIFDIRT-----LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPIT  261 (437)
T ss_dssp             EEETTSEEEEEETTT-----CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEE
T ss_pred             EEeCCCeEEEEeCCC-----CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceE
Confidence            677899999999987     677888887  899999999999999999999999999999976332             


Q ss_pred             ---------------cceecCCcEEEEeCCCCcceeeecccCcceeeEee
Q psy1285          71 ---------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNW  105 (118)
Q Consensus        71 ---------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  105 (118)
                                     ++|+.|+.|++||++++.....+..+...+....|
T Consensus       262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  311 (437)
T 3gre_A          262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHF  311 (437)
T ss_dssp             EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGG
T ss_pred             EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcccee
Confidence                           67788999999999999887777655544443333

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.65  E-value=8.8e-16  Score=100.64  Aligned_cols=100  Identities=18%  Similarity=0.141  Sum_probs=79.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC--CCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG--DSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      +++.|++|+|||+...   ....+..+.+|.+.|.+++|++  ++++|++++.|++|++||+++...             
T Consensus        30 sgs~D~~v~lwd~~~~---~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V  106 (316)
T 3bg1_A           30 TCSSDRSVKIFDVRNG---GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSV  106 (316)
T ss_dssp             EEETTTEEEEEEEETT---EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCC
T ss_pred             EEeCCCeEEEEEecCC---CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCce
Confidence            7789999999999752   1234677889999999999986  489999999999999999975421             


Q ss_pred             --------------cceecCCcEEEEeCCCCcc---eeeecccCcceeeEeeeee
Q psy1285          71 --------------AANSKDQTIKLWDVRKFSN---KTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~  108 (118)
                                    ++|+.|++|++||++....   ...+..|...+..+.|++.
T Consensus       107 ~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A          107 NSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             CEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred             EEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence                          6788899999999987643   2334477777888888765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.65  E-value=3.6e-15  Score=100.13  Aligned_cols=97  Identities=21%  Similarity=0.182  Sum_probs=81.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||.|++||+..     ......+.+|.+.|.+++|+|++++|++++.|+.|++||+++...               
T Consensus       114 ~~~~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  188 (420)
T 3vl1_A          114 LGTTEGDIKVLDSNF-----NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIA  188 (420)
T ss_dssp             EEETTSCEEEECTTS-----CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEE
T ss_pred             EEECCCCEEEEeCCC-----cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEE
Confidence            667899999999986     666777789999999999999999999999999999999986543               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecc---cCcceeeEeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRN---TFRAVCEQNWEY  107 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~  107 (118)
                              ++++.|++|++||+++++....+..   +...+..+.|.+
T Consensus       189 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  236 (420)
T 3vl1_A          189 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFV  236 (420)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEE
T ss_pred             EcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEec
Confidence                    7889999999999999988877653   445566666543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.64  E-value=1.1e-15  Score=100.57  Aligned_cols=83  Identities=22%  Similarity=0.305  Sum_probs=72.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.||.|++||+..     .+.+..+.+|...|.+++|+| ++.+|++++.|+.|++||+++...              
T Consensus        90 ~~~~dg~i~v~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  164 (366)
T 3k26_A           90 VAGSRGIIRIINPIT-----MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV  164 (366)
T ss_dssp             EEETTCEEEEECTTT-----CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE
T ss_pred             EecCCCEEEEEEchh-----ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCce
Confidence            578899999999987     677888889999999999999 899999999999999999975322              


Q ss_pred             ------------cceecCCcEEEEeCCCCcceeee
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSNKTAQ   93 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~~~~~   93 (118)
                                  ++++.|+.|++||+++.+....+
T Consensus       165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  199 (366)
T 3k26_A          165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI  199 (366)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHH
T ss_pred             eEEEECCCCCEEEEecCCCCEEEEECCCCcccccc
Confidence                        77889999999999987665433

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.64  E-value=4.8e-15  Score=104.73  Aligned_cols=95  Identities=12%  Similarity=0.182  Sum_probs=76.5

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      .++.|++|++..     ......+.+|.+.|.+++|+|+|++|++|+.|++|+|||+.+...                  
T Consensus        37 ~~~~v~l~~~~~-----~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~f  111 (611)
T 1nr0_A           37 NGTSVYTVPVGS-----LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW  111 (611)
T ss_dssp             ETTEEEEEETTC-----SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEE
T ss_pred             CCCEEEEecCCC-----cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEE
Confidence            467999999986     677788899999999999999999999999999999999842110                  


Q ss_pred             ----------------------------------------------------cceecCCcEEEEeCCCCcceeeecccCc
Q psy1285          71 ----------------------------------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFR   98 (118)
Q Consensus        71 ----------------------------------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~   98 (118)
                                                                          ++|+.|++|++||.++.+....+.+|..
T Consensus       112 s~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~  191 (611)
T 1nr0_A          112 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK  191 (611)
T ss_dssp             CTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS
T ss_pred             CCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC
Confidence                                                                4566778888888777766666777777


Q ss_pred             ceeeEeeeee
Q psy1285          99 AVCEQNWEYR  108 (118)
Q Consensus        99 ~v~~~~~~~~  108 (118)
                      .|..+.|++.
T Consensus       192 ~V~~v~fspd  201 (611)
T 1nr0_A          192 FVHSVRYNPD  201 (611)
T ss_dssp             CEEEEEECTT
T ss_pred             ceEEEEECCC
Confidence            7777777653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.64  E-value=5.2e-15  Score=100.13  Aligned_cols=97  Identities=18%  Similarity=0.331  Sum_probs=79.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceee--ecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGV--LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      -++.|++|+|||..+     ++....  +.+|...|.+++|+|+|++|++|+.|++|++||+.+...             
T Consensus       120 Avgld~tV~lWd~~t-----g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~  194 (420)
T 4gga_A          120 AVALDNSVYLWSASS-----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS  194 (420)
T ss_dssp             EEEETTEEEEEETTT-----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EEEeCCEEEEEECCC-----CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence            356799999999987     555544  456788899999999999999999999999999987543             


Q ss_pred             --------cceecCCcEEEEeCCCCcce-eeecccCcceeeEeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNK-TAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~  107 (118)
                              ++|+.|+.+++||.+..... ..+..|...+..+.|++
T Consensus       195 ~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~  240 (420)
T 4gga_A          195 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  240 (420)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             EeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence                    78899999999999876654 44567877777777754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.63  E-value=3.9e-15  Score=103.61  Aligned_cols=96  Identities=23%  Similarity=0.331  Sum_probs=81.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|++|++||..      .+.+..+.+|...|.+++|+|++++|++++.|++|++||......               
T Consensus       443 ~~~~d~~v~~w~~~------~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~  516 (577)
T 2ymu_A          443 SASDDKTVKLWNRN------GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF  516 (577)
T ss_dssp             EEETTSEEEEEETT------SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEE
T ss_pred             EEcCCCEEEEEECC------CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEE
Confidence            67889999999975      467778889999999999999999999999999999999643111               


Q ss_pred             -------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                             ++++.|+.|++||. +++....+.+|...|..+.|++.
T Consensus       517 s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~d  560 (577)
T 2ymu_A          517 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD  560 (577)
T ss_dssp             CTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTT
T ss_pred             cCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCC
Confidence                   78899999999995 56777778899999999998754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.63  E-value=3.8e-15  Score=99.58  Aligned_cols=94  Identities=11%  Similarity=0.019  Sum_probs=75.1

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------   70 (118)
                      +.|++|+|||+..     .++...+. |.+.|.+++|+|+++++++++.++ +.+|+..+...                 
T Consensus       154 ~~d~~i~iwd~~~-----~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~  226 (365)
T 4h5i_A          154 KVPAIMRIIDPSD-----LTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKIN  226 (365)
T ss_dssp             CSSCEEEEEETTT-----TEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEE
T ss_pred             CCCCEEEEeECCC-----CcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEE
Confidence            3589999999987     66666665 778899999999999999988655 44444433211                 


Q ss_pred             ----------------------------------------------------------cceecCCcEEEEeCCCCcceee
Q psy1285          71 ----------------------------------------------------------AANSKDQTIKLWDVRKFSNKTA   92 (118)
Q Consensus        71 ----------------------------------------------------------~s~~~d~~i~iwd~~~~~~~~~   92 (118)
                                                                                ++|+.|++|+|||+++++.+..
T Consensus       227 fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~  306 (365)
T 4h5i_A          227 FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI  306 (365)
T ss_dssp             EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE
Confidence                                                                      7889999999999999998887


Q ss_pred             e-cccCcceeeEeeeee
Q psy1285          93 Q-RNTFRAVCEQNWEYR  108 (118)
Q Consensus        93 ~-~~~~~~v~~~~~~~~  108 (118)
                      + .+|...|+.+.|++.
T Consensus       307 ~~~gH~~~V~~v~fSpd  323 (365)
T 4h5i_A          307 FKQAHSFAITEVTISPD  323 (365)
T ss_dssp             ETTSSSSCEEEEEECTT
T ss_pred             ecCcccCCEEEEEECCC
Confidence            6 589999999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.62  E-value=7.5e-15  Score=99.97  Aligned_cols=98  Identities=19%  Similarity=0.355  Sum_probs=86.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeC--CCCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPK--GDSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      +++.||+|++||+..     .+....+.+|.+.|.+++|+  +++.++++++.|++|++||+++...             
T Consensus       178 s~s~dg~i~vwd~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~  252 (464)
T 3v7d_B          178 SGSTDRTVRVWDIKK-----GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV  252 (464)
T ss_dssp             EEETTSCEEEEETTT-----TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred             EEeCCCCEEEEECCC-----CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence            678899999999987     67788889999999999998  5778999999999999999976420             


Q ss_pred             -------------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -------------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                                     ++|+.|+.|++||+++.+....+..|...+..+.|++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  321 (464)
T 3v7d_B          253 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE  321 (464)
T ss_dssp             ESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred             eeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC
Confidence                                           67889999999999999998888889999999999764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.61  E-value=5.3e-15  Score=98.19  Aligned_cols=101  Identities=12%  Similarity=-0.015  Sum_probs=80.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecC-ccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAG-HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN---------------   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---------------   69 (118)
                      +++.|+.|++||++...  .......+.+ |...|.+++|+|++++|++++.|++|++||++...               
T Consensus       117 ~~~~d~~i~iwd~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  194 (377)
T 3dwl_C          117 VGSGARVISVCYFEQEN--DWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLP  194 (377)
T ss_dssp             EEESSSCEEECCC-------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCC
T ss_pred             EEecCCeEEEEEECCcc--cceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccc
Confidence            67789999999998621  0124566777 99999999999999999999999999999984110               


Q ss_pred             -----------c--------------cceecCCcEEEEeCCCCcc----eeeecccCcceeeEeeeee
Q psy1285          70 -----------G--------------AANSKDQTIKLWDVRKFSN----KTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        70 -----------~--------------~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~  108 (118)
                                 .              ++++.|++|++||++++..    ...+..|...+..+.|++.
T Consensus       195 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  262 (377)
T 3dwl_C          195 FNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANE  262 (377)
T ss_dssp             EEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEET
T ss_pred             hhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCC
Confidence                       0              7889999999999999987    6677788888999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.61  E-value=1.6e-14  Score=97.10  Aligned_cols=98  Identities=16%  Similarity=0.251  Sum_probs=81.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecC-ccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAG-HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.|+.|++||+..     +.....+.. |.+.|.+++|+|++.+|++++.||.|++||+.+...              
T Consensus       108 ~~~~d~~v~lw~~~~-----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  182 (401)
T 4aez_A          108 AVALERNVYVWNADS-----GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL  182 (401)
T ss_dssp             EEEETTEEEEEETTT-----CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             EEECCCeEEEeeCCC-----CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE
Confidence            677899999999987     555555553 889999999999999999999999999999986543              


Q ss_pred             -------cceecCCcEEEEeCCCC-cceeeecccCcceeeEeeeee
Q psy1285          71 -------AANSKDQTIKLWDVRKF-SNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~  108 (118)
                             ++++.|+.|++||++.. .....+..|...+..+.|++.
T Consensus       183 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  228 (401)
T 4aez_A          183 SWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD  228 (401)
T ss_dssp             EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred             EECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC
Confidence                   78899999999999954 445566688899999999763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.61  E-value=3.7e-15  Score=104.19  Aligned_cols=102  Identities=13%  Similarity=0.072  Sum_probs=77.4

Q ss_pred             ccccCceEEEEeCCCCCCC------CCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------
Q psy1285           6 QVASLVTCFVWDRRTLNET------TAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------   70 (118)
                      +++.||+|+|||+......      ...+...+.+|...|.+++|+++ ..|++|+.||+|++||+++...         
T Consensus       230 s~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~  308 (524)
T 2j04_B          230 FVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHD  308 (524)
T ss_dssp             EEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSS
T ss_pred             EEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeeccc
Confidence            5788999999999763211      12344577889999999999985 4899999999999999975321         


Q ss_pred             ------------------cceecCCcEEEEeCCCCcceeeecccCc--ceeeEeeeee
Q psy1285          71 ------------------AANSKDQTIKLWDVRKFSNKTAQRNTFR--AVCEQNWEYR  108 (118)
Q Consensus        71 ------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~  108 (118)
                                        ++++.|++|++||+++++....+..|..  .+..+.|++.
T Consensus       309 ~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~  366 (524)
T 2j04_B          309 SYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ  366 (524)
T ss_dssp             SCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT
T ss_pred             ccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCC
Confidence                              6788999999999998877665554432  3566777654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.61  E-value=2.2e-14  Score=95.45  Aligned_cols=100  Identities=15%  Similarity=0.188  Sum_probs=83.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceee---------------ecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGV---------------LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~---------------~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      +++.||.|++||++...    .....               ..+|...|.+++|+|++++|++++.|+.|++||+++...
T Consensus       204 ~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          204 TASADSRVKLWDVRRAS----GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN  279 (408)
T ss_dssp             EEETTSCEEEEETTCSS----CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred             EEcCCCcEEEEECCCCC----cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence            67789999999998631    12222               257889999999999999999999999999999986432


Q ss_pred             ----------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeec
Q psy1285          71 ----------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 ----------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  109 (118)
                                                  +.++.++.|++||+.++.....+..|...|..+.|++.-
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~  346 (408)
T 4a11_B          280 TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF  346 (408)
T ss_dssp             CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT
T ss_pred             ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC
Confidence                                        556789999999999999999998999999999998653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.61  E-value=1.2e-14  Score=98.76  Aligned_cols=103  Identities=24%  Similarity=0.454  Sum_probs=82.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCC-eEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSR-HLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.||.|++||++...  ...+...+..|...|.+++|+|++. .+++++.|+.|++||+++...              
T Consensus       249 s~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~  326 (430)
T 2xyi_A          249 SVADDQKLMIWDTRNNN--TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ  326 (430)
T ss_dssp             EEETTSEEEEEETTCSC--SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEE
T ss_pred             EEeCCCeEEEEECCCCC--CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEE
Confidence            67789999999998631  1256677788999999999999887 688999999999999987432              


Q ss_pred             -----------cceecCCcEEEEeCCCC--------------cceeeecccCcceeeEeeeeecc
Q psy1285          71 -----------AANSKDQTIKLWDVRKF--------------SNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                                 ++++.|+.|++||++..              ........|...+..+.|++.-+
T Consensus       327 i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  391 (430)
T 2xyi_A          327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  391 (430)
T ss_dssp             EEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST
T ss_pred             EEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC
Confidence                       67888999999999872              33445557888899999987644

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.60  E-value=1.3e-14  Score=94.32  Aligned_cols=102  Identities=21%  Similarity=0.199  Sum_probs=79.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCC--CCCeEEEeeCCCcEEEEecCCCC---------c----
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG--DSRHLISNSKDQTIKLWDVRKFN---------G----   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~---------~----   70 (118)
                      +++.||.|++||+.... ........+.+|.+.|.+++|+|  ++.+|++++.|+.|++||++...         .    
T Consensus        28 ~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  106 (351)
T 3f3f_A           28 TCSSDQHIKVFKLDKDT-SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL  106 (351)
T ss_dssp             EEETTSEEEEEEECSSS-CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE
T ss_pred             EeeCCCeEEEEECCCCC-CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee
Confidence            67889999999998621 11145667788999999999999  59999999999999999997642         0    


Q ss_pred             ---------------------cceecCCcEEEEeCCCCcceeeec-------------ccCcceeeEeeeee
Q psy1285          71 ---------------------AANSKDQTIKLWDVRKFSNKTAQR-------------NTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ---------------------~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~~  108 (118)
                                           ++++.|+.|++||+++......+.             .+...+..+.|++.
T Consensus       107 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  178 (351)
T 3f3f_A          107 NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS  178 (351)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCC
T ss_pred             cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccC
Confidence                                 677889999999999887654322             45566777777654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.60  E-value=5.2e-15  Score=106.47  Aligned_cols=97  Identities=14%  Similarity=0.127  Sum_probs=84.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||.|+|||+..     +.....+.+|.+.|.+++|+|+++.|++++.|+.|++||+.+...               
T Consensus        30 ~~~~~g~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~  104 (814)
T 3mkq_A           30 TTLYSGRVEIWNYET-----QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA  104 (814)
T ss_dssp             EEETTSEEEEEETTT-----TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             EEeCCCEEEEEECCC-----CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEE
Confidence            567799999999987     677888889999999999999999999999999999999986543               


Q ss_pred             --------cceecCCcEEEEeCCCC-cceeeecccCcceeeEeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKF-SNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~  107 (118)
                              ++++.|+.|++||+.+. .....+..|...+..+.|++
T Consensus       105 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p  150 (814)
T 3mkq_A          105 VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP  150 (814)
T ss_dssp             ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET
T ss_pred             EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc
Confidence                    77889999999999987 44556668888999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2.6e-14  Score=93.92  Aligned_cols=58  Identities=29%  Similarity=0.416  Sum_probs=53.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      +++.||.|++||+..     .+....+.+|.+.|.+++|+|++++|++++.|+.|++||+.+.
T Consensus        49 ~~~~dg~i~vwd~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  106 (369)
T 3zwl_B           49 SCSKDSSASVWYSLN-----GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG  106 (369)
T ss_dssp             EEESSSCEEEEETTT-----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             EEeCCCEEEEEeCCC-----chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            667899999999987     6788889999999999999999999999999999999998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.60  E-value=4.1e-14  Score=92.04  Aligned_cols=98  Identities=17%  Similarity=0.222  Sum_probs=80.6

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeec--CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc----------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLA--GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----------------   70 (118)
                      .||.|++||+.....  ......+.  +|...|.+++|+|+++++++++.|+.|++||+.+...                
T Consensus        70 ~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~  147 (337)
T 1gxr_A           70 GKGCVKVWDISHPGN--KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL  147 (337)
T ss_dssp             CBSEEEEEETTSTTC--CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEE
T ss_pred             CCCeEEEEECCCCCc--eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEE
Confidence            399999999986322  22333333  7899999999999999999999999999999987542                


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                               ++++.|+.|++||+++.+....+..|...+..+.|++.
T Consensus       148 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~  194 (337)
T 1gxr_A          148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCC
Confidence                     67888999999999999888888888888999988764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.59  E-value=1.9e-14  Score=98.03  Aligned_cols=96  Identities=25%  Similarity=0.335  Sum_probs=79.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|+.|++||++.     ..++..+.+|.+.|.+++|+|+++.+++++.|+.|++||+++...               
T Consensus       285 ~~~~d~~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  359 (464)
T 3v7d_B          285 SGSYDNTLIVWDVAQ-----MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR  359 (464)
T ss_dssp             EEETTSCEEEEETTT-----TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEeCCCeEEEEECCC-----CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence            567899999999987     778888899999999999999999999999999999999986543               


Q ss_pred             ------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 ------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                            ++++.|++|++||+++........ +...+..+.|++
T Consensus       360 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~  401 (464)
T 3v7d_B          360 LSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV  401 (464)
T ss_dssp             ECSSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE
T ss_pred             EcCCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe
Confidence                  788999999999999887655443 333444444543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.59  E-value=3.3e-14  Score=95.60  Aligned_cols=101  Identities=19%  Similarity=0.303  Sum_probs=83.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||.|++||++..    ......+.+|.+.|.+++|+|++++|++++.|+.|++||+++...               
T Consensus       191 ~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~  266 (401)
T 4aez_A          191 SGSRSGAIHHHDVRIA----NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA  266 (401)
T ss_dssp             EEETTSEEEEEETTSS----SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEE
T ss_pred             EEcCCCCEEEEecccC----cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEE
Confidence            6778999999999842    566777889999999999999999999999999999999986433               


Q ss_pred             ---------ccee--cCCcEEEEeCCCCcceeeecccCcceeeEeeeeeccc
Q psy1285          71 ---------AANS--KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        71 ---------~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  111 (118)
                               ++++  .|+.|++||++++.....+. +...+..+.|++....
T Consensus       267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~  317 (401)
T 4aez_A          267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKE  317 (401)
T ss_dssp             ECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSE
T ss_pred             ECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCe
Confidence                     4433  79999999999998877775 5567888888765443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.59  E-value=3.4e-14  Score=96.43  Aligned_cols=94  Identities=26%  Similarity=0.415  Sum_probs=80.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||.|++||+..     .+....+.+|.+.|.+++|  +++.+++|+.||+|++||+.+...               
T Consensus       148 ~g~~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~  220 (435)
T 1p22_A          148 SGLRDNTIKIWDKNT-----LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR  220 (435)
T ss_dssp             EEESSSCEEEEESSS-----CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEE
T ss_pred             EEeCCCeEEEEeCCC-----CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEE
Confidence            678899999999987     6788889999999999999  688999999999999999987543               


Q ss_pred             ------cceecCCcEEEEeCCCCcce---eeecccCcceeeEeee
Q psy1285          71 ------AANSKDQTIKLWDVRKFSNK---TAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~  106 (118)
                            ++|+.|+.|++||+++....   ..+..|...+..+.|+
T Consensus       221 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  265 (435)
T 1p22_A          221 FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD  265 (435)
T ss_dssp             CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE
T ss_pred             EcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC
Confidence                  78899999999999988765   4455788888887774

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.59  E-value=2e-14  Score=95.66  Aligned_cols=100  Identities=18%  Similarity=0.253  Sum_probs=82.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeee-------------cCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc-
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVL-------------AGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG-   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~-------------~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~-   70 (118)
                      +++.||.|++||+...     .....+             .+|...|.+++|+| ++.++++++.|+.|++||+.+... 
T Consensus        61 ~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  135 (408)
T 4a11_B           61 SGGSDGVIVLYDLENS-----SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA  135 (408)
T ss_dssp             EEETTSCEEEEECCCC-----SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE
T ss_pred             EEcCCCeEEEEECCCC-----cccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc
Confidence            6778999999999863     222211             25999999999999 788999999999999999986432 


Q ss_pred             ------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecc
Q psy1285          71 ------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 ------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                                              ++++.|+.|++||++++.....+..|...+..+.|++.-.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  199 (408)
T 4a11_B          136 DVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD  199 (408)
T ss_dssp             EEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred             eeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC
Confidence                                    6778899999999999988888888999999999987644

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.59  E-value=1.4e-14  Score=96.35  Aligned_cols=82  Identities=13%  Similarity=0.112  Sum_probs=65.6

Q ss_pred             cccCceEEEEeCCCCCC----------CCCCc-eeeecCccCcEEEEEeCCCCCeEEEeeCCCc-EEEEecCCCCc----
Q psy1285           7 VASLVTCFVWDRRTLNE----------TTAKP-VGVLAGHRDGITFIDPKGDSRHLISNSKDQT-IKLWDVRKFNG----   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~----------~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~----   70 (118)
                      .+.||.|++||++....          ....+ ...+.+|.+.|.+++|+|++++|++++.|++ |++||+++...    
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            46789999999986210          00113 6778899999999999999999999999998 99999985432    


Q ss_pred             ---------------------cceecCCcEEEEeCCCCc
Q psy1285          71 ---------------------AANSKDQTIKLWDVRKFS   88 (118)
Q Consensus        71 ---------------------~s~~~d~~i~iwd~~~~~   88 (118)
                                           ++++.|++|++||++...
T Consensus       235 ~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          235 RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             ECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             EcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence                                 788999999999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=1.3e-14  Score=95.73  Aligned_cols=100  Identities=17%  Similarity=0.175  Sum_probs=82.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC--CCeEEEeeCCCcEEEEecCCCC--c-----------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD--SRHLISNSKDQTIKLWDVRKFN--G-----------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~--~-----------   70 (118)
                      +++.||.|+|||+...   .......+.+|.+.|.+++|+++  +++|++++.|+.|++||+.+..  .           
T Consensus        28 ~~~~dg~i~iw~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v  104 (379)
T 3jrp_A           28 TCSSDKTIKIFEVEGE---THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV  104 (379)
T ss_dssp             EEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred             EEECCCcEEEEecCCC---cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcce
Confidence            6678999999999731   25667788899999999999976  8999999999999999998653  1           


Q ss_pred             --------------cceecCCcEEEEeCCCCcce--eeecccCcceeeEeeeee
Q psy1285          71 --------------AANSKDQTIKLWDVRKFSNK--TAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~  108 (118)
                                    ++++.|+.|++||++.....  ..+..|...+..+.|++.
T Consensus       105 ~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A          105 NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             EEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred             EEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence                          67788999999999988543  344578888999999874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.58  E-value=1.6e-14  Score=96.27  Aligned_cols=99  Identities=14%  Similarity=0.109  Sum_probs=81.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeee--cCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVL--AGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      +++.||.|+|||+..     ......+  .+|.+.|.+++|+| ++++|++++.|+.|++||++....            
T Consensus        91 s~~~dg~i~iwd~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  165 (383)
T 3ei3_B           91 VGSKGGDIILWDYDV-----QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYW  165 (383)
T ss_dssp             EEEBTSCEEEEETTS-----TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCC
T ss_pred             EEcCCCeEEEEeCCC-----cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCC
Confidence            677899999999986     4444444  36999999999999 789999999999999999874211            


Q ss_pred             -------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecc
Q psy1285          71 -------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 -------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                                   ++++.|+.|++||++ ......+..|...|..+.|++.-.
T Consensus       166 v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~  217 (383)
T 3ei3_B          166 YCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD  217 (383)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT
T ss_pred             eEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC
Confidence                         778899999999994 666677778889999999987644

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=2.1e-14  Score=94.82  Aligned_cols=83  Identities=17%  Similarity=0.021  Sum_probs=66.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeec-CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLA-GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.||+|++||++.     ........ .|...+.+++|+|++.++++|+.|+.|++||+++...              
T Consensus       144 s~s~dg~i~~wd~~~-----~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~  218 (343)
T 3lrv_A          144 WADNRGTIGFQSYED-----DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIK  218 (343)
T ss_dssp             EEETTCCEEEEESSS-----SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEE
T ss_pred             EEeCCCcEEEEECCC-----CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEE
Confidence            678899999999987     45554443 4566899999999999999999999999999976432              


Q ss_pred             -----------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                                 ++++ |+.|++||+++......+.
T Consensus       219 ~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~  252 (343)
T 3lrv_A          219 EVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP  252 (343)
T ss_dssp             EEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC
T ss_pred             EEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec
Confidence                       5566 5699999999987765443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=3e-14  Score=94.03  Aligned_cols=98  Identities=12%  Similarity=0.248  Sum_probs=82.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCC--ceeeecCccCcEEEEEeCCC--CCeEEEeeCCCcEEEEecCCCCc-----------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAK--PVGVLAGHRDGITFIDPKGD--SRHLISNSKDQTIKLWDVRKFNG-----------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~-----------   70 (118)
                      +++.||.|++||+..     ..  ....+..|...|.+++|+|+  +.++++++.|+.|++||++....           
T Consensus        74 s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  148 (379)
T 3jrp_A           74 SCSYDGKVLIWKEEN-----GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  148 (379)
T ss_dssp             EEETTSCEEEEEEET-----TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred             EeccCCEEEEEEcCC-----CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence            678899999999986     33  66777889999999999998  99999999999999999976421           


Q ss_pred             ---------------------------cceecCCcEEEEeCCCCcce----eeecccCcceeeEeeeee
Q psy1285          71 ---------------------------AANSKDQTIKLWDVRKFSNK----TAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ---------------------------~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~  108 (118)
                                                 ++++.|+.|++||++.....    ..+..|...+..+.|++.
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  217 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  217 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCC
Confidence                                       56778999999999877643    345578888999999876

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.58  E-value=8e-15  Score=99.18  Aligned_cols=102  Identities=14%  Similarity=0.127  Sum_probs=80.7

Q ss_pred             ccccCceEEEEeCCCCCCCC-CCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC----------------
Q psy1285           6 QVASLVTCFVWDRRTLNETT-AKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF----------------   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~----------------   68 (118)
                      +++.||+|+|||+....... ......+ +|.+.|.+++|+|++.+|++++.|++|++||+...                
T Consensus        81 s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~  159 (437)
T 3gre_A           81 TGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK  159 (437)
T ss_dssp             EEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence            67899999999987511111 2223333 48999999999999999999999999999998410                


Q ss_pred             ---------------------Cc---cceecCCcEEEEeCCCCcceeeecc--cCcceeeEeeeee
Q psy1285          69 ---------------------NG---AANSKDQTIKLWDVRKFSNKTAQRN--TFRAVCEQNWEYR  108 (118)
Q Consensus        69 ---------------------~~---~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~  108 (118)
                                           ..   ++++.|+.|++||+++.+....+..  |...|..+.|++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~  225 (437)
T 3gre_A          160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE  225 (437)
T ss_dssp             EEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT
T ss_pred             EEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC
Confidence                                 01   7788999999999999999888876  7888999988754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.57  E-value=3.7e-14  Score=96.35  Aligned_cols=93  Identities=25%  Similarity=0.362  Sum_probs=79.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|++||+..     .+....+.+|.+.|.++.|+  +..+++++.|++|++||+.+...               
T Consensus       134 sg~~dg~i~vwd~~~-----~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  206 (445)
T 2ovr_B          134 SGSDDNTLKVWSAVT-----GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH  206 (445)
T ss_dssp             EEETTSCEEEEETTT-----CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEECCCcEEEEECCC-----CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEE
Confidence            678899999999987     67788888999999999997  56899999999999999876432               


Q ss_pred             ------cceecCCcEEEEeCCCCcceeeecccCcceeeEee
Q psy1285          71 ------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNW  105 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  105 (118)
                            ++|+.|++|++||+++++....+..|...+..+.|
T Consensus       207 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  247 (445)
T 2ovr_B          207 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY  247 (445)
T ss_dssp             EETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred             ecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence                  77888999999999988888777788888887776

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.57  E-value=7.5e-14  Score=94.77  Aligned_cols=94  Identities=22%  Similarity=0.369  Sum_probs=79.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|++||+..     .+....+.+|.+.|.+++|++  ..+++++.|+.|++||+++...               
T Consensus       188 sg~~dg~i~vwd~~~-----~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  260 (435)
T 1p22_A          188 TGSSDSTVRVWDVNT-----GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  260 (435)
T ss_dssp             EEETTSCEEEEESSS-----CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred             EEcCCCeEEEEECCC-----CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence            678899999999987     677888889999999999974  5899999999999999976432               


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                               ++|+.|+.|++||++++.....+..|...+..+.|+
T Consensus       261 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  305 (435)
T 1p22_A          261 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR  305 (435)
T ss_dssp             EEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC
Confidence                     677889999999999888888888888888877774

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.57  E-value=6.6e-14  Score=90.33  Aligned_cols=95  Identities=17%  Similarity=0.102  Sum_probs=81.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||.|++||+..     ......+..|.+.|.+++|+|+++++++++.|+.+++|++.....               
T Consensus        34 s~~~dg~v~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~  108 (313)
T 3odt_A           34 SVSRDGTVRLWSKDD-----QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVC  108 (313)
T ss_dssp             EEETTSEEEEEEESS-----SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEE
T ss_pred             EEEcCCcEEEEECCC-----CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEE
Confidence            678899999999976     666777888999999999999999999999999999999876431               


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                               ++++.|+.|++||  .......+..|...+..+.|.+
T Consensus       109 ~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~  152 (313)
T 3odt_A          109 SLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVS  152 (313)
T ss_dssp             EEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEE
T ss_pred             EEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEcc
Confidence                     7788999999999  5556666678888888888876

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.57  E-value=7.1e-14  Score=94.95  Aligned_cols=105  Identities=21%  Similarity=0.360  Sum_probs=83.2

Q ss_pred             ccccCceEEEEeCCCCCCC--CCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCCC---c---------
Q psy1285           6 QVASLVTCFVWDRRTLNET--TAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKFN---G---------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~---~---------   70 (118)
                      +++.||.|++||+......  ...+...+.+|...|.+++|+| ++..+++++.|+.|++||+++..   .         
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence            5678999999999862110  0122456678999999999999 67889999999999999998752   1         


Q ss_pred             ---------------cceecCCcEEEEeCCCC-cceeeecccCcceeeEeeeeecc
Q psy1285          71 ---------------AANSKDQTIKLWDVRKF-SNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 ---------------~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                                     ++|+.|+.|++||++.. .....+..|...+..+.|++.-.
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~  334 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE  334 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC
Confidence                           68899999999999985 44566668888999999987543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.57  E-value=4.7e-14  Score=94.22  Aligned_cols=98  Identities=19%  Similarity=0.312  Sum_probs=86.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++.||.|++||++.     ..+...+..|...|.+++|+|++++|++++.|+.|++||+++...               
T Consensus       222 ~~~~~g~i~~~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~  296 (425)
T 1r5m_A          222 IPGPKGAIFVYQITE-----KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS  296 (425)
T ss_dssp             EECGGGCEEEEETTC-----SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEE
T ss_pred             EEcCCCeEEEEEcCC-----CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEE
Confidence            567789999999987     677777888999999999999999999999999999999986543               


Q ss_pred             -------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                             ++++.|+.|++||+++......+..|...+..+.|++.
T Consensus       297 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  341 (425)
T 1r5m_A          297 WVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD  341 (425)
T ss_dssp             EETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTT
T ss_pred             ECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCC
Confidence                   67888999999999999988888888888999888764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.57  E-value=4e-14  Score=94.30  Aligned_cols=98  Identities=13%  Similarity=0.133  Sum_probs=84.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecC---c---cCcEEEEEeCCCCCeEEEeeCC---CcEEEEecCCCC-------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAG---H---RDGITFIDPKGDSRHLISNSKD---QTIKLWDVRKFN-------   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---h---~~~v~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~-------   69 (118)
                      +++.|+.|++||++.     ..++..+..   |   ...|.+++|+|++++|++++.|   +.|++||+++..       
T Consensus       202 ~~~~dg~i~i~d~~~-----~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~  276 (397)
T 1sq9_A          202 TGFNNGTVQISELST-----LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV  276 (397)
T ss_dssp             EECTTSEEEEEETTT-----TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred             EEeCCCcEEEEECCC-----CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceecc
Confidence            567799999999987     677788888   8   9999999999999999999999   999999986421       


Q ss_pred             -------------c----------------cceecCCcEEEEeCCCCcceeeec------cc---------------Ccc
Q psy1285          70 -------------G----------------AANSKDQTIKLWDVRKFSNKTAQR------NT---------------FRA   99 (118)
Q Consensus        70 -------------~----------------~s~~~d~~i~iwd~~~~~~~~~~~------~~---------------~~~   99 (118)
                                   .                ++++.|+.|++||+++.+....+.      .|               ...
T Consensus       277 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  356 (397)
T 1sq9_A          277 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  356 (397)
T ss_dssp             C--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCc
Confidence                         1                778899999999999999888887      67               888


Q ss_pred             eeeEeeeee
Q psy1285         100 VCEQNWEYR  108 (118)
Q Consensus       100 v~~~~~~~~  108 (118)
                      |..+.|++.
T Consensus       357 v~~~~~~~~  365 (397)
T 1sq9_A          357 VFDVKFLKK  365 (397)
T ss_dssp             EEEEEEECT
T ss_pred             eeEEEeccc
Confidence            999999876

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.57  E-value=5.2e-14  Score=92.43  Aligned_cols=89  Identities=18%  Similarity=0.212  Sum_probs=73.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||.|++||+...   .......+.+|.+.|.+++|+|++++|++++.|+.|++||+.+...               
T Consensus        59 ~~~~dg~i~iw~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~  135 (368)
T 3mmy_A           59 AGSWANDVRCWEVQDS---GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHW  135 (368)
T ss_dssp             EEETTSEEEEEEECTT---SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             EECCCCcEEEEEcCCC---CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEE
Confidence            5678999999999852   1333367788999999999999999999999999999999986443               


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeecccC
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNTF   97 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~~   97 (118)
                               ++++.|+.|++||+++.+....+..+.
T Consensus       136 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  171 (368)
T 3mmy_A          136 IKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE  171 (368)
T ss_dssp             EECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS
T ss_pred             EeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC
Confidence                     778889999999999988777665443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.56  E-value=6.4e-14  Score=91.12  Aligned_cols=97  Identities=24%  Similarity=0.342  Sum_probs=83.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||.|++||++.     .+....+.+|.+.+.+++|+|+++.+++++.|+.|++||+++...               
T Consensus       158 ~~~~dg~v~~~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~  232 (337)
T 1gxr_A          158 SCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGY  232 (337)
T ss_dssp             EEETTSCEEEEETTT-----TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             EEeCCCcEEEEeCCC-----CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEE
Confidence            567899999999987     677788888999999999999999999999999999999986543               


Q ss_pred             -------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                             ++++.++.|++||++..... .+..|...+..+.|++.
T Consensus       233 s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~  276 (337)
T 1gxr_A          233 CPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYC  276 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTT
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCC
Confidence                   67788999999999987654 55578888888888754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.1e-13  Score=90.97  Aligned_cols=99  Identities=12%  Similarity=0.030  Sum_probs=85.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||.|++||++..    ......+..|...|.+++|+|++++|++++.|+.|++||+++...               
T Consensus       192 ~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~  267 (369)
T 3zwl_B          192 AGHKDGKISKYDVSNN----YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVI  267 (369)
T ss_dssp             EEETTSEEEEEETTTT----TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred             EEcCCCEEEEEECCCC----cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEe
Confidence            5678999999999862    466777888999999999999999999999999999999987543               


Q ss_pred             -------cceecCC--------------cEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -------AANSKDQ--------------TIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------~s~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                             ++++.++              .+++||..+......+..|...|..+.|++.
T Consensus       268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~  326 (369)
T 3zwl_B          268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQ  326 (369)
T ss_dssp             CSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCC
Confidence                   4555555              8999999999999888889999999999764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.56  E-value=3.5e-14  Score=95.04  Aligned_cols=103  Identities=13%  Similarity=0.256  Sum_probs=84.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC-CCeEEEeeCCCcEEEEecCCCC------c--------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD-SRHLISNSKDQTIKLWDVRKFN------G--------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~------~--------   70 (118)
                      +++.||.|++||+..... .......+.+|.+.|.+++|+|+ +++|++++.|+.|++||+.+..      .        
T Consensus        84 ~~~~dg~v~vw~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  162 (416)
T 2pm9_A           84 GALDNGSLELYSTNEANN-AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM  162 (416)
T ss_dssp             EEESSSCEEEECCSSTTS-CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred             EEccCCeEEEeecccccc-cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc
Confidence            567899999999975211 12467778899999999999998 8999999999999999997654      1        


Q ss_pred             -------------------cceecCCcEEEEeCCCCcceeeeccc------CcceeeEeeeeec
Q psy1285          71 -------------------AANSKDQTIKLWDVRKFSNKTAQRNT------FRAVCEQNWEYRR  109 (118)
Q Consensus        71 -------------------~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~  109 (118)
                                         ++++.|+.|++||+++.+....+..+      ...+..+.|++.-
T Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (416)
T 2pm9_A          163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN  226 (416)
T ss_dssp             CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred             CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence                               67788999999999999888777654      6778888887653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.56  E-value=2.6e-14  Score=94.30  Aligned_cols=98  Identities=15%  Similarity=0.226  Sum_probs=80.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCC--ceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAK--PVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      +++.|+.|++||+..     .+  ....+.+|...|.+++|+|++++|++++.|+.|++||+.+...             
T Consensus        25 ~~~~d~~v~i~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v   99 (372)
T 1k8k_C           25 ICPNNHEVHIYEKSG-----NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAA   99 (372)
T ss_dssp             EECSSSEEEEEEEET-----TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCE
T ss_pred             EEeCCCEEEEEeCCC-----CcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCce
Confidence            566899999999986     44  7788889999999999999999999999999999999876431             


Q ss_pred             ------------cceecCCcEEEEeCCCCcc---eeee-cccCcceeeEeeeee
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSN---KTAQ-RNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~---~~~~-~~~~~~v~~~~~~~~  108 (118)
                                  ++++.|+.|++||++....   ...+ ..|...+..+.|++.
T Consensus       100 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  153 (372)
T 1k8k_C          100 RCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  153 (372)
T ss_dssp             EEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             eEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC
Confidence                        7788899999999998774   2233 366778888888753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.56  E-value=3.2e-14  Score=96.70  Aligned_cols=85  Identities=18%  Similarity=0.300  Sum_probs=70.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCC-eEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSR-HLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.||.|++||++.      ..+..+.+|.+.|.+++|+|++. ++++++.|++|++||+++...              
T Consensus       226 ~g~~dg~i~~wd~~~------~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v  299 (435)
T 4e54_B          226 TGDNVGNVILLNMDG------KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV  299 (435)
T ss_dssp             EECSSSBEEEEESSS------CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCE
T ss_pred             EEeCCCcEeeeccCc------ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccc
Confidence            567899999999973      45667789999999999999875 678999999999999976432              


Q ss_pred             ------------cceecCCcEEEEeCCCCcceeeeccc
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSNKTAQRNT   96 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~~~~~~~~   96 (118)
                                  ++++.|++|++||++++.....+..|
T Consensus       300 ~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~  337 (435)
T 4e54_B          300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH  337 (435)
T ss_dssp             EECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCC
T ss_pred             cceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecc
Confidence                        78899999999999998876655433

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.56  E-value=6.5e-14  Score=97.45  Aligned_cols=96  Identities=23%  Similarity=0.316  Sum_probs=81.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|+.|++||..      .+.+..+.+|...|.+++|+|++++|++++.|++|++||......               
T Consensus       402 ~~~~d~~v~~~~~~------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~  475 (577)
T 2ymu_A          402 SASDDKTVKLWNRN------GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF  475 (577)
T ss_dssp             EEETTSEEEEECTT------CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEE
T ss_pred             EEeCCCEEEEEeCC------CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEE
Confidence            57789999999964      567778889999999999999999999999999999999753211               


Q ss_pred             -------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                             ++++.|++|++||. +++....+..|...|+.+.|++.
T Consensus       476 spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~d  519 (577)
T 2ymu_A          476 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD  519 (577)
T ss_dssp             CTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT
T ss_pred             cCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCC
Confidence                   77889999999995 56777788889999999998754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.55  E-value=8.6e-14  Score=94.55  Aligned_cols=94  Identities=27%  Similarity=0.411  Sum_probs=74.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||.|++||++.     ...+..+.+|...|.++.|  ++.++++++.|+.|++||+++...               
T Consensus       254 ~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~  326 (445)
T 2ovr_B          254 SGAYDFMVKVWDPET-----ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME  326 (445)
T ss_dssp             EEETTSCEEEEEGGG-----TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred             EEcCCCEEEEEECCC-----CcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE
Confidence            566788888888876     6677777888888888888  677888888889999998876543               


Q ss_pred             ------cceecCCcEEEEeCCCCcceeeecc---cCcceeeEeee
Q psy1285          71 ------AANSKDQTIKLWDVRKFSNKTAQRN---TFRAVCEQNWE  106 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~  106 (118)
                            ++|+.|+.|++||+++++....+..   |...+..+.|+
T Consensus       327 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  371 (445)
T 2ovr_B          327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN  371 (445)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC
T ss_pred             EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC
Confidence                  6778899999999988887776654   66778777775

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.55  E-value=8.5e-14  Score=91.28  Aligned_cols=96  Identities=24%  Similarity=0.431  Sum_probs=79.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCC-ceeeecCccCcEEEE------EeCCCCCeEEEeeCCCcEEEEecCCCC-c-------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAK-PVGVLAGHRDGITFI------DPKGDSRHLISNSKDQTIKLWDVRKFN-G-------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~h~~~v~~~------~~~~~~~~l~s~~~d~~i~~wd~~~~~-~-------   70 (118)
                      +++.||.|++||+..     .. +...+.+|.+.|.++      +|+|++++|++++.|+.|++||+++.. .       
T Consensus        85 ~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  159 (357)
T 3i2n_A           85 TGDFGGNLHIWNLEA-----PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV  159 (357)
T ss_dssp             EEETTSCEEEECTTS-----CSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred             EecCCCeEEEEeCCC-----CCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence            567899999999987     44 777888999999999      457899999999999999999998643 1       


Q ss_pred             ------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 ------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                                              ++++.|+.|++||+++...... ..+...+..+.|++
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~  219 (357)
T 3i2n_A          160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDR  219 (357)
T ss_dssp             TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred             CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCC
Confidence                                    5678899999999999886433 45777888888876

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.54  E-value=5.5e-14  Score=92.34  Aligned_cols=98  Identities=10%  Similarity=0.141  Sum_probs=79.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecC-----ccCcEEEEEeCCC----CCeEEEeeCCCcEEEEecCCCCc------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAG-----HRDGITFIDPKGD----SRHLISNSKDQTIKLWDVRKFNG------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~----~~~l~s~~~d~~i~~wd~~~~~~------   70 (118)
                      .++.++.|++||+..     ...+..+..     |.+.|.+++|+|+    +++|++++.|+.|++||+.+...      
T Consensus        39 ~~~~~~~v~vw~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  113 (366)
T 3k26_A           39 ATVGSNRVTLYECHS-----QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG  113 (366)
T ss_dssp             EEEETTEEEEEEECG-----GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES
T ss_pred             EECCCCEEEEEEcCC-----CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC
Confidence            445678999999986     444444443     5578999999998    67899999999999999986543      


Q ss_pred             ------------------cceecCCcEEEEeCCCCcceeee---cccCcceeeEeeeee
Q psy1285          71 ------------------AANSKDQTIKLWDVRKFSNKTAQ---RNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ------------------~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~  108 (118)
                                        ++++.|+.|++||+++++....+   ..|...+..+.|++.
T Consensus       114 ~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A          114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence                              77889999999999999888777   578889999999764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.54  E-value=5.1e-14  Score=101.73  Aligned_cols=100  Identities=17%  Similarity=0.165  Sum_probs=82.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC--CCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD--SRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      +++.||.|++||+...   .......+.+|.+.|.+++|+++  ++.+++++.||.|++||+.+...             
T Consensus        26 tg~~dg~I~vwd~~~~---~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V  102 (753)
T 3jro_A           26 TCSSDKTIKIFEVEGE---THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV  102 (753)
T ss_dssp             EEETTTEEEEEEEETT---EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred             EEECCCcEEEEecCCC---CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCe
Confidence            6778999999999741   25667788899999999999987  99999999999999999876531             


Q ss_pred             --------------cceecCCcEEEEeCCCCcce--eeecccCcceeeEeeeee
Q psy1285          71 --------------AANSKDQTIKLWDVRKFSNK--TAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~  108 (118)
                                    ++|+.|+.|++||++.....  ..+..|...+..+.|++.
T Consensus       103 ~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A          103 NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             EEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred             EEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence                          67888999999999988443  344578888999999874

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.54  E-value=4.7e-14  Score=96.47  Aligned_cols=102  Identities=12%  Similarity=0.036  Sum_probs=74.4

Q ss_pred             ccccCceEEEEeCCCCCCC---CCC---ceeeecCccCcEEEEEeCCC-CCeEEEeeCCCcEEEEecCCCCc--------
Q psy1285           6 QVASLVTCFVWDRRTLNET---TAK---PVGVLAGHRDGITFIDPKGD-SRHLISNSKDQTIKLWDVRKFNG--------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~---~~~---~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~--------   70 (118)
                      +++.|+.|+|||+......   ...   ....+.+|.+.|.+++|+|+ +.+|++++.|++|++||+++...        
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~  192 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST  192 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence            4567999999998752100   011   24556679999999999997 78999999999999999986421        


Q ss_pred             ---------------cceecCCcEEEEeCCCCcceeeeccc-------CcceeeEeeeee
Q psy1285          71 ---------------AANSKDQTIKLWDVRKFSNKTAQRNT-------FRAVCEQNWEYR  108 (118)
Q Consensus        71 ---------------~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~  108 (118)
                                     ++|+.|++|++||++ +.....+..+       ...+..+.|+..
T Consensus       193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~  251 (434)
T 2oit_A          193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT  251 (434)
T ss_dssp             GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET
T ss_pred             CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecC
Confidence                           788999999999999 4433333222       236778888753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.54  E-value=1.4e-13  Score=90.76  Aligned_cols=101  Identities=14%  Similarity=-0.047  Sum_probs=81.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCcee-eecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC------------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVG-VLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR------------------   66 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~------------------   66 (118)
                      +++.|+.|++||++....  ..... ...+|...|.+++|+|+++++++++.|+.|++||++                  
T Consensus       113 ~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  190 (372)
T 1k8k_C          113 VGSGSRVISICYFEQEND--WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP  190 (372)
T ss_dssp             EEETTSSEEEEEEETTTT--EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred             EEeCCCEEEEEEecCCCc--ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccc
Confidence            567899999999986210  11122 335789999999999999999999999999999964                  


Q ss_pred             CCCc-----------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          67 KFNG-----------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        67 ~~~~-----------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                      ....                       ++++.|+.|++||+++++....+..+...+..+.|++.
T Consensus       191 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  255 (372)
T 1k8k_C          191 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE  255 (372)
T ss_dssp             TTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEET
T ss_pred             hhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecC
Confidence            1111                       77889999999999999988888888888999999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.54  E-value=7.5e-14  Score=100.86  Aligned_cols=100  Identities=12%  Similarity=0.209  Sum_probs=82.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC--CCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD--SRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      +++.||.|++||+...   .......+.+|...|.+++|+|+  +..+++++.|+.|++||++....             
T Consensus        72 s~s~Dg~I~vwd~~~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v  148 (753)
T 3jro_A           72 SCSYDGKVLIWKEENG---RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  148 (753)
T ss_dssp             EEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCE
T ss_pred             EEeCCCeEEEEECCCC---cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCce
Confidence            6788999999999862   11266777889999999999998  99999999999999999976511             


Q ss_pred             -------------------------cceecCCcEEEEeCCCCcc----eeeecccCcceeeEeeeee
Q psy1285          71 -------------------------AANSKDQTIKLWDVRKFSN----KTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------------------------~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~  108 (118)
                                               ++|+.|+.|++||++....    ...+..|...|..+.|++.
T Consensus       149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  215 (753)
T 3jro_A          149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  215 (753)
T ss_dssp             EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence                                     5678899999999998743    3455678889999999876

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.54  E-value=8.5e-14  Score=93.14  Aligned_cols=99  Identities=16%  Similarity=0.302  Sum_probs=83.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCc------cCcEEEEEeCCCC-CeEEEeeCCC---cEEEEecCCCC------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGH------RDGITFIDPKGDS-RHLISNSKDQ---TIKLWDVRKFN------   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~l~s~~~d~---~i~~wd~~~~~------   69 (118)
                      +++.|+.|++||++.     ......+..|      ...+.+++|+|++ .++++++.|+   .|++||+++..      
T Consensus       183 ~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~  257 (416)
T 2pm9_A          183 SAGSSNFASIWDLKA-----KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL  257 (416)
T ss_dssp             EESSSSCEEEEETTT-----TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC
T ss_pred             EEcCCCCEEEEECCC-----CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe
Confidence            567899999999987     5666666655      7889999999986 6899999998   99999998631      


Q ss_pred             --c------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeec
Q psy1285          70 --G------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        70 --~------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  109 (118)
                        .                  ++++.|+.|++||+++++....+..|...+..+.|++.-
T Consensus       258 ~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~  317 (416)
T 2pm9_A          258 NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEA  317 (416)
T ss_dssp             CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTC
T ss_pred             ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCC
Confidence              1                  678889999999999999888888888889999988754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.53  E-value=4.1e-14  Score=94.48  Aligned_cols=98  Identities=18%  Similarity=0.351  Sum_probs=83.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|+.|++||++.     ......+.+|...+.+++|+|++ .+++++.|+.|++||+++...               
T Consensus       264 ~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~  337 (425)
T 1r5m_A          264 SASDDGTLRIWHGGN-----GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGR  337 (425)
T ss_dssp             EEETTSCEEEECSSS-----BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred             EEcCCCEEEEEECCC-----CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEE
Confidence            567899999999987     67777888899999999999999 999999999999999986443               


Q ss_pred             --------cceecCCcEEEEeCCCCc--------------------ceeeecccCc--ceeeEeeeeec
Q psy1285          71 --------AANSKDQTIKLWDVRKFS--------------------NKTAQRNTFR--AVCEQNWEYRR  109 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~--------------------~~~~~~~~~~--~v~~~~~~~~~  109 (118)
                              ++++.|+.|++||+++..                    ....+..|..  .+..+.|++.-
T Consensus       338 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  406 (425)
T 1r5m_A          338 ISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG  406 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS
T ss_pred             EcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC
Confidence                    778889999999999887                    6667777755  89999997653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.53  E-value=1.5e-13  Score=90.23  Aligned_cols=57  Identities=23%  Similarity=0.388  Sum_probs=48.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEe--CCCCCeEEEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDP--KGDSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      +++.||.|++||+..     ..... +.+|...|.+++|  +++++++++++.|+.|++||+++.
T Consensus       103 s~~~dg~v~iwd~~~-----~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A          103 TASCDKTAKMWDLSS-----NQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             EEETTSEEEEEETTT-----TEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred             EEcCCCcEEEEEcCC-----CCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence            678899999999986     44443 5569999999999  899999999999999999998754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.53  E-value=5e-14  Score=103.67  Aligned_cols=96  Identities=9%  Similarity=0.110  Sum_probs=77.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|+||+...     .+....+ .|...|.+++|+| +++|++++.|++|++||+.+...               
T Consensus        34 sgs~Dg~I~lw~~~~-----~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~  106 (902)
T 2oaj_A           34 IATVTGEVHIYGQQQ-----VEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDT  106 (902)
T ss_dssp             EEETTSEEEEECSTT-----CEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEEC
T ss_pred             EEeCCCEEEEEeCCC-----cEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEE
Confidence            678899999999875     4444433 4788999999999 88999999999999999986432               


Q ss_pred             -------cceecCCcEEEEeCCCCcce-----------eeecccCcceeeEeeeee
Q psy1285          71 -------AANSKDQTIKLWDVRKFSNK-----------TAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~  108 (118)
                             ++|+.|++|++||++.....           .....|...|..+.|++.
T Consensus       107 sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A          107 DASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             CTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence                   78899999999999987753           122467788888888864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.2e-13  Score=89.06  Aligned_cols=95  Identities=21%  Similarity=0.285  Sum_probs=81.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecC-ccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAG-HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.|+.|++||.       ......+.. |...+.+++|+|++. +++++.|+.|++||+++...              
T Consensus       160 ~~~~d~~i~i~d~-------~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  231 (313)
T 3odt_A          160 TASADKTIKLWQN-------DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCI  231 (313)
T ss_dssp             EEETTSCEEEEET-------TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEECCCCEEEEec-------CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEE
Confidence            6788999999994       345556665 899999999999887 89999999999999986543              


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                              ++++.|+.|++||+++++....+..+...+..+.|++.
T Consensus       232 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  277 (313)
T 3odt_A          232 KLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSN  277 (313)
T ss_dssp             EECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTT
T ss_pred             EEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccC
Confidence                    78889999999999999988888888888998888754

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.51  E-value=1.8e-13  Score=91.08  Aligned_cols=95  Identities=18%  Similarity=0.154  Sum_probs=75.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeec---CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLA---GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      +++.|+.|++||++.      .....+.   +|...|.+++|+|+++.|++++.|+.|++||++....            
T Consensus       136 s~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~  209 (383)
T 3ei3_B          136 VSSIRGATTLRDFSG------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTH  209 (383)
T ss_dssp             EEETTTEEEEEETTS------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEE
T ss_pred             EEeCCCEEEEEECCC------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEE
Confidence            578899999999984      3333343   3458899999999999999999999999999853211            


Q ss_pred             -----------cceecCCcEEEEeCCCC----cceeeecccCcceeeEeeee
Q psy1285          71 -----------AANSKDQTIKLWDVRKF----SNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~  107 (118)
                                 ++++.|+.|++||+++.    .....+ .|...+..+.|++
T Consensus       210 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~  260 (383)
T 3ei3_B          210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNP  260 (383)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECT
T ss_pred             EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcC
Confidence                       77889999999999983    333334 6888899988876

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.51  E-value=2.1e-13  Score=95.09  Aligned_cols=100  Identities=16%  Similarity=0.109  Sum_probs=82.6

Q ss_pred             cccc-CceEEEEeCCCCCCCCCCce-eeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC--------------
Q psy1285           6 QVAS-LVTCFVWDRRTLNETTAKPV-GVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN--------------   69 (118)
Q Consensus         6 ~~~~-dg~v~iwd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--------------   69 (118)
                      +++. |+.|++||+..     .... ..+.+|...|.+++|+|++++|++++.|+.|++||+.+..              
T Consensus       461 ~~~~~d~~i~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~  535 (615)
T 1pgu_A          461 VGLEEGNTIQVFKLSD-----LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN  535 (615)
T ss_dssp             EEETTTSCEEEEETTE-----EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred             EeecCCCeEEEEECCC-----ccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCcee
Confidence            3455 89999999986     3332 5667899999999999999999999999999999986421              


Q ss_pred             -----------------c---cceecCCcEEEEeCCCC-cceeeecccCcceeeEeeeeecc
Q psy1285          70 -----------------G---AANSKDQTIKLWDVRKF-SNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        70 -----------------~---~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                                       .   ++++.|+.|++||+.++ .....+..|...|..+.|++.-.
T Consensus       536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  597 (615)
T 1pgu_A          536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST  597 (615)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE
T ss_pred             EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC
Confidence                             1   56788999999999998 66667778999999999987644

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.51  E-value=1.2e-13  Score=93.30  Aligned_cols=103  Identities=15%  Similarity=0.242  Sum_probs=77.4

Q ss_pred             ccccCceEEEEeCCCCCC------CCCCceeeecCcc------------CcEEEEEeCCCC--CeEEEeeCCCcEEEEec
Q psy1285           6 QVASLVTCFVWDRRTLNE------TTAKPVGVLAGHR------------DGITFIDPKGDS--RHLISNSKDQTIKLWDV   65 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~------~~~~~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~~~d~~i~~wd~   65 (118)
                      +++.||.|+|||+.....      ........+.+|.            +.|.+++|+|++  ..|++++.|++|++||+
T Consensus        45 ~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~  124 (447)
T 3dw8_B           45 TGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKI  124 (447)
T ss_dssp             EEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEE
T ss_pred             EEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEec
Confidence            678899999999986321      0112466788898            889999999988  78999999999999997


Q ss_pred             CC----------------------------------------------CCc-----------------cceecCCcEEEE
Q psy1285          66 RK----------------------------------------------FNG-----------------AANSKDQTIKLW   82 (118)
Q Consensus        66 ~~----------------------------------------------~~~-----------------~s~~~d~~i~iw   82 (118)
                      ..                                              ...                 ++| .|+.|++|
T Consensus       125 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iw  203 (447)
T 3dw8_B          125 SERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLW  203 (447)
T ss_dssp             EEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEE
T ss_pred             ccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEE
Confidence            53                                              111                 566 79999999


Q ss_pred             eCCCCccee--------eecccCcceeeEeeeeec
Q psy1285          83 DVRKFSNKT--------AQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        83 d~~~~~~~~--------~~~~~~~~v~~~~~~~~~  109 (118)
                      |++......        .+..|...|..+.|++.-
T Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  238 (447)
T 3dw8_B          204 HLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS  238 (447)
T ss_dssp             ETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC
T ss_pred             ECCCCCceeeeeecccccccccCcceEEEEECCCC
Confidence            999544332        245788889999998653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.50  E-value=1.3e-13  Score=93.09  Aligned_cols=75  Identities=20%  Similarity=0.270  Sum_probs=60.8

Q ss_pred             cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC--------------c------------------cceecCCcEE
Q psy1285          33 AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN--------------G------------------AANSKDQTIK   80 (118)
Q Consensus        33 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--------------~------------------~s~~~d~~i~   80 (118)
                      .+|...|.+++|+|++++|+++ .|+.|++||++...              .                  ++|+.|+.|+
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  252 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR  252 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence            5799999999999999999998 79999999998210              1                  7788999999


Q ss_pred             EEeCCCCcc----eeeecccCc------------ceeeEeeeee
Q psy1285          81 LWDVRKFSN----KTAQRNTFR------------AVCEQNWEYR  108 (118)
Q Consensus        81 iwd~~~~~~----~~~~~~~~~------------~v~~~~~~~~  108 (118)
                      +||+++...    ...+..+..            .+..+.|++.
T Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  296 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS  296 (447)
T ss_dssp             EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT
T ss_pred             EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCC
Confidence            999999886    556666654            7888888763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.50  E-value=5.5e-14  Score=93.93  Aligned_cols=58  Identities=16%  Similarity=0.047  Sum_probs=52.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeee-cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVL-AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      +++.|++|+|||+..     .+++..+ .+|.+.|.+++|+||+++|++++.|++|+|||+...
T Consensus       286 sgs~D~~V~iwd~~~-----~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          286 LASNDNSIALVKLKD-----LSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEETTSCEEEEETTT-----TEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEcCCCEEEEEECCC-----CcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            678899999999987     6777764 789999999999999999999999999999999654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.50  E-value=4.9e-13  Score=86.78  Aligned_cols=104  Identities=12%  Similarity=0.090  Sum_probs=82.4

Q ss_pred             ccccCceEEEEeCCCCCCC----CCCceeeecCccCcEEEEEeCCC--CCeEEEeeCCCcEEEEecCCCC----------
Q psy1285           6 QVASLVTCFVWDRRTLNET----TAKPVGVLAGHRDGITFIDPKGD--SRHLISNSKDQTIKLWDVRKFN----------   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~----------   69 (118)
                      +++.||.|++||++.....    ...+...+.+|.+.|.+++|+|+  +.++++++.|+.|++||+++..          
T Consensus        76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  155 (351)
T 3f3f_A           76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE  155 (351)
T ss_dssp             EEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE
T ss_pred             EEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc
Confidence            6788999999999863210    01446778889999999999998  9999999999999999987543          


Q ss_pred             --------------------------c---cceecCCcEEEEeCCCCcc--eeeecccCcceeeEeeeeec
Q psy1285          70 --------------------------G---AANSKDQTIKLWDVRKFSN--KTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        70 --------------------------~---~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~  109 (118)
                                                .   ++++.++.+.+|+......  ...+..|...|..+.|++.-
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~  226 (351)
T 3f3f_A          156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSI  226 (351)
T ss_dssp             EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred             ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCC
Confidence                                      1   6677888998888877765  44556888899999998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.50  E-value=3.1e-13  Score=97.31  Aligned_cols=97  Identities=22%  Similarity=0.240  Sum_probs=82.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||.|++||+..     ......+.+|.+.|.+++|+|+++.|++++.|+.|++||+.+...               
T Consensus        72 ~~~~dg~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~  146 (814)
T 3mkq_A           72 VGSDDFRIRVFNYNT-----GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV  146 (814)
T ss_dssp             EEETTSEEEEEETTT-----CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred             EEeCCCeEEEEECCC-----CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence            567799999999987     677888899999999999999999999999999999999876421               


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeecc-cCcceeeEeeee
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQRN-TFRAVCEQNWEY  107 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~  107 (118)
                                ++++.|+.|++||++.......+.. +...+..+.|++
T Consensus       147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  194 (814)
T 3mkq_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP  194 (814)
T ss_dssp             EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEE
Confidence                      6788899999999998887776663 336788888865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.50  E-value=6.3e-13  Score=87.12  Aligned_cols=98  Identities=11%  Similarity=0.124  Sum_probs=74.5

Q ss_pred             CceEEEEeCCCCCCCCCCceee-ecCccCcEEEEEeCCC---CCeEEEeeCCCcEEEEecCCCC-c--------------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGV-LAGHRDGITFIDPKGD---SRHLISNSKDQTIKLWDVRKFN-G--------------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~~wd~~~~~-~--------------   70 (118)
                      |+.|++||+..     ...... ..+|.+.|.+++|+|+   +.+|++++.|+.|++||+.+.. .              
T Consensus        43 d~~v~iw~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  117 (357)
T 3i2n_A           43 TGVIQLYEIQH-----GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAI  117 (357)
T ss_dssp             CEEEEEEEECS-----SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEE
T ss_pred             CcEEEEEeCCC-----CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEE
Confidence            89999999986     343322 2368999999999998   6999999999999999998654 2              


Q ss_pred             ---------------cceecCCcEEEEeCCCCc-ceeeecccCc----ceeeEeeeeecccC
Q psy1285          71 ---------------AANSKDQTIKLWDVRKFS-NKTAQRNTFR----AVCEQNWEYRRENV  112 (118)
Q Consensus        71 ---------------~s~~~d~~i~iwd~~~~~-~~~~~~~~~~----~v~~~~~~~~~~~~  112 (118)
                                     ++++.|+.|++||++... ....+..+..    .+..+.|++.+.+.
T Consensus       118 ~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  179 (357)
T 3i2n_A          118 DGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQE  179 (357)
T ss_dssp             EEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-C
T ss_pred             eeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCC
Confidence                           567889999999999887 4555544333    67777765544443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.50  E-value=7.4e-13  Score=89.57  Aligned_cols=59  Identities=22%  Similarity=0.267  Sum_probs=42.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      +++.|+.+++||....    ...+..+.+|...+..+.++|+++++++++.|+.+++|+....
T Consensus       204 sgs~d~~i~~~d~~~~----~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          204 SGSRSGHIHHHDVRVA----EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             EEETTSEEEEEETTSS----SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EEeCCCceeEeeeccc----ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            4556666666666542    3445566778888888888888888888888888888887643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.49  E-value=4.2e-13  Score=98.82  Aligned_cols=96  Identities=11%  Similarity=0.101  Sum_probs=78.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC----------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN----------------   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----------------   69 (118)
                      +++.|++|++||+..     .+.+..+. |.+.|.+++|+|+++++++|+.||+|++||+++..                
T Consensus        74 S~s~D~~v~lWd~~~-----~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~  147 (902)
T 2oaj_A           74 VINAKDTVYVLSLYS-----QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFP  147 (902)
T ss_dssp             EEETTCEEEEEETTT-----CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCS
T ss_pred             EEECcCeEEEEECCC-----CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccc
Confidence            678899999999987     56666775 77899999999999999999999999999986431                


Q ss_pred             -c------------------cceecCCcEEEEeCCCCcceeeeccc------------------CcceeeEeeeee
Q psy1285          70 -G------------------AANSKDQTIKLWDVRKFSNKTAQRNT------------------FRAVCEQNWEYR  108 (118)
Q Consensus        70 -~------------------~s~~~d~~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~  108 (118)
                       .                  ++|+.|+.| +||+++.+....+..+                  ...|..+.|++.
T Consensus       148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd  222 (902)
T 2oaj_A          148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN  222 (902)
T ss_dssp             SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred             ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence             0                  677889999 9999998877666544                  356777777654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.46  E-value=1.6e-12  Score=88.69  Aligned_cols=96  Identities=13%  Similarity=0.023  Sum_probs=79.5

Q ss_pred             ccccCceEEEEeCC--CCCCCCCCceeeec--CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC-------c----
Q psy1285           6 QVASLVTCFVWDRR--TLNETTAKPVGVLA--GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN-------G----   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~--~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-------~----   70 (118)
                      +++.||.|+|||+.  .     ......+.  .|...|.+++|+|++++|++++.|+.+.+|++.+..       .    
T Consensus       120 ~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h  194 (450)
T 2vdu_B          120 CADSDKSLLVFDVDKTS-----KNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH  194 (450)
T ss_dssp             EEGGGTEEEEEEECSSS-----SSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC
T ss_pred             EECCCCeEEEEECcCCC-----CceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc
Confidence            56679999999998  4     56666665  567889999999999999999999999999875421       0    


Q ss_pred             -------------------cceecCCcEEEEeCCCCcceee-ecccCcceeeEeee
Q psy1285          71 -------------------AANSKDQTIKLWDVRKFSNKTA-QRNTFRAVCEQNWE  106 (118)
Q Consensus        71 -------------------~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~  106 (118)
                                         ++++.|++|++||+++...... +.+|...|..+.|+
T Consensus       195 ~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s  250 (450)
T 2vdu_B          195 VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG  250 (450)
T ss_dssp             SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC
T ss_pred             cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC
Confidence                               5678899999999999888776 44888889999987

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.45  E-value=8e-13  Score=92.95  Aligned_cols=97  Identities=13%  Similarity=0.074  Sum_probs=72.9

Q ss_pred             ccccCceEEEEeCCCCCCCCC--Cceeee----cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC----------
Q psy1285           6 QVASLVTCFVWDRRTLNETTA--KPVGVL----AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN----------   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~--~~~~~~----~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----------   69 (118)
                      +++.||+|+|||+........  -.+.++    .+|.+.|.+++|+|+|  +++++.|++|++||+....          
T Consensus       146 sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~  223 (588)
T 2j04_A          146 VGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN  223 (588)
T ss_dssp             EEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred             EEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence            788899999999986311000  024565    6788899999999999  7888999999999985432          


Q ss_pred             c---------------cceecCCcEEEEeCCCCcceeeecccCcceeeEee
Q psy1285          70 G---------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNW  105 (118)
Q Consensus        70 ~---------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  105 (118)
                      .               ++++ +++|++||+..........+|...+..+.+
T Consensus       224 ~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~  273 (588)
T 2j04_A          224 ASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPL  273 (588)
T ss_dssp             CCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEE
T ss_pred             cccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEe
Confidence            1               4444 799999999987774433378888888877

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.45  E-value=2.7e-13  Score=90.21  Aligned_cols=58  Identities=16%  Similarity=0.126  Sum_probs=52.6

Q ss_pred             ccccCce-EEEEeCCCCCCCCCCceeeec-C-ccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVT-CFVWDRRTLNETTAKPVGVLA-G-HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~-v~iwd~~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      +++.|++ |++||++.     .+.+..+. + |.+.|.+++|+|++++|++++.|++|++||++..
T Consensus       212 s~s~d~~~v~iwd~~~-----~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          212 TCSQDGTIIRVFKTED-----GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEETTCSEEEEEETTT-----CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEeCCCCEEEEEECCC-----CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            7889998 99999987     67788887 5 9999999999999999999999999999999653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.7e-12  Score=88.47  Aligned_cols=95  Identities=16%  Similarity=0.053  Sum_probs=75.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceee-ecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGV-LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.|++|++||++.     ...+.. +.+|.+.|.+++|+ ++++|++++.|++|++||+++...              
T Consensus       215 s~~~d~~i~vwd~~~-----~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  288 (450)
T 2vdu_B          215 TSDRDEHIKISHYPQ-----CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYL  288 (450)
T ss_dssp             EEETTSCEEEEEESC-----TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGC
T ss_pred             EEcCCCcEEEEECCC-----CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhh
Confidence            577899999999986     556655 55899999999999 999999999999999999876431              


Q ss_pred             ----------------------------------ccee-cCCcEEEEeC--CCC---cceeeecccCcceeeEeeee
Q psy1285          71 ----------------------------------AANS-KDQTIKLWDV--RKF---SNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ----------------------------------~s~~-~d~~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~~~  107 (118)
                                                        ++++ .|+.|++|++  ...   .....+..+ ..+..+.|++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~  364 (450)
T 2vdu_B          289 NDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN  364 (450)
T ss_dssp             CTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred             hhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence                                              4455 7899999999  444   444455555 6788888876

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.45  E-value=3.1e-13  Score=87.41  Aligned_cols=57  Identities=21%  Similarity=0.394  Sum_probs=52.6

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      +.|+.|+|||++.     .+++..+.+|.+.|.+++|+|++++|++++.|++|++||+....
T Consensus       261 ~~d~~i~iwd~~~-----~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          261 FAQNQLVIWKYPT-----MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             TTTCCEEEEETTT-----CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             cCCCEEEEEECCC-----CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            4689999999987     78889999999999999999999999999999999999997654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.44  E-value=4.4e-13  Score=100.44  Aligned_cols=98  Identities=18%  Similarity=0.174  Sum_probs=86.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++.||.|++||+..     ......+.+|.+.|.+++|+|+++++++++.|+.|++||+.+...               
T Consensus       978 ~g~~~g~i~i~d~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~ 1052 (1249)
T 3sfz_A          978 FGDEDGAIKIIELPN-----NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRL 1052 (1249)
T ss_dssp             EEETTSCCEEEETTT-----TSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEE
T ss_pred             EEcCCCCEEEEEcCC-----CceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEE
Confidence            456789999999987     677778889999999999999999999999999999999986432               


Q ss_pred             ------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                            ++++.|++|++||+.+++....+..|...+..+.|++.
T Consensus      1053 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 1096 (1249)
T 3sfz_A         1053 LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1096 (1249)
T ss_dssp             CSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSS
T ss_pred             cCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCC
Confidence                  67889999999999999998888888888998888764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.3e-12  Score=91.98  Aligned_cols=93  Identities=10%  Similarity=0.118  Sum_probs=74.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccC-----cEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC-----------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRD-----GITFIDPKGDSRHLISNSKDQTIKLWDVRKFN-----------   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----------   69 (118)
                      +++.||.|++||...       .+..+. |..     .+.+++|||+|++|++|+.||+|++||+....           
T Consensus       102 s~s~dg~V~iwd~~~-------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~t  173 (588)
T 2j04_A          102 VLSNNGNVSVFKDNK-------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESS  173 (588)
T ss_dssp             EEETTSCEEEEETTE-------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEE
T ss_pred             EEeCCCcEEEEeCCc-------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeee
Confidence            678899999999542       444455 554     59999999999999999999999999987542           


Q ss_pred             -----c----------------cceecCCcEEEEeCCCCcce---eee-cccCcceeeEeee
Q psy1285          70 -----G----------------AANSKDQTIKLWDVRKFSNK---TAQ-RNTFRAVCEQNWE  106 (118)
Q Consensus        70 -----~----------------~s~~~d~~i~iwd~~~~~~~---~~~-~~~~~~v~~~~~~  106 (118)
                           .                ++++.|++|++||+......   ..+ ..|...|..+.|+
T Consensus       174 i~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs  235 (588)
T 2j04_A          174 IRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV  235 (588)
T ss_dssp             EECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred             eecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence                 0                57888999999999887742   345 3677789999997

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.43  E-value=1.5e-12  Score=90.89  Aligned_cols=94  Identities=17%  Similarity=0.207  Sum_probs=81.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeee-c---CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVL-A---GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~-~---~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------   70 (118)
                      +++.|+.|++||++.     .+.+..+ .   +|.+.|.+++|+ ++.++++++.|+.|++||+++...           
T Consensus       224 ~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  297 (615)
T 1pgu_A          224 TVGSDRKISCFDGKS-----GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL  297 (615)
T ss_dssp             EEETTCCEEEEETTT-----CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred             EEeCCCeEEEEECCC-----CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcc
Confidence            467899999999987     6777777 5   799999999999 999999999999999999985432           


Q ss_pred             ---------------cceecCCcEEEEeCCCCcceeeecccCcceeeEee
Q psy1285          71 ---------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNW  105 (118)
Q Consensus        71 ---------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  105 (118)
                                     ++++.|+.|++||+++.+....+..|...+..+.|
T Consensus       298 ~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~  347 (615)
T 1pgu_A          298 GNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV  347 (615)
T ss_dssp             GGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred             cCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence                           67788999999999998888888888888888877

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.41  E-value=2.4e-12  Score=85.71  Aligned_cols=103  Identities=10%  Similarity=0.068  Sum_probs=79.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCc-----cCcEEEEEeC----CCCCe-EEEeeCCCcEEEEecCC------C-
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGH-----RDGITFIDPK----GDSRH-LISNSKDQTIKLWDVRK------F-   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~~~~-l~s~~~d~~i~~wd~~~------~-   68 (118)
                      +++.||.|++||+.............+..|     ...|.+++|+    |++.. |++++.|+.|++||++.      . 
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence            567899999999987211111117778888     5899999999    99999 99999999999999876      1 


Q ss_pred             --C-----------------c--------------cceecCCcEEEEeCCCCcceeeecc---c---CcceeeEeeeee
Q psy1285          69 --N-----------------G--------------AANSKDQTIKLWDVRKFSNKTAQRN---T---FRAVCEQNWEYR  108 (118)
Q Consensus        69 --~-----------------~--------------~s~~~d~~i~iwd~~~~~~~~~~~~---~---~~~v~~~~~~~~  108 (118)
                        .                 .              ++++.|+.|++||+++.+....+..   |   ...+..+.|++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~  244 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  244 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence              1                 1              5677899999999999988888877   7   888999999764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.39  E-value=1.2e-11  Score=80.73  Aligned_cols=96  Identities=8%  Similarity=-0.040  Sum_probs=77.9

Q ss_pred             ccccCceEEEEeCCC-CCCCCCCceeeecCccCcEEEEEeCC-CCCeEEEeeCCCcEEEEecCCC------C--------
Q psy1285           6 QVASLVTCFVWDRRT-LNETTAKPVGVLAGHRDGITFIDPKG-DSRHLISNSKDQTIKLWDVRKF------N--------   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~------~--------   69 (118)
                      +++.|+.|++||++. ..   .........|...+.+++|+| +++++++++.|+.+++|++...      .        
T Consensus       165 ~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  241 (342)
T 1yfq_A          165 VGMNNSQVQWFRLPLCED---DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEESTTEEEEEESSCCTT---CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             EEeCCCeEEEEECCcccc---ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence            567899999999985 31   122334456888999999999 9999999999999999998654      1        


Q ss_pred             -----------c-------------cceecCCcEEEEeCCCCcceeeeccc-CcceeeEe
Q psy1285          70 -----------G-------------AANSKDQTIKLWDVRKFSNKTAQRNT-FRAVCEQN  104 (118)
Q Consensus        70 -----------~-------------~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~  104 (118)
                                 .             ++++.|+.|++||+++++....+..| ...|..+.
T Consensus       242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~  301 (342)
T 1yfq_A          242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA  301 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred             cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec
Confidence                       1             77889999999999999988888877 87777766

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.38  E-value=3.8e-12  Score=83.11  Aligned_cols=95  Identities=14%  Similarity=0.062  Sum_probs=76.3

Q ss_pred             ccccCceEEEEeC-CCCCCCCCCceeeecC--ccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC---------CCc---
Q psy1285           6 QVASLVTCFVWDR-RTLNETTAKPVGVLAG--HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK---------FNG---   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~-~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~---------~~~---   70 (118)
                      +++.||.|++||+ ..     . ....+.+  |...|.+++|+| +..+++++.|+.|++||+++         ...   
T Consensus        74 ~~~~dg~i~~wd~~~~-----~-~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  146 (342)
T 1yfq_A           74 VGTVQGEILKVDLIGS-----P-SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             EEETTSCEEEECSSSS-----S-SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred             EEcCCCeEEEEEeccC-----C-ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence            5677999999999 75     2 3366778  999999999999 99999999999999999876         332   


Q ss_pred             -----------------cceecCCcEEEEeCCC-Ccce--eeecccCcceeeEeeee
Q psy1285          71 -----------------AANSKDQTIKLWDVRK-FSNK--TAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 -----------------~s~~~d~~i~iwd~~~-~~~~--~~~~~~~~~v~~~~~~~  107 (118)
                                       ++++.|+.|++||++. ....  .....+...+..+.|++
T Consensus       147 ~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~  203 (342)
T 1yfq_A          147 TKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP  203 (342)
T ss_dssp             SSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECS
T ss_pred             EeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECC
Confidence                             6788899999999998 5542  23335667788888876

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.36  E-value=1.2e-12  Score=87.28  Aligned_cols=56  Identities=21%  Similarity=0.318  Sum_probs=47.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEE-EEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGIT-FIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      +++.|++|||||+..     ++.+.++.+|...+. +++|+|++++|++|+.|++|+|||+.
T Consensus       300 SgS~DgTIkIWDl~t-----Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          300 AILTSGTIAIWDLLL-----GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             EEETTSCEEEEETTT-----CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             EEcCCCcEEEEECCC-----CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            455799999999987     788899998987665 68999999999999999999999963

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.29  E-value=4.5e-11  Score=79.57  Aligned_cols=96  Identities=10%  Similarity=0.028  Sum_probs=74.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeE-EEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHL-ISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +.+.|+.|++||+..     .+....+..|. .+.+++|+|+++.+ ++++.|+.|++||+.+...              
T Consensus         7 s~~~d~~v~v~d~~~-----~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~   80 (391)
T 1l0q_A            7 ANSESDNISVIDVTS-----NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA   80 (391)
T ss_dssp             EETTTTEEEEEETTT-----TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred             EcCCCCEEEEEECCC-----CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceE
Confidence            567899999999987     67777777554 58999999999876 6777999999999976433              


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                               ++++.++.|++||+.+++....+..+ ..+..+.|++.
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d  126 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD  126 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC
Confidence                     34556799999999998877666533 34677777644

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.22  E-value=4.1e-11  Score=80.74  Aligned_cols=96  Identities=9%  Similarity=0.015  Sum_probs=73.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCcee-----eecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc----------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVG-----VLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----------   70 (118)
                      +.+.|+.|++||+..     .+...     .+.+|.+.+.+++|+++++.+++++.|+.|++||+.+...          
T Consensus       139 ~~~~~~~i~~~d~~~-----g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~  213 (433)
T 3bws_A          139 PLLEDEGMDVLDINS-----GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW  213 (433)
T ss_dssp             EBTTSSSEEEEETTT-----CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS
T ss_pred             EeCCCCeEEEEECCC-----CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC
Confidence            445678999999986     44444     4557888999999999999999999999999999986432          


Q ss_pred             --------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 --------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                                    ++++.|+.|++||+++++....+..+ ..+..+.|++
T Consensus       214 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~  263 (433)
T 3bws_A          214 SKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSK  263 (433)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECT
T ss_pred             eeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcC
Confidence                          34446899999999988876665533 3356666653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.18  E-value=3.2e-10  Score=75.43  Aligned_cols=96  Identities=10%  Similarity=0.018  Sum_probs=72.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEE-EeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLI-SNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +.+.|+.|++||+..     .+....+..+. .+.+++|+|+++.++ +++.++.|.+||+.+...              
T Consensus        49 ~~~~d~~i~v~d~~~-----~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~  122 (391)
T 1l0q_A           49 ANAHSNDVSIIDTAT-----NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLA  122 (391)
T ss_dssp             EEGGGTEEEEEETTT-----TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred             ECCCCCeEEEEECCC-----CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEE
Confidence            345789999999986     66666666444 899999999999875 555679999999986433              


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                               ++++.++.|++||+++++....+..+. .+..+.|++.
T Consensus       123 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~d  168 (391)
T 1l0q_A          123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPD  168 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCC
Confidence                     466678999999999988776665443 3566666543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.16  E-value=2.2e-10  Score=78.36  Aligned_cols=56  Identities=9%  Similarity=-0.056  Sum_probs=49.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      +++.||+|++||++.     ........+|...|.+++|+|++++|++|+.|++|++||.+
T Consensus       167 s~s~Dg~v~iwD~~~-----~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          167 VCLADGSIAVLQVTE-----TVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EEETTSCEEEEEESS-----SEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             EEECCCeEEEEEcCC-----CcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            578899999999987     44444556789999999999999999999999999999987

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.15  E-value=5.8e-10  Score=75.70  Aligned_cols=91  Identities=13%  Similarity=-0.041  Sum_probs=69.9

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCC---cEEEEecCCCCc-----------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQ---TIKLWDVRKFNG-----------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~-----------------   70 (118)
                      +.|++||+..      .....+.+|.+.+.+++|+|+|+.|++++.++   .|.+||+.+...                 
T Consensus       159 ~~i~i~d~~g------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~sp  232 (415)
T 2hqs_A          159 YELRVSDYDG------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP  232 (415)
T ss_dssp             EEEEEEETTS------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT
T ss_pred             ceEEEEcCCC------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcC
Confidence            7999999974      33456777999999999999999999998875   999999986543                 


Q ss_pred             -----c-ceecCC--cEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -----A-ANSKDQ--TIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -----~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                           + +++.++  .|.+||+++... ..+..+...+..+.|++.
T Consensus       233 dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd  277 (415)
T 2hqs_A          233 DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPD  277 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTT
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCC
Confidence                 2 444444  499999988765 455566667777777653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.15  E-value=4.7e-10  Score=75.56  Aligned_cols=97  Identities=8%  Similarity=-0.098  Sum_probs=73.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEE-EeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLI-SNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.|+.|++||++.     .+....+..|...+.+++|+|+++.++ +++.|+.|.+||+++...              
T Consensus       186 s~~~d~~v~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  260 (433)
T 3bws_A          186 SQMQANAVHVFDLKT-----LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLL  260 (433)
T ss_dssp             EEGGGTEEEEEETTT-----CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEE
T ss_pred             EECCCCEEEEEECCC-----ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEE
Confidence            566789999999986     677777888899999999999998875 555899999999976432              


Q ss_pred             --------ccee--------cCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------AANS--------KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                              ++++        .|+.|++||+++++....+ .+...+..+.|++.
T Consensus       261 ~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~  313 (433)
T 3bws_A          261 LSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNT  313 (433)
T ss_dssp             ECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSS
T ss_pred             EcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCC
Confidence                    3344        3789999999988765544 23345666666543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.81  E-value=7.6e-08  Score=60.98  Aligned_cols=55  Identities=15%  Similarity=0.033  Sum_probs=45.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      ..+.|++|++||+..     .+.. .+..|.+.+.+++|+|++++|++++ ++.|.+||+.+
T Consensus        17 ~~~~~~~i~~~d~~~-----~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~   71 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRT-----RKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAG   71 (297)
T ss_dssp             -CCCCEEEEEEETTT-----TEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSS
T ss_pred             CCCcceeEEEEeCCC-----Ccee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCC
Confidence            456789999999986     4433 4455889999999999999999876 78999999987

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.80  E-value=1.3e-07  Score=66.40  Aligned_cols=83  Identities=14%  Similarity=0.130  Sum_probs=65.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEec--CCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV--RKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~--~~~~~-------------   70 (118)
                      +.+.|++|++||..+     .+.+.++..+.. +.+++|+|++++|++++.|++|.+||+  .+...             
T Consensus       154 s~~~d~~V~v~D~~t-----~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~v  227 (543)
T 1nir_A          154 TLRDAGQIALVDGDS-----KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  227 (543)
T ss_dssp             EEGGGTEEEEEETTT-----CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             EEcCCCeEEEEECCC-----ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceE
Confidence            456689999999987     677777773333 889999999999999999999999999  54321             


Q ss_pred             -------------ccee-cCCcEEEEeCCCCcceeeec
Q psy1285          71 -------------AANS-KDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 -------------~s~~-~d~~i~iwd~~~~~~~~~~~   94 (118)
                                   ++++ .+++|.+||..+.+....+.
T Consensus       228 a~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~  265 (543)
T 1nir_A          228 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS  265 (543)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE
T ss_pred             EeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeec
Confidence                         2333 47899999999888776654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.77  E-value=1e-07  Score=68.08  Aligned_cols=79  Identities=9%  Similarity=-0.037  Sum_probs=59.5

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccC---cEEEEEeCCCCCeEEEeeCC---------CcEEEEecCCCCc-----
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRD---GITFIDPKGDSRHLISNSKD---------QTIKLWDVRKFNG-----   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~-----   70 (118)
                      +.||+|++||+.+     ++....+..|..   .+.+++|||||+.|++++.+         +.+.+||+.+...     
T Consensus        34 ~~dg~i~~~d~~~-----g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  108 (723)
T 1xfd_A           34 EQKGTVRLWNVET-----NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP  108 (723)
T ss_dssp             CSSSCEEEBCGGG-----CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC
T ss_pred             eCCCCEEEEECCC-----CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC
Confidence            5789999999987     555566666654   48999999999999988764         6788999875431     


Q ss_pred             --------------------cceecCCcEEEEeCCCCcceee
Q psy1285          71 --------------------AANSKDQTIKLWDVRKFSNKTA   92 (118)
Q Consensus        71 --------------------~s~~~d~~i~iwd~~~~~~~~~   92 (118)
                                          +.++ ++.|.+||+.++.....
T Consensus       109 ~~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~g~~~~~  149 (723)
T 1xfd_A          109 PEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRV  149 (723)
T ss_dssp             TTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEE
T ss_pred             CccccccccccEECCCCCEEEEEE-CCeEEEEECCCCceEEE
Confidence                                2333 47899999988766543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.70  E-value=1.9e-07  Score=63.33  Aligned_cols=93  Identities=13%  Similarity=0.008  Sum_probs=68.7

Q ss_pred             eEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCC---CcEEEEecCCCCc------------------
Q psy1285          12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKD---QTIKLWDVRKFNG------------------   70 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~------------------   70 (118)
                      .|.+||+..     .+ ...+..+...+.+++|+|+|++|+.++.+   ..|.+||+.+...                  
T Consensus       292 ~i~~~d~~~-----~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg  365 (415)
T 2hqs_A          292 QVYKVNING-----GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNG  365 (415)
T ss_dssp             EEEEEETTS-----SC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTS
T ss_pred             EEEEEECCC-----CC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCC
Confidence            677778765     33 23345567788999999999999887764   5899999876432                  


Q ss_pred             ---cceecCC---cEEEEeCCCCcceeeecccCcceeeEeeeeeccc
Q psy1285          71 ---AANSKDQ---TIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        71 ---~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  111 (118)
                         ++++.++   .|.+||+. +.....+..+...|..+.|++....
T Consensus       366 ~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          366 TMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             SEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCCC
T ss_pred             CEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccccc
Confidence               4455555   79999987 4456677788889999999987654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.65  E-value=1e-06  Score=57.23  Aligned_cols=96  Identities=8%  Similarity=-0.064  Sum_probs=67.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeC-CCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSK-DQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~--------------   70 (118)
                      +.+.++.|++||+..     .+....+..+...+ +++|+|+++.+++++. ++.|.+||..+...              
T Consensus        15 ~~~~~~~v~~~d~~~-----~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~   88 (331)
T 3u4y_A           15 VEQHLRRISFFSTDT-----LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD   88 (331)
T ss_dssp             EEGGGTEEEEEETTT-----CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC
T ss_pred             EecCCCeEEEEeCcc-----cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc
Confidence            567789999999987     56666666555666 9999999997665555 88999999976541              


Q ss_pred             ----------cceecC-C--cEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ----------AANSKD-Q--TIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ----------~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                +++..+ +  .|.+||+.+++....+... .....+.|++.
T Consensus        89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spd  138 (331)
T 3u4y_A           89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPN  138 (331)
T ss_dssp             EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTT
T ss_pred             eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCC
Confidence                      322223 2  8999999988876655432 23456666543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.60  E-value=3.1e-07  Score=58.15  Aligned_cols=99  Identities=16%  Similarity=0.073  Sum_probs=68.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEee-CCCcEEEEecCC-CCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNS-KDQTIKLWDVRK-FNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~wd~~~-~~~-------------   70 (118)
                      +++.|+.++||+++..    ......+..+...+.+++|+|+++.++.++ .++.+.+|++.. ...             
T Consensus       146 ~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  221 (297)
T 2ojh_A          146 CGIRDQVFDIYSMDID----SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWF  221 (297)
T ss_dssp             EEEETTEEEEEEEETT----TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEE
T ss_pred             EECCCCceEEEEEECC----CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCC
Confidence            4456788999997541    233455666888899999999999887665 588999998752 111             


Q ss_pred             ----------cceecC-----------CcEEEEeCCCCccee--eecccCcceeeEeeeee
Q psy1285          71 ----------AANSKD-----------QTIKLWDVRKFSNKT--AQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ----------~s~~~d-----------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~  108 (118)
                                +.++.+           ..|.+||+.+.+...  .+..+...+..+.|++.
T Consensus       222 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd  282 (297)
T 2ojh_A          222 PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPD  282 (297)
T ss_dssp             EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTT
T ss_pred             eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCC
Confidence                      334433           569999998876533  33356667777777643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.57  E-value=5.6e-07  Score=63.25  Aligned_cols=96  Identities=7%  Similarity=0.022  Sum_probs=64.6

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEe-eCCCcEEEEecCCCCc---------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISN-SKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~---------------   70 (118)
                      ...+++|.+||+....   ...+..+. +...+.++.|+|++++++++ ..+++|.+||..+...               
T Consensus       298 ~~~~g~i~vvd~~~~~---~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g  373 (543)
T 1nir_A          298 VKETGKVLLVNYKDID---NLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG  373 (543)
T ss_dssp             ETTTTEEEEEECTTSS---SCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTC
T ss_pred             ECCCCeEEEEEecCCC---cceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCC
Confidence            3457899999997621   11122333 56678889999999977654 5689999999876432               


Q ss_pred             ------------ccee-cCCcEEEEeCCC-------CcceeeecccCcceeeEeee
Q psy1285          71 ------------AANS-KDQTIKLWDVRK-------FSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 ------------~s~~-~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~  106 (118)
                                  +++. .|++|.+||+.+       .+....+..+...+..+.++
T Consensus       374 ~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~  429 (543)
T 1nir_A          374 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH  429 (543)
T ss_dssp             EEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred             cccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC
Confidence                        3333 478999999988       66666666665444444443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.56  E-value=1.2e-06  Score=65.59  Aligned_cols=91  Identities=12%  Similarity=0.080  Sum_probs=65.7

Q ss_pred             CceEE-EEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285          10 LVTCF-VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus        10 dg~v~-iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      ++.+. +||+..     ... ..+.+|...+..++|+|+|+.|++++.++.+.+||+.+...                  
T Consensus       357 ~~~l~~~~d~~~-----~~~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp  430 (1045)
T 1k32_A          357 EGDFLGIYDYRT-----GKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD  430 (1045)
T ss_dssp             TEEEEEEEETTT-----CCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred             CCceEEEEECCC-----CCc-eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC
Confidence            45677 778865     332 33447888899999999999999999999999999976432                  


Q ss_pred             -----cceecC----------CcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 -----AANSKD----------QTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 -----~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                           ++++.+          +.|.+||+.+++ ...+..+...+..+.|++
T Consensus       431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp  481 (1045)
T 1k32_A          431 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA  481 (1045)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT
T ss_pred             CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC
Confidence                 334333          489999999876 555555655566666653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.53  E-value=3.1e-07  Score=59.59  Aligned_cols=75  Identities=9%  Similarity=0.053  Sum_probs=53.8

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCC-CcEEEEecC--CCCc--------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKD-QTIKLWDVR--KFNG--------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~~wd~~--~~~~--------------   70 (118)
                      +.|+.|++||+...  ........+ .+...+.+++|+|++++|++++.+ +.|.+|++.  +...              
T Consensus        12 ~~~~~v~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (343)
T 1ri6_A           12 PESQQIHVWNLNHE--GALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH   88 (343)
T ss_dssp             GGGTEEEEEEECTT--SCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred             CCCCeEEEEEECCC--CcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcE
Confidence            66899999999631  012333333 367788999999999988888776 899999987  3221              


Q ss_pred             ----------ccee-cCCcEEEEeCC
Q psy1285          71 ----------AANS-KDQTIKLWDVR   85 (118)
Q Consensus        71 ----------~s~~-~d~~i~iwd~~   85 (118)
                                ++++ .++.|.+||+.
T Consensus        89 ~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           89 ISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEECC
Confidence                      2333 47889999994

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.52  E-value=2.3e-06  Score=55.79  Aligned_cols=95  Identities=8%  Similarity=-0.015  Sum_probs=67.0

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecC----ccCcEEEEEeCCCCCeEEEee-CCCcEEEEecCCCCc-----------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAG----HRDGITFIDPKGDSRHLISNS-KDQTIKLWDVRKFNG-----------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~-----------   70 (118)
                      +..++.+.+||...     .+....+..    +...+..++|+|+++.+..++ .++.|.+||..+...           
T Consensus       202 ~~~~~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  276 (353)
T 3vgz_A          202 TNADGELITIDTAD-----NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLA  276 (353)
T ss_dssp             ECTTSEEEEEETTT-----TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             EcCCCeEEEEECCC-----CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCce
Confidence            34578999999986     455544432    455678899999999776555 458999999976543           


Q ss_pred             -----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                                 ++...++.|.+||..+++....+... ..+..+.|++
T Consensus       277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~  323 (353)
T 3vgz_A          277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSA  323 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECT
T ss_pred             EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcC
Confidence                       33446889999999998877666533 2455666653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.52  E-value=3.4e-06  Score=55.00  Aligned_cols=95  Identities=9%  Similarity=-0.011  Sum_probs=66.2

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccC---------cEEEEEeCCCCCeEEEee--CCCcEEEEecCCCCc------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRD---------GITFIDPKGDSRHLISNS--KDQTIKLWDVRKFNG------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~------   70 (118)
                      ..++.|.+||...     .+....+..+..         .+.++.|+|+++.++.++  .++.|.+||..+...      
T Consensus       108 ~~~~~v~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~  182 (353)
T 3vgz_A          108 TVNSAVTAIDAKT-----GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN  182 (353)
T ss_dssp             TTTTEEEEEETTT-----CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC
T ss_pred             cCCCEEEEEeCCC-----CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC
Confidence            4568999999986     555555554332         268899999999777665  478899999875432      


Q ss_pred             -----------------cceecCCcEEEEeCCCCcceeeecc----cCcceeeEeeee
Q psy1285          71 -----------------AANSKDQTIKLWDVRKFSNKTAQRN----TFRAVCEQNWEY  107 (118)
Q Consensus        71 -----------------~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~  107 (118)
                                       +.++.++.|.+||..+++....+..    +...+..+.|++
T Consensus       183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  240 (353)
T 3vgz_A          183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT  240 (353)
T ss_dssp             CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred             CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence                             4456688999999999887765542    233344556654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.49  E-value=4.4e-07  Score=64.98  Aligned_cols=78  Identities=12%  Similarity=0.029  Sum_probs=57.9

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccC---cEEEEEeCCCCCeEEEeeC---------CCcEEEEecCCCCc-----
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRD---GITFIDPKGDSRHLISNSK---------DQTIKLWDVRKFNG-----   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~-----   70 (118)
                      +.|+.|++||+..     ++....+..|..   .+.+++|||||+.|+.++.         ++.+.+||+.+...     
T Consensus        33 ~~d~~i~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~  107 (719)
T 1z68_A           33 SADNNIVLYNIET-----GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE  107 (719)
T ss_dssp             CTTSCEEEEESSS-----CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred             cCCCCEEEEEcCC-----CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee
Confidence            3589999999987     555555554433   3889999999999998876         78999999864321     


Q ss_pred             ----------------cceecCCcEEEEeCCCCcce
Q psy1285          71 ----------------AANSKDQTIKLWDVRKFSNK   90 (118)
Q Consensus        71 ----------------~s~~~d~~i~iwd~~~~~~~   90 (118)
                                      +....++.|++||+.++...
T Consensus       108 l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~  143 (719)
T 1z68_A          108 LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF  143 (719)
T ss_dssp             CCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred             cCcccccceECCCCCEEEEEECCeEEEEeCCCCCcE
Confidence                            22235789999999877654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.48  E-value=1.2e-06  Score=62.82  Aligned_cols=74  Identities=11%  Similarity=0.101  Sum_probs=53.7

Q ss_pred             eEEEEeCCCCCCCCCCceeeecCccC------------------------cEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285          12 TCFVWDRRTLNETTAKPVGVLAGHRD------------------------GITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~~~~~~~h~~------------------------~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      .|++||+..     ++....+..+..                        .+.+++|+|||+.|++++. +.|.+||+.+
T Consensus        65 ~i~~~d~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~  138 (741)
T 2ecf_A           65 DLWSYDIGS-----GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQ  138 (741)
T ss_dssp             EEEEEETTT-----CCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSS
T ss_pred             EEEEEECCC-----CceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCC
Confidence            899999986     444444443322                        3788999999999998876 8999999987


Q ss_pred             C---Cc---------------------cceecCCcEEEEeCCCCccee
Q psy1285          68 F---NG---------------------AANSKDQTIKLWDVRKFSNKT   91 (118)
Q Consensus        68 ~---~~---------------------~s~~~d~~i~iwd~~~~~~~~   91 (118)
                      .   ..                     +....++.|.+||+.++....
T Consensus       139 ~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          139 EGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             CSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred             CCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE
Confidence            6   32                     222335689999998876543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.43  E-value=2.6e-06  Score=55.06  Aligned_cols=96  Identities=15%  Similarity=0.081  Sum_probs=64.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecC-ccC-cEEEEEeCCCCCeE-EEeeCCCcEEEEecCCCCc------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAG-HRD-GITFIDPKGDSRHL-ISNSKDQTIKLWDVRKFNG------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-h~~-~v~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~------------   70 (118)
                      +.+.++.|++||+..     .+....+.. +.. .+..++|+|+++.+ +++..++.|.+||+.+...            
T Consensus         6 ~~~~~~~v~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~   80 (337)
T 1pby_B            6 APARPDKLVVIDTEK-----MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEETTTEEEEEETTT-----TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             EcCCCCeEEEEECCC-----CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence            567799999999986     566665552 211 47889999999765 4566678999999864221            


Q ss_pred             ----------------ccee------------cCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 ----------------AANS------------KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ----------------~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                                      ++++            .++.|.+||+.+.+....+.. ...+..+.|++
T Consensus        81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~  144 (337)
T 1pby_B           81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR  144 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT
T ss_pred             cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC
Confidence                            2232            368999999988776655542 22344555543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.35  E-value=5.4e-06  Score=53.58  Aligned_cols=76  Identities=8%  Similarity=-0.021  Sum_probs=58.4

Q ss_pred             eEEEEeCCCCCCCCCCc-eeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------------
Q psy1285          12 TCFVWDRRTLNETTAKP-VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------------   70 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------------   70 (118)
                      .|.+||+..     .+. ...+..+...+.+++|+|+++.++++  ++.|.+||+.+...                    
T Consensus       220 ~v~~~d~~~-----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  292 (337)
T 1pby_B          220 GLLTMDLET-----GEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGS  292 (337)
T ss_dssp             EEEEEETTT-----CCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSC
T ss_pred             ceEEEeCCC-----CCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCC
Confidence            578999986     332 33344566778899999999998887  78999999876432                    


Q ss_pred             --cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 --AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 --~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                        ++++.++.|.+||+.+++....+.
T Consensus       293 ~l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          293 TVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEcCCCcEEEEECcCCcEEEEEE
Confidence              445678999999999998877665

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.34  E-value=8.9e-06  Score=52.75  Aligned_cols=75  Identities=8%  Similarity=0.088  Sum_probs=54.0

Q ss_pred             cCceEEEEeCCCCCCCCCCc-eeeecCccCcEEEEEeCCCCCeEEEeeCCC---cEEEEecCCCCc--------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKP-VGVLAGHRDGITFIDPKGDSRHLISNSKDQ---TIKLWDVRKFNG--------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~--------------   70 (118)
                      .++.|.+||+..     ... ...+..+.....+++|+|+++++++...++   .|.+||+.+...              
T Consensus        60 ~~~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  134 (331)
T 3u4y_A           60 FCQTLVQIETQL-----EPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIA  134 (331)
T ss_dssp             TTCEEEEEECSS-----SSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEE
T ss_pred             CCCeEEEEECCC-----CceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceE
Confidence            377999999986     454 556665666655599999999988655553   899999976432              


Q ss_pred             ---------cceecCCc-EEEEeCCCCc
Q psy1285          71 ---------AANSKDQT-IKLWDVRKFS   88 (118)
Q Consensus        71 ---------~s~~~d~~-i~iwd~~~~~   88 (118)
                               ++...++. |.+|++....
T Consensus       135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g  162 (331)
T 3u4y_A          135 ISPNGNGLILIDRSSANTVRRFKIDADG  162 (331)
T ss_dssp             ECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred             ECCCCCEEEEEecCCCceEEEEEECCCC
Confidence                     33445577 9999987543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.33  E-value=1e-05  Score=56.77  Aligned_cols=68  Identities=7%  Similarity=-0.003  Sum_probs=54.3

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCC--cEEEEecCCCCc------------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQ--TIKLWDVRKFNG------------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~------------------   70 (118)
                      +.|++||+..     ++. ..+..|.+.+..++|+|||+.|+++..++  .|.+||+.+...                  
T Consensus       175 ~~i~~~d~~~-----g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          175 VSLFTSNLSS-----GGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             EEEEEEETTT-----CCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEE
T ss_pred             eEEEEEcCCC-----CCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccc
Confidence            7799999876     333 35677888899999999999999888888  899999765321                  


Q ss_pred             ------------cceecCCcEEEEeC
Q psy1285          71 ------------AANSKDQTIKLWDV   84 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~   84 (118)
                                  ++++.++++++|++
T Consensus       249 ~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          249 TWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             cceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                        34567889999999

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.33  E-value=3.6e-06  Score=54.50  Aligned_cols=75  Identities=11%  Similarity=0.077  Sum_probs=50.8

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEee-CCCcEEEEecC---CCCc---------------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNS-KDQTIKLWDVR---KFNG---------------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~wd~~---~~~~---------------   70 (118)
                      ++.|++|++.... .....+..+..+ +.+..++|+|+++.+++++ .++.|.+||+.   ....               
T Consensus        59 ~~~v~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  136 (343)
T 1ri6_A           59 EFRVLAYRIAPDD-GALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANI  136 (343)
T ss_dssp             TTEEEEEEECTTT-CCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEE
T ss_pred             CCeEEEEEecCCC-CceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEE
Confidence            3899999997210 012233444433 3788999999999876665 48899999993   1110               


Q ss_pred             -------ccee-cCCcEEEEeCCC
Q psy1285          71 -------AANS-KDQTIKLWDVRK   86 (118)
Q Consensus        71 -------~s~~-~d~~i~iwd~~~   86 (118)
                             ++++ .++.|.+||+.+
T Consensus       137 s~dg~~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A          137 SPDNRTLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCCCEEEEecCCCCEEEEEEecC
Confidence                   3344 789999999987

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.29  E-value=1.4e-05  Score=54.16  Aligned_cols=93  Identities=10%  Similarity=0.026  Sum_probs=67.9

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------   70 (118)
                      +.++.|++||++..     ........|...+.++.+.+.  .++++..||.+.+||+.+...                 
T Consensus       103 ~~~~~l~v~dv~sl-----~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~~~~Vs~v~WSpkG~  175 (388)
T 1xip_A          103 STRNALYSLDLEEL-----SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQL  175 (388)
T ss_dssp             EESSEEEEEESSST-----TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEE
T ss_pred             EcCCcEEEEEchhh-----hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccccCCceEEEEcCCce
Confidence            37799999999873     333344556777888887643  388899999999999986542                 


Q ss_pred             cceecCCcEEEEeCCCCcc--eeee------c---ccCcceeeEeeee
Q psy1285          71 AANSKDQTIKLWDVRKFSN--KTAQ------R---NTFRAVCEQNWEY  107 (118)
Q Consensus        71 ~s~~~d~~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~~~  107 (118)
                      +.|..|+++++|+......  ...+      .   .+...|..+.|..
T Consensus       176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~  223 (388)
T 1xip_A          176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS  223 (388)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred             EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec
Confidence            6678899999999887764  3333      1   2556788888863

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.28  E-value=4.6e-06  Score=54.22  Aligned_cols=57  Identities=14%  Similarity=-0.086  Sum_probs=42.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCcc-CcEEEEEeCCCCCeE-EEeeCCCcEEEEecCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHR-DGITFIDPKGDSRHL-ISNSKDQTIKLWDVRK   67 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l-~s~~~d~~i~~wd~~~   67 (118)
                      +.+.+++|++||...     .+....+..+. ..+..++|+|+++.+ ++...++.|.+||+.+
T Consensus        16 ~~~~~~~v~~~d~~~-----~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t   74 (349)
T 1jmx_B           16 VTNYPNNLHVVDVAS-----DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT   74 (349)
T ss_dssp             EEETTTEEEEEETTT-----TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EeCCCCeEEEEECCC-----CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC
Confidence            567789999999986     56666665332 257789999999865 4556789999999864

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.27  E-value=4.4e-06  Score=56.65  Aligned_cols=94  Identities=14%  Similarity=0.080  Sum_probs=65.9

Q ss_pred             cccCceEEEEeCCCCC------CCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc----------
Q psy1285           7 VASLVTCFVWDRRTLN------ETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----------   70 (118)
                      ++....+++|++....      ....++.... .+.. |..++|  ++..|+++ .++.|++||+++...          
T Consensus        54 a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~  128 (388)
T 1xip_A           54 AASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKP  128 (388)
T ss_dssp             EEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSC
T ss_pred             EeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecc
Confidence            3444577779876421      0001222222 3666 999999  89999988 889999999876533          


Q ss_pred             -----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeec
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRR  109 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  109 (118)
                                 +.+..||.|.+||++......    +...|+++.|+++-
T Consensus       129 v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG  174 (388)
T 1xip_A          129 VFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ  174 (388)
T ss_dssp             EEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE
T ss_pred             eeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc
Confidence                       556789999999999777542    34578999998765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.21  E-value=6.4e-06  Score=58.86  Aligned_cols=53  Identities=9%  Similarity=-0.022  Sum_probs=41.8

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      +.++.+++||+..     .+.. .+..+...+.+++|+|+|+.|+.. .|+.|.+||+.+
T Consensus        98 ~~~~~i~~~d~~~-----~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~  150 (706)
T 2z3z_A           98 FTQGGLVGFDMLA-----RKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGK  150 (706)
T ss_dssp             EETTEEEEEETTT-----TEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBC
T ss_pred             EECCEEEEEECCC-----CceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCc
Confidence            4568999999976     3333 344567778899999999999885 689999999865

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.20  E-value=2.8e-05  Score=55.79  Aligned_cols=52  Identities=10%  Similarity=-0.006  Sum_probs=41.0

Q ss_pred             CceEEEEeCCCCCCCCCC--ceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285          10 LVTCFVWDRRTLNETTAK--PVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      ++.|++||+..     ..  ....+..|...+.+++|+|||+.|+.++ ++.|.+||+.+
T Consensus       128 ~~~i~~~d~~~-----~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~  181 (741)
T 2ecf_A          128 GGELYLYDLKQ-----EGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS  181 (741)
T ss_dssp             TTEEEEEESSS-----CSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred             CCcEEEEECCC-----CCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence            37899999986     31  3344566788899999999999999886 56899999864

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.18  E-value=1.8e-06  Score=60.57  Aligned_cols=87  Identities=7%  Similarity=-0.167  Sum_probs=58.8

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCC----CcEEEEecCCCCc--------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKD----QTIKLWDVRKFNG--------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~--------------   70 (118)
                      .++.+.+||+..     ++... +..+..  .+++|+|||+.+++++.+    +.|.+||+.+...              
T Consensus       130 ~~~~~~l~d~~~-----g~~~~-l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~  201 (582)
T 3o4h_A          130 TEDRVALYALDG-----GGLRE-LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSAS  201 (582)
T ss_dssp             CSSCEEEEEEET-----TEEEE-EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEE
T ss_pred             CCCCceEEEccC-----CcEEE-eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccce
Confidence            344555999875     34333 332333  789999999999988776    7899999875433              


Q ss_pred             --------cceecCC--cEEEEeCCCCcceeeecccCcceeeEe
Q psy1285          71 --------AANSKDQ--TIKLWDVRKFSNKTAQRNTFRAVCEQN  104 (118)
Q Consensus        71 --------~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~  104 (118)
                              +++..++  .|.+||+.+++.. .+..+...+..+.
T Consensus       202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~  244 (582)
T 3o4h_A          202 ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR  244 (582)
T ss_dssp             ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC
T ss_pred             ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh
Confidence                    4445567  8999999887766 4445554454444

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.12  E-value=2.6e-05  Score=51.33  Aligned_cols=95  Identities=7%  Similarity=0.013  Sum_probs=57.1

Q ss_pred             cCceEEEEeCCCCCCCCCCceeee---cCccCcEEEEEeCCCCCeEEEeeC--CCcEEEEecC--CCCc-----------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVL---AGHRDGITFIDPKGDSRHLISNSK--DQTIKLWDVR--KFNG-----------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~--d~~i~~wd~~--~~~~-----------   70 (118)
                      .++.|.+|++..+.   ......+   ..+......++|+|++++|+++..  ++.|.+|++.  +...           
T Consensus       231 ~~~~v~v~~~~~g~---~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~  307 (361)
T 3scy_A          231 IGGTVIAFRYADGM---LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIH  307 (361)
T ss_dssp             TTCEEEEEEEETTE---EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             CCCeEEEEEecCCc---eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCC
Confidence            47899999987521   1222222   223345689999999998866554  5899999985  2111           


Q ss_pred             -------------ccee-cCCcEEEEeC--CCCcceeee-cccCcceeeEeee
Q psy1285          71 -------------AANS-KDQTIKLWDV--RKFSNKTAQ-RNTFRAVCEQNWE  106 (118)
Q Consensus        71 -------------~s~~-~d~~i~iwd~--~~~~~~~~~-~~~~~~v~~~~~~  106 (118)
                                   ++++ .++.|.+|++  .+++..... ..+...+.++.|.
T Consensus       308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence                         3333 5688999644  455443322 1233456666663

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.08  E-value=1.7e-05  Score=56.69  Aligned_cols=52  Identities=8%  Similarity=-0.056  Sum_probs=37.2

Q ss_pred             CceEEEEeCCCCCCCCCCc--eeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285          10 LVTCFVWDRRTLNETTAKP--VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      ++.+.+||+..     ++.  +....+|...+..++|+|||+.|+.++. +.|.+||+.+
T Consensus        90 ~~~i~~~d~~~-----~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~  143 (723)
T 1xfd_A           90 TGYYVLSKIPH-----GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG  143 (723)
T ss_dssp             CSEEEEEESSS-----CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS
T ss_pred             eeeEEEEECCC-----CceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC
Confidence            47899999986     332  2222345555888999999999988775 6888888753

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.05  E-value=2.4e-05  Score=51.80  Aligned_cols=53  Identities=13%  Similarity=0.085  Sum_probs=40.1

Q ss_pred             eEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285          12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      .|.+||+..     ++......++...+..+.|+|+++.|+..+.++.+.+||+.+..
T Consensus        61 ~l~~~d~~~-----g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~  113 (388)
T 3pe7_A           61 NYYLLDLNT-----QVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE  113 (388)
T ss_dssp             EEEEEETTT-----CEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             eEEEEeCCC-----CceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            477778765     45554445555555567899999999999999999999998754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.04  E-value=3.3e-05  Score=57.84  Aligned_cols=92  Identities=10%  Similarity=0.028  Sum_probs=69.0

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccC-cEEEEEeCCCCCeEEEeeCCCcEE-EEecCCCCc-----------------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRD-GITFIDPKGDSRHLISNSKDQTIK-LWDVRKFNG-----------------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~i~-~wd~~~~~~-----------------   70 (118)
                      ++.+.+|+...     .. ...+..|.+ .+..+.|+ +++.++.++.+..+. +||+.....                 
T Consensus       316 ~~~i~~~~~~~-----~~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~Sp  388 (1045)
T 1k32_A          316 RGQAFIQDVSG-----TY-VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR  388 (1045)
T ss_dssp             TTEEEEECTTS-----SB-EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT
T ss_pred             cCEEEEEcCCC-----Cc-eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECC
Confidence            67889998875     33 233566777 89999999 999999988887888 888764321                 


Q ss_pred             -----cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -----AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -----~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                           ++++.++.|++||+.+++.......+...+..+.|++.
T Consensus       389 DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpD  431 (1045)
T 1k32_A          389 NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDN  431 (1045)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTT
T ss_pred             CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCC
Confidence                 66778889999999988776555567666777777643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.03  E-value=5.3e-05  Score=49.54  Aligned_cols=54  Identities=9%  Similarity=0.117  Sum_probs=41.5

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEee-CCCcEEEEecC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNS-KDQTIKLWDVR   66 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~wd~~   66 (118)
                      ++.|++||+..+   ....+..+..+...+..++|+|++++|++++ .++.+.+|++.
T Consensus        62 ~~~v~~~~~~~g---~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           62 EGGIAAWQIDGQ---TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             EEEEEEEEEETT---EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CceEEEEEecCC---cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence            689999999641   1224444455677888999999999888777 67899999985

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.01  E-value=8.5e-05  Score=48.86  Aligned_cols=56  Identities=5%  Similarity=-0.058  Sum_probs=38.3

Q ss_pred             cCceEEEEeCCCCCCCCC----C-c------eeeecCccCcEEEEEeCCCCCeEEEee-CCCcEEEEecCC
Q psy1285           9 SLVTCFVWDRRTLNETTA----K-P------VGVLAGHRDGITFIDPKGDSRHLISNS-KDQTIKLWDVRK   67 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~----~-~------~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~wd~~~   67 (118)
                      .++.|++|++....   .    + .      .............++|+|++++++..+ .++.|.+||+.+
T Consensus       175 ~~~~v~v~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~  242 (361)
T 3scy_A          175 GTDQIHKFNINPNA---NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD  242 (361)
T ss_dssp             TTTEEEEEEECTTC---CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred             CCCEEEEEEEcCCC---CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence            46789999887521   1    1 1      111123445678999999999887666 689999999863

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.00  E-value=3.5e-05  Score=55.10  Aligned_cols=48  Identities=8%  Similarity=-0.091  Sum_probs=36.5

Q ss_pred             CcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------------cceecCCcEEEEeCCC
Q psy1285          37 DGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------------AANSKDQTIKLWDVRK   86 (118)
Q Consensus        37 ~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------------~s~~~d~~i~iwd~~~   86 (118)
                      ..+.+++|+|+ ..++.+ .++.+.+||+.+...                     +..+.++.|.+||+.+
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~  150 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGK  150 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCc
Confidence            46899999999 665554 459999999875432                     2235688999999988

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.00  E-value=9.3e-05  Score=48.37  Aligned_cols=96  Identities=9%  Similarity=-0.025  Sum_probs=57.9

Q ss_pred             ccCceEEEEeCCCCCCCCCCc--eeeecCc-cCcEEEEEeCCCCCeEEE-eeCCCcEEEEecCC--CC------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKP--VGVLAGH-RDGITFIDPKGDSRHLIS-NSKDQTIKLWDVRK--FN------------   69 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~--~~~~~~h-~~~v~~~~~~~~~~~l~s-~~~d~~i~~wd~~~--~~------------   69 (118)
                      ..++.|++|++...    +..  ...+..+ ...+..++|+|+|++++. ...++.+.+|++..  ..            
T Consensus       159 ~~~~~v~~~~~~~~----g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~  234 (347)
T 3hfq_A          159 LGSDKVYVYNVSDA----GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA  234 (347)
T ss_dssp             TTTTEEEEEEECTT----SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT
T ss_pred             CCCCEEEEEEECCC----CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC
Confidence            34678999999731    222  2222222 235778999999996655 56688999998763  10            


Q ss_pred             -----c---------------cceecCCcEEEEeCCCC---cceeeecccCcceeeEeeee
Q psy1285          70 -----G---------------AANSKDQTIKLWDVRKF---SNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        70 -----~---------------~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~  107 (118)
                           .               ++...++.|.+|++...   .....+..+...+..+.|++
T Consensus       235 ~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp  295 (347)
T 3hfq_A          235 DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP  295 (347)
T ss_dssp             TCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT
T ss_pred             CCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC
Confidence                 0               34455789999998732   22333333334455555653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.97  E-value=1.2e-05  Score=57.60  Aligned_cols=49  Identities=16%  Similarity=0.108  Sum_probs=36.9

Q ss_pred             CceEEEEeCCCCCCCCCCce--eeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285          10 LVTCFVWDRRTLNETTAKPV--GVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      ++.|++||+..     ++..  ..+   ...+..++|||||+.|+.+. ++.|.+||+.+
T Consensus        89 ~~~i~~~d~~~-----g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~  139 (719)
T 1z68_A           89 TATYYIYDLSN-----GEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG  139 (719)
T ss_dssp             EEEEEEEETTT-----TEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred             ceEEEEEECCC-----Cccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCC
Confidence            68999999986     3321  112   24578899999999999875 78999999853

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.87  E-value=0.00011  Score=49.01  Aligned_cols=78  Identities=17%  Similarity=0.315  Sum_probs=57.1

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEee----------CCCcEEEEecCCCCc-------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNS----------KDQTIKLWDVRKFNG-------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~-------   70 (118)
                      ..|+.|.+||..+     .+....+.....+  .++|+|+++++.++.          .+++|.+||..+...       
T Consensus        28 ~~d~~v~v~D~~t-----~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~  100 (361)
T 2oiz_A           28 LTESRVHVYDYTN-----GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLP  100 (361)
T ss_dssp             GGGCEEEEEETTT-----CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEEC
T ss_pred             cccCeEEEEECCC-----CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcC
Confidence            4578999999876     5666666655444  899999999988775          367899999875321       


Q ss_pred             ----------------------ccee-c-CCcEEEEeCCCCcceee
Q psy1285          71 ----------------------AANS-K-DQTIKLWDVRKFSNKTA   92 (118)
Q Consensus        71 ----------------------~s~~-~-d~~i~iwd~~~~~~~~~   92 (118)
                                            .++. . +++|.+||+.+.+....
T Consensus       101 ~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A          101 PKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             TTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             ccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence                                  2233 2 57899999998877655

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.80  E-value=3.9e-05  Score=55.51  Aligned_cols=77  Identities=10%  Similarity=0.039  Sum_probs=55.0

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCc-----EEEEEeCCCCCeEEEeeCC---------CcEEEEecCCCCc----
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDG-----ITFIDPKGDSRHLISNSKD---------QTIKLWDVRKFNG----   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~----   70 (118)
                      .|++|++||+.+     ++....+.+|...     ...+.|||||+.|+.++.+         +.+.+||+.+...    
T Consensus        34 ~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~  108 (740)
T 4a5s_A           34 QENNILVFNAEY-----GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE  108 (740)
T ss_dssp             ETTEEEEEETTT-----CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred             cCCcEEEEECCC-----CceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc
Confidence            389999999987     4555556665532     2347889999999988876         5567999976432    


Q ss_pred             -----------------cceecCCcEEEEeCCCCcce
Q psy1285          71 -----------------AANSKDQTIKLWDVRKFSNK   90 (118)
Q Consensus        71 -----------------~s~~~d~~i~iwd~~~~~~~   90 (118)
                                       +.-..++.|.+||+.++...
T Consensus       109 ~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~  145 (740)
T 4a5s_A          109 RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY  145 (740)
T ss_dssp             CCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred             cCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE
Confidence                             33345789999999876643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.72  E-value=0.00075  Score=47.88  Aligned_cols=82  Identities=15%  Similarity=0.079  Sum_probs=61.0

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC--CCCc--------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR--KFNG--------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~--------------   70 (118)
                      ...+++|.++|..+     .+.+..+. ....+..+.|+|+++++.+++.|+.|.+||+.  +...              
T Consensus       173 ~~~~~~V~viD~~t-----~~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia  246 (567)
T 1qks_A          173 LRDAGQIALIDGST-----YEIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  246 (567)
T ss_dssp             ETTTTEEEEEETTT-----CCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             eCCCCeEEEEECCC-----CeEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeE
Confidence            44578999999987     66666665 23456789999999999999999999999995  3221              


Q ss_pred             -------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 -------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 -------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                                   ++...+++|.++|..+.+.+..+.
T Consensus       247 ~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~  283 (567)
T 1qks_A          247 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS  283 (567)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             EccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence                         112235788999988887766544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.70  E-value=9.5e-05  Score=47.93  Aligned_cols=53  Identities=8%  Similarity=0.052  Sum_probs=38.1

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      ++.|.+||+..     .+....+. ....+.+++|+|+++.|++++.++.|.+||..+.
T Consensus       274 ~~~v~~~d~~~-----~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          274 LNRLAKYDLKQ-----RKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             ESEEEEEETTT-----TEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             cCeEEEEECcc-----CeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence            67899999876     55555554 2345678999999988877766677777776554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.69  E-value=0.00099  Score=43.96  Aligned_cols=69  Identities=12%  Similarity=0.014  Sum_probs=48.9

Q ss_pred             CCceeeecCccCcEEE-----EEeCCCCCeEEEeeC-CCc--EEEEecCCCCc-----------------------ccee
Q psy1285          26 AKPVGVLAGHRDGITF-----IDPKGDSRHLISNSK-DQT--IKLWDVRKFNG-----------------------AANS   74 (118)
Q Consensus        26 ~~~~~~~~~h~~~v~~-----~~~~~~~~~l~s~~~-d~~--i~~wd~~~~~~-----------------------~s~~   74 (118)
                      +.....+..|......     .+|+|||+.|+..+. ++.  +.+||+.+...                       +.++
T Consensus        20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~   99 (388)
T 3pe7_A           20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK   99 (388)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred             CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence            5566667767665555     789999999998877 664  77788765322                       4455


Q ss_pred             cCCcEEEEeCCCCcceeeec
Q psy1285          75 KDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        75 ~d~~i~iwd~~~~~~~~~~~   94 (118)
                      .++.|.+||+.+++......
T Consensus       100 ~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A          100 DGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             TTTEEEEEETTTCCEEEEEE
T ss_pred             CCCeEEEEECCCCcceeeee
Confidence            67789999999887654433

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.66  E-value=0.00063  Score=49.25  Aligned_cols=50  Identities=6%  Similarity=-0.079  Sum_probs=38.3

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      +.+.+||+.+     ++. ..+..|.+.+...+|||||+.|+.+ .|+.|.+||+.+
T Consensus        92 ~~~~~~d~~~-----~~~-~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~  141 (740)
T 4a5s_A           92 ASYDIYDLNK-----RQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN  141 (740)
T ss_dssp             EEEEEEETTT-----TEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT
T ss_pred             eEEEEEECCC-----CcE-EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCC
Confidence            5677999986     332 2355677889999999999999887 467899998754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.58  E-value=9.5e-05  Score=49.46  Aligned_cols=82  Identities=10%  Similarity=0.055  Sum_probs=46.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ..+.||.|..||..+     ++.+-.+..  +.+.+..+..++..+++++.|+.+..||..+...               
T Consensus        14 ~gs~dg~v~a~d~~t-----G~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A           14 VSTLDGSLHAVSKRT-----GSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             EEETTSEEEEEETTT-----CCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             EEcCCCEEEEEECCC-----CCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            356689999999987     566555543  4444444556677788888999999999865332               


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                               ++++.++.|..||.++++....+.
T Consensus        87 p~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~  119 (369)
T 2hz6_A           87 PCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLS  119 (369)
T ss_dssp             SCC-----CCCCEEEEEEEEECCC---------
T ss_pred             ceEecCCEEEEEeCCCEEEEEECCCCcEEEEec
Confidence                     456678899999999888766544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.57  E-value=0.0012  Score=41.87  Aligned_cols=53  Identities=8%  Similarity=0.141  Sum_probs=38.8

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecC--ccCcEEEEEeCCCCCeEEEeeCCC-cEEEEecC
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAG--HRDGITFIDPKGDSRHLISNSKDQ-TIKLWDVR   66 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~-~i~~wd~~   66 (118)
                      ..++.|++||..      ...+..+..  +...+..++++++++++++...++ .|.+||..
T Consensus       182 ~~~~~i~~~~~~------g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          182 NRAHCVKVFNYE------GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             GGGTEEEEEETT------CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             CCCCEEEEEcCC------CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence            346788999875      344444433  335788999999999888887776 99999864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.54  E-value=0.00025  Score=47.20  Aligned_cols=50  Identities=12%  Similarity=0.258  Sum_probs=37.9

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      ++|.+||+.+     .+.+.++..+.  +.+++|+|++++|.+++. ++|.+||..+.
T Consensus       286 ~~v~viD~~t-----~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          286 AEIWVMDTKT-----KQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             SEEEEEETTT-----TEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             ceEEEEECCC-----CcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            4899999987     67778887665  899999999998887654 55555555443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.53  E-value=0.0021  Score=41.98  Aligned_cols=92  Identities=5%  Similarity=-0.065  Sum_probs=60.2

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeec----------CccCcEEEEEeCCC-CCeEEEeeCCCcEEEEecCCCCc-------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLA----------GHRDGITFIDPKGD-SRHLISNSKDQTIKLWDVRKFNG-------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~-------   70 (118)
                      .++.|++||..      +..+..+.          ++......++++|+ ++++++...++.|++||..+...       
T Consensus       164 ~~~~I~~~~~~------g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~  237 (329)
T 3fvz_A          164 CNSRIVQFSPS------GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA  237 (329)
T ss_dssp             SCCEEEEECTT------SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred             CCCeEEEEcCC------CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence            46788888854      34444443          23345889999998 77777777889999999873221       


Q ss_pred             ------------------------cceecCCcEEEEeCCCCcceeeec---ccCcceeeEeee
Q psy1285          71 ------------------------AANSKDQTIKLWDVRKFSNKTAQR---NTFRAVCEQNWE  106 (118)
Q Consensus        71 ------------------------~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~  106 (118)
                                              ++...+..|++||+.+++....+.   .+......+.++
T Consensus       238 ~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~  300 (329)
T 3fvz_A          238 SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS  300 (329)
T ss_dssp             TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEEC
T ss_pred             ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEEC
Confidence                                    222334589999998888776652   333445555554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.51  E-value=0.00051  Score=45.30  Aligned_cols=53  Identities=11%  Similarity=0.081  Sum_probs=35.8

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCc-EEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDG-ITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      ..|.+||+..     .+... +..+... ...+.|+|+++.|+..+.++.+.+||+....
T Consensus        60 ~~l~~~d~~~-----~~~~~-l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           60 RNYYLLNLET-----QQAVQ-LTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             CEEEEEETTT-----TEEEE-CCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             ceEEEEECCC-----CcEEE-eecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence            4677777765     33322 2223333 2337899999999999999899999987643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.42  E-value=0.00055  Score=48.57  Aligned_cols=33  Identities=0%  Similarity=-0.221  Sum_probs=28.2

Q ss_pred             ccCcEEEEEeCCCCCeEEEeeCC----------CcEEEEecCC
Q psy1285          35 HRDGITFIDPKGDSRHLISNSKD----------QTIKLWDVRK   67 (118)
Q Consensus        35 h~~~v~~~~~~~~~~~l~s~~~d----------~~i~~wd~~~   67 (118)
                      |...+..++|+|||+.|+..+.+          ..|.+||+.+
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence            56678899999999999988876          5799999876

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.37  E-value=0.0021  Score=42.49  Aligned_cols=54  Identities=11%  Similarity=-0.096  Sum_probs=38.9

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeec----CccCcEEEEEeCCCCCeEEEee-CCCcEEEEecC
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLA----GHRDGITFIDPKGDSRHLISNS-KDQTIKLWDVR   66 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~wd~~   66 (118)
                      .++.+++|++...    +.....+.    .+...+.+++|+|+|++++++. .++.|.+||+.
T Consensus       117 ~~g~v~v~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~  175 (365)
T 1jof_A          117 FAGYGNVFSVSET----GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL  175 (365)
T ss_dssp             SCCEEEEEEECTT----CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEccCCC----CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC
Confidence            5889999999731    33322222    2456789999999999887665 36789999986

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.34  E-value=0.0054  Score=38.84  Aligned_cols=52  Identities=10%  Similarity=0.238  Sum_probs=38.4

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeec--CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLA--GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      .++.|.+||..      ......+.  .+...+.+++++++++.+++...++.|.+||..
T Consensus       140 ~~~~i~~~~~~------g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  193 (286)
T 1q7f_A          140 KVMRVIIFDQN------GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE  193 (286)
T ss_dssp             TTTEEEEECTT------SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred             CCCEEEEEcCC------CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC
Confidence            45788888864      33444443  345568999999999888887788999999975

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.32  E-value=0.0036  Score=40.54  Aligned_cols=52  Identities=8%  Similarity=-0.056  Sum_probs=38.4

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      +.++.++.|.        ......+..+...+.+++|+++++.++++..++.|.+||..+
T Consensus        24 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~   75 (333)
T 2dg1_A           24 ISESELQTIT--------AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET   75 (333)
T ss_dssp             CCGGGSCEEE--------CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             eecccCcccc--------cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence            4566777772        334445556666788999999999777888889999998764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.31  E-value=0.01  Score=37.79  Aligned_cols=53  Identities=2%  Similarity=-0.095  Sum_probs=41.4

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      ..++.|..||...     .  ...+..+...+.+++++++++++++...++.|.+||..+
T Consensus        47 ~~~~~i~~~~~~~-----~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           47 VRQNRTWAWSDDG-----Q--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             GGGTEEEEEETTS-----C--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             CCCCEEEEEECCC-----C--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            3467888888875     3  455566777899999999999887777778899999854

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.28  E-value=0.0048  Score=43.77  Aligned_cols=53  Identities=11%  Similarity=0.052  Sum_probs=35.3

Q ss_pred             ceEEEEeCC-CCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCC--cEEEEec
Q psy1285          11 VTCFVWDRR-TLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQ--TIKLWDV   65 (118)
Q Consensus        11 g~v~iwd~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--~i~~wd~   65 (118)
                      ..|.+||+. .+..  ........+|...+..+.|+|||+.++++..++  .|.+||+
T Consensus       217 ~~i~~~d~~~~g~~--~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~  272 (662)
T 3azo_A          217 TELKTARVTEDGRF--ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP  272 (662)
T ss_dssp             EEEEEEEECTTSCE--EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECT
T ss_pred             cEEEEEEECCCCcc--cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEEC
Confidence            478888887 3100  033333344567899999999999777888888  4555554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.19  E-value=0.0028  Score=45.60  Aligned_cols=35  Identities=9%  Similarity=0.078  Sum_probs=27.2

Q ss_pred             CccCcEEEEEeCCCCCeEE-----EeeCCCcEEEEecCCC
Q psy1285          34 GHRDGITFIDPKGDSRHLI-----SNSKDQTIKLWDVRKF   68 (118)
Q Consensus        34 ~h~~~v~~~~~~~~~~~l~-----s~~~d~~i~~wd~~~~   68 (118)
                      +|...+..++|||||+.|+     .|+.+..|++||+.+.
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg  157 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG  157 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC
Confidence            3444688999999999998     4445678999998653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.19  E-value=0.0032  Score=45.38  Aligned_cols=51  Identities=14%  Similarity=0.019  Sum_probs=36.6

Q ss_pred             eEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCc----------------EEEEecCCC
Q psy1285          12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQT----------------IKLWDVRKF   68 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~----------------i~~wd~~~~   68 (118)
                      +|++||+..     ++...... ....+..++|+||++.|+.++.++.                |.+|++.+.
T Consensus       152 ~i~v~d~~t-----g~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~  218 (710)
T 2xdw_A          152 TIKFMKVDG-----AKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD  218 (710)
T ss_dssp             EEEEEETTT-----TEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred             EEEEEECCC-----CCCCcccc-cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCC
Confidence            899999986     44433222 1223567999999999998887765                999998653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.16  E-value=0.0032  Score=40.91  Aligned_cols=50  Identities=10%  Similarity=0.086  Sum_probs=34.2

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCC---Cc--EEEEecCCC
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKD---QT--IKLWDVRKF   68 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~--i~~wd~~~~   68 (118)
                      .++.|.+||+..     .+. ..+    ..+..+.|+|+|+.|+..+.+   +.  |.+||+...
T Consensus        41 ~~~~l~~~d~~~-----~~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g   95 (347)
T 2gop_A           41 YENTIVIENLKN-----NAR-RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL   95 (347)
T ss_dssp             EEEEEEEEETTT-----CCE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT
T ss_pred             ccceEEEEeCCC-----Cce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC
Confidence            367788888875     332 223    457889999999998877653   33  667776643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.09  E-value=0.0007  Score=45.24  Aligned_cols=79  Identities=14%  Similarity=0.000  Sum_probs=45.8

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc----------------
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----------------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----------------   70 (118)
                      .+.|+.++.||..+     ++.+-.+..+.    ...++|++..+++++.|+.+..||.++...                
T Consensus        98 g~~dg~v~a~D~~t-----G~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~  168 (369)
T 2hz6_A           98 GKKQDIWYVIDLLT-----GEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPED  168 (369)
T ss_dssp             CEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCC
T ss_pred             EeCCCEEEEEECCC-----CcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccccCccccC
Confidence            45688999999987     45444443332    234567778888888999999999876543                


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                              ..++.|+.|..||.++++......
T Consensus       169 ~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          169 DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence                    234668999999999998876654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.01  E-value=0.0096  Score=38.92  Aligned_cols=81  Identities=16%  Similarity=0.104  Sum_probs=57.7

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------   70 (118)
                      ..++.|.++|..+     .+.+.++. .......++++++++..++...++.|.+||..+...                 
T Consensus        61 ~~~~~v~viD~~t-----~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~  134 (328)
T 3dsm_A           61 NNSHVIFAIDINT-----FKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE  134 (328)
T ss_dssp             GGGTEEEEEETTT-----CCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC
T ss_pred             cCCCEEEEEECcc-----cEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc
Confidence            3568999999987     66666664 346678999988885555554789999999875321                 


Q ss_pred             ---------ccee--cCCcEEEEeCCCCcceeeec
Q psy1285          71 ---------AANS--KDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 ---------~s~~--~d~~i~iwd~~~~~~~~~~~   94 (118)
                               ..+.  .++.|.++|+.+.+....+.
T Consensus       135 ~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~  169 (328)
T 3dsm_A          135 QMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELT  169 (328)
T ss_dssp             CEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred             eEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence                     1222  37789999999887665443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.97  E-value=0.0088  Score=37.39  Aligned_cols=54  Identities=4%  Similarity=-0.133  Sum_probs=36.9

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      ++.|.+||...     .........+...+.++++.++|+..++...++.|.+||....
T Consensus       170 ~~~i~~~~~~~-----~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          170 NNRVVKLEAES-----NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             GTEEEEECTTT-----CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             CCEEEEEecCC-----CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            46778888764     2222222223366889999999987777777889999988653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.86  E-value=0.011  Score=37.87  Aligned_cols=53  Identities=9%  Similarity=-0.044  Sum_probs=40.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCcc-CcEEEEEeCCCCCeEEEeeCCCcEEEEec
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHR-DGITFIDPKGDSRHLISNSKDQTIKLWDV   65 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~~wd~   65 (118)
                      ..+.|+.|.+||..+     ++.+-.+..+. ..+.++.+.|+|+.+++  .++.|..||.
T Consensus        10 ~~~~~~~v~~~d~~t-----G~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~   63 (276)
T 3no2_A           10 GGSGWNKIAIINKDT-----KEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR   63 (276)
T ss_dssp             ECTTCSEEEEEETTT-----TEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT
T ss_pred             eeCCCCEEEEEECCC-----CeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC
Confidence            456789999999976     67777776554 46789999999998884  4566766665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.82  E-value=0.037  Score=34.49  Aligned_cols=74  Identities=3%  Similarity=-0.017  Sum_probs=47.9

Q ss_pred             CceEEEEeCCCCCCCCCCceeeec-CccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLA-GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      ++.|.+||...     ... ..+. .....+.++++.++++..++...++.|.+|+..+...                  
T Consensus        86 ~~~i~~~d~~~-----~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~  159 (270)
T 1rwi_B           86 NNRVVTLAAGS-----NNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN  159 (270)
T ss_dssp             TTEEEEECTTC-----SCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT
T ss_pred             CCEEEEEeCCC-----ceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC
Confidence            56788888764     222 2222 2235688999999998777777788899887643221                  


Q ss_pred             -----cceecCCcEEEEeCCCCcc
Q psy1285          71 -----AANSKDQTIKLWDVRKFSN   89 (118)
Q Consensus        71 -----~s~~~d~~i~iwd~~~~~~   89 (118)
                           ++...++.|.+||......
T Consensus       160 ~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          160 SGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             CCCEEEEECCCCEEEEEecCCCce
Confidence                 3333456788888776544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.81  E-value=0.0064  Score=43.73  Aligned_cols=52  Identities=12%  Similarity=-0.083  Sum_probs=36.6

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcE--EEEEeCCCCCeEEEeeCCCc-------------EEEEecCCC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGI--TFIDPKGDSRHLISNSKDQT-------------IKLWDVRKF   68 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~s~~~d~~-------------i~~wd~~~~   68 (118)
                      +.+|++||+.++     +.+.  ..+...+  ..++|+|||+.|+..+.|..             |.+|++.+.
T Consensus       146 ~~~i~v~dl~tg-----~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~  212 (695)
T 2bkl_A          146 EAVLHVIDVDSG-----EWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTE  212 (695)
T ss_dssp             CCEEEEEETTTC-----CBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSC
T ss_pred             eEEEEEEECCCC-----CCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCC
Confidence            478999999873     3220  1122222  57899999999999888766             999998654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.79  E-value=0.0066  Score=39.59  Aligned_cols=54  Identities=19%  Similarity=0.191  Sum_probs=42.6

Q ss_pred             cCceEEEEeCCCCCCCCCCceeee---cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVL---AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      .+..|++||...     +..+..+   .++...+..++++|+|..+++...++.|.+|++..
T Consensus       266 ~~~~v~~~~~~~-----g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          266 EPVQGFVMNFSS-----GEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCCCEEEEETTT-----CCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             CCcEEEEEEcCC-----CeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            345899999876     5666665   35677789999999998888888889999998753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.69  E-value=0.055  Score=34.68  Aligned_cols=72  Identities=10%  Similarity=-0.046  Sum_probs=49.6

Q ss_pred             ccCcEEEEEeCCCCCeE-EEeeCCCcEEEEecC--CCC--------------c--------------cceecCCcEEEEe
Q psy1285          35 HRDGITFIDPKGDSRHL-ISNSKDQTIKLWDVR--KFN--------------G--------------AANSKDQTIKLWD   83 (118)
Q Consensus        35 h~~~v~~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~~--------------~--------------~s~~~d~~i~iwd   83 (118)
                      .....+.++|+|+++.| ++.+.++.|.+||+.  +..              .              ++....+.|..||
T Consensus       147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d  226 (297)
T 3g4e_A          147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD  226 (297)
T ss_dssp             EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred             ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence            34456889999999866 455567889999863  211              0              3333456799999


Q ss_pred             CCCCcceeeecccCcceeeEeee
Q psy1285          84 VRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                      ..+++....+......++++.|.
T Consensus       227 ~~tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          227 PVTGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             TTTCCEEEEEECSSSBEEEEEEE
T ss_pred             CCCceEEEEEECCCCCceEEEEe
Confidence            98888777666555567888886

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.53  E-value=0.018  Score=37.76  Aligned_cols=65  Identities=9%  Similarity=-0.015  Sum_probs=42.1

Q ss_pred             CCceeeecCccCc-----EEEEEeCCCCCeEEEeeCC---CcEEEEecCCCCc-----------------------ccee
Q psy1285          26 AKPVGVLAGHRDG-----ITFIDPKGDSRHLISNSKD---QTIKLWDVRKFNG-----------------------AANS   74 (118)
Q Consensus        26 ~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~-----------------------~s~~   74 (118)
                      +.....+..+...     +..++|+|+|+.|+.....   ..+.+||+.+...                       +.++
T Consensus        20 g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~   99 (396)
T 3c5m_A           20 QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVK   99 (396)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEE
T ss_pred             CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEE
Confidence            4444555444332     6778999999998766443   3677888765321                       3455


Q ss_pred             cCCcEEEEeCCCCcce
Q psy1285          75 KDQTIKLWDVRKFSNK   90 (118)
Q Consensus        75 ~d~~i~iwd~~~~~~~   90 (118)
                      .++.|.+||+.+++..
T Consensus       100 ~~~~l~~~d~~~~~~~  115 (396)
T 3c5m_A          100 NELNLMKVDLETLEEQ  115 (396)
T ss_dssp             TTTEEEEEETTTCCEE
T ss_pred             cCCcEEEEECCCCCcE
Confidence            5667899998877644

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.47  E-value=0.014  Score=41.99  Aligned_cols=35  Identities=14%  Similarity=0.007  Sum_probs=26.7

Q ss_pred             ccCcEEEEEeCCCCCeEEEeeCCC-----cEEEEecCCCC
Q psy1285          35 HRDGITFIDPKGDSRHLISNSKDQ-----TIKLWDVRKFN   69 (118)
Q Consensus        35 h~~~v~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~   69 (118)
                      |...+..++|||||+.|+.+..++     .|++||+.+..
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~  162 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK  162 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC
Confidence            334578899999999998665433     89999998653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.36  E-value=0.028  Score=36.24  Aligned_cols=55  Identities=15%  Similarity=0.031  Sum_probs=39.0

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCC----CcEEEEecCC
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKD----QTIKLWDVRK   67 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~~wd~~~   67 (118)
                      ..++.|.+||...     .+.......+...+.+++++++++++++...+    +.|.+||...
T Consensus        63 ~~~~~i~~~d~~~-----~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~  121 (333)
T 2dg1_A           63 VFEGNIFKINPET-----KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  121 (333)
T ss_dssp             TTTCEEEEECTTT-----CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             CCCCEEEEEeCCC-----CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC
Confidence            3467888888765     34333333456789999999999887776666    6888898654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.18  E-value=0.12  Score=32.86  Aligned_cols=72  Identities=8%  Similarity=-0.015  Sum_probs=48.4

Q ss_pred             ecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC-C----------------Cc---------cceecCCcEEEEeCC
Q psy1285          32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK-F----------------NG---------AANSKDQTIKLWDVR   85 (118)
Q Consensus        32 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~----------------~~---------~s~~~d~~i~iwd~~   85 (118)
                      +..+......++|+|+++.+++...++.|.+||+.. .                ..         ..+. ++.|.+||..
T Consensus       167 ~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~  245 (296)
T 3e5z_A          167 PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD  245 (296)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT
T ss_pred             eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC
Confidence            344566778999999999887777788999998751 0                01         1222 6789999986


Q ss_pred             CCcceeeecccCcceeeEeee
Q psy1285          86 KFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        86 ~~~~~~~~~~~~~~v~~~~~~  106 (118)
                       ++....+..+.. +..+.|.
T Consensus       246 -g~~~~~~~~~~~-~~~~~f~  264 (296)
T 3e5z_A          246 -GDELGRVLTPQT-TSNLCFG  264 (296)
T ss_dssp             -SCEEEEEECSSC-CCEEEEE
T ss_pred             -CCEEEEEECCCC-ceeEEEE
Confidence             555555544444 6666664

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.16  E-value=0.041  Score=37.34  Aligned_cols=78  Identities=13%  Similarity=0.125  Sum_probs=54.4

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEee----------CCCcEEEEecCCCCc---------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNS----------KDQTIKLWDVRKFNG---------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~---------   70 (118)
                      ++.|.+.|..+     .+.+.++..-..+  .+.++|+++.+..+.          .++.|.+||..+...         
T Consensus        58 ~~~V~ViD~~t-----~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g  130 (386)
T 3sjl_D           58 VTQQFVIDGEA-----GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA  130 (386)
T ss_dssp             SEEEEEEETTT-----TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred             CCEEEEEECCC-----CeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc
Confidence            67899999987     6666666532333  499999999876654          367899999875321         


Q ss_pred             ---------------------ccee--cCCcEEEEeCCCCcceeeec
Q psy1285          71 ---------------------AANS--KDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 ---------------------~s~~--~d~~i~iwd~~~~~~~~~~~   94 (118)
                                           ..+.  .++.|.++|+.+.+....+.
T Consensus       131 ~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~  177 (386)
T 3sjl_D          131 PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  177 (386)
T ss_dssp             CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             cccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence                                 2222  25789999998888776554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.12  E-value=0.093  Score=34.20  Aligned_cols=76  Identities=11%  Similarity=-0.069  Sum_probs=50.5

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCc-cCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGH-RDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------------   70 (118)
                      +.|.++|..+     .+....+... ......++++|+++.|.....  .|.+||..+...                   
T Consensus       203 ~~v~~id~~t-----~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vd  275 (328)
T 3dsm_A          203 PSLYRIDAET-----FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVN  275 (328)
T ss_dssp             CEEEEEETTT-----TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEEC
T ss_pred             ceEEEEECCC-----CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEc
Confidence            6788888875     4544444321 235789999999888876654  888999865321                   


Q ss_pred             -------cce----ecCCcEEEEeCCCCcceeeec
Q psy1285          71 -------AAN----SKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 -------~s~----~~d~~i~iwd~~~~~~~~~~~   94 (118)
                             ++.    ..++.|.+||.. ++....+.
T Consensus       276 p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          276 PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             CCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence                   333    346778888887 66665554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=96.04  E-value=0.034  Score=36.66  Aligned_cols=53  Identities=9%  Similarity=0.066  Sum_probs=36.5

Q ss_pred             CceEEEEeCC-CCCCCCCCceeeec--CccCcEEEEEeCCCCCeEEEeeC-CCcEEEEec
Q psy1285          10 LVTCFVWDRR-TLNETTAKPVGVLA--GHRDGITFIDPKGDSRHLISNSK-DQTIKLWDV   65 (118)
Q Consensus        10 dg~v~iwd~~-~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~-d~~i~~wd~   65 (118)
                      ++.|++||+. .+.   ...+..+.  .|...+..++|+|+|+++++++. ++.|.+|++
T Consensus       166 ~~~v~~~~~~~~g~---~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~  222 (365)
T 1jof_A          166 ANKLWTHRKLASGE---VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TTEEEEEEECTTSC---EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEEECCCCC---EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence            5789999997 411   11223333  24566899999999998877664 678888864

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.03  E-value=0.058  Score=39.05  Aligned_cols=37  Identities=8%  Similarity=0.068  Sum_probs=29.8

Q ss_pred             CcEEEEecCCCCc----------------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          58 QTIKLWDVRKFNG----------------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        58 ~~i~~wd~~~~~~----------------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                      +.+..||+.+.+.                      +.++.|+.+++||.++++.+..+.
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence            6788888876443                      456789999999999999988775

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=95.87  E-value=0.043  Score=37.25  Aligned_cols=72  Identities=11%  Similarity=-0.020  Sum_probs=53.4

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCc-------cCcEEEEEeCCCCCeEEEeeC--CCcEEEEecCCCCc----------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGH-------RDGITFIDPKGDSRHLISNSK--DQTIKLWDVRKFNG----------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~----------   70 (118)
                      ++.|.+||..+     .+.+.++.--       ......+.|+|||+++.....  ++.|.++|+.+...          
T Consensus       108 ~~~VsviD~~t-----~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~  182 (386)
T 3sjl_D          108 TDYVEVFDPVT-----LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY  182 (386)
T ss_dssp             EEEEEEECTTT-----CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE
T ss_pred             CCEEEEEECCC-----CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcc
Confidence            57899999987     5666555311       123567899999998887653  68999999987643          


Q ss_pred             ----------cceecCCcEEEEeCCC
Q psy1285          71 ----------AANSKDQTIKLWDVRK   86 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~   86 (118)
                                ++.+.||++.+.++..
T Consensus       183 ~~~P~g~~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          183 HIFPTAPDTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             eeecCCCceeEEECCCCCEEEEECCC
Confidence                      3557789999998876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=95.74  E-value=0.022  Score=36.86  Aligned_cols=38  Identities=24%  Similarity=0.255  Sum_probs=25.1

Q ss_pred             eEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeC
Q psy1285          12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSK   56 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   56 (118)
                      .|.+||+..     ++...... +.. +..+.|+|+++.|+..+.
T Consensus        86 ~l~~~~~~~-----g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~  123 (347)
T 2gop_A           86 EIWVADLET-----LSSKKILE-AKN-IRSLEWNEDSRKLLIVGF  123 (347)
T ss_dssp             EEEEEETTT-----TEEEEEEE-ESE-EEEEEECTTSSEEEEEEE
T ss_pred             eEEEEECCC-----CceEEEEc-CCC-ccceeECCCCCEEEEEEc
Confidence            466667764     34333332 333 899999999999887764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=95.68  E-value=0.055  Score=36.25  Aligned_cols=53  Identities=9%  Similarity=0.079  Sum_probs=37.2

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCC-eEEEee-CCCcEEEEecCCCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSR-HLISNS-KDQTIKLWDVRKFN   69 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~-~d~~i~~wd~~~~~   69 (118)
                      +.|.+.|..+     .+.+.++. -.....++.|+||++ .+.++. .++.|.++|..+.+
T Consensus       298 ~~V~VID~~t-----~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          298 KEVTSVTGLV-----GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             CeEEEEECCC-----CEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence            5688888876     66666664 334578999999998 666665 36677777766554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=95.65  E-value=0.22  Score=31.77  Aligned_cols=80  Identities=8%  Similarity=-0.088  Sum_probs=51.4

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCc-cCcEEEEEeCCCCCeEEEeeC-CCcEEEEecCCCC-----------c----
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGH-RDGITFIDPKGDSRHLISNSK-DQTIKLWDVRKFN-----------G----   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~-----------~----   70 (118)
                      +.++.|..||. .     ++.+-.+... ...+.++.+.++|+.+++.+. ++.+..+|.....           .    
T Consensus        53 s~~~~V~~~d~-~-----G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~  126 (276)
T 3no2_A           53 SYSKGAKMITR-D-----GRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQ  126 (276)
T ss_dssp             ECBSEEEEECT-T-----SCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGS
T ss_pred             eCCCCEEEECC-C-----CCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCccccc
Confidence            34566777777 4     5666666543 346788889999999888766 5556555532100           0    


Q ss_pred             -------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 -------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 -------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                                   ++...++.|..||.. ++....+.
T Consensus       127 ~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~  162 (276)
T 3no2_A          127 FRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVK  162 (276)
T ss_dssp             CSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE
T ss_pred             ccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEE
Confidence                         444567888888887 77666554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.62  E-value=0.16  Score=36.90  Aligned_cols=38  Identities=16%  Similarity=0.133  Sum_probs=30.9

Q ss_pred             CCcEEEEecCCCCc----------------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          57 DQTIKLWDVRKFNG----------------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        57 d~~i~~wd~~~~~~----------------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                      ++.+..||+.+.+.                      ..|+.|+.|+.||.++++.+.++.
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence            36788999887543                      557789999999999999988775

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=95.55  E-value=0.4  Score=34.83  Aligned_cols=56  Identities=16%  Similarity=0.063  Sum_probs=36.1

Q ss_pred             CceEEEEeCCCCCCCCCCceeeec--CccCcEEEEEeCCCCCeEEEeeCC-----CcEEEEecCCC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLA--GHRDGITFIDPKGDSRHLISNSKD-----QTIKLWDVRKF   68 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~   68 (118)
                      ...|++|++.+..   ......+.  .+...+..+.|+|||++|+..+.+     ..|.+||+.+.
T Consensus       242 ~~~v~~~~lgt~~---~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          242 NQTVWLHRLGTPQ---SADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             CCEEEEEETTSCG---GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             CCEEEEEECCCCc---hhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence            3458888886521   11122222  233458899999999988876654     37999998654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=95.41  E-value=0.075  Score=38.56  Aligned_cols=50  Identities=12%  Similarity=0.010  Sum_probs=32.9

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCc--------------EEEEecCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQT--------------IKLWDVRK   67 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~--------------i~~wd~~~   67 (118)
                      .+|++||+..     ++.+.. ..+...+..++|+|| +.|+.++.++.              |.+|++.+
T Consensus       189 ~~i~v~dl~t-----g~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt  252 (741)
T 1yr2_A          189 RTVKFVGVAD-----GKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGT  252 (741)
T ss_dssp             EEEEEEETTT-----CCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTS
T ss_pred             EEEEEEECCC-----CCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCC
Confidence            5799999987     443322 112222357889999 88888776554              88888754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=95.36  E-value=0.44  Score=33.88  Aligned_cols=60  Identities=8%  Similarity=-0.009  Sum_probs=42.4

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeC----CCCCeEEEeeC-CCcEEEEecCCCCc
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPK----GDSRHLISNSK-DQTIKLWDVRKFNG   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~~~-d~~i~~wd~~~~~~   70 (118)
                      ++.|+.|.+||+...   +.+.+.++.. ......+.|+    |+|+++.++.. ++.+.++|..+...
T Consensus       214 ~~~dg~V~viD~~~~---t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~  278 (567)
T 1qks_A          214 IGRDGKVNMIDLWMK---EPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP  278 (567)
T ss_dssp             EETTSEEEEEETTSS---SCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             EcCCCeEEEEECCCC---CCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE
Confidence            456889999999510   1455566653 3346789999    69998876654 58999999876543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=95.20  E-value=0.14  Score=32.49  Aligned_cols=54  Identities=6%  Similarity=0.091  Sum_probs=36.7

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEE-EeeCCCcEEEEecCC
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLI-SNSKDQTIKLWDVRK   67 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~~wd~~~   67 (118)
                      .++.|.+||..+     .+....+..+...+.+++|+++++.|. +...++.|..|++..
T Consensus       245 ~~~~i~~~d~~~-----g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          245 GSSHIEVFGPDG-----GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTTEEEEECTTC-----BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEcCCC-----CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            456788888764     344444555557789999999998554 444566777777653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.17  E-value=0.18  Score=32.55  Aligned_cols=81  Identities=12%  Similarity=0.060  Sum_probs=52.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEE--EEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGIT--FIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      ..+.+|.|+++|+.+     ++....+  -....+  .+.+.. ++.....-.++.+.++|..++..             
T Consensus        70 stG~~g~v~~iD~~T-----gkv~~~~--l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGL  141 (268)
T 3nok_A           70 STGHQGTLRQLSLES-----AQPVWME--RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGL  141 (268)
T ss_dssp             EETTTTEEEECCSSC-----SSCSEEE--ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCE
T ss_pred             EcCCCCEEEEEECCC-----CcEEeEE--CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEE
Confidence            456677899999987     5555554  222333  355543 23444455688999999987553             


Q ss_pred             -------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 -------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                             ..+..+++|.++|..+.+....+.
T Consensus       142 t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~  172 (268)
T 3nok_A          142 CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQ  172 (268)
T ss_dssp             EEETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             ecCCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence                   222347789999999988776554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=94.97  E-value=0.36  Score=32.28  Aligned_cols=74  Identities=9%  Similarity=-0.125  Sum_probs=48.9

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCc-------cCcEEEEEeCCCCCeEEEeeC--CCcEEEEecCCCCc----------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGH-------RDGITFIDPKGDSRHLISNSK--DQTIKLWDVRKFNG----------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~----------   70 (118)
                      ++.|.++|..+     .+.+..+..-       ......+.++|+|++|..+..  ++.|.++| .+...          
T Consensus        96 ~~~v~viD~~t-----~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~  169 (373)
T 2mad_H           96 TDYVEVFDPVT-----FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC  169 (373)
T ss_pred             CCeEEEEECCC-----CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce
Confidence            57899999876     4444443211       123457899999999987764  57899999 76432          


Q ss_pred             -----------cceecCCcEEEEeCCCCcce
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNK   90 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~   90 (118)
                                 ++.+.|+++.++|. +++..
T Consensus       170 ~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~  199 (373)
T 2mad_H          170 YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA  199 (373)
T ss_pred             EEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence                       12235778888888 55443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=94.95  E-value=0.18  Score=31.95  Aligned_cols=60  Identities=17%  Similarity=0.196  Sum_probs=37.9

Q ss_pred             cCceEEEEeCCC-CCCCCCCceeeecCcc-CcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC
Q psy1285           9 SLVTCFVWDRRT-LNETTAKPVGVLAGHR-DGITFIDPKGDSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         9 ~dg~v~iwd~~~-~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      .++.|.+||... +..........+..+. ..+..+++.++|+..++...++.|.+||..+.
T Consensus       196 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g  257 (314)
T 1pjx_A          196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred             CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC
Confidence            356788888652 1000001222233333 56788999999988888777889999998743

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=94.04  E-value=0.39  Score=33.01  Aligned_cols=77  Identities=14%  Similarity=0.129  Sum_probs=53.6

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEee----------CCCcEEEEecCCCCc----------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNS----------KDQTIKLWDVRKFNG----------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~----------   70 (118)
                      +.|.+.|..+     .+.+.++..=..+  .+.++||++.+..+.          .++.|.++|..+...          
T Consensus        99 ~~VsVID~~t-----~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~  171 (426)
T 3c75_H           99 TQQFVIDGST-----GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP  171 (426)
T ss_dssp             EEEEEEETTT-----TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred             CeEEEEECCC-----CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence            7999999987     6666666522333  899999999877665          367899999875321          


Q ss_pred             --------------------ccee-c-CCcEEEEeCCCCcceeeec
Q psy1285          71 --------------------AANS-K-DQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 --------------------~s~~-~-d~~i~iwd~~~~~~~~~~~   94 (118)
                                          ..+. . ++.|.+.|+.+.+....+.
T Consensus       172 r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence                                2222 2 5678888988887766554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=94.01  E-value=0.24  Score=34.00  Aligned_cols=54  Identities=19%  Similarity=0.172  Sum_probs=37.8

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCC-eEEEee-CCCcEEEEecCCCC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSR-HLISNS-KDQTIKLWDVRKFN   69 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~-~d~~i~~wd~~~~~   69 (118)
                      ++.|.+.|..+     .+.+.++.. ......+.|+|+++ ++.+.. .++.|.++|..+..
T Consensus       349 s~~VsVID~~T-----~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          349 SRFVVVLNAET-----GERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             EEEEEEEETTT-----CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCEEEEEECCC-----CeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            35788888876     666666652 23578999999998 777765 36667777766554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=93.96  E-value=0.16  Score=34.09  Aligned_cols=52  Identities=12%  Similarity=0.105  Sum_probs=34.1

Q ss_pred             eEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCe-EEEee-CCCcEEEEecCCCC
Q psy1285          12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRH-LISNS-KDQTIKLWDVRKFN   69 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~-~d~~i~~wd~~~~~   69 (118)
                      .+.++|+.+     .+.+.++... .....+.|+|+++. +.+.. .+++|.++|+.+..
T Consensus       295 ~~~ViD~~t-----~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          295 NTSSVTASV-----GQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEEEESSS-----CCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CEEEEECCC-----CeEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            445889887     5666666532 25789999999975 44554 36666666665543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=93.51  E-value=0.16  Score=34.20  Aligned_cols=50  Identities=12%  Similarity=0.103  Sum_probs=37.7

Q ss_pred             eEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEee----------CCCcEEEEecCCC
Q psy1285          12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNS----------KDQTIKLWDVRKF   68 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~   68 (118)
                      +|.+.|..+     .+.+.++..-..+  .+.++|+++.+..+.          .+++|.+||..+.
T Consensus        47 ~vsvID~~t-----~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~  106 (368)
T 1mda_H           47 ENWVSCAGC-----GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF  106 (368)
T ss_dssp             EEEEEETTT-----TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred             eEEEEECCC-----CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            788888876     6777776532334  799999999887775          3688999998763

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=93.32  E-value=0.88  Score=29.25  Aligned_cols=78  Identities=8%  Similarity=0.048  Sum_probs=48.6

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEE-EeeCCCcEEEEecCCCCc-------------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLI-SNSKDQTIKLWDVRKFNG-------------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~-------------------   70 (118)
                      ..|+++|+.+     ++....+.. ....+..-..+++..|. ..-.++.+.++|..++..                   
T Consensus        65 S~v~~vD~~T-----gkv~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~  138 (262)
T 3nol_A           65 SSIRKVDIES-----GKTLQQIEL-GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQY  138 (262)
T ss_dssp             EEEEEECTTT-----CCEEEEEEC-CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEECSSC
T ss_pred             ceEEEEECCC-----CcEEEEEec-CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEecCCCE
Confidence            3889999987     566655542 22333322222344443 444588999999987654                   


Q ss_pred             -cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 -AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 -~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                       ..+..+.+|.++|..+.+....+.
T Consensus       139 L~~SdGs~~i~~iDp~T~~v~~~I~  163 (262)
T 3nol_A          139 LIMSDGTPVLRFLDPESLTPVRTIT  163 (262)
T ss_dssp             EEECCSSSEEEEECTTTCSEEEEEE
T ss_pred             EEEECCCCeEEEEcCCCCeEEEEEE
Confidence             222235679999999888776654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=93.30  E-value=0.97  Score=28.85  Aligned_cols=32  Identities=16%  Similarity=0.075  Sum_probs=23.9

Q ss_pred             ccCcEEEEEeCCCCCeEEEeeCC------CcEEEEecC
Q psy1285          35 HRDGITFIDPKGDSRHLISNSKD------QTIKLWDVR   66 (118)
Q Consensus        35 h~~~v~~~~~~~~~~~l~s~~~d------~~i~~wd~~   66 (118)
                      .......++|+|+++.|..+...      +.|.+|++.
T Consensus       186 ~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~  223 (305)
T 3dr2_A          186 DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWR  223 (305)
T ss_dssp             EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEE
T ss_pred             cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEec
Confidence            34556789999999977666554      688888864

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=93.00  E-value=1  Score=28.97  Aligned_cols=78  Identities=14%  Similarity=0.075  Sum_probs=49.5

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      .++.+.++|..+     .+.+.++.- ...-..+  ++++..|.....++.|.++|..++..                  
T Consensus       105 ~~~~v~v~D~~t-----~~~~~ti~~-~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE  176 (262)
T 3nol_A          105 KNGLGFVWNIRN-----LRQVRSFNY-DGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE  176 (262)
T ss_dssp             SSSEEEEEETTT-----CCEEEEEEC-SSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred             eCCEEEEEECcc-----CcEEEEEEC-CCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence            467888889877     666666652 2221333  34566666666678899999887543                  


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                               +..-.+..|.+-|.++++....+.
T Consensus       177 Le~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id  209 (262)
T 3nol_A          177 LEWVDGEIFANVWQTNKIVRIDPETGKVTGIID  209 (262)
T ss_dssp             EEEETTEEEEEETTSSEEEEECTTTCBEEEEEE
T ss_pred             eEEECCEEEEEEccCCeEEEEECCCCcEEEEEE
Confidence                     111135577777888888765543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=92.96  E-value=1  Score=28.08  Aligned_cols=52  Identities=6%  Similarity=-0.070  Sum_probs=33.5

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      ++.|.+||...     .............+.++++.++++..++...++.|..||..
T Consensus        35 ~~~v~~~d~~~-----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           35 ANMISCINLDG-----KITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             TTEEEEECTTC-----CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCcEEEEcCCC-----CeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            46677777652     11111122244678899999999887777667778888754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=92.86  E-value=0.44  Score=34.40  Aligned_cols=35  Identities=23%  Similarity=0.188  Sum_probs=26.2

Q ss_pred             ccCcEEEEEeCCCCCeEEE-----eeCCCcEEEEecCCCC
Q psy1285          35 HRDGITFIDPKGDSRHLIS-----NSKDQTIKLWDVRKFN   69 (118)
Q Consensus        35 h~~~v~~~~~~~~~~~l~s-----~~~d~~i~~wd~~~~~   69 (118)
                      +...+..++|||||+.++-     |+.+..|+++|+.+..
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~  166 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ  166 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC
Confidence            4446788899999998883     3333579999998765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=92.30  E-value=1.6  Score=28.64  Aligned_cols=47  Identities=6%  Similarity=0.001  Sum_probs=34.2

Q ss_pred             CCeEEEeeCCCcEEEEecCCCCc---------------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          48 SRHLISNSKDQTIKLWDVRKFNG---------------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        48 ~~~l~s~~~d~~i~~wd~~~~~~---------------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                      +..+..++.++.+..+|..+...                     ..++.++.|..+|.++++......
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~  170 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVN  170 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence            45666777888888888876443                     455678889999998888765443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=91.52  E-value=1.6  Score=27.15  Aligned_cols=50  Identities=12%  Similarity=-0.050  Sum_probs=32.3

Q ss_pred             CceEEEEeCCCCCCCCCCce-eeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEec
Q psy1285          10 LVTCFVWDRRTLNETTAKPV-GVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV   65 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~   65 (118)
                      ++.|.+||..      .... .........+..+++.++++..++...++.|..+|.
T Consensus       119 ~~~i~~~d~~------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  169 (299)
T 2z2n_A          119 GNRIGRITDD------GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE  169 (299)
T ss_dssp             TTEEEEECTT------CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CceEEEECCC------CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence            4567777762      2221 112234456889999999987777666777888876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=91.36  E-value=0.73  Score=29.35  Aligned_cols=61  Identities=8%  Similarity=-0.082  Sum_probs=38.3

Q ss_pred             cCceEEEEeCC--CCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285           9 SLVTCFVWDRR--TLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         9 ~dg~v~iwd~~--~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      .++.|.+||+.  .+..........+..+.+....+++.++|++.++....+.|..||..+..
T Consensus       169 ~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          169 LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred             CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence            35678888864  21100011122233344567889999999887777778889999987543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=91.32  E-value=0.53  Score=34.19  Aligned_cols=55  Identities=7%  Similarity=-0.048  Sum_probs=38.7

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      +|.|+.||+.+     ++.+-....+ .......+...+.++..++.|+.++.||.++.+.
T Consensus       454 ~g~l~A~D~~t-----G~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          454 SGKLIAWDPVK-----QQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             EEEEEEEETTT-----TEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ceeEEEEECCC-----CCeEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence            58999999987     5554444322 2233334455677888899999999999998764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=91.05  E-value=1.8  Score=27.93  Aligned_cols=54  Identities=7%  Similarity=-0.039  Sum_probs=37.0

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      .++.+.++|..+     .+.+.++.- ...-..++  +++..|.....++.+.++|..++..
T Consensus       114 ~~~~v~V~D~~T-----l~~~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v  167 (268)
T 3nok_A          114 TEGLLFTWSGMP-----PQRERTTRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL  167 (268)
T ss_dssp             SSCEEEEEETTT-----TEEEEEEEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCE
T ss_pred             cCCEEEEEECCc-----CcEEEEEeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeE
Confidence            478889999887     677666652 22223443  5577777666788999999887653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=90.44  E-value=3.6  Score=29.32  Aligned_cols=38  Identities=11%  Similarity=-0.015  Sum_probs=30.1

Q ss_pred             CCcEEEEecCCCCc----------------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          57 DQTIKLWDVRKFNG----------------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        57 d~~i~~wd~~~~~~----------------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                      ++.+.-||+.+.+.                      ..++.|+.++.||.++++.+.++.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence            56788888776543                      457789999999999999988775

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=89.95  E-value=2.7  Score=29.83  Aligned_cols=38  Identities=13%  Similarity=0.024  Sum_probs=28.9

Q ss_pred             CCcEEEEecCCCCc----------------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          57 DQTIKLWDVRKFNG----------------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        57 d~~i~~wd~~~~~~----------------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                      ++.+..||..+.+.                      ..++.|+.|..+|.++++.+.++.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence            46777777765433                      446778999999999999887765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=89.65  E-value=2.7  Score=26.68  Aligned_cols=77  Identities=9%  Similarity=-0.020  Sum_probs=48.8

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEE--EEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGIT--FIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      ..|+.+|+.+     ++......-- ...+  .+++.. ++.....-.++.+.++|..++..                  
T Consensus        43 S~v~~vD~~t-----gkv~~~~~l~-~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~  115 (243)
T 3mbr_X           43 SSVRKVDLET-----GRILQRAEVP-PPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALTSDDS  115 (243)
T ss_dssp             CEEEEEETTT-----CCEEEEEECC-TTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEEECSS
T ss_pred             ceEEEEECCC-----CCEEEEEeCC-CCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEeeCCC
Confidence            4899999987     5666555422 2222  333332 33334445688999999987553                  


Q ss_pred             --cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 --AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 --~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                        ..+..+++|.++|..+.+....+.
T Consensus       116 ~L~vSdgs~~l~~iDp~t~~~~~~I~  141 (243)
T 3mbr_X          116 HLYMSDGTAVIRKLDPDTLQQVGSIK  141 (243)
T ss_dssp             CEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCeEEEEEE
Confidence              223346789999999988776654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=89.52  E-value=3.5  Score=27.81  Aligned_cols=51  Identities=14%  Similarity=0.014  Sum_probs=31.4

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCC--cEEEEecC
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQ--TIKLWDVR   66 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--~i~~wd~~   66 (118)
                      .++.|++||...     ......... ..... ++|+++++.|..+..++  .|.+++..
T Consensus       150 ~~~~I~~id~~~-----g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          150 DDPRVRLISVDD-----NKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             TTTEEEEEETTT-----TEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred             CCCcEEEEECCC-----CEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence            346788888764     233222222 22233 88999999888877765  67776643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=89.38  E-value=2.4  Score=27.19  Aligned_cols=56  Identities=9%  Similarity=-0.048  Sum_probs=40.1

Q ss_pred             EEEEEeCCCCCeEEEeeC--CCcEEEEecCCCCc-----------------------cceecCCcEEEEeCCCCcceeee
Q psy1285          39 ITFIDPKGDSRHLISNSK--DQTIKLWDVRKFNG-----------------------AANSKDQTIKLWDVRKFSNKTAQ   93 (118)
Q Consensus        39 v~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~-----------------------~s~~~d~~i~iwd~~~~~~~~~~   93 (118)
                      ...+.|++++.+..+.+.  ++.|.+.|+.+...                       ++.-.++.+.++|..+.+....+
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i  102 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF  102 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence            578999988755555443  57899999987543                       33335778999999888877766


Q ss_pred             c
Q psy1285          94 R   94 (118)
Q Consensus        94 ~   94 (118)
                      .
T Consensus       103 ~  103 (266)
T 2iwa_A          103 T  103 (266)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=89.15  E-value=2.9  Score=26.48  Aligned_cols=78  Identities=18%  Similarity=0.063  Sum_probs=49.8

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      .++.+.++|..+     .+.+.++.. ...-..++  +++..|.....++.|.++|..++..                  
T Consensus        83 ~~~~v~v~D~~t-----l~~~~ti~~-~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           83 RNHEGFVYDLAT-----LTPRARFRY-PGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             SSSEEEEEETTT-----TEEEEEEEC-SSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             eCCEEEEEECCc-----CcEEEEEeC-CCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence            467888999877     677766652 22224454  4566665555688899999987643                  


Q ss_pred             --------ccee-cCCcEEEEeCCCCcceeeec
Q psy1285          71 --------AANS-KDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 --------~s~~-~d~~i~iwd~~~~~~~~~~~   94 (118)
                              .... .+..|.+-|.++++....+.
T Consensus       155 Le~~~G~lyanvw~s~~I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          155 LEWVNGELLANVWLTSRIARIDPASGKVVAWID  187 (243)
T ss_dssp             EEEETTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred             eEEeCCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence                    1112 34567777888887765443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=88.64  E-value=3  Score=26.52  Aligned_cols=50  Identities=14%  Similarity=0.062  Sum_probs=33.4

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      ++.|..|+..      +. ...+..+...+..+.+.++|+++++...++.|.+|+..
T Consensus        66 ~~~i~~~~~~------g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           66 GRRVLGWRED------GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             TTEEEEEETT------SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCEEEEEeCC------CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            4667777663      22 23344456678999999999877665556778888753

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=87.77  E-value=3.4  Score=25.59  Aligned_cols=53  Identities=4%  Similarity=-0.144  Sum_probs=33.1

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      .++.|.++|.. .    ......+......+.++.+.++++..++...++.|..+|..
T Consensus        39 ~~~~v~~~~~~-~----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           39 KANKISSLDQS-G----RIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             TTTEEEEECTT-S----CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCCeEEEECCC-C----ceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence            34667777765 1    11111222334568899999988877776667778888755

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=87.44  E-value=6.5  Score=28.38  Aligned_cols=57  Identities=12%  Similarity=0.052  Sum_probs=34.1

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecC-ccCcEEEEEeCCCCCeEEEee----CCCcEEEEecCCC
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAG-HRDGITFIDPKGDSRHLISNS----KDQTIKLWDVRKF   68 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~----~d~~i~~wd~~~~   68 (118)
                      ..|++|++.+... ....+..... |......+.++|||++|+...    .++.+.++|+.+.
T Consensus       208 ~~v~~~~lgt~~~-~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~  269 (693)
T 3iuj_A          208 HKVYFHRLGTAQE-DDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE  269 (693)
T ss_dssp             CEEEEEETTSCGG-GCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred             cEEEEEECCCCcc-cceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence            4588888765210 0112222223 445577899999999875432    2357899998654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=87.17  E-value=3.2  Score=26.62  Aligned_cols=79  Identities=14%  Similarity=0.002  Sum_probs=48.0

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc------------------
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG------------------   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------------   70 (118)
                      .++.+.++|..+     .+.+.++..-...-..  +++++..+..+..++.+.++|..+...                  
T Consensus        84 ~~~~v~viD~~t-----~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           84 LKNIGFIYDRRT-----LSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             TCSEEEEEETTT-----TEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             cCCEEEEEECCC-----CcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence            467888888876     5666666411122123  455676666656788999999887543                  


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                               +....++.|.+-|..+++....+.
T Consensus       157 le~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          157 LEYINGEVWANIWQTDCIARISAKDGTLLGWIL  189 (266)
T ss_dssp             EEEETTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred             EEEECCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence                     111124566667777777665554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=87.04  E-value=3.3  Score=26.94  Aligned_cols=34  Identities=15%  Similarity=0.183  Sum_probs=24.3

Q ss_pred             CccCcEEEEEeCCCCCeEEEeeC-----CCcEEEEecCC
Q psy1285          34 GHRDGITFIDPKGDSRHLISNSK-----DQTIKLWDVRK   67 (118)
Q Consensus        34 ~h~~~v~~~~~~~~~~~l~s~~~-----d~~i~~wd~~~   67 (118)
                      .+...+.++++.+++++.++-..     +..|.+||+.+
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t  102 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN  102 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC
Confidence            35567899999999876554332     46788888764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=86.67  E-value=1.5  Score=31.55  Aligned_cols=54  Identities=19%  Similarity=0.165  Sum_probs=36.0

Q ss_pred             ceEEEEeCCCCCCCCCCc-eeeecCccCcEEEEEeCCCCCeEEE-eeCCCcEEEEecCCC
Q psy1285          11 VTCFVWDRRTLNETTAKP-VGVLAGHRDGITFIDPKGDSRHLIS-NSKDQTIKLWDVRKF   68 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~   68 (118)
                      +.|.+.|.++..   ... +..+. -.....++.++|||+++.. +..+.+|.++|+.+.
T Consensus       254 ~~V~VID~~~~~---~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          254 NGVKVVDGRKEA---SSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             TTEEEEECSGGG---CCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             CcEEEEeCcccC---CceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence            347888887510   122 33443 2335678999999998765 456889999999854

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=86.65  E-value=4.9  Score=26.21  Aligned_cols=78  Identities=8%  Similarity=-0.037  Sum_probs=47.4

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------   70 (118)
                      +.++.+..+|...     ++..-...  ......+..  ++..+..++.++.+..+|..+...                 
T Consensus       246 ~~~g~l~~~d~~t-----G~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  316 (376)
T 3q7m_A          246 AYNGNLTALDLRS-----GQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL  316 (376)
T ss_dssp             CTTSCEEEEETTT-----CCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE
T ss_pred             ecCcEEEEEECCC-----CcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE
Confidence            3467777777765     34332222  122233332  245666666777777777765332                 


Q ss_pred             -----cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 -----AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 -----~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                           ..++.++.|..+|.++++......
T Consensus       317 ~~~~l~v~~~~g~l~~~d~~tG~~~~~~~  345 (376)
T 3q7m_A          317 YNGNLVVGDSEGYLHWINVEDGRFVAQQK  345 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence                 456678899999999988776554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=86.63  E-value=1.2  Score=32.30  Aligned_cols=55  Identities=9%  Similarity=0.060  Sum_probs=38.9

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      .|.|..||+.+     ++.+-... +...+....+...+..+..++.|+.+++||.++...
T Consensus       456 ~g~l~A~D~~t-----G~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          456 FGRLLAWDPVA-----QKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             EEEEEEEETTT-----TEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccEEEEEeCCC-----CcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence            38999999987     55443333 333344444555677888889999999999998654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=86.32  E-value=3.1  Score=30.09  Aligned_cols=38  Identities=11%  Similarity=0.094  Sum_probs=29.6

Q ss_pred             CCcEEEEecCCCCc----------------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          57 DQTIKLWDVRKFNG----------------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        57 d~~i~~wd~~~~~~----------------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                      ++.+..||..+.+.                      ..++.|+.++.||.++++.+..+.
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence            47788888876433                      556789999999999999887665

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=85.91  E-value=5.2  Score=25.79  Aligned_cols=70  Identities=9%  Similarity=-0.092  Sum_probs=43.6

Q ss_pred             cCcEEEEEeCCCCCeEEE-eeCCCcEEEEecC--CC-C--------------c--------------cceecCCcEEEEe
Q psy1285          36 RDGITFIDPKGDSRHLIS-NSKDQTIKLWDVR--KF-N--------------G--------------AANSKDQTIKLWD   83 (118)
Q Consensus        36 ~~~v~~~~~~~~~~~l~s-~~~d~~i~~wd~~--~~-~--------------~--------------~s~~~d~~i~iwd   83 (118)
                      ......++|+|+++.+.. ...++.|.+||+.  +. .              .              ++...++.|..||
T Consensus       178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d  257 (326)
T 2ghs_A          178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  257 (326)
T ss_dssp             ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence            345678999999987654 4457889999874  32 1              0              2222356788888


Q ss_pred             CCCCcceeeecccCcceeeEeee
Q psy1285          84 VRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                      . .++....+......+..+.|+
T Consensus       258 ~-~g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          258 T-DGNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             T-TCCEEEEEECSCSBEEEEEEE
T ss_pred             C-CCCEEEEEECCCCCcEEEEEe
Confidence            8 455444444344456677765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=85.48  E-value=5.6  Score=25.80  Aligned_cols=26  Identities=12%  Similarity=0.100  Sum_probs=18.6

Q ss_pred             cEEEEEeCCCCCeEEEeeCCC-cEEEE
Q psy1285          38 GITFIDPKGDSRHLISNSKDQ-TIKLW   63 (118)
Q Consensus        38 ~v~~~~~~~~~~~l~s~~~d~-~i~~w   63 (118)
                      .+..++++|+++.|..+..++ .+..+
T Consensus       196 ~~~gia~s~dg~~ly~~~~~~~~l~~~  222 (343)
T 2qe8_A          196 GVNGIVLDAENEWLYLSPMHSTSMYRI  222 (343)
T ss_dssp             CEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred             ccceeEeccCCCEEEEEeCCCCeEEEE
Confidence            368899999998887776555 34333

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=84.92  E-value=5.1  Score=24.79  Aligned_cols=52  Identities=8%  Similarity=-0.114  Sum_probs=32.1

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      ++.|..+|...     ......+......+.++++.++++..++...++.|..+|..
T Consensus        82 ~~~v~~~d~~g-----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~  133 (300)
T 2qc5_A           82 ANKIGKLSKKG-----GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD  133 (300)
T ss_dssp             TTEEEEECTTS-----CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             CCeEEEECCCC-----CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence            45666666552     11111222234568899999988887776667777777654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=84.15  E-value=7.6  Score=26.15  Aligned_cols=32  Identities=13%  Similarity=0.079  Sum_probs=25.4

Q ss_pred             CcEEEEEeCCCCCeEEEee-CCCcEEEEecCCC
Q psy1285          37 DGITFIDPKGDSRHLISNS-KDQTIKLWDVRKF   68 (118)
Q Consensus        37 ~~v~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~   68 (118)
                      .....+++++++++.++-. .++.|+.|++.+.
T Consensus       323 ~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          323 AQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             SSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             CCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence            3478899999999777777 7889999986543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=82.62  E-value=7.6  Score=25.02  Aligned_cols=57  Identities=9%  Similarity=-0.042  Sum_probs=35.3

Q ss_pred             CceEEEEeCC--CC-CCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285          10 LVTCFVWDRR--TL-NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus        10 dg~v~iwd~~--~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      ++.|.+||+.  .+ ..........+.........+.+.++|++.++...++.|..||..
T Consensus       200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence            5678888875  21 110111122233334556789999999877776667889999874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=82.41  E-value=10  Score=26.47  Aligned_cols=61  Identities=15%  Similarity=0.117  Sum_probs=36.2

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeec------Cc-cCcEEEEEeCCCCCeEEEeeCC------CcEEEEecCCCC
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLA------GH-RDGITFIDPKGDSRHLISNSKD------QTIKLWDVRKFN   69 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~------~h-~~~v~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~   69 (118)
                      .-.++.|.++|+.+-. ...+...+++      .. ......+...|+| .++++..+      +.+.+.|..++.
T Consensus       102 ~l~s~~I~viD~~t~p-~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~  175 (462)
T 2ece_A          102 GLRSSRIYIIDTKPNP-REPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE  175 (462)
T ss_dssp             BTTTCCEEEEECCSCT-TSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred             cCCCCeEEEEECCCCC-CCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence            3446789999986411 1134444442      01 1234567778999 66665544      679999987644

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=82.38  E-value=10  Score=26.41  Aligned_cols=54  Identities=11%  Similarity=-0.105  Sum_probs=33.3

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCc----cCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGH----RDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      .+.++.||.-++...     ..-+.++.-    -+.+..+..+|+|++||..+. ..|.|-.+.
T Consensus        37 ~a~~n~iR~~~i~~~-----~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP   94 (452)
T 3pbp_A           37 FIQDNIIRWYNVLTD-----SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVP   94 (452)
T ss_dssp             EEETTEEEEEETTTC-----SSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECC
T ss_pred             EEECCEEEEEECCCC-----CcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEec
Confidence            455678887777641     122333321    225778999999999987653 356665555

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=81.21  E-value=3  Score=28.98  Aligned_cols=32  Identities=16%  Similarity=0.268  Sum_probs=27.8

Q ss_pred             cCcEEEEEeCC---CCCeEEEeeCCCcEEEEecCC
Q psy1285          36 RDGITFIDPKG---DSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus        36 ~~~v~~~~~~~---~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      ..+|..+.|+|   .+.+|++-..|+.|++||+..
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             CCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            46799999998   466899989999999999986

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.60  E-value=3.5  Score=31.27  Aligned_cols=33  Identities=18%  Similarity=0.044  Sum_probs=26.7

Q ss_pred             cEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285          38 GITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus        38 ~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      .+.++...++..++.+-+.|+++|+|++.+...
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~  269 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC  269 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence            456666777788999999999999999887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (106), Expect = 2e-07
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 12  TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
            C VWD        A   GVLAGH + ++ +    D   + + S D  +K+W+
Sbjct: 293 NCNVWDALK-----ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.9 bits (81), Expect = 4e-04
 Identities = 18/102 (17%), Positives = 26/102 (25%), Gaps = 30/102 (29%)

Query: 12  TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG- 70
           +  +WD R              GH   I  I    +     + S D T +L+D+R     
Sbjct: 207 SAKLWDVRE-----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261

Query: 71  ------------------------AANSKDQTIKLWDVRKFS 88
                                    A   D    +WD  K  
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.7 bits (78), Expect = 0.001
 Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 23/72 (31%)

Query: 35  HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------------A 71
              GIT +      R L++   D    +WD  K +                        A
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328

Query: 72  ANSKDQTIKLWD 83
             S D  +K+W+
Sbjct: 329 TGSWDSFLKIWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (101), Expect = 1e-06
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 11/62 (17%)

Query: 12  TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG------DSRHLISNSKDQTIKLWDV 65
               WD+++       P+ +L GHR+ +  +          +     + S D   ++W  
Sbjct: 331 GVLFWDKKS-----GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

Query: 66  RK 67
           +K
Sbjct: 386 KK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (80), Expect = 6e-04
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 29/81 (35%)

Query: 35  HRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNG------------------ 70
           H+D +  +    +  +++S SKD+ +  WD      +    G                  
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366

Query: 71  -----AANSKDQTIKLWDVRK 86
                A  S D   ++W  +K
Sbjct: 367 EYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (77), Expect = 0.002
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 37/114 (32%)

Query: 12  TCFVWDRRT--LNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN 69
              VWD  T  L E          GH+D +  +    D + ++S S D+++KLW+++  N
Sbjct: 228 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287

Query: 70  G-----------------------------------AANSKDQTIKLWDVRKFS 88
                                                + SKD+ +  WD +  +
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 2e-06
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 28/95 (29%)

Query: 12  TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------V 65
           T  +WD  T        +  L GH + +  +      + ++S + D+T+++WD      +
Sbjct: 228 TIKMWDVST-----GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 282

Query: 66  RKFNG-----------------AANSKDQTIKLWD 83
           +  N                     S DQT+K+W+
Sbjct: 283 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.3 bits (95), Expect = 6e-06
 Identities = 18/92 (19%), Positives = 36/92 (39%)

Query: 25  TAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLWDV 84
                  L+GHR  +T +        ++S S+D TIK+WD    +     K  T  + D+
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

Query: 85  RKFSNKTAQRNTFRAVCEQNWEYRRENVPRQL 116
               +     +    +  + W+++     R +
Sbjct: 66  SFDHSGKLLASCSADMTIKLWDFQGFECIRTM 97

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 7e-06
 Identities = 7/41 (17%), Positives = 16/41 (39%)

Query: 27 KPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
          + V +    +D I+ I        L+  S D ++ ++    
Sbjct: 2  QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI 42

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 8e-06
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 6/57 (10%)

Query: 12  TCFVWDRRTLNE----TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
              VWD     +         +  L  H   +  +    D   ++S+S D TI +WD
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 6e-04
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 27 KPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN 69
          + +   +    G+  +    D + ++S  +D TIK+WD     
Sbjct: 6  QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE 46

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-05
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 16  WDRRTLNETTAKPVGVLAGHRDGI-TFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANS 74
           W R  L     K   VL GH D + T +        ++S S D T+K+W           
Sbjct: 1   WRRGEL-----KSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTL 53

Query: 75  KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY 107
              T  +W  +   N     +T R +   N E 
Sbjct: 54  VGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 86

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 3e-05
 Identities = 11/37 (29%), Positives = 15/37 (40%)

Query: 31 VLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
          V  GH   IT +    D + L S   +  I  WD+  
Sbjct: 7  VRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 43

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.1 bits (81), Expect = 4e-04
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 12  TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV 65
           +  VW+    ++    P+ +   H           +   ++S  +D  IK W+V
Sbjct: 247 SVIVWNMNKPSD---HPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-05
 Identities = 6/54 (11%), Positives = 17/54 (31%), Gaps = 6/54 (11%)

Query: 12  TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV 65
               W                +     +   D   D +++++ S D+   +++V
Sbjct: 288 LLNAWRTPYGASI------FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.001
 Identities = 8/72 (11%), Positives = 18/72 (25%), Gaps = 22/72 (30%)

Query: 35  HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF-------------------NG---AA 72
           H   +  +      +  +S  KD  +  W                        +      
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT 323

Query: 73  NSKDQTIKLWDV 84
            S D+   +++V
Sbjct: 324 GSGDKKATVYEV 335

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 9e-05
 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
             ++++          V  L  H   +T +D   DS  +++   D+   +W 
Sbjct: 30 EVHIYEKSG---NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.4 bits (77), Expect = 0.002
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 16  WDRRTLNETTAKP-VGVLAGHRDGITFI----DPKGDSRHLISNSKDQTIKLWDVR 66
            D++  +E +A    G+ + H++ ++ I      K       +   D  + +WDVR
Sbjct: 304 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 2e-04
 Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN 69
                H   I  +     +   +S S D  +K+WD +  +
Sbjct: 7  ANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLD 45

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.7 bits (80), Expect = 6e-04
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 27 KPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
          + +  ++GH  GIT +        LIS S D  I  W    
Sbjct: 4  EVLKTISGHNKGITALT----VNPLISGSYDGRIMEWSSSS 40

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 33.7 bits (75), Expect = 0.003
 Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 9/56 (16%)

Query: 12  TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
               +D +T           +   ++ +T +    D + ++    D  I  + + K
Sbjct: 299 VLLKYDVKT---------RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.77
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.77
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.72
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.69
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.67
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.67
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.66
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.65
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.64
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.63
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.63
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.62
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.62
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.61
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.58
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.58
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.57
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.57
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.56
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.56
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.55
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.52
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.47
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.46
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.46
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.44
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.43
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.43
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.41
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.37
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.26
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.06
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.02
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.99
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.8
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.76
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.64
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.44
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.39
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.23
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.17
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.16
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.02
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.85
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.81
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.72
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.7
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.62
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.52
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	94.06
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	93.76
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	92.87
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	91.76
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	91.15
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	90.37
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	89.34
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	89.27
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	88.94
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	88.91
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	84.81
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	80.07

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.2e-18  Score=115.27  Aligned_cols=105  Identities=11%  Similarity=0.082  Sum_probs=78.5

Q ss_pred             ccccCceEEEEeCCCCCCC-CCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCc---EEEEecCCCCc-----------
Q psy1285           6 QVASLVTCFVWDRRTLNET-TAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQT---IKLWDVRKFNG-----------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~---i~~wd~~~~~~-----------   70 (118)
                      +++.|++|+|||+...... ..+....+.+|...|.+++|+|++++|++|+.|++   |++||+.+...           
T Consensus       200 sgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~  279 (393)
T d1sq9a_         200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS  279 (393)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC----
T ss_pred             EEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccc
Confidence            6788999999999862110 01122345679999999999999999999999875   89999875321           


Q ss_pred             -------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeecc
Q psy1285          71 -------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRE  110 (118)
Q Consensus        71 -------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  110 (118)
                                               ++|+.|++|++||+++++++..+.+|.+.|....+.+.+.
T Consensus       280 ~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~  344 (393)
T d1sq9a_         280 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD  344 (393)
T ss_dssp             ----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred             cceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEEC
Confidence                                     8899999999999999999888888877665433333333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=3.9e-18  Score=109.13  Aligned_cols=98  Identities=20%  Similarity=0.204  Sum_probs=88.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|+.|++||++.     ..+...+.+|.+.|.+++|+|++.+|++++.|+.|++||++....               
T Consensus       201 ~~~~d~~v~i~d~~~-----~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         201 SGACDASAKLWDVRE-----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             EEETTTEEEEEETTT-----TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             EeecCceEEEEECCC-----CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence            567799999999987     788888999999999999999999999999999999999986432               


Q ss_pred             ----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                ++|+.|+.|++||+.+++....+.+|...|..+.|++.
T Consensus       276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d  323 (340)
T d1tbga_         276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCC
Confidence                      77889999999999999999999999999999999764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=6.4e-17  Score=103.40  Aligned_cols=98  Identities=13%  Similarity=0.179  Sum_probs=87.7

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|+|||+..     ...+..+..|...|.+++|+|++.++++++.|+.+.+|+......               
T Consensus        72 sgs~Dg~v~iWd~~~-----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  146 (340)
T d1tbga_          72 SASQDGKLIIWDSYT-----TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL  146 (340)
T ss_dssp             EEETTTEEEEEETTT-----TEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCE
T ss_pred             EEECCCceeeeeccc-----ceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccc
Confidence            788999999999987     778888999999999999999999999999999999999765322               


Q ss_pred             -----------------------------------------------------cceecCCcEEEEeCCCCcceeeecccC
Q psy1285          71 -----------------------------------------------------AANSKDQTIKLWDVRKFSNKTAQRNTF   97 (118)
Q Consensus        71 -----------------------------------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~   97 (118)
                                                                           ++|+.|+.|++||++++.....+..|.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~  226 (340)
T d1tbga_         147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE  226 (340)
T ss_dssp             EEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCS
T ss_pred             cccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCC
Confidence                                                                 678889999999999999988888899


Q ss_pred             cceeeEeeeee
Q psy1285          98 RAVCEQNWEYR  108 (118)
Q Consensus        98 ~~v~~~~~~~~  108 (118)
                      ..|..+.|++.
T Consensus       227 ~~i~~v~~~p~  237 (340)
T d1tbga_         227 SDINAICFFPN  237 (340)
T ss_dssp             SCEEEEEECTT
T ss_pred             CCeEEEEECCC
Confidence            99999998754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5e-16  Score=100.57  Aligned_cols=101  Identities=14%  Similarity=0.137  Sum_probs=80.9

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------   70 (118)
                      +.||.|+|||+...............+|.+.|.+++|+|++++|++++.|++|++||+.....                 
T Consensus        69 g~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  148 (337)
T d1gxra_          69 GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA  148 (337)
T ss_dssp             ECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE
T ss_pred             EECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccc
Confidence            348999999998643222223334457999999999999999999999999999999875432                 


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                              ++++.|+.|++|++++.+.......|...+..+.|+..
T Consensus       149 ~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  194 (337)
T d1gxra_         149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc
Confidence                    67888999999999999888877788888888888654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.67  E-value=7.2e-16  Score=99.41  Aligned_cols=94  Identities=10%  Similarity=0.133  Sum_probs=69.1

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-----------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------   70 (118)
                      +.++.+.+||+..     ......+.+|.+.|.+++|+|++++|++|+.|++|++||+.....                 
T Consensus        35 ~~~~~v~i~~~~~-----~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  109 (311)
T d1nr0a1          35 CNGTSVYTVPVGS-----LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDIS  109 (311)
T ss_dssp             EETTEEEEEETTC-----SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEE
T ss_pred             EeCCEEEEEECCC-----CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccc
Confidence            3456799999986     677777889999999999999999999999999999999976532                 


Q ss_pred             --------ccee--cCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 --------AANS--KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 --------~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                              ++++  .+..+++|++.+.+....+..|...|..+.|+
T Consensus       110 ~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~  155 (311)
T d1nr0a1         110 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK  155 (311)
T ss_dssp             ECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc
Confidence                    2222  23445666666555555555555555555554

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-15  Score=95.41  Aligned_cols=57  Identities=28%  Similarity=0.488  Sum_probs=51.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      +++.||+|+|||+..     .+++.++.+|.+.|.+++|  ++++|++++.|+.|++|++....
T Consensus        30 sgs~Dg~i~vWd~~~-----~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          30 SGLRDNTIKIWDKNT-----LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             EEESSSCEEEEESSS-----CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             EEeCCCeEEEEECCC-----CcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc
Confidence            788999999999987     7888999999999999987  47799999999999999997643

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.66  E-value=8.9e-16  Score=98.97  Aligned_cols=96  Identities=19%  Similarity=0.188  Sum_probs=79.9

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|+.|++||++.     .+....+.+|...|.++.|+|+++++++++.|+.+++||.+....               
T Consensus       164 sgs~d~~i~i~d~~~-----~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~  238 (311)
T d1nr0a1         164 SGSDDNTVAIFEGPP-----FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS  238 (311)
T ss_dssp             EEETTSCEEEEETTT-----BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred             ccccccccccccccc-----cccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccc
Confidence            467899999999987     677788889999999999999999999999999999999875321               


Q ss_pred             ---------------cceecCCcEEEEeCCCCcceeeecccC---cceeeEeee
Q psy1285          71 ---------------AANSKDQTIKLWDVRKFSNKTAQRNTF---RAVCEQNWE  106 (118)
Q Consensus        71 ---------------~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~  106 (118)
                                     ++|+.|++|+|||+++++....+..+.   ..+..+.|+
T Consensus       239 ~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~  292 (311)
T d1nr0a1         239 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT  292 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred             ccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec
Confidence                           788899999999999999887776443   234455554

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.2e-15  Score=97.58  Aligned_cols=78  Identities=28%  Similarity=0.407  Sum_probs=64.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|+|||+..     .+++.++.+|.+.|.+++|+|+ ..|++++.|++|++|+......               
T Consensus        28 tgs~Dg~i~vWd~~~-----~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~  101 (355)
T d1nexb2          28 TGADDKMIRVYDSIN-----KKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD  101 (355)
T ss_dssp             EEETTTEEEEEETTT-----TEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEeCCCeEEEEECCC-----CcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccc
Confidence            788999999999987     7888999999999999999985 5899999999999999886443               


Q ss_pred             ----------cceecCCcEEEEeCCCCcc
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSN   89 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~   89 (118)
                                ++++.|+.|++||++....
T Consensus       102 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~  130 (355)
T d1nexb2         102 IVEYKNIKYIVTGSRDNTLHVWKLPKESS  130 (355)
T ss_dssp             EEEETTEEEEEEEETTSEEEEEECCC---
T ss_pred             cccccccceeeeecCCCcEEEEEccCCce
Confidence                      5567777777777765543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.6e-15  Score=96.94  Aligned_cols=96  Identities=16%  Similarity=0.308  Sum_probs=81.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++.|+.|++||.+.     ...+..+.+|...|.++.++  +++|++++.|+.|++||+++...               
T Consensus       218 ~~~~d~~i~i~d~~~-----~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  290 (355)
T d1nexb2         218 SASMDTTIRIWDLEN-----GELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF  290 (355)
T ss_dssp             EEETTSCEEEEETTT-----CCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEE
T ss_pred             cccccceEEeeeccc-----cccccccccccccccccccc--cceeeeeecccccccccccccceecccccCCceEEEEE
Confidence            567899999999987     77888899999999999997  46899999999999999987543               


Q ss_pred             ------cceecCCcEEEEeCCCCcceee-ecccCcceeeEeeeee
Q psy1285          71 ------AANSKDQTIKLWDVRKFSNKTA-QRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~  108 (118)
                            ++++.|++|++||+++++.+.. +..|...|..+.|+.+
T Consensus       291 ~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~  335 (355)
T d1nexb2         291 YVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK  335 (355)
T ss_dssp             EECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT
T ss_pred             cCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC
Confidence                  5556799999999999988754 4578888999988754

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=4.6e-15  Score=93.29  Aligned_cols=58  Identities=28%  Similarity=0.471  Sum_probs=52.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      +++.|+.+++||++.     ......+.+|...+.+++|++++.++++++.|+.|++|+..+.
T Consensus       118 ~~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~  175 (317)
T d1vyhc1         118 SASRDKTIKMWEVQT-----GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK  175 (317)
T ss_dssp             EEETTSEEEEEETTT-----CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             eeccCcceeEeeccc-----ceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc
Confidence            677899999999987     6778888899999999999999999999999999999998753

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=4.3e-15  Score=96.85  Aligned_cols=102  Identities=21%  Similarity=0.267  Sum_probs=78.3

Q ss_pred             ccccCceEEEEeCCCCCCCC--CCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc-------------
Q psy1285           6 QVASLVTCFVWDRRTLNETT--AKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------------   70 (118)
                      +++.|+.|++||........  ........+|.+.|.+++|+|++++|++++.|+.|++||+++...             
T Consensus       222 ~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  301 (388)
T d1erja_         222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE  301 (388)
T ss_dssp             EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEE
T ss_pred             EEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccccee
Confidence            56789999999998621100  011122346889999999999999999999999999999875321             


Q ss_pred             ----------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 ----------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ----------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                                            ++|+.|+.|++||+++++....+.+|.+.|..+.|..
T Consensus       302 ~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~  360 (388)
T d1erja_         302 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN  360 (388)
T ss_dssp             EEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred             eecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEec
Confidence                                  7788999999999999999999999999999888753

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4e-15  Score=94.59  Aligned_cols=55  Identities=29%  Similarity=0.450  Sum_probs=50.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      +++.||+|+|||+.+     .+++.++.+|.+.|.+++|+++  +|++++.|+.+++|+...
T Consensus        32 sgs~Dg~i~vWd~~~-----~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~   86 (342)
T d2ovrb2          32 SGSDDNTLKVWSAVT-----GKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAET   86 (342)
T ss_dssp             EEETTSCEEEEETTT-----CCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTT
T ss_pred             EEeCCCeEEEEECCC-----CCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccccc
Confidence            789999999999987     7888999999999999999864  899999999999999775

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.6e-15  Score=94.82  Aligned_cols=96  Identities=24%  Similarity=0.326  Sum_probs=79.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|++||++.     ..++..+.+|...+.++.++  ++++++++.|+.|++||......               
T Consensus       192 s~~~dg~i~~~d~~~-----~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  264 (342)
T d2ovrb2         192 SGSLDTSIRVWDVET-----GNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT  264 (342)
T ss_dssp             EEETTSCEEEEETTT-----CCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEE
T ss_pred             EEeCCCeEEEeeccc-----ceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeecee
Confidence            678899999999987     67788888999999988876  46999999999999999876543               


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeec-----ccCcceeeEeeeee
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQR-----NTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~  108 (118)
                               ++|+.|++|++||+++++.+..+.     .|...|..+.|++.
T Consensus       265 ~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             EEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             ecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence                     788999999999999998877653     35556777777654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=9.2e-16  Score=100.60  Aligned_cols=100  Identities=14%  Similarity=0.184  Sum_probs=80.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|+.|+|||....   .......+++|.+.|.+++|+|++++|++++.|++|++||+.+...               
T Consensus        24 ~~~~~~~i~iw~~~~~---~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~  100 (371)
T d1k8kc_          24 ICPNNHEVHIYEKSGN---KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC  100 (371)
T ss_dssp             EECSSSEEEEEEEETT---EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEE
T ss_pred             EEeCCCEEEEEECCCC---CEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccc
Confidence            6778999999999751   1346677889999999999999999999999999999999865321               


Q ss_pred             ----------cceecCCcEEEEeCCCCcceee----ecccCcceeeEeeeee
Q psy1285          71 ----------AANSKDQTIKLWDVRKFSNKTA----QRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~  108 (118)
                                ++++.|++|++|++........    ...|...|.++.|++.
T Consensus       101 i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_         101 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             EEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             cccccccccceeecccCcceeeeeeccccccccccccccccccccccccccc
Confidence                      7788999999999877665432    2356777888888753

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.2e-14  Score=91.37  Aligned_cols=98  Identities=30%  Similarity=0.349  Sum_probs=86.4

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|+|||+..     .+.+..+.+|.+.|.+++|+|++..++++..++.+.+|+......               
T Consensus        34 s~s~Dg~i~iWd~~~-----~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (317)
T d1vyhc1          34 SASEDATIKVWDYET-----GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS  108 (317)
T ss_dssp             EEESSSCEEEEETTT-----CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEE
T ss_pred             EEeCCCeEEEEECCC-----CCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeee
Confidence            788999999999987     678888999999999999999999999999999999999875432               


Q ss_pred             --------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                              ++++.|+.+++||++++.....+..|...+..+.|++.
T Consensus       109 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (317)
T d1vyhc1         109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD  154 (317)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             ccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccC
Confidence                    67888999999999999988888888888888877653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.58  E-value=5.5e-15  Score=93.64  Aligned_cols=78  Identities=17%  Similarity=0.279  Sum_probs=64.0

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|+.|++||+.....  ......+.+|...|.+++|+|++.+|++|+.|+.|++||+++...               
T Consensus       196 ~~~~d~~i~~~~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  273 (299)
T d1nr0a2         196 ATDQSRKVIPYSVANNFE--LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN  273 (299)
T ss_dssp             EEETTSCEEEEEGGGTTE--ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred             cccccccccccccccccc--ccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEE
Confidence            567899999999976211  223345677999999999999999999999999999999986532               


Q ss_pred             ----------cceecCCcEEEEeCC
Q psy1285          71 ----------AANSKDQTIKLWDVR   85 (118)
Q Consensus        71 ----------~s~~~d~~i~iwd~~   85 (118)
                                ++++.|++|++||+.
T Consensus       274 ~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         274 SVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEECC
T ss_pred             EEEECCCCEEEEEeCCCEEEEEecc
Confidence                      778899999999973

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1e-14  Score=92.38  Aligned_cols=62  Identities=5%  Similarity=-0.148  Sum_probs=47.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC-CCeEEEeeCCCcEEEEecCCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD-SRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      +++.||+|||||+....  .........+|.+.|.+++|+|+ +.++++|+.|+.|++|+.....
T Consensus        28 s~s~Dg~v~iwd~~~~~--~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~   90 (342)
T d1yfqa_          28 ITSWDGSLTVYKFDIQA--KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             EEETTSEEEEEEEETTT--TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred             EEECCCeEEEEEccCCC--cceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccc
Confidence            78899999999997521  01122333469999999999985 5688999999999999997643

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=2.5e-14  Score=90.14  Aligned_cols=96  Identities=18%  Similarity=0.121  Sum_probs=75.8

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeee-cCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc----------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVL-AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----------------   70 (118)
                      ..++.+++|++..     ......+ ..|.+.+.+++|+|++.+|++++.|+.|++||+.+...                
T Consensus       138 ~~~~~v~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~  212 (287)
T d1pgua2         138 EEGNTIQVFKLSD-----LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAIS  212 (287)
T ss_dssp             TTTSCEEEEETTE-----EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEE
T ss_pred             cccceeeeeeccc-----cceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceee
Confidence            3346899999875     3333333 35778899999999999999999999999999875421                


Q ss_pred             ------------------cceecCCcEEEEeCCCCcc-eeeecccCcceeeEeeeee
Q psy1285          71 ------------------AANSKDQTIKLWDVRKFSN-KTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 ------------------~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~  108 (118)
                                        ++|+.|++|++||++.+.. ...+.+|...|+.+.|+..
T Consensus       213 ~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~  269 (287)
T d1pgua2         213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP  269 (287)
T ss_dssp             ECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred             ecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCC
Confidence                              6789999999999987554 4445589999999999864

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.1e-14  Score=91.42  Aligned_cols=96  Identities=13%  Similarity=0.108  Sum_probs=81.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      .++.|+.+++||++.     .+.+..+. |.+.|.+++|+|++..+++++.|+.+++||++....               
T Consensus       200 ~~~~d~~v~i~d~~~-----~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~  273 (337)
T d1gxra_         200 TGGLDNTVRSWDLRE-----GRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF  273 (337)
T ss_dssp             EEETTSEEEEEETTT-----TEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEE
T ss_pred             ccccccccccccccc-----ceeecccc-cccceEEEEEcccccccceeccccccccccccccccccccccccccceEEE
Confidence            567799999999987     56655554 889999999999999999999999999999986543               


Q ss_pred             -------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 -------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                             ++++.|+.|++||+.+++...... |...|..+.|++.
T Consensus       274 s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d  317 (337)
T d1gxra_         274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVD  317 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTT
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCC
Confidence                   788999999999999998876654 6678888888753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1.6e-14  Score=93.25  Aligned_cols=91  Identities=14%  Similarity=0.116  Sum_probs=71.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCC-CCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGD-SRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.|+.+++||......  ........+|...|.+++|+|+ +.++++++.|+.|++||+++...              
T Consensus       177 ~~~~d~~v~~~d~~~~~~--~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~  254 (325)
T d1pgua1         177 TVGDDGSVVFYQGPPFKF--SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG  254 (325)
T ss_dssp             EEETTTEEEEEETTTBEE--EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred             Eeeccccccccccccccc--ceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccc
Confidence            677899999999875210  1122234567888999999996 68899999999999999986543              


Q ss_pred             ------------cceecCCcEEEEeCCCCcceeeecccCc
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSNKTAQRNTFR   98 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~   98 (118)
                                  ++++.|++|+|||+++++.+..+..+..
T Consensus       255 ~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             EEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             eeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC
Confidence                        6788999999999999998877764444

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.55  E-value=5.6e-14  Score=91.98  Aligned_cols=102  Identities=14%  Similarity=-0.050  Sum_probs=82.2

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.|+++++|++..... ..........|...|.+++|+|++++|++++.|+++++||......               
T Consensus       112 ~~s~d~~i~i~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~  190 (371)
T d1k8kc_         112 VGSGSRVISICYFEQEND-WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF  190 (371)
T ss_dssp             EEETTSSEEEEEEETTTT-EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred             eecccCcceeeeeecccc-cccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccc
Confidence            567899999999876211 0112334557899999999999999999999999999999764221               


Q ss_pred             --------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                                ++++.|+.|++||+..+.....+..|..+|..+.|++.
T Consensus       191 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d  254 (371)
T d1k8kc_         191 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE  254 (371)
T ss_dssp             TCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEET
T ss_pred             eeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCC
Confidence                                      67888999999999999988888888889999999754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=4.9e-14  Score=91.76  Aligned_cols=101  Identities=11%  Similarity=0.155  Sum_probs=78.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ....++.+.+|+....... ...+....+|.+.|.|++|+|+|++|++|+ |++|++||+.+...               
T Consensus        33 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~  110 (388)
T d1erja_          33 KKQTNDYYILYNPALPREI-DVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE  110 (388)
T ss_dssp             EEECSSCEEEECTTSCCCE-EEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred             ccCCCCcEEEeCCCCCcce-eeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccc
Confidence            4556788899998653211 112223336999999999999999999986 89999999875321               


Q ss_pred             --------------------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeee
Q psy1285          71 --------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        71 --------------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                                                ++|+.|+.|++||....+.......|...|..+.|+..
T Consensus       111 ~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (388)
T d1erja_         111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS  174 (388)
T ss_dssp             --------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             ccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccc
Confidence                                      67899999999999999988888888888888888653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=4.3e-13  Score=86.45  Aligned_cols=99  Identities=11%  Similarity=0.077  Sum_probs=82.3

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCe-EEEeeCCCcEEEEecCCCCc----------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRH-LISNSKDQTIKLWDVRKFNG----------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~----------------   70 (118)
                      +.++.+++|+...     ...+..+.+|...|.+++|+|++.+ +++++.|+.+++||.+....                
T Consensus       136 ~~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~  210 (325)
T d1pgua1         136 GRDNFGVFISWDS-----GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD  210 (325)
T ss_dssp             CSSCSEEEEETTT-----CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred             cccceEEEEeecc-----cccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEE
Confidence            3467889999876     6778888999999999999998765 67899999999999875322                


Q ss_pred             -----------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeeeeccc
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRREN  111 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  111 (118)
                                 ++++.|+.|++||+++++....+..|...+....|++..++
T Consensus       211 v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~d  262 (325)
T d1pgua1         211 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD  262 (325)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESS
T ss_pred             eeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccC
Confidence                       67889999999999999998888888888888888766543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.46  E-value=5e-13  Score=84.42  Aligned_cols=96  Identities=16%  Similarity=0.178  Sum_probs=72.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCce-eeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPV-GVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +++.|+.+++||++.     .... .....|...|.+++|+|++.++++++.|+.|++||+.+...              
T Consensus       153 ~g~~dg~i~~~d~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v  227 (299)
T d1nr0a2         153 VGGQDSKVHVYKLSG-----ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV  227 (299)
T ss_dssp             EEETTSEEEEEEEET-----TEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred             ccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            567899999999975     3322 23346899999999999999999999999999999864321              


Q ss_pred             ------------cceecCCcEEEEeCCCCcceeeec---ccCcceeeEeee
Q psy1285          71 ------------AANSKDQTIKLWDVRKFSNKTAQR---NTFRAVCEQNWE  106 (118)
Q Consensus        71 ------------~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~  106 (118)
                                  ++|+.|+.|++||++++.......   .+...+..+.|.
T Consensus       228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  278 (299)
T d1nr0a2         228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL  278 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE
T ss_pred             ccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC
Confidence                        788999999999999876543222   334456666553

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.46  E-value=4.8e-13  Score=89.09  Aligned_cols=85  Identities=14%  Similarity=0.101  Sum_probs=70.5

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      +++.||+|+|||+.+     .+.+.++..|. .+..++|+|||+++++++.|+++++||+.+...               
T Consensus        37 ~~~~dg~v~vwD~~t-----~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          37 TLRDAGQIALVDGDS-----KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             EETTTTEEEEEETTT-----CSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             EEcCCCEEEEEECCC-----CcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence            677899999999987     78888888664 589999999999999999999999999976542               


Q ss_pred             --------------cceecCCcEEEEeCCCCcceeeeccc
Q psy1285          71 --------------AANSKDQTIKLWDVRKFSNKTAQRNT   96 (118)
Q Consensus        71 --------------~s~~~d~~i~iwd~~~~~~~~~~~~~   96 (118)
                                    +++..++.+++||............+
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~  150 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR  150 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeecc
Confidence                          34457899999999998876655433

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.44  E-value=5.2e-13  Score=89.56  Aligned_cols=84  Identities=14%  Similarity=0.057  Sum_probs=71.3

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      .+++.||+|.|||..+     .+.+..+..+ ..+..++|+|||+++++++.|+++.+||+.+...              
T Consensus        36 v~~~d~g~v~v~D~~t-----~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          36 VTLRDAGQIALIDGST-----YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             EEETTTTEEEEEETTT-----CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             EEEcCCCEEEEEECCC-----CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            4788999999999987     7888888765 4689999999999999999999999999876432              


Q ss_pred             ---------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 ---------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 ---------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                                     ++++.+++|++||..+++....+.
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~  148 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS  148 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeec
Confidence                           556778999999999988776544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.8e-13  Score=82.75  Aligned_cols=95  Identities=26%  Similarity=0.403  Sum_probs=77.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------   70 (118)
                      ..+.|+.+++||++.     .+.+..+.++...+..+.++  +..+++++.|++|++||+++...               
T Consensus       153 ~~s~d~~i~~~d~~~-----~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~  225 (293)
T d1p22a2         153 SASGDRTIKVWNTST-----CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR  225 (293)
T ss_dssp             EEETTSEEEEEETTT-----CCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             cccCCCceeeecCCC-----CcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeecc
Confidence            567899999999987     67788888898888888776  56899999999999999987543               


Q ss_pred             ------cceecCCcEEEEeCCCC---------cceeeecccCcceeeEeeee
Q psy1285          71 ------AANSKDQTIKLWDVRKF---------SNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 ------~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~  107 (118)
                            ++|+.|+.|++||++..         .....+.+|...|..+.|+.
T Consensus       226 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~  277 (293)
T d1p22a2         226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE  277 (293)
T ss_dssp             CCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS
T ss_pred             ccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC
Confidence                  78899999999997542         23345668888899888864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=3.9e-13  Score=84.55  Aligned_cols=74  Identities=19%  Similarity=0.229  Sum_probs=60.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCc-eeeecCccCcEEEEEeCCC----------CCeEEEeeCCCcEEEEecCCCCc----
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKP-VGVLAGHRDGITFIDPKGD----------SRHLISNSKDQTIKLWDVRKFNG----   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~----------~~~l~s~~~d~~i~~wd~~~~~~----   70 (118)
                      +++.||.|++||+..     ... ...+.+|...|.+++|+|.          +.++++|+.|++|++||+++...    
T Consensus       179 ~g~~dg~i~i~d~~~-----~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~  253 (287)
T d1pgua2         179 AGDVMGKILLYDLQS-----REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA  253 (287)
T ss_dssp             EEETTSCEEEEETTT-----TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred             cccccccccceeecc-----cccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEE
Confidence            567899999999986     333 3346689999999999864          46899999999999999876332    


Q ss_pred             -------------------cceecCCcEEEEeC
Q psy1285          71 -------------------AANSKDQTIKLWDV   84 (118)
Q Consensus        71 -------------------~s~~~d~~i~iwd~   84 (118)
                                         ++++.|++|++|++
T Consensus       254 ~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         254 LNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             eCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence                               78889999999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=4.3e-13  Score=88.30  Aligned_cols=65  Identities=11%  Similarity=0.116  Sum_probs=47.4

Q ss_pred             ccccCc---eEEEEeCCCCCC--------CCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285           6 QVASLV---TCFVWDRRTLNE--------TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         6 ~~~~dg---~v~iwd~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      +++.|+   .+++||+..+..        ........+.+|.+.|.+++|+|++++|++++.|++|++||+.+...
T Consensus       248 sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER  323 (393)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence            455564   599999986210        11122223458999999999999999999999999999999987543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1.2e-12  Score=82.67  Aligned_cols=67  Identities=15%  Similarity=0.036  Sum_probs=56.5

Q ss_pred             ceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc---------------------------cceecCCcEE
Q psy1285          28 PVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---------------------------AANSKDQTIK   80 (118)
Q Consensus        28 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------------------~s~~~d~~i~   80 (118)
                      .+...++|.+.|.+++|+|++++|++++.|++|++||+.....                           ++|+.|+.|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            4455678999999999999999999999999999999865322                           7788999999


Q ss_pred             EEeCCCCcceeeec
Q psy1285          81 LWDVRKFSNKTAQR   94 (118)
Q Consensus        81 iwd~~~~~~~~~~~   94 (118)
                      +|++..........
T Consensus        83 ~w~~~~~~~~~~~~   96 (342)
T d1yfqa_          83 KVDLIGSPSFQALT   96 (342)
T ss_dssp             EECSSSSSSEEECB
T ss_pred             eeeccccccccccc
Confidence            99998877765544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.26  E-value=3.4e-11  Score=77.07  Aligned_cols=93  Identities=12%  Similarity=0.115  Sum_probs=73.6

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCC--cEEEEecCCCCc---------------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQ--TIKLWDVRKFNG---------------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~---------------   70 (118)
                      +.+|.|++||+..     ....+ + +|...|.+++|+|||+.|++++.+.  .+++||..+...               
T Consensus        21 ~~~g~v~v~d~~~-----~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~   93 (360)
T d1k32a3          21 VSRGQAFIQDVSG-----TYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGV   93 (360)
T ss_dssp             EETTEEEEECTTS-----SBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEE
T ss_pred             EECCeEEEEECCC-----CcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeee
Confidence            4578999999975     44433 3 5899999999999999998766553  799999987543               


Q ss_pred             -------cceecCCcEEEEeCCCCcceeeecccCcceeeEeeee
Q psy1285          71 -------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        71 -------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                             ++++.++.+++|+.........+..+...+..+.|++
T Consensus        94 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  137 (360)
T d1k32a3          94 DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD  137 (360)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred             cccccccceeccccccccccccccceeeeeecccccccchhhcc
Confidence                   6788899999999999888777777777777777764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.06  E-value=1.4e-09  Score=67.84  Aligned_cols=85  Identities=12%  Similarity=0.064  Sum_probs=66.6

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeE-EEeeCCCcEEEEecCCCCc--------------
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHL-ISNSKDQTIKLWDVRKFNG--------------   70 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~--------------   70 (118)
                      +.+.|++|.+||+.+     .+.+.++. ....+..++|+|+|++| ++++.++.|.+||+.+...              
T Consensus         7 ~~~~~~~v~v~D~~t-----~~~~~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~   80 (301)
T d1l0qa2           7 ANSESDNISVIDVTS-----NKVTATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA   80 (301)
T ss_dssp             EETTTTEEEEEETTT-----TEEEEEEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred             EECCCCEEEEEECCC-----CeEEEEEE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccc
Confidence            456789999999987     67777776 34567899999999987 5677899999999987543              


Q ss_pred             ---------cceecCCcEEEEeCCCCcceeeeccc
Q psy1285          71 ---------AANSKDQTIKLWDVRKFSNKTAQRNT   96 (118)
Q Consensus        71 ---------~s~~~d~~i~iwd~~~~~~~~~~~~~   96 (118)
                               +++..+..+.+|+..+.+....+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG  115 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             cccccccccccccccceeeecccccceeeeecccc
Confidence                     44556788999999988877666533

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.02  E-value=1.7e-09  Score=68.24  Aligned_cols=85  Identities=13%  Similarity=0.014  Sum_probs=64.8

Q ss_pred             cccccCceEEEEeCCCCCCCCCCceeeecC--ccCcEEEEEeCCCCCeE-EEeeCCCcEEEEecCCCCc-----------
Q psy1285           5 PQVASLVTCFVWDRRTLNETTAKPVGVLAG--HRDGITFIDPKGDSRHL-ISNSKDQTIKLWDVRKFNG-----------   70 (118)
Q Consensus         5 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~-----------   70 (118)
                      .+++.|++|++||+..     .+.+.++..  +...+.+++|+|||+++ ++++.++.|.+||+.+.+.           
T Consensus         5 vt~~~d~~v~v~D~~s-----~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           5 LAPARPDKLVVIDTEK-----MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEETTTEEEEEETTT-----TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             EEEcCCCEEEEEECCC-----CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            4678899999999987     677776653  34567899999999987 5677899999999987543           


Q ss_pred             -----------------------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 -----------------------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 -----------------------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                                                   .....+..+.+||..+......+.
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  132 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE  132 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc
Confidence                                         112245678889998887766554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.00  E-value=5.7e-10  Score=74.54  Aligned_cols=64  Identities=9%  Similarity=-0.095  Sum_probs=46.1

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeE-EEeeCCCcEEEEecCCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHL-ISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~   69 (118)
                      +++.|+++++||+.+........+....+|.+.+.+..|+|||++| ++++.++++++||..+..
T Consensus        78 ~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~  142 (432)
T d1qksa2          78 VIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  142 (432)
T ss_dssp             EEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             EEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc
Confidence            5678999999999863211111222334566777788889999986 678889999999988754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.99  E-value=4.2e-09  Score=67.09  Aligned_cols=89  Identities=10%  Similarity=0.043  Sum_probs=66.2

Q ss_pred             ceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc--------------------
Q psy1285          11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------------   70 (118)
Q Consensus        11 g~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------------   70 (118)
                      ..|++||...      .....+..|.+.+.+++|+|++++|++++.++.+.+|+......                    
T Consensus        66 ~~v~v~d~~~------~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  139 (360)
T d1k32a3          66 DFLGIYDYRT------GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS  139 (360)
T ss_dssp             EEEEEEETTT------CCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS
T ss_pred             CEEEEEECCC------CcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccce
Confidence            3789999985      33445678999999999999999999999999999999987543                    


Q ss_pred             -------------cceecCCcEEEEeCCCCcceeeecccCcceeeEeee
Q psy1285          71 -------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE  106 (118)
Q Consensus        71 -------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  106 (118)
                                   ..+..++.+++||+.+.+..... .+...+..+.|+
T Consensus       140 ~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~s  187 (360)
T d1k32a3         140 RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFD  187 (360)
T ss_dssp             CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEEC
T ss_pred             eeeeeeccccccceeeccccceeeeccccCceeeec-cccccccccccc
Confidence                         13344567899999887654332 333444555554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=1.6e-08  Score=63.87  Aligned_cols=60  Identities=10%  Similarity=0.061  Sum_probs=43.8

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEE-eeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLIS-NSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~   68 (118)
                      ..+.|++|++|++....  ..+.+..+ .|.+.+..++|+|||++|.+ +..|+.|.+|++...
T Consensus         9 ~~~~~~~I~v~~~~~~~--~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~   69 (333)
T d1ri6a_           9 ASPESQQIHVWNLNHEG--ALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD   69 (333)
T ss_dssp             EEGGGTEEEEEEECTTS--CEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ECCCCCcEEEEEEcCCC--CeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC
Confidence            34678999999997520  01222333 58889999999999998854 555899999998754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.80  E-value=1.7e-08  Score=63.80  Aligned_cols=58  Identities=14%  Similarity=-0.052  Sum_probs=48.3

Q ss_pred             ccccCceEEEEeCCCCCCCCCCceeeec-CccCcEEEEEeCCCCCeE-EEeeCCCcEEEEecCCC
Q psy1285           6 QVASLVTCFVWDRRTLNETTAKPVGVLA-GHRDGITFIDPKGDSRHL-ISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         6 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~   68 (118)
                      +++.|++|.+||+.+     .+.+.++. .+...+.+++|+|||+++ +++..++.|.+||+.+.
T Consensus        13 ~~~~~~~v~v~D~~t-----~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~   72 (346)
T d1jmxb_          13 VTNYPNNLHVVDVAS-----DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC   72 (346)
T ss_dssp             EEETTTEEEEEETTT-----TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             EEcCCCEEEEEECCC-----CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC
Confidence            678899999999987     67777776 456667899999999987 56668899999999875

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.76  E-value=1e-08  Score=67.88  Aligned_cols=90  Identities=17%  Similarity=0.236  Sum_probs=66.9

Q ss_pred             cccCceEEEEeCCCCCC--CCCCceeeecCccCcEEEEEeCCCCCeEEE-------eeCCCcEEEEecCCCCc-------
Q psy1285           7 VASLVTCFVWDRRTLNE--TTAKPVGVLAGHRDGITFIDPKGDSRHLIS-------NSKDQTIKLWDVRKFNG-------   70 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-------~~~d~~i~~wd~~~~~~-------   70 (118)
                      .+.|+.+.+|+......  ...+....+.+|...+..++|+|++++|++       ++.|++|++||+.+...       
T Consensus       272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~  351 (426)
T d1hzua2         272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI  351 (426)
T ss_dssp             CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred             cCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEecc
Confidence            45688898888765221  223566788899999999999999999984       55689999999876432       


Q ss_pred             --------------------------cc----eecCCcEEEEeCCCCcceeeeccc
Q psy1285          71 --------------------------AA----NSKDQTIKLWDVRKFSNKTAQRNT   96 (118)
Q Consensus        71 --------------------------~s----~~~d~~i~iwd~~~~~~~~~~~~~   96 (118)
                                                ++    ++.++.|+|||.++.+....+...
T Consensus       352 ~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~  407 (426)
T d1hzua2         352 AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  407 (426)
T ss_dssp             HHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             chhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCC
Confidence                                      11    235677999999999877666543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.64  E-value=4.4e-08  Score=61.60  Aligned_cols=57  Identities=5%  Similarity=0.049  Sum_probs=46.1

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      ++.++.+++||+..     .+.+..+. +...+.+++|+|+|++|++++.|++|.+||..+.+
T Consensus       256 ~~~~~~i~v~d~~~-----~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         256 FGAYNVLESFDLEK-----NASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EEEESEEEEEETTT-----TEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             EEccccEEEEECCC-----CcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            34578999999987     66666665 66778999999999999999888888888877654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.44  E-value=2e-07  Score=58.65  Aligned_cols=55  Identities=7%  Similarity=0.050  Sum_probs=43.8

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCC
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   69 (118)
                      .++.+++||...     .+.+..+. +...+.+++|+|||+++++++.|+.|++||..+.+
T Consensus       270 ~~~~v~v~d~~~-----~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         270 VLNRLAKYDLKQ-----RKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             EESEEEEEETTT-----TEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             cCCeEEEEECCC-----CcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence            346899999987     66666655 45678999999999999999888888888877654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.39  E-value=7.2e-07  Score=55.15  Aligned_cols=55  Identities=16%  Similarity=0.055  Sum_probs=41.2

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeE-EEeeCCCcEEEEecCCCC
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHL-ISNSKDQTIKLWDVRKFN   69 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~   69 (118)
                      .+++|++||..+     .+....+.. ...+.+++|+|+|++| ++++.|++|++||+.+..
T Consensus       222 ~~~~v~v~D~~t-----~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         222 YFNTVSMIDTGT-----NKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             SCCEEEEEETTT-----TEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             eeeeeeeeecCC-----CeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            357899999987     566666653 4568999999999976 566667777777776653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.23  E-value=9.7e-06  Score=51.70  Aligned_cols=54  Identities=13%  Similarity=0.174  Sum_probs=41.3

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEee----------CCCcEEEEecCCCC
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNS----------KDQTIKLWDVRKFN   69 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~   69 (118)
                      ..+.|.+||..+     .+.+.++..+..  ..+.|+|||+++++++          .++.|.+||..+.+
T Consensus        45 ~~~~v~v~D~~t-----g~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~  108 (373)
T d2madh_          45 AIIQQWVLDAGS-----GSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL  108 (373)
T ss_pred             CCceEEEEECCC-----CCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCc
Confidence            346788999876     677777765543  3789999999998764          35789999998754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.17  E-value=5.1e-06  Score=52.55  Aligned_cols=80  Identities=14%  Similarity=0.170  Sum_probs=56.4

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEe----------eCCCcEEEEecCCCCc-------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISN----------SKDQTIKLWDVRKFNG-------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----------~~d~~i~~wd~~~~~~-------   70 (118)
                      +.+.+|.+||..+     .+++.++..+.  ...++|+|||+.|+..          ..|+.|.+||..+...       
T Consensus        25 ~~~~~v~v~D~~t-----g~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~   97 (355)
T d2bbkh_          25 AAVTQQFVIDGEA-----GRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP   97 (355)
T ss_dssp             CSSEEEEEEETTT-----TEEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred             CCcCeEEEEECCC-----CcEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecC
Confidence            3467899999987     67777766443  3479999999988754          3478999999886543       


Q ss_pred             -------------------------cceecCCcEEEEeCCCCcceeeec
Q psy1285          71 -------------------------AANSKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 -------------------------~s~~~d~~i~iwd~~~~~~~~~~~   94 (118)
                                               +..+.+..+.+|+..+......+.
T Consensus        98 ~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d2bbkh_          98 DAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  146 (355)
T ss_dssp             TCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             CcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEe
Confidence                                     112345678888888877665443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.16  E-value=5.6e-06  Score=52.85  Aligned_cols=56  Identities=7%  Similarity=0.004  Sum_probs=38.1

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeE--EEeeCCCcEEEEecCCC
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHL--ISNSKDQTIKLWDVRKF   68 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l--~s~~~d~~i~~wd~~~~   68 (118)
                      ...++.+.+||...     .+.+..+. +...+..++|+|||+.+  ++++.|++|++||+.+.
T Consensus       294 ~~~~~~v~~~d~~t-----~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg  351 (373)
T d2madh_         294 HAAAKEVTSVTGLV-----GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             ecCCCeEEEEECCC-----CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            34567889999987     66666665 66778999999999853  45555555555544443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.02  E-value=8.6e-06  Score=51.46  Aligned_cols=53  Identities=17%  Similarity=0.176  Sum_probs=35.5

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCe--EEEeeCCCcEEEEecCCC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRH--LISNSKDQTIKLWDVRKF   68 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~~~d~~i~~wd~~~~   68 (118)
                      ...|.+||...     .+.+..+. +...+.+++|+|||+.  +++++.|++|.+||.++.
T Consensus       279 ~~~v~v~d~~t-----~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         279 SRFVVVLDAKT-----GERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             EEEEEEEETTT-----CCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             CCeEEEEeCCC-----CcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence            35789999987     56666665 4556889999999974  344544555555555443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.85  E-value=2.5e-05  Score=50.10  Aligned_cols=77  Identities=13%  Similarity=-0.011  Sum_probs=55.2

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCcc-------CcEEEEEeCCCCCeEEEee-CCCcEEEEecCCCCc---------
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHR-------DGITFIDPKGDSRHLISNS-KDQTIKLWDVRKFNG---------   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~---------   70 (118)
                      +.|++|++||..+     .++...+..+.       .....++|+|||++++.+. .++.+.+||+.+...         
T Consensus        93 ~~d~~v~v~D~~t-----~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~  167 (368)
T d1mdah_          93 KRTDYVEVFDPVT-----FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC  167 (368)
T ss_dssp             SEEEEEEEECTTT-----CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC
T ss_pred             ccCCeEEEEECCC-----CcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc
Confidence            4578899999987     56555544322       1234689999999988775 578999999887543         


Q ss_pred             -----------cceecCCcEEEEeCCCCcc
Q psy1285          71 -----------AANSKDQTIKLWDVRKFSN   89 (118)
Q Consensus        71 -----------~s~~~d~~i~iwd~~~~~~   89 (118)
                                 +..+.|+++.+++......
T Consensus       168 ~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~  197 (368)
T d1mdah_         168 FHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             ceEccCCCceEEEEcCCCCEEEEEecCCce
Confidence                       4556788988888765543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.81  E-value=1.4e-05  Score=52.86  Aligned_cols=78  Identities=9%  Similarity=0.053  Sum_probs=56.0

Q ss_pred             cCceEEEEeCCCCCCCCCCcee-----eecCccCcEEEEEeCCCCCeEEEeeC---------CCcEEEEecCCCCc----
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVG-----VLAGHRDGITFIDPKGDSRHLISNSK---------DQTIKLWDVRKFNG----   70 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~----   70 (118)
                      .|+.+.+||+..     .+...     .+..|...|.++.||||++.|+.++.         ++.+.+||+.+...    
T Consensus        34 ~~~~~~~~~~~t-----~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~  108 (470)
T d2bgra1          34 QENNILVFNAEY-----GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE  108 (470)
T ss_dssp             SSSCEEEEETTT-----CCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred             cCCcEEEEECCC-----CCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccc
Confidence            467899999987     33322     34456678999999999999987753         46788999986532    


Q ss_pred             -----------------cceecCCcEEEEeCCCCccee
Q psy1285          71 -----------------AANSKDQTIKLWDVRKFSNKT   91 (118)
Q Consensus        71 -----------------~s~~~d~~i~iwd~~~~~~~~   91 (118)
                                       +.-..++.+.+|+...+....
T Consensus       109 ~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~  146 (470)
T d2bgra1         109 RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR  146 (470)
T ss_dssp             CCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE
T ss_pred             cCCccccccccccCcceeeEeecccceEEECCCCceee
Confidence                             233457788888888776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.72  E-value=9.5e-05  Score=47.27  Aligned_cols=78  Identities=10%  Similarity=0.001  Sum_probs=54.1

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEee----------CCCcEEEEecCCCCc---------
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNS----------KDQTIKLWDVRKFNG---------   70 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~---------   70 (118)
                      +..+.++|...     .+.+..+..+...  .+.|+|||+.++..+          .|+.|.+||..+...         
T Consensus        45 ~~~~~~~d~~~-----~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~  117 (368)
T d1mdah_          45 TTENWVSCAGC-----GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             SEEEEEEETTT-----TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred             cceEEEEeCCC-----CcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc
Confidence            34566667765     6776666655443  588999999887643          477899999876432         


Q ss_pred             ---------------------cce-ecCCcEEEEeCCCCcceeeec
Q psy1285          71 ---------------------AAN-SKDQTIKLWDVRKFSNKTAQR   94 (118)
Q Consensus        71 ---------------------~s~-~~d~~i~iwd~~~~~~~~~~~   94 (118)
                                           +.+ ..++.+.+||+.+.+....+.
T Consensus       118 ~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~  163 (368)
T d1mdah_         118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK  163 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE
T ss_pred             ceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee
Confidence                                 223 357899999999887766554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=0.0001  Score=45.74  Aligned_cols=58  Identities=7%  Similarity=0.080  Sum_probs=39.0

Q ss_pred             cccCceEEEEeCCCCCCCCCCc-eeeecCccCcEEEEEeCCCCCeEEEeeC-CCcEEEEecCC
Q psy1285           7 VASLVTCFVWDRRTLNETTAKP-VGVLAGHRDGITFIDPKGDSRHLISNSK-DQTIKLWDVRK   67 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~~wd~~~   67 (118)
                      ...|+.|++|++....   ... ......+...+..++|+|+|++|++++. ++.+.+|+...
T Consensus        55 ~~~d~~i~~~~i~~~~---~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~  114 (333)
T d1ri6a_          55 VRPEFRVLAYRIAPDD---GALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED  114 (333)
T ss_dssp             ETTTTEEEEEEECTTT---CCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ECCCCeEEEEEEeCCC---CcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccc
Confidence            3458999999987521   111 1111224455778999999999988775 66888887654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.62  E-value=0.0016  Score=43.32  Aligned_cols=55  Identities=9%  Similarity=0.078  Sum_probs=39.6

Q ss_pred             cccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeE-EEeeCCCcEEEEecCC
Q psy1285           7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHL-ISNSKDQTIKLWDVRK   67 (118)
Q Consensus         7 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~~wd~~~   67 (118)
                      .+.++.+.|++...     ...+..+....+ ...+.++|||+++ +++..+++|.+||+..
T Consensus       234 v~~~~v~vvd~~~~-----~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         234 IGDSKVPVVDGRGE-----SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CTTCCCCEEECSSS-----CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             eCCCCcEEEEcccC-----CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            34566777766654     455566654443 5789999999986 5677899999999865

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.52  E-value=0.0032  Score=41.27  Aligned_cols=56  Identities=5%  Similarity=-0.050  Sum_probs=43.6

Q ss_pred             ccCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecCCCCc
Q psy1285           8 ASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG   70 (118)
Q Consensus         8 ~~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   70 (118)
                      +.++.+.|||+..     .+ ...+..+.+.+..+.|||||+.++.. .++.+.+|+......
T Consensus        89 s~~~~~~l~d~~~-----~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~  144 (470)
T d2bgra1          89 SYTASYDIYDLNK-----RQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS  144 (470)
T ss_dssp             CEEEEEEEEETTT-----TE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC
T ss_pred             ccCceEEEEECCC-----Cc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCce
Confidence            4457788999986     33 34567788899999999999999985 567899999876543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=94.06  E-value=0.077  Score=35.06  Aligned_cols=33  Identities=12%  Similarity=0.195  Sum_probs=24.1

Q ss_pred             CcEEEEEeCCCCCeEEE-eeCCCcEEEEecCCCC
Q psy1285          37 DGITFIDPKGDSRHLIS-NSKDQTIKLWDVRKFN   69 (118)
Q Consensus        37 ~~v~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~   69 (118)
                      .......++|||++|.. ...+++|.++|+.++.
T Consensus        72 P~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k  105 (441)
T d1qnia2          72 PHISMTDGRYDGKYLFINDKANTRVARIRLDIMK  105 (441)
T ss_dssp             CEEEEETTEEEEEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCcceecccCCCCEEEEEcCCCCEEEEEECCCCc
Confidence            34455566789998854 4568899999998754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=93.76  E-value=0.26  Score=30.09  Aligned_cols=35  Identities=6%  Similarity=0.014  Sum_probs=27.4

Q ss_pred             ecCccCcEEEEEeCCCCCeEEEeeCCCcEEEEecC
Q psy1285          32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR   66 (118)
Q Consensus        32 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~   66 (118)
                      +....+.+.+++|.++|+++++...++.+..++..
T Consensus        63 ~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          63 HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             EEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            34456789999999999988888777777777654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=92.87  E-value=0.4  Score=30.22  Aligned_cols=51  Identities=12%  Similarity=-0.053  Sum_probs=35.4

Q ss_pred             cEEEEEeCCCCCeEEEeeC-CCcEEEEecCCCCc-----------------------------cceecCCcEEEEeCCCC
Q psy1285          38 GITFIDPKGDSRHLISNSK-DQTIKLWDVRKFNG-----------------------------AANSKDQTIKLWDVRKF   87 (118)
Q Consensus        38 ~v~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~-----------------------------~s~~~d~~i~iwd~~~~   87 (118)
                      .+.++.|+|+|+++.+++. ...|.+|+......                             ++...+++|.+|++...
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4789999999998877654 45788887543211                             44456788889987655


Q ss_pred             c
Q psy1285          88 S   88 (118)
Q Consensus        88 ~   88 (118)
                      .
T Consensus       226 ~  226 (365)
T d1jofa_         226 T  226 (365)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.76  E-value=0.67  Score=27.10  Aligned_cols=39  Identities=13%  Similarity=-0.085  Sum_probs=26.6

Q ss_pred             eEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEeeC
Q psy1285          12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSK   56 (118)
Q Consensus        12 ~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   56 (118)
                      .|.|.|...     .... .+......+...+|||||+.||-...
T Consensus        20 ~l~i~d~dG-----~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~   58 (269)
T d2hqsa1          20 ELRVSDYDG-----YNQF-VVHRSPQPLMSPAWSPDGSKLAYVTF   58 (269)
T ss_dssp             EEEEEETTS-----CSCE-EEEEESSCEEEEEECTTSSEEEEEEC
T ss_pred             EEEEEcCCC-----CCcE-EEecCCCceeeeEECCCCCEEEEEEe
Confidence            577777764     3333 33445677889999999999986543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=91.15  E-value=0.8  Score=28.19  Aligned_cols=52  Identities=6%  Similarity=0.083  Sum_probs=34.1

Q ss_pred             CceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCe-EEEeeCCCcEEEEecC
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRH-LISNSKDQTIKLWDVR   66 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~i~~wd~~   66 (118)
                      .+.|.+||...     ......+........+++|.++++. .++.+.++.|...++.
T Consensus       246 ~g~I~~~dp~~-----g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         246 SSHIEVFGPDG-----GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TTEEEEECTTC-----BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCEEEEEeCCC-----CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            46677777654     4445555545567788999998864 4566667777766654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.37  E-value=0.87  Score=26.60  Aligned_cols=40  Identities=10%  Similarity=0.014  Sum_probs=28.3

Q ss_pred             cCceEEEEeCCCCCCCCCCceeeecCccCcEEEEEeCCCCCeEEEe
Q psy1285           9 SLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISN   54 (118)
Q Consensus         9 ~dg~v~iwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~   54 (118)
                      +++.|.+.|+..     +++ ..+..+.+.....+|||||+.|+-.
T Consensus        19 ~~~dl~~~d~~~-----g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~   58 (281)
T d1k32a2          19 CCDDLWEHDLKS-----GST-RKIVSNLGVINNARFFPDGRKIAIR   58 (281)
T ss_dssp             ETTEEEEEETTT-----CCE-EEEECSSSEEEEEEECTTSSEEEEE
T ss_pred             eCCcEEEEECCC-----CCE-EEEecCCCcccCEEECCCCCEEEEE
Confidence            345566667765     443 3456577778899999999998854

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.34  E-value=1.3  Score=26.46  Aligned_cols=50  Identities=8%  Similarity=0.133  Sum_probs=31.9

Q ss_pred             CceEEEEeCCCCCCCCCCceeeec--CccCcEEEEEeCCCCCeEEEeeC-CCcEEEEec
Q psy1285          10 LVTCFVWDRRTLNETTAKPVGVLA--GHRDGITFIDPKGDSRHLISNSK-DQTIKLWDV   65 (118)
Q Consensus        10 dg~v~iwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~-d~~i~~wd~   65 (118)
                      .+.|++||..      ++.+.++.  +.......+++.++|+.+++-.. ++.|.+|+.
T Consensus       177 ~~~V~~~d~~------G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         177 AHCVKVFNYE------GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             GTEEEEEETT------CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             ccceeeeecC------CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence            3456666654      34444442  34556788999999987766443 456888764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.27  E-value=1.2  Score=25.93  Aligned_cols=75  Identities=13%  Similarity=-0.015  Sum_probs=43.2

Q ss_pred             cCccCcEEEEEeCCCCCeEEEeeCC-CcEE--EEecCCCCc---------------------ccee---cCCcEEEEeCC
Q psy1285          33 AGHRDGITFIDPKGDSRHLISNSKD-QTIK--LWDVRKFNG---------------------AANS---KDQTIKLWDVR   85 (118)
Q Consensus        33 ~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~--~wd~~~~~~---------------------~s~~---~d~~i~iwd~~   85 (118)
                      ...........|+|++..++..+.+ +...  +.+......                     +..+   ....|.++++.
T Consensus       167 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         167 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             ecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            3455666778899999988766544 3333  444333211                     1111   12356777776


Q ss_pred             CCcceeeecccCcceeeEeeeee
Q psy1285          86 KFSNKTAQRNTFRAVCEQNWEYR  108 (118)
Q Consensus        86 ~~~~~~~~~~~~~~v~~~~~~~~  108 (118)
                      ... ...+......+....|+++
T Consensus       247 g~~-~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         247 GRF-KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             SCC-EEECCCSSSEEEEEEECCC
T ss_pred             CCC-EEEEeCCCCcEEeEEeCCC
Confidence            554 3445555566777888875

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.94  E-value=1.4  Score=26.36  Aligned_cols=31  Identities=13%  Similarity=0.144  Sum_probs=20.7

Q ss_pred             CcEEEEEeCCCCCeEEEeeCCCcEEEEecCCC
Q psy1285          37 DGITFIDPKGDSRHLISNSKDQTIKLWDVRKF   68 (118)
Q Consensus        37 ~~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   68 (118)
                      .....+++.++|.+++ .+.++.|++|.....
T Consensus       244 ~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         244 AQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             SCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             CCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence            3467777778776544 446777888877654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=88.91  E-value=1.4  Score=27.64  Aligned_cols=34  Identities=9%  Similarity=0.006  Sum_probs=26.6

Q ss_pred             cCcEEEEEeCCCCCeEE-EeeCCCcEEEEecCCCC
Q psy1285          36 RDGITFIDPKGDSRHLI-SNSKDQTIKLWDVRKFN   69 (118)
Q Consensus        36 ~~~v~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~   69 (118)
                      ......+.|+|+++++. +.-.+++|.+|++....
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            45678999999999874 55568899999986543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=84.81  E-value=2.8  Score=25.57  Aligned_cols=70  Identities=11%  Similarity=0.082  Sum_probs=40.2

Q ss_pred             cEEEEEeCCCCC-----eEEEeeCCCcEEEEecCCCCc------------------------------cceecCCcEEEE
Q psy1285          38 GITFIDPKGDSR-----HLISNSKDQTIKLWDVRKFNG------------------------------AANSKDQTIKLW   82 (118)
Q Consensus        38 ~v~~~~~~~~~~-----~l~s~~~d~~i~~wd~~~~~~------------------------------~s~~~d~~i~iw   82 (118)
                      ..+.++|++++.     +.++-+..+.|..||+.....                              ++....+.|.+|
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            346788877653     334445667777776532100                              333346778889


Q ss_pred             eCCCCcceeeecccCcceeeEeeee
Q psy1285          83 DVRKFSNKTAQRNTFRAVCEQNWEY  107 (118)
Q Consensus        83 d~~~~~~~~~~~~~~~~v~~~~~~~  107 (118)
                      |.........+.......+.+.|..
T Consensus       253 dp~~g~~~~~i~~p~~~~t~~afg~  277 (314)
T d1pjxa_         253 GPDGGQPKMRIRCPFEKPSNLHFKP  277 (314)
T ss_dssp             CTTCBSCSEEEECSSSCEEEEEECT
T ss_pred             eCCCCEEEEEEECCCCCEEEEEEeC
Confidence            8877665554443334456666654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=80.07  E-value=2.2  Score=25.67  Aligned_cols=30  Identities=10%  Similarity=0.009  Sum_probs=25.5

Q ss_pred             cEEEEEeCCCCCeEEEeeCCCcEEEEecCC
Q psy1285          38 GITFIDPKGDSRHLISNSKDQTIKLWDVRK   67 (118)
Q Consensus        38 ~v~~~~~~~~~~~l~s~~~d~~i~~wd~~~   67 (118)
                      .+..+++.|||+++++...+++|..+|...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g   58 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG   58 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC
Confidence            577899999999999988899888887653