Psyllid ID: psy12868

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLRAIACYRQRSIDE
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHcEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHcHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHEEEEEEEEEHHHcccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MCTQVGVGGLIVGYAVVGAFsfswietkeerpqiarvedltnKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLThqvkdgydgrtvhEIWSFPAALMFSLSIFTMigygnmvprtllGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTmedrrsegevspriivpsTACLWVLGGYVATGTVMFaewenwpildscYFCVTSLckigigdfvpganildsksghHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLRAIACYRQRSIDE
Flexible Loop (DISEMBL)
MCTQVGVGGLIVGYAVVGAFSFSWietkeerpqiarvedltnktvLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNlktdiglcfevirLRAIACYRQRSIDE
Low Complexity Region (SEG)
MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLRAIACYRQRSIDE
Disordered region (IsUnstruct)
***QVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRR**GEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLRAIACYR******
Disordered Region (DISOPRED)
MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVI***************
Disordered Region (DISEMBL)
MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTME********SPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLRAIACYRQRSIDE
Disordered Region (DISPRO)
MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLRAIACYRQ*****
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLRAIACYRQRSIDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q9ES08	396	Potassium channel subfami	yes	N/A	0.536	0.409	0.304	8e-17
Q3LS21	402	Potassium channel subfami	yes	N/A	0.536	0.402	0.298	1e-16
Q9JL58	365	Potassium channel subfami	no	N/A	0.536	0.443	0.298	3e-16
Q18120	461	TWiK family of potassium	no	N/A	0.854	0.559	0.250	5e-16
O17185	329	Two pore potassium channe	no	N/A	0.728	0.668	0.269	1e-15
Q9NPC2	374	Potassium channel subfami	yes	N/A	0.728	0.588	0.268	2e-15
Q9JIS4	538	Potassium channel subfami	no	N/A	0.596	0.334	0.289	3e-15
P57789	538	Potassium channel subfami	no	N/A	0.596	0.334	0.289	3e-15
O14649	394	Potassium channel subfami	no	N/A	0.738	0.565	0.248	5e-15
Q63ZI0	374	Potassium channel subfami	N/A	N/A	0.539	0.435	0.283	1e-14

>sp|Q9ES08|KCNK9_RAT Potassium channel subfamily K member 9 OS=Rattus norvegicus GN=Kcnk9 PE=1 SV=2

 Score = 88.2 bits (217), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 95  WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154
           W F  +  F++++ T IGYG+  P T  GKA  + YAV GIPL ++ F+++G+ +    R
Sbjct: 78  WKFAGSFYFAITVITTIGYGHAAPGTDAGKAFCMFYAVLGIPLTLVMFQSLGERMNTFVR 137

Query: 155 WLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYF 214
           +L   + +C    R +E  +   + V   +C+    G +  G   F++ E+W    + Y+
Sbjct: 138 YLLKRIKKCC-GMRNTEVSMENMVTVGFFSCM----GTLCLGAAAFSQCEDWSFFHAYYY 192

Query: 215 CVTSLCKIGIGDFVPGANILDSKSGHHIK---LIINFIYLLLGMGLIAMCFDLM 265
           C  +L  IG GDFV     L SK     K   +  +F+Y+L+G+ +I    +L+
Sbjct: 193 CFITLTTIGFGDFVA----LQSKGALQRKPFYVAFSFMYILVGLTVIGAFLNLV 242

pH-dependent, voltage-insensitive, background potassium channel protein.
Rattus norvegicus (taxid: 10116)

>sp|Q3LS21|KCNK9_MOUSE Potassium channel subfamily K member 9 OS=Mus musculus GN=Kcnk9 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 95  WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154
           W F  +  F++++ T IGYG+  P T  GKA  + YAV GIPL ++ F+++G+ +    R
Sbjct: 78  WKFAGSFYFAITVITTIGYGHAAPGTDAGKAFCMFYAVLGIPLTLVMFQSLGERMNTFVR 137

Query: 155 WLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYF 214
           +L   + +C    R +E  +   + V   +C+    G +  G   F++ E+W    + Y+
Sbjct: 138 YLLKRIKKCC-GMRNTEVSMENMVTVGFFSCM----GTLCLGAAAFSQCEDWSFFHAYYY 192

Query: 215 CVTSLCKIGIGDFVPGANILDSKSGHHIK---LIINFIYLLLGMGLIAMCFDLM 265
           C  +L  IG GDFV     L +K     K   +  +F+Y+L+G+ +I    +L+
Sbjct: 193 CFITLTTIGFGDFVA----LQAKGALQRKPFYVAFSFMYILVGLTVIGAFLNLV 242

pH-dependent, voltage-insensitive, background potassium channel protein.

Mus musculus (taxid: 10090)

>sp|Q9JL58|KCNK9_CAVPO Potassium channel subfamily K member 9 OS=Cavia porcellus GN=KCNK9 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 95  WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154
           W F  +  F++++ T IGYG+  P T  GKA  + YAV GIPL ++ F+++G+ +    R
Sbjct: 78  WKFAGSFYFAITVITTIGYGHAAPGTDAGKAFCMFYAVLGIPLTLVMFQSLGERMNTFVR 137

Query: 155 WLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYF 214
           +L   + +C    R +E  +   + V   +C+    G +  G   F++ E W    + Y+
Sbjct: 138 YLLKRIKKCC-GMRNTEVSMENMVTVGFFSCM----GTLCIGAAAFSQCEEWSFFHAYYY 192

Query: 215 CVTSLCKIGIGDFVPGANILDSKSGHHIK---LIINFIYLLLGMGLIAMCFDLM 265
           C  +L  IG GD+V     L SK     K   +  +F+Y+L+G+ +I    +L+
Sbjct: 193 CFITLTTIGFGDYVA----LQSKGALQRKPFYVAFSFMYILVGLTVIGAFLNLV 242

pH-dependent, voltage-insensitive, background potassium channel protein.

Cavia porcellus (taxid: 10141)

>sp|Q18120|TWK18_CAEEL TWiK family of potassium channels protein 18 OS=Caenorhabditis elegans GN=twk-18 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 136/303 (44%), Gaps = 45/303 (14%)

Query: 10  LIVGYAVVGAFSFSWIETKEERP----QIARVEDLTNKTVLKLWEITVYYN--IMNKTSW 63
           ++V Y ++GA+ F  IE + ER     Q    ++L  +TV K+ ++ +     +M     
Sbjct: 27  ILVAYTLLGAWIFWMIEGENEREMLIEQQKERDELIRRTVYKINQLQIKRQRRLMTAEEE 86

Query: 64  QNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLG 123
            N   + L  +Q+ L     D    + +H  W+F  ++ + ++++T IGYGN+VP T  G
Sbjct: 87  YNRTAKVLTTFQETLGIVPADM--DKDIH--WTFLGSIFYCMTVYTTIGYGNIVPGTGWG 142

Query: 124 KATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECT------MEDRRSEG----E 173
           +  T++YA  GIPL VL    +G + A+  + L+ +  + T      + ++ SE     E
Sbjct: 143 RFATILYAFIGIPLTVLSLYCLGSLFAKGCKMLWRFFLKSTRVVSKDLSNKISEAADNIE 202

Query: 174 VSPRIIVPS----------------TACLWVLGGYVATGTVMFAEWENWPILDSCYFCVT 217
                I PS                +  L +   +V    V+F   E W    S YF + 
Sbjct: 203 EGTTAITPSAEKTENNDDDLLSFPISGLLLITVIWVIFCAVLFTFLEEWDFGTSLYFTLI 262

Query: 218 SLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLK 277
           S   IG GD +P        S +    I+  + LL+G+ L++    L+++ +      +K
Sbjct: 263 SFTTIGFGDILP--------SDYDFMPIVG-VLLLIGLSLVSTVMTLIQQQIEALASGMK 313

Query: 278 TDI 280
            +I
Sbjct: 314 DNI 316

Outwardly rectifying potassium channel protein; activity is sharply augmented by increase in temperature.

Caenorhabditis elegans (taxid: 6239)

>sp|O17185|SUP9_CAEEL Two pore potassium channel protein sup-9 OS=Caenorhabditis elegans GN=sup-9 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 36/256 (14%)

Query: 14  YAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLI 73
           Y +VGA  F  +ET+ E  Q   V+ +  K   K       Y I+  T            
Sbjct: 18  YLLVGAAVFDALETENEILQRKLVQRVREKLKTKYNMSNADYEILEAT------------ 65

Query: 74  YQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVF 133
             K++ H  K GY        W F  A  F+ ++ T IGYG+  P T  GK   ++YA+ 
Sbjct: 66  IVKSVPH--KAGYQ-------WKFSGAFYFATTVITTIGYGHSTPMTDAGKVFCMLYALA 116

Query: 134 GIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGY- 192
           GIPL ++ F+++G+ +      L  ++       RR+ G+   + IV S+  +    G+ 
Sbjct: 117 GIPLGLIMFQSIGERMNTFAAKLLRFI-------RRAAGK---QPIVTSSDLIIFCTGWG 166

Query: 193 ---VATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFI 249
              +  G  MF+ +ENW   D+ Y+C  +L  IG GD+V       S       +  + +
Sbjct: 167 GLLIFGGAFMFSSYENWTYFDAVYYCFVTLTTIGFGDYV-ALQKRGSLQTQPEYVFFSLV 225

Query: 250 YLLLGMGLIAMCFDLM 265
           ++L G+ +I+   +L+
Sbjct: 226 FILFGLTVISAAMNLL 241

Potassium channel involved in coordination of muscle contraction.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9NPC2|KCNK9_HUMAN Potassium channel subfamily K member 9 OS=Homo sapiens GN=KCNK9 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 120/257 (46%), Gaps = 37/257 (14%)

Query: 14  YAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVY--YNIMNKTSWQNACDETL 71
           Y +VGA  F  +E+  E         +  +  LK  EI +   YNI ++   Q      L
Sbjct: 18  YLLVGAAVFDALESDHE---------MREEEKLKAEEIRIKGKYNISSEDYRQ----LEL 64

Query: 72  LIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYA 131
           +I Q   +   + G         W F  +  F++++ T IGYG+  P T  GKA  + YA
Sbjct: 65  VILQ---SEPHRAGVQ-------WKFAGSFYFAITVITTIGYGHAAPGTDAGKAFCMFYA 114

Query: 132 VFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGG 191
           V GIPL ++ F+++G+ +    R+L   + +C    R ++  +   + V   +C+    G
Sbjct: 115 VLGIPLTLVMFQSLGERMNTFVRYLLKRIKKCCGM-RNTDVSMENMVTVGFFSCM----G 169

Query: 192 YVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIK---LIINF 248
            +  G   F++ E W    + Y+C  +L  IG GD+V     L +K     K   +  +F
Sbjct: 170 TLCIGAAAFSQCEEWSFFHAYYYCFITLTTIGFGDYV----ALQTKGALQKKPLYVAFSF 225

Query: 249 IYLLLGMGLIAMCFDLM 265
           +Y+L+G+ +I    +L+
Sbjct: 226 MYILVGLTVIGAFLNLV 242

pH-dependent, voltage-insensitive, background potassium channel protein.

Homo sapiens (taxid: 9606)

>sp|Q9JIS4|KCNKA_RAT Potassium channel subfamily K member 10 OS=Rattus norvegicus GN=Kcnk10 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 10/190 (5%)

Query: 95  WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154
           W   +A  F+ ++ T IGYGN+ P T  GK   ++YA+FGIPL+      +G  L   F 
Sbjct: 152 WDLGSAFFFAGTVITTIGYGNIAPSTEGGKIFCILYAIFGIPLFGFLLAGIGDQLGTIFG 211

Query: 155 WLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGG---YVATGTVMFAEWENWPILDS 211
                + +   + + S+ ++  R+I   +  L++L G   +V    V+F   E W  L+S
Sbjct: 212 KSIARVEKVFRKKQVSQTKI--RVI---STILFILAGCIVFVTIPAVIFKYIEGWTALES 266

Query: 212 CYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRV 271
            YF V +L  +G GDFV G N   +    +  L+  + ++L+G+   A    ++ + +RV
Sbjct: 267 IYFVVVTLTTVGFGDFVAGGNAGINYREWYKPLV--WFWILVGLAYFAAVLSMIGDWLRV 324

Query: 272 KVRNLKTDIG 281
             +  K ++G
Sbjct: 325 LSKKTKEEVG 334

Outward rectifying potassium channel. Produces rapidly activating and non-inactivating outward rectifier K(+) currents. Activated by arachidonic acid and other naturally occurring unsaturated free fatty acids.

Rattus norvegicus (taxid: 10116)

>sp|P57789|KCNKA_HUMAN Potassium channel subfamily K member 10 OS=Homo sapiens GN=KCNK10 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 10/190 (5%)

Query: 95  WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154
           W   +A  F+ ++ T IGYGN+ P T  GK   ++YA+FGIPL+      +G  L   F 
Sbjct: 152 WDLGSAFFFAGTVITTIGYGNIAPSTEGGKIFCILYAIFGIPLFGFLLAGIGDQLGTIFG 211

Query: 155 WLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGG---YVATGTVMFAEWENWPILDS 211
                + +   + + S+ ++  R+I   +  L++L G   +V    V+F   E W  L+S
Sbjct: 212 KSIARVEKVFRKKQVSQTKI--RVI---STILFILAGCIVFVTIPAVIFKYIEGWTALES 266

Query: 212 CYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRV 271
            YF V +L  +G GDFV G N   +    +  L+  + ++L+G+   A    ++ + +RV
Sbjct: 267 IYFVVVTLTTVGFGDFVAGGNAGINYREWYKPLV--WFWILVGLAYFAAVLSMIGDWLRV 324

Query: 272 KVRNLKTDIG 281
             +  K ++G
Sbjct: 325 LSKKTKEEVG 334

Outward rectifying potassium channel. Produces rapidly activating and non-inactivating outward rectifier K(+) currents. Activated by arachidonic acid and other naturally occurring unsaturated free fatty acids.

Homo sapiens (taxid: 9606)

>sp|O14649|KCNK3_HUMAN Potassium channel subfamily K member 3 OS=Homo sapiens GN=KCNK3 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 31/254 (12%)

Query: 14  YAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLI 73
           Y +VGA  F  +E++ E  +  R+E       L+  E+   YN+      Q   +E   +
Sbjct: 18  YLLVGAAVFDALESEPELIERQRLE-------LRQQELRARYNLS-----QGGYEELERV 65

Query: 74  YQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVF 133
             +   H  K G         W F  +  F++++ T IGYG+  P T  GK   + YA+ 
Sbjct: 66  VLRLKPH--KAGVQ-------WRFAGSFYFAITVITTIGYGHAAPSTDGGKVFCMFYALL 116

Query: 134 GIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYV 193
           GIPL ++ F+++G+ +    R+L     +  +  RR++  ++  +++   +C+  L    
Sbjct: 117 GIPLTLVMFQSLGERINTLVRYLLHRAKK-GLGMRRADVSMANMVLIGFFSCISTL---- 171

Query: 194 ATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVP--GANILDSKSGHHIKLIINFIYL 251
             G   F+ +E+W    + Y+C  +L  IG GD+V       L ++  +   +  +F+Y+
Sbjct: 172 CIGAAAFSHYEHWTFFQAYYYCFITLTTIGFGDYVALQKDQALQTQPQY---VAFSFVYI 228

Query: 252 LLGMGLIAMCFDLM 265
           L G+ +I    +L+
Sbjct: 229 LTGLTVIGAFLNLV 242

pH-dependent, voltage-insensitive, background potassium channel protein. Rectification direction results from potassium ion concentration on either side of the membrane. Acts as an outward rectifier when external potassium concentration is low. When external potassium concentration is high, current is inward.

Homo sapiens (taxid: 9606)

>sp|Q63ZI0|KCNK9_XENLA Potassium channel subfamily K member 9 OS=Xenopus laevis GN=kcnk9 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 10/173 (5%)

Query: 95  WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154
           W F  +  F++++ T IGYG+  P T  GKA  + YAV GIPL ++ F+++G+ +    +
Sbjct: 78  WKFAGSFYFAITVITTIGYGHAAPGTDAGKAFCMFYAVLGIPLTLVMFQSLGERMNTFVK 137

Query: 155 WLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYF 214
           +L   + +C         +VS   +V  T   +   G +  G   F+ +E W    + Y+
Sbjct: 138 YLLKRIKKCC---GMHSTDVSMENMV--TVGFFSCMGTLCIGAAAFSHYEEWSFFQAYYY 192

Query: 215 CVTSLCKIGIGDFVP--GANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLM 265
           C  +L  IG GD+V       L  K    + +  +F+Y+L+G+ +I    +L+
Sbjct: 193 CFITLTTIGFGDYVALQKNRALQKKP---LYVAFSFMYILVGLTVIGAFLNLV 242

pH-dependent, voltage-insensitive, background potassium channel protein.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
242007082	365	conserved hypothetical protein [Pediculu	0.986	0.816	0.605	1e-103
157112814	347	hypothetical protein AaeL_AAEL006293 [Ae	0.976	0.850	0.589	1e-101
312382396	346	hypothetical protein AND_04932 [Anophele	0.963	0.841	0.582	1e-100
237858762	347	potassium channel subfamily K member 9-l	0.990	0.861	0.642	3e-99
347963124	349	AGAP000079-PA [Anopheles gambiae str. PE	0.973	0.842	0.585	6e-99
170050285	347	potassium channel subfamily K member 9 [	0.973	0.847	0.590	3e-98
357609690	315	hypothetical protein KGM_01972 [Danaus p	0.973	0.933	0.578	4e-94
332373816	354	unknown [Dendroctonus ponderosae]	0.966	0.824	0.517	2e-88
195482639	388	GE11090 [Drosophila yakuba] gi|195497669	0.973	0.757	0.518	6e-87
194900188	388	GG16444 [Drosophila erecta] gi|190651342	0.973	0.757	0.518	7e-87

>gi|242007082|ref|XP_002424371.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507771|gb|EEB11633.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/307 (60%), Positives = 224/307 (72%), Gaps = 9/307 (2%)

Query: 1   MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNK 60
           MCTQVGVGGLIVGYA+VGAF F  IE  +E  Q   V+DL +    +LWE+T   NI N+
Sbjct: 57  MCTQVGVGGLIVGYAIVGAFGFISIEVVDETEQDKFVKDLIDYCADRLWELTASENIFNE 116

Query: 61  TSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRT 120
           T W+    + LL +Q+ +T  +K GYDGRT  ++WSFPAALMF LSIFTMIGYGNM P+T
Sbjct: 117 TVWKKESGKLLLEFQREMTDAIKHGYDGRTNQDVWSFPAALMFCLSIFTMIGYGNMTPKT 176

Query: 121 LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVS----- 175
            LGK  TV+YA FGIPLYVLYF NMGK+LA +FRWLYT LY C++E R +    S     
Sbjct: 177 PLGKGLTVLYAAFGIPLYVLYFMNMGKILATTFRWLYTRLYLCSVEKRFARHRESNTSVT 236

Query: 176 ----PRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGA 231
                R+IVPSTACLWV+GGYV TGT+MFAEWENW  LDS YFC+TSLCKIGIGDFVPG 
Sbjct: 237 LQPPQRVIVPSTACLWVIGGYVLTGTIMFAEWENWNYLDSVYFCMTSLCKIGIGDFVPGQ 296

Query: 232 NILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLRA 291
           NI DS+ G+  KL+INFIYLLLGMGLIAMC++LMRE+VRV+ R +K     C + ++   
Sbjct: 297 NISDSREGNQTKLVINFIYLLLGMGLIAMCYNLMREEVRVRAREMKQFFKRCLDDVQSET 356

Query: 292 IACYRQR 298
           +  Y  R
Sbjct: 357 VDRYTGR 363

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112814|ref|XP_001657627.1| hypothetical protein AaeL_AAEL006293 [Aedes aegypti] gi|108877906|gb|EAT42131.1| AAEL006293-PA [Aedes aegypti]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/302 (58%), Positives = 219/302 (72%), Gaps = 7/302 (2%)

Query: 1   MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNK 60
           MCTQVGVGGLIV YA+VGA SF  IET+E  P I  VE+L      +LW++T  +N+ N 
Sbjct: 36  MCTQVGVGGLIVVYALVGAASFMSIETQEPNPLIEHVENLRRNCAAELWDVTEQHNLFNS 95

Query: 61  TSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRT 120
           + W    D  L  YQ +    ++ GYDGR   E+W+FPAALMF L++FTMIGYGNMVPRT
Sbjct: 96  SIWHLEADIVLKRYQDDFAEAIRKGYDGRHPEEVWNFPAALMFCLAVFTMIGYGNMVPRT 155

Query: 121 LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRS----EGEVSP 176
             GK  TV+YA FGIPLY+LYF NMGKVLA +F+WLYTWL+EC+          +G   P
Sbjct: 156 AWGKGATVIYATFGIPLYILYFMNMGKVLASTFKWLYTWLHECSHSQDDDMNIEDGSGVP 215

Query: 177 ---RIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANI 233
              RIIVP+TACLWV+  Y+ATGT+MFAEWE W  LDS YFCVTSLCKIGIGD VPGANI
Sbjct: 216 QKKRIIVPTTACLWVISIYIATGTIMFAEWEKWTYLDSAYFCVTSLCKIGIGDLVPGANI 275

Query: 234 LDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLRAIA 293
           LDS+SG   KL+INF+Y+LLGMGL+AMC+ LMRE+VR+K++ +K D  LC E +  +   
Sbjct: 276 LDSQSGKPTKLVINFVYMLLGMGLVAMCYILMREEVRIKMQEIKEDTRLCLEDMSAKFAK 335

Query: 294 CY 295
           C+
Sbjct: 336 CF 337

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312382396|gb|EFR27871.1| hypothetical protein AND_04932 [Anopheles darlingi]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/304 (58%), Positives = 219/304 (72%), Gaps = 13/304 (4%)

Query: 1   MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNK 60
           MCTQVGVGGLIV YA+VGA SF  IET+E  P I  V  L      +LW++T   N+ N 
Sbjct: 36  MCTQVGVGGLIVAYALVGAASFMSIETQEPNPLIEHVITLRRNCAAELWDVTEQLNLFNS 95

Query: 61  TSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRT 120
           + W    D+ L  YQ +    ++ GYDGR+  E+W+FPAALMF L++FTMIGYGNMVPRT
Sbjct: 96  SMWHYEADQVLKRYQDDFAEAIRRGYDGRSPEEVWNFPAALMFCLAVFTMIGYGNMVPRT 155

Query: 121 LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVS----- 175
             GK  TV+YA FGIPLY+LYF NMGKVLA +F+WLYTW +EC+    RS+ E++     
Sbjct: 156 AWGKGATVIYATFGIPLYILYFMNMGKVLASTFKWLYTWFHECS---HRSDDELAMEDGL 212

Query: 176 -----PRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPG 230
                 RIIVP+TACLWV+  Y+ATGT+MFAEWE W  LDS YFCVTSLCKIGIGD VPG
Sbjct: 213 GLAPRKRIIVPTTACLWVITIYIATGTIMFAEWEKWTYLDSAYFCVTSLCKIGIGDLVPG 272

Query: 231 ANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLR 290
           ANILDS+SG   KL+INF+Y+LLGMGL+AMC+ LMRE+VR+K++ +K D  LC E +  +
Sbjct: 273 ANILDSQSGKPTKLVINFVYMLLGMGLVAMCYILMREEVRIKMQEIKEDTRLCLEDLSAK 332

Query: 291 AIAC 294
              C
Sbjct: 333 FAKC 336

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|237858762|ref|NP_001153819.1| potassium channel subfamily K member 9-like [Acyrthosiphon pisum] gi|239793609|dbj|BAH72913.1| hypothetical protein [Acyrthosiphon pisum]

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/305 (64%), Positives = 230/305 (75%), Gaps = 6/305 (1%)

Query: 1   MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNK 60
           MCTQVGVGGL+VGYAVVGAF F  IE +    Q   VE L +   + +W  T  YN++ +
Sbjct: 40  MCTQVGVGGLVVGYAVVGAFCFIQIEGQAGDAQHHAVEQLRHNCSVNVWNATNTYNVLYR 99

Query: 61  TSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRT 120
            +W     + L  +Q NL   VK GYDGRT  E WSF AALMFSLSIFTM GYGN+VP+T
Sbjct: 100 DNWTRQVTDALTHFQVNLALIVKKGYDGRTTEETWSFSAALMFSLSIFTMNGYGNVVPKT 159

Query: 121 LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDR------RSEGEV 174
           +LGKA TVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTW+Y+C+MED+        +   
Sbjct: 160 MLGKAATVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWVYQCSMEDKAGGDLYNQQLPQ 219

Query: 175 SPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANIL 234
             R+IVPSTACLWVL  YVATGTV F   E+W  LDS +FCVTSLCKIGI +FVP  +I 
Sbjct: 220 KSRVIVPSTACLWVLAAYVATGTVTFVTLEDWSYLDSTFFCVTSLCKIGIENFVPVGSIT 279

Query: 235 DSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLRAIAC 294
           D+ + H +KL+I FIYLLLGMG+IAMCFDLMREDV+V+VRNLK DIGLCFE IRLRA+A 
Sbjct: 280 DAVADHPMKLVIKFIYLLLGMGIIAMCFDLMREDVQVRVRNLKMDIGLCFEDIRLRAVAV 339

Query: 295 YRQRS 299
           YR+R+
Sbjct: 340 YRRRN 344

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963124|ref|XP_001237358.3| AGAP000079-PA [Anopheles gambiae str. PEST] gi|333467347|gb|EAU77340.3| AGAP000079-PA [Anopheles gambiae str. PEST]

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 178/304 (58%), Positives = 218/304 (71%), Gaps = 10/304 (3%)

Query: 1   MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNK 60
           MCTQVGVGGLIV YA+VGA SF  IET+E  P I  V  L      +LW++T   N+ N 
Sbjct: 36  MCTQVGVGGLIVAYALVGAASFMSIETQEPNPLIEHVVTLRRNCAAELWDVTEQLNLFNS 95

Query: 61  TSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRT 120
           + W    D  L  YQ +    ++ GYDGR+  E+W+FPAALMF L++FTMIGYGNMVPRT
Sbjct: 96  SIWHYEADLVLKRYQDDFAEAIRRGYDGRSPEEVWNFPAALMFCLAVFTMIGYGNMVPRT 155

Query: 121 LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTM---ED-----RRSEG 172
             GK  TV+YA FGIPLY+LYF NMGKVLA +F+WLYTW +EC+    ED         G
Sbjct: 156 AWGKGATVIYATFGIPLYILYFMNMGKVLASTFKWLYTWFHECSHRSDEDGGLALEEGPG 215

Query: 173 EVSP--RIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPG 230
            ++P  RIIVP+TACLWV+  Y+ATGT+MFAEWE W  LDS YFCVTSLCKIGIGD VPG
Sbjct: 216 GLAPRKRIIVPTTACLWVITIYIATGTIMFAEWEKWTYLDSAYFCVTSLCKIGIGDLVPG 275

Query: 231 ANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLR 290
           ANILDS+SG   KL+INF+Y+LLGMGL+AMC+ LMRE+VR+K++ +K D  LC E +  +
Sbjct: 276 ANILDSQSGKPTKLVINFVYMLLGMGLVAMCYILMREEVRIKMQEIKEDTRLCLEDLSSK 335

Query: 291 AIAC 294
              C
Sbjct: 336 FAKC 339

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170050285|ref|XP_001860331.1| potassium channel subfamily K member 9 [Culex quinquefasciatus] gi|167871940|gb|EDS35323.1| potassium channel subfamily K member 9 [Culex quinquefasciatus]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 179/303 (59%), Positives = 217/303 (71%), Gaps = 9/303 (2%)

Query: 1   MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNK 60
           MCTQVGVGGLIV YA+VGA SF  IET+E  P I  V  L      +LW++T   N+ N 
Sbjct: 36  MCTQVGVGGLIVVYALVGAASFMSIETQEPNPLIEYVSVLRRNCAAELWDVTEQNNLFNS 95

Query: 61  TSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRT 120
           + W    D  L  YQ +L   ++ GYDGRT  E W FPAALMF L++FTMIGYGNMVPRT
Sbjct: 96  SIWHYEADVVLKRYQDDLADAIRRGYDGRTPEETWIFPAALMFCLAVFTMIGYGNMVPRT 155

Query: 121 LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECT--------MEDRRSEG 172
             GK  TV+YA FGIPLY+LYF NMGKVLA +F+WLYTWL+EC+        +ED     
Sbjct: 156 AWGKGATVIYATFGIPLYILYFMNMGKVLASTFKWLYTWLHECSHGHDDDLALEDGNGVP 215

Query: 173 EVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGAN 232
           +   RIIVP+TACLWV+  Y+ATGT+MFAEWE W  LDS YFCVTSLCKIGIGD VPGAN
Sbjct: 216 Q-RKRIIVPTTACLWVITIYIATGTIMFAEWEKWSYLDSAYFCVTSLCKIGIGDLVPGAN 274

Query: 233 ILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLRAI 292
           ILDS+SG   KL+INF+Y+LLGMGL+AMC+ LMRE+VR+K++ +K D  LC E +  +  
Sbjct: 275 ILDSQSGKPTKLVINFVYMLLGMGLVAMCYILMREEVRIKMQEIKEDTRLCLEDMSSKFA 334

Query: 293 ACY 295
            C+
Sbjct: 335 KCF 337

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357609690|gb|EHJ66578.1| hypothetical protein KGM_01972 [Danaus plexippus]

 Score =  350 bits (898), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 173/299 (57%), Positives = 213/299 (71%), Gaps = 5/299 (1%)

Query: 1   MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNK 60
           M TQVGVG L+V YA++GA SF  IE      Q+ RV       V +LW IT  YN++N 
Sbjct: 1   MFTQVGVGALVVCYAILGAASFMHIEKDSPDMQLVRVIKWRQSCVEQLWGITNKYNVLNY 60

Query: 61  TSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRT 120
           T+W  + +  L  +Q N+T  V  GY+GR+  +IWSFPAALM+SLS+FTMIGYGN+VP+T
Sbjct: 61  TAWMASSNSVLKDFQNNITTAVHLGYNGRSSEDIWSFPAALMYSLSVFTMIGYGNVVPKT 120

Query: 121 LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRR--SEGEVSP-- 176
           L GK  T+ YA FGIP+YVLYF NMGKVLAQSF+WLY   YEC+  +     +GE+ P  
Sbjct: 121 LWGKIGTIAYACFGIPIYVLYFCNMGKVLAQSFKWLYITAYECSRREDPLLEDGELQPVK 180

Query: 177 -RIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILD 235
            +I VPSTACLWV+  Y+ TGT+MF  WE W  LDS YFCV SLCKIG GDFVPGANI D
Sbjct: 181 RKITVPSTACLWVISFYILTGTIMFGAWEKWNYLDSTYFCVISLCKIGFGDFVPGANIAD 240

Query: 236 SKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLRAIAC 294
           S  G H+KL+INFIY+LLGMGL+AMC++LM EDVRVKVR L+ D+  C + I L+   C
Sbjct: 241 SAEGSHLKLVINFIYVLLGMGLVAMCYNLMCEDVRVKVRELRQDLKNCLDDITLKITVC 299

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373816|gb|AEE62049.1| unknown [Dendroctonus ponderosae]

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/294 (51%), Positives = 204/294 (69%), Gaps = 2/294 (0%)

Query: 1   MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNK 60
           MCTQVGVG LI+GY V+GA  F  IE      ++  V  L NKT+  ++   +  NI ++
Sbjct: 48  MCTQVGVGALIIGYTVIGAVGFMHIEKSARNSEVTEVSMLRNKTLKMIFAAVMKNNIFDR 107

Query: 61  TSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRT 120
             +    D+ L  +Q  +T   K GYD R++ E+WSFPAALMF LSI TM+GYGNMVP+T
Sbjct: 108 RQFHADVDQVLKNHQLEVTKVFKHGYDERSMEEVWSFPAALMFCLSIITMVGYGNMVPKT 167

Query: 121 LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIV 180
             GK  T+VYA+FGIPLY+LYF NMGK+LA SF+W+Y  +YEC+ E  + EG    +IIV
Sbjct: 168 KEGKILTMVYALFGIPLYILYFMNMGKILAGSFKWIYRRIYECSTE--KDEGSTRKKIIV 225

Query: 181 PSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGH 240
           PSTACLWV+  Y+ TG +M +EWE W  LDS YFCVTSL K+G GD VPGA++  S  G 
Sbjct: 226 PSTACLWVIFAYILTGAIMLSEWEKWDFLDSTYFCVTSLGKVGFGDLVPGADVNASNHGS 285

Query: 241 HIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVIRLRAIAC 294
             KL+INF+Y+LLG+GL+AMC++LMRE+++VK++ +  D   C E  ++R + C
Sbjct: 286 QTKLVINFVYILLGLGLVAMCYNLMREEIKVKLKEMNEDFNQCLEDTKVRFLNC 339

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195482639|ref|XP_002086800.1| GE11090 [Drosophila yakuba] gi|195497669|ref|XP_002096199.1| GE25195 [Drosophila yakuba] gi|194182300|gb|EDW95911.1| GE25195 [Drosophila yakuba] gi|194186590|gb|EDX00202.1| GE11090 [Drosophila yakuba]

 Score =  326 bits (836), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 171/330 (51%), Positives = 212/330 (64%), Gaps = 36/330 (10%)

Query: 1   MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNK 60
           MCTQVGVG LIV YA+ GAF+F  IE + E      V +L      KLW IT  +NI+++
Sbjct: 46  MCTQVGVGALIVIYAICGAFAFMHIERQFEDKTAGLVMELRQNCSQKLWSITEEHNIIDR 105

Query: 61  TSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRT 120
             W  A ++ L  YQ  +   VK GY GR+  +IWSFPAALMF LS+ TMIGYGNMVPRT
Sbjct: 106 RLWTEATNKVLREYQAQIAGVVKHGYVGRSPEQIWSFPAALMFCLSVITMIGYGNMVPRT 165

Query: 121 LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRS------EGEV 174
             GK  TV+YA FGIPLY+LYF NMG+VLA+SF++LY  L++CT E  R       EG V
Sbjct: 166 PWGKGLTVIYATFGIPLYILYFLNMGRVLARSFKFLYRSLHDCTQEHPRLDRIDALEGGV 225

Query: 175 S---PRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGA 231
           S    ++IVPSTACLWV+  YV TGTVMFA WE W +L+S YFC+TSLCKIG GDFVPGA
Sbjct: 226 SLTRKKVIVPSTACLWVIFFYVLTGTVMFANWERWSLLNSFYFCMTSLCKIGFGDFVPGA 285

Query: 232 NILDSK---------------------------SGHHIKLIINFIYLLLGMGLIAMCFDL 264
           ++  +                            +  H KL INF+Y+LLGMGL+AMC +L
Sbjct: 286 SLTTTADVNAATQKLQEDISADPAELAQLQSVAADQHSKLAINFVYMLLGMGLVAMCRNL 345

Query: 265 MREDVRVKVRNLKTDIGLCFEVIRLRAIAC 294
           MRE+VR+K R ++ D  LC E  RLR + C
Sbjct: 346 MREEVRLKAREMREDAKLCMEDTRLRFVGC 375

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194900188|ref|XP_001979639.1| GG16444 [Drosophila erecta] gi|190651342|gb|EDV48597.1| GG16444 [Drosophila erecta]

 Score =  326 bits (836), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 171/330 (51%), Positives = 212/330 (64%), Gaps = 36/330 (10%)

Query: 1   MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNK 60
           MCTQVGVG LIV YA+ GAF+F  IE +       RV +L      +LW IT  +NI+++
Sbjct: 46  MCTQVGVGALIVIYAICGAFAFMHIERQFVDETAGRVMELRQNFSQQLWSITEQHNIIDR 105

Query: 61  TSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRT 120
             W  A +E L  YQ  +   VK GY GR+  +IWSFPAALMF LS+ TMIGYGNMVPRT
Sbjct: 106 RLWTEATNEVLRNYQAKIAGVVKHGYVGRSPEQIWSFPAALMFCLSVITMIGYGNMVPRT 165

Query: 121 LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRS------EGEV 174
             GK  TV+YA FGIPLY+LYF NMG+VLA+SF++LY  L++CT E  R       EG V
Sbjct: 166 PWGKGFTVIYATFGIPLYILYFLNMGRVLARSFKFLYRSLHDCTQEHPRLDRMDALEGGV 225

Query: 175 S---PRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGA 231
           S    ++IVPSTACLWV+  YV TGTVMFA WE W +L+S YFC+TSLCKIG GDFVPGA
Sbjct: 226 SMSRKKVIVPSTACLWVIFFYVLTGTVMFANWERWSLLNSFYFCMTSLCKIGFGDFVPGA 285

Query: 232 NILDSK---------------------------SGHHIKLIINFIYLLLGMGLIAMCFDL 264
           ++  +                            +  H KL INF+Y+LLGMGL+AMC +L
Sbjct: 286 SLTTTADVNAATQKLQEDISADPAELAQLQSVAADQHSKLAINFVYMLLGMGLVAMCRNL 345

Query: 265 MREDVRVKVRNLKTDIGLCFEVIRLRAIAC 294
           MRE+VR+K R ++ D  LC E  RLR + C
Sbjct: 346 MREEVRLKAREMREDAKLCMEDTRLRFVGC 375

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
FB|FBgn0038621	389	CG10864 [Drosophila melanogast	0.781	0.606	0.563	1.7e-84
FB|FBgn0033257	395	CG8713 [Drosophila melanogaste	0.526	0.402	0.341	5.3e-49
WB|WBGene00010784	372	twk-48 [Caenorhabditis elegans	0.513	0.416	0.331	9.6e-44
FB|FBgn0035192	729	CG9194 [Drosophila melanogaste	0.526	0.218	0.331	4.2e-39
WB|WBGene00006690	676	twk-39 [Caenorhabditis elegans	0.513	0.229	0.327	5e-38
FB|FBgn0027589	918	CG1688 [Drosophila melanogaste	0.374	0.123	0.367	2.8e-32
FB|FBgn0259242	484	CG42340 [Drosophila melanogast	0.413	0.258	0.333	2.5e-29
FB|FBgn0260971	1009	CG42594 [Drosophila melanogast	0.327	0.098	0.367	1.8e-23
ZFIN|ZDB-GENE-120709-43	383	si:ch211-283f6.10 "si:ch211-28	0.539	0.425	0.300	1.3e-21
UNIPROTKB|E1BEH3	335	KCNK15 "Uncharacterized protei	0.539	0.486	0.335	5.2e-21

FB|FBgn0038621 CG10864 [Drosophila melanogaster (taxid:7227)]

 Score = 689 (247.6 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
 Identities = 138/245 (56%), Positives = 169/245 (68%)

Query:     1 MCTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNK 60
             MCTQVGVG LIV YA+ GAF+F  IE +        V +L      +LW IT  +NI+++
Sbjct:    47 MCTQVGVGALIVIYAICGAFAFMHIERQFVDETAGHVMELRQNCSQQLWSITEQHNIIDR 106

Query:    61 TSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRT 120
               W  A ++ L  YQ  +   VK GY GR+  +IWSFPAALMF LS+ TMIGYGNMVPRT
Sbjct:   107 RRWTEATNDVLREYQSQIAGVVKHGYVGRSPEQIWSFPAALMFCLSVITMIGYGNMVPRT 166

Query:   121 LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTME----DRRS--EGEV 174
               GK  TV+YA FGIPLY+LYF NMG+VLA+SF++LY  L++CT E    DR    EG V
Sbjct:   167 PWGKGFTVIYATFGIPLYILYFLNMGRVLARSFKFLYRSLHDCTQEHPRLDRMDALEGGV 226

Query:   175 S---PRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGA 231
                  ++IVPSTACLWV+  YV TGTVMFA WE W +L+S YFC+TSLCKIG GDFVPGA
Sbjct:   227 GMTRKKVIVPSTACLWVIFFYVLTGTVMFANWEKWSLLNSFYFCMTSLCKIGFGDFVPGA 286

Query:   232 NILDS 236
             ++  S
Sbjct:   287 SLTTS 291

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

FB|FBgn0033257 CG8713 [Drosophila melanogaster (taxid:7227)]

 Score = 270 (100.1 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
 Identities = 58/170 (34%), Positives = 98/170 (57%)

Query:     1 MCTQVGVGGLIVGYAVVGAFSFSWIET------KEERPQIARVEDLTNKTVLKLWEITVY 54
             M + VG+  L+  Y + GAF F  IE       K E+P      + + + + ++WE+T  
Sbjct:    30 MFSNVGIILLVTFYIIGGAFIFQSIEIFEYERLKSEKPHRFIARNFSGECLSRIWELTAE 89

Query:    55 -YNIMNKTSWQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGY 113
               +  +  +++   ++ LL YQ+ +   VK    G  V + WSF  A ++SL++ T IGY
Sbjct:    90 NISFFDHHAYRRRVNDVLLDYQRAI---VKKQLKGPDVEQ-WSFSGAFLYSLTVITTIGY 145

Query:   114 GNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYEC 163
             GN+ P +  GK  T++YA+ G+PL++LY  N+G VLA+SF+W+Y+ +  C
Sbjct:   146 GNITPHSECGKLVTILYAIIGMPLFLLYLSNIGDVLAKSFKWIYSKVCLC 195

GO:0005250 "A-type (transient outward) potassium channel activity" evidence=ISS

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

WB|WBGene00010784 twk-48 [Caenorhabditis elegans (taxid:6239)]

 Score = 262 (97.3 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 52/157 (33%), Positives = 88/157 (56%)

Query:     3 TQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTS 62
             + +G+  L+VGYA++GA  F  +E   E      V+    K V  +W  T   N ++   
Sbjct:    26 SHIGLCALVVGYALLGAVIFKAVEGPHEAEIQELVKSAREKAVDVVWNATFRVNRLDSKQ 85

Query:    63 WQNACDETLLIYQKNLTHQVKDGYDGRTVHEI--WSFPAALMFSLSIFTMIGYGNMVPRT 120
             W+    + +  ++      ++ GYDG+   +   W+F  A ++SL++ T IGYGN   +T
Sbjct:    86 WKKTVLDEVKRFKTVCMLSIRKGYDGKEYGKQAQWTFTGAFLYSLTVITTIGYGNTAAKT 145

Query:   121 LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLY 157
              +GK  T++YA+ GIPL +L+  N+G V+A+ FR+LY
Sbjct:   146 YIGKTLTMLYAIIGIPLMLLFLTNIGDVMAKIFRFLY 182

GO:0005267 "potassium channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0035192 CG9194 [Drosophila melanogaster (taxid:7227)]

 Score = 248 (92.4 bits), Expect = 4.2e-39, Sum P(2) = 4.2e-39
 Identities = 55/166 (33%), Positives = 91/166 (54%)

Query:    10 LIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDE 69
             L+V Y V GA+ F  +E   E      +++L       +W ++    ++ ++ W     +
Sbjct:    47 LVVSYCVGGAYLFQHLERPHELEVKRDIQNLRVNLTENIWLLSDDAVVLRESDWMANASK 106

Query:    70 TLLIYQKNLTHQVK-DGYDG-RTVHEI-WSFPAALMFSLSIFTMIGYGNMVPRTLLGKAT 126
              L  ++K +   +K DG+DG   + +  W+F  +L +S+ + T IGYG++ PRT  GK T
Sbjct:   107 HLANFEKQILTAIKADGWDGDEDLRKSQWTFAGSLFYSIIVITTIGYGHISPRTDWGKVT 166

Query:   127 TVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTW---LYECTMEDRR 169
             T+ YA+ GIPL ++   N+G V+A SFR+LY W    Y CT   +R
Sbjct:   167 TIFYAIVGIPLMLICLSNIGDVMATSFRFLY-WRICCYVCTRTAKR 211

GO:0005252 "open rectifier potassium channel activity" evidence=ISS

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

WB|WBGene00006690 twk-39 [Caenorhabditis elegans (taxid:6239)]

 Score = 235 (87.8 bits), Expect = 5.0e-38, Sum P(2) = 5.0e-38
 Identities = 52/159 (32%), Positives = 89/159 (55%)

Query:     3 TQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTS 62
             T VG+  L+  YAV GAF F  +E   E     +V++ + K V  ++      N++ +T+
Sbjct:    25 THVGLCFLVALYAVAGAFMFQAVEYPYELGLQGKVKNASLKVVDDIYRFINRKNVIEETA 84

Query:    63 WQNACDETLLIYQKNLTHQVK-DGYDGRTVHEI---WSFPAALMFSLSIFTMIGYGNMVP 118
              +N     L  ++  L H +  +GYD          W+F  AL++S+++FT IGYG++ P
Sbjct:    85 VKNESQWALKEFEMLLVHAMNFEGYDEHDEERPTFQWTFSGALLYSITVFTTIGYGHICP 144

Query:   119 RTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLY 157
             +T  G+  T++Y++ GIPL +L   N+ + LAQ F ++Y
Sbjct:   145 KTDTGRLLTILYSILGIPLMLLCLANIAETLAQVFTYIY 183

GO:0005267 "potassium channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0027589 CG1688 [Drosophila melanogaster (taxid:7227)]

 Score = 205 (77.2 bits), Expect = 2.8e-32, Sum P(3) = 2.8e-32
 Identities = 43/117 (36%), Positives = 63/117 (53%)

Query:   166 EDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIG 225
             ED   E E +    VP +  L +L  Y+  GTV+FA WENW ++D  YFC  +L  IG G
Sbjct:   801 EDSEEEDEKADGRQVPISLVLLILASYICVGTVIFALWENWSLVDGAYFCFVTLSTIGYG 860

Query:   226 DFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGL 282
             DFVP  +     +G  ++L     YLLLG+ L+AM F ++   +  K + +   + L
Sbjct:   861 DFVPARSF----NGPELQLYACCAYLLLGLVLVAMSFSILETQLMWKCKRIAVRLKL 913

GO:0005267 "potassium channel activity" evidence=ISS

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

FB|FBgn0259242 CG42340 [Drosophila melanogaster (taxid:7227)]

 Score = 208 (78.3 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
 Identities = 45/135 (33%), Positives = 75/135 (55%)

Query:    31 RPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDG--YD- 87
             R ++A  E + ++TV +LW IT   NI+ K +W     + + ++Q  L   V+    Y  
Sbjct:   139 RTELANAE-IRSRTVDRLWSITEDLNILYKENWTRLAAQEVQLFQDTLLRAVRQSKVYPP 197

Query:    88 -----GRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYF 142
                      H+ W++ +A ++SL++ T IGYG + PRT  G+   +VYA+FGIP+ +LY 
Sbjct:   198 GGIQLNAPTHK-WTYASAFLYSLTLITTIGYGGISPRTQWGRVAALVYALFGIPIVLLYL 256

Query:   143 RNMGKVLAQSFRWLY 157
               MG+ L+   R L+
Sbjct:   257 SAMGEALSAGMRCLF 271

GO:0005267 "potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

FB|FBgn0260971 CG42594 [Drosophila melanogaster (taxid:7227)]

 Score = 176 (67.0 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
 Identities = 39/106 (36%), Positives = 60/106 (56%)

Query:    65 NACDETLLIYQKNLTHQVKDGYDGRTV-----HEIWSFPAALMFSLSIFTMIGYGNMVPR 119
             N   E +L++  +  H    G  G  V     HE W+F  A ++SL++ T IGYGN+ PR
Sbjct:   567 NPATEAVLLHT-HYHHHRAGGVGGVAVGGGPPHE-WNFAKAFLYSLTVLTTIGYGNVAPR 624

Query:   120 TLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTM 165
             T LG+  T+ YA FGIPL ++Y  + G +LA+  R +++    C +
Sbjct:   625 TTLGRIVTLAYAFFGIPLTLVYLSSTGSILARVAREVFSKALCCCL 670

GO:0005267 "potassium channel activity" evidence=ISS

GO:0006813 "potassium ion transport" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-120709-43 si:ch211-283f6.10 "si:ch211-283f6.10" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
 Identities = 52/173 (30%), Positives = 92/173 (53%)

Query:    95 WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154
             W F  +  F++++ T IGYG+  P T  GKA  + YA+ GIPL ++ F+++G+ +    R
Sbjct:    78 WKFSGSFYFAITVITTIGYGHAAPSTDAGKAFCMGYALLGIPLTLVMFQSLGERINTFVR 137

Query:   155 WLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYF 214
             +L     +C M  RR E  ++  +I+   +C+  L      G   F+ +E W    + Y+
Sbjct:   138 FLLHKAKKC-MGLRRPEVSMANMVIIGFFSCVSTL----CIGAAAFSHYEGWTFFHAFYY 192

Query:   215 CVTSLCKIGIGDFVP--GANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLM 265
             C  +L  IG GD+V     N L +   H++    +F+Y+L+G+ +I    +L+
Sbjct:   193 CFITLTTIGFGDYVALQKDNALQNDP-HYVAF--SFVYILMGLTVIGAFLNLV 242

GO:0005267 "potassium channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0005252 "open rectifier potassium channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

UNIPROTKB|E1BEH3 KCNK15 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 223 (83.6 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
 Identities = 58/173 (33%), Positives = 89/173 (51%)

Query:    95 WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154
             W F  +  F++++ T IGYG+  P T  GK   + YA+ GIPL ++ F+++G+ L    R
Sbjct:    92 WKFAGSFYFAITVITTIGYGHAAPGTDSGKVFCMFYALLGIPLTLVTFQSLGERLNALVR 151

Query:   155 WLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYF 214
              L      C +  RR    VSP  +  + A L V  G +A G   FA +E W    + Y+
Sbjct:   152 RLLLAAKRC-LGLRRPR--VSPENM--AVAGLLVCAGTLALGAAAFAHFEGWTFFHAYYY 206

Query:   215 CVTSLCKIGIGDFVPGAN--ILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLM 265
             C  +L  IG GDFV   N   L  K  +   +  +F+Y+LLG+ +I    +L+
Sbjct:   207 CFITLTTIGFGDFVALQNDEALQRKPPY---VAFSFLYILLGLTVIGAFLNLV 256

GO:0016021 "integral to membrane" evidence=IEA

GO:0005267 "potassium channel activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	302
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	3e-11
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	2e-04

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 58.0 bits (141), Expect = 3e-11
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query: 95  WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMG 146
           W F  AL FS    T IGYG++VP T  G+  T++Y + GIPL++L+   +G
Sbjct: 23  WDFLDALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYILIGIPLFLLFLAVLG 74

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 12/81 (14%)

Query: 188 VLGGYVATGTVMFAEWEN---WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKL 244
           +L   +  GTV ++  E    W  LD+ YF   +L  IG GD VP  +            
Sbjct: 2   LLLLVLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIVPLTDAGR--------- 52

Query: 245 IINFIYLLLGMGLIAMCFDLM 265
           +   IY+L+G+ L  +   ++
Sbjct: 53  LFTIIYILIGIPLFLLFLAVL 73

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG4404|consensus	350		100.0
KOG1418|consensus	433		100.0
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.53
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.51
KOG3713|consensus	477		99.29
KOG4404|consensus	350		99.26
PRK10537	393	voltage-gated potassium channel; Provisional	99.12
KOG3713|consensus	477		99.02
KOG1418|consensus	433		98.92
KOG1419|consensus	654		98.82
KOG0501|consensus	971		98.8
PRK10537	393	voltage-gated potassium channel; Provisional	98.77
KOG1419|consensus	654		98.76
KOG1545|consensus	507		98.69
PLN03192	823	Voltage-dependent potassium channel; Provisional	98.6
KOG1545|consensus	507		98.48
PLN03192	823	Voltage-dependent potassium channel; Provisional	98.44
KOG1420|consensus	1103		98.28
KOG1420|consensus	1103		98.13
KOG4390|consensus	632		98.1
KOG0498|consensus	727		98.06
KOG0498|consensus	727		97.97
KOG3684|consensus	489		97.93
KOG3684|consensus	489		97.9
KOG4390|consensus	632		97.67
KOG3193|consensus	1087		97.58
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	97.23
KOG0501|consensus	971		97.19
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	96.51
KOG3193|consensus	1087		95.17
KOG0500|consensus	536		95.15
KOG0500|consensus	536		93.99
PF00520	200	Ion_trans: Ion transport protein calcium channel s	92.22
KOG3827|consensus	400		91.69
PF00520	200	Ion_trans: Ion transport protein calcium channel s	91.64
TIGR00933	390	2a38 potassium uptake protein, TrkH family. The pr	90.93
TIGR00933	390	2a38 potassium uptake protein, TrkH family. The pr	90.87
COG0168	499	TrkG Trk-type K+ transport systems, membrane compo	87.34
KOG3827|consensus	400		85.12
PRK10750	483	potassium transporter; Provisional	82.38
PF02386	354	TrkH: Cation transport protein; InterPro: IPR00344	81.25

>KOG4404|consensus

Probab=100.00  E-value=6.2e-52  Score=374.71  Aligned_cols=243  Identities=23%  Similarity=0.389  Sum_probs=193.0

Q ss_pred             chhHHHHHHHHHHHHHHHhHHHhhcCCchhhHHHHHHHHHHHHHHHHhhhhhccccCccchhhhHHHHHHHHHHHHHHHH
Q psy12868          3 TQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQV   82 (302)
Q Consensus         3 ~h~~l~~llv~Y~~~GA~iF~~lE~~~e~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~   82 (302)
                      +-+.|+++.+.|+++||.+|.+||+++|...++++++.+++       ...++|..+         +.+++++..+.++.
T Consensus         8 R~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~-------~~~kyn~s~---------~d~r~~er~i~~s~   71 (350)
T KOG4404|consen    8 RTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLAN-------LKRKYNLSE---------EDYRELERVILKSE   71 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-------HHHhhCCCH---------HHHHHHHHHHHhcC
Confidence            34678999999999999999999999999887666655544       344666443         33444444444332


Q ss_pred             HcCCCCCCCccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q psy12868         83 KDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYE  162 (302)
Q Consensus        83 ~~~~~~~~~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~~~~~~~~~  162 (302)
                      .     ....++|+|++||||+.|++||||||+.+|.|.+||+|||+|+++|||+.+++++++|+.+....+++.++.++
T Consensus        72 p-----h~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~  146 (350)
T KOG4404|consen   72 P-----HKAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRR  146 (350)
T ss_pred             c-----cccccccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1     24567899999999999999999999999999999999999999999999999999999999999988888877


Q ss_pred             hcccCcCCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcch
Q psy12868        163 CTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHI  242 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~  242 (302)
                      +..+++.+..  ..   -.+.+.+..-++.++.||++|+..|+|+|+||+||||||+|||||||+|+..+.+. .+.++.
T Consensus       147 ~~~~r~~~~S--~~---~l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~a-lq~qpl  220 (350)
T KOG4404|consen  147 RLGRRRWDVS--VY---NLVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAA-LQSQPL  220 (350)
T ss_pred             HhccccCCCc--HH---HHHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhh-hhCCCc
Confidence            6665532211  00   01112223344567899999999999999999999999999999999999987442 345689


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        243 KLIINFIYLLLGMGLIAMCFDLMREDVRVK  272 (302)
Q Consensus       243 ~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~  272 (302)
                      |+.+.++||++|++.++.++|++.-.+..-
T Consensus       221 Yv~~sf~fIL~Gl~vi~a~~NllvLrf~t~  250 (350)
T KOG4404|consen  221 YVFFSFVFILLGLCVIYALLNLLVLRFMTM  250 (350)
T ss_pred             eehHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999987655433

>KOG1418|consensus

Probab=100.00  E-value=3e-40  Score=316.63  Aligned_cols=261  Identities=27%  Similarity=0.401  Sum_probs=179.1

Q ss_pred             CchhHHHHHHHHHHHHHHHhHHHhhcCCchhh-HHHHHHHHHHHHHHHHhhhhhccccCccchhhhHHHHHHHHHHHHH-
Q psy12868          2 CTQVGVGGLIVGYAVVGAFSFSWIETKEERPQ-IARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLT-   79 (302)
Q Consensus         2 ~~h~~l~~llv~Y~~~GA~iF~~lE~~~e~~~-~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-   79 (302)
                      ..|+.++.+++.|++.||.+|+.+|.++|.+. .......+.+..++.+....+........+.   ....+.+..... 
T Consensus        17 ~~~~~l~~~~~~y~~~ga~~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~   93 (433)
T KOG1418|consen   17 IRHVLLLLLVLLYLVLGAFIFQALERPKELELKQRELGLLLSNFILRIWRCIDELVLEEESRTK---AHKQKASVLLALL   93 (433)
T ss_pred             cchhhHHHHHHHHHhhHHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence            57889999999999999999999999999888 4544444444444433221111100000000   000001111000 


Q ss_pred             HHHHc-----CCCCCCCccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHH
Q psy12868         80 HQVKD-----GYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR  154 (302)
Q Consensus        80 ~~~~~-----~~~~~~~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~  154 (302)
                      .....     +.........|+|++|+|||+|++|||||||++|.|.+||++||+|+++|||+++++++++|++++..++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~  173 (433)
T KOG1418|consen   94 LGVANSALSLEGDESPDTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR  173 (433)
T ss_pred             hhcchhhcccccccCCCCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            00000     1112234567999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHH---Hhhhc---ccCcC-------CCCCCCCe---eeeehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeee
Q psy12868        155 WLYTW---LYECT---MEDRR-------SEGEVSPR---IIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTS  218 (302)
Q Consensus       155 ~~~~~---~~~~~---~~~~~-------~~~~~~~~---~~~~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fit  218 (302)
                      .++++   ..+..   .....       +.......   ...+....+.++++|+..|+.++..+|+|+|++|+||+|+|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fis  253 (433)
T KOG1418|consen  174 KLYRRRHVELQRDRIRSNLRRSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFIS  253 (433)
T ss_pred             HHHHHhhhhhhhhhhhhhhhccccchhcccccchhhccCcceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEE
Confidence            87752   11110   00000       00001111   24566666677788899999999999999999999999999


Q ss_pred             eecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy12868        219 LCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMR  266 (302)
Q Consensus       219 ltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~  266 (302)
                      +|||||||++|.+..+... ....+......++++|++.++++.....
T Consensus       254 ltTIG~GD~vp~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~  300 (433)
T KOG1418|consen  254 LTTIGFGDIVPRTLLGRFR-REELVDPLASVWILSGLALLALVLLGPD  300 (433)
T ss_pred             eeeecCCccccCCCcceee-ccccccchhHHHHHhhhhHHHHHhhccc
Confidence            9999999999998765210 1112346778999999999999985433

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.53  E-value=3.7e-15  Score=111.75  Aligned_cols=73  Identities=29%  Similarity=0.562  Sum_probs=59.6

Q ss_pred             HHHHHhhhhhhhhc---cccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy12868        189 LGGYVATGTVMFAE---WENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLM  265 (302)
Q Consensus       189 ~~~~~~iga~if~~---~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i  265 (302)
                      ++.++..|++.+..   .|+|++.||+||+++|+|||||||++|.++.+         ++++.+++++|+.++++.++.+
T Consensus         3 ~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~g---------r~~~~~~~~~G~~~~~~~~~~~   73 (79)
T PF07885_consen    3 LLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAG---------RIFTIIYMLIGIFLFALFLSVL   73 (79)
T ss_dssp             HHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccch---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            34456667777766   68899999999999999999999999997654         5899999999999999999998


Q ss_pred             HHHHH
Q psy12868        266 REDVR  270 (302)
Q Consensus       266 ~~~~~  270 (302)
                      .+.+.
T Consensus        74 ~~~l~   78 (79)
T PF07885_consen   74 ASVLT   78 (79)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            87764

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.51  E-value=8.6e-15  Score=109.73  Aligned_cols=59  Identities=41%  Similarity=0.801  Sum_probs=53.0

Q ss_pred             ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHH
Q psy12868         92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLA  150 (302)
Q Consensus        92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~  150 (302)
                      .+.|++.+|+||+++++|||||||+.|.|+.||+++++++++|++++.+.++.+++.+.
T Consensus        20 ~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~   78 (79)
T PF07885_consen   20 SEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT   78 (79)
T ss_dssp             SSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45899999999999999999999999999999999999999999999999999988765

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>KOG3713|consensus

Probab=99.29  E-value=7.5e-12  Score=120.40  Aligned_cols=97  Identities=25%  Similarity=0.372  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCchhhHHHHHHHHHHHHHHHHhhhhhccccCccchhhhHHHHHHHHHHHHHHHHHcCCC
Q psy12868          8 GGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDGYD   87 (302)
Q Consensus         8 ~~llv~Y~~~GA~iF~~lE~~~e~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~   87 (302)
                      +++|++|++.|-.+|.++.+-.|+..                                                      
T Consensus       345 lglLllfL~~GI~iFStlvY~~Ek~~------------------------------------------------------  370 (477)
T KOG3713|consen  345 LGLLLLFLAVGIVIFSTLVYFAEKDE------------------------------------------------------  370 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcC------------------------------------------------------
Confidence            57889999999999999986655422                                                      


Q ss_pred             CCCCccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12868         88 GRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWL  160 (302)
Q Consensus        88 ~~~~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~~~~~~~  160 (302)
                        ...+.-|.+-++|||.+|||||||||++|+|..||++...-++.||-++++.++.+-+.+++.+.....+-
T Consensus       371 --~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~  441 (477)
T KOG3713|consen  371 --PDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKARE  441 (477)
T ss_pred             --CCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHH
Confidence              01124678899999999999999999999999999999999999999999999999999999887765443

>KOG4404|consensus

Probab=99.26  E-value=1.6e-11  Score=112.38  Aligned_cols=94  Identities=21%  Similarity=0.357  Sum_probs=80.5

Q ss_pred             eehhhHHHHHHHHHhhhhhhhhccc----------------------------------------------cCCccccee
Q psy12868        180 VPSTACLWVLGGYVATGTVMFAEWE----------------------------------------------NWPILDSCY  213 (302)
Q Consensus       180 ~~~~~~l~~~~~~~~iga~if~~~e----------------------------------------------~w~~~da~Y  213 (302)
                      +...+..++.+.|+++||++|..+|                                              +|+|.-|||
T Consensus         7 vR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaFY   86 (350)
T KOG4404|consen    7 VRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAFY   86 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcceE
Confidence            3444556778899999999999887                                              199999999


Q ss_pred             eeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12868        214 FCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGL  282 (302)
Q Consensus       214 f~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~~~~~~~~~~~  282 (302)
                      |+.+.+||||||.-.|.++.|+         +|+++|.++|+++.-..|+.+.|++...++.+-++.++
T Consensus        87 Fa~TVItTIGyGhstP~T~~GK---------~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~  146 (350)
T KOG4404|consen   87 FATTVITTIGYGHSTPSTDGGK---------AFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRR  146 (350)
T ss_pred             EEEEEEeeeccCCCCCCCcCce---------ehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999985         99999999999999999999999998666555444433

>PRK10537 voltage-gated potassium channel; Provisional

Probab=99.12  E-value=1e-10  Score=112.75  Aligned_cols=80  Identities=18%  Similarity=0.301  Sum_probs=57.8

Q ss_pred             CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhh
Q psy12868        206 WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMRED-VRVKVRNLKTDIGLCF  284 (302)
Q Consensus       206 w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~-~~~~~~~~~~~~~~~~  284 (302)
                      +++.||+||+++|+||+||||++|.+..|         ++++.+++++|++++++.++.+..- +..++++..++.... 
T Consensus       167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~g---------rl~~i~~ii~Gi~vf~~~is~i~~p~i~~~l~~~~~~~~~~-  236 (393)
T PRK10537        167 ESLSTAFYFSIVTMSTVGYGDIVPVSESA---------RLFTISVIILGITVFATSISAIFGPVIRGNLKRLVKGRISH-  236 (393)
T ss_pred             CCHHHHHHhhheeeecccCCCCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-
Confidence            79999999999999999999999997755         5899999999999998888765442 333333332222111 


Q ss_pred             hhccchhhccc
Q psy12868        285 EVIRLRAIACY  295 (302)
Q Consensus       285 ~~~~~~~i~~~  295 (302)
                      ...++|++.|-
T Consensus       237 ~~~k~HvII~G  247 (393)
T PRK10537        237 MHRKDHFIICG  247 (393)
T ss_pred             cccCCeEEEEC
Confidence            12257777764

>KOG3713|consensus

Probab=99.02  E-value=5.8e-10  Score=107.52  Aligned_cols=83  Identities=22%  Similarity=0.423  Sum_probs=64.5

Q ss_pred             HHHHHHhhhhhhhhcc----cc-------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHH
Q psy12868        188 VLGGYVATGTVMFAEW----EN-------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMG  256 (302)
Q Consensus       188 ~~~~~~~iga~if~~~----e~-------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~  256 (302)
                      ++++|+++|.++|+.+    |.       -|..-++|||.||+|||||||++|.|..|+         ++....++.|+.
T Consensus       347 lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gk---------lvas~cil~GVL  417 (477)
T KOG3713|consen  347 LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGK---------LVASLCILCGVL  417 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchH---------HHHHHHHHHhHH
Confidence            4445555555555433    41       245778999999999999999999998884         888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        257 LIAMCFDLMREDVRVKVRNLKTD  279 (302)
Q Consensus       257 l~~~~~~~i~~~~~~~~~~~~~~  279 (302)
                      ++++.+..|-+++.+..++.+++
T Consensus       418 vlAlPItiIv~nF~~~y~~~k~~  440 (477)
T KOG3713|consen  418 VLALPITIIVNNFSMYYSELKAR  440 (477)
T ss_pred             HhhcchHhHhhhHHHHHHHHHHH
Confidence            99999999999887666655544

>KOG1418|consensus

Probab=98.92  E-value=1.4e-09  Score=104.20  Aligned_cols=65  Identities=20%  Similarity=0.464  Sum_probs=57.2

Q ss_pred             ccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        204 ENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLK  277 (302)
Q Consensus       204 e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~~~~~~  277 (302)
                      +.|+|.+|+|||++++|||||||++|.+..|         ++++++|.++|++++.++++-+.+.+....++..
T Consensus       112 ~~W~f~~al~fs~tv~TTIGYG~i~P~T~~G---------r~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~  176 (433)
T KOG1418|consen  112 QQWSFSSALLFSITVITTIGYGNIAPRTDAG---------RLFTILYALVGIPLMLLILADIGKFLADSLRKLY  176 (433)
T ss_pred             cceecchhHhhhhheeeeccCCcccCCcCcc---------hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999999999999888         4999999999999999999988877765555433

>KOG1419|consensus

Probab=98.82  E-value=3.3e-09  Score=103.13  Aligned_cols=62  Identities=27%  Similarity=0.519  Sum_probs=56.9

Q ss_pred             CccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868         91 VHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS  152 (302)
Q Consensus        91 ~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~  152 (302)
                      ..+.-+|++|+||..+|+|||||||.+|+|..||+++..++++||..+.+.-+.+|.-++-.
T Consensus       264 n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALK  325 (654)
T KOG1419|consen  264 NDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALK  325 (654)
T ss_pred             cccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhh
Confidence            34567899999999999999999999999999999999999999999999999999877643

>KOG0501|consensus

Probab=98.80  E-value=7.9e-09  Score=101.09  Aligned_cols=112  Identities=17%  Similarity=0.271  Sum_probs=90.4

Q ss_pred             HHHHHHHHHhhhhhccccCccchhhhHHHHHHHHHHHHHHHHHcCCCC-----CCCccCCChhhhhHhhheeEEeeecce
Q psy12868         41 TNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDGYDG-----RTVHEIWSFPAALMFSLSIFTMIGYGN  115 (302)
Q Consensus        41 r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-----~~~~~~w~~~~a~~f~~t~~tTiGyG~  115 (302)
                      -..++.++|-...++++.++.+-....+.+|-+....+...+..+.++     ..|+..--|.+|+||.+|.+|||||||
T Consensus       363 vAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGN  442 (971)
T KOG0501|consen  363 VAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGN  442 (971)
T ss_pred             HHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhcccccc
Confidence            457888999777777888887777788888888777776655443221     124555669999999999999999999


Q ss_pred             eccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868        116 MVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS  152 (302)
Q Consensus       116 i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~  152 (302)
                      ++|.|+.-|+|.+...++|--|+...++.+...+.++
T Consensus       443 iA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM  479 (971)
T KOG0501|consen  443 IAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQM  479 (971)
T ss_pred             cCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            9999999999999999999999999988887766554

>PRK10537 voltage-gated potassium channel; Provisional

Probab=98.77  E-value=1.4e-08  Score=97.99  Aligned_cols=56  Identities=23%  Similarity=0.435  Sum_probs=51.5

Q ss_pred             cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHH
Q psy12868         93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKV  148 (302)
Q Consensus        93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~  148 (302)
                      ..|++.+|+||+++++||+||||+.|.|+.||+|++++.++|+.+++..++.+...
T Consensus       165 ~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p  220 (393)
T PRK10537        165 PIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGP  220 (393)
T ss_pred             CCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999999999999999999999998888766543

>KOG1419|consensus

Probab=98.76  E-value=6.4e-09  Score=101.18  Aligned_cols=61  Identities=21%  Similarity=0.373  Sum_probs=53.7

Q ss_pred             CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        206 WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRN  275 (302)
Q Consensus       206 w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~~~~  275 (302)
                      -+|.||+||..||+|||||||.+|.+-.|         ++++.++.++|++.++..-+.++..+..+.++
T Consensus       268 ~TyADALWWG~ITltTIGYGDk~P~TWlG---------r~laa~fsligiSFFALPAGILGSGfALKVQe  328 (654)
T KOG1419|consen  268 PTYADALWWGVITLTTIGYGDKTPQTWLG---------RLLAACFSLIGISFFALPAGILGSGFALKVQE  328 (654)
T ss_pred             hhHHHHHHhhheeEEeeccCCcCcccchh---------HHHHHHHHHHHHHHHhcccccccchhhhhhHH
Confidence            48999999999999999999999999877         48888999999999999999888877655444

>KOG1545|consensus

Probab=98.69  E-value=1.3e-08  Score=94.75  Aligned_cols=53  Identities=30%  Similarity=0.486  Sum_probs=45.4

Q ss_pred             cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHh
Q psy12868         93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNM  145 (302)
Q Consensus        93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~  145 (302)
                      ..-+.++|+||+.+++|||||||++|.|.+||+...+.|+.|+--..+.+-.+
T Consensus       390 ~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVI  442 (507)
T KOG1545|consen  390 HFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVI  442 (507)
T ss_pred             CCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEE
Confidence            34678999999999999999999999999999999999999986555544333

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=98.60  E-value=4.4e-08  Score=103.06  Aligned_cols=56  Identities=20%  Similarity=0.475  Sum_probs=52.7

Q ss_pred             hhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868         97 FPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS  152 (302)
Q Consensus        97 ~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~  152 (302)
                      |..|+||+++|+|||||||++|.|+.+|+|++++.++|+.++...++++++.+...
T Consensus       251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~  306 (823)
T PLN03192        251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEG  306 (823)
T ss_pred             HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66699999999999999999999999999999999999999999999999987654

>KOG1545|consensus

Probab=98.48  E-value=1.4e-07  Score=87.86  Aligned_cols=56  Identities=21%  Similarity=0.355  Sum_probs=46.9

Q ss_pred             CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        206 WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR  270 (302)
Q Consensus       206 w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~  270 (302)
                      -+..|||||+++|+|||||||.+|.+..|+         ++..+..+.|+.-++...-.+.+.+.
T Consensus       392 ~SIPdaFWwavVTMTTVGYGDm~P~TvgGK---------IVGslCAiaGVLTiALPVPVIVsNFn  447 (507)
T KOG1545|consen  392 SSIPDAFWWAVVTMTTVGYGDMVPVTVGGK---------IVGSLCAIAGVLTIALPVPVIVSNFN  447 (507)
T ss_pred             CcCcccceEEEEEEEeeccccceecccCce---------ehhhHHhhhhheEecccccEEEeccc
Confidence            367999999999999999999999999885         77778888888777777766665554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=98.44  E-value=2.5e-07  Score=97.43  Aligned_cols=54  Identities=26%  Similarity=0.496  Sum_probs=47.1

Q ss_pred             cccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        208 ILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR  270 (302)
Q Consensus       208 ~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~  270 (302)
                      |..|+||+++|+|||||||++|.+..+         ++++++++++|++++++.++.+.+-+.
T Consensus       251 Yi~slYwai~TmtTVGYGDi~p~t~~E---------~i~~i~~ml~g~~~~a~~ig~i~~li~  304 (823)
T PLN03192        251 YISAIYWSITTMTTVGYGDLHAVNTIE---------MIFIIFYMLFNLGLTAYLIGNMTNLVV  304 (823)
T ss_pred             HHHHHHHHHHHHhhccCCCcCCCccch---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344899999999999999999998765         589999999999999999998876543

>KOG1420|consensus

Probab=98.28  E-value=7.5e-07  Score=87.38  Aligned_cols=70  Identities=17%  Similarity=0.277  Sum_probs=54.8

Q ss_pred             HHHhhhhhhhhcccc-------------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHH
Q psy12868        191 GYVATGTVMFAEWEN-------------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGL  257 (302)
Q Consensus       191 ~~~~iga~if~~~e~-------------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l  257 (302)
                      ...+-+|.+.+.+|+             .+|.|+.||..+|++||||||+.-.+..|         +.|..++++.|+++
T Consensus       259 svwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lg---------rlfmvffil~glam  329 (1103)
T KOG1420|consen  259 SVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLG---------RLFMVFFILGGLAM  329 (1103)
T ss_pred             HHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhh---------HHHHHHHHHHHHHH
Confidence            334456666666663             47899999999999999999999998776         58899999999998


Q ss_pred             HHHHHHHHHHHH
Q psy12868        258 IAMCFDLMREDV  269 (302)
Q Consensus       258 ~~~~~~~i~~~~  269 (302)
                      ++.-+--+.+-+
T Consensus       330 fasyvpeiieli  341 (1103)
T KOG1420|consen  330 FASYVPEIIELI  341 (1103)
T ss_pred             HHhhhHHHHHHH
Confidence            876655554433

>KOG1420|consensus

Probab=98.13  E-value=1.4e-06  Score=85.51  Aligned_cols=58  Identities=17%  Similarity=0.457  Sum_probs=51.4

Q ss_pred             ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHH
Q psy12868         92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL  149 (302)
Q Consensus        92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l  149 (302)
                      ...-+|++++||-+++++|+||||+++.|..||+|.++|.+.|.+++.-.+-.+.+.+
T Consensus       284 ~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiieli  341 (1103)
T KOG1420|consen  284 NHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELI  341 (1103)
T ss_pred             cccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3457899999999999999999999999999999999999999999887776665544

>KOG4390|consensus

Probab=98.10  E-value=2.5e-07  Score=87.02  Aligned_cols=65  Identities=25%  Similarity=0.476  Sum_probs=54.7

Q ss_pred             CCccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHH
Q psy12868         90 TVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR  154 (302)
Q Consensus        90 ~~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~  154 (302)
                      +....-+.+.|+||.++++||.||||++|.|.+||+|..+..+.|+-...+.+-.+..-+++++.
T Consensus       350 ~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYH  414 (632)
T KOG4390|consen  350 SATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYH  414 (632)
T ss_pred             cccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHh
Confidence            34556789999999999999999999999999999999999999987777776666666666543

>KOG0498|consensus

Probab=98.06  E-value=4.2e-06  Score=85.77  Aligned_cols=59  Identities=24%  Similarity=0.429  Sum_probs=55.0

Q ss_pred             ChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHH
Q psy12868         96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR  154 (302)
Q Consensus        96 ~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~  154 (302)
                      -|.-|+||+++++||+|||+.+|.+..-++|+|+|+++|.-+++++++++...+.+...
T Consensus       294 kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ts  352 (727)
T KOG0498|consen  294 KYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTS  352 (727)
T ss_pred             HHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhH
Confidence            37889999999999999999999999999999999999999999999999988876543

>KOG0498|consensus

Probab=97.97  E-value=2.3e-06  Score=87.66  Aligned_cols=56  Identities=18%  Similarity=0.263  Sum_probs=48.2

Q ss_pred             cccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        208 ILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVK  272 (302)
Q Consensus       208 ~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~  272 (302)
                      |.-|+||++.|+||+||||..|.+..         -.+|+++++++|+.+.|++|+-++.-++..
T Consensus       295 Y~~aLyw~l~tLstvG~g~~~s~~~~---------E~iFsi~~mi~GllL~A~lIGNmt~~iqs~  350 (727)
T KOG0498|consen  295 YVYALYWGLSTLSTVGYGLVHANNMG---------EKIFSIFIMLFGLLLFAYLIGNMTALLQSL  350 (727)
T ss_pred             HHHHHHHHhhHhhhccCCccCCCCcH---------HHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence            45689999999999999999988653         269999999999999999999988766543

>KOG3684|consensus

Probab=97.93  E-value=1.2e-05  Score=77.35  Aligned_cols=82  Identities=18%  Similarity=0.279  Sum_probs=67.8

Q ss_pred             eehhhHHHHHHHHHhhhhhhhhcccc--------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHH
Q psy12868        180 VPSTACLWVLGGYVATGTVMFAEWEN--------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYL  251 (302)
Q Consensus       180 ~~~~~~l~~~~~~~~iga~if~~~e~--------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~i  251 (302)
                      .|.+..+...+.+.++.+.++..-|-        -.+.++.|+..+|+-+|||||+||++.-|+         .++++--
T Consensus       252 ~Pg~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr---------~v~l~tG  322 (489)
T KOG3684|consen  252 CPGTVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGR---------GVALLTG  322 (489)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccc---------hHHHHhh
Confidence            35566666677777888888876662        358999999999999999999999998884         7778888


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy12868        252 LLGMGLIAMCFDLMREDVR  270 (302)
Q Consensus       252 l~Gl~l~~~~~~~i~~~~~  270 (302)
                      ++|.+..|+++..++++++
T Consensus       323 ivGa~~sallvAvisRKLe  341 (489)
T KOG3684|consen  323 IVGAGCSSLLVAVIARKLE  341 (489)
T ss_pred             hhhhhHHHHHHHHHHHHHH
Confidence            8999999999999988775

>KOG3684|consensus

Probab=97.90  E-value=1.7e-05  Score=76.26  Aligned_cols=54  Identities=22%  Similarity=0.458  Sum_probs=49.5

Q ss_pred             ChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHH
Q psy12868         96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL  149 (302)
Q Consensus        96 ~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l  149 (302)
                      +|.++.|+-.+|+-+|||||++|.|-.||..|++=+++|--...++++.+..-+
T Consensus       287 ~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL  340 (489)
T KOG3684|consen  287 NYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL  340 (489)
T ss_pred             HHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999998887754

>KOG4390|consensus

Probab=97.67  E-value=5.2e-06  Score=78.32  Aligned_cols=54  Identities=22%  Similarity=0.407  Sum_probs=43.5

Q ss_pred             CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDV  269 (302)
Q Consensus       207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~  269 (302)
                      +..-||||+.+|+||.||||.||.+-.|+         +|..+.-+-|+.+++...-.+.+.+
T Consensus       356 sIPaaFWYTIVTmTTLGYGDMVp~TIaGK---------IfGsiCSLSGVLVIALPVPvIVSNF  409 (632)
T KOG4390|consen  356 SIPAAFWYTIVTMTTLGYGDMVPSTIAGK---------IFGSICSLSGVLVIALPVPVIVSNF  409 (632)
T ss_pred             cCcHhHhhheeeeeeccccccchHHHHHH---------HhhhhhcccceEEEeccccEEEech
Confidence            45788999999999999999999998874         8888888888877776665544333

>KOG3193|consensus

Probab=97.58  E-value=0.00012  Score=71.80  Aligned_cols=28  Identities=25%  Similarity=0.568  Sum_probs=25.4

Q ss_pred             CCcccceeeeeeeeecccccccccCCCc
Q psy12868        206 WPILDSCYFCVTSLCKIGIGDFVPGANI  233 (302)
Q Consensus       206 w~~~da~Yf~fitltTIGfGDivp~~~~  233 (302)
                      .+.+.++||.++|++||||||.+|.--.
T Consensus       216 i~lf~s~y~v~vtfstvgygd~~pd~w~  243 (1087)
T KOG3193|consen  216 IDLFTSFYFVMVTFSTVGYGDWYPDYWA  243 (1087)
T ss_pred             eeeeeeEEEEEEEEeeccccccccccch
Confidence            6889999999999999999999998543

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.23  E-value=0.00011  Score=69.69  Aligned_cols=52  Identities=25%  Similarity=0.336  Sum_probs=42.1

Q ss_pred             CChhhhhHhhheeEEeeecce--eccCCccchhhHHHHHHHhHHHHHHHHHHhh
Q psy12868         95 WSFPAALMFSLSIFTMIGYGN--MVPRTLLGKATTVVYAVFGIPLYVLYFRNMG  146 (302)
Q Consensus        95 w~~~~a~~f~~t~~tTiGyG~--i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g  146 (302)
                      =+|.+|++|+..|+||||||.  +.|..+.+-++.++=+++|+-+..++++.+-
T Consensus        83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvf  136 (336)
T PF01007_consen   83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVF  136 (336)
T ss_dssp             TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999  6789999999999999999988877775543

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG0501|consensus

Probab=97.19  E-value=0.00039  Score=68.92  Aligned_cols=55  Identities=22%  Similarity=0.447  Sum_probs=46.8

Q ss_pred             CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR  270 (302)
Q Consensus       207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~  270 (302)
                      -|..|+||+..++||||||.+.|.++.-         .+|..+.+++|-.+-+..|+-+..-++
T Consensus       423 ~YissLYfTMt~mttvGFGNiA~~TD~E---------KiF~v~mMii~aLLYAtIFG~vTTI~Q  477 (971)
T KOG0501|consen  423 AYISSLYFTMTCMTTVGFGNIAPNTDNE---------KIFGVCMMIIGALLYATIFGHVTTIIQ  477 (971)
T ss_pred             eehhhhhhhhhhhhcccccccCCCccHH---------HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4788999999999999999999998754         489999999999888888887665554

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=96.51  E-value=0.0026  Score=60.39  Aligned_cols=58  Identities=21%  Similarity=0.244  Sum_probs=40.3

Q ss_pred             CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRV  271 (302)
Q Consensus       207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~  271 (302)
                      +|.+||+|+.-|.||||||...|...       -+...++..+=.++|+.+.+.+.+++-.++.+
T Consensus        84 ~f~~aF~FSveT~tTIGYG~~~~~~~-------c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr  141 (336)
T PF01007_consen   84 SFTSAFLFSVETQTTIGYGSRYPTPE-------CPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR  141 (336)
T ss_dssp             THHHHHHHHHHHHTT---SSSEB-CS-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             chhhheeEEEEEEEEeccCCcccCCC-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            79999999999999999999543321       12234556678889999999888887766643

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG3193|consensus

Probab=95.17  E-value=0.016  Score=57.40  Aligned_cols=57  Identities=16%  Similarity=0.349  Sum_probs=45.0

Q ss_pred             ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHH
Q psy12868         92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKV  148 (302)
Q Consensus        92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~  148 (302)
                      ...-+...++||.+++++|+||||.+|.-.+.++..++.+.+...+..--+..+|+.
T Consensus       213 ~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~t  269 (1087)
T KOG3193|consen  213 GKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQT  269 (1087)
T ss_pred             CceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHH
Confidence            456889999999999999999999999999999988776665555554445555544

>KOG0500|consensus

Probab=95.15  E-value=0.042  Score=53.89  Aligned_cols=75  Identities=17%  Similarity=0.217  Sum_probs=49.1

Q ss_pred             cceeeeeeeeecccccccc-cCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q psy12868        210 DSCYFCVTSLCKIGIGDFV-PGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMRED----------VRVKVRNLKT  278 (302)
Q Consensus       210 da~Yf~fitltTIGfGDiv-p~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~----------~~~~~~~~~~  278 (302)
                      -|+|||..|+||||  |-. |.++.        .+ .|.++=.++|+.++|..++-+++.          ++.++...|.
T Consensus       186 ~S~YWStLTlTTiG--e~P~P~t~~--------ey-~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~  254 (536)
T KOG0500|consen  186 YSLYWSTLTLTTIG--EQPPPVTSS--------EY-AFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQ  254 (536)
T ss_pred             HHHHHHhhhhhhcc--CCCCCCcCc--------hh-hHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHH
Confidence            38999999999998  432 22221        12 667778889999988887765543          3444444443


Q ss_pred             H--hhhhhhhccchhhccc
Q psy12868        279 D--IGLCFEVIRLRAIACY  295 (302)
Q Consensus       279 ~--~~~~~~~~~~~~i~~~  295 (302)
                      .  .++.-+.++.+++.||
T Consensus       255 YM~~RkV~~~lq~rVikwf  273 (536)
T KOG0500|consen  255 YMRYRKVPKALQTRVIKWF  273 (536)
T ss_pred             HHHHhcccHHHHHHHHHHH
Confidence            2  3444466778888887

>KOG0500|consensus

Probab=93.99  E-value=0.047  Score=53.56  Aligned_cols=54  Identities=22%  Similarity=0.301  Sum_probs=50.1

Q ss_pred             hhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868         98 PAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS  152 (302)
Q Consensus        98 ~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~  152 (302)
                      .-|+|||.-|+|||| --..|.|..--+|.|+=-++|+-+++..++++|+.++.+
T Consensus       185 ~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm  238 (536)
T KOG0500|consen  185 LYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM  238 (536)
T ss_pred             HHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence            469999999999999 678899999999999999999999999999999998765

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=92.22  E-value=0.075  Score=44.75  Aligned_cols=49  Identities=20%  Similarity=0.315  Sum_probs=38.8

Q ss_pred             CChhhhhHhhheeEEeeecceeccC-----CccchhhHHHHHHHhH-HHHHHHHH
Q psy12868         95 WSFPAALMFSLSIFTMIGYGNMVPR-----TLLGKATTVVYAVFGI-PLYVLYFR  143 (302)
Q Consensus        95 w~~~~a~~f~~t~~tTiGyG~i~P~-----T~~gr~~~i~y~~~Gi-pl~~~~l~  143 (302)
                      =++..|+++.+.++||.|+|++.|.     +..+.++.+.|.+++. -++.+.++
T Consensus       144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nllia  198 (200)
T PF00520_consen  144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIA  198 (200)
T ss_dssp             SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHh
Confidence            4689999999999999999999998     8889998866666554 44444443

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG3827|consensus

Probab=91.69  E-value=0.19  Score=48.00  Aligned_cols=50  Identities=24%  Similarity=0.348  Sum_probs=37.2

Q ss_pred             CChhhhhHhhheeEEeeecceeccCC--ccchhhHHHHHHHhHHHHHHHHHH
Q psy12868         95 WSFPAALMFSLSIFTMIGYGNMVPRT--LLGKATTVVYAVFGIPLYVLYFRN  144 (302)
Q Consensus        95 w~~~~a~~f~~t~~tTiGyG~i~P~T--~~gr~~~i~y~~~Gipl~~~~l~~  144 (302)
                      -+|.+||.|++-|-||||||.-.+..  +.+=+..++=+++|.-+-..+++.
T Consensus       111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~  162 (400)
T KOG3827|consen  111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGA  162 (400)
T ss_pred             cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999877654  445555666667777666665543

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=91.64  E-value=0.14  Score=43.00  Aligned_cols=55  Identities=15%  Similarity=0.315  Sum_probs=36.6

Q ss_pred             CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHH-HHHHHHHHHHHHHHHHHH
Q psy12868        207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIIN-FIYLLLGMGLIAMCFDLM  265 (302)
Q Consensus       207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~-~~~il~Gl~l~~~~~~~i  265 (302)
                      ++..|+|+.+.++||.|+||..|.....    .+....++. ...++.++.++++++..+
T Consensus       145 ~~~~s~~~~~~~~t~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~l~nlliavi  200 (200)
T PF00520_consen  145 SFGESLYWLFQTMTGEGWGDVMPSCMSA----RSWLAVIFFISFIIIVSILLLNLLIAVI  200 (200)
T ss_dssp             SHHHHHHHHHHHHTTTTCCCCHHHHHHT----TSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCccccccccccc----cchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence            6889999999999999999999973100    011223333 455556667777766543

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>TIGR00933 2a38 potassium uptake protein, TrkH family

Probab=90.93  E-value=0.099  Score=50.59  Aligned_cols=40  Identities=10%  Similarity=0.169  Sum_probs=31.4

Q ss_pred             CChhhhhHhhheeEEeeeccee--ccCCccchhhHHHHHHHh
Q psy12868         95 WSFPAALMFSLSIFTMIGYGNM--VPRTLLGKATTVVYAVFG  134 (302)
Q Consensus        95 w~~~~a~~f~~t~~tTiGyG~i--~P~T~~gr~~~i~y~~~G  134 (302)
                      ....++.|+..++++|-||...  .--++.++++.++..++|
T Consensus       230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIG  271 (390)
T TIGR00933       230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIG  271 (390)
T ss_pred             HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHc
Confidence            4578999999999999998743  344667788888777777

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.

>TIGR00933 2a38 potassium uptake protein, TrkH family

Probab=90.87  E-value=0.29  Score=47.42  Aligned_cols=128  Identities=16%  Similarity=0.126  Sum_probs=63.3

Q ss_pred             CCChhhhhHhhheeEEeeecceecc---CCccchhhHHHHHHH---hHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhccc
Q psy12868         94 IWSFPAALMFSLSIFTMIGYGNMVP---RTLLGKATTVVYAVF---GIPLYVLYFRN-MGKVLAQSFRWLYTWLYECTME  166 (302)
Q Consensus        94 ~w~~~~a~~f~~t~~tTiGyG~i~P---~T~~gr~~~i~y~~~---Gipl~~~~l~~-~g~~l~~~~~~~~~~~~~~~~~  166 (302)
                      ..+|.||+|-+++-+||-|.=-+.|   .++.|++.-.+-.-+   |++.....+-. +|..+....     ++......
T Consensus        13 ~~s~~dA~FeavSa~ttTGltv~~~~~~~~~~~~~~r~~l~~iGGlG~~v~~~~~l~~~g~~~~~~~-----~l~~~e~~   87 (390)
T TIGR00933        13 PLSFIDALFTATSAVTTTGLTVLDTLESLPKAGLFLRSLLQQIGGLGFMVLAVAILILLGKKISLGA-----RLYLAEAL   87 (390)
T ss_pred             CCCHHHHHHhhHhhcccCCCeEccChhhcCHhHHHHHHHHHHHcChHHHHHHHHHHHHHccccCHHH-----HHHHHHhC
Confidence            4689999999999999999544432   355666654444444   44444433222 122111111     11111111


Q ss_pred             CcCCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccc
Q psy12868        167 DRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGD  226 (302)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGD  226 (302)
                      .+.+..+..+++.......+.+-+++..++++.|...+.-++.||++.++.+++|=||.=
T Consensus        88 ~~~~~~~~~~~i~~~~~~~~~iy~~lt~l~~~~~~~~g~~~~~~Aif~avSa~~taGFs~  147 (390)
T TIGR00933        88 GPLSDDKLLPLIKNTAKFIFVIYLLGTILLAVRFVLTGWMPLFDAIFHSISAFNNGGFST  147 (390)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCcCC
Confidence            100000011111111112222233333445555544332578999999999999999854

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.

>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=87.34  E-value=0.54  Score=47.13  Aligned_cols=83  Identities=11%  Similarity=0.190  Sum_probs=46.0

Q ss_pred             hhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHH-HHHHHH
Q psy12868        182 STACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG-MGLIAM  260 (302)
Q Consensus       182 ~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~G-l~l~~~  260 (302)
                      ....+++.++.+++++.+....|.-++.|+++=++-++.|||.|=-++.+..+... ..+..++..++-+++| +.+++.
T Consensus       399 ~~~~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~-~~~~~K~vli~~M~~GRleil~~  477 (499)
T COG0168         399 ALAFFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFA-LPPLAKLVLIALMLIGRLEILTV  477 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccc-cCchHHHHHHHHHHhhccchhhH
Confidence            33344444555666777666555438999999999999999986554443222111 1222234444444444 344444


Q ss_pred             HHHHH
Q psy12868        261 CFDLM  265 (302)
Q Consensus       261 ~~~~i  265 (302)
                      .+...
T Consensus       478 lv~~~  482 (499)
T COG0168         478 LVLFT  482 (499)
T ss_pred             HHhhh
Confidence            44433

>KOG3827|consensus

Probab=85.12  E-value=1.8  Score=41.57  Aligned_cols=57  Identities=12%  Similarity=0.166  Sum_probs=39.0

Q ss_pred             CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        206 WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDV  269 (302)
Q Consensus       206 w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~  269 (302)
                      -+|.-||-|++-|=||||||--.+...       =|...+...+-.++|+.+-+...+.+-.++
T Consensus       111 ~sf~sAFLFSiETQtTIGYG~R~vTee-------CP~aI~ll~~Q~I~g~ii~afm~G~i~aKi  167 (400)
T KOG3827|consen  111 HSFTSAFLFSIETQTTIGYGFRYVTEE-------CPEAIFLLVLQSILGVIINAFMVGAIFAKI  167 (400)
T ss_pred             cchhhhheeeeeeeeeeeccccccCcc-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356789999999999999999888754       233334444566677766666655554444

>PRK10750 potassium transporter; Provisional

Probab=82.38  E-value=1  Score=45.05  Aligned_cols=126  Identities=12%  Similarity=0.022  Sum_probs=57.8

Q ss_pred             hhhhhHhhheeEEeeecceec--cCCccchhhHHHHHHHhHHHHHH--HHHHhhHHHHHHHHHHHHHHhhhcccCc----
Q psy12868         97 FPAALMFSLSIFTMIGYGNMV--PRTLLGKATTVVYAVFGIPLYVL--YFRNMGKVLAQSFRWLYTWLYECTMEDR----  168 (302)
Q Consensus        97 ~~~a~~f~~t~~tTiGyG~i~--P~T~~gr~~~i~y~~~Gipl~~~--~l~~~g~~l~~~~~~~~~~~~~~~~~~~----  168 (302)
                      +.+|+|-+.+.+||-||....  --++..+++.++..++|=-.--.  -+...  ++.-..+...+.+++..+++.    
T Consensus       305 l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~GSTaGGIKv~--R~~vl~~~~~~~l~~~~~P~~V~~v  382 (483)
T PRK10750        305 LNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVI--RILLLFKQGNRELKRLVHPNAVYSI  382 (483)
T ss_pred             HHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCcccCcccHHHH--HHHHHHHHHHHHHHHhcCCCceeee
Confidence            566777777778999998542  23344566666666665110000  00000  111122333333332222111    


Q ss_pred             -CCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeeccccc
Q psy12868        169 -RSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIG  225 (302)
Q Consensus       169 -~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfG  225 (302)
                       ...++.+++........+++.++.+.+++.+. ..++-++.+|+-=+..+++++|.|
T Consensus       383 ~~~gr~i~~~~v~~v~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s  439 (483)
T PRK10750        383 KLGNRALPERILEAVWGFFSAYALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPG  439 (483)
T ss_pred             eECCEECCHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCC
Confidence             11111112111122222222233334555555 456778888887666778877754

>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3

Probab=81.25  E-value=0.24  Score=47.27  Aligned_cols=135  Identities=9%  Similarity=-0.006  Sum_probs=55.1

Q ss_pred             CCChhhhhHhhheeEEeeecceecc--CCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcccCc---
Q psy12868         94 IWSFPAALMFSLSIFTMIGYGNMVP--RTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDR---  168 (302)
Q Consensus        94 ~w~~~~a~~f~~t~~tTiGyG~i~P--~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~---  168 (302)
                      .++...+.||..+..||-||..+..  -++..+++.++..++|=--....-+.=-.++....+.. +.+.+...+.+   
T Consensus       174 ~~~~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~gSTaGGiK~~r~~il~~~~-~~~~~~~~p~~~~~  252 (354)
T PF02386_consen  174 FGSKRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSPGSTAGGIKITRFAILLKSI-REIKRLIHPGAVSP  252 (354)
T ss_dssp             HHHHHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-TTSS--SS-HHHHHHHHHHH-HHHHHHH-SSS---
T ss_pred             HHHHHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCccccccCCcceehhhHHHhhH-HHHHHHhcCCCccc
Confidence            4556778889999999999975543  35566777777666662111100000000111111222 11111111110   


Q ss_pred             --CCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccccCC-cccceeeeeeeeeccccccccc
Q psy12868        169 --RSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWP-ILDSCYFCVTSLCKIGIGDFVP  229 (302)
Q Consensus       169 --~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e~w~-~~da~Yf~fitltTIGfGDivp  229 (302)
                        ...++.+++........+++.++.+++++.+....+..+ +.|+++=+.-.++|||.+=-++
T Consensus       253 ~~~~~r~i~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~  316 (354)
T PF02386_consen  253 VRFNGRRISEQTVRKAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGIT  316 (354)
T ss_dssp             --SSS---TTSHHHHHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS
T ss_pred             eeecceeechhhhhhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCC
Confidence              111112222222222233333444556666666555544 6888888888999998754443

6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
3um7_A	309	Crystal Structure Of The Human Two Pore Domain K+ I		8e-15
3ukm_A	280	Crystal Structure Of The Human Two Pore Domain Pota		3e-11

>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion Channel Traak (K2p4.1) Length = 309

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 11/190 (5%)
Query: 95  WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154
           W   +A  FS +I T IGYGN+  RT  G+   + YA+ GIPL+ +    +G  L  S R
Sbjct: 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLR 173
Query: 155 WLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGG---YVATGTVMFAEWENWPILDS 211
                +    +     +  V P ++   +A L++L G   +V T T +F   E+W  L++
Sbjct: 174 HGIGHIEAIFL-----KWHVPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEA 228
Query: 212 CYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRV 271
            YF + +L  +G GD+V GA   D +        + + ++LLG+   A     +   +RV
Sbjct: 229 IYFVIVTLTTVGFGDYVAGA---DPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285
Query: 272 KVRNLKTDIG 281
             R  + ++G
Sbjct: 286 VSRRTRAEMG 295

>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium Ion Channel K2p1 (Twik-1) Length = 280

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 83/183 (45%), Gaps = 41/183 (22%)
Query: 95  WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGK------- 147
           W F +AL F+ ++ +  GYG+ VP +  GKA  ++Y+V GIP  +L+   + +       
Sbjct: 92  WDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVT 151
Query: 148 ---VLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEW- 203
              VL    RW +                 S +++    A   VL G+V      F    
Sbjct: 152 RRPVLYFHIRWGF-----------------SKQVVAIVHA---VLLGFVTVSCFFFIPAA 191
Query: 204 ------ENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGL 257
                 ++W  L+S YFC  SL  IG+GD+VPG    + K     K+ I   YLLL  GL
Sbjct: 192 VFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEG-YNQKFRELYKIGIT-CYLLL--GL 247
Query: 258 IAM 260
           IAM
Sbjct: 248 IAM 250

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
3um7_A	309	Potassium channel subfamily K member 4; potassium	2e-47
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	4e-42
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	6e-09
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	2e-05
2q67_A	114	Potassium channel protein; inverted teepee, helix	2e-08
2q67_A	114	Potassium channel protein; inverted teepee, helix	3e-06
3ouf_A	97	Potassium channel protein; ION channel, membrane,	4e-08
3ouf_A	97	Potassium channel protein; ION channel, membrane,	3e-06
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	2e-07
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	5e-06
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	1e-04
1p7b_A	333	Integral membrane channel and cytosolic domains; t	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2a9h_A	155	Voltage-gated potassium channel; potassium channel	1e-04
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	1e-04
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	2e-04
1xl4_A	301	Inward rectifier potassium channel; integral membr	2e-04
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	3e-04
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	5e-04
1lnq_A	336	MTHK channels, potassium channel related protein;	8e-04

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309

 Score =  160 bits (405), Expect = 2e-47
 Identities = 63/281 (22%), Positives = 110/281 (39%), Gaps = 18/281 (6%)

Query: 3   TQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTS 62
           T + +  L++ Y V GA  F  +E   E+     + ++  K +                 
Sbjct: 31  TLLALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHP-----------CV 79

Query: 63  WQNACDETLLIYQKNLTHQV--KDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRT 120
                   +      L      +     ++ H  W   +A  FS +I T IGYGN+  RT
Sbjct: 80  SDQELGLLIKEVADALGGGADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRT 139

Query: 121 LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIV 180
             G+   + YA+ GIPL+ +    +G  L  S R     +    ++       V     +
Sbjct: 140 DAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAM 199

Query: 181 PSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGH 240
                L     +V T T +F   E+W  L++ YF + +L  +G GD+V GA   D +   
Sbjct: 200 --LFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGA---DPRQDS 254

Query: 241 HIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIG 281
                + + ++LLG+   A     +   +RV  R  + ++G
Sbjct: 255 PAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRTRAEMG 295

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280

 Score =  145 bits (367), Expect = 4e-42
 Identities = 56/266 (21%), Positives = 105/266 (39%), Gaps = 19/266 (7%)

Query: 10  LIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDE 69
             + Y V GA  FS +E   E      +  L  + + +   ++           +   ++
Sbjct: 19  GYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLS-----------EQQLEQ 67

Query: 70  TLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVV 129
            L    +   + V       + +  W F +AL F+ ++ +  GYG+ VP +  GKA  ++
Sbjct: 68  FLGRVLEASNYGV-SVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCII 126

Query: 130 YAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVL 189
           Y+V GIP  +L+   + + +           +       +        I+         +
Sbjct: 127 YSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQV----VAIVHAVLLGFVTV 182

Query: 190 GGYVATGTVMFAEWE-NWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINF 248
             +      +F+  E +W  L+S YFC  SL  IG+GD+VPG     ++    +  I   
Sbjct: 183 SCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEG--YNQKFRELYKIGIT 240

Query: 249 IYLLLGMGLIAMCFDLMREDVRVKVR 274
            YLLLG+  + +  +   E   +K  
Sbjct: 241 CYLLLGLIAMLVVLETFCELHELKKF 266

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 180 VPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSG 239
           VP+T  L ++   +  GT  F   E      S Y+   ++  +G GD+ P      +  G
Sbjct: 1   VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP-----HTPLG 55

Query: 240 HHIKLIINFIYLLLGMGLIAMCFDLMRE 267
                      ++LG+G  A+  + + E
Sbjct: 56  M----YFTCTLIVLGIGTFAVAVERLLE 79

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 93  EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL 149
           E  S+  +L ++      +GYG+  P T LG   T    V GI  + +    + + L
Sbjct: 25  EGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 186 LWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLI 245
             +    + +GT+ ++  E    +D+ YF V +L  +G G+F P      +  G     I
Sbjct: 28  FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSP-----QTDFGK----I 78

Query: 246 INFIYLLLGMGLIAMCFDLMREDVRVK 272
              +Y+ +G+GL+      +  +V++ 
Sbjct: 79  FTILYIFIGIGLVFGFIHKLAVNVQLP 105

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 18/60 (30%), Positives = 26/60 (43%)

Query: 93  EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS 152
           E      AL FS+   T +G GN  P+T  GK  T++Y   GI L   +   +   +   
Sbjct: 46  EGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 186 LWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLI 245
             +    + +GT+ ++  E    +D+ YF V +L  +G GDF P      +  G     I
Sbjct: 11  FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSP-----QTDFGK----I 61

Query: 246 INFIYLLLGMGLIAMCFDLMREDVRVK 272
              +Y+ +G+GL+      +  +V++ 
Sbjct: 62  FTILYIFIGIGLVFGFIHKLAVNVQLP 88

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 18/60 (30%), Positives = 27/60 (45%)

Query: 93  EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS 152
           E      AL FS+   T +GYG+  P+T  GK  T++Y   GI L   +   +   +   
Sbjct: 29  EGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 186 LWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLI 245
             +    + +GT+ ++  E    LD+ YF V +L  +G G+F P      +  G     +
Sbjct: 31  FVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSP-----QTDFGK----V 81

Query: 246 INFIYLLLGMGLIAM 260
              +Y+ +G+GL+  
Sbjct: 82  FTILYIFIGIGLVFG 96

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 18/54 (33%), Positives = 25/54 (46%)

Query: 93  EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMG 146
           E      AL FS+   T +G GN  P+T  GK  T++Y   GI L   +   + 
Sbjct: 49  EGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLA 102

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 96  SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVL 140
           ++P AL +S+   T +GYG++ P TL G+   VV  V GI  + L
Sbjct: 40  TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL 84

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 19/45 (42%)

Query: 91  VHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
                 F  A  FS+     +GYG+M P+T+   A   +    G+
Sbjct: 91  NQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGM 135

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 55/389 (14%), Positives = 105/389 (26%), Gaps = 139/389 (35%)

Query: 15  AVVGAFSFSWIE-------TKEERPQIARVEDLTNKTVLKLWEI-----TVYYNIMN--- 59
           A V  F    ++       +KEE   I   +D  + T+   W +      +    +    
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 60  -------KTSWQNAC-----DETLLIYQKNLTHQVKDGYDGRTV---HEIWSFPAALMFS 104
                   +  +           + I Q++  +     +    V           AL+  
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-E 146

Query: 105 LS------IFTMIGYGNMVPRTLLGKATTVVYAV-----FGIPLYVLYFRNMGK------ 147
           L       I  ++G G    +T +     + Y V     F I     ++ N+        
Sbjct: 147 LRPAKNVLIDGVLGSG----KTWVALDVCLSYKVQCKMDFKI-----FWLNLKNCNSPET 197

Query: 148 VLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTA----------------CLWVLGG 191
           VL    +     L      +  S  + S  I +   +                CL VL  
Sbjct: 198 VLEMLQK-----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 192 YVATGTVMFAEWENWPILDSCYFCVTSLCKI-------GIGDFVPGANILDSKSGHHIK- 243
            V                ++  F ++  CKI        + DF+  A        HH   
Sbjct: 253 -V---------QNAK-AWNA--FNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 244 --------LIINFIYLLLGMG--------------LIAMCFDLMREDV-------RVKVR 274
                   L++ +    L                  +++  + +R+ +        V   
Sbjct: 298 LTPDEVKSLLLKY----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 275 NLKTDIGLCFEVIR---LRAIACYRQRSI 300
            L T I     V+     R    + + S+
Sbjct: 354 KLTTIIESSLNVLEPAEYR--KMFDRLSV 380

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 20/45 (44%), Positives = 27/45 (60%)

Query: 96  SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVL 140
           S+P AL +S+   T +GYG++ P TL G+   VV  V GI  Y L
Sbjct: 84  SYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGL 128

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 96  SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVL 140
           ++P AL +S+   T +GYG++ P TL G+   VV  V GI  + L
Sbjct: 67  TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL 111

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 96  SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
           S+P A+ +S+   T +GYG+  P T  G+         GI
Sbjct: 40  SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGI 79

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 92  HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
               SF  A  FS+     IGYG ++P   L      + A+ G+
Sbjct: 78  ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 96  SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVL 140
           ++P AL ++    T + YG++ P TL G+   VV  V GI  + L
Sbjct: 61  TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGL 105

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 92  HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
                F  A  FS+     +GYG+M P+T+       +    G+
Sbjct: 74  QFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGM 117

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 17/75 (22%), Positives = 29/75 (38%)

Query: 93  EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS 152
           E  S+  +L ++      +GYG+  P T LG   TV   V GI  + +    + + L   
Sbjct: 42  EGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101

Query: 153 FRWLYTWLYECTMED 167
            +     L +     
Sbjct: 102 EQMKLMGLIDVAKSR 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
3um7_A	309	Potassium channel subfamily K member 4; potassium	100.0
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	100.0
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.68
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.68
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.65
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.65
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.65
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.65
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.64
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.62
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.59
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.58
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.56
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.56
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.55
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.53
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.52
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.52
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.5
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.47
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.45
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.43
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.37
1lnq_A	336	MTHK channels, potassium channel related protein;	99.37
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.33
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.31
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.29
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	99.26
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.1
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.09
1p7b_A	333	Integral membrane channel and cytosolic domains; t	99.07
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.02
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	99.01
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	98.99
1lnq_A	336	MTHK channels, potassium channel related protein;	98.98
1xl4_A	301	Inward rectifier potassium channel; integral membr	98.94
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	98.93
1p7b_A	333	Integral membrane channel and cytosolic domains; t	98.88
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	98.88
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	98.54
3sya_A	340	G protein-activated inward rectifier potassium CH;	98.44
3sya_A	340	G protein-activated inward rectifier potassium CH;	98.42
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.25
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.24
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	97.83
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	96.97
3pjz_A	494	Potassium uptake protein TRKH; structural genomics	90.42
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	86.52

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.5e-49  Score=364.69  Aligned_cols=246  Identities=25%  Similarity=0.408  Sum_probs=193.9

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhhcCCchhhHHHHHHHHHHHHHHHHhhhhhccccCccchhhhHHHHHHHHHHHHHHHHHc
Q psy12868          5 VGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKD   84 (302)
Q Consensus         5 ~~l~~llv~Y~~~GA~iF~~lE~~~e~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~   84 (302)
                      ..|+++.++|+++||.+|++||+|+|.+.++++++.|+++++       +++++++        +.++++.+.+.++.+.
T Consensus        33 l~Ll~~~~~YL~~GA~vF~~LE~~~E~~~~~~l~~~~~~fl~-------~~~~~~~--------~~l~~l~~~v~~A~~~   97 (309)
T 3um7_A           33 LALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLR-------AHPCVSD--------QELGLLIKEVADALGG   97 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHGGGTS-------SCCCSCS--------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH-------hcccccH--------HHHHHHHHHHHHHHhc
Confidence            457888999999999999999999999887777666665544       2344443        4577778888888888


Q ss_pred             CCCCC------CCccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy12868         85 GYDGR------TVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYT  158 (302)
Q Consensus        85 ~~~~~------~~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~~~~~  158 (302)
                      |.+..      +..++|+|.+|+||+++++|||||||++|.|+.||+||++|+++|||++++.++.+++.+.+..++..+
T Consensus        98 Gv~~~~~~~~~~~~~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~  177 (309)
T 3um7_A           98 GADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIG  177 (309)
T ss_dssp             TCCCSSCCCC-----CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             CCCccccccCCCCCCCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            76542      234679999999999999999999999999999999999999999999999999999999988877665


Q ss_pred             HHhhhcccCcCCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcC
Q psy12868        159 WLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKS  238 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~  238 (302)
                      ++.++..+++.+  +...+........++..++++++|+++|...|+|+|.||+||+++|+|||||||++|.++.|+   
T Consensus       178 ~le~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~---  252 (309)
T 3um7_A          178 HIEAIFLKWHVP--PELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQ---  252 (309)
T ss_dssp             HHHHHHTTTC----CCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTC---
T ss_pred             HHHHHHhccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCcccc---
Confidence            554433222110  011111111122334456788899999999999999999999999999999999999998775   


Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        239 GHHIKLIINFIYLLLGMGLIAMCFDLMREDVR  270 (302)
Q Consensus       239 ~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~  270 (302)
                      .++.|++++++|+++|+++++++++.+.+.+.
T Consensus       253 ~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~  284 (309)
T 3um7_A          253 DSPAYQPLVWFWILLGLAYFASVLTTIGNWLR  284 (309)
T ss_dssp             CCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            24678899999999999999999999887664

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=100.00  E-value=4.7e-49  Score=359.02  Aligned_cols=248  Identities=22%  Similarity=0.316  Sum_probs=189.7

Q ss_pred             CchhHHHHHHHHHHHHHHHhHHHhhcCCchhhHHHHHHHHHHHHHHHHhhhhhccccCccchhhhHHHHHHHHHHHHHHH
Q psy12868          2 CTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQ   81 (302)
Q Consensus         2 ~~h~~l~~llv~Y~~~GA~iF~~lE~~~e~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~   81 (302)
                      +.|..|++..++|+++||++|++||+|+|.+.+++.++.|++++++       +++.+        ++.++++.+++.++
T Consensus        11 ~~l~lLil~~~~Yl~~GA~vF~~LE~p~E~~~r~~~~~~~~~fl~~-------~~~~s--------~~~l~~~~~~~~~a   75 (280)
T 3ukm_A           11 TMFGFLVLGYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEE-------HECLS--------EQQLEQFLGRVLEA   75 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CTTCC--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHh-------ccccc--------HHHHHHHHHHHHHH
Confidence            5678888889999999999999999999999888888888877763       22333        34567777777777


Q ss_pred             HHcCCCCC---CCccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy12868         82 VKDGYDGR---TVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYT  158 (302)
Q Consensus        82 ~~~~~~~~---~~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~~~~~  158 (302)
                      .+.|.+..   +..+.|+|.+|+||+++++|||||||++|.|+.||+|+++|+++|||++++.++.+++.+.....+   
T Consensus        76 ~~~g~~~~~~~~~~~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~---  152 (280)
T 3ukm_A           76 SNYGVSVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTR---  152 (280)
T ss_dssp             HTTTCCCC------CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred             HhcCCccccCCCCCCCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            77765432   345789999999999999999999999999999999999999999999999999999887664321   


Q ss_pred             HHhhhcccCcCCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccc-cCCcccceeeeeeeeecccccccccCCCcCCCc
Q psy12868        159 WLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWE-NWPILDSCYFCVTSLCKIGIGDFVPGANILDSK  237 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e-~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~  237 (302)
                      +..+..+++ ...++............++++++++++||++|...| +|+|.||+|||++|+|||||||++|.++.++  
T Consensus       153 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~--  229 (280)
T 3ukm_A          153 RPVLYFHIR-WGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQ--  229 (280)
T ss_dssp             TTTTTC-------CCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSC--
T ss_pred             HHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCccc--
Confidence            100000000 000000000111122234456678889999999998 9999999999999999999999999998763  


Q ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        238 SGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR  270 (302)
Q Consensus       238 ~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~  270 (302)
                      .+...+++++++|+++|++++++.++.+.+...
T Consensus       230 ~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~  262 (280)
T 3ukm_A          230 KFRELYKIGITCYLLLGLIAMLVVLETFCELHE  262 (280)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567899999999999999999999887554

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.68  E-value=7.2e-18  Score=126.52  Aligned_cols=80  Identities=23%  Similarity=0.377  Sum_probs=70.6

Q ss_pred             ehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHH
Q psy12868        181 PSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAM  260 (302)
Q Consensus       181 ~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~  260 (302)
                      |....+.+++.+++.|+++|...|+|++.||+||+++|+|||||||++|.++.+         ++++.+++++|++++++
T Consensus         2 ~~~~~~~l~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~---------r~~~~~~~~~G~~~~~~   72 (82)
T 3ldc_A            2 PATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLG---------MYFTCTLIVLGIGTFAV   72 (82)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCCSHHH---------HHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCCCccH---------HHHHHHHHHHHHHHHHH
Confidence            444556677778899999999999999999999999999999999999997655         58999999999999999


Q ss_pred             HHHHHHHHH
Q psy12868        261 CFDLMREDV  269 (302)
Q Consensus       261 ~~~~i~~~~  269 (302)
                      +++.+.+.+
T Consensus        73 ~~~~i~~~l   81 (82)
T 3ldc_A           73 AVERLLEFL   81 (82)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887653

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.68  E-value=1.2e-17  Score=132.97  Aligned_cols=79  Identities=23%  Similarity=0.478  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHH
Q psy12868        183 TACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCF  262 (302)
Q Consensus       183 ~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~  262 (302)
                      ...+.++++++.+|+++|...|+|++.||+||+++|+|||||||++|.+..|         ++++.+++++|++++++++
T Consensus        25 ~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~g---------r~~~~~~~~~G~~~~~~~~   95 (114)
T 2q67_A           25 QVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFG---------KIFTILYIFIGIGLVFGFI   95 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccCCHhH---------HHHHHHHHHHHHHHHHHHH
Confidence            4455566677889999999999999999999999999999999999997655         5899999999999999999


Q ss_pred             HHHHHHHH
Q psy12868        263 DLMREDVR  270 (302)
Q Consensus       263 ~~i~~~~~  270 (302)
                      +.+.+.+.
T Consensus        96 ~~l~~~~~  103 (114)
T 2q67_A           96 HKLAVNVQ  103 (114)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99987763

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.65  E-value=2.6e-17  Score=135.38  Aligned_cols=79  Identities=13%  Similarity=0.145  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHhhhhhhhhcccc-------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHH
Q psy12868        183 TACLWVLGGYVATGTVMFAEWEN-------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGM  255 (302)
Q Consensus       183 ~~~l~~~~~~~~iga~if~~~e~-------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl  255 (302)
                      ..++++++++++++|.++...|+       |+|.||+||+++|+|||||||++|.+..|         ++++++++++|+
T Consensus         9 ~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~---------r~~~~~~~~~G~   79 (139)
T 3eff_K            9 GAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG---------RLVAVVVMVAGI   79 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHH---------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCH---------HHHHHHHHHHHH
Confidence            34556677788899999999997       99999999999999999999999998765         589999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12868        256 GLIAMCFDLMREDVR  270 (302)
Q Consensus       256 ~l~~~~~~~i~~~~~  270 (302)
                      ++++++++.+.+.+.
T Consensus        80 ~~~~~~~~~i~~~~~   94 (139)
T 3eff_K           80 TSFGLVTAALATWFV   94 (139)
T ss_dssp             HHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998765443

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.65  E-value=8.6e-17  Score=133.67  Aligned_cols=78  Identities=22%  Similarity=0.431  Sum_probs=68.3

Q ss_pred             ehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHH
Q psy12868        181 PSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAM  260 (302)
Q Consensus       181 ~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~  260 (302)
                      +....+.+++++++.|+++|...|+|+|.||+||+++|+|||||||++|.+..|         ++++.+++++|++++++
T Consensus        26 ~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~---------r~~~~~~~~~g~~~~~~   96 (148)
T 3vou_A           26 EFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFG---------KVFTILYIFIGIGLVFG   96 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHH---------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccH---------HHHHHHHHHHHHHHHHH
Confidence            344455667778889999999999999999999999999999999999997655         59999999999999999


Q ss_pred             HHHHHHH
Q psy12868        261 CFDLMRE  267 (302)
Q Consensus       261 ~~~~i~~  267 (302)
                      +++.+.+
T Consensus        97 ~~~~~~~  103 (148)
T 3vou_A           97 FIHKLAV  103 (148)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9997764

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.65  E-value=3e-17  Score=127.01  Aligned_cols=82  Identities=23%  Similarity=0.465  Sum_probs=72.0

Q ss_pred             ehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHH
Q psy12868        181 PSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAM  260 (302)
Q Consensus       181 ~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~  260 (302)
                      +....+.++++++.+|+++|...|+|+|.||+||+++|+|||||||++|.+..|         ++++.+++++|++++++
T Consensus         6 ~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~g---------r~~~~~~~~~G~~~~~~   76 (97)
T 3ouf_A            6 EFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFG---------KIFTILYIFIGIGLVFG   76 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHH---------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccH---------HHHHHHHHHHHHHHHHH
Confidence            344455666778889999999999999999999999999999999999997655         58999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy12868        261 CFDLMREDVRV  271 (302)
Q Consensus       261 ~~~~i~~~~~~  271 (302)
                      +++.+.+.++.
T Consensus        77 ~i~~i~~~~~~   87 (97)
T 3ouf_A           77 FIHKLAVNVQL   87 (97)
T ss_dssp             HHHHHHHHTHH
T ss_pred             HHHHHHHHHhH
Confidence            99999887753

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.65  E-value=4.6e-17  Score=127.29  Aligned_cols=83  Identities=14%  Similarity=0.106  Sum_probs=71.9

Q ss_pred             hhHHHHHHHHHhhhhhhhhccccC-------CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHH
Q psy12868        183 TACLWVLGGYVATGTVMFAEWENW-------PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGM  255 (302)
Q Consensus       183 ~~~l~~~~~~~~iga~if~~~e~w-------~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl  255 (302)
                      ...+..+++++++++.+|...|+|       +|.||+||+++|+|||||||++|.+..+         ++++.+++++|+
T Consensus         9 l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g---------r~~~~~~~l~G~   79 (103)
T 2k1e_A            9 QKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEG---------RKVAEQVMKAGI   79 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSC---------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhH---------HHHHHHHHHHHH
Confidence            334556677788999999999987       8999999999999999999999998877         489999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy12868        256 GLIAMCFDLMREDVRVKVR  274 (302)
Q Consensus       256 ~l~~~~~~~i~~~~~~~~~  274 (302)
                      .+++++++.+.+.+.++.+
T Consensus        80 ~~~~~~~~~i~~~~~~~~~   98 (103)
T 2k1e_A           80 EVFALVTAALATDFVRREE   98 (103)
T ss_dssp             HHHHHTHHHHHTTGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999877765443

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.64  E-value=1.7e-16  Score=130.42  Aligned_cols=63  Identities=29%  Similarity=0.466  Sum_probs=58.3

Q ss_pred             cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHHH
Q psy12868         93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRW  155 (302)
Q Consensus        93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~~  155 (302)
                      ..|+|.+|+||+++|+|||||||++|.|+.||+++++++++|++++.+.++.++..+.+..+.
T Consensus        37 ~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~   99 (139)
T 3eff_K           37 QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE   99 (139)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred             ccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            359999999999999999999999999999999999999999999999999999988765443

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.62  E-value=3.6e-16  Score=117.21  Aligned_cols=55  Identities=25%  Similarity=0.459  Sum_probs=52.8

Q ss_pred             CChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHH
Q psy12868         95 WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL  149 (302)
Q Consensus        95 w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l  149 (302)
                      |++.+|+||+.+++|||||||++|.|+.||+++++|+++|++++...++.+++.+
T Consensus        27 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l   81 (82)
T 3ldc_A           27 ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL   81 (82)
T ss_dssp             CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999988764

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.59  E-value=1.4e-15  Score=118.71  Aligned_cols=59  Identities=24%  Similarity=0.417  Sum_probs=55.5

Q ss_pred             CCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868         94 IWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS  152 (302)
Q Consensus        94 ~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~  152 (302)
                      .|+|.+|+||+++++|||||||++|.|+.||+++++++++|++++.+.++.+++.+.+.
T Consensus        38 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~   96 (103)
T 2k1e_A           38 LISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRR   96 (103)
T ss_dssp             CCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGH
T ss_pred             cccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999998877654

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.58  E-value=1.5e-16  Score=133.34  Aligned_cols=80  Identities=14%  Similarity=0.155  Sum_probs=69.7

Q ss_pred             HHHHHHHHhhhhhhhhccccC-------CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHH
Q psy12868        186 LWVLGGYVATGTVMFAEWENW-------PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLI  258 (302)
Q Consensus       186 l~~~~~~~~iga~if~~~e~w-------~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~  258 (302)
                      ++.++++++++|.++...|+|       ++.||+||+++|+|||||||++|.+..|         ++++.+++++|++++
T Consensus        56 ~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~g---------r~~~~~~~l~Gv~~~  126 (155)
T 2a9h_A           56 TVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWG---------RCVAVVVMVAGITSY  126 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhH---------HHHHHHHHHHHHHHH
Confidence            344566778899999999988       8999999999999999999999998765         589999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy12868        259 AMCFDLMREDVRVKVR  274 (302)
Q Consensus       259 ~~~~~~i~~~~~~~~~  274 (302)
                      +++++.+.+.+.++.+
T Consensus       127 a~~~~~i~~~~~~~~~  142 (155)
T 2a9h_A          127 GLVFAAVATWFVGREQ  142 (155)
T ss_dssp             HHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988865433

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.56  E-value=3.2e-15  Score=115.55  Aligned_cols=57  Identities=30%  Similarity=0.482  Sum_probs=54.3

Q ss_pred             CCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHH
Q psy12868         94 IWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLA  150 (302)
Q Consensus        94 ~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~  150 (302)
                      +|++.+|+||+.+++|||||||++|.|+.||+++++|+++|++++...++.+++.+.
T Consensus        30 ~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~   86 (97)
T 3ouf_A           30 GLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ   86 (97)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             CCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            399999999999999999999999999999999999999999999999999987765

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.56  E-value=5.3e-15  Score=118.98  Aligned_cols=61  Identities=26%  Similarity=0.439  Sum_probs=57.0

Q ss_pred             cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHH
Q psy12868         93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSF  153 (302)
Q Consensus        93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~  153 (302)
                      ..|++.+|+||+++++|||||||++|.|+.||+++++++++|++++.+.++.+++.+.+..
T Consensus        58 ~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~  118 (122)
T 2ih3_C           58 QLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE  118 (122)
T ss_dssp             CCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4599999999999999999999999999999999999999999999999999988877643

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.55  E-value=1.5e-15  Score=122.21  Aligned_cols=79  Identities=9%  Similarity=0.101  Sum_probs=68.6

Q ss_pred             HHHHHHHhhhhhhhhcccc-------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHH
Q psy12868        187 WVLGGYVATGTVMFAEWEN-------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIA  259 (302)
Q Consensus       187 ~~~~~~~~iga~if~~~e~-------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~  259 (302)
                      ..+++.+.+++.++...|+       |++.||+||+++|+|||||||++|.+..|         ++++.+++++|+++++
T Consensus        34 ~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g---------r~~~~~~~~~Gi~~~~  104 (122)
T 2ih3_C           34 VLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWG---------RLVAVVVMVAGITSFG  104 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH---------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccH---------HHHHHHHHHHHHHHHH
Confidence            3445566788888888887       99999999999999999999999998765         5899999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy12868        260 MCFDLMREDVRVKVR  274 (302)
Q Consensus       260 ~~~~~i~~~~~~~~~  274 (302)
                      +.++.+.+.+.++.+
T Consensus       105 ~~~~~i~~~~~~~~~  119 (122)
T 2ih3_C          105 LVTAALATWFVGREQ  119 (122)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988876544

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.53  E-value=5.4e-16  Score=127.29  Aligned_cols=68  Identities=25%  Similarity=0.369  Sum_probs=57.1

Q ss_pred             hhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        194 ATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR  270 (302)
Q Consensus       194 ~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~  270 (302)
                      +.++..+...|.|+|.||+||+++|+|||||||++|.+..|         ++++.+++++|+++++++++.+.+.+.
T Consensus        30 ~~~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g---------r~~~~~~~~~g~~~~~~~~~~i~~~~~   97 (137)
T 4h33_A           30 IPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIG---------RILASIMMLFGIAFIGMITSTITNFFR   97 (137)
T ss_dssp             THHHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH---------HHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCCCHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445699999999999999999999999998766         589999999999999999999886553

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.52  E-value=9.4e-15  Score=116.19  Aligned_cols=57  Identities=32%  Similarity=0.455  Sum_probs=54.0

Q ss_pred             cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHH
Q psy12868         93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL  149 (302)
Q Consensus        93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l  149 (302)
                      ++|++.+|+||+++++|||||||++|.|+.||+++++|+++|++++...++.+++.+
T Consensus        46 e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~  102 (114)
T 2q67_A           46 EGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNV  102 (114)
T ss_dssp             SCCCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            359999999999999999999999999999999999999999999999999888765

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.52  E-value=4.2e-15  Score=124.41  Aligned_cols=58  Identities=36%  Similarity=0.612  Sum_probs=54.6

Q ss_pred             CCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHH
Q psy12868         94 IWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ  151 (302)
Q Consensus        94 ~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~  151 (302)
                      .+++.+|+||+++|+|||||||++|.|+.||+++++++++|+.++.+.++.++..+.+
T Consensus        82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~  139 (155)
T 2a9h_A           82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG  139 (155)
T ss_dssp             TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999999999999988877664

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.50  E-value=2.5e-16  Score=133.32  Aligned_cols=70  Identities=13%  Similarity=0.217  Sum_probs=62.4

Q ss_pred             HHHHHHhhhhhhhhcccc-------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHH
Q psy12868        188 VLGGYVATGTVMFAEWEN-------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAM  260 (302)
Q Consensus       188 ~~~~~~~iga~if~~~e~-------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~  260 (302)
                      ++++++++++.++...|+       |+|.||+||+++|+|||||||++|.+..|+         +++++++++|++++++
T Consensus        41 ~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r---------~~~~~~~l~G~~~~~~  111 (166)
T 3pjs_K           41 LLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR---------LVAVVVMVAGITSFGL  111 (166)
T ss_dssp             SSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTT---------TTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHH---------HHHHHHHHHHHHHHHH
Confidence            345567788888988898       999999999999999999999999988774         8999999999999999


Q ss_pred             HHHHHH
Q psy12868        261 CFDLMR  266 (302)
Q Consensus       261 ~~~~i~  266 (302)
                      +++.+.
T Consensus       112 ~~~~i~  117 (166)
T 3pjs_K          112 VTAALA  117 (166)
T ss_dssp             HHTTSS
T ss_pred             HHHHHH
Confidence            999754

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.47  E-value=5e-14  Score=116.90  Aligned_cols=54  Identities=31%  Similarity=0.464  Sum_probs=52.3

Q ss_pred             CCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhH
Q psy12868         94 IWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGK  147 (302)
Q Consensus        94 ~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~  147 (302)
                      .|+|.+|+||+++++|||||||++|.|+.||+++++|+++|++++...++.++.
T Consensus        50 ~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~  103 (148)
T 3vou_A           50 GLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAV  103 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999999999999999999999999998886

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.45  E-value=3e-14  Score=131.45  Aligned_cols=66  Identities=18%  Similarity=0.359  Sum_probs=57.7

Q ss_pred             CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12868        206 WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDI  280 (302)
Q Consensus       206 w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~~~~~~~~~  280 (302)
                      |+|.||+||+++|+|||||||++|.+..|         ++++++|+++|+++++++++.+.+.+....++..++.
T Consensus       114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~g---------k~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~l  179 (309)
T 3um7_A          114 WDLGSAFFFSGTIITTIGYGNVALRTDAG---------RLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHI  179 (309)
T ss_dssp             CSHHHHHHHHHHHHTSCCCCSSCCCSHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CChhhhhHhhheeeeecccCCCCCCCccc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            99999999999999999999999998876         5999999999999999999999888876555544433

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.43  E-value=2.7e-14  Score=117.16  Aligned_cols=58  Identities=28%  Similarity=0.573  Sum_probs=55.2

Q ss_pred             cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHH
Q psy12868         93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLA  150 (302)
Q Consensus        93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~  150 (302)
                      +.|+|.+|+||+++|+|||||||++|.|+.||+++++++++|+.++.+.++.+++.+.
T Consensus        40 ~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~   97 (137)
T 4h33_A           40 EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFR   97 (137)
T ss_dssp             SCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999999999999999999999999999988765

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.37  E-value=6.4e-14  Score=118.49  Aligned_cols=61  Identities=30%  Similarity=0.515  Sum_probs=56.5

Q ss_pred             ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868         92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS  152 (302)
Q Consensus        92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~  152 (302)
                      ...|+|.+|+||+++|+|||||||++|.|+.||+++++++++|++++.+.++.++..+...
T Consensus        63 ~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~  123 (166)
T 3pjs_K           63 AQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ  123 (166)
T ss_dssp             CCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred             cccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3459999999999999999999999999999999999999999999999999998877543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=99.37  E-value=5.5e-15  Score=137.74  Aligned_cols=76  Identities=20%  Similarity=0.329  Sum_probs=65.5

Q ss_pred             HHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy12868        187 WVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMR  266 (302)
Q Consensus       187 ~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~  266 (302)
                      +++++++++|+++|...|+|+|.||+||+++|+|||||||++|.+..|         ++++.+++++|+++++++++.+.
T Consensus        25 ~~~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~---------r~~~~~~~~~g~~~~~~~~~~~~   95 (336)
T 1lnq_A           25 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLG---------MYFTVTLIVLGIGTFAVAVERLL   95 (336)
T ss_dssp             TTTTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSH---------HHHHTHHHHTTSTTTTTHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCCCcCH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556788999999999999999999999999999999999997765         58999999999999999999887


Q ss_pred             HHHHH
Q psy12868        267 EDVRV  271 (302)
Q Consensus       267 ~~~~~  271 (302)
                      +.+..
T Consensus        96 ~~~~~  100 (336)
T 1lnq_A           96 EFLIN  100 (336)
T ss_dssp             TTC--
T ss_pred             HHHHH
Confidence            66653

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.33  E-value=2.1e-13  Score=124.02  Aligned_cols=58  Identities=21%  Similarity=0.413  Sum_probs=53.2

Q ss_pred             CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        206 WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVK  272 (302)
Q Consensus       206 w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~  272 (302)
                      |+|.||+||+++|+|||||||++|.++.|         ++++++|+++|++++.+.++.+.+.+...
T Consensus        92 w~~~~a~yf~~~t~tTvGyGd~~P~T~~G---------k~f~~~~~l~Gi~~~~~~~~~~~~~l~~~  149 (280)
T 3ukm_A           92 WDFTSALFFASTVLSTTGYGHTVPLSDGG---------KAFCIIYSVIGIPFTLLFLTAVVQRITVH  149 (280)
T ss_dssp             SSHHHHHHHHHHHHTTCCCCSSCCCSHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhcchhheeeeeeccccCCcCCCCchh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998877         59999999999999999999988776544

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.31  E-value=1.6e-12  Score=114.32  Aligned_cols=59  Identities=27%  Similarity=0.460  Sum_probs=55.6

Q ss_pred             cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHH
Q psy12868         93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ  151 (302)
Q Consensus        93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~  151 (302)
                      ..|++.+|+||+++++||+||||++|.|+.||+++++++++|+.++.+.++.+++.+.+
T Consensus       162 ~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~  220 (223)
T 1orq_C          162 SIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK  220 (223)
T ss_dssp             SCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999887765

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.29  E-value=6.8e-13  Score=116.68  Aligned_cols=78  Identities=18%  Similarity=0.265  Sum_probs=67.5

Q ss_pred             HHHHHHHHhhhhhhhhcccc-------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHH
Q psy12868        186 LWVLGGYVATGTVMFAEWEN-------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLI  258 (302)
Q Consensus       186 l~~~~~~~~iga~if~~~e~-------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~  258 (302)
                      +..++.++.++|.++...|+       |++.||+||+++|+|||||||++|.+..|         ++++.+++++|++++
T Consensus       137 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~---------~~~~~~~~~~G~~~~  207 (223)
T 1orq_C          137 FGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIG---------KVIGIAVMLTGISAL  207 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhH---------HHHHHHHHHHHHHHH
Confidence            34455566778888888887       99999999999999999999999997765         589999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy12868        259 AMCFDLMREDVRVK  272 (302)
Q Consensus       259 ~~~~~~i~~~~~~~  272 (302)
                      +++++.+.+.+.++
T Consensus       208 ~~~i~~i~~~~~~~  221 (223)
T 1orq_C          208 TLLIGTVSNMFQKI  221 (223)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999888654

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=99.26  E-value=4.6e-13  Score=133.05  Aligned_cols=101  Identities=11%  Similarity=0.085  Sum_probs=69.4

Q ss_pred             HHHHHHHHhhhhhhhhc----ccc--CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHH
Q psy12868        186 LWVLGGYVATGTVMFAE----WEN--WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIA  259 (302)
Q Consensus       186 l~~~~~~~~iga~if~~----~e~--w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~  259 (302)
                      ++.+++.+++++++|..    .|+  |+|.||+||+++|+|||||||++|.+..|         ++++++++++|+++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~---------~~~~~~~~~~g~~~~~   94 (565)
T 4gx0_A           24 CAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAG---------YLFASIVTVSGVIFLD   94 (565)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHH---------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCccH---------HHHHHHHHHHHHHHHH
Confidence            33444455566665554    566  99999999999999999999999997655         5899999999999999


Q ss_pred             HHHHH-HHHHHHH-HHHHHH-H-Hhhhhhhhccchhhccc
Q psy12868        260 MCFDL-MREDVRV-KVRNLK-T-DIGLCFEVIRLRAIACY  295 (302)
Q Consensus       260 ~~~~~-i~~~~~~-~~~~~~-~-~~~~~~~~~~~~~i~~~  295 (302)
                      ++++. +.+.+.. ..++.. . +.++..++.+.|+++|=
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hviI~G  134 (565)
T 4gx0_A           95 IILPFGFVSMFLAPWIERRLRYHPTIELPDDTRGHILIFG  134 (565)
T ss_dssp             THHHHHHHHHHHHHHHHHHTSCCCBCCCCTTCCSCEEEES
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCeEEEEC
Confidence            98887 3333221 111111 1 12222356677887774

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.10  E-value=3.2e-11  Score=112.99  Aligned_cols=81  Identities=16%  Similarity=0.242  Sum_probs=67.9

Q ss_pred             HHHHHHHHhhhhhhhhccccC-------CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHH
Q psy12868        186 LWVLGGYVATGTVMFAEWENW-------PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLI  258 (302)
Q Consensus       186 l~~~~~~~~iga~if~~~e~w-------~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~  258 (302)
                      +.++++.+.++|.++...|+|       ++.||+||+++|+|||||||++|.+..|         ++++.+++++|++++
T Consensus       133 ~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~---------~~~~~~~~~~g~~~~  203 (355)
T 3beh_A          133 TTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAG---------RVLAGAVMMSGIGIF  203 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhH---------HHHHHHHHHHHHHHH
Confidence            344455666788888888875       8999999999999999999999997755         588999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy12868        259 AMCFDLMREDVRVKVRN  275 (302)
Q Consensus       259 ~~~~~~i~~~~~~~~~~  275 (302)
                      ++.++.+.+.+.+..++
T Consensus       204 ~~~~~~i~~~~~~~~~~  220 (355)
T 3beh_A          204 GLWAGILATGFYQEVRR  220 (355)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999998888765443

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.09  E-value=7.7e-12  Score=115.27  Aligned_cols=56  Identities=21%  Similarity=0.335  Sum_probs=50.9

Q ss_pred             CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        206 WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR  270 (302)
Q Consensus       206 w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~  270 (302)
                      ++|.||+||+++|+|||||||++|.+..|         ++++.+.+++|+.+++++++.+...+.
T Consensus        81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~g---------r~~~~~~~l~G~~~~a~~~g~v~~~~~  136 (301)
T 1xl4_A           81 GSFTDAFFFSVQTMATIGYGKLIPIGPLA---------NTLVTLEALCGMLGLAVAASLIYARFT  136 (301)
T ss_dssp             TCHHHHHHHHHHHHTTCCCSSSCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHhhhheeccCCCCCcCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999987655         588999999999999999998887764

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=99.07  E-value=1.8e-11  Score=114.13  Aligned_cols=69  Identities=19%  Similarity=0.276  Sum_probs=56.6

Q ss_pred             Hhhhhhhhhcc-------ccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy12868        193 VATGTVMFAEW-------ENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLM  265 (302)
Q Consensus       193 ~~iga~if~~~-------e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i  265 (302)
                      ++++|++|...       +.++|.||+||+++|+|||||||++|.+..|         ++++.+++++|+.+++++++.+
T Consensus        75 ~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~g---------r~~~~~~~l~G~~~~a~~ig~i  145 (333)
T 1p7b_A           75 NTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYA---------HAIATLEIFVGMSGIALSTGLV  145 (333)
T ss_dssp             HHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            34556665432       1368999999999999999999999997655         5889999999999999999988


Q ss_pred             HHHHH
Q psy12868        266 REDVR  270 (302)
Q Consensus       266 ~~~~~  270 (302)
                      ...+.
T Consensus       146 ~~~~~  150 (333)
T 1p7b_A          146 FARFA  150 (333)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            87664

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.02  E-value=3.3e-10  Score=106.03  Aligned_cols=60  Identities=22%  Similarity=0.450  Sum_probs=55.4

Q ss_pred             CChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHH
Q psy12868         95 WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR  154 (302)
Q Consensus        95 w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~  154 (302)
                      .++.+|+||+++|+||+||||++|.|+.||+++++.+++|+.++.+.++.+++.+.+..+
T Consensus       160 ~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~  219 (355)
T 3beh_A          160 GSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR  219 (355)
T ss_dssp             SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999888776543

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=99.01  E-value=1.6e-10  Score=114.79  Aligned_cols=57  Identities=16%  Similarity=0.360  Sum_probs=51.9

Q ss_pred             CCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHH-hhHHHH
Q psy12868         94 IWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRN-MGKVLA  150 (302)
Q Consensus        94 ~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~-~g~~l~  150 (302)
                      .|+|.+|+||+++|+|||||||++|.|+.||+++++++++|++++.+.++. +.+.+.
T Consensus        49 ~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  106 (565)
T 4gx0_A           49 AYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL  106 (565)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             CCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            499999999999999999999999999999999999999999999988876 554443

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=98.99  E-value=1.1e-10  Score=115.17  Aligned_cols=78  Identities=18%  Similarity=0.202  Sum_probs=53.7

Q ss_pred             CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy12868        207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEV  286 (302)
Q Consensus       207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  286 (302)
                      ++.||+||+++|+|||||||++|.+..|         ++++.+++++|+.+++++++.+.+.+....++.+   .+..++
T Consensus       375 s~~~a~y~~~vT~TTvGYGDi~P~t~~g---------r~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~---~~~~~~  442 (514)
T 2r9r_B          375 SIPDAFWWAVVSMTTVGYGDMVPTTIGG---------KIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET---EGEEQA  442 (514)
T ss_dssp             SHHHHHHHHHHHHTTCCCSSSCCCSHHH---------HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC---------
T ss_pred             chhhhhheeeeEEEecccCCCCCCCcch---------HhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            8899999999999999999999997655         5888999999999999999999988876555322   233466


Q ss_pred             ccchhhcccc
Q psy12868        287 IRLRAIACYR  296 (302)
Q Consensus       287 ~~~~~i~~~~  296 (302)
                      .+.|++.|-.
T Consensus       443 l~~h~iicg~  452 (514)
T 2r9r_B          443 QYLQVTSSPK  452 (514)
T ss_dssp             ----------
T ss_pred             hhCCEEEeCC
Confidence            7788888763

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=98.98  E-value=3.5e-11  Score=111.88  Aligned_cols=61  Identities=26%  Similarity=0.409  Sum_probs=55.3

Q ss_pred             ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868         92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS  152 (302)
Q Consensus        92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~  152 (302)
                      -+.|+|.+|+||+++++|||||||++|.|..||+++++++++|++++.+.++.+.+.+...
T Consensus        41 ~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~  101 (336)
T 1lnq_A           41 IEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR  101 (336)
T ss_dssp             SSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred             HhCCCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3569999999999999999999999999999999999999999999999999998877653

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=98.94  E-value=1.6e-10  Score=106.49  Aligned_cols=59  Identities=22%  Similarity=0.318  Sum_probs=53.5

Q ss_pred             ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHH
Q psy12868         92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLA  150 (302)
Q Consensus        92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~  150 (302)
                      ...|+|.+|+||+++|+|||||||++|.|+.||+++++.+++|+.++++.++.+...++
T Consensus        78 ~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~  136 (301)
T 1xl4_A           78 ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT  136 (301)
T ss_dssp             SCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34699999999999999999999999999999999999999999999998877665554

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=98.93  E-value=2.3e-10  Score=106.27  Aligned_cols=59  Identities=22%  Similarity=0.303  Sum_probs=54.0

Q ss_pred             cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHH
Q psy12868         93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ  151 (302)
Q Consensus        93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~  151 (302)
                      ..|+|.+|+||+++|+|||||||+.|.|..||+++++.+++|+.++++.++.+...+++
T Consensus        75 ~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~  133 (321)
T 2qks_A           75 FPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ  133 (321)
T ss_dssp             SSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999988887766554

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=98.88  E-value=4.9e-10  Score=104.50  Aligned_cols=59  Identities=24%  Similarity=0.349  Sum_probs=53.8

Q ss_pred             cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHH
Q psy12868         93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ  151 (302)
Q Consensus        93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~  151 (302)
                      ..++|.+|+||+++|+|||||||++|.|+.||+++++++++|+.++.+.++.+...+++
T Consensus        93 ~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~  151 (333)
T 1p7b_A           93 SPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR  151 (333)
T ss_dssp             SSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999988777666553

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=98.88  E-value=7.1e-10  Score=102.94  Aligned_cols=58  Identities=21%  Similarity=0.284  Sum_probs=51.9

Q ss_pred             cCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        205 NWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRV  271 (302)
Q Consensus       205 ~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~  271 (302)
                      +|+|.||+||+++|+|||||||++|.+..|         ++++.+.+++|+.+++++++.+...+.+
T Consensus        76 ~~s~~~a~y~s~vT~tTVGYGDi~P~t~~g---------r~~~~~~~l~G~~~~a~~~g~i~~~~~~  133 (321)
T 2qks_A           76 PAGFGGAFFFSVETLATVGYGDMHPQTVYA---------HWIATLEIFVGMSSIALATGCAFIKMSQ  133 (321)
T ss_dssp             STTHHHHHHHHHHHHTTCCCCSSCBCSHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CcchhheeeeeeEEeccccCCCcCcccHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999997755         5889999999999999999998877653

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=98.54  E-value=2.6e-08  Score=98.04  Aligned_cols=63  Identities=25%  Similarity=0.402  Sum_probs=56.5

Q ss_pred             ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHH
Q psy12868         92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR  154 (302)
Q Consensus        92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~  154 (302)
                      ....++.+|+||+++++||+||||+.|.|..||+++++++++|+.++.+.++.+.+.+....+
T Consensus       371 ~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~  433 (514)
T 2r9r_B          371 SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH  433 (514)
T ss_dssp             CSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             ccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445789999999999999999999999999999999999999999999999888876665543

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=98.44  E-value=9.3e-08  Score=89.11  Aligned_cols=59  Identities=19%  Similarity=0.180  Sum_probs=49.8

Q ss_pred             CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVK  272 (302)
Q Consensus       207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~  272 (302)
                      +|.||+||+++|+|||||||+.|.+.       .+..+++..+-+++|+.+.+.+.+.+-.++.+.
T Consensus        91 sf~~af~fSv~T~TTvGYGd~~p~~~-------~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp  149 (340)
T 3sya_A           91 GFVSAFLFSIETETTIGYGYRVITDK-------CPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP  149 (340)
T ss_dssp             STTHHHHHHHHHHSCCCCSSSCBCTT-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred             CHHHHHhhhheeeeeecCCCccCcCc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            78999999999999999999999742       223458888999999999999999888776543

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=98.42  E-value=6.6e-08  Score=90.11  Aligned_cols=58  Identities=26%  Similarity=0.315  Sum_probs=50.7

Q ss_pred             CCChhhhhHhhheeEEeeecceeccC--CccchhhHHHHHHHhHHHHHHHHHHhhHHHHH
Q psy12868         94 IWSFPAALMFSLSIFTMIGYGNMVPR--TLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ  151 (302)
Q Consensus        94 ~w~~~~a~~f~~t~~tTiGyG~i~P~--T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~  151 (302)
                      .=+|.+|+||+++|+|||||||++|.  |+.|++++.+-+++|+.+.+++.+.+...+++
T Consensus        89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~sr  148 (340)
T 3sya_A           89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQ  148 (340)
T ss_dssp             CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            35799999999999999999999997  78999999999999999999888766554443

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.25  E-value=2.8e-07  Score=85.94  Aligned_cols=56  Identities=27%  Similarity=0.319  Sum_probs=48.7

Q ss_pred             CChhhhhHhhheeEEeeecceecc--CCccchhhHHHHHHHhHHHHHHHHHHhhHHHH
Q psy12868         95 WSFPAALMFSLSIFTMIGYGNMVP--RTLLGKATTVVYAVFGIPLYVLYFRNMGKVLA  150 (302)
Q Consensus        95 w~~~~a~~f~~t~~tTiGyG~i~P--~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~  150 (302)
                      =+|.+|+||+++|+|||||||++|  .|+.|+++..+=+++|+-+.+++.+.+...++
T Consensus        93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~s  150 (343)
T 3spc_A           93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMA  150 (343)
T ss_dssp             CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999997  49999999999999999988888766544433

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.24  E-value=5.5e-07  Score=84.02  Aligned_cols=58  Identities=9%  Similarity=0.157  Sum_probs=48.4

Q ss_pred             CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRV  271 (302)
Q Consensus       207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~  271 (302)
                      +|.||+||+++|+|||||||+.|...       .+..+++..+-.++|+.+++.+.+.+-.++.+
T Consensus        94 sf~~af~fSv~T~TTvGYGd~~p~~~-------~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr  151 (343)
T 3spc_A           94 GFVAAFLFSIETQTTIGYGFRCVTEE-------CPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR  151 (343)
T ss_dssp             SHHHHHHHHHHHHSCCCCSSSEECSS-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHhheeeeeeEeecCCCccCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            78999999999999999999998632       23345788899999999999999988866643

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=97.83  E-value=5.8e-06  Score=74.84  Aligned_cols=61  Identities=8%  Similarity=0.110  Sum_probs=48.3

Q ss_pred             Ccccceeeeeeeeeccccc-ccc-cCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        207 PILDSCYFCVTSLCKIGIG-DFV-PGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVK  272 (302)
Q Consensus       207 ~~~da~Yf~fitltTIGfG-Div-p~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~  272 (302)
                      ++.+|+|+.|+++||+||| |++ |.+..|+     ...+.+..+.++.|+.+++++++.+.+.+...
T Consensus       180 s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~-----~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~  242 (285)
T 3rvy_A          180 TLGESFYTLFQVMTLESWSMGIVRPLMEVYP-----YAWVFFIPFIFVVTFVMINLVVAICVDAMAIL  242 (285)
T ss_dssp             SHHHHHHHHHHHHTTTTCCCCCHHHHHTTCT-----TTHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCC-----hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999 997 8876542     23356677788889999999999998877543

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=96.97  E-value=0.00018  Score=64.83  Aligned_cols=60  Identities=10%  Similarity=0.014  Sum_probs=48.7

Q ss_pred             CCChhhhhHhhheeEEeeecc-eec-cCCccc----hhhHHHHHHHhHHHHHHHHHHhhHHHHHHH
Q psy12868         94 IWSFPAALMFSLSIFTMIGYG-NMV-PRTLLG----KATTVVYAVFGIPLYVLYFRNMGKVLAQSF  153 (302)
Q Consensus        94 ~w~~~~a~~f~~t~~tTiGyG-~i~-P~T~~g----r~~~i~y~~~Gipl~~~~l~~~g~~l~~~~  153 (302)
                      -=|+++|+++++.++||.||| |+. |.|..|    +.|.++..+.|+-++.+.++.+.+.+.+..
T Consensus       178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~  243 (285)
T 3rvy_A          178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN  243 (285)
T ss_dssp             HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999 996 998876    777888888888888888888887776543

>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}

Probab=90.42  E-value=0.18  Score=49.13  Aligned_cols=151  Identities=11%  Similarity=0.032  Sum_probs=71.8

Q ss_pred             ChhhhhHhhheeEEeeeccee--ccCCccchhhHHHHHHHhH-HHHH-HHHHHhhHHHHHHHHHHHHHHhhhcccC----
Q psy12868         96 SFPAALMFSLSIFTMIGYGNM--VPRTLLGKATTVVYAVFGI-PLYV-LYFRNMGKVLAQSFRWLYTWLYECTMED----  167 (302)
Q Consensus        96 ~~~~a~~f~~t~~tTiGyG~i--~P~T~~gr~~~i~y~~~Gi-pl~~-~~l~~~g~~l~~~~~~~~~~~~~~~~~~----  167 (302)
                      .+.+|+|-+.+..||-||...  ..-++..+++.++..++|= |-.. --+..  .++.-.++..++.+++..+++    
T Consensus       306 ~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv--~r~~il~~~~~~el~~~~~P~~v~~  383 (494)
T 3pjz_A          306 AFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKV--IRILLLTLQGARELKRLVHPRAVYT  383 (494)
T ss_dssp             HHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCH--HHHHHHHHHHHHHHHHHHCSSSCCC
T ss_pred             HHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhH--HHHHHHHHHHHHHHhcccCCCccee
Confidence            367888889999999998744  3345556666666666661 1000 00000  011112222222222221111    


Q ss_pred             -cCCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccc--cccccCCCcCCCcCCcchhh
Q psy12868        168 -RRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGI--GDFVPGANILDSKSGHHIKL  244 (302)
Q Consensus       168 -~~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGf--GDivp~~~~~~~~~~~~~~~  244 (302)
                       +...++.+++........+++.+..+.+++++... .+-++.+|+.=+..+++|||.  |+.-|..+     +-++..+
T Consensus       384 v~~~~r~i~~~~v~~~~~~~~ly~~~~~~~~~~l~~-~g~~~~~a~~~v~Sal~nvG~s~G~vg~~~~-----~L~~~~K  457 (494)
T 3pjz_A          384 IKVGGSALPQRVVDAVWGFFSAYALVFVVCMLGLIA-TGMDELSAFSAVAATLNNLGPGLGEVALHFG-----DVNDKAK  457 (494)
T ss_dssp             CCSSSCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHH-HSSCHHHHHHHHHHHTTTCCSCCSSSCCCCS-----SSCHHHH
T ss_pred             eeECCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHcCCCCcccccCCCcc-----cCCHHHH
Confidence             11112222222222222222233334455555544 357889998888888999984  54333221     1233344


Q ss_pred             hHHHHHHHHH
Q psy12868        245 IINFIYLLLG  254 (302)
Q Consensus       245 ~~~~~~il~G  254 (302)
                      ++..+.+++|
T Consensus       458 ~vl~~~M~~G  467 (494)
T 3pjz_A          458 WVLIVSMLFG  467 (494)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555555

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=86.52  E-value=0.16  Score=43.68  Aligned_cols=60  Identities=5%  Similarity=-0.050  Sum_probs=41.7

Q ss_pred             CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR  270 (302)
Q Consensus       207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~  270 (302)
                      ++.+|++..|.++||.|++|+......+.    ......+...+++.+..++.+.+..+.+.+.
T Consensus       165 ~~~~a~~~lf~~~t~~~w~~i~~~~~~~~----~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~  224 (229)
T 4dxw_A          165 DLGISLITLFQVLTLSSWETVMLPMQEIY----WWSWVYFFSFIIICSITILNLVIAILVDVVI  224 (229)
T ss_dssp             SHHHHHHHHHHHHTTSSTHHHHHHHHTTC----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999865543221    1122233334455557888888888887775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	4e-11
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	2e-07
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	6e-04
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	6e-04

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 56.3 bits (136), Expect = 4e-11
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 181 PSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGH 240
           P+T  L ++   +  GT  F   E      S Y+   ++  +G GD+ P           
Sbjct: 1   PATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP---------ST 51

Query: 241 HIKLIINFIYLLLGMGLIAMCFDLMRE 267
            + +      ++LG+G  A+  + + E
Sbjct: 52  PLGMYFTVTLIVLGIGTFAVAVERLLE 78

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 93  EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL 149
           E  S+  +L ++      +GYG+  P T LG   TV   V GI  + +    + + L
Sbjct: 24  EGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 92  HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ 151
               SF  A  FS+     IGYG ++P   L      + A+ G+    +    +     +
Sbjct: 56  ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 115

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 92  HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ 151
            ++ ++P AL +S+   T +GYG++ P TL G+   VV  V GI  + L    +      
Sbjct: 36  AQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVG 95

Query: 152 SFR 154
             +
Sbjct: 96  REQ 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.61
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.55
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.54
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.45
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.27
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.23
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.23
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.17
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	97.34
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	96.6

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.61  E-value=2.5e-18  Score=126.68  Aligned_cols=73  Identities=22%  Similarity=0.394  Sum_probs=64.6

Q ss_pred             HHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy12868        186 LWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLM  265 (302)
Q Consensus       186 l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i  265 (302)
                      +..++.++.+|+..|+..|+|++.||+||+++|+|||||||++|.++.+         ++++.+++++|+.+++++++.+
T Consensus         6 l~~~~~~~~~g~~~~~~~e~~s~~dalyf~~~T~tTiGyGD~~P~t~~~---------r~~~~~~~l~g~~~~~~~i~~i   76 (80)
T d1lnqa2           6 LLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLG---------MYFTVTLIVLGIGTFAVAVERL   76 (80)
T ss_dssp             TTTTTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSH---------HHHHTHHHHTTSTTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhheeeccCCCCCCCCcch---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566788999999999999999999999999999999999998766         5899999999999999998877


Q ss_pred             HH
Q psy12868        266 RE  267 (302)
Q Consensus       266 ~~  267 (302)
                      .+
T Consensus        77 ~~   78 (80)
T d1lnqa2          77 LE   78 (80)
T ss_dssp             TT
T ss_pred             HH
Confidence            54

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.55  E-value=7.1e-16  Score=118.64  Aligned_cols=82  Identities=12%  Similarity=0.125  Sum_probs=67.7

Q ss_pred             hHHHHHHHHHhhhhhhhhcccc-------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHH
Q psy12868        184 ACLWVLGGYVATGTVMFAEWEN-------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMG  256 (302)
Q Consensus       184 ~~l~~~~~~~~iga~if~~~e~-------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~  256 (302)
                      .+++.+++.+++++.++...|+       .++.||+||+++|+|||||||++|.+..|         ++++.+++++|++
T Consensus        10 ~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~g---------r~~~~~~~~~Gi~   80 (103)
T d1r3jc_          10 AATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG---------RCVAVVVMVAGIT   80 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH---------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhH---------HHHHHHHHHHHHH
Confidence            3444555566777777777774       47899999999999999999999998766         5899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy12868        257 LIAMCFDLMREDVRVKVR  274 (302)
Q Consensus       257 l~~~~~~~i~~~~~~~~~  274 (302)
                      +++..++.+.+.+..+.+
T Consensus        81 ~~~~~~~~i~~~~~~~~~   98 (103)
T d1r3jc_          81 SFGLVTAALATWFVGREQ   98 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999988865433

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.54  E-value=4.4e-15  Score=114.13  Aligned_cols=58  Identities=31%  Similarity=0.545  Sum_probs=53.9

Q ss_pred             CCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHH
Q psy12868         94 IWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ  151 (302)
Q Consensus        94 ~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~  151 (302)
                      ..++.+|+||+++++|||||||++|.|+.||+++++++++|+.++.+.++.+++.+.+
T Consensus        38 ~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~   95 (103)
T d1r3jc_          38 LITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVG   95 (103)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999999999888877654

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.45  E-value=1.9e-15  Score=110.98  Aligned_cols=57  Identities=26%  Similarity=0.416  Sum_probs=53.7

Q ss_pred             ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHH
Q psy12868         92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKV  148 (302)
Q Consensus        92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~  148 (302)
                      .++|++.+|+||+++++|||||||++|.|+.||+++++|+++|++++.+.++.+++.
T Consensus        23 ~e~~s~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~~   79 (80)
T d1lnqa2          23 IEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEF   79 (80)
T ss_dssp             SSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTT
T ss_pred             HhCCCHHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456999999999999999999999999999999999999999999999999888764

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.27  E-value=7.8e-13  Score=103.33  Aligned_cols=60  Identities=23%  Similarity=0.330  Sum_probs=54.1

Q ss_pred             CccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHH
Q psy12868         91 VHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLA  150 (302)
Q Consensus        91 ~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~  150 (302)
                      ..+.|+|.+|+||+.+|+|||||||++|.|+.||+++++.+++|+.+..+.++.+...++
T Consensus        56 ~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~~~s  115 (116)
T d1p7ba2          56 NQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA  115 (116)
T ss_dssp             CSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455789999999999999999999999999999999999999999999988877765543

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.23  E-value=1.2e-12  Score=102.32  Aligned_cols=56  Identities=23%  Similarity=0.371  Sum_probs=50.1

Q ss_pred             cCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        205 NWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDV  269 (302)
Q Consensus       205 ~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~  269 (302)
                      .++|.||+||+++|+|||||||++|.+..+         ++++.+.+++|+.++++.++.+..++
T Consensus        59 ~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~---------~~~~~~~~~~g~~~~a~~~g~i~~~~  114 (116)
T d1p7ba2          59 PPGFVGAFFFSVETLATVGYGDMHPQTVYA---------HAIATLEIFVGMSGIALSTGLVFARF  114 (116)
T ss_dssp             SSSTHHHHHHHTTTTTTCCCSCCCCCSHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccccccccCCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999997655         58889999999999999999887654

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.23  E-value=9.3e-13  Score=102.85  Aligned_cols=59  Identities=22%  Similarity=0.303  Sum_probs=52.9

Q ss_pred             CccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHH
Q psy12868         91 VHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL  149 (302)
Q Consensus        91 ~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l  149 (302)
                      ..+.++|.+|+||+.+|+|||||||++|.|..||+++++.+++|+.+..+.++.+...+
T Consensus        55 ~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~~f  113 (116)
T d1xl4a2          55 NARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF  113 (116)
T ss_dssp             TSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34568999999999999999999999999999999999999999999988887765544

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.17  E-value=4.2e-12  Score=99.03  Aligned_cols=56  Identities=21%  Similarity=0.331  Sum_probs=50.2

Q ss_pred             cCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868        205 NWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDV  269 (302)
Q Consensus       205 ~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~  269 (302)
                      .++|.||+||+++|+|||||||++|.+..+         ++++.+.++.|+.+.++.++.+..++
T Consensus        58 ~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~---------r~~~~~~~~~G~~~~a~~~g~i~~~f  113 (116)
T d1xl4a2          58 PGSFTDAFFFSVQTMATIGYGKLIPIGPLA---------NTLVTLEALCGMLGLAVAASLIYARF  113 (116)
T ss_dssp             TTCHHHHHHHHHHHHTTCCCSSSCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHccCCCCccccCCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            478999999999999999999999987655         58999999999999999999887665

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.34  E-value=9.9e-06  Score=54.04  Aligned_cols=38  Identities=11%  Similarity=0.109  Sum_probs=26.6

Q ss_pred             HHHHHHHhhhhhhhhcccc-------CCcccceeeeeeeeecccc
Q psy12868        187 WVLGGYVATGTVMFAEWEN-------WPILDSCYFCVTSLCKIGI  224 (302)
Q Consensus       187 ~~~~~~~~iga~if~~~e~-------w~~~da~Yf~fitltTIGf  224 (302)
                      +++++.+.+++.+....|.       -++.||+||+++|+|||||
T Consensus        13 ~~~~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1          13 VLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeecccC
Confidence            3344444455555555562       3679999999999999998

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.60  E-value=0.00059  Score=45.13  Aligned_cols=20  Identities=30%  Similarity=0.665  Sum_probs=18.4

Q ss_pred             CCChhhhhHhhheeEEeeec
Q psy12868         94 IWSFPAALMFSLSIFTMIGY  113 (302)
Q Consensus        94 ~w~~~~a~~f~~t~~tTiGy  113 (302)
                      .=|+++|+||+++|+|||||
T Consensus        38 f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1          38 LITYPRALWWACETATTVGY   57 (57)
T ss_dssp             CCSHHHHHHHHHHHHTTCCC
T ss_pred             ccccchhhhhheeeeecccC
Confidence            45789999999999999998