Psyllid ID: psy12892

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL
Secondary Structure (PSIPRED)
cEEEcHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHccccccEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHccccEEEEEccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHccccccccccccccHHHHHHHccccEEEEc
Coil and Loop (DISEMBL)
IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGtsvdiqngegqtALHIASAEGDEALVKYFYGakanasitdhqgIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGakanasitdhqdrtpmhlaAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKginvaalggedltgrpdltvgpvQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL
Flexible Loop (DISEMBL)
IWELLSTQTAEQLkattingdtalHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAalggedltgrpDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALlstagreirmtvDGTLILyyrgkdskaqieel
Low Complexity Region (SEG)
IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL
Disordered region (IsUnstruct)
**************ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDH****PMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRG**********
Disordered Region (DISOPRED)
IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL
Disordered Region (DISEMBL)
IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL
Disordered Region (DISPRO)
IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	N/A	0.663	0.053	0.308	8e-18
Q01484	3957	Ankyrin-2 OS=Homo sapiens	yes	N/A	0.663	0.052	0.308	1e-17
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	N/A	0.698	0.050	0.309	3e-17
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	N/A	0.634	0.106	0.311	1e-16
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	N/A	0.622	0.099	0.320	2e-16
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	N/A	0.568	0.096	0.301	5e-16
Q9ERK0	786	Receptor-interacting seri	no	N/A	0.676	0.270	0.304	1e-15
P57078	832	Receptor-interacting seri	no	N/A	0.647	0.245	0.301	8e-15
Q02989	1411	Alpha-latroinsectotoxin-L	N/A	N/A	0.914	0.204	0.241	2e-14
Q9ULJ7	1429	Ankyrin repeat domain-con	no	N/A	0.707	0.156	0.3	4e-14

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 91.3 bits (225), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 103/227 (45%), Gaps = 18/227 (7%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
           A  +NG T LH+A +K  + ++ +LV YG S+      G T +H+A+  G   +V     
Sbjct: 393 ARALNGFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVAAFMGHLNIVLLLLQ 452

Query: 75  AKANASITDHQG--IQRDIAAAGTSVLANCLLMG---------EGQTALHIASAEGDEAL 123
             A+  +T+ +G       A AG   +  CLL           E QT LHIAS  G   +
Sbjct: 453 NGASPDVTNIRGETALHMAARAGQVEVVRCLLRNGALVDARAREEQTPLHIASRLGKTEI 512

Query: 124 VKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAA 183
           V+      A+         TP+H++A  G   +  +L +   A     TK+ +  LH+AA
Sbjct: 513 VQLLLQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLA-TKKGFTPLHVAA 571

Query: 184 MYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNK 224
            Y   DV KLLL ++      G      LH+AA Y  + V  LLL K
Sbjct: 572 KYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALLLLEK 618

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.
Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 103/227 (45%), Gaps = 18/227 (7%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
           A  +NG T LH+A +K  + ++ +LV YG S+      G T +H+A+  G   +V     
Sbjct: 393 ARALNGFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVAAFMGHLNIVLLLLQ 452

Query: 75  AKANASITDHQG--IQRDIAAAGTSVLANCLLMG---------EGQTALHIASAEGDEAL 123
             A+  +T+ +G       A AG   +  CLL           E QT LHIAS  G   +
Sbjct: 453 NGASPDVTNIRGETALHMAARAGQVEVVRCLLRNGALVDARAREEQTPLHIASRLGKTEI 512

Query: 124 VKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAA 183
           V+      A+         TP+H++A  G   +  +L +   A     TK+ +  LH+AA
Sbjct: 513 VQLLLQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLA-TKKGFTPLHVAA 571

Query: 184 MYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNK 224
            Y   DV KLLL ++      G      LH+AA Y  + V  LLL K
Sbjct: 572 KYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALLLLEK 618

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 113/239 (47%), Gaps = 19/239 (7%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           + ELL    A  ++A T +G T +H+AA    +++V  L+ +G S +  N  G+TALH+A
Sbjct: 415 VMELLLKHGA-SIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMA 473

Query: 61  SAEGDEALVKYFY--GAKANASITDHQGIQRDIAAAGTSVLANCLLM---------GEGQ 109
           +  G   +V+Y    GA+  A   D Q      A  G + +   LL            G 
Sbjct: 474 ARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGY 533

Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
           T LH+++ EG E +  +     A+ SIT  +  TP+H+AA+ G   +  LL  K  AS  
Sbjct: 534 TPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVANLLLQK-SASPD 592

Query: 170 ERTKENYNVLHLAAMYSREDVVKLLLNK------KGIENYNVLHLAAMYSREDVVKLLL 222
              K     LH+AA Y  + V  LLL++           Y  LH+AA  ++ D+   LL
Sbjct: 593 AAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIATTLL 651

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 107/234 (45%), Gaps = 34/234 (14%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           + ELL  +T   + A T +G T LH+A+    L +V+ L+  G S ++ N + +T LH+A
Sbjct: 386 VMELL-LKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA 444

Query: 61  SAEGDEALVKYFY--GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE 118
           +  G   + KY     AK NA   D                         QT LH A+  
Sbjct: 445 ARAGHTEVAKYLLQNKAKVNAKAKD------------------------DQTPLHCAARI 480

Query: 119 GDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNV 178
           G   +VK      AN ++      TP+H+AA  GH   +  L +K  AS    TK+ +  
Sbjct: 481 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTP 539

Query: 179 LHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKG 226
           LH+AA Y +  V +LLL      N  G      LH+A  ++  D+VKLLL + G
Sbjct: 540 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 593

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 110/234 (47%), Gaps = 38/234 (16%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           + ELL    A  ++A T +G T +H+AA    +++V  L+ +G S +  N  G+TALH+A
Sbjct: 398 VMELLLKHGA-SIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMA 456

Query: 61  SAEGDEALVKYFY--GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE 118
           +  G   +V+Y    GA+  A   D                         QT LHI++  
Sbjct: 457 ARSGQAEVVRYLVQDGAQVEAKAKD------------------------DQTPLHISARL 492

Query: 119 GDEALVKYFY--GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENY 176
           G   +V+     GA  NA+ T     TP+HLAA  GH  +   L D   AS+   TK+ +
Sbjct: 493 GKADIVQQLLQQGASPNAATT--SGYTPLHLAAREGHEDVAAFLLD-HGASLSITTKKGF 549

Query: 177 NVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNK 224
             LH+AA Y + +V  LLL K       G      LH+AA Y  + V  LLL++
Sbjct: 550 TPLHVAAKYGKLEVASLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQ 603

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 97/212 (45%), Gaps = 33/212 (15%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
           NG T LH+A    +LD+V++L+  G S       G T LHIA+ +    + +    YG  
Sbjct: 564 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGS 623

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
           ANA     + +Q                   G T LH+A+ EG   +V      +AN ++
Sbjct: 624 ANA-----ESVQ-------------------GVTPLHLAAQEGHTEMVALLLSKQANGNL 659

Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL- 195
            +    TP+HL ++ GH  + ++L  K   ++   T+  Y  LH+A+ Y    +VK LL 
Sbjct: 660 GNKSGLTPLHLVSQEGHVPVADVLI-KHGVTVDATTRMGYTPLHVASHYGNIKLVKFLLQ 718

Query: 196 -----NKKGIENYNVLHLAAMYSREDVVKLLL 222
                N K    Y+ LH AA     D+V LLL
Sbjct: 719 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 750

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 114/243 (46%), Gaps = 30/243 (12%)

Query: 14  KATTINGD-----TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEAL 68
           + T++N       TALH AA+  D    R+L++   SV+  + EG+T +H+A   G E +
Sbjct: 495 RKTSVNAKDEDQWTALHFAAQNGDEASTRLLLEKNASVNEVDFEGRTPMHVACQHGQENI 554

Query: 69  VKYFYGAKAN--------------ASITDHQGIQRDIAA-AGTSVLANCLLMGEGQTALH 113
           V+       +              A+   H  I + +A   G SV A  L   +G+T LH
Sbjct: 555 VRTLLRRGVDVGLQGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTL---DGRTPLH 611

Query: 114 IASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTK 173
           +A+  G   + +      ++ +I   Q +TP+H+AAE GH S   LL  +  A     T 
Sbjct: 612 LAAQRGHYRVARILIDLCSDVNICSLQAQTPLHVAAETGHTSTARLLLHRG-AGKEALTS 670

Query: 174 ENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGI 227
           E Y  LHLAA       VKLL+ +K      G  N   LHLAA     +VV+ L++   I
Sbjct: 671 EGYTALHLAAQNGHLATVKLLIEEKADVMARGPLNQTALHLAAARGHSEVVEELVSADLI 730

Query: 228 NVA 230
           +++
Sbjct: 731 DLS 733

Involved in stratified epithelial development (By similarity). It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P57078|RIPK4_HUMAN Receptor-interacting serine/threonine-protein kinase 4 OS=Homo sapiens GN=RIPK4 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 25/229 (10%)

Query: 22  TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
           TALH AA+  D    R+L++   SV+  + EG+T +H+A   G E +V+       + S+
Sbjct: 554 TALHFAAQNGDESSTRLLLEKNASVNEVDFEGRTPMHVACQHGQENIVRILLRRGVDVSL 613

Query: 82  TD--------------HQGIQRDIAA-AGTSVLANCLLMGEGQTALHIASAEGDEALVKY 126
                           H  I + +A   G SV A  L   +G+T LH+A+  G   + + 
Sbjct: 614 QGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTL---DGRTPLHLAAQRGHYRVARI 670

Query: 127 FYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS 186
                ++ ++     +TP+H+AAE GH S   LL  +  A     T + Y  LHLAA   
Sbjct: 671 LIDLCSDVNVCSLLAQTPLHVAAETGHTSTARLLLHRG-AGKEAMTSDGYTALHLAARNG 729

Query: 187 REDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
               VKLL+ +K      G  N   LHLAA +   +VV+ L++   I++
Sbjct: 730 HLATVKLLVEEKADVLARGPLNQTALHLAAAHGHSEVVEELVSADVIDL 778

Involved in stratified epithelial development. It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q02989|LITA_LATTR Alpha-latroinsectotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 144/335 (42%), Gaps = 47/335 (14%)

Query: 1    IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTS-VDIQNGEGQTALHI 59
            I+ LL ++ A+ +KA  IN    +H A     L++VRIL++   S ++++N   +   ++
Sbjct: 818  IFRLLLSRGAD-IKAEDINSQMPIHEAVSNGHLEIVRILIEKDPSLMNVKNIRNEYPFYL 876

Query: 60   ASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG 119
            A  +  + +  YF    AN +  DH G                       T LH+ S+ G
Sbjct: 877  AVEKRYKDIFDYFVSKDANVNEVDHNG----------------------NTLLHLFSSTG 914

Query: 120  DEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN---Y 176
            +  +V++     AN  + +++ +T   LA ENG  +I+    +K + ++    +     Y
Sbjct: 915  ELEVVQFLMQNGANFRLKNNERKTFFDLAIENGRLNIVAFAVEKNKVNLQAAHRGKTILY 974

Query: 177  NVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGED 236
            + +  +A Y + ++VK  + K      N LH AA Y+  D+VK  + ++GIN A    E+
Sbjct: 975  HAICDSAKYDKIEIVKYFIEKLNESECNPLHEAAAYAHLDLVKYFVQERGINPAEFNEEN 1034

Query: 237  LTGRPDLTV-GPVQAY---------LYQVYLISKQQTAVHLVCSRQTGTA---------T 277
                  +T+ G    Y         L  V  +S +   ++  C  Q  T           
Sbjct: 1035 QASPFCITIHGAPCGYSLDCDTPDRLEVVEYLSDKIPDINGKCDVQENTPITVAIFANKV 1094

Query: 278  SILRALLSTAGREIRMTVDGTLILYYRGKDSKAQI 312
            SIL  L+   G +    VDG   LY   +  + +I
Sbjct: 1095 SILNYLVGI-GADPNQQVDGDPPLYIAARQGRFEI 1128

Insecticidal presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). The toxin forms channels with 0.55-0.58 nm entrance diameter and a relatively small conductance in planar phospholipid membranes.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4

 Score = 79.3 bits (194), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 118/250 (47%), Gaps = 27/250 (10%)

Query: 18  INGDTALHLAA-----RKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
           ++G TAL +AA      K    +V +L+D G  VD  + +G T L +A+ EG   +V   
Sbjct: 708 VDGRTALSVAALCVPASKGHASVVSLLIDRGAEVDHCDKDGMTPLLVAAYEGHVDVVDLL 767

Query: 73  YGAKANASITDHQGIQRDIAAA--GTSVLANCLLM---------GEGQTALHIASAEGDE 121
               A+   TD+ G    +AAA  G + + N LL           EG+T L IASA+G+ 
Sbjct: 768 LEGGADVDHTDNNGRTPLLAAASMGHASVVNTLLFWGAAVDSIDSEGRTVLSIASAQGNV 827

Query: 122 ALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHL 181
            +V+       + +  D    TP+H+AA  GH  I E L ++  A   E   +      L
Sbjct: 828 EVVRTLLDRGLDENHRDDAGWTPLHMAAFEGHRLICEALIEQ-GARTNEIDNDGRIPFIL 886

Query: 182 AAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGE 235
           A+     D V++LL      +++G +  N L +AA+    D+V+LL +      A +  +
Sbjct: 887 ASQEGHYDCVQILLENKSNIDQRGYDGRNALRVAALEGHRDIVELLFSHG----ADVNCK 942

Query: 236 DLTGRPDLTV 245
           D  GRP L +
Sbjct: 943 DADGRPTLYI 952

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
380011932	1711	PREDICTED: LOW QUALITY PROTEIN: serine/t	0.520	0.095	0.463	5e-45
270014282	1823	hypothetical protein TcasGA2_TC012313 [T	0.526	0.091	0.471	1e-44
195576738	636	GD23336 [Drosophila simulans] gi|1941902	0.526	0.261	0.462	2e-44
386769136	1732	no mechanoreceptor potential C, isoform	0.526	0.095	0.462	4e-44
45552223	1712	no mechanoreceptor potential C, isoform	0.526	0.096	0.462	4e-44
221472807	1726	no mechanoreceptor potential C, isoform	0.526	0.096	0.462	4e-44
195118072	1761	GI17984 [Drosophila mojavensis] gi|19391	0.526	0.094	0.462	4e-44
195388509	1716	GJ19559 [Drosophila virilis] gi|19414937	0.526	0.096	0.462	4e-44
195473883	1755	GE25396 [Drosophila yakuba] gi|194175322	0.526	0.094	0.462	4e-44
198476772	1756	GA25465 [Drosophila pseudoobscura pseudo	0.526	0.094	0.462	4e-44

>gi|380011932|ref|XP_003690046.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Apis florea]

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 107/231 (46%), Positives = 132/231 (57%), Gaps = 67/231 (29%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           ELL+ Q  +QL+ATT  GD+ALHLAAR+RD+DMVRILVDYG                   
Sbjct: 235 ELLAQQAPDQLRATTTTGDSALHLAARRRDIDMVRILVDYG------------------- 275

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
                                           GT  + N    G+GQTALHIASAEGDE 
Sbjct: 276 --------------------------------GTVDMQN----GDGQTALHIASAEGDET 299

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
           LVKYFYG +A+ASITDHQDRTPMHLAAENGHASIIELLADKF+ASIFERTK+   ++H+A
Sbjct: 300 LVKYFYGVRASASITDHQDRTPMHLAAENGHASIIELLADKFKASIFERTKDGSTLMHIA 359

Query: 183 AMYSREDVVKLLL---------NKKGIENYNVLHLAAMYSREDVVKLLLNK 224
           ++    +   +L          NK+G  +   +H AA Y    ++  LL +
Sbjct: 360 SLNGHSECATMLFKKAXYLHMPNKRGARS---IHTAAKYGHVGIISTLLQR 407

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014282|gb|EFA10730.1| hypothetical protein TcasGA2_TC012313 [Tribolium castaneum]

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/229 (47%), Positives = 133/229 (58%), Gaps = 63/229 (27%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           ELLS QTAEQLKA   NGDTALHLA R++D+DMVRILVDYGTSVDI+NGEGQT LHIA+A
Sbjct: 237 ELLSAQTAEQLKAAAANGDTALHLAVRRKDIDMVRILVDYGTSVDIRNGEGQTPLHIAAA 296

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
           EGDEALVKYFYG +A+AS+TD+Q                       +T +H         
Sbjct: 297 EGDEALVKYFYGVRASASVTDNQ----------------------DRTPMH--------- 325

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
                                   LAAENGHA+IIELLADKF+ASIFERTK+   ++H+A
Sbjct: 326 ------------------------LAAENGHANIIELLADKFKASIFERTKDGSTLMHIA 361

Query: 183 AMYSREDVVKLLLNKKGI-------ENYNVLHLAAMYSREDVVKLLLNK 224
           ++    D   +L  KKG+       +    +H AA Y    ++  LL K
Sbjct: 362 SLNGHADCAAMLF-KKGVYLHMPNKDGARSIHTAARYGHVGIINTLLQK 409

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195576738|ref|XP_002078231.1| GD23336 [Drosophila simulans] gi|194190240|gb|EDX03816.1| GD23336 [Drosophila simulans]

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 133/229 (58%), Gaps = 63/229 (27%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           ELL+ QTAEQLKATT NGDTALHLAAR+RD+DMVRILVDYGT+VD QNGEGQT LHIA+A
Sbjct: 251 ELLAAQTAEQLKATTANGDTALHLAARRRDVDMVRILVDYGTNVDTQNGEGQTPLHIAAA 310

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
           EGDEAL+KYFYG +A+ASI D+Q                       +T +H         
Sbjct: 311 EGDEALLKYFYGVRASASIADNQ----------------------DRTPMH--------- 339

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
                                   LAAENGHA +IE+LADKF+ASIFERTK+   ++H+A
Sbjct: 340 ------------------------LAAENGHAHVIEILADKFKASIFERTKDGSTLMHIA 375

Query: 183 AMYSREDVVKLLLNKKGI-------ENYNVLHLAAMYSREDVVKLLLNK 224
           ++    +   +L  KKG+       +    +H AA Y    ++  LL K
Sbjct: 376 SLNGHAECATMLF-KKGVYLHMPNKDGARSIHTAAAYGHTGIINTLLQK 423

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386769136|ref|NP_001245891.1| no mechanoreceptor potential C, isoform E [Drosophila melanogaster] gi|301344460|gb|ADK73985.1| no mechanoreceptor potential C isoform L [Drosophila melanogaster] gi|383291340|gb|AFH03565.1| no mechanoreceptor potential C, isoform E [Drosophila melanogaster]

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 133/229 (58%), Gaps = 63/229 (27%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           ELL+ QTAEQLKATT NGDTALHLAAR+RD+DMVRILVDYGT+VD QNGEGQT LHIA+A
Sbjct: 251 ELLAAQTAEQLKATTANGDTALHLAARRRDVDMVRILVDYGTNVDTQNGEGQTPLHIAAA 310

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
           EGDEAL+KYFYG +A+ASI D+Q                       +T +H         
Sbjct: 311 EGDEALLKYFYGVRASASIADNQ----------------------DRTPMH--------- 339

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
                                   LAAENGHA +IE+LADKF+ASIFERTK+   ++H+A
Sbjct: 340 ------------------------LAAENGHAHVIEILADKFKASIFERTKDGSTLMHIA 375

Query: 183 AMYSREDVVKLLLNKKGI-------ENYNVLHLAAMYSREDVVKLLLNK 224
           ++    +   +L  KKG+       +    +H AA Y    ++  LL K
Sbjct: 376 SLNGHAECATMLF-KKGVYLHMPNKDGARSIHTAAAYGHTGIINTLLQK 423

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552223|ref|NP_995634.1| no mechanoreceptor potential C, isoform B [Drosophila melanogaster] gi|45445013|gb|AAS64642.1| no mechanoreceptor potential C, isoform B [Drosophila melanogaster]

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 133/229 (58%), Gaps = 63/229 (27%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           ELL+ QTAEQLKATT NGDTALHLAAR+RD+DMVRILVDYGT+VD QNGEGQT LHIA+A
Sbjct: 251 ELLAAQTAEQLKATTANGDTALHLAARRRDVDMVRILVDYGTNVDTQNGEGQTPLHIAAA 310

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
           EGDEAL+KYFYG +A+ASI D+Q                       +T +H         
Sbjct: 311 EGDEALLKYFYGVRASASIADNQ----------------------DRTPMH--------- 339

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
                                   LAAENGHA +IE+LADKF+ASIFERTK+   ++H+A
Sbjct: 340 ------------------------LAAENGHAHVIEILADKFKASIFERTKDGSTLMHIA 375

Query: 183 AMYSREDVVKLLLNKKGI-------ENYNVLHLAAMYSREDVVKLLLNK 224
           ++    +   +L  KKG+       +    +H AA Y    ++  LL K
Sbjct: 376 SLNGHAECATMLF-KKGVYLHMPNKDGARSIHTAAAYGHTGIINTLLQK 423

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221472807|ref|NP_001097089.2| no mechanoreceptor potential C, isoform D [Drosophila melanogaster] gi|220901951|gb|ABV53627.2| no mechanoreceptor potential C, isoform D [Drosophila melanogaster]

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 133/229 (58%), Gaps = 63/229 (27%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           ELL+ QTAEQLKATT NGDTALHLAAR+RD+DMVRILVDYGT+VD QNGEGQT LHIA+A
Sbjct: 251 ELLAAQTAEQLKATTANGDTALHLAARRRDVDMVRILVDYGTNVDTQNGEGQTPLHIAAA 310

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
           EGDEAL+KYFYG +A+ASI D+Q                       +T +H         
Sbjct: 311 EGDEALLKYFYGVRASASIADNQ----------------------DRTPMH--------- 339

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
                                   LAAENGHA +IE+LADKF+ASIFERTK+   ++H+A
Sbjct: 340 ------------------------LAAENGHAHVIEILADKFKASIFERTKDGSTLMHIA 375

Query: 183 AMYSREDVVKLLLNKKGI-------ENYNVLHLAAMYSREDVVKLLLNK 224
           ++    +   +L  KKG+       +    +H AA Y    ++  LL K
Sbjct: 376 SLNGHAECATMLF-KKGVYLHMPNKDGARSIHTAAAYGHTGIINTLLQK 423

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195118072|ref|XP_002003564.1| GI17984 [Drosophila mojavensis] gi|193914139|gb|EDW13006.1| GI17984 [Drosophila mojavensis]

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 133/229 (58%), Gaps = 63/229 (27%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           ELL+ QTAEQLKATT NGDTALHLAAR+RD+DMVRILVDYGT+VD QNGEGQT LHIA+A
Sbjct: 256 ELLAAQTAEQLKATTANGDTALHLAARRRDVDMVRILVDYGTNVDTQNGEGQTPLHIAAA 315

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
           EGDEAL+KYFYG +A+ASI D+Q                       +T +H         
Sbjct: 316 EGDEALLKYFYGVRASASIADNQ----------------------DRTPMH--------- 344

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
                                   LAAENGHA +IE+LADKF+ASIFERTK+   ++H+A
Sbjct: 345 ------------------------LAAENGHAHVIEILADKFKASIFERTKDGSTLMHIA 380

Query: 183 AMYSREDVVKLLLNKKGI-------ENYNVLHLAAMYSREDVVKLLLNK 224
           ++    +   +L  KKG+       +    +H AA Y    ++  LL K
Sbjct: 381 SLNGHAECATMLF-KKGVYLHMPNKDGARSIHTAAAYGHTGIINTLLQK 428

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195388509|ref|XP_002052922.1| GJ19559 [Drosophila virilis] gi|194149379|gb|EDW65077.1| GJ19559 [Drosophila virilis]

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 133/229 (58%), Gaps = 63/229 (27%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           ELL+ QTAEQLKATT NGDTALHLAAR+RD+DMVRILVDYGT+VD QNGEGQT LHIA+A
Sbjct: 257 ELLAAQTAEQLKATTANGDTALHLAARRRDVDMVRILVDYGTNVDTQNGEGQTPLHIAAA 316

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
           EGDEAL+KYFYG +A+ASI D+Q                       +T +H         
Sbjct: 317 EGDEALLKYFYGVRASASIADNQ----------------------DRTPMH--------- 345

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
                                   LAAENGHA +IE+LADKF+ASIFERTK+   ++H+A
Sbjct: 346 ------------------------LAAENGHAHVIEILADKFKASIFERTKDGSTLMHIA 381

Query: 183 AMYSREDVVKLLLNKKGI-------ENYNVLHLAAMYSREDVVKLLLNK 224
           ++    +   +L  KKG+       +    +H AA Y    ++  LL K
Sbjct: 382 SLNGHAECATMLF-KKGVYLHMPNKDGARSIHTAAAYGHTGIINTLLQK 429

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195473883|ref|XP_002089221.1| GE25396 [Drosophila yakuba] gi|194175322|gb|EDW88933.1| GE25396 [Drosophila yakuba]

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 133/229 (58%), Gaps = 63/229 (27%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           ELL+ QTAEQLKATT NGDTALHLAAR+RD+DMVRILVDYGT+VD QNGEGQT LHIA+A
Sbjct: 251 ELLAAQTAEQLKATTANGDTALHLAARRRDVDMVRILVDYGTNVDTQNGEGQTPLHIAAA 310

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
           EGDEAL+KYFYG +A+ASI D+Q                       +T +H         
Sbjct: 311 EGDEALLKYFYGVRASASIADNQ----------------------DRTPMH--------- 339

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
                                   LAAENGHA +IE+LADKF+ASIFERTK+   ++H+A
Sbjct: 340 ------------------------LAAENGHAHVIEILADKFKASIFERTKDGSTLMHIA 375

Query: 183 AMYSREDVVKLLLNKKGI-------ENYNVLHLAAMYSREDVVKLLLNK 224
           ++    +   +L  KKG+       +    +H AA Y    ++  LL K
Sbjct: 376 SLNGHAECATMLF-KKGVYLHMPNKDGARSIHTAAAYGHTGIINTLLQK 423

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198476772|ref|XP_002132444.1| GA25465 [Drosophila pseudoobscura pseudoobscura] gi|198137846|gb|EDY69846.1| GA25465 [Drosophila pseudoobscura pseudoobscura]

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 133/229 (58%), Gaps = 63/229 (27%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           ELLS QTA+QLKATT NGDTALHLAAR+RD+DMVRILVDYGT+VD QNGEGQT LHIA+A
Sbjct: 253 ELLSAQTADQLKATTANGDTALHLAARRRDVDMVRILVDYGTNVDTQNGEGQTPLHIAAA 312

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
           EGDEAL+KYFYG +A+ASI D+Q                       +T +H         
Sbjct: 313 EGDEALLKYFYGVRASASIADNQ----------------------DRTPMH--------- 341

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
                                   LAAENGHA +IE+LADKF+ASIFERTK+   ++H+A
Sbjct: 342 ------------------------LAAENGHAHVIEILADKFKASIFERTKDGSTLMHIA 377

Query: 183 AMYSREDVVKLLLNKKGI-------ENYNVLHLAAMYSREDVVKLLLNK 224
           ++    +   +L  KKG+       +    +H AA Y    ++  LL K
Sbjct: 378 SLNGHAECATMLF-KKGVYLHMPNKDGARSIHTAAAYGHTGIINTLLQK 425

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
FB|FBgn0016920	1726	nompC "no mechanoreceptor pote	0.609	0.111	0.478	2.7e-37
ZFIN|ZDB-GENE-030728-7	1614	trpn1 "transient receptor pote	0.609	0.118	0.368	1.4e-26
ZFIN|ZDB-GENE-091113-6	1923	si:ch211-263m18.3 "si:ch211-26	0.669	0.109	0.336	3.7e-21
ZFIN|ZDB-GENE-060621-1	3980	ank3a "ankyrin 3a" [Danio reri	0.930	0.073	0.297	5.2e-21
ZFIN|ZDB-GENE-081104-19	1929	si:ch211-173b16.3 "si:ch211-17	0.660	0.107	0.328	4.3e-20
FB|FBgn0011747	1549	Ank "Ankyrin" [Drosophila mela	0.692	0.140	0.308	1.1e-19
UNIPROTKB|P16157	1881	ANK1 "Ankyrin-1" [Homo sapiens	0.660	0.110	0.327	1.4e-19
UNIPROTKB|F1MY81	1136	ANK1 "Uncharacterized protein"	0.657	0.182	0.308	8.5e-19
UNIPROTKB|J9NTH2	2063	ANK2 "Uncharacterized protein"	0.704	0.107	0.307	1.4e-18
RGD|620156	843	Ank2 "ankyrin 2, neuronal" [Ra	0.704	0.263	0.330	1.5e-18

FB|FBgn0016920 nompC "no mechanoreceptor potential C" [Drosophila melanogaster (taxid:7227)]

 Score = 415 (151.1 bits), Expect = 2.7e-37, P = 2.7e-37
 Identities = 98/205 (47%), Positives = 122/205 (59%)

Query:     3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
             ELL+ QTAEQLKATT NGDTALHLAAR+RD+DMVRILVDYGT+VD QNGEGQT LHIA+A
Sbjct:   251 ELLAAQTAEQLKATTANGDTALHLAARRRDVDMVRILVDYGTNVDTQNGEGQTPLHIAAA 310

Query:    63 EGDEALVKYFYGAKANASITDHQG-IQRDIAAAG-----TSVLANCLLMG------EGQT 110
             EGDEAL+KYFYG +A+ASI D+Q      +AA         +LA+           +G T
Sbjct:   311 EGDEALLKYFYGVRASASIADNQDRTPMHLAAENGHAHVIEILADKFKASIFERTKDGST 370

Query:   111 ALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFE 170
              +HIAS  G        +       + +      +H AA  GH  II  L  K    +  
Sbjct:   371 LMHIASLNGHAECATMLFKKGVYLHMPNKDGARSIHTAAAYGHTGIINTLLQKGE-KVDV 429

Query:   171 RTKENYNVLHLAAMYSREDVVKLLL 195
              T +NY  LH+A   ++  VV+ LL
Sbjct:   430 TTNDNYTALHIAVESAKPAVVETLL 454

GO:0005262 "calcium channel activity" evidence=IEA;ISS

GO:0006816 "calcium ion transport" evidence=ISS

GO:0007638 "mechanosensory behavior" evidence=IMP

GO:0005216 "ion channel activity" evidence=ISS

GO:0008381 "mechanically-gated ion channel activity" evidence=NAS;TAS

GO:0050954 "sensory perception of mechanical stimulus" evidence=NAS

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0030506 "ankyrin binding" evidence=NAS

GO:0050974 "detection of mechanical stimulus involved in sensory perception" evidence=TAS

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005929 "cilium" evidence=IDA

GO:0040011 "locomotion" evidence=IMP

GO:0050975 "sensory perception of touch" evidence=IMP

ZFIN|ZDB-GENE-030728-7 trpn1 "transient receptor potential cation channel, subfamily N, member 1" [Danio rerio (taxid:7955)]

 Score = 314 (115.6 bits), Expect = 1.4e-26, P = 1.4e-26
 Identities = 76/206 (36%), Positives = 114/206 (55%)

Query:     3 ELLSTQTAEQLKAT-TINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIAS 61
             ELLS+Q+  Q++A  T NGDTALH+  R+RD++M +ILV++G + D QN EGQT LHIA+
Sbjct:   169 ELLSSQSEPQIRAAKTANGDTALHICCRRRDVEMAKILVEFGANPDSQNDEGQTPLHIAA 228

Query:    62 AEGDEALVKYFYGAKANASITD-------HQGIQR---DIAAAGTSVLANCLLMG--EGQ 109
              EGDE ++K+ Y  KANA+I+D       H   +R   ++    T    +C+L    +G 
Sbjct:   229 HEGDENMLKFLYLCKANANISDKMDRSPLHIAAERGHTNVVEILTEKFRSCVLARTKDGN 288

Query:   110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
             T LHIAS  G       F        + +      +H AA+ GH ++++ L  K  A + 
Sbjct:   289 TLLHIASQCGHPTTALSFLRKGVPLHMPNKSGAVCLHAAAKRGHTAVVKALLQK-GAHVD 347

Query:   170 ERTKENYNVLHLAAMYSREDVVKLLL 195
                ++    LH+A    R  VV++LL
Sbjct:   348 AAARDGQTALHIAVENCRPQVVQMLL 373

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

GO:0008381 "mechanically-gated ion channel activity" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0050910 "detection of mechanical stimulus involved in sensory perception of sound" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-091113-6 si:ch211-263m18.3 "si:ch211-263m18.3" [Danio rerio (taxid:7955)]

 Score = 264 (98.0 bits), Expect = 3.7e-21, P = 3.7e-21
 Identities = 77/229 (33%), Positives = 110/229 (48%)

Query:    15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY- 73
             A  +NG T LH+A +K  +  + +L+ +  S++     G T LH+A+  G   +VK    
Sbjct:   399 ARALNGFTPLHIACKKNHMRSMDLLLKHSASLEAVTESGLTPLHVAAFMGHLNIVKSLLQ 458

Query:    74 -GAKANASITDHQGIQRDIAAAGTSVLANCLLMG---------EGQTALHIASAEGDEAL 123
              GA  NAS    +      A AG   +A  LL           + QT LH A+  G + L
Sbjct:   459 RGASPNASNVKVETPLHMAARAGHCEVAQFLLQNNAQVDAKAKDDQTPLHCAARMGHKEL 518

Query:   124 VKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAA 183
             VK     KAN         TP+H+AA  GHA    +L D+  A   + TK+ +  LH+A 
Sbjct:   519 VKLLMEHKANPDSATTAGHTPLHIAAREGHAQTTRILLDE-NAQQTKMTKKGFTPLHVAC 577

Query:   184 MYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKG 226
              Y + DVV+LLL      N  G      LH+A  ++  DVVKLL++K G
Sbjct:   578 KYGKVDVVELLLERGANPNAAGKNGLTPLHVAVHHNNLDVVKLLVSKGG 626

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-060621-1 ank3a "ankyrin 3a" [Danio rerio (taxid:7955)]

 Score = 266 (98.7 bits), Expect = 5.2e-21, P = 5.2e-21
 Identities = 95/319 (29%), Positives = 150/319 (47%)

Query:    15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
             A  +NG T LH+A +K  + ++ +L+ +G S+      G T +H+A+  G E +VK    
Sbjct:   358 AKALNGFTPLHIACKKNRVKVMELLLKHGASLQAVTESGLTPIHVAAFMGHENIVKQLTH 417

Query:    73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFY--GA 130
             +GA  N +    +      A AG   +   LL   G   LHIAS  G   +V+     GA
Sbjct:   418 HGASPNTTNVRGETALHMAARAGQIDVVRYLLQN-GAKVLHIASRLGKLEIVQQLLQKGA 476

Query:   131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV 190
               NA+ T     TP+HL+A  GH  I  LL ++  +S+   TK+ +  LH+AA Y + +V
Sbjct:   477 LPNAATTSGY--TPLHLSAREGHQEIAALLLEQ-GSSLSAATKKGFTPLHVAAKYGQLEV 533

Query:   191 VKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGI--NVAALGGEDL---TG 239
               LLL KK      G      LH+AA Y  + V  LLL++     + A  G   L     
Sbjct:   534 ANLLLQKKAAPDAAGKSGLTPLHVAAHYDNQRVALLLLDQGASPHSPAKNGYTPLHIAAK 593

Query:   240 RPDLTVGP-VQAYLYQVYLISKQQTA-VHLVCSRQTGTATSILRALLSTAGREIRM-TVD 296
             +  L +G  +  Y  +   +++Q  + +HL    Q G+   +  +LL T    + M   +
Sbjct:   594 KNQLEIGTTLLEYGAECNTVTRQGISPLHLAA--QEGSVDLV--SLLLTKQANVNMGNKN 649

Query:   297 GTLILYYRGKDSKAQIEEL 315
             G   L+   +D KA + E+
Sbjct:   650 GLTPLHLAAQDDKAGVTEV 668

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-081104-19 si:ch211-173b16.3 "si:ch211-173b16.3" [Danio rerio (taxid:7955)]

 Score = 254 (94.5 bits), Expect = 4.3e-20, P = 4.3e-20
 Identities = 74/225 (32%), Positives = 109/225 (48%)

Query:    18 INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY--GA 75
             +NG T LH+A +K  + ++ +L+ +  S++     G T LH++S  G   +VK     GA
Sbjct:   363 LNGFTPLHIACKKNHMRVMDLLLKHSASLEAVTESGLTPLHVSSFMGHLNIVKILMQKGA 422

Query:    76 KANASITDHQGIQRDIAAAGTS----VLANCLLMG----EGQTALHIASAEGDEALVKYF 127
               NAS    +      + AG      +L N   +     + QT LH AS  G   +VK  
Sbjct:   423 SPNASNVKVETPLHMASRAGHCEVEFLLQNAAPVDAKAKDDQTPLHCASRMGHNEMVKLL 482

Query:   128 YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSR 187
                KAN++ T     TP+H+AA  GH     +L D   A + + TK+ +  LH+AA Y +
Sbjct:   483 LEHKANSNSTTTAGHTPLHIAAREGHTQTASILLD-MNAQLTKMTKKGFTPLHVAAKYGK 541

Query:   188 EDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKG 226
              DV  LLL      N  G      LH+A  ++  DVV LLL+K G
Sbjct:   542 VDVAVLLLERGANPNAAGKVGLTPLHVAVHHNNLDVVNLLLSKGG 586

GO:0007165 "signal transduction" evidence=IEA

FB|FBgn0011747 Ank "Ankyrin" [Drosophila melanogaster (taxid:7227)]

 Score = 249 (92.7 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 74/240 (30%), Positives = 122/240 (50%)

Query:    15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
             A  +NG T LH+A +K  + MV +L+ +G ++      G T LH+AS  G   +V Y   
Sbjct:   394 ARALNGFTPLHIACKKNRIKMVELLIKHGANIGATTESGLTPLHVASFMGCINIVIYLLQ 453

Query:    75 AKANASITDHQG-IQRDIAA-AGTSVLANCLLMG--------EGQTALHIASAEGDEALV 124
              +A+A +   +G     +AA A  + +   LL          EGQT LH+AS  G+  ++
Sbjct:   454 HEASADLPTIRGETPLHLAARANQADIIRILLRSAKVDAIAREGQTPLHVASRLGNINII 513

Query:   125 KYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
                  +GA+ NA   D    + +H+AA+ G  +I+++L +   A     TK+ +  LHLA
Sbjct:   514 MLLLQHGAEINAQSNDKY--SALHIAAKEGQENIVQVLLEN-GAENNAVTKKGFTPLHLA 570

Query:   183 AMYSREDVVKLLLNK------KGIENYNVLHLAAMYSREDVVKLLL-NKKGINVAALGGE 235
               Y +++VV++LL        +G  +   LH+A  Y+   +V+LLL N    N+ A  G+
Sbjct:   571 CKYGKQNVVQILLQNGASIDFQGKNDVTPLHVATHYNNPSIVELLLKNGSSPNLCARNGQ 630

GO:0045170 "spectrosome" evidence=IDA;TAS

GO:0045169 "fusome" evidence=NAS;IDA

GO:0007016 "cytoskeletal anchoring at plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|P16157 ANK1 "Ankyrin-1" [Homo sapiens (taxid:9606)]

 Score = 249 (92.7 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 74/226 (32%), Positives = 107/226 (47%)

Query:    18 INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY--GA 75
             +NG T LH+A +K  + ++ +L+  G S+D     G T LH+AS  G   +VK     GA
Sbjct:   369 LNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGA 428

Query:    76 KANASITDHQGIQRDIAAAGTSVLANCLLMGEG---------QTALHIASAEGDEALVKY 126
               N S    +      A AG + +A  LL  +          QT LH A+  G   +VK 
Sbjct:   429 SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL 488

Query:   127 FYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS 186
                  AN ++      TP+H+AA  GH   +  L +K  AS    TK+ +  LH+AA Y 
Sbjct:   489 LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYG 547

Query:   187 REDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKG 226
             +  V +LLL      N  G      LH+A  ++  D+VKLLL + G
Sbjct:   548 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 593

GO:0007165 "signal transduction" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0005198 "structural molecule activity" evidence=NAS

GO:0007010 "cytoskeleton organization" evidence=NAS

GO:0030507 "spectrin binding" evidence=IDA;NAS;IPI

GO:0016323 "basolateral plasma membrane" evidence=NAS

GO:0008093 "cytoskeletal adaptor activity" evidence=IDA;TAS

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=TAS;IPI

GO:0005856 "cytoskeleton" evidence=NAS

GO:0006887 "exocytosis" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0014731 "spectrin-associated cytoskeleton" evidence=IDA

GO:0051117 "ATPase binding" evidence=IPI

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

UNIPROTKB|F1MY81 ANK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 239 (89.2 bits), Expect = 8.5e-19, P = 8.5e-19
 Identities = 70/227 (30%), Positives = 112/227 (49%)

Query:    18 INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
             +NG T LH+A +K  + ++ +L+  G S+D     G T LH+AS  G   +VK     +A
Sbjct:   368 LNGFTPLHIACKKNHIRVMELLLKMGASIDAVTESGLTPLHVASFMGHLPIVKSLLQREA 427

Query:    78 NASITDHQGIQRDI---AAAGTSVLANCLLMGEG---------QTALHIASAEGDEALVK 125
             + ++++ + ++  +   A AG + +A  LL  +          QT LH A+  G   +VK
Sbjct:   428 SPNVSNVK-VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK 486

Query:   126 YFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMY 185
                   AN ++      TP+H+AA  GH      L +K  AS    TK+ +  LH+AA Y
Sbjct:   487 LLLENNANPNLATTAGHTPLHIAAREGHVETALALLEK-EASQTCMTKKGFTPLHVAAKY 545

Query:   186 SREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKG 226
              +  + +LLL      N  G      LH+A  ++  DVV+LLL + G
Sbjct:   546 GKVRMAELLLEHDAHPNAAGKSGLTPLHVAVHHNHLDVVRLLLPRGG 592

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|J9NTH2 ANK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 240 (89.5 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 74/241 (30%), Positives = 111/241 (46%)

Query:     1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
             + +LL  + A    A  +NG T LH+A +K  + ++ +LV YG S+      G T +H+A
Sbjct:   397 VTKLLLDKRANP-NARALNGFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVA 455

Query:    61 SAEGDEALVKYFYGAKANASITDHQG-IQRDIAA-AGTSVLANCLLMG---------EGQ 109
             +  G   +V       A+  +T+ +G     +AA AG   +  CLL           E Q
Sbjct:   456 AFMGHLNIVLLLLQNGASPDVTNIRGETALHMAARAGQVEVVRCLLRNGALVDARAREEQ 515

Query:   110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
             T LHIAS  G   +V+      A+         TP+H++A  G   +  +L +   A   
Sbjct:   516 TPLHIASRLGKTEIVQLLLQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSL 575

Query:   170 ERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLN 223
               TK+ +  LH+AA Y   DV KLLL ++      G      LH+AA Y  + V  LLL 
Sbjct:   576 A-TKKGFTPLHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALLLLE 634

Query:   224 K 224
             K
Sbjct:   635 K 635

GO:0007165 "signal transduction" evidence=IEA

RGD|620156 Ank2 "ankyrin 2, neuronal" [Rattus norvegicus (taxid:10116)]

 Score = 235 (87.8 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 81/245 (33%), Positives = 118/245 (48%)

Query:     4 LLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAE 63
             LL  Q       T I G+TALH+AAR  ++++VR L+  G  VD +  E QT LHIAS  
Sbjct:   413 LLLLQNGASPDVTNIRGETALHMAARAGEVEVVRCLLRNGALVDARAREEQTPLHIASRL 472

Query:    64 GDEALVKYF--YGAKANASITD-----H----QGIQRDIAAAGTSV-LANCLLMGEGQTA 111
             G   +V+    + A  +A+ T+     H    +G Q D+A+       A+ L   +G T 
Sbjct:   473 GKTEIVQLLLQHMAHPDAATTNGYTPLHISAREG-QVDVASVLLEAGAAHSLATKKGFTP 531

Query:   112 LHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFER 171
             LH+A+  G   + K     +A A        TP+H+AA   +  +  LL +K  AS    
Sbjct:   532 LHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALLLLEK-GASPHAT 590

Query:   172 TKENYNVLHLAAMYSREDVVKLLLNKKGIENYNV-------LHLAAMYSREDVVKLLLNK 224
              K  Y  LH+AA  ++  +   LLN  G E   V       LHLA+     D+V L+L +
Sbjct:   591 AKNGYTPLHIAAKKNQMQIASTLLNY-GAETNTVTKQGVTPLHLASQEGHTDMVTLVL-E 648

Query:   225 KGINV 229
             KG N+
Sbjct:   649 KGANI 653

GO:0002027 "regulation of heart rate" evidence=ISO

GO:0003283 "atrial septum development" evidence=ISO

GO:0005200 "structural constituent of cytoskeleton" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO

GO:0007399 "nervous system development" evidence=IEP

GO:0008104 "protein localization" evidence=ISO

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0010881 "regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion" evidence=ISO

GO:0010882 "regulation of cardiac muscle contraction by calcium ion signaling" evidence=ISO

GO:0014704 "intercalated disc" evidence=ISO

GO:0015459 "potassium channel regulator activity" evidence=ISO

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030018 "Z disc" evidence=ISO

GO:0030315 "T-tubule" evidence=ISO

GO:0030507 "spectrin binding" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=ISO

GO:0030913 "paranodal junction assembly" evidence=IEP

GO:0031430 "M band" evidence=ISO

GO:0031672 "A band" evidence=ISO

GO:0033292 "T-tubule organization" evidence=ISO

GO:0033365 "protein localization to organelle" evidence=ISO

GO:0034394 "protein localization to cell surface" evidence=ISO

GO:0034613 "cellular protein localization" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043034 "costamere" evidence=ISO

GO:0043268 "positive regulation of potassium ion transport" evidence=ISO

GO:0044325 "ion channel binding" evidence=ISO

GO:0045121 "membrane raft" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050821 "protein stabilization" evidence=ISO

GO:0051117 "ATPase binding" evidence=ISO

GO:0051279 "regulation of release of sequestered calcium ion into cytosol" evidence=ISO

GO:0051597 "response to methylmercury" evidence=IEP

GO:0051924 "regulation of calcium ion transport" evidence=ISO

GO:0051928 "positive regulation of calcium ion transport" evidence=ISO

GO:0055117 "regulation of cardiac muscle contraction" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO

GO:0060307 "regulation of ventricular cardiac muscle cell membrane repolarization" evidence=ISO

GO:0070972 "protein localization to endoplasmic reticulum" evidence=ISO

GO:0072659 "protein localization to plasma membrane" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

GO:0086004 "regulation of cardiac muscle cell contraction" evidence=ISO

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=ISO

GO:0086014 "regulation of atrial cardiac muscle cell action potential" evidence=ISO

GO:0086015 "regulation of SA node cell action potential" evidence=ISO

GO:0086036 "regulation of cardiac muscle cell membrane potential" evidence=ISO

GO:0086066 "atrial cardiac muscle cell to AV node cell communication" evidence=ISO

GO:0086070 "SA node cell to atrial cardiac muscle cell communication" evidence=ISO

GO:0086091 "regulation of heart rate by cardiac conduction" evidence=ISO

GO:1901018 "positive regulation of potassium ion transmembrane transporter activity" evidence=ISO

GO:1901019 "regulation of calcium ion transmembrane transporter activity" evidence=ISO

GO:1901021 "positive regulation of calcium ion transmembrane transporter activity" evidence=ISO

GO:2001257 "regulation of cation channel activity" evidence=ISO

GO:2001259 "positive regulation of cation channel activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	315
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-14
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	9e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-06
smart00248	30	smart00248, ANK, ankyrin repeats	4e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	4e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	6e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	8e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	5e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	9e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 99.4 bits (248), Expect = 7e-26
 Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 22/146 (15%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
           A   +G T LHLAA    L++V++L++ G  V+ ++ +G+T LH+A+  G   +VK    
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
             A+ +  D                       +G T LH+A+  G+  +VK      A+ 
Sbjct: 62  KGADVNARDK----------------------DGNTPLHLAARNGNLDVVKLLLKHGADV 99

Query: 135 SITDHQDRTPMHLAAENGHASIIELL 160
           +  D   RTP+HLAA+NGH  +++LL
Sbjct: 100 NARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 98.6 bits (246), Expect = 1e-25
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 7/122 (5%)

Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
           +G+T LH+A++ G   +VK      A+ +  D+  RTP+HLAA+NGH  I++LL +K  A
Sbjct: 6   DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK-GA 64

Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKL 220
            +  R K+    LHLAA     DVVKLLL      N +  +    LHLAA     +VVKL
Sbjct: 65  DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKL 124

Query: 221 LL 222
           LL
Sbjct: 125 LL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 97.8 bits (244), Expect = 3e-25
 Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 23/149 (15%)

Query: 47  DIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMG 106
           + ++ +G+T LH+A++ G   +VK      A+ +  D+                      
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN---------------------- 38

Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
           +G+T LH+A+  G   +VK      A+ +  D    TP+HLAA NG+  +++LL     A
Sbjct: 39  DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH-GA 97

Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLL 195
            +  R K+    LHLAA     +VVKLLL
Sbjct: 98  DVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 76.3 bits (188), Expect = 3e-17
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 136 ITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
             D   RTP+HLAA NGH  +++LL +   A +  +  +    LHLAA     ++VKLLL
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 196 ------NKKGIENYNVLHLAAMYSREDVVKLLLNK 224
                 N +  +    LHLAA     DVVKLLL  
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH 95

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 112 LHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFER 171
           LH+A+  G+  LVK     +  A +      T +HLAA NG+  I++LL +   A +  +
Sbjct: 1   LHLAAKNGNLELVKLL--LEKGADVNLGDTDTALHLAARNGNLEIVKLLLEH-GADVNAK 57

Query: 172 TKENYNVLHLAAMYSREDVVKLLLNK 197
            K+    LHLAA     ++VKLLL  
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 69.1 bits (168), Expect = 1e-13
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 14/145 (9%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
           +G   LH AA K D  +V++L+  G  V+ ++ +G T LH+A+  G+             
Sbjct: 72  DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIE------ 125

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
                   + + +  AG  +  N L   +G T LH A+  GD  +V+    A A+ +  +
Sbjct: 126 --------VAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRN 177

Query: 139 HQDRTPMHLAAENGHASIIELLADK 163
               T +  AA+NG   +++LL DK
Sbjct: 178 SYGVTALDPAAKNGRIELVKLLLDK 202

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 25/63 (39%), Positives = 44/63 (69%)

Query: 21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANAS 80
          DTALHLAAR  +L++V++L+++G  V+ ++ +G TALH+A+  G+  +VK      A+ +
Sbjct: 29 DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Query: 81 ITD 83
          + D
Sbjct: 89 LKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 146 HLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKG 199
           HLAA+NG+  +++LL +K  A +     +    LHLAA     ++VKLLL      N K 
Sbjct: 2   HLAAKNGNLELVKLLLEK-GADV--NLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 200 IENYNVLHLAAMYSREDVVKLLLNKKGINV 229
            +    LHLAA     ++VKLLL + G ++
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLL-EHGADI 87

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 64.6 bits (157), Expect = 1e-11
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 33/232 (14%)

Query: 13  LKATTING-DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
           +K    NG DT++ L     + DM++ ++D G  V+I++ E +T LH A  +GD   +K 
Sbjct: 84  IKLLIDNGVDTSI-LPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKM 142

Query: 72  FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
            +   A+ +I D                        G   +HIA       ++K      
Sbjct: 143 LFEYGADVNIEDDN----------------------GCYPIHIAIKHNFFDIIKLLLEKG 180

Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
           A A++ D+   +P+H AAE G  + I+LL D     I  + K  +  LH A +++R   +
Sbjct: 181 AYANVKDNNGESPLHNAAEYGDYACIKLLIDH-GNHIMNKCKNGFTPLHNAIIHNRS-AI 238

Query: 192 KLLLNKKGI-----ENYNVLHLAAMYS-REDVVKLLL-NKKGINVAALGGED 236
           +LL+N   I     +    LH A       D++ +LL +K  I++    GE+
Sbjct: 239 ELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGEN 290

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 28/117 (23%)

Query: 24  LHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASI 81
           LHLAA+  +L++V++L++ G   D+  G+  TALH+A+  G+  +VK    +GA  NA  
Sbjct: 1   LHLAAKNGNLELVKLLLEKG--ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 82  TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
            D                        G TALH+A+  G+  +VK      A+ ++ D
Sbjct: 59  KD------------------------GNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 28/109 (25%)

Query: 57  LHIASAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHI 114
           LH+A+  G+  LVK     GA  N   TD                          TALH+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--------------------------TALHL 34

Query: 115 ASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK 163
           A+  G+  +VK      A+ +  D    T +HLAA NG+  I++LL + 
Sbjct: 35  AARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 59.8 bits (144), Expect = 2e-10
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 13/135 (9%)

Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHAS-----IIELLADK- 163
             LH A+++GD+ +VK    + A+ +  D    TP+HLAA NG+       + +LL +  
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG 134

Query: 164 -FRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIEN------YNVLHLAAMYSRED 216
                   R ++    LH AA+    D+V+LLL      N         L  AA   R +
Sbjct: 135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIE 194

Query: 217 VVKLLLNKKGINVAA 231
           +VKLLL+K       
Sbjct: 195 LVKLLLDKGLHLSLL 209

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 53.8 bits (130), Expect = 6e-10
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
          G TALH AA    L++V+ L++ G  ++  + +G TALHIA+  G+  ++K  
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 59.2 bits (143), Expect = 7e-10
 Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 33/209 (15%)

Query: 22  TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
           T LH A +K DL+ +++L +YG  V+I++  G   +HIA       ++K      A A++
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV 185

Query: 82  TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQD 141
            D+                       G++ LH A+  GD A +K       +        
Sbjct: 186 KDNN----------------------GESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNG 223

Query: 142 RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS-REDVVKLLL-NKKG 199
            TP+H A  +   S IELL +   ASI ++  +    LH A       D++ +LL +K  
Sbjct: 224 FTPLHNAIIHNR-SAIELLINN--ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD 280

Query: 200 I-----ENYNVLHLAAMY-SREDVVKLLL 222
           I     +  N +  A  Y +++ V+K ++
Sbjct: 281 ISIKDNKGENPIDTAFKYINKDPVIKDII 309

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 56.2 bits (135), Expect = 7e-09
 Identities = 47/216 (21%), Positives = 89/216 (41%), Gaps = 29/216 (13%)

Query: 16  TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
              +G + + LA + RD + +++L+ +G   D++  + ++ LH A  EGD   V+     
Sbjct: 31  EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE----- 85

Query: 76  KANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANAS 135
                         ++   G    A+ +   +G T LH+A+      ++K      A+  
Sbjct: 86  --------------ELLDLGK--FADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD 129

Query: 136 ITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
           I +    +P+HLA   G    IELL D  +A +          L +A       + K+LL
Sbjct: 130 IPNTDKFSPLHLAVMMGDIKGIELLIDH-KACLDIEDCCGCTPLIIAMAKGDIAICKMLL 188

Query: 196 NKKGIENY-------NVLHLAAMYSREDVVKLLLNK 224
           +     +Y         L  A   ++ D+V+L + +
Sbjct: 189 DSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
           TALH A+  G   LVKY      + + TD    T +H+AAENG+  +++LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 46/230 (20%)

Query: 24  LHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITD 83
           L+LA   R++D+V+IL+D G  ++       T LH  S                  ++TD
Sbjct: 39  LYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNI--------------KYNLTD 84

Query: 84  HQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE--GDEALVKYF--YGAKANASITDH 139
            + I + +   G +V A       G T L  A ++     ++V+Y    GA  N   +D 
Sbjct: 85  VKEIVKLLLEYGANVNAP---DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDG 141

Query: 140 QDRTPMHLAAENGHA--SIIELLADK---------------FRASIFERTKENYNVLHLA 182
           +    +HL  E+      I++LL DK               +   I  +    +  LH A
Sbjct: 142 E--NLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYA 199

Query: 183 AMYSREDVVKLLLNKKG----IENYNV--LHLAAMYSREDVVKLLLNKKG 226
              +  + VK LL+       +  Y    LH+A + + +++ KLLLN   
Sbjct: 200 VYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 170 ERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLN 223
            R ++    LHLAA     +VVKLLL      N K  +    LHLAA     ++VKLLL 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 224 KKGINVA 230
           K     A
Sbjct: 62  KGADVNA 68

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 53.0 bits (127), Expect = 9e-08
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 9/79 (11%)

Query: 91  IAAAGTSVLANCLLMG---------EGQTALHIASAEGDEALVKYFYGAKANASITDHQD 141
           +AA+G +V A  LL G         +G+T LHIA A G   +V+      A+ ++ D   
Sbjct: 89  LAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDG 148

Query: 142 RTPMHLAAENGHASIIELL 160
           +TP+ LA ENG   +++LL
Sbjct: 149 KTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 69/288 (23%), Positives = 111/288 (38%), Gaps = 66/288 (22%)

Query: 24  LHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY----------FY 73
           LH A   R+LD+V+ L+  G +V+  +    T LHI   E ++  +K           FY
Sbjct: 41  LHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFY 100

Query: 74  GAKA-----------------------NASITDHQ------------GIQRDIAAAGTSV 98
              A                         +I                 I + + + G  +
Sbjct: 101 TLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI 160

Query: 99  LANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASI 156
             N     +G TALH A+   D+ L +    YGA  N  I D  + +P+H A ++ +  I
Sbjct: 161 --NMKDRHKGNTALHYATENKDQRLTELLLSYGANVN--IPDKTNNSPLHHAVKHYNKPI 216

Query: 157 IELLADKFRASIFERTKENYNVLHLAAMYSRE-DVVKLLLN-------KKGIENYNVLHL 208
           + +L  +  AS   R K     LH++  Y ++ D++KLLL        K  I     LH 
Sbjct: 217 VHILL-ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHS 275

Query: 209 AAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVY 256
           +     E  +KLLL + G ++ +L    LT    L+    Q     + 
Sbjct: 276 S--IKSERKLKLLL-EYGADINSLNSYKLT---PLSSAVKQYLCINIG 317

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 19/46 (41%), Positives = 32/46 (69%)

Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
          AT  NG+T LHLAA+   L++V+ L+  G  +++++ +G TAL +A
Sbjct: 11 ATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 13/32 (40%), Positives = 24/32 (75%)

Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQN 50
          +G+T LHLAAR   L++V++L++ G  V+ ++
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.4 bits (117), Expect = 5e-07
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 30/121 (24%)

Query: 15  ATTINGDTALHLAARK-----RDLDMVRILVDYGTSVDI---QNGEGQTALHIASAEGDE 66
           A   +GDT LHLAA        ++++ ++L++ G  +D+   ++ +G T LH A+  GD 
Sbjct: 101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDA 160

Query: 67  ALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKY 126
            +V+    A A+ +  +                        G TAL  A+  G   LVK 
Sbjct: 161 DIVELLLEAGADPNSRNS----------------------YGVTALDPAAKNGRIELVKL 198

Query: 127 F 127
            
Sbjct: 199 L 199

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 43/198 (21%), Positives = 71/198 (35%), Gaps = 51/198 (25%)

Query: 30  KRDLDMVRILVDYGTSVDIQNGEGQTALHIASAE--GDEALVKYF--YGAKANASITDHQ 85
               ++V++L++YG +V+  +  G T L  A ++     ++V+Y    GA  N   +D  
Sbjct: 83  TDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSD-- 140

Query: 86  GIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEAL------------------VKYF 127
                                 G+  LH+        L                  V Y 
Sbjct: 141 ----------------------GENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYL 178

Query: 128 --YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMY 185
             YG   N  I D    TP+H A  N +   ++ L D   A+     K     LH+A + 
Sbjct: 179 LSYGVPIN--IKDVYGFTPLHYAVYNNNPEFVKYLLDL-GANPNLVNKYGDTPLHIAILN 235

Query: 186 SREDVVKLLLNKKGIENY 203
           + +++ KLLLN       
Sbjct: 236 NNKEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 44/218 (20%)

Query: 13  LKATTINGDTALHLAARKRD-LDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
           + A    G T LHL       LD++++L+  G  V+ ++  G+T LH+           Y
Sbjct: 76  VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV-----------Y 124

Query: 72  FYGAKANASITDHQGIQRDIAAAGTSVLA-NCLLMGEGQTALHI--ASAEGDEALVKYFY 128
             G   N  +       R +   G  V A +   M    T L +   S   +  L++   
Sbjct: 125 LSGFNINPKVI------RLLLRKGADVNALDLYGM----TPLAVLLKSRNANVELLRLLI 174

Query: 129 GAKANASITDHQDRTPMHLAAENGHAS------IIELLADKFRASIFERTKENYNVLHLA 182
            A A+    D + R+ +H   ++          +I    D     +   T      LH  
Sbjct: 175 DAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNT-----PLHSM 229

Query: 183 AMYS---REDVVKLLLNKKGI--EN---YNVLHLAAMY 212
           A  S   R  V+ LL+    I   N      LH AA++
Sbjct: 230 ATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVF 267

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 175 NYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLL 222
               LH AA+  R ++VK LL      N+   +    LH+AA     +V+KLLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 35/161 (21%), Positives = 70/161 (43%), Gaps = 20/161 (12%)

Query: 18  INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
            NG   +H+A +    D++++L++ G   ++++  G++ LH A+  GD A +K       
Sbjct: 155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN 214

Query: 78  NASITDHQGIQRDIAAAGTSVLAN----CLLMG---------EGQTALHIA-SAEGDEAL 123
           +       G          +++ N     LL+          +G T LH A +   D  +
Sbjct: 215 HIMNKCKNG----FTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDI 270

Query: 124 VKYFYGAKANASITDHQDRTPMHLAAE--NGHASIIELLAD 162
           +      KA+ SI D++   P+  A +  N    I +++A+
Sbjct: 271 IDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIAN 311

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.8 bits (99), Expect = 9e-06
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 142 RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
           RT +H AA +G   +++ L +K    I    ++    LH+AA     +V+KLLL
Sbjct: 2   RTALHKAAISGRLELVKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDI 48
          +G T LHLAA   +L++V++L+D G  ++ 
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 53/182 (29%)

Query: 20  GDTALHLAARKRDLDMVRILVDYGTSVDIQ-NGE-------------GQTALHIASAEGD 65
           G TALHLAA +++ ++V++L++ G SV  +  G+             G++ L+ A+  G 
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS 187

Query: 66  EALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD----- 120
            ++V             D              +L    L   G T LH+   E +     
Sbjct: 188 PSIVAL--------LSED-----------PADILTADSL---GNTLLHLLVMENEFKAEY 225

Query: 121 EALVKYFY------GAKANAS-----ITDHQDRTPMHLAAENGHASIIEL-LADKFRASI 168
           E L    Y        K   S     I +HQ  TP+ LAA+ G   +  L LA K++   
Sbjct: 226 EELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKK 285

Query: 169 FE 170
           F 
Sbjct: 286 FV 287

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 24/142 (16%)

Query: 20  GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
           G T LH+AA K   D V +L+ +  +V I++  G TAL  A +     + +  Y     A
Sbjct: 558 GRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHF---A 614

Query: 80  SITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDH 139
           SI+D          A   +L  C            A+   D   +K       N    DH
Sbjct: 615 SISDPH--------AAGDLL--CT-----------AAKRNDLTAMKELLKQGLNVDSEDH 653

Query: 140 QDRTPMHLAAENGHASIIELLA 161
           Q  T + +A    H  ++ LL 
Sbjct: 654 QGATALQVAMAEDHVDMVRLLI 675

Length = 823

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 14/38 (36%), Positives = 30/38 (78%)

Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQN 50
          + A   +G+TALHLAAR  +L++V++L+++G  +++++
Sbjct: 54 VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 44/230 (19%)

Query: 20  GDTALHLAARKR---DLDMVRILVDYGTSVDIQNGEGQTALH--IASAEGDEALVKYFYG 74
           G T LHL          D+VR+L++ G  V+     G T LH  + +A     ++K    
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNAT-TLDVIKLLIK 105

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHI--ASAEGDEALVKYFYGAKA 132
           A A+                   V A   +   G+T LH+  +    +  +++      A
Sbjct: 106 AGAD-------------------VNAKDKV---GRTPLHVYLSGFNINPKVIRLLLRKGA 143

Query: 133 NASITDHQDRTPMHLAAENGHASI--IELLADKFRASIFERTKENYNVLHLAAMY--SRE 188
           + +  D    TP+ +  ++ +A++  + LL D   A ++       ++LH        R 
Sbjct: 144 DVNALDLYGMTPLAVLLKSRNANVELLRLLIDA-GADVYAVDDRFRSLLHHHLQSFKPRA 202

Query: 189 DVVKLLL------NKKGIENYNVLHLAAMYS---REDVVKLLLNKKGINV 229
            +V+ L+          +     LH  A  S   R  V+ LL+    IN 
Sbjct: 203 RIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA 252

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 18  INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY--GA 75
             GD  L  AA++ DL  ++ L+  G +VD ++ +G TAL +A AE    +V+     GA
Sbjct: 621 AAGDL-LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA 679

Query: 76  KANASITD 83
             + + TD
Sbjct: 680 DVDKANTD 687

Length = 823

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 17/66 (25%), Positives = 29/66 (43%)

Query: 18  INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
           + G T LH A    + + V+ L+D G + ++ N  G T LHIA    ++ + K       
Sbjct: 190 VYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249

Query: 78  NASITD 83
           +     
Sbjct: 250 SIKTII 255

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 19/163 (11%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           I +LL +  A+        G+TALH A   +D  +  +L+ YG +V+I +    + LH A
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHA 208

Query: 61  SAEGDEALVKYFYGAKANASITDHQG---------------IQRDIAAAGTSVLANCLLM 105
               ++ +V       A+    D  G               I + +   G  V A   ++
Sbjct: 209 VKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYIL 268

Query: 106 GEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLA 148
             G TALH +     +  +   YGA  N    +    TP+  A
Sbjct: 269 --GLTALHSSIKSERKLKLLLEYGADIN--SLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 21/229 (9%)

Query: 16  TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--- 72
           T  +G+  LH+A++  +  +V +L+ +G   +  + + +T L+  S   DE + +     
Sbjct: 68  TDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLV 127

Query: 73  -YGAKANASITDHQGIQRDIAAAGTSVLANCLLM------------GEGQTALHIASAEG 119
            YGAK N S+ D +G    +A    S      +M            G+     H+ S   
Sbjct: 128 QYGAKINNSV-DEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNP 186

Query: 120 DEALVKYFYGAKANASITDHQDRTPMHLAAEN--GHASIIELLADKFRASIFERTKENYN 177
             + + +      + S  DH   TP+H+       +  II LL      +   +  ++  
Sbjct: 187 KASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPL 246

Query: 178 VLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKG 226
            L +  +     + KLL     I +  V ++   Y R+DV++ ++N KG
Sbjct: 247 TLLIKTLSPAHLINKLLSTSNVITDQTV-NICIFYDRDDVLE-IINDKG 293

Length = 446

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.7 bits (83), Expect = 9e-04
 Identities = 12/30 (40%), Positives = 24/30 (80%)

Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDI 48
          +G+T LHLAAR  +L++V++L+++G  ++ 
Sbjct: 1  DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 25/132 (18%)

Query: 142 RTPMHLAAENGHASIIELLAD--KFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKG 199
            + +H A E G    +E L D  KF   +F   K+    LHLA +  + D++KLL+ +  
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLGKFADDVF--YKDGMTPLHLATILKKLDIMKLLIARGA 126

Query: 200 ------IENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLY 253
                  + ++ LHLA M      ++LL++ K    A L  ED  G   L          
Sbjct: 127 DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK----ACLDIEDCCGCTPL---------- 172

Query: 254 QVYLISKQQTAV 265
            +  ++K   A+
Sbjct: 173 -IIAMAKGDIAI 183

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 17/160 (10%)

Query: 15  ATTINGDTALHLAARKR--DLDMVRILVDYGTSVDIQNGEGQTALHI--ASAEGDEALVK 70
           A  + G T L +  + R  +++++R+L+D G  V   +   ++ LH    S +    +V+
Sbjct: 147 ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVR 206

Query: 71  YFYGAKANASITDHQGIQRDIAAA-----GTSVLANCLLMG--------EGQTALHIASA 117
               A  + + TD  G     + A       S++   L+ G         GQT LH A+ 
Sbjct: 207 ELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAV 266

Query: 118 EGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASII 157
             +    +      A+ +       TP+ L   N +   +
Sbjct: 267 FNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAV 306

Length = 471

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510|consensus	929		100.0
KOG0510|consensus	929		100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0508|consensus	615		100.0
KOG4412|consensus	226		100.0
KOG0508|consensus	615		100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG4177|consensus	1143		100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG0509|consensus	600		100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG4177|consensus	1143		100.0
KOG0509|consensus	600		100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG0507|consensus	854		99.96
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
KOG0502|consensus	296		99.94
KOG0502|consensus	296		99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
KOG0514|consensus	452		99.93
KOG0507|consensus	854		99.93
KOG0505|consensus	527		99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
PHA02741	169	hypothetical protein; Provisional	99.92
KOG4369|consensus	2131		99.91
PHA02884	300	ankyrin repeat protein; Provisional	99.91
KOG4369|consensus	2131		99.91
KOG0514|consensus	452		99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.87
KOG0505|consensus	527		99.87
KOG0512|consensus	228		99.86
KOG0512|consensus	228		99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.84
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.82
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.81
KOG0195|consensus	448		99.81
KOG3676|consensus	782		99.79
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
KOG0195|consensus	448		99.76
KOG3676|consensus	782		99.75
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.74
KOG4214|consensus	117		99.69
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.64
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.64
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.6
KOG4214|consensus	117		99.59
KOG1710|consensus	396		99.56
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.54
KOG1710|consensus	396		99.47
KOG0515|consensus	752		99.47
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.46
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.41
KOG0515|consensus	752		99.38
PF13606	30	Ank_3: Ankyrin repeat	99.12
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.01
KOG0783|consensus	1267		98.94
KOG0783|consensus	1267		98.94
PF13606	30	Ank_3: Ankyrin repeat	98.92
KOG0782|consensus	1004		98.91
KOG0818|consensus	669		98.87
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.79
KOG0506|consensus	622		98.76
KOG0818|consensus	669		98.74
KOG0782|consensus	1004		98.7
KOG0506|consensus	622		98.67
KOG0511|consensus	516		98.62
KOG2384|consensus	223		98.59
KOG0522|consensus	560		98.59
KOG0705|consensus	749		98.58
KOG0522|consensus	560		98.52
KOG3609|consensus	822		98.5
KOG0705|consensus	749		98.39
KOG3609|consensus	822		98.39
KOG0521|consensus	785		98.3
KOG0520|consensus	975		98.16
KOG2384|consensus	223		98.14
KOG0511|consensus	516		98.05
KOG0521|consensus	785		98.03
KOG0520|consensus	975		97.66
KOG2505|consensus	591		97.64
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.5
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.39
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.26
KOG2505|consensus	591		96.77
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.63
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.53
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.06
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.97
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.15

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.1e-45  Score=314.85  Aligned_cols=273  Identities=17%  Similarity=0.171  Sum_probs=226.5

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcC--CHHHHHHHHhccCCC
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEG--DEALVKYFYGAKANA   79 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~--~~~~v~~Ll~~~~~~   79 (315)
                      +++|++++. ++|.+|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+  ..+++++|+++|+++
T Consensus        55 v~~Ll~~Ga-dvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadi  133 (446)
T PHA02946         55 VEELLHRGY-SPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKI  133 (446)
T ss_pred             HHHHHHCcC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCc
Confidence            567777764 59999999999999999999999999999999999999999999999998766  489999999999999


Q ss_pred             cc-ccccchhhHHHhhhh-hhHHhh---------hhccCCChHHHHHHhcCC--HHHHHHHHhCCCCcccCCCCCCcHHH
Q psy12892         80 SI-TDHQGIQRDIAAAGT-SVLANC---------LLMGEGQTALHIASAEGD--EALVKYFYGAKANASITDHQDRTPMH  146 (315)
Q Consensus        80 ~~-~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~l~~A~~~~~--~~~v~~Ll~~~~~~~~~~~~~~~~l~  146 (315)
                      +. .+..+.+........ ......         ..+..|.||||.|+..++  .+++++|++.|++++..|..|.||||
T Consensus       134 n~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH  213 (446)
T PHA02946        134 NNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLH  213 (446)
T ss_pred             ccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            85 355444443322211 111111         134678999999887554  68999999999999999999999999


Q ss_pred             HHHHcC--CHHHHHHHHHhcCccccccccCCccHHHHHHHcCc-HHHHHHHHhcC-------------------------
Q psy12892        147 LAAENG--HASIIELLADKFRASIFERTKENYNVLHLAAMYSR-EDVVKLLLNKK-------------------------  198 (315)
Q Consensus       147 ~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~Ll~~~-------------------------  198 (315)
                      +|+..|  +.+++++|++  +++++..+..|.||||+|+..++ .+++++|++.+                         
T Consensus       214 ~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~  291 (446)
T PHA02946        214 IVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIIND  291 (446)
T ss_pred             HHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHH
Confidence            999876  7889998884  78999999999999999999877 46676666543                         


Q ss_pred             --CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCc
Q psy12892        199 --GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTA  276 (315)
Q Consensus       199 --~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~  276 (315)
                        ...|.||||+|+..|+.+++++|++ +|.                                .++||||+|+..   ++
T Consensus       292 ~g~~~~~TpLh~Aa~~g~~eivk~Ll~-~~~--------------------------------~~~t~L~~A~~~---~~  335 (446)
T PHA02946        292 KGKQYDSTDFKMAVEVGSIRCVKYLLD-NDI--------------------------------ICEDAMYYAVLS---EY  335 (446)
T ss_pred             cCcccCCCHHHHHHHcCCHHHHHHHHH-CCC--------------------------------ccccHHHHHHHh---CH
Confidence              3356799999999999999999998 543                                246999999999   99


Q ss_pred             HHHHHHHHhhccceeeeccCCceeEEEeecCchhhhhc
Q psy12892        277 TSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEE  314 (315)
Q Consensus       277 ~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  314 (315)
                      .+++++|+++|++++.+ ..|.|||++|++.++.++++
T Consensus       336 ~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~  372 (446)
T PHA02946        336 ETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILS  372 (446)
T ss_pred             HHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHH
Confidence            99999999999999986 58999999999999999986

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-45  Score=315.98  Aligned_cols=281  Identities=21%  Similarity=0.230  Sum_probs=236.7

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcc
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI   81 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~   81 (315)
                      ++.|+...+..++..+..|.||||.|+..|+.++|++|++.|++++..+..|.||||.|+..|+.+++++|+++|+++..
T Consensus        17 v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~   96 (434)
T PHA02874         17 IEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI   96 (434)
T ss_pred             HHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            45566666677889999999999999999999999999999999999999999999999999999999999999988754


Q ss_pred             ccccchhhHHHhhhhh-hHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy12892         82 TDHQGIQRDIAAAGTS-VLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL  160 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  160 (315)
                      .............-.. -......+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|
T Consensus        97 ~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~L  176 (434)
T PHA02874         97 LPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL  176 (434)
T ss_pred             chhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHH
Confidence            3322111110000000 000011345789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCC
Q psy12892        161 ADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGG  234 (315)
Q Consensus       161 l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  234 (315)
                      ++. |++++..+..|.||||+|+..|+.+++++|++.+      +..|.||||.|+..+. +.+++|+  .|++++.+  
T Consensus       177 l~~-g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll--~~~~in~~--  250 (434)
T PHA02874        177 LEK-GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI--NNASINDQ--  250 (434)
T ss_pred             HHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH--cCCCCCCc--
Confidence            996 9999999999999999999999999999999887      5579999999998765 5777777  57787774  


Q ss_pred             CCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCc-hhhhh
Q psy12892        235 EDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDS-KAQIE  313 (315)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~  313 (315)
                                             +..|+||||+|+...  ++.+++++|+++|+|++.+|..|.|||++|++++ ..+++
T Consensus       251 -----------------------d~~G~TpLh~A~~~~--~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~i  305 (434)
T PHA02874        251 -----------------------DIDGSTPLHHAINPP--CDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVI  305 (434)
T ss_pred             -----------------------CCCCCCHHHHHHhcC--CcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHH
Confidence                                   678999999999871  3789999999999999999999999999999887 34333

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.9e-46  Score=323.82  Aligned_cols=260  Identities=25%  Similarity=0.334  Sum_probs=241.9

Q ss_pred             hHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHH-----HHhcCCHHHHHHHHhccC
Q psy12892          3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHI-----ASAEGDEALVKYFYGAKA   77 (315)
Q Consensus         3 ~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~-----A~~~~~~~~v~~Ll~~~~   77 (315)
                      +++.... ...+..+..|.||||.|+..|+.++|++|+++|++++..+..+.||||+     |+..++.+++++|+++|+
T Consensus        19 ~~~~~~~-~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga   97 (480)
T PHA03100         19 KYIIMED-DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGA   97 (480)
T ss_pred             HHHHhcC-ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCC
Confidence            4444332 4566778899999999999999999999999999999999999999999     999999999999999999


Q ss_pred             CCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHH--hcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcC--C
Q psy12892         78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIAS--AEGDEALVKYFYGAKANASITDHQDRTPMHLAAENG--H  153 (315)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~--~  153 (315)
                      +++..+.                      .|.||||+|+  ..|+.+++++|++.|++++..+..|.||||+|+..|  +
T Consensus        98 ~i~~~d~----------------------~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  155 (480)
T PHA03100         98 NVNAPDN----------------------NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKID  155 (480)
T ss_pred             CCCCCCC----------------------CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCCh
Confidence            9987776                      7999999999  999999999999999999999999999999999999  9


Q ss_pred             HHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCC------CcHHHHHHHcCC--HHHHH
Q psy12892        154 ASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIEN------YNVLHLAAMYSR--EDVVK  219 (315)
Q Consensus       154 ~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~------~~~l~~A~~~~~--~~~~~  219 (315)
                      .+++++|+++ |++++..+..|.||||+|+..|+.+++++|++.|      +..+      .+|||.|+..++  .++++
T Consensus       156 ~~iv~~Ll~~-g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~  234 (480)
T PHA03100        156 LKILKLLIDK-GVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVN  234 (480)
T ss_pred             HHHHHHHHHC-CCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHH
Confidence            9999999996 9999999999999999999999999999999988      3334      899999999999  99999


Q ss_pred             HHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCce
Q psy12892        220 LLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTL  299 (315)
Q Consensus       220 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t  299 (315)
                      +|++ .|++++.+                         +..|.||||+|+..   ++.+++++|+++|+|++.+|..|.|
T Consensus       235 ~Ll~-~g~din~~-------------------------d~~g~TpL~~A~~~---~~~~iv~~Ll~~gad~n~~d~~g~t  285 (480)
T PHA03100        235 YLLS-YGVPINIK-------------------------DVYGFTPLHYAVYN---NNPEFVKYLLDLGANPNLVNKYGDT  285 (480)
T ss_pred             HHHH-cCCCCCCC-------------------------CCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCc
Confidence            9999 99999984                         67899999999999   9999999999999999999999999


Q ss_pred             eEEEeecCchhhhhcC
Q psy12892        300 ILYYRGKDSKAQIEEL  315 (315)
Q Consensus       300 ~l~~A~~~~~~~~~~l  315 (315)
                      |+++|++.++.+++++
T Consensus       286 pl~~A~~~~~~~iv~~  301 (480)
T PHA03100        286 PLHIAILNNNKEIFKL  301 (480)
T ss_pred             HHHHHHHhCCHHHHHH
Confidence            9999999999998863

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2e-45  Score=320.37  Aligned_cols=260  Identities=22%  Similarity=0.255  Sum_probs=239.9

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcC---CHHHHHHHHHcCCcccccCCCCChHHHHHHhcC-CHHHHHHHHhccC
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKR---DLDMVRILVDYGTSVDIQNGEGQTALHIASAEG-DEALVKYFYGAKA   77 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~   77 (315)
                      +++|++++. +++.++..|.||||+|+..+   +.+++++|+++|++++..+..|.||||+|+..| +.+++++|+++|+
T Consensus        30 v~~Ll~~ga-~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga  108 (471)
T PHA03095         30 VRRLLAAGA-DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGA  108 (471)
T ss_pred             HHHHHHcCC-CcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCC
Confidence            566777754 59999999999999999998   999999999999999999999999999999999 5999999999999


Q ss_pred             CCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHH--hcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcC--C
Q psy12892         78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIAS--AEGDEALVKYFYGAKANASITDHQDRTPMHLAAENG--H  153 (315)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~--~  153 (315)
                      +++..+.                      .|.||||+|+  ..++.+++++|++.|++++..+..|.||||+|+..+  +
T Consensus       109 ~in~~~~----------------------~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~  166 (471)
T PHA03095        109 DVNAKDK----------------------VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNAN  166 (471)
T ss_pred             CCCCCCC----------------------CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCC
Confidence            9998876                      7999999999  556899999999999999999999999999999876  6


Q ss_pred             HHHHHHHHHhcCccccccccCCccHHHHHHHc--CcHHHHHHHHhcC------CCCCCcHHHHHHHcCCH--HHHHHHHh
Q psy12892        154 ASIIELLADKFRASIFERTKENYNVLHLAAMY--SREDVVKLLLNKK------GIENYNVLHLAAMYSRE--DVVKLLLN  223 (315)
Q Consensus       154 ~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~--~~~~~Ll~  223 (315)
                      .+++++|++. |++++..+..|.||||+++..  ++.++++.|++.|      +..|.||||+|+..++.  .+++.|++
T Consensus       167 ~~iv~~Ll~~-g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~  245 (471)
T PHA03095        167 VELLRLLIDA-GADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLI  245 (471)
T ss_pred             HHHHHHHHHc-CCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHH
Confidence            8999999996 999998899999999999875  6789999999877      77899999999998874  68889998


Q ss_pred             ccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEE
Q psy12892        224 KKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYY  303 (315)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~  303 (315)
                       .|++++.+                         +..|+||||+|+..   |+.+++++|+++|+|++.+|..|.|||++
T Consensus       246 -~g~din~~-------------------------d~~g~TpLh~A~~~---~~~~~v~~LL~~gad~n~~~~~g~tpl~~  296 (471)
T PHA03095        246 -AGISINAR-------------------------NRYGQTPLHYAAVF---NNPRACRRLIALGADINAVSSDGNTPLSL  296 (471)
T ss_pred             -cCCCCCCc-------------------------CCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence             99999985                         67899999999999   99999999999999999999999999999


Q ss_pred             eecCchhhhhc
Q psy12892        304 RGKDSKAQIEE  314 (315)
Q Consensus       304 A~~~~~~~~~~  314 (315)
                      |++.|+.++++
T Consensus       297 A~~~~~~~~v~  307 (471)
T PHA03095        297 MVRNNNGRAVR  307 (471)
T ss_pred             HHHhCCHHHHH
Confidence            99999999886

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1e-45  Score=324.41  Aligned_cols=310  Identities=18%  Similarity=0.151  Sum_probs=234.1

Q ss_pred             ChhHhhhhchhhcccc-ccCCCcHHHHHHH--cCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCC--HHHHHHHHhc
Q psy12892          1 IWELLSTQTAEQLKAT-TINGDTALHLAAR--KRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGD--EALVKYFYGA   75 (315)
Q Consensus         1 ~~~~l~~~~~~~~~~~-~~~g~t~L~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~--~~~v~~Ll~~   75 (315)
                      ++++|++.+..++|.+ |..|.||||.|+.  .++.+++++|+++|++++..|..|.||||+|+..|+  .+++++|+++
T Consensus       157 iVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~  236 (764)
T PHA02716        157 LIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIEL  236 (764)
T ss_pred             HHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc
Confidence            3578888874579998 9999999999875  467999999999999999999999999999999995  5899999999


Q ss_pred             cCCCccccccchhhHHHhhh-----hhhHHhhhhc-----cCCC--hHHH---HHHhcCCHHHHHHHHhCCCCcccCCCC
Q psy12892         76 KANASITDHQGIQRDIAAAG-----TSVLANCLLM-----GEGQ--TALH---IASAEGDEALVKYFYGAKANASITDHQ  140 (315)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~--~~l~---~A~~~~~~~~v~~Ll~~~~~~~~~~~~  140 (315)
                      |++++..+..+.++......     .......+..     ....  .+++   .|+..|+.+++++|++.|++++..|..
T Consensus       237 GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~  316 (764)
T PHA02716        237 GGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSA  316 (764)
T ss_pred             CCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCC
Confidence            99999998866665432211     0111111100     0111  1222   367789999999999999999999999


Q ss_pred             CCcHHHHHHH--cCCHHHHHHHHHhcCccccccccCCccHHHHHHH--------------cCcHHHHHHHHhcC------
Q psy12892        141 DRTPMHLAAE--NGHASIIELLADKFRASIFERTKENYNVLHLAAM--------------YSREDVVKLLLNKK------  198 (315)
Q Consensus       141 ~~~~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~--------------~~~~~~~~~Ll~~~------  198 (315)
                      |+||||+|+.  .++.+++++|++. |++++..+..|+||||+|+.              .++.+++++|++.|      
T Consensus       317 G~TPLH~Aaa~~~~~~eIVklLLe~-GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~k  395 (764)
T PHA02716        317 GRTCLHQYILRHNISTDIIKLLHEY-GNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAV  395 (764)
T ss_pred             CCCHHHHHHHHhCCCchHHHHHHHc-CCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCc
Confidence            9999999864  4688999999996 99999999999999999875              36889999999988      


Q ss_pred             CCCCCcHHHH----HHHcCCHHHHHHHHhccCCccccCCCC--------CCCCCC----------c----------cccc
Q psy12892        199 GIENYNVLHL----AAMYSREDVVKLLLNKKGINVAALGGE--------DLTGRP----------D----------LTVG  246 (315)
Q Consensus       199 ~~~~~~~l~~----A~~~~~~~~~~~Ll~~~~~~~~~~~~~--------~~~~~~----------~----------~~~~  246 (315)
                      +..|.||||.    |...+..+++++|++ .++........        +..+..          +          ...+
T Consensus       396 n~~G~TPLh~y~~~a~n~~~~dIvklLis-~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~  474 (764)
T PHA02716        396 NCLGYTPLTSYICTAQNYMYYDIIDCLIS-DKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDST  474 (764)
T ss_pred             CCCCCChHHHHHHHHHhcChHHHHHHHHh-CcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhcccc
Confidence            6779999994    234578999999998 66543322110        000000          0          0000


Q ss_pred             hhh---hh-----hHHHHHhhhcCCcceeeeccCCCCcH-----HHHHHHHhhccceeeeccCCceeEEEeecCchh---
Q psy12892        247 PVQ---AY-----LYQVYLISKQQTAVHLVCSRQTGTAT-----SILRALLSTAGREIRMTVDGTLILYYRGKDSKA---  310 (315)
Q Consensus       247 ~~~---~~-----~~~~~~~~~~~t~L~~A~~~~~~~~~-----~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~---  310 (315)
                      +..   ..     ...+..+..|+||||+|+..   ++.     +++++|+++|+|+|.+|+.|+|||++|+++|+.   
T Consensus       475 ~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~---g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~  551 (764)
T PHA02716        475 KIHDVYHCAIIERYNNAVCETSGMTPLHVSIIS---HTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGH  551 (764)
T ss_pred             ccchhhHHHHHhhccccccCCCCCCHHHHHHHc---CCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCcccc
Confidence            000   00     01123467899999999998   665     566999999999999999999999999999976   


Q ss_pred             --hhhcC
Q psy12892        311 --QIEEL  315 (315)
Q Consensus       311 --~~~~l  315 (315)
                        +++++
T Consensus       552 ~~eIvk~  558 (764)
T PHA02716        552 QWYIVKN  558 (764)
T ss_pred             HHHHHHH
Confidence              77763

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-42  Score=313.53  Aligned_cols=291  Identities=21%  Similarity=0.229  Sum_probs=236.7

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcc
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI   81 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~   81 (315)
                      .++|++.+. ++|.+|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..++.+++++|++.+.+++.
T Consensus       161 ~k~Ll~~Ga-dvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~  239 (682)
T PHA02876        161 AEMLLEGGA-DVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINK  239 (682)
T ss_pred             HHHHHhCCC-CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence            466776664 6999999999999999999999999999999999999999999999999999999999999998887654


Q ss_pred             ccccchhhHHHhhhhhhHHhh---------hhccCCChHHHHHHhcCCH-HHHHHHHhCCCCcccCCCCCCcHHHHHHHc
Q psy12892         82 TDHQGIQRDIAAAGTSVLANC---------LLMGEGQTALHIASAEGDE-ALVKYFYGAKANASITDHQDRTPMHLAAEN  151 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~  151 (315)
                      .+..-.. ... .........         ..+..|.||||+|+..++. ++++.|++.|++++..+..|.||||+|+..
T Consensus       240 ~~~~L~~-ai~-~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~  317 (682)
T PHA02876        240 NDLSLLK-AIR-NEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKN  317 (682)
T ss_pred             CcHHHHH-HHH-cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence            3321110 000 000000000         1234689999999999986 689999999999999999999999999999


Q ss_pred             C-CHHHHHHHHHhcCccccccccCCccHHHHHHHc-CcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHh
Q psy12892        152 G-HASIIELLADKFRASIFERTKENYNVLHLAAMY-SREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLN  223 (315)
Q Consensus       152 ~-~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~  223 (315)
                      | ..++++.|+.. |++++..+..|.||||+|+.. +..++++.|++.+      +..|.||||+|+..++.+++++|++
T Consensus       318 g~~~~~v~~Ll~~-gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~  396 (682)
T PHA02876        318 GYDTENIRTLIML-GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLD  396 (682)
T ss_pred             CCCHHHHHHHHHc-CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9 58999999986 999999999999999999985 4688888898776      6679999999999999999999999


Q ss_pred             ccCCccccCCCCCCCCCCccccchhhh------------hhHH-----HHHhhhcCCcceeeeccCCCC-cHHHHHHHHh
Q psy12892        224 KKGINVAALGGEDLTGRPDLTVGPVQA------------YLYQ-----VYLISKQQTAVHLVCSRQTGT-ATSILRALLS  285 (315)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~-----~~~~~~~~t~L~~A~~~~~~~-~~~~i~~Ll~  285 (315)
                       .|++++..+..+.        ++++.            .+..     +.++..|+||||+|+..   + +.+++++|++
T Consensus       397 -~gad~~~~~~~g~--------T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~---~~~~~iv~lLl~  464 (682)
T PHA02876        397 -YGADIEALSQKIG--------TALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKK---NCKLDVIEMLLD  464 (682)
T ss_pred             -CCCCccccCCCCC--------chHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHh---CCcHHHHHHHHH
Confidence             9999987654332        33332            1111     24677899999999987   5 6899999999


Q ss_pred             hccceeeeccCCceeEEEeecCc
Q psy12892        286 TAGREIRMTVDGTLILYYRGKDS  308 (315)
Q Consensus       286 ~g~~~~~~~~~g~t~l~~A~~~~  308 (315)
                      +|+|++.+|..|.||+++|+.++
T Consensus       465 ~Gad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        465 NGADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHhC
Confidence            99999999999999999988765

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.4e-42  Score=274.05  Aligned_cols=191  Identities=20%  Similarity=0.233  Sum_probs=126.9

Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHh
Q psy12892         14 KATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAA   93 (315)
Q Consensus        14 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   93 (315)
                      +.+|.+|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++..+.         
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~---------   92 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDD---------   92 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC---------
Confidence            4566677777777777777777777777777665543  46777777777777777777777776666554         


Q ss_pred             hhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCC-CcHHHHHHHcCCHHHHHHHHHhcCccccccc
Q psy12892         94 AGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQD-RTPMHLAAENGHASIIELLADKFRASIFERT  172 (315)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  172 (315)
                                   .|.||||+|+..|+.+++++|++.|++++..+..| .||||+|+..|+.+++++|+++ +.+.  .+
T Consensus        93 -------------~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~-~~~~--~d  156 (284)
T PHA02791         93 -------------KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPST--FD  156 (284)
T ss_pred             -------------CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhc-CCcc--cc
Confidence                         56677777777777777777777777766666655 3677777777777777777765 3221  12


Q ss_pred             -cCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcH-HHHHHHcCCHHHHHHHHhccCCccccC
Q psy12892        173 -KENYNVLHLAAMYSREDVVKLLLNKK------GIENYNV-LHLAAMYSREDVVKLLLNKKGINVAAL  232 (315)
Q Consensus       173 -~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~-l~~A~~~~~~~~~~~Ll~~~~~~~~~~  232 (315)
                       ..|.||||+|+..|+.+++++|++.|      +..|.+| ||+|+..++.+++++|++ +|++++..
T Consensus       157 ~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~-~Ga~in~~  223 (284)
T PHA02791        157 LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFK-YDINIYSV  223 (284)
T ss_pred             cccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCccC
Confidence             23567777777777777777777665      2334444 777777777777777776 67777663

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-42  Score=300.29  Aligned_cols=265  Identities=22%  Similarity=0.239  Sum_probs=210.7

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHH
Q psy12892         13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIA   92 (315)
Q Consensus        13 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   92 (315)
                      .+..+..+.||||.||..|+.++|++|++.|++++..|..|.||||+||..|+.+++++|++.+................
T Consensus        30 ~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~  109 (477)
T PHA02878         30 STSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAF  109 (477)
T ss_pred             cCcccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHH
Confidence            34456688999999999999999999999999999999999999999999999999999998876554421110000011


Q ss_pred             hhhhhhHHhhhhcc--CCChH-----HHHHHhc--CCHHHHHHHHhCCCCcccCCCC-CCcHHHHHHHcCCHHHHHHHHH
Q psy12892         93 AAGTSVLANCLLMG--EGQTA-----LHIASAE--GDEALVKYFYGAKANASITDHQ-DRTPMHLAAENGHASIIELLAD  162 (315)
Q Consensus        93 ~~~~~~~~~~~~~~--~~~~~-----l~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~Ll~  162 (315)
                      ..........+...  .+...     +......  ...+++++|++.|++++..+.. |.||||+|+..|+.+++++|++
T Consensus       110 ~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~  189 (477)
T PHA02878        110 NNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLS  189 (477)
T ss_pred             HcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHH
Confidence            11111111111110  00000     0000011  1245888899999999999988 9999999999999999999999


Q ss_pred             hcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHc-CCHHHHHHHHhccCCccccCCCC
Q psy12892        163 KFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMY-SREDVVKLLLNKKGINVAALGGE  235 (315)
Q Consensus       163 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~  235 (315)
                      . |++++..+..|.||||.|+..++.+++++|++.|      +..|.||||+|+.. ++.+++++|++ .|++++..+  
T Consensus       190 ~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~-~gadvn~~~--  265 (477)
T PHA02878        190 Y-GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLE-HGVDVNAKS--  265 (477)
T ss_pred             C-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHH-cCCCCCccC--
Confidence            6 9999999999999999999999999999999887      67799999999976 78999999999 999999852  


Q ss_pred             CCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCc
Q psy12892        236 DLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDS  308 (315)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  308 (315)
                                            +..|.||||+|  .   ++.+++++|+++|+|++.+|..|.|||++|++.+
T Consensus       266 ----------------------~~~g~TpLh~A--~---~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        266 ----------------------YILGLTALHSS--I---KSERKLKLLLEYGADINSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             ----------------------CCCCCCHHHHH--c---cCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHc
Confidence                                  34689999999  4   5689999999999999999999999999998754

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.5e-42  Score=298.10  Aligned_cols=257  Identities=16%  Similarity=0.225  Sum_probs=222.5

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHc--CCHHHHHHHHHcCCcccccCCCCChHHHHHHhcC------CHHHHHHHH
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARK--RDLDMVRILVDYGTSVDIQNGEGQTALHIASAEG------DEALVKYFY   73 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~------~~~~v~~Ll   73 (315)
                      +++|++++. ++|.+ ..|.||||.++..  ++.++|++|+++|++++..+ .+.||||.|+..+      +.+++++|+
T Consensus        19 v~~LL~~Ga-dvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll   95 (494)
T PHA02989         19 LEFLLRTGF-DVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLL   95 (494)
T ss_pred             HHHHHHcCC-Ccccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHH
Confidence            567787765 68988 6799998876654  37899999999999999875 5789999987654      578999999


Q ss_pred             hccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhc---CCHHHHHHHHhCCCCc-ccCCCCCCcHHHHHH
Q psy12892         74 GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE---GDEALVKYFYGAKANA-SITDHQDRTPMHLAA  149 (315)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~---~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~a~  149 (315)
                      ++|++++..+.                      .|.||||.|+..   ++.+++++|++.|+++ +..+..|.||||+|+
T Consensus        96 ~~Gadin~~d~----------------------~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~  153 (494)
T PHA02989         96 KFGADINLKTF----------------------NGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYL  153 (494)
T ss_pred             HCCCCCCCCCC----------------------CCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHH
Confidence            99999998876                      789999988765   5789999999999999 789999999999987


Q ss_pred             Hc--CCHHHHHHHHHhcCccccc-cccCCccHHHHHHHcC----cHHHHHHHHhcC------CCCCCcHHHHHHHc----
Q psy12892        150 EN--GHASIIELLADKFRASIFE-RTKENYNVLHLAAMYS----REDVVKLLLNKK------GIENYNVLHLAAMY----  212 (315)
Q Consensus       150 ~~--~~~~~~~~Ll~~~~~~~~~-~~~~~~~~l~~a~~~~----~~~~~~~Ll~~~------~~~~~~~l~~A~~~----  212 (315)
                      ..  ++.+++++|+++ |++++. .+..|.||+|+|+..+    +.+++++|+++|      +..+.+++|.++..    
T Consensus       154 ~~~~~~~~iv~~Ll~~-Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~  232 (494)
T PHA02989        154 ESFSVKKDVIKILLSF-GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKIL  232 (494)
T ss_pred             HhccCCHHHHHHHHHc-CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhh
Confidence            64  588999999996 999988 5788999999998764    899999999988      44578999887654    


Q ss_pred             --CCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccce
Q psy12892        213 --SREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGRE  290 (315)
Q Consensus       213 --~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~  290 (315)
                        +..+++++|+  .+++++.+                         +..|+||||+|+..   ++.+++++|+++|+|+
T Consensus       233 ~~~~~~il~~l~--~~advn~~-------------------------d~~G~TpL~~Aa~~---~~~~~v~~LL~~Gadi  282 (494)
T PHA02989        233 SKKEFKVLNFIL--KYIKINKK-------------------------DKKGFNPLLISAKV---DNYEAFNYLLKLGDDI  282 (494)
T ss_pred             cccchHHHHHHH--hCCCCCCC-------------------------CCCCCCHHHHHHHh---cCHHHHHHHHHcCCCc
Confidence              4578888877  45899884                         77899999999999   9999999999999999


Q ss_pred             eeeccCCceeEEEeecCchhhhhc
Q psy12892        291 IRMTVDGTLILYYRGKDSKAQIEE  314 (315)
Q Consensus       291 ~~~~~~g~t~l~~A~~~~~~~~~~  314 (315)
                      +.+|..|.|||++|++.|+.++++
T Consensus       283 n~~d~~G~TpL~~A~~~~~~~iv~  306 (494)
T PHA02989        283 YNVSKDGDTVLTYAIKHGNIDMLN  306 (494)
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999999886

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-41  Score=290.11  Aligned_cols=236  Identities=22%  Similarity=0.251  Sum_probs=215.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhH
Q psy12892         20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVL   99 (315)
Q Consensus        20 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (315)
                      .+++||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+.               
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~---------------   66 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYP---------------   66 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCC---------------
Confidence            57899999999999999999999999999999999999999999999999999999998877654               


Q ss_pred             HhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcc-cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccH
Q psy12892        100 ANCLLMGEGQTALHIASAEGDEALVKYFYGAKANAS-ITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNV  178 (315)
Q Consensus       100 ~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  178 (315)
                             .+.+|||.|+..|+.+++++|++.|...+ ..+..|.||||+|+..|+.+++++|++. |++++..+..|.||
T Consensus        67 -------~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~tp  138 (413)
T PHA02875         67 -------DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR-GADPDIPNTDKFSP  138 (413)
T ss_pred             -------CcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCCH
Confidence                   68899999999999999999999987764 3466799999999999999999999996 99999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhh
Q psy12892        179 LHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYL  252 (315)
Q Consensus       179 l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (315)
                      ||+|+..|+.+++++|++.+      +..|.||||+|+..|+.+++++|++ .|++++..+                   
T Consensus       139 Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~-------------------  198 (413)
T PHA02875        139 LHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFG-------------------  198 (413)
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCC-------------------
Confidence            99999999999999999887      5679999999999999999999999 999999853                   


Q ss_pred             HHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeee---ccCCceeEEEeec
Q psy12892        253 YQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRM---TVDGTLILYYRGK  306 (315)
Q Consensus       253 ~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~---~~~g~t~l~~A~~  306 (315)
                           ...+.||+|+|+..   ++.+++++|+++|+|+++.   +..+.||++++..
T Consensus       199 -----~~~~~t~l~~A~~~---~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        199 -----KNGCVAALCYAIEN---NKIDIVRLFIKRGADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             -----CCCCchHHHHHHHc---CCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHh
Confidence                 23345899999999   9999999999999999865   6678899887543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.4e-41  Score=298.34  Aligned_cols=255  Identities=16%  Similarity=0.181  Sum_probs=211.2

Q ss_pred             ChhHhhhhchhhccccccCCCcHHHHHHHcCC--HHHHHHHHHcCCcccccCCCCChHHHHHH-----------------
Q psy12892          1 IWELLSTQTAEQLKATTINGDTALHLAARKRD--LDMVRILVDYGTSVDIQNGEGQTALHIAS-----------------   61 (315)
Q Consensus         1 ~~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~-----------------   61 (315)
                      ++++|++++. ++|.+|..|.||||+|++.|+  .++|++|+++|++++.+|..|.||||+|+                 
T Consensus       194 IVklLLe~GA-DVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~  272 (764)
T PHA02716        194 ILEWLCNNGV-NVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIES  272 (764)
T ss_pred             HHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHh
Confidence            3577887764 699999999999999999995  59999999999999999999999999764                 


Q ss_pred             --------------------hcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHh--cC
Q psy12892         62 --------------------AEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASA--EG  119 (315)
Q Consensus        62 --------------------~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~--~~  119 (315)
                                          ..|+.+++++|+++|++++..+.                      .|.||||+|+.  .+
T Consensus       273 ~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~----------------------~G~TPLH~Aaa~~~~  330 (764)
T PHA02716        273 LDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDS----------------------AGRTCLHQYILRHNI  330 (764)
T ss_pred             ccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCC----------------------CCCCHHHHHHHHhCC
Confidence                                23455555556666655555444                      79999999875  45


Q ss_pred             CHHHHHHHHhCCCCcccCCCCCCcHHHHHHH--------------cCCHHHHHHHHHhcCccccccccCCccHHHHH---
Q psy12892        120 DEALVKYFYGAKANASITDHQDRTPMHLAAE--------------NGHASIIELLADKFRASIFERTKENYNVLHLA---  182 (315)
Q Consensus       120 ~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~--------------~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a---  182 (315)
                      +.+++++|++.|++++..|..|.||||+|+.              .++.+++++|+++ |++++..+..|.||||.+   
T Consensus       331 ~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~-GADIn~kn~~G~TPLh~y~~~  409 (764)
T PHA02716        331 STDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL-GADITAVNCLGYTPLTSYICT  409 (764)
T ss_pred             CchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC-CCCCCCcCCCCCChHHHHHHH
Confidence            7899999999999999999999999999875              3689999999996 999999999999999942   


Q ss_pred             -HHcCcHHHHHHHHhcC---------------------------------------------------------------
Q psy12892        183 -AMYSREDVVKLLLNKK---------------------------------------------------------------  198 (315)
Q Consensus       183 -~~~~~~~~~~~Ll~~~---------------------------------------------------------------  198 (315)
                       ...+..+++++|++.+                                                               
T Consensus       410 a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~n  489 (764)
T PHA02716        410 AQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYN  489 (764)
T ss_pred             HHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhcc
Confidence             2345677777766531                                                               


Q ss_pred             ----CCCCCcHHHHHHHcCCH-----HHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeee
Q psy12892        199 ----GIENYNVLHLAAMYSRE-----DVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVC  269 (315)
Q Consensus       199 ----~~~~~~~l~~A~~~~~~-----~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~  269 (315)
                          +..|.||||+|+..++.     +++++|++ .|++++.+                         +..|+||||+|+
T Consensus       490 vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~-~GADIN~~-------------------------d~~G~TPLh~A~  543 (764)
T PHA02716        490 NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLS-IQYNINIP-------------------------TKNGVTPLMLTM  543 (764)
T ss_pred             ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHh-CCCCCccc-------------------------CCCCCCHHHHHH
Confidence                33588999999999876     55699999 99999984                         788999999999


Q ss_pred             ccCCCCcH-----HHHHHHHhhccceeeeccCCceeEEEeecCchhhhhc
Q psy12892        270 SRQTGTAT-----SILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEE  314 (315)
Q Consensus       270 ~~~~~~~~-----~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  314 (315)
                      ++   ++.     ++++.||++|++++...      +++|..+++.+++.
T Consensus       544 ~~---g~~~~~~~eIvk~LL~~ga~~~~~~------l~~~~~~~~~~~~~  584 (764)
T PHA02716        544 RN---NRLSGHQWYIVKNILDKRPNVDIVI------IFLDKCYANGKFPS  584 (764)
T ss_pred             Hc---CCccccHHHHHHHHHhcCCCcchHH------HHHHhhhhhhHHHH
Confidence            99   755     99999999999998763      67788777777664

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.3e-40  Score=261.51  Aligned_cols=204  Identities=19%  Similarity=0.200  Sum_probs=186.8

Q ss_pred             cCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCC
Q psy12892         30 KRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQ  109 (315)
Q Consensus        30 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (315)
                      .++.+++++|+++|++  ..|..|.||||+|+..|+.+++++|+++|++++..                        .+.
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~------------------------d~~   62 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL------------------------ENE   62 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC------------------------CCC
Confidence            4688999999999985  57899999999999999999999999999987653                        467


Q ss_pred             hHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCc-cHHHHHHHcCcH
Q psy12892        110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENY-NVLHLAAMYSRE  188 (315)
Q Consensus       110 ~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~~l~~a~~~~~~  188 (315)
                      ||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. +++++..+..|+ ||||+|+..|+.
T Consensus        63 TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~-gadin~~~~~g~~TpL~~Aa~~g~~  141 (284)
T PHA02791         63 FPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDV  141 (284)
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCcHHHHHHHHcCCH
Confidence            999999999999999999999999999999999999999999999999999996 999998888874 899999999999


Q ss_pred             HHHHHHHhcCC-----CCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCC
Q psy12892        189 DVVKLLLNKKG-----IENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQT  263 (315)
Q Consensus       189 ~~~~~Ll~~~~-----~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  263 (315)
                      +++++|++.+.     ..|.||||+|+..|+.+++++|++ +|++++..                         +..|.|
T Consensus       142 eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~-~gAd~n~~-------------------------d~~g~t  195 (284)
T PHA02791        142 SIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD-YMTSTNTN-------------------------NSLLFI  195 (284)
T ss_pred             HHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCcc-------------------------cCCCCC
Confidence            99999998752     247899999999999999999999 99999985                         556776


Q ss_pred             c-ceeeeccCCCCcHHHHHHHHhhccc
Q psy12892        264 A-VHLVCSRQTGTATSILRALLSTAGR  289 (315)
Q Consensus       264 ~-L~~A~~~~~~~~~~~i~~Ll~~g~~  289 (315)
                      | ||+|+..   ++.+++++|+++|++
T Consensus       196 ~~L~~Aa~~---~~~e~v~lLl~~Ga~  219 (284)
T PHA02791        196 PDIKLAIDN---KDLEMLQALFKYDIN  219 (284)
T ss_pred             hHHHHHHHc---CCHHHHHHHHHCCCC
Confidence            6 9999999   999999999999985

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.8e-41  Score=291.73  Aligned_cols=241  Identities=25%  Similarity=0.405  Sum_probs=226.2

Q ss_pred             ChhHhhhhchhhccccccCCCcHHHH-----HHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHH--hcCCHHHHHHHH
Q psy12892          1 IWELLSTQTAEQLKATTINGDTALHL-----AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIAS--AEGDEALVKYFY   73 (315)
Q Consensus         1 ~~~~l~~~~~~~~~~~~~~g~t~L~~-----A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~--~~~~~~~v~~Ll   73 (315)
                      ++++|++++. +++..+..|.||||+     |+..|+.+++++|+++|++++..+..|.||||+|+  ..|+.+++++|+
T Consensus        50 ivk~Ll~~g~-~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll  128 (480)
T PHA03100         50 VVKILLDNGA-DINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLL  128 (480)
T ss_pred             HHHHHHHcCC-CCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHH
Confidence            3577887764 589999999999999     99999999999999999999999999999999999  999999999999


Q ss_pred             hccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcC--CHHHHHHHHhCCCCcccCCCCCCcHHHHHHHc
Q psy12892         74 GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG--DEALVKYFYGAKANASITDHQDRTPMHLAAEN  151 (315)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~  151 (315)
                      ++|++++..+.                      .|.||||.|+..+  +.+++++|++.|++++..+..|.||||+|+..
T Consensus       129 ~~g~~~~~~~~----------------------~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~  186 (480)
T PHA03100        129 DNGANVNIKNS----------------------DGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEK  186 (480)
T ss_pred             HcCCCCCccCC----------------------CCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHh
Confidence            99999988776                      7999999999999  99999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCccccccccCC------ccHHHHHHHcCc--HHHHHHHHhcC------CCCCCcHHHHHHHcCCHHH
Q psy12892        152 GHASIIELLADKFRASIFERTKEN------YNVLHLAAMYSR--EDVVKLLLNKK------GIENYNVLHLAAMYSREDV  217 (315)
Q Consensus       152 ~~~~~~~~Ll~~~~~~~~~~~~~~------~~~l~~a~~~~~--~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~  217 (315)
                      |+.+++++|++. |++++..+..+      .||+|.|+..++  .+++++|++.|      +..|.||||.|+..++.++
T Consensus       187 ~~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~i  265 (480)
T PHA03100        187 GNIDVIKFLLDN-GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEF  265 (480)
T ss_pred             CCHHHHHHHHHc-CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            999999999996 99999988888      899999999999  99999999986      6679999999999999999


Q ss_pred             HHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeec
Q psy12892        218 VKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMT  294 (315)
Q Consensus       218 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~  294 (315)
                      +++|++ .|++++..                         +..|.||+++|+..   ++.+++++|+++|++++..+
T Consensus       266 v~~Ll~-~gad~n~~-------------------------d~~g~tpl~~A~~~---~~~~iv~~Ll~~g~~i~~i~  313 (480)
T PHA03100        266 VKYLLD-LGANPNLV-------------------------NKYGDTPLHIAILN---NNKEIFKLLLNNGPSIKTII  313 (480)
T ss_pred             HHHHHH-cCCCCCcc-------------------------CCCCCcHHHHHHHh---CCHHHHHHHHhcCCCHHHHH
Confidence            999999 99999984                         78899999999999   99999999999999987543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=9.8e-41  Score=284.50  Aligned_cols=248  Identities=17%  Similarity=0.165  Sum_probs=215.0

Q ss_pred             cccccCC-CcHHHHHHH--cCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhH
Q psy12892         14 KATTING-DTALHLAAR--KRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRD   90 (315)
Q Consensus        14 ~~~~~~g-~t~L~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~   90 (315)
                      ......| .++||.++.  ..+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+.      
T Consensus        30 ~~~~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~------  103 (446)
T PHA02946         30 QAIEPSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDK------  103 (446)
T ss_pred             hccCCCCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC------
Confidence            3344444 689998775  4478999999999999999999999999999999999999999999999998876      


Q ss_pred             HHhhhhhhHHhhhhccCCChHHHHHHhcC--CHHHHHHHHhCCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcc
Q psy12892         91 IAAAGTSVLANCLLMGEGQTALHIASAEG--DEALVKYFYGAKANASI-TDHQDRTPMHLAAENGHASIIELLADKFRAS  167 (315)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~l~~A~~~~--~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~  167 (315)
                                      .|.||||+|+..+  ..+++++|++.|++++. .+..|.|||+ |+..|+.+++++|++. |++
T Consensus       104 ----------------~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~-gad  165 (446)
T PHA02946        104 ----------------QHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSI-GFE  165 (446)
T ss_pred             ----------------CCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhc-ccc
Confidence                            7999999998766  48999999999999985 6889999997 6777999999999996 999


Q ss_pred             ccccccCCccHHHHHHHcC--cHHHHHHHHhcC------CCCCCcHHHHHHHcC--CHHHHHHHHhccCCccccCCCCCC
Q psy12892        168 IFERTKENYNVLHLAAMYS--REDVVKLLLNKK------GIENYNVLHLAAMYS--REDVVKLLLNKKGINVAALGGEDL  237 (315)
Q Consensus       168 ~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~------~~~~~~~l~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~  237 (315)
                      ++..+..|+||||+|+..+  +.+++++|++.|      +..|.||||+|+..+  +.+++++|++  |++++.+     
T Consensus       166 ~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~-----  238 (446)
T PHA02946        166 ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQ-----  238 (446)
T ss_pred             ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCC-----
Confidence            9999999999999988755  468999999887      678999999999875  8899999984  7899884     


Q ss_pred             CCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCc-HHHHHHHHhhcccee--------------------ee-cc
Q psy12892        238 TGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTA-TSILRALLSTAGREI--------------------RM-TV  295 (315)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~-~~~i~~Ll~~g~~~~--------------------~~-~~  295 (315)
                                          +..|.||||+|+..   ++ .+++++|+++|++++                    .. +.
T Consensus       239 --------------------d~~G~TpLh~A~~~---~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~  295 (446)
T PHA02946        239 --------------------NKFGDSPLTLLIKT---LSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQ  295 (446)
T ss_pred             --------------------CCCCCCHHHHHHHh---CChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcc
Confidence                                78899999999999   77 589999999987542                    11 23


Q ss_pred             CCceeEEEeecCchhhhhcC
Q psy12892        296 DGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       296 ~g~t~l~~A~~~~~~~~~~l  315 (315)
                      .|.||||+|+++|+.+++++
T Consensus       296 ~~~TpLh~Aa~~g~~eivk~  315 (446)
T PHA02946        296 YDSTDFKMAVEVGSIRCVKY  315 (446)
T ss_pred             cCCCHHHHHHHcCCHHHHHH
Confidence            57799999999999999874

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-40  Score=300.95  Aligned_cols=275  Identities=20%  Similarity=0.221  Sum_probs=220.0

Q ss_pred             HcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhh--hhHHhhhhc-
Q psy12892         29 RKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGT--SVLANCLLM-  105 (315)
Q Consensus        29 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-  105 (315)
                      ..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..+.+........  ....+.+.+ 
T Consensus       154 ~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~  233 (682)
T PHA02876        154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDN  233 (682)
T ss_pred             HCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            56789999999999999999999999999999999999999999999999988776554433222211  111111111 


Q ss_pred             ----cCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCH-HHHHHHHHhcCccccccccCCccHHH
Q psy12892        106 ----GEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHA-SIIELLADKFRASIFERTKENYNVLH  180 (315)
Q Consensus       106 ----~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~Ll~~~~~~~~~~~~~~~~~l~  180 (315)
                          ..+.++++.|+..++.+.+++|++.|.+++..+..|.||||+|+..++. +++++|++. |++++..+..|.||||
T Consensus       234 ~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~-gadin~~d~~g~TpLh  312 (682)
T PHA02876        234 RSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER-GADVNAKNIKGETPLY  312 (682)
T ss_pred             CCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHC-CCCCCCcCCCCCCHHH
Confidence                2344667777777778888888888888999999999999999999986 588889886 9999999999999999


Q ss_pred             HHHHcC-cHHHHHHHHhcC------CCCCCcHHHHHHHc-CCHHHHHHHHhccCCccccCCCCCCCCCCccccchhh---
Q psy12892        181 LAAMYS-REDVVKLLLNKK------GIENYNVLHLAAMY-SREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQ---  249 (315)
Q Consensus       181 ~a~~~~-~~~~~~~Ll~~~------~~~~~~~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~---  249 (315)
                      +|+..| ..+++++|+..+      +..|.||||+|+.. ++.++++.|++ .|++++.++..+.        +|++   
T Consensus       313 ~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~-~gadin~~d~~G~--------TpLh~Aa  383 (682)
T PHA02876        313 LMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLE-LGANVNARDYCDK--------TPIHYAA  383 (682)
T ss_pred             HHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHH-cCCCCccCCCCCC--------CHHHHHH
Confidence            999999 589999999877      66789999999985 57899999998 9999998765433        3333   


Q ss_pred             --------hhhHHH-----HHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCc-hhhhhcC
Q psy12892        250 --------AYLYQV-----YLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDS-KAQIEEL  315 (315)
Q Consensus       250 --------~~~~~~-----~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~l  315 (315)
                              ..+.+.     ..+..|.||||+|+...  +...++++|+++|++++.+|..|.||||+|++.| +.+++++
T Consensus       384 ~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~--~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~l  461 (682)
T PHA02876        384 VRNNVVIINTLLDYGADIEALSQKIGTALHFALCGT--NPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEM  461 (682)
T ss_pred             HcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcC--CHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHH
Confidence                    222221     34567889999998762  4467799999999999999999999999999876 5787763

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.6e-40  Score=283.27  Aligned_cols=239  Identities=21%  Similarity=0.272  Sum_probs=215.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHc-CCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHH
Q psy12892         22 TALHLAARKRDLDMVRILVDY-GTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLA  100 (315)
Q Consensus        22 t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
                      ..|..|+..|+++.++.|++. +..++..+..|.||||.|+..|+.+++++|+++|++++..+.                
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~----------------   66 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINT----------------   66 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------------
Confidence            368899999999999999975 555788888999999999999999999999999999987765                


Q ss_pred             hhhhccCCChHHHHHHhcCCHHHHHHHHhCCC-----------------------CcccCCCCCCcHHHHHHHcCCHHHH
Q psy12892        101 NCLLMGEGQTALHIASAEGDEALVKYFYGAKA-----------------------NASITDHQDRTPMHLAAENGHASII  157 (315)
Q Consensus       101 ~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~-----------------------~~~~~~~~~~~~l~~a~~~~~~~~~  157 (315)
                            .|.|||+.|+..|+.+++++|++.|+                       +++..+..|.||||+|+..|+.+++
T Consensus        67 ------~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v  140 (434)
T PHA02874         67 ------KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESI  140 (434)
T ss_pred             ------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHH
Confidence                  68899999999999999999987664                       4556788899999999999999999


Q ss_pred             HHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCcccc
Q psy12892        158 ELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAA  231 (315)
Q Consensus       158 ~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~  231 (315)
                      ++|++. |++++..+..|.||||+|+..++.+++++|++.+      +..|.||||.|+..|+.+++++|++ .|++++.
T Consensus       141 ~~Ll~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~-~g~~i~~  218 (434)
T PHA02874        141 KMLFEY-GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLID-HGNHIMN  218 (434)
T ss_pred             HHHHhC-CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCcC
Confidence            999996 9999999999999999999999999999999877      5678999999999999999999999 9999887


Q ss_pred             CCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCc-hh
Q psy12892        232 LGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDS-KA  310 (315)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~  310 (315)
                      .                         +..|.||||.|+..   +. +.+++|+ .|++++.+|..|.||||+|++.+ +.
T Consensus       219 ~-------------------------~~~g~TpL~~A~~~---~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~  268 (434)
T PHA02874        219 K-------------------------CKNGFTPLHNAIIH---NR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDI  268 (434)
T ss_pred             C-------------------------CCCCCCHHHHHHHC---Ch-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcH
Confidence            4                         67799999999998   54 6777777 58999999999999999999876 67


Q ss_pred             hhhc
Q psy12892        311 QIEE  314 (315)
Q Consensus       311 ~~~~  314 (315)
                      ++++
T Consensus       269 ~iv~  272 (434)
T PHA02874        269 DIID  272 (434)
T ss_pred             HHHH
Confidence            7765

>KOG0510|consensus

Probab=100.00  E-value=1.2e-40  Score=282.34  Aligned_cols=274  Identities=21%  Similarity=0.273  Sum_probs=234.6

Q ss_pred             hccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHH
Q psy12892         12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDI   91 (315)
Q Consensus        12 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~   91 (315)
                      ...+.|..|.||||+|+..+..+.+++|++.|++....+..+.+|+|+|+..++.+.++.|+++|++++..+.       
T Consensus        80 ~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de-------  152 (929)
T KOG0510|consen   80 ISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDE-------  152 (929)
T ss_pred             hhhhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCcccccc-------
Confidence            4677888999999999999999999999999999999999999999999999999999999999999998887       


Q ss_pred             HhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhc----Ccc
Q psy12892         92 AAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKF----RAS  167 (315)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~----~~~  167 (315)
                                     .+.||||+|+..++.|..+.|++.|+++...+..|++|+|.|++.|..++++..+.+.    ...
T Consensus       153 ---------------~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~  217 (929)
T KOG0510|consen  153 ---------------NGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTH  217 (929)
T ss_pred             ---------------CCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcc
Confidence                           7889999999999999888999999999999999999999999999999999888722    566


Q ss_pred             ccccccCCccHHHHHHHcCcHHHHHHHHhcC---------------------CCCCCcHHHHHHHcCCHHHHHHHHhccC
Q psy12892        168 IFERTKENYNVLHLAAMYSREDVVKLLLNKK---------------------GIENYNVLHLAAMYSREDVVKLLLNKKG  226 (315)
Q Consensus       168 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~---------------------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~  226 (315)
                      ++..+..+.+|||.|+..|++++++.+++.+                     |.+|.||||+|++.|+.+.++.|+. .|
T Consensus       218 in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~-~G  296 (929)
T KOG0510|consen  218 INFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLG-FG  296 (929)
T ss_pred             cccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHH-cC
Confidence            7888888999999999999999999888765                     6778999999999999999999998 99


Q ss_pred             CccccCCCCCCCCCCccccchhh-------hhhH------HHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhcccee--
Q psy12892        227 INVAALGGEDLTGRPDLTVGPVQ-------AYLY------QVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREI--  291 (315)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~------~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~--  291 (315)
                      ++++.++..+.   ++++..+..       +.+.      -+..|..|.||||+|++.   |+.+++++||++||+..  
T Consensus       297 a~I~~kn~d~~---spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~---gH~~v~qlLl~~GA~~~~~  370 (929)
T KOG0510|consen  297 ASINSKNKDEE---SPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKS---GHDRVVQLLLNKGALFLNM  370 (929)
T ss_pred             CcccccCCCCC---CchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhc---CHHHHHHHHHhcChhhhcc
Confidence            99988763332   233322211       1111      025678899999999999   99999999999999987  


Q ss_pred             -eeccCCceeEEEeecCchhhhhc
Q psy12892        292 -RMTVDGTLILYYRGKDSKAQIEE  314 (315)
Q Consensus       292 -~~~~~g~t~l~~A~~~~~~~~~~  314 (315)
                       ..|.+|.||||.|+++|+..+|+
T Consensus       371 ~e~D~dg~TaLH~Aa~~g~~~av~  394 (929)
T KOG0510|consen  371 SEADSDGNTALHLAAKYGNTSAVQ  394 (929)
T ss_pred             cccccCCchhhhHHHHhccHHHHH
Confidence             45999999999999999999875

>KOG0510|consensus

Probab=100.00  E-value=7.5e-40  Score=277.45  Aligned_cols=274  Identities=27%  Similarity=0.342  Sum_probs=233.8

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcc
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI   81 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~   81 (315)
                      +++|++.+ .+++-++.++.+|+|+|+..|++++++.|+++|+|++..|..|.||||.||..++.+..+.|+..|+++..
T Consensus       104 i~~Lls~g-ad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K  182 (929)
T KOG0510|consen  104 IQVLLSYG-ADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCK  182 (929)
T ss_pred             HHHHHhcC-CCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCc
Confidence            45555554 46888999999999999999999999999999999999999999999999999999988999999999888


Q ss_pred             ccccchhhHHHhhh--hhhHHh--------------hhhccCCChHHHHHHhcCCHHHHHHHHhCCCCc-----------
Q psy12892         82 TDHQGIQRDIAAAG--TSVLAN--------------CLLMGEGQTALHIASAEGDEALVKYFYGAKANA-----------  134 (315)
Q Consensus        82 ~~~~~~~~~~~~~~--~~~~~~--------------~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~-----------  134 (315)
                      .+..+....-....  ...+..              ...+..+.+|||.|+..|++++++.+++.|...           
T Consensus       183 ~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~  262 (929)
T KOG0510|consen  183 SDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQE  262 (929)
T ss_pred             ccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHH
Confidence            77776554211111  111111              112357889999999999999999999876543           


Q ss_pred             ----ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHh-cC-------CCCC
Q psy12892        135 ----SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN-KK-------GIEN  202 (315)
Q Consensus       135 ----~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~~-------~~~~  202 (315)
                          +..|..|.||||+|++.|+.++++.|+.. |++++.++.++.||||.|+.+|+.++++.|++ .+       +..|
T Consensus       263 kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~-Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g  341 (929)
T KOG0510|consen  263 KELVNDEDNDGCTPLHYAARQGGPESVDNLLGF-GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHG  341 (929)
T ss_pred             HHHhhcccccCCchHHHHHHcCChhHHHHHHHc-CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccC
Confidence                44688899999999999999999999996 99999999999999999999999999999998 22       6779


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHH
Q psy12892        203 YNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRA  282 (315)
Q Consensus       203 ~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~  282 (315)
                      .||||.|+.+|+..+++.|++ .|+......                      ..|..|.||||.|+.+   |+..+|+.
T Consensus       342 ~tpLHlaa~~gH~~v~qlLl~-~GA~~~~~~----------------------e~D~dg~TaLH~Aa~~---g~~~av~~  395 (929)
T KOG0510|consen  342 MTPLHLAAKSGHDRVVQLLLN-KGALFLNMS----------------------EADSDGNTALHLAAKY---GNTSAVQK  395 (929)
T ss_pred             CCchhhhhhcCHHHHHHHHHh-cChhhhccc----------------------ccccCCchhhhHHHHh---ccHHHHHH
Confidence            999999999999999999999 998876421                      0378899999999999   99999999


Q ss_pred             HHhhccceeeeccCCceeEEE
Q psy12892        283 LLSTAGREIRMTVDGTLILYY  303 (315)
Q Consensus       283 Ll~~g~~~~~~~~~g~t~l~~  303 (315)
                      |+++|+++..+|+.|.+++++
T Consensus       396 Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  396 LISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHcCCceeeccccccccccc
Confidence            999999999999999999996

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-39  Score=284.31  Aligned_cols=242  Identities=21%  Similarity=0.250  Sum_probs=219.7

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcC-CHHHHHHHHHcCCcccccCCCCChHHHHHH--hcCCHHHHHHHHhccCC
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKR-DLDMVRILVDYGTSVDIQNGEGQTALHIAS--AEGDEALVKYFYGAKAN   78 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~--~~~~~~~v~~Ll~~~~~   78 (315)
                      +++|++++. ++|.++..|.||||+|+..| ..+++++|+++|++++..+..|.||||+|+  ..++.+++++|+++|++
T Consensus        66 v~~Ll~~Ga-din~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad  144 (471)
T PHA03095         66 VRLLLEAGA-DVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD  144 (471)
T ss_pred             HHHHHHCCC-CCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC
Confidence            566777664 69999999999999999999 599999999999999999999999999999  56689999999999999


Q ss_pred             CccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcC--CHHHHHHHHhCCCCcccCCCCCCcHHHHHHHc--CCH
Q psy12892         79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG--DEALVKYFYGAKANASITDHQDRTPMHLAAEN--GHA  154 (315)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~--~~~  154 (315)
                      ++..+.                      .|.||||+|+..+  +.+++++|++.|++++..+..|.||||+++..  ++.
T Consensus       145 ~~~~d~----------------------~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~  202 (471)
T PHA03095        145 VNALDL----------------------YGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRA  202 (471)
T ss_pred             CCccCC----------------------CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcH
Confidence            998776                      7899999998876  68999999999999999999999999999975  778


Q ss_pred             HHHHHHHHhcCccccccccCCccHHHHHHHcCcH--HHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccC
Q psy12892        155 SIIELLADKFRASIFERTKENYNVLHLAAMYSRE--DVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKG  226 (315)
Q Consensus       155 ~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~  226 (315)
                      ++++.|++. |++++..+..|.||||+|+..++.  .+++.|++.+      +..|.||||+|+..|+.+++++|++ .|
T Consensus       203 ~i~~~Ll~~-g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~-~g  280 (471)
T PHA03095        203 RIVRELIRA-GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIA-LG  280 (471)
T ss_pred             HHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cC
Confidence            999999996 999999999999999999999864  5778888766      6789999999999999999999999 99


Q ss_pred             CccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccC
Q psy12892        227 INVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVD  296 (315)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~  296 (315)
                      ++++..                         +..|.||||+|+..   ++.+++++|+++|++++..+..
T Consensus       281 ad~n~~-------------------------~~~g~tpl~~A~~~---~~~~~v~~LL~~~~~~~~~~~~  322 (471)
T PHA03095        281 ADINAV-------------------------SSDGNTPLSLMVRN---NNGRAVRAALAKNPSAETVAAT  322 (471)
T ss_pred             CCCccc-------------------------CCCCCCHHHHHHHh---CCHHHHHHHHHhCCCHHHHHHH
Confidence            999984                         78899999999999   9999999999999998754443

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.9e-39  Score=285.43  Aligned_cols=184  Identities=16%  Similarity=0.134  Sum_probs=130.2

Q ss_pred             hccccccCCCcHHHHHHHc---CCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHH----HHHHHHhccCCCccccc
Q psy12892         12 QLKATTINGDTALHLAARK---RDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA----LVKYFYGAKANASITDH   84 (315)
Q Consensus        12 ~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~----~v~~Ll~~~~~~~~~~~   84 (315)
                      ..+.+|.+|.||||+|+..   |+.++|++|+++|++++..+..|.||||+|+..|+.+    +++.|++.+...+..+.
T Consensus        24 ~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~  103 (661)
T PHA02917         24 PNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF  103 (661)
T ss_pred             cccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc
Confidence            3688899999999998665   8899999999999999999999999999999988743    45666665433333222


Q ss_pred             cchhhHHHhhhhhhHHhhh---------hccCCChHHHHHH--hcCCHHHHHHHHhCCCCcccCCC---CC---------
Q psy12892         85 QGIQRDIAAAGTSVLANCL---------LMGEGQTALHIAS--AEGDEALVKYFYGAKANASITDH---QD---------  141 (315)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~A~--~~~~~~~v~~Ll~~~~~~~~~~~---~~---------  141 (315)
                      ................+.+         .+..|.|||+.|+  ..++.+++++|+++|++++..+.   .|         
T Consensus       104 ~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        104 NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccc
Confidence            1100001111111111111         2246888888543  46788888888888888875442   23         


Q ss_pred             --CcHHHHHHH-----------cCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcH--HHHHHHHh
Q psy12892        142 --RTPMHLAAE-----------NGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRE--DVVKLLLN  196 (315)
Q Consensus       142 --~~~l~~a~~-----------~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~Ll~  196 (315)
                        .||||+|+.           .++.+++++|+++ |++++..+.+|.||||+|+..|+.  +++++|++
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~-Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH-GIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHC-CCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence              488888875           4578888888886 888888888888888888888864  67777764

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-39  Score=282.61  Aligned_cols=244  Identities=18%  Similarity=0.261  Sum_probs=214.3

Q ss_pred             cCCCcHHHHHHH--cCCHHHHHHHHHcCCcccccCCCCChHHHHHHhc-----CCHHHHHHHHhccCCCccccccchhhH
Q psy12892         18 INGDTALHLAAR--KRDLDMVRILVDYGTSVDIQNGEGQTALHIASAE-----GDEALVKYFYGAKANASITDHQGIQRD   90 (315)
Q Consensus        18 ~~g~t~L~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-----~~~~~v~~Ll~~~~~~~~~~~~~~~~~   90 (315)
                      ..|.|+++.+..  .++.++|++|+++|++++..|..|.||||.|+..     ++.+++++|+++|++++..+.      
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~------  107 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNS------  107 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCC------
Confidence            457787775554  4589999999999999999999999999998864     678999999999999998887      


Q ss_pred             HHhhhhhhHHhhhhccCCChHHHHHHhcC---CHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCC---HHHHHHHHHhc
Q psy12892         91 IAAAGTSVLANCLLMGEGQTALHIASAEG---DEALVKYFYGAKANASITDHQDRTPMHLAAENGH---ASIIELLADKF  164 (315)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~l~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~Ll~~~  164 (315)
                                      .|.||||+|+..+   +.+++++|++.|++++..+..|.||||+|++.++   .+++++|+++ 
T Consensus       108 ----------------~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~-  170 (489)
T PHA02798        108 ----------------DGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK-  170 (489)
T ss_pred             ----------------CcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHh-
Confidence                            7999999999875   7899999999999999999999999999999988   9999999997 


Q ss_pred             Cccccccc-cCCccHHHHHHHc----CcHHHHHHHHhcC------CCCCCcHHH-------HHHHcCCHHHHHHHHhccC
Q psy12892        165 RASIFERT-KENYNVLHLAAMY----SREDVVKLLLNKK------GIENYNVLH-------LAAMYSREDVVKLLLNKKG  226 (315)
Q Consensus       165 ~~~~~~~~-~~~~~~l~~a~~~----~~~~~~~~Ll~~~------~~~~~~~l~-------~A~~~~~~~~~~~Ll~~~~  226 (315)
                      |++++..+ ..+.||+|.++..    ++.+++++|++.|      +..+.++++       .+...++.+++++|+.  +
T Consensus       171 gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~--~  248 (489)
T PHA02798        171 GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS--Y  248 (489)
T ss_pred             CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh--c
Confidence            99998875 5688999998764    4799999999988      345667665       2345677889988875  5


Q ss_pred             CccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeec
Q psy12892        227 INVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGK  306 (315)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~  306 (315)
                      +|+|.+                         +..|+||||+|+..   ++.+++++|+++|+|++.+|..|.|||++|++
T Consensus       249 ~dvN~~-------------------------d~~G~TPL~~A~~~---~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~  300 (489)
T PHA02798        249 IDINQV-------------------------DELGFNPLYYSVSH---NNRKIFEYLLQLGGDINIITELGNTCLFTAFE  300 (489)
T ss_pred             CCCCCc-------------------------CcCCccHHHHHHHc---CcHHHHHHHHHcCCcccccCCCCCcHHHHHHH
Confidence            899984                         77899999999999   99999999999999999999999999999999


Q ss_pred             Cchhhhhc
Q psy12892        307 DSKAQIEE  314 (315)
Q Consensus       307 ~~~~~~~~  314 (315)
                      .|+.++++
T Consensus       301 ~~~~~iv~  308 (489)
T PHA02798        301 NESKFIFN  308 (489)
T ss_pred             cCcHHHHH
Confidence            99998875

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.1e-39  Score=275.97  Aligned_cols=298  Identities=16%  Similarity=0.183  Sum_probs=191.8

Q ss_pred             cc-ccccCCCcHHHHHHHcC---CHHHHHHHHHcCCcccccCCCCChHHHHHHhcC--CHHHHHHHHhccCCC--ccccc
Q psy12892         13 LK-ATTINGDTALHLAARKR---DLDMVRILVDYGTSVDIQNGEGQTALHIASAEG--DEALVKYFYGAKANA--SITDH   84 (315)
Q Consensus        13 ~~-~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~--~~~~v~~Ll~~~~~~--~~~~~   84 (315)
                      +| .+|.+|.||||+|+..|   +.++|++|+++|++++.+|..|.||||+|+..+  +.+++++|+++|++.  +..+.
T Consensus        33 in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~  112 (672)
T PHA02730         33 LSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSN  112 (672)
T ss_pred             hhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccc
Confidence            55 88899999999999997   599999999999999999999999999999977  799999999997755  43331


Q ss_pred             cchhhH--HHh--hhhhhHHhhhh---------------ccCCChHHHHHHhcCCHHHHHHHHhCCCCcc-------cCC
Q psy12892         85 QGIQRD--IAA--AGTSVLANCLL---------------MGEGQTALHIASAEGDEALVKYFYGAKANAS-------ITD  138 (315)
Q Consensus        85 ~~~~~~--~~~--~~~~~~~~~~~---------------~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~-------~~~  138 (315)
                      ....+.  ...  .......+.+.               .+.|.+|++++...+++++|++|++.|++++       ..+
T Consensus       113 ~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~  192 (672)
T PHA02730        113 INDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYD  192 (672)
T ss_pred             cCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccccccc
Confidence            121111  111  01111111111               1245666777766667777777766666663       122


Q ss_pred             CCCCc-HHHHH------HHcCCHHHHHHHHHhcCccccccccCCccHHHH--HHHcCcHHHHHHHHh-------------
Q psy12892        139 HQDRT-PMHLA------AENGHASIIELLADKFRASIFERTKENYNVLHL--AAMYSREDVVKLLLN-------------  196 (315)
Q Consensus       139 ~~~~~-~l~~a------~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~--a~~~~~~~~~~~Ll~-------------  196 (315)
                      ...++ .|+++      ..+++.+++++|+++ |++++.++..|.||||+  +...++.|++++|++             
T Consensus       193 ~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~-GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~  271 (672)
T PHA02730        193 SDRCKNSLHYYILSHRESESLSKDVIKCLIDN-NVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQ  271 (672)
T ss_pred             CCccchhHHHHHHhhhhhhccCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccc
Confidence            22332 23322      233455666666664 66666666666666653  333444555555555             


Q ss_pred             --------------------------------------------------------------------------------
Q psy12892        197 --------------------------------------------------------------------------------  196 (315)
Q Consensus       197 --------------------------------------------------------------------------------  196 (315)
                                                                                                      
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~  351 (672)
T PHA02730        272 PYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYL  351 (672)
T ss_pred             hhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ----------------cC-----CCCCCcHHHHHHHcCC----HHHHHHHHhccCC--ccccCCCCCCCCCCc----c-c
Q psy12892        197 ----------------KK-----GIENYNVLHLAAMYSR----EDVVKLLLNKKGI--NVAALGGEDLTGRPD----L-T  244 (315)
Q Consensus       197 ----------------~~-----~~~~~~~l~~A~~~~~----~~~~~~Ll~~~~~--~~~~~~~~~~~~~~~----~-~  244 (315)
                                      +|     ...|.||||.|+..++    .+++++|++ +|+  +++..+..+.++--.    . .
T Consensus       352 ~~~~~v~ieIvelLIs~GAdIN~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs-~Ga~~dIN~kd~~G~T~Lh~~i~a~~~  430 (672)
T PHA02730        352 HYGDMVSIPILRCMLDNGATMDKTTDNNYPLHDYFVNNNNIVDVNVVRFIVE-NNGHMAINHVSNNGRLCMYGLILSRFN  430 (672)
T ss_pred             hcCCcCcHHHHHHHHHCCCCCCcCCCCCcHHHHHHHHcCCcchHHHHHHHHH-cCCCccccccccCCCchHhHHHHHHhc
Confidence                            33     2456788888877664    788888888 776  566655443331100    0 0


Q ss_pred             -------cc---hhhhhhHH-----HHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeecc-CCceeEEEeecC-
Q psy12892        245 -------VG---PVQAYLYQ-----VYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTV-DGTLILYYRGKD-  307 (315)
Q Consensus       245 -------~~---~~~~~~~~-----~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~-~g~t~l~~A~~~-  307 (315)
                             ..   ....++..     +.++..|.||||+|+..   ++.+++++|+++|++++.+|. .|.|||++|+.. 
T Consensus       431 n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~---~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~  507 (672)
T PHA02730        431 NCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDV---NNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRR  507 (672)
T ss_pred             cccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhh
Confidence                   00   01122322     25677888999999888   888889999999999888886 588899888864 


Q ss_pred             -chhhhhcC
Q psy12892        308 -SKAQIEEL  315 (315)
Q Consensus       308 -~~~~~~~l  315 (315)
                       ++.+++++
T Consensus       508 ~~~~eIv~~  516 (672)
T PHA02730        508 ENKTKLVDL  516 (672)
T ss_pred             cCcHHHHHH
Confidence             67777763

>KOG4412|consensus

Probab=100.00  E-value=4.6e-39  Score=225.60  Aligned_cols=184  Identities=29%  Similarity=0.400  Sum_probs=167.3

Q ss_pred             hhhhchhhcccccc-CCCcHHHHHHHcCCHHHHHHHH-HcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhc-cCCCcc
Q psy12892          5 LSTQTAEQLKATTI-NGDTALHLAARKRDLDMVRILV-DYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA-KANASI   81 (315)
Q Consensus         5 l~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~   81 (315)
                      ++...+..++.++. +|+|||||||..|..+++.+|+ +.+..++.+|..|+||||.|+..|+-++|+.|+.+ |++++.
T Consensus        22 l~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna  101 (226)
T KOG4412|consen   22 LIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNA  101 (226)
T ss_pred             HHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcce
Confidence            34455566788777 9999999999999999999999 55888999999999999999999999999999988 999998


Q ss_pred             ccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy12892         82 TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLA  161 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  161 (315)
                      ...                      .|.||||+|+..|..+++++|++.|+.++..|..|.||||.|+..|..+++++|+
T Consensus       102 ~tn----------------------~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen  102 TTN----------------------GGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             ecC----------------------CCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHH
Confidence            887                      7999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHc
Q psy12892        162 DKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMY  212 (315)
Q Consensus       162 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~  212 (315)
                      .. ++.++..|..|+||||.|..-++.++..+|+.++      ++.| ||+..|+.-
T Consensus       160 ~~-~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  160 SQ-GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             hc-CCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHHH
Confidence            95 9999999999999999998888999999999887      5566 888777643

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.8e-38  Score=279.21  Aligned_cols=299  Identities=14%  Similarity=0.112  Sum_probs=217.0

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcC-----------------------------------CHHHHHHHHHcCCcc
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKR-----------------------------------DLDMVRILVDYGTSV   46 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~-----------------------------------~~~~v~~Ll~~g~~~   46 (315)
                      .++|++++. +++.++..|.||||+|+..|                                   +.++|++|+++|+++
T Consensus        51 v~~Ll~~ga-~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadi  129 (661)
T PHA02917         51 VKLLLDSGT-NPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDL  129 (661)
T ss_pred             HHHHHHCCC-CccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCC
Confidence            466776654 57888888888888777643                                   567788888889999


Q ss_pred             cccCCCCChHHHHHH--hcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHh-------
Q psy12892         47 DIQNGEGQTALHIAS--AEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASA-------  117 (315)
Q Consensus        47 ~~~~~~g~t~l~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~-------  117 (315)
                      +..|..|.||||.|+  ..|+.+++++|+++|++++..+..+-....       . .......+.||||+|+.       
T Consensus       130 n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~-------~-~~~~~~~~~t~L~~a~~~~~~~~~  201 (661)
T PHA02917        130 SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYA-------Y-DDYQPRNCGTVLHLYIISHLYSES  201 (661)
T ss_pred             CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccc-------c-ccccccccccHHHHHHhhcccccc
Confidence            988889999998543  467899999999999988755432100000       0 00001134699999986       


Q ss_pred             ----cCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCH--HHHHHHHHhcCcccc----ccccCCccHHHHHHH---
Q psy12892        118 ----EGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHA--SIIELLADKFRASIF----ERTKENYNVLHLAAM---  184 (315)
Q Consensus       118 ----~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~Ll~~~~~~~~----~~~~~~~~~l~~a~~---  184 (315)
                          .++.+++++|++.|++++..+..|.||||+|+..|+.  +++++|++  |++++    ..+..+.+++++|+.   
T Consensus       202 ~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~--g~d~~~~~~~~~~~~~~~~~~a~yl~~  279 (661)
T PHA02917        202 DTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK--GIDNTAYSYIDDLTCCTRGIMADYLNS  279 (661)
T ss_pred             cccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh--CCcccccccccCcccccchHHHHHHHh
Confidence                4588999999999999999999999999999999985  79999975  77664    344556777888873   


Q ss_pred             ----cC--cHHHHHHHHhcCCCCC-------------------------CcHHHH---HHHcCC--HHHHHHHHhccCCc
Q psy12892        185 ----YS--REDVVKLLLNKKGIEN-------------------------YNVLHL---AAMYSR--EDVVKLLLNKKGIN  228 (315)
Q Consensus       185 ----~~--~~~~~~~Ll~~~~~~~-------------------------~~~l~~---A~~~~~--~~~~~~Ll~~~~~~  228 (315)
                          ..  +.+++++|++.|...+                         .+++|.   ++.+|.  .+++++|++ .|++
T Consensus       280 ~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~-~GAd  358 (661)
T PHA02917        280 DYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLE-YGAV  358 (661)
T ss_pred             hccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHH-cCCC
Confidence                11  6789999998883221                         122222   333554  568999998 8888


Q ss_pred             cccCCCCCC---------------------------CCCCccccch-----------------------------hhhhh
Q psy12892        229 VAALGGEDL---------------------------TGRPDLTVGP-----------------------------VQAYL  252 (315)
Q Consensus       229 ~~~~~~~~~---------------------------~~~~~~~~~~-----------------------------~~~~~  252 (315)
                      ++.++..+.                           .+.+|+....                             ....+
T Consensus       359 vn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L  438 (661)
T PHA02917        359 VNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINIC  438 (661)
T ss_pred             CCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHH
Confidence            776642221                           1656654210                             11223


Q ss_pred             HH-----HHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeec-CchhhhhcC
Q psy12892        253 YQ-----VYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGK-DSKAQIEEL  315 (315)
Q Consensus       253 ~~-----~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~-~~~~~~~~l  315 (315)
                      ..     +.++..|+||||+|+..   ++.+++++|+++|+|++.+|..|.|||++|+. .++.+++++
T Consensus       439 l~~GAdIN~kd~~G~TpLh~Aa~~---~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~  504 (661)
T PHA02917        439 LPYLKDINMIDKRGETLLHKAVRY---NKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKM  504 (661)
T ss_pred             HHCCCCCCCCCCCCcCHHHHHHHc---CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHH
Confidence            33     25677899999999999   99999999999999999999999999999995 678887753

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.1e-37  Score=263.36  Aligned_cols=238  Identities=22%  Similarity=0.290  Sum_probs=205.2

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcc
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI   81 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~   81 (315)
                      +++|++.+. +++.++.+|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+.+++++|++.|+....
T Consensus        18 v~~Ll~~g~-~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~   96 (413)
T PHA02875         18 ARRLLDIGI-NPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADD   96 (413)
T ss_pred             HHHHHHCCC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccc
Confidence            567777654 5889999999999999999999999999999999998888999999999999999999999999987653


Q ss_pred             ccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy12892         82 TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLA  161 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  161 (315)
                      ....                     .|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+
T Consensus        97 ~~~~---------------------~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll  155 (413)
T PHA02875         97 VFYK---------------------DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI  155 (413)
T ss_pred             cccC---------------------CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3222                     6899999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCC-CCcHHHHHHHcCCHHHHHHHHhccCCccccCCC
Q psy12892        162 DKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIE-NYNVLHLAAMYSREDVVKLLLNKKGINVAALGG  234 (315)
Q Consensus       162 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~-~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  234 (315)
                      ++ |++++..+..|.||||+|+..|+.+++++|++.|      +.. +.+|+|+|+..++.+++++|++ .|+|++....
T Consensus       156 ~~-g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~-~gad~n~~~~  233 (413)
T PHA02875        156 DH-KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK-RGADCNIMFM  233 (413)
T ss_pred             hc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH-CCcCcchHhh
Confidence            96 9999999999999999999999999999999987      223 3589999999999999999999 9999987421


Q ss_pred             CCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHh
Q psy12892        235 EDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLS  285 (315)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~  285 (315)
                                            .+..+.||++.++........+.++.++.
T Consensus       234 ----------------------~~~~~~t~l~~~~~~~~~~~~~~~~~li~  262 (413)
T PHA02875        234 ----------------------IEGEECTILDMICNMCTNLESEAIDALIA  262 (413)
T ss_pred             ----------------------cCCCchHHHHHHHhhcCCcccHHHHHHHH
Confidence                                  13456677776543311144566666654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-37  Score=269.85  Aligned_cols=240  Identities=15%  Similarity=0.253  Sum_probs=213.6

Q ss_pred             ChhHhhhhchhhccccccCCCcHHHHHHHc-----CCHHHHHHHHHcCCcccccCCCCChHHHHHHhcC---CHHHHHHH
Q psy12892          1 IWELLSTQTAEQLKATTINGDTALHLAARK-----RDLDMVRILVDYGTSVDIQNGEGQTALHIASAEG---DEALVKYF   72 (315)
Q Consensus         1 ~~~~l~~~~~~~~~~~~~~g~t~L~~A~~~-----~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~---~~~~v~~L   72 (315)
                      ++++|++++. ++|.+|..|.||||.|+..     +..+++++|+++|++++..|..|.||||+|+..+   +.+++++|
T Consensus        53 iv~~Ll~~Ga-dvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~L  131 (489)
T PHA02798         53 IVKLFINLGA-NVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFM  131 (489)
T ss_pred             HHHHHHHCCC-CCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHH
Confidence            4678888876 6999999999999999864     6799999999999999999999999999999875   78999999


Q ss_pred             HhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCC---HHHHHHHHhCCCCcccCC-CCCCcHHHHH
Q psy12892         73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD---EALVKYFYGAKANASITD-HQDRTPMHLA  148 (315)
Q Consensus        73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~---~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a  148 (315)
                      +++|++++..+.                      .|.||||+|+..++   .+++++|++.|++++..+ ..|.||+|.+
T Consensus       132 l~~Gadvn~~d~----------------------~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~  189 (489)
T PHA02798        132 IENGADTTLLDK----------------------DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCY  189 (489)
T ss_pred             HHcCCCccccCC----------------------CCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHH
Confidence            999999998887                      79999999999987   999999999999999874 5788999998


Q ss_pred             HHc----CCHHHHHHHHHhcCccccccccCCccHHH-------HHHHcCcHHHHHHHHhc-----CCCCCCcHHHHHHHc
Q psy12892        149 AEN----GHASIIELLADKFRASIFERTKENYNVLH-------LAAMYSREDVVKLLLNK-----KGIENYNVLHLAAMY  212 (315)
Q Consensus       149 ~~~----~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~-------~a~~~~~~~~~~~Ll~~-----~~~~~~~~l~~A~~~  212 (315)
                      +..    ++.+++++|+++ |++++..+..+.++++       .+...+..+++.+|+..     .+..|.||||.|+.+
T Consensus       190 ~~~~~~~~~~~ivk~Li~~-Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~  268 (489)
T PHA02798        190 FKYNIDRIDADILKLFVDN-GFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSH  268 (489)
T ss_pred             HHhccccCCHHHHHHHHHC-CCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHc
Confidence            764    479999999996 9999998888888876       23455677888888753     366799999999999


Q ss_pred             CCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceee
Q psy12892        213 SREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIR  292 (315)
Q Consensus       213 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~  292 (315)
                      ++.+++++|++ .|+|++.+                         +..|+||||+|+..   ++.++++.|+++|++++.
T Consensus       269 ~~~~~v~~LL~-~GAdin~~-------------------------d~~G~TpL~~A~~~---~~~~iv~~lL~~~~~~~~  319 (489)
T PHA02798        269 NNRKIFEYLLQ-LGGDINII-------------------------TELGNTCLFTAFEN---ESKFIFNSILNKKPNKNT  319 (489)
T ss_pred             CcHHHHHHHHH-cCCccccc-------------------------CCCCCcHHHHHHHc---CcHHHHHHHHccCCCHHH
Confidence            99999999999 99999984                         78899999999999   999999999999999874


Q ss_pred             e
Q psy12892        293 M  293 (315)
Q Consensus       293 ~  293 (315)
                      .
T Consensus       320 i  320 (489)
T PHA02798        320 I  320 (489)
T ss_pred             H
Confidence            4

>KOG0508|consensus

Probab=100.00  E-value=2.3e-37  Score=247.58  Aligned_cols=159  Identities=29%  Similarity=0.424  Sum_probs=150.7

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHH
Q psy12892         13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIA   92 (315)
Q Consensus        13 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   92 (315)
                      ++...+.|.+||..|+..|++++||.|+++|++||..+....|||..||..|+.++++||+++|+++++.+.        
T Consensus        77 FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~Ianr--------  148 (615)
T KOG0508|consen   77 FDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANR--------  148 (615)
T ss_pred             eCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCccccc--------
Confidence            666778999999999999999999999999999999989899999999999999999999999999999987        


Q ss_pred             hhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccc
Q psy12892         93 AAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERT  172 (315)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  172 (315)
                                    .|.|.||+|+..|+.+++++|++.|++++..+..|+|+||.|++.|+.+++++|+.+ |+.++ .|
T Consensus       149 --------------hGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~-ga~i~-~d  212 (615)
T KOG0508|consen  149 --------------HGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKH-GAKID-VD  212 (615)
T ss_pred             --------------CCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhC-Cceee-ec
Confidence                          799999999999999999999999999999999999999999999999999999995 77664 56


Q ss_pred             cCCccHHHHHHHcCcHHHHHHHH
Q psy12892        173 KENYNVLHLAAMYSREDVVKLLL  195 (315)
Q Consensus       173 ~~~~~~l~~a~~~~~~~~~~~Ll  195 (315)
                      ..|.|||..|+..|+.++|++|+
T Consensus       213 ~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  213 GHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             CCCCchHHHHhhhcchHHHHHHh
Confidence            67999999999999999999987

>KOG4412|consensus

Probab=100.00  E-value=2.1e-37  Score=217.31  Aligned_cols=190  Identities=25%  Similarity=0.334  Sum_probs=172.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCC-cccccCC-CCChHHHHHHhcCCHHHHHHHHh-ccCCCccccccchhhHHHhhh
Q psy12892         19 NGDTALHLAARKRDLDMVRILVDYGT-SVDIQNG-EGQTALHIASAEGDEALVKYFYG-AKANASITDHQGIQRDIAAAG   95 (315)
Q Consensus        19 ~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~   95 (315)
                      .+.++.+.+|+.....-++.+++... .++.++. +|+||||+||+.|+.+++.+|++ .+..++..+.           
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd-----------   70 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD-----------   70 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccc-----------
Confidence            46788899999998888999988866 4666655 99999999999999999999994 4555555544           


Q ss_pred             hhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhC-CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccC
Q psy12892         96 TSVLANCLLMGEGQTALHIASAEGDEALVKYFYGA-KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE  174 (315)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  174 (315)
                                 .|+||||+|+..|+.++|+.|+.+ |++++..+..|+|+||+|+..|+.++.++|+++ |+.++.+|..
T Consensus        71 -----------aGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~-ga~i~~kD~~  138 (226)
T KOG4412|consen   71 -----------AGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEK-GALIRIKDKQ  138 (226)
T ss_pred             -----------cCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhc-CCCCcccccc
Confidence                       799999999999999999999988 999999999999999999999999999999997 9999999999


Q ss_pred             CccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccC
Q psy12892        175 NYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAAL  232 (315)
Q Consensus       175 ~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  232 (315)
                      +.||||.|+..|..+++++|+..+      +..|+||||.|..-++.++...|++ .|+++...
T Consensus       139 ~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~-~gAd~~~e  201 (226)
T KOG4412|consen  139 GQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVR-AGADTDRE  201 (226)
T ss_pred             cCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHH-hccceeec
Confidence            999999999999999999999876      8899999999988999999999999 99999884

>KOG0508|consensus

Probab=100.00  E-value=1.8e-37  Score=248.16  Aligned_cols=187  Identities=29%  Similarity=0.365  Sum_probs=172.4

Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHHc-CCcc--------cccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccc
Q psy12892         14 KATTINGDTALHLAARKRDLDMVRILVDY-GTSV--------DIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDH   84 (315)
Q Consensus        14 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~--------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~   84 (315)
                      -....+|.|||-+||++|+.++|++|+++ ++++        +-...+|-+||-.|+..||.++|+.|+++|+++|....
T Consensus        36 ~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~  115 (615)
T KOG0508|consen   36 IGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTR  115 (615)
T ss_pred             hccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccc
Confidence            33456899999999999999999999985 5554        33456788899999999999999999999999998775


Q ss_pred             cchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhc
Q psy12892         85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKF  164 (315)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  164 (315)
                                            ...|||.-|+.-|+.+++++|+++|++++..++.|.|+|++|+..|+.+++++|++. 
T Consensus       116 ----------------------TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~-  172 (615)
T KOG0508|consen  116 ----------------------TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQ-  172 (615)
T ss_pred             ----------------------cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHh-
Confidence                                  566999999999999999999999999999999999999999999999999999996 


Q ss_pred             CccccccccCCccHHHHHHHcCcHHHHHHHHhcC-----CCCCCcHHHHHHHcCCHHHHHHHHh
Q psy12892        165 RASIFERTKENYNVLHLAAMYSREDVVKLLLNKK-----GIENYNVLHLAAMYSREDVVKLLLN  223 (315)
Q Consensus       165 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-----~~~~~~~l~~A~~~~~~~~~~~Ll~  223 (315)
                      |++++.++..|+|+||.+++.|+.+++++|+..+     +..|.|||..|+..|..+++++|++
T Consensus       173 gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  173 GADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             CCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999999999999999999988     6679999999999999999999995

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-36  Score=263.36  Aligned_cols=265  Identities=21%  Similarity=0.220  Sum_probs=211.1

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcc
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI   81 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~   81 (315)
                      +++|++.+. ++|.+|..|.||||+||..|+.++++.|++.+.+.+.  ..+.++++.|+..++.+++++|+..+.+...
T Consensus        53 vk~Ll~~ga-dvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~  129 (477)
T PHA02878         53 VKSLLTRGH-NVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQ  129 (477)
T ss_pred             HHHHHHCCC-CCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcc
Confidence            567777654 6999999999999999999999999999998766544  5678999999999999999999877543221


Q ss_pred             ccccchhhHHHhh--hhhhHHhh---------hhccC-CChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHH
Q psy12892         82 TDHQGIQRDIAAA--GTSVLANC---------LLMGE-GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAA  149 (315)
Q Consensus        82 ~~~~~~~~~~~~~--~~~~~~~~---------~~~~~-~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~  149 (315)
                      .............  ........         ..+.. |.||||+|+..|+.+++++|++.|++++..+..|.||||.|+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~  209 (477)
T PHA02878        130 TIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAV  209 (477)
T ss_pred             cCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            1110000000000  00001111         11234 999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHhcCccccccccCCccHHHHHHHc-CcHHHHHHHHhcC------C-CCCCcHHHHHHHcCCHHHHHHH
Q psy12892        150 ENGHASIIELLADKFRASIFERTKENYNVLHLAAMY-SREDVVKLLLNKK------G-IENYNVLHLAAMYSREDVVKLL  221 (315)
Q Consensus       150 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~Ll~~~------~-~~~~~~l~~A~~~~~~~~~~~L  221 (315)
                      ..|+.+++++|++. |++++..+..|.||||+|+.. ++.+++++|++.|      + ..|.||||.|  .++.+++++|
T Consensus       210 ~~~~~~iv~~Ll~~-ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~L  286 (477)
T PHA02878        210 KHYNKPIVHILLEN-GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLL  286 (477)
T ss_pred             HhCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHH
Confidence            99999999999996 999999999999999999975 6899999999988      2 3689999999  5778999999


Q ss_pred             HhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhh-----ccceeeeccC
Q psy12892        222 LNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLST-----AGREIRMTVD  296 (315)
Q Consensus       222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~-----g~~~~~~~~~  296 (315)
                      ++ .|+|++..                         +..|.||||+|+...  ...+++++|+.+     +.+++.++..
T Consensus       287 l~-~gadin~~-------------------------d~~g~TpL~~A~~~~--~~~~~~~~li~~~~~~~~~~~~~~~~~  338 (477)
T PHA02878        287 LE-YGADINSL-------------------------NSYKLTPLSSAVKQY--LCINIGRILISNICLLKRIKPDIKNSE  338 (477)
T ss_pred             HH-CCCCCCCc-------------------------CCCCCCHHHHHHHHc--CccchHHHHHHHHHHHHhccCcccCcH
Confidence            99 99999985                         788999999999751  456778888766     4567777776


Q ss_pred             Ccee
Q psy12892        297 GTLI  300 (315)
Q Consensus       297 g~t~  300 (315)
                      |..+
T Consensus       339 g~~~  342 (477)
T PHA02878        339 GFID  342 (477)
T ss_pred             HHHH
Confidence            6543

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.4e-36  Score=262.27  Aligned_cols=236  Identities=17%  Similarity=0.245  Sum_probs=205.5

Q ss_pred             ChhHhhhhchhhccccccCCCcHHHHHHHcC------CHHHHHHHHHcCCcccccCCCCChHHHHHHhc---CCHHHHHH
Q psy12892          1 IWELLSTQTAEQLKATTINGDTALHLAARKR------DLDMVRILVDYGTSVDIQNGEGQTALHIASAE---GDEALVKY   71 (315)
Q Consensus         1 ~~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~------~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~---~~~~~v~~   71 (315)
                      +.++|++++. ++|.++ .|.||||.|+..+      ..+++++|+++|++++..|..|.||||.|+..   ++.+++++
T Consensus        52 iv~~Ll~~GA-dvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~  129 (494)
T PHA02989         52 IVKLLIDNGA-DVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRF  129 (494)
T ss_pred             HHHHHHHcCC-CccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHH
Confidence            3577888765 688887 6799999998754      47899999999999999999999999988765   68999999


Q ss_pred             HHhccCCC-ccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhc--CCHHHHHHHHhCCCCccc-CCCCCCcHHHH
Q psy12892         72 FYGAKANA-SITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE--GDEALVKYFYGAKANASI-TDHQDRTPMHL  147 (315)
Q Consensus        72 Ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~--~~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~  147 (315)
                      |+++|+++ +..+.                      .|.||||+|+..  ++.+++++|++.|++++. .+..|.||+|.
T Consensus       130 Ll~~Gadin~~~d~----------------------~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~  187 (494)
T PHA02989        130 LLSKGINVNDVKNS----------------------RGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNI  187 (494)
T ss_pred             HHHCCCCcccccCC----------------------CCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHH
Confidence            99999999 66665                      799999998764  589999999999999988 57889999999


Q ss_pred             HHHcC----CHHHHHHHHHhcCccccccccCCccHHHHHHHcC------cHHHHHHHHhc-----CCCCCCcHHHHHHHc
Q psy12892        148 AAENG----HASIIELLADKFRASIFERTKENYNVLHLAAMYS------REDVVKLLLNK-----KGIENYNVLHLAAMY  212 (315)
Q Consensus       148 a~~~~----~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~------~~~~~~~Ll~~-----~~~~~~~~l~~A~~~  212 (315)
                      |+..+    +.+++++|+++ |++++..+..+.++++.++..+      ..+++++|+..     .+..|.||||+|+..
T Consensus       188 a~~~~~~~~~~~iv~~Ll~~-Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~  266 (494)
T PHA02989        188 YLRNDIDVISIKVIKYLIKK-GVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKV  266 (494)
T ss_pred             HHhcccccccHHHHHHHHhC-CCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHh
Confidence            98764    89999999997 9999999998999999876543      46777777643     267799999999999


Q ss_pred             CCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccce
Q psy12892        213 SREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGRE  290 (315)
Q Consensus       213 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~  290 (315)
                      ++.+++++|++ .|+|++.+                         +..|+||||+|++.   ++.+++++|++.+...
T Consensus       267 ~~~~~v~~LL~-~Gadin~~-------------------------d~~G~TpL~~A~~~---~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        267 DNYEAFNYLLK-LGDDIYNV-------------------------SKDGDTVLTYAIKH---GNIDMLNRILQLKPGK  315 (494)
T ss_pred             cCHHHHHHHHH-cCCCcccc-------------------------CCCCCCHHHHHHHc---CCHHHHHHHHhcCCCh
Confidence            99999999999 99999984                         78899999999999   9999999999987544

>KOG4177|consensus

Probab=100.00  E-value=5.9e-38  Score=280.92  Aligned_cols=276  Identities=27%  Similarity=0.343  Sum_probs=221.8

Q ss_pred             hhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhh
Q psy12892         10 AEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQR   89 (315)
Q Consensus        10 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   89 (315)
                      +.++..+|..|-||||.|+..|+++++.+++.+|+.++..+..|+||+|.|+..+..+++++|++.|+++..+....-+.
T Consensus       232 gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~  311 (1143)
T KOG4177|consen  232 GADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTP  311 (1143)
T ss_pred             cCcCCcccccCccHHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhccchhhhHhhhhccCcccccccccccCh
Confidence            35699999999999999999999999999999999999999999999999999999999999999999877665443222


Q ss_pred             HHHhhhh-----------------------------------hhH---------HhhhhccCCChHHHHHHhcCCHHHHH
Q psy12892         90 DIAAAGT-----------------------------------SVL---------ANCLLMGEGQTALHIASAEGDEALVK  125 (315)
Q Consensus        90 ~~~~~~~-----------------------------------~~~---------~~~~~~~~~~~~l~~A~~~~~~~~v~  125 (315)
                      .......                                   ...         .....++.+.+|++.|+..|..+.++
T Consensus       312 l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~  391 (1143)
T KOG4177|consen  312 LHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVE  391 (1143)
T ss_pred             hhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHH
Confidence            1111000                                   000         00011245666777777777777777


Q ss_pred             HHHhCCCCcc---------------------------------cCCCCCCcHHHHHHHcC-CHHHHHHHHHhcCcccccc
Q psy12892        126 YFYGAKANAS---------------------------------ITDHQDRTPMHLAAENG-HASIIELLADKFRASIFER  171 (315)
Q Consensus       126 ~Ll~~~~~~~---------------------------------~~~~~~~~~l~~a~~~~-~~~~~~~Ll~~~~~~~~~~  171 (315)
                      .++..|.+++                                 ..+..|.|++|.|+..| ..+....+++ ++.+++..
T Consensus       392 Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~-~g~~~n~~  470 (1143)
T KOG4177|consen  392 LLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQ-YGADPNAV  470 (1143)
T ss_pred             hhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhh-cCCCcchh
Confidence            6666655554                                 34445777788888887 5666666666 58888888


Q ss_pred             ccCCccHHHHHHHcCcHHHHHHHHhcC---------------------------------------CCCCCcHHHHHHHc
Q psy12892        172 TKENYNVLHLAAMYSREDVVKLLLNKK---------------------------------------GIENYNVLHLAAMY  212 (315)
Q Consensus       172 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~---------------------------------------~~~~~~~l~~A~~~  212 (315)
                      ...|.||||+|+..|+.++++.+++.+                                       ...++||||.|+.+
T Consensus       471 s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~  550 (1143)
T KOG4177|consen  471 SKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHY  550 (1143)
T ss_pred             ccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhc
Confidence            888899999999999888888887643                                       45688999999999


Q ss_pred             CCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceee
Q psy12892        213 SREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIR  292 (315)
Q Consensus       213 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~  292 (315)
                      |+.++|++|++ +|+|++.+                         ++.|+||||.|+..   |..+++++|+++|+++|.
T Consensus       551 g~v~~VkfLLe-~gAdv~ak-------------------------~~~G~TPLH~Aa~~---G~~~i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  551 GNVDLVKFLLE-HGADVNAK-------------------------DKLGYTPLHQAAQQ---GHNDIAELLLKHGASVNA  601 (1143)
T ss_pred             CCchHHHHhhh-CCcccccc-------------------------CCCCCChhhHHHHc---ChHHHHHHHHHcCCCCCc
Confidence            99999999999 99999995                         78899999999999   999999999999999999


Q ss_pred             eccCCceeEEEeecCchhhhhcC
Q psy12892        293 MTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       293 ~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                      .|.+|.|||++|++.|+.+++++
T Consensus       602 ~d~~g~TpL~iA~~lg~~~~~k~  624 (1143)
T KOG4177|consen  602 ADLDGFTPLHIAVRLGYLSVVKL  624 (1143)
T ss_pred             ccccCcchhHHHHHhcccchhhH
Confidence            99999999999999999998763

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=4e-35  Score=253.24  Aligned_cols=261  Identities=15%  Similarity=0.126  Sum_probs=183.0

Q ss_pred             hhHhhhhchhhcccccc-----CCCcHHHHHHHcCCHHHHHHHHHcCCcccc-------cCCCCC-hHHHHH------Hh
Q psy12892          2 WELLSTQTAEQLKATTI-----NGDTALHLAARKRDLDMVRILVDYGTSVDI-------QNGEGQ-TALHIA------SA   62 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~-t~l~~A------~~   62 (315)
                      +++|+.....+++....     .|.+|++.+...++.++|++|+++|++++.       .+.... |.||++      ..
T Consensus       132 vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~  211 (672)
T PHA02730        132 LKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESE  211 (672)
T ss_pred             HHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhh
Confidence            45666544344444422     677888888888888888888888887741       222232 344433      34


Q ss_pred             cCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHH--HHhcCCHHHHHHHHh-----------
Q psy12892         63 EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHI--ASAEGDEALVKYFYG-----------  129 (315)
Q Consensus        63 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--A~~~~~~~~v~~Ll~-----------  129 (315)
                      +++.+++++|+++|++++..+.                      .|.||||+  +...++.|++++|++           
T Consensus       212 ~n~~eiv~lLIs~GadIN~kd~----------------------~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~  269 (672)
T PHA02730        212 SLSKDVIKCLIDNNVSIHGRDE----------------------GGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDI  269 (672)
T ss_pred             ccCHHHHHHHHHCCCCCCCCCC----------------------CCCCHHHHHHHcCcccHHHHHHHHhccccccccccc
Confidence            4677788888888888777776                      79999995  445567999999999           


Q ss_pred             ---------------------CCCCccc--------------------CCCCCCc---------------------HHHH
Q psy12892        130 ---------------------AKANASI--------------------TDHQDRT---------------------PMHL  147 (315)
Q Consensus       130 ---------------------~~~~~~~--------------------~~~~~~~---------------------~l~~  147 (315)
                                           .|++...                    .+..|.+                     .|+.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~  349 (672)
T PHA02730        270 SQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLIN  349 (672)
T ss_pred             cchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHH
Confidence                                 6766644                    3444533                     5555


Q ss_pred             HHHcC---CHHHHHHHHHhcCccccccccCCccHHHHHHHcCc----HHHHHHHHhcCC--------CCCCcHHHH---H
Q psy12892        148 AAENG---HASIIELLADKFRASIFERTKENYNVLHLAAMYSR----EDVVKLLLNKKG--------IENYNVLHL---A  209 (315)
Q Consensus       148 a~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~~~--------~~~~~~l~~---A  209 (315)
                      -.+.+   +.+++++|+++ |++++.. ..|.||||+|+..++    .+++++|+++|.        ..|.||||.   |
T Consensus       350 Y~~~~~~v~ieIvelLIs~-GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a  427 (672)
T PHA02730        350 YLHYGDMVSIPILRCMLDN-GATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILS  427 (672)
T ss_pred             HHhcCCcCcHHHHHHHHHC-CCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHH
Confidence            56655   58999999997 9999985 789999999998874    899999999873        568999984   3


Q ss_pred             HHcC---------CHHHHHHHHhccCCccccCCCCCCCCCCccccc------hhhhhhHHH-----HHhh-hcCCcceee
Q psy12892        210 AMYS---------REDVVKLLLNKKGINVAALGGEDLTGRPDLTVG------PVQAYLYQV-----YLIS-KQQTAVHLV  268 (315)
Q Consensus       210 ~~~~---------~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-----~~~~-~~~t~L~~A  268 (315)
                      ...+         ..+++++|++ +|++++.++..+.+   ++..+      ....++...     .++. .|.||||.|
T Consensus       428 ~~~n~~~~~~e~~~~~ivk~LIs-~GADINakD~~G~T---PLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~A  503 (672)
T PHA02730        428 RFNNCGYHCYETILIDVFDILSK-YMDDIDMIDNENKT---LLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKS  503 (672)
T ss_pred             HhccccccccchhHHHHHHHHHh-cccchhccCCCCCC---HHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHH
Confidence            3232         2367999999 99999998755443   22211      122333332     3453 589999999


Q ss_pred             eccCCCCcHHHHHHHHhhcccee
Q psy12892        269 CSRQTGTATSILRALLSTAGREI  291 (315)
Q Consensus       269 ~~~~~~~~~~~i~~Ll~~g~~~~  291 (315)
                      +.... ++.+++++|+++|+++.
T Consensus       504 a~~~~-~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        504 SYRRE-NKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             HHhhc-CcHHHHHHHHHcCCCHH
Confidence            87311 68999999999999876

>KOG0509|consensus

Probab=100.00  E-value=8.3e-36  Score=247.78  Aligned_cols=189  Identities=29%  Similarity=0.350  Sum_probs=163.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-CCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhh
Q psy12892         20 GDTALHLAARKRDLDMVRILVDY-GTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSV   98 (315)
Q Consensus        20 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   98 (315)
                      -..-++.|+..|.++.|+.|++. |.+++..|.+|.|+||+|+.+++.+++++|+++|+++|...-.             
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~-------------  110 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGV-------------  110 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCC-------------
Confidence            35568889999999999999999 9999999999999999999999999999999999999988754             


Q ss_pred             HHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccH
Q psy12892         99 LANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNV  178 (315)
Q Consensus        99 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  178 (315)
                              -+.||||+|+++|+..++++|+++|++++..|.+|.+|+|.|++.|+..++-+|+.+ +++++.+|.+|+||
T Consensus       111 --------l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~-~~d~d~~D~~grTp  181 (600)
T KOG0509|consen  111 --------LGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSK-GADIDLRDNNGRTP  181 (600)
T ss_pred             --------CCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHh-cccCCCcCCCCCCH
Confidence                    688999999999999999999999999999999999999999999999999999997 79999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcC-------CCCCCcHHHHHHHcCCHHHHHHHHhccCCcccc
Q psy12892        179 LHLAAMYSREDVVKLLLNKK-------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAA  231 (315)
Q Consensus       179 l~~a~~~~~~~~~~~Ll~~~-------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~  231 (315)
                      |++|+..|....++.|+.-+       +..|+||||.|+..|+..++..|++ .|.+.+.
T Consensus       182 LmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~-g~~~~d~  240 (600)
T KOG0509|consen  182 LMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLE-GGADLDK  240 (600)
T ss_pred             HHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhh-cCCcccc
Confidence            99999988766566666543       3556666666666666666663333 5555555

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-34  Score=246.69  Aligned_cols=288  Identities=11%  Similarity=0.074  Sum_probs=217.2

Q ss_pred             ccccccCCCcHHHHHH-HcCCHHHHHHHHHcCCcccccCCCCChHHHHHHh-cCCHHHHHHHHhccCCCccccccchhhH
Q psy12892         13 LKATTINGDTALHLAA-RKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA-EGDEALVKYFYGAKANASITDHQGIQRD   90 (315)
Q Consensus        13 ~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~~   90 (315)
                      .+.++.+|.+|+|+-+ ..|++|+|++|+++|++++.++..+.+|+++|+. .++.+++++|+++|+++......+.+..
T Consensus        64 ~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~  143 (631)
T PHA02792         64 VDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKII  143 (631)
T ss_pred             CCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchh
Confidence            5678899999998854 5789999999999999999999989999999965 6999999999999999776666555532


Q ss_pred             HHhhhh---hhHHhh-----------hhccCCChHHHHHHhcC-------CHHHHHHHHhCCCCcccCCCCCCcHHHHHH
Q psy12892         91 IAAAGT---SVLANC-----------LLMGEGQTALHIASAEG-------DEALVKYFYGAKANASITDHQDRTPMHLAA  149 (315)
Q Consensus        91 ~~~~~~---~~~~~~-----------~~~~~~~~~l~~A~~~~-------~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~  149 (315)
                      ......   ..+..+           ..+..|.||||+|+.++       +.++++.|+++|++++..+..|.||||+|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~  223 (631)
T PHA02792        144 IEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYV  223 (631)
T ss_pred             hhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHH
Confidence            222110   001111           23357999999999999       899999999999999999999999999999


Q ss_pred             HcC--CHHHHHHHHHhcCcccc-------------c------ccc-------CC--------------------------
Q psy12892        150 ENG--HASIIELLADKFRASIF-------------E------RTK-------EN--------------------------  175 (315)
Q Consensus       150 ~~~--~~~~~~~Ll~~~~~~~~-------------~------~~~-------~~--------------------------  175 (315)
                      .+.  ..++++.|++. ..+..             .      .|.       .|                          
T Consensus       224 ~~~~i~~ei~~~L~~~-~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~  302 (631)
T PHA02792        224 DKCDIKREIFDALFDS-NYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRY  302 (631)
T ss_pred             HcccchHHHHHHHHhc-cccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHH
Confidence            999  78899998873 11100             0      000       00                          


Q ss_pred             ----ccHHHHHHHcC--cHHHHHHHHhcCCC----CCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCcccc
Q psy12892        176 ----YNVLHLAAMYS--REDVVKLLLNKKGI----ENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTV  245 (315)
Q Consensus       176 ----~~~l~~a~~~~--~~~~~~~Ll~~~~~----~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~  245 (315)
                          +..||....++  +.+++++|++.|..    ....+++.|+..++.+++++|++ +|++++..+..+.. .+++..
T Consensus       303 ~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs-~GADIN~kD~~g~~-~TpLh~  380 (631)
T PHA02792        303 TDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILK-NGNVVVEDDDNIIN-IMPLFP  380 (631)
T ss_pred             hHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHH-cCCchhhhcCCCCC-hhHHHH
Confidence                01234444455  67888999988832    24567889999999999999999 99999987654321 111110


Q ss_pred             ------c---hhhhhhHH-----HHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeec
Q psy12892        246 ------G---PVQAYLYQ-----VYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGK  306 (315)
Q Consensus       246 ------~---~~~~~~~~-----~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~  306 (315)
                            .   .+...+..     +.++..|.||||+|+..   ++.+++++|+++|++++.+|..|.|||++|+.
T Consensus       381 A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~---~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        381 TLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIES---HSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHc---CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence                  0   01111211     25678899999999999   99999999999999999999999999999975

>KOG4177|consensus

Probab=100.00  E-value=2.5e-35  Score=264.13  Aligned_cols=278  Identities=26%  Similarity=0.371  Sum_probs=204.0

Q ss_pred             hhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhH
Q psy12892         11 EQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRD   90 (315)
Q Consensus        11 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~   90 (315)
                      .+.+..+..|.||+|.||..+.+++++.++.+|+++...|..|.+|||.|+..|+.+++.+++.+|+.++..+.      
T Consensus       200 ~~~~a~~~~~~tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~v------  273 (1143)
T KOG4177|consen  200 ADPNASALNGFTPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGASVNVSTV------  273 (1143)
T ss_pred             CCccccccCCCCchhhhccccccceeeeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhcccccCcccc------
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999887      


Q ss_pred             HHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccc
Q psy12892         91 IAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFE  170 (315)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~  170 (315)
                                      .+.||+|.|+..+..++.++|++.|+++...+....||+|.|...|..++++++++. +..++.
T Consensus       274 ----------------r~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~-~~~~~a  336 (1143)
T KOG4177|consen  274 ----------------RGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQA-GATPNA  336 (1143)
T ss_pred             ----------------cccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhc-cCCccc
Confidence                            577777777777777777777777777777776667777777766666666666664 666665


Q ss_pred             cccCCccHHHHHHHcCcHH---------------------------------HHHHHHhcC-------------------
Q psy12892        171 RTKENYNVLHLAAMYSRED---------------------------------VVKLLLNKK-------------------  198 (315)
Q Consensus       171 ~~~~~~~~l~~a~~~~~~~---------------------------------~~~~Ll~~~-------------------  198 (315)
                      .+..+.+|+|++++.++.+                                 ++++++.++                   
T Consensus       337 ar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~  416 (1143)
T KOG4177|consen  337 ARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAH  416 (1143)
T ss_pred             cCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhh
Confidence            5555555555555555555                                 444444433                   


Q ss_pred             --------------------CCCCCcHHHHHHHcC-CHHHHHHHHhccCCccccCCCCCCCCC---C-------------
Q psy12892        199 --------------------GIENYNVLHLAAMYS-REDVVKLLLNKKGINVAALGGEDLTGR---P-------------  241 (315)
Q Consensus       199 --------------------~~~~~~~l~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~~~---~-------------  241 (315)
                                          +..|.||+|.|+..+ ..++...+++ .|.+++.....+.++-   .             
T Consensus       417 ~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~-~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle  495 (1143)
T KOG4177|consen  417 YGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQ-YGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLE  495 (1143)
T ss_pred             ccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhh-cCCCcchhccccCcchhhhhccCCchHHHHhhh
Confidence                                223445555555544 4444444444 5555554444443300   0             


Q ss_pred             ---------ccccchhhhhhHH----------------HHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccC
Q psy12892        242 ---------DLTVGPVQAYLYQ----------------VYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVD  296 (315)
Q Consensus       242 ---------~~~~~~~~~~~~~----------------~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~  296 (315)
                               ....++++..-..                ..++..++||||.|+.+   |+.++|++||++|+|++.+++.
T Consensus       496 ~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~---g~v~~VkfLLe~gAdv~ak~~~  572 (1143)
T KOG4177|consen  496 GGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHY---GNVDLVKFLLEHGADVNAKDKL  572 (1143)
T ss_pred             cCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhc---CCchHHHHhhhCCccccccCCC
Confidence                     0001111100000                15567788999999999   9999999999999999999999


Q ss_pred             CceeEEEeecCchhhhhcC
Q psy12892        297 GTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       297 g~t~l~~A~~~~~~~~~~l  315 (315)
                      |+||||.|+..|+.++++|
T Consensus       573 G~TPLH~Aa~~G~~~i~~L  591 (1143)
T KOG4177|consen  573 GYTPLHQAAQQGHNDIAEL  591 (1143)
T ss_pred             CCChhhHHHHcChHHHHHH
Confidence            9999999999999999874

>KOG0509|consensus

Probab=100.00  E-value=6.2e-33  Score=230.77  Aligned_cols=185  Identities=30%  Similarity=0.409  Sum_probs=170.5

Q ss_pred             hhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccC-CCCChHHHHHHhcCCHHHHHHHHhccCCCcccc
Q psy12892          5 LSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQN-GEGQTALHIASAEGDEALVKYFYGAKANASITD   83 (315)
Q Consensus         5 l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~   83 (315)
                      +.+...++++..|.+|.|+||+|+.+++++++++|+++|+++|... .-+.||||+|+.+|+..++.+|+++||+++..+
T Consensus        63 lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D  142 (600)
T KOG0509|consen   63 LVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKD  142 (600)
T ss_pred             HHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceec
Confidence            3444467899999999999999999999999999999999999887 568899999999999999999999999999999


Q ss_pred             ccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q psy12892         84 HQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK  163 (315)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  163 (315)
                      .                      +|.+|+|+|+..++.-++-+++..+++++.+|.+|+|||++|+.+|+...+..|++ 
T Consensus       143 ~----------------------~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~-  199 (600)
T KOG0509|consen  143 K----------------------QGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLK-  199 (600)
T ss_pred             C----------------------CCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHH-
Confidence            8                      79999999999999999999999999999999999999999999999988999998 


Q ss_pred             cCccccccc-cCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHc
Q psy12892        164 FRASIFERT-KENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMY  212 (315)
Q Consensus       164 ~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~  212 (315)
                      +++.+...| ..|.||||+|+..|+..++.++++.+      +.+|.||+.+|...
T Consensus       200 f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  200 FGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             hcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            599999888 88999999999999999999555544      66789999999766

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-32  Score=235.03  Aligned_cols=287  Identities=15%  Similarity=0.122  Sum_probs=212.9

Q ss_pred             hHhhhhchhhccccccCCCcHHHHHHHcCC-HHHHHHHHHcCCcccccCCCCChHHHH-HHhcCCHHHHHHHHhccCCCc
Q psy12892          3 ELLSTQTAEQLKATTINGDTALHLAARKRD-LDMVRILVDYGTSVDIQNGEGQTALHI-ASAEGDEALVKYFYGAKANAS   80 (315)
Q Consensus         3 ~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~~~~~v~~Ll~~~~~~~   80 (315)
                      +.|++.+.+.+-  ...|.||||.-..+.+ ..-++.++.-|..++..+.+|.+++|+ |...|+.|+|++|+++|++++
T Consensus        22 ~~l~~~g~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN   99 (631)
T PHA02792         22 QSLIESGANPLY--EYDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEIN   99 (631)
T ss_pred             HHHHHcCCCccc--ccCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcc
Confidence            456666666555  4677899999877665 344556667777888889999999986 666789999999999999999


Q ss_pred             cccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHh-cCCHHHHHHHHhCCCCcc------------------------
Q psy12892         81 ITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASA-EGDEALVKYFYGAKANAS------------------------  135 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~-~~~~~~v~~Ll~~~~~~~------------------------  135 (315)
                      .++.                      .+.+|+++|+. .++.|++++|++.|+++.                        
T Consensus       100 ~~~n----------------------~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~  157 (631)
T PHA02792        100 SIKN----------------------GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDD  157 (631)
T ss_pred             cccC----------------------CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhh
Confidence            8876                      57789999966 689999999999998632                        


Q ss_pred             ------------cCCCCCCcHHHHHHHcC-------CHHHHHHHHHhcCccccccccCCccHHHHHHHcC--cHHHHHHH
Q psy12892        136 ------------ITDHQDRTPMHLAAENG-------HASIIELLADKFRASIFERTKENYNVLHLAAMYS--REDVVKLL  194 (315)
Q Consensus       136 ------------~~~~~~~~~l~~a~~~~-------~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~L  194 (315)
                                  ..+..|.||||+|+.++       +.++++.|+++ |++++..+..|.||||+|+.+.  +.+++++|
T Consensus       158 ~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~-g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L  236 (631)
T PHA02792        158 ELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISH-EKEMRYYTYREHTTLYYYVDKCDIKREIFDAL  236 (631)
T ss_pred             hccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhC-CCCcCccCCCCChHHHHHHHcccchHHHHHHH
Confidence                        23456999999999999       89999999997 9999999999999999999999  88999988


Q ss_pred             HhcC-------------------CC-------------CCC------------------------------cHHHHHHHc
Q psy12892        195 LNKK-------------------GI-------------ENY------------------------------NVLHLAAMY  212 (315)
Q Consensus       195 l~~~-------------------~~-------------~~~------------------------------~~l~~A~~~  212 (315)
                      ++.-                   ..             .|.                              -.||.-..+
T Consensus       237 ~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~  316 (631)
T PHA02792        237 FDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSY  316 (631)
T ss_pred             HhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhc
Confidence            7422                   00             000                              123333334


Q ss_pred             C--CHHHHHHHHhccCCccccCCCCCCC-CCCccccchhhhhhHHH-----HHhhh--cCCcceeeeccCCCCcHHHHHH
Q psy12892        213 S--REDVVKLLLNKKGINVAALGGEDLT-GRPDLTVGPVQAYLYQV-----YLISK--QQTAVHLVCSRQTGTATSILRA  282 (315)
Q Consensus       213 ~--~~~~~~~Ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~--~~t~L~~A~~~~~~~~~~~i~~  282 (315)
                      +  +.+++++|++ .|++.......... .........+..++...     .++..  +.||||+|+........+++++
T Consensus       317 ~~v~ieiIK~LId-~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~Ilkl  395 (631)
T PHA02792        317 HTVYINVIKCMID-EGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKL  395 (631)
T ss_pred             CCccHHHHHHHHH-CCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHH
Confidence            3  6799999999 99987521100000 00001122333444442     34444  4699998877622123457899


Q ss_pred             HHhhccceeeeccCCceeEEEeecCchhhhhcC
Q psy12892        283 LLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       283 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                      |+++|+|+|.+|..|.||||+|++.++.+++++
T Consensus       396 LIs~GADIN~kD~~G~TPLh~Aa~~~n~eivel  428 (631)
T PHA02792        396 CKPYIDDINKIDKHGRSILYYCIESHSVSLVEW  428 (631)
T ss_pred             HHhcCCccccccccCcchHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999874

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=9.6e-31  Score=216.14  Aligned_cols=199  Identities=15%  Similarity=0.116  Sum_probs=177.1

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCccc------ccCCCCChHHHHHHh--cCCHHHHHHHH
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVD------IQNGEGQTALHIASA--EGDEALVKYFY   73 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~l~~A~~--~~~~~~v~~Ll   73 (315)
                      .+|++.++. ++|.+..+|     +|+..+..|++++|+++|++++      .++..++|+||+|+.  .|+.+++++|+
T Consensus        65 ~~~~~~~~~-~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         65 YDYFRIHRD-NIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHcCc-chhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            577888876 488888877     9999999999999999999988      788889999999999  89999999999


Q ss_pred             hccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCC------CCCCcHHHH
Q psy12892         74 GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD------HQDRTPMHL  147 (315)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~------~~~~~~l~~  147 (315)
                      ++|++++..                        .+.||+|.|+..++.+++++|+++|++.....      ..+.+++|.
T Consensus       139 ~~GADIn~~------------------------~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~  194 (437)
T PHA02795        139 DHGAVIYKI------------------------ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFL  194 (437)
T ss_pred             HCCCCCCCC------------------------CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHH
Confidence            999999873                        35689999999999999999999997543222      346789999


Q ss_pred             HHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCC-------
Q psy12892        148 AAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSR-------  214 (315)
Q Consensus       148 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~-------  214 (315)
                      |...++.+++++|+++ |++++..+..|.||||+|+..|+.+++++|++.|      +..|.||||.|+..|+       
T Consensus       195 a~~~~~~eIve~LIs~-GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~  273 (437)
T PHA02795        195 VDEPTVLEIYKLCIPY-IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRET  273 (437)
T ss_pred             HHhcCHHHHHHHHHhC-cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCccccccc
Confidence            9999999999999996 9999999999999999999999999999999988      6789999999999884       


Q ss_pred             -HHHHHHHHhccCCccccC
Q psy12892        215 -EDVVKLLLNKKGINVAAL  232 (315)
Q Consensus       215 -~~~~~~Ll~~~~~~~~~~  232 (315)
                       .+++++|++ .|++++..
T Consensus       274 ~~eIvelLL~-~gadI~~~  291 (437)
T PHA02795        274 HLKILEILLR-EPLSIDCI  291 (437)
T ss_pred             HHHHHHHHHh-CCCCCCch
Confidence             699999998 99988874

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.8e-29  Score=194.47  Aligned_cols=175  Identities=17%  Similarity=0.226  Sum_probs=154.5

Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcC--CHHHHHHHHhccCCCccccccchhhHH
Q psy12892         14 KATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEG--DEALVKYFYGAKANASITDHQGIQRDI   91 (315)
Q Consensus        14 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~~~   91 (315)
                      +.....+.||||+|+..|+.++|+.|++.   ++..+..|.||||+|+..+  +.+++++|+++|++++..+..      
T Consensus        15 ~~~~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~------   85 (209)
T PHA02859         15 DYLFYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRD------   85 (209)
T ss_pred             HHHhhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCC------
Confidence            34456789999999999999999999975   4567889999999999855  899999999999999987642      


Q ss_pred             HhhhhhhHHhhhhccCCChHHHHHHhc---CCHHHHHHHHhCCCCcccCCCCCCcHHHHHHH--cCCHHHHHHHHHhcCc
Q psy12892         92 AAAGTSVLANCLLMGEGQTALHIASAE---GDEALVKYFYGAKANASITDHQDRTPMHLAAE--NGHASIIELLADKFRA  166 (315)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~Ll~~~~~  166 (315)
                                     .|.||||+|+..   ++.+++++|++.|++++..+..|.||||+|+.  .++.+++++|++. |+
T Consensus        86 ---------------~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~-ga  149 (209)
T PHA02859         86 ---------------NNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS-GV  149 (209)
T ss_pred             ---------------CCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc-CC
Confidence                           689999998764   47999999999999999999999999999986  4689999999996 99


Q ss_pred             cccccccCCccHHHH-HHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcC
Q psy12892        167 SIFERTKENYNVLHL-AAMYSREDVVKLLLNKK------GIENYNVLHLAAMYS  213 (315)
Q Consensus       167 ~~~~~~~~~~~~l~~-a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~  213 (315)
                      +++..+..|.||||. ++..++.+++++|++.|      +..|.|||++|...+
T Consensus       150 din~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        150 SFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            999999999999995 56788999999999887      678999999998654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=4.9e-30  Score=211.94  Aligned_cols=206  Identities=14%  Similarity=0.031  Sum_probs=175.9

Q ss_pred             HHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHH
Q psy12892         36 VRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIA  115 (315)
Q Consensus        36 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A  115 (315)
                      .++++++|++++.++.+|     +|+..+..+++++|+++|++++..+.--                .....++|+||++
T Consensus        65 ~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~----------------~~~~~~~~~L~~~  123 (437)
T PHA02795         65 YDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIII----------------KNCNSVQDLLLYY  123 (437)
T ss_pred             HHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhh----------------hccccccHHHHHH
Confidence            468889999999887777     8999999999999999999988322100                0011688999999


Q ss_pred             Hh--cCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccc-cc-----ccCCccHHHHHHHcCc
Q psy12892        116 SA--EGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF-ER-----TKENYNVLHLAAMYSR  187 (315)
Q Consensus       116 ~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~-----~~~~~~~l~~a~~~~~  187 (315)
                      +.  .|+.+++++|+++|++++..  .+.||+|.|+..++.+++++|+++ |++.. ..     +..+.+++|.|...++
T Consensus       124 ~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~-Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~  200 (437)
T PHA02795        124 LSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNC-GIPDENDVKLDLYKIIQYTRGFLVDEPTV  200 (437)
T ss_pred             HHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhc-CCcccccccchhhhhhccchhHHHHhcCH
Confidence            99  88999999999999999874  458999999999999999999997 76432 22     1236789999999999


Q ss_pred             HHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhc
Q psy12892        188 EDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQ  261 (315)
Q Consensus       188 ~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (315)
                      .+++++|++.|      +..|.||||+|+..|+.+++++|++ .|++++.+                         +..|
T Consensus       201 ~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~-~GAdIN~~-------------------------d~~G  254 (437)
T PHA02795        201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLE-NGANVNAV-------------------------MSNG  254 (437)
T ss_pred             HHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------------------CCCC
Confidence            99999999988      6679999999999999999999999 99999985                         7789


Q ss_pred             CCcceeeeccCCCC--------cHHHHHHHHhhccceeeec
Q psy12892        262 QTAVHLVCSRQTGT--------ATSILRALLSTAGREIRMT  294 (315)
Q Consensus       262 ~t~L~~A~~~~~~~--------~~~~i~~Ll~~g~~~~~~~  294 (315)
                      .||||+|+..   |        +.+++++|+++|++++...
T Consensus       255 ~TpLh~Aa~~---g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        255 YTCLDVAVDR---GSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             CCHHHHHHHc---CCcccccccHHHHHHHHHhCCCCCCchh
Confidence            9999999998   6        4799999999999998544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=195.76  Aligned_cols=169  Identities=17%  Similarity=0.179  Sum_probs=150.3

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHhcCccccccc-cCCccHHHHHH
Q psy12892        107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENG--HASIIELLADKFRASIFERT-KENYNVLHLAA  183 (315)
Q Consensus       107 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~-~~~~~~l~~a~  183 (315)
                      .+.+||+.|+..++.+.|+.|++.   ++..+..|.||||+|+..+  +.+++++|+++ |++++..+ ..|.||||+|+
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIEN-GADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCCCCccCCCCCCCHHHHHH
Confidence            678999999999999999999975   4567889999999999854  89999999997 99999987 47999999987


Q ss_pred             Hc---CcHHHHHHHHhcC------CCCCCcHHHHHHH--cCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhh
Q psy12892        184 MY---SREDVVKLLLNKK------GIENYNVLHLAAM--YSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYL  252 (315)
Q Consensus       184 ~~---~~~~~~~~Ll~~~------~~~~~~~l~~A~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (315)
                      ..   ++.+++++|+++|      +..|.||||.|+.  .++.+++++|++ .|++++.+                    
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~-~gadin~~--------------------  154 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLID-SGVSFLNK--------------------  154 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCcccc--------------------
Confidence            64   4799999999887      6789999999886  468999999999 99999984                    


Q ss_pred             HHHHHhhhcCCccee-eeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCc
Q psy12892        253 YQVYLISKQQTAVHL-VCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDS  308 (315)
Q Consensus       253 ~~~~~~~~~~t~L~~-A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  308 (315)
                           +..|.||||. |+..   ++.+++++|+++|++++.+|..|.|||++|..++
T Consensus       155 -----d~~g~t~Lh~~a~~~---~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        155 -----DFDNNNILYSYILFH---SDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             -----cCCCCcHHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence                 7889999996 4566   8999999999999999999999999999998764

>KOG0507|consensus

Probab=99.96  E-value=1.3e-29  Score=214.14  Aligned_cols=232  Identities=28%  Similarity=0.357  Sum_probs=208.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcC-------------CcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchh
Q psy12892         22 TALHLAARKRDLDMVRILVDYG-------------TSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQ   88 (315)
Q Consensus        22 t~L~~A~~~~~~~~v~~Ll~~g-------------~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~   88 (315)
                      +-|..|++.|+++.+..|++..             ..++..|.+|+|+||.|+.+|+..++++|+++.+-.+.++.    
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~----   80 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDT----   80 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhc----
Confidence            4477899999999999999762             23567788999999999999999999999999988888775    


Q ss_pred             hHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccc
Q psy12892         89 RDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASI  168 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~  168 (315)
                                        .|.+|||+|++.|+.++++.++..+..++.....|.+|||.|++.|+.+++.+|+++ +++.
T Consensus        81 ------------------kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~-~adp  141 (854)
T KOG0507|consen   81 ------------------KGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKK-NADP  141 (854)
T ss_pred             ------------------cCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhc-CCCc
Confidence                              788999999999999999999999988899999999999999999999999999996 9999


Q ss_pred             cccccCCccHHHHHHHcCcHHHHHHHHhcC--------------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCC
Q psy12892        169 FERTKENYNVLHLAAMYSREDVVKLLLNKK--------------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGG  234 (315)
Q Consensus       169 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~--------------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  234 (315)
                      ...+.++.|++.+|++.|+.++++.|+...              ...+.+|+|.|+++|+.++++.|++ .|.|+|..  
T Consensus       142 ~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~-ag~din~~--  218 (854)
T KOG0507|consen  142 FIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLE-AGFDINYT--  218 (854)
T ss_pred             cccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHh-cCCCcccc--
Confidence            999999999999999999999999998653              4456789999999999999999999 99999984  


Q ss_pred             CCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeec
Q psy12892        235 EDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGK  306 (315)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~  306 (315)
                                              ...-|+||.|+.+   |..+++.+|++.|.+..++|.+|+|+|++-..
T Consensus       219 ------------------------t~~gtalheaalc---gk~evvr~ll~~gin~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  219 ------------------------TEDGTALHEAALC---GKAEVVRFLLEIGINTHIKNQHGQTALDIIID  263 (854)
T ss_pred             ------------------------cccchhhhhHhhc---CcchhhhHHHhhccccccccccchHHHHHHHh
Confidence                                    3445899999999   99999999999999999999999999987543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.95  E-value=3.1e-27  Score=215.70  Aligned_cols=229  Identities=21%  Similarity=0.212  Sum_probs=178.1

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHc--CCcccccCCCCChHHH-HHHhcCCHHHHHHHHhccCCCccccccchhhHHHhh
Q psy12892         18 INGDTALHLAARKRDLDMVRILVDY--GTSVDIQNGEGQTALH-IASAEGDEALVKYFYGAKANASITDHQGIQRDIAAA   94 (315)
Q Consensus        18 ~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~-~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   94 (315)
                      ..+...++.||..|+.+.++.+++.  +.++|..|..|.|||| .|+..++.+++++|+++++    .+.          
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~----------   80 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGA----------   80 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCC----------
Confidence            4668899999999999999999999  8999999999999999 8999999999999999887    122          


Q ss_pred             hhhhHHhhhhccCCChHHHHHHhcC---CHHHHHHHHhCCCC------cc----cCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy12892         95 GTSVLANCLLMGEGQTALHIASAEG---DEALVKYFYGAKAN------AS----ITDHQDRTPMHLAAENGHASIIELLA  161 (315)
Q Consensus        95 ~~~~~~~~~~~~~~~~~l~~A~~~~---~~~~v~~Ll~~~~~------~~----~~~~~~~~~l~~a~~~~~~~~~~~Ll  161 (315)
                                  .|.||||.|+..+   ...++..+...+.+      .+    .....|.||||+|+..|+.++++.|+
T Consensus        81 ------------~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL  148 (743)
T TIGR00870        81 ------------VGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLL  148 (743)
T ss_pred             ------------cChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHH
Confidence                        6899999998732   22344444443322      11    12346899999999999999999999


Q ss_pred             HhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCC
Q psy12892        162 DKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRP  241 (315)
Q Consensus       162 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  241 (315)
                      ++ |++++..+.... ..     ...       .......|.+|||.|+..++.+++++|++ .|+|++.          
T Consensus       149 ~~-GAdv~~~~~~~~-~~-----~~~-------~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadin~----------  203 (743)
T TIGR00870       149 ER-GASVPARACGDF-FV-----KSQ-------GVDSFYHGESPLNAAACLGSPSIVALLSE-DPADILT----------  203 (743)
T ss_pred             hC-CCCCCcCcCCch-hh-----cCC-------CCCcccccccHHHHHHHhCCHHHHHHHhc-CCcchhh----------
Confidence            96 999885443211 00     000       00012358899999999999999999999 9999988          


Q ss_pred             ccccchhhhhhHHHHHhhhcCCcceeeeccCCCC---------cHHHHHHHHhhccce-------eeeccCCceeEEEee
Q psy12892        242 DLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGT---------ATSILRALLSTAGRE-------IRMTVDGTLILYYRG  305 (315)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~---------~~~~i~~Ll~~g~~~-------~~~~~~g~t~l~~A~  305 (315)
                                     ++..|+||||+|+..   +         ...+.+++++.++..       ++.|.+|.|||++|+
T Consensus       204 ---------------~d~~g~T~Lh~A~~~---~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~  265 (743)
T TIGR00870       204 ---------------ADSLGNTLLHLLVME---NEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAA  265 (743)
T ss_pred             ---------------HhhhhhHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhh
Confidence                           588899999999988   5         234566777666554       678999999999999


Q ss_pred             cCchhhhhcC
Q psy12892        306 KDSKAQIEEL  315 (315)
Q Consensus       306 ~~~~~~~~~l  315 (315)
                      +.|+.+++++
T Consensus       266 ~~g~~~l~~l  275 (743)
T TIGR00870       266 KEGRIVLFRL  275 (743)
T ss_pred             hcCCccHHHH
Confidence            9999998763

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=1.4e-26  Score=212.57  Aligned_cols=172  Identities=20%  Similarity=0.246  Sum_probs=159.7

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcC
Q psy12892        107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS  186 (315)
Q Consensus       107 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~  186 (315)
                      .+.++|+.|+..|+.++++.|++.|++++..|..|+||||+|+..|+.+++++|+++ |++++..|.+|.||||+|+..|
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadin~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKH-ACNVHIRDANGNTALWNAISAK  602 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHHhC
Confidence            456899999999999999999999999999999999999999999999999999996 9999999999999999999999


Q ss_pred             cHHHHHHHHhcC----CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcC
Q psy12892        187 REDVVKLLLNKK----GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQ  262 (315)
Q Consensus       187 ~~~~~~~Ll~~~----~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (315)
                      +.+++++|++.+    ...+.++||.|+..|+.+++++|++ .|++++..                         +..|+
T Consensus       603 ~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~-~Gadin~~-------------------------d~~G~  656 (823)
T PLN03192        603 HHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLK-QGLNVDSE-------------------------DHQGA  656 (823)
T ss_pred             CHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHH-CCCCCCCC-------------------------CCCCC
Confidence            999999999876    3456789999999999999999999 99999984                         78899


Q ss_pred             CcceeeeccCCCCcHHHHHHHHhhccceeeeccCC-ceeEEEeecCc
Q psy12892        263 TAVHLVCSRQTGTATSILRALLSTAGREIRMTVDG-TLILYYRGKDS  308 (315)
Q Consensus       263 t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g-~t~l~~A~~~~  308 (315)
                      ||||+|+..   |+.+++++|+++|+|++..|..| .||+.++....
T Consensus       657 TpLh~A~~~---g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        657 TALQVAMAE---DHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CHHHHHHHC---CcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHH
Confidence            999999999   99999999999999999999988 88887765433

>KOG0502|consensus

Probab=99.94  E-value=1.7e-27  Score=172.91  Aligned_cols=231  Identities=19%  Similarity=0.187  Sum_probs=141.9

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHcCCc-ccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhh
Q psy12892         17 TINGDTALHLAARKRDLDMVRILVDYGTS-VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAG   95 (315)
Q Consensus        17 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~   95 (315)
                      +..|.+.+-.+.+.++.+++.....-..+ +...+.+|+.+++.|+-.++...+..++..+...+..+-           
T Consensus        59 ~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~-----------  127 (296)
T KOG0502|consen   59 NALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSL-----------  127 (296)
T ss_pred             HhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCcccc-----------
Confidence            34455555556666666555555443332 223445566677766666666666666666666655554           


Q ss_pred             hhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCC
Q psy12892         96 TSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN  175 (315)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  175 (315)
                                 .+.+|+.+++...+.+.+..+.+  ..+|..|..|.|||.||+..|+++++++|++. |++++......
T Consensus       128 -----------~p~s~~slsVhql~L~~~~~~~~--n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp~~lgk~r  193 (296)
T KOG0502|consen  128 -----------MPWSPLSLSVHQLHLDVVDLLVN--NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNS-GADPDALGKYR  193 (296)
T ss_pred             -----------ccCChhhHHHHHHHHHHHHHHhh--ccccCccccCchHhHHHHhcCchHHHHHHHHc-CCChhhhhhhh
Confidence                       46666666666665555544443  33455666677777777777777777777763 66666666666


Q ss_pred             ccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhh
Q psy12892        176 YNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQ  249 (315)
Q Consensus       176 ~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (315)
                      .++|.+|++.|..++|++|+.++      +-+|-|||.+|++-++.++++.|++ .|++++.                  
T Consensus       194 esALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~------------------  254 (296)
T KOG0502|consen  194 ESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLN-SGADVTQ------------------  254 (296)
T ss_pred             hhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHh-cCCCccc------------------
Confidence            66666666666666666666655      4456666666666666666666666 6666665                  


Q ss_pred             hhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEE
Q psy12892        250 AYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILY  302 (315)
Q Consensus       250 ~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~  302 (315)
                             .+..|++++..|+..   |+. +|+..+++.++.+.+|+.-.+|+|
T Consensus       255 -------e~dsGy~~mdlAVal---Gyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  255 -------EDDSGYWIMDLAVAL---GYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             -------ccccCCcHHHHHHHh---hhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence                   355666666666666   555 666666666666666655555543

>KOG0502|consensus

Probab=99.94  E-value=7.8e-27  Score=169.47  Aligned_cols=194  Identities=20%  Similarity=0.213  Sum_probs=176.7

Q ss_pred             hhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhH
Q psy12892         11 EQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRD   90 (315)
Q Consensus        11 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~   90 (315)
                      +.+..++.+|.++++.|+-.++...+...+.+|...|..+-.+++|+.+++...+.+.+..+.+..  +|.+++      
T Consensus        87 ~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~--VN~~De------  158 (296)
T KOG0502|consen   87 DAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK--VNACDE------  158 (296)
T ss_pred             CCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhcc--ccCccc------
Confidence            346778889999999999999999999999999999999999999999999999998888876554  445565      


Q ss_pred             HHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccc
Q psy12892         91 IAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFE  170 (315)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~  170 (315)
                                      .|+|||++|+..|++.+|++|++.|++++...+...++|.+|+..|..++++.|+++ +.+++.
T Consensus       159 ----------------~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r-~vdVNv  221 (296)
T KOG0502|consen  159 ----------------FGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTR-EVDVNV  221 (296)
T ss_pred             ----------------cCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhc-CCCcce
Confidence                            799999999999999999999999999999999999999999999999999999997 999999


Q ss_pred             cccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCcccc
Q psy12892        171 RTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAA  231 (315)
Q Consensus       171 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~  231 (315)
                      .|++|-|||.+|++.++.++++.|++.|      +..|++++..|+..|+. +++..++ ..+....
T Consensus       222 yDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie-~h~lkl~  286 (296)
T KOG0502|consen  222 YDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIE-KHALKLC  286 (296)
T ss_pred             eccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHH-HHHHHHh
Confidence            9999999999999999999999999998      67899999999999998 8888887 5455444

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=3.7e-25  Score=203.15  Aligned_cols=172  Identities=20%  Similarity=0.275  Sum_probs=155.1

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhh
Q psy12892         16 TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAG   95 (315)
Q Consensus        16 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~   95 (315)
                      .+..+.++|+.||..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+.           
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~-----------  589 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDA-----------  589 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCC-----------
Confidence            345678999999999999999999999999999999999999999999999999999999999998876           


Q ss_pred             hhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCC
Q psy12892         96 TSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN  175 (315)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  175 (315)
                                 .|.||||.|+..|+.+++++|++.+...+  ...+.++||.|+..|+.+++++|+++ |++++..|..|
T Consensus       590 -----------~G~TpL~~A~~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~-Gadin~~d~~G  655 (823)
T PLN03192        590 -----------NGNTALWNAISAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSEDHQG  655 (823)
T ss_pred             -----------CCCCHHHHHHHhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCC
Confidence                       79999999999999999999998776554  34567999999999999999999996 99999999999


Q ss_pred             ccHHHHHHHcCcHHHHHHHHhcC------CCCC-CcHHHHHHHc
Q psy12892        176 YNVLHLAAMYSREDVVKLLLNKK------GIEN-YNVLHLAAMY  212 (315)
Q Consensus       176 ~~~l~~a~~~~~~~~~~~Ll~~~------~~~~-~~~l~~A~~~  212 (315)
                      .||||+|+..|+.+++++|+++|      +..| .+|+..+...
T Consensus       656 ~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        656 ATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             CCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHH
Confidence            99999999999999999999987      3344 7887766443

>KOG0514|consensus

Probab=99.93  E-value=9.9e-26  Score=175.55  Aligned_cols=163  Identities=29%  Similarity=0.428  Sum_probs=148.7

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHcC-CcccccCCCCChHHHHHHhc-----CCHHHHHHHHhccCCCccccccc
Q psy12892         13 LKATTINGDTALHLAARKRDLDMVRILVDYG-TSVDIQNGEGQTALHIASAE-----GDEALVKYFYGAKANASITDHQG   86 (315)
Q Consensus        13 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~-----~~~~~v~~Ll~~~~~~~~~~~~~   86 (315)
                      +|.-|.+|.|+||||+..+++++|+.|++.| ++++..+.-|+||+++|+..     .+.++|..|..-| ++|.+-.+ 
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ-  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQ-  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh-
Confidence            7888999999999999999999999999998 57999999999999998864     4678888888655 56655544 


Q ss_pred             hhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q psy12892         87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA  166 (315)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~  166 (315)
                                          .|+|+|++|+.+|+.++|+.|+..|+++|.+|.+|-|+|+.|+++||.++++.||....+
T Consensus       339 --------------------~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~c  398 (452)
T KOG0514|consen  339 --------------------HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSC  398 (452)
T ss_pred             --------------------hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcc
Confidence                                799999999999999999999999999999999999999999999999999999999899


Q ss_pred             cccccccCCccHHHHHHHcCcHHHHHHHHhc
Q psy12892        167 SIFERTKENYNVLHLAAMYSREDVVKLLLNK  197 (315)
Q Consensus       167 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  197 (315)
                      ++...|.+|.|+|.+|...|+.++.-+|..+
T Consensus       399 d~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  399 DISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             cceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            9999999999999999999999998887654

>KOG0507|consensus

Probab=99.93  E-value=6.4e-26  Score=191.94  Aligned_cols=201  Identities=26%  Similarity=0.388  Sum_probs=179.9

Q ss_pred             hchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccch
Q psy12892          8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGI   87 (315)
Q Consensus         8 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~   87 (315)
                      .++...|..|++|.|+||.||.+|+.++++.|+++.+-++..|..|.+|||+|+..|+.++++.++.++..++..+.   
T Consensus        37 trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~---  113 (854)
T KOG0507|consen   37 TRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNI---  113 (854)
T ss_pred             CCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccc---
Confidence            34456899999999999999999999999999999999999999999999999999999999999999977776665   


Q ss_pred             hhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcc
Q psy12892         88 QRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS  167 (315)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~  167 (315)
                                         .|.+|||.|+++|+.+++.+|+++++++-..+.++.|++..|++.|..++++.|++. ..+
T Consensus       114 -------------------e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~  173 (854)
T KOG0507|consen  114 -------------------ENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK-KFP  173 (854)
T ss_pred             -------------------cCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh-ccc
Confidence                               799999999999999999999999999999999999999999999999999999986 333


Q ss_pred             cc--------ccccCCccHHHHHHHcCcHHHHHHHHhcC-----CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccC
Q psy12892        168 IF--------ERTKENYNVLHLAAMYSREDVVKLLLNKK-----GIENYNVLHLAAMYSREDVVKLLLNKKGINVAAL  232 (315)
Q Consensus       168 ~~--------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-----~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  232 (315)
                      ..        .....+.+|+|+|+++|+.++++.|++.|     ....-|+||.|+..|..+++.+|++ .|++...+
T Consensus       174 ~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~-~gin~h~~  250 (854)
T KOG0507|consen  174 VQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLE-IGINTHIK  250 (854)
T ss_pred             hhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHh-hccccccc
Confidence            21        22334568999999999999999999988     2234489999999999999999999 99998885

>KOG0505|consensus

Probab=99.93  E-value=2.9e-25  Score=181.44  Aligned_cols=225  Identities=25%  Similarity=0.269  Sum_probs=189.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhh
Q psy12892         23 ALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANC  102 (315)
Q Consensus        23 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (315)
                      .+..||..|+.+-+..|+..|++++..+.+|.|+||-||...+.+||++|+++|++++..+.                  
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~------------------  104 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDN------------------  104 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccccc------------------
Confidence            46678899999999999999999999999999999999999999999999999999999988                  


Q ss_pred             hhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHH
Q psy12892        103 LLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA  182 (315)
Q Consensus       103 ~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a  182 (315)
                          .++||+|.|+..|+..++.+|+.+|+++...+..|..|...|..-...++...-....+.+++..-...       
T Consensus       105 ----e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~-------  173 (527)
T KOG0505|consen  105 ----EGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAE-------  173 (527)
T ss_pred             ----ccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhh-------
Confidence                799999999999999999999999999999999999998888766666666666655455432211110       


Q ss_pred             HHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHH
Q psy12892        183 AMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVY  256 (315)
Q Consensus       183 ~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (315)
                       ..-...-++..++.|      ...|-|.||.|+..|..+++++|++ .|.+++.+                        
T Consensus       174 -e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~------------------------  227 (527)
T KOG0505|consen  174 -EQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQ-AGYSVNIK------------------------  227 (527)
T ss_pred             -HHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHH-hccCcccc------------------------
Confidence             001111222333344      3448999999999999999999999 99999994                        


Q ss_pred             HhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeec
Q psy12892        257 LISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGK  306 (315)
Q Consensus       257 ~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~  306 (315)
                       |..|+||||.|+.-   +..+++++|+++|++.+..+..|.||++.|..
T Consensus       228 -D~dgWtPlHAAA~W---g~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  228 -DYDGWTPLHAAAHW---GQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             -cccCCCcccHHHHh---hhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence             78899999999999   99999999999999999999999999999875

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=3.9e-24  Score=158.81  Aligned_cols=144  Identities=14%  Similarity=0.185  Sum_probs=129.0

Q ss_pred             hhccccccCCCcHHHHHHHcCCH----HHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHH---HHHHHhccCCCcccc
Q psy12892         11 EQLKATTINGDTALHLAARKRDL----DMVRILVDYGTSVDIQNGEGQTALHIASAEGDEAL---VKYFYGAKANASITD   83 (315)
Q Consensus        11 ~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~---v~~Ll~~~~~~~~~~   83 (315)
                      .+.+..+.++.++||.||+.|++    +++++|++.|++++..|..|+||||+|+..|+.+.   +++|+++|++++..+
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d   90 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARE   90 (166)
T ss_pred             hHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCC
Confidence            35677888999999999999998    66778889999999999999999999999988654   899999999999876


Q ss_pred             ccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHh-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy12892         84 HQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG-AKANASITDHQDRTPMHLAAENGHASIIELLAD  162 (315)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  162 (315)
                      ..                     .|.||||+|+..++.+++++|++ .|++++..+..|.||||+|+..++.+++++|++
T Consensus        91 ~~---------------------~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~  149 (166)
T PHA02743         91 LG---------------------TGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRA  149 (166)
T ss_pred             CC---------------------CCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            32                     68999999999999999999995 799999999999999999999999999999999


Q ss_pred             hcCccccccccCCc
Q psy12892        163 KFRASIFERTKENY  176 (315)
Q Consensus       163 ~~~~~~~~~~~~~~  176 (315)
                      . +++++.++..|.
T Consensus       150 ~-ga~~~~~~~~~~  162 (166)
T PHA02743        150 N-GAVCDDPLSIGL  162 (166)
T ss_pred             c-CCCCCCcccCCc
Confidence            6 999988877654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=3.9e-24  Score=195.47  Aligned_cols=197  Identities=23%  Similarity=0.269  Sum_probs=152.1

Q ss_pred             hhhccccccCCCcHHH-HHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcC---CHHHHHHHHhccCCCcccccc
Q psy12892         10 AEQLKATTINGDTALH-LAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEG---DEALVKYFYGAKANASITDHQ   85 (315)
Q Consensus        10 ~~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~   85 (315)
                      ..++|..|..|+|||| .|+..++.++++.|++.|+    .+..|.||||.|+..+   ...++.++...+.+....   
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~---  114 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPL---  114 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCch---
Confidence            4578999999999999 8889999999999999997    5778999999998722   223334443333221100   


Q ss_pred             chhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCC--------------CCCCcHHHHHHHc
Q psy12892         86 GIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD--------------HQDRTPMHLAAEN  151 (315)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--------------~~~~~~l~~a~~~  151 (315)
                         .....      ........|.||||+|+..|+.++++.|++.|++++...              ..|.+||+.|+..
T Consensus       115 ---~~~~~------~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~  185 (743)
T TIGR00870       115 ---ELAND------QYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACL  185 (743)
T ss_pred             ---hhhcc------ccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHh
Confidence               00000      000001268999999999999999999999999998642              3588999999999


Q ss_pred             CCHHHHHHHHHhcCccccccccCCccHHHHHHHcC---------cHHHHHHHHhcC-------------CCCCCcHHHHH
Q psy12892        152 GHASIIELLADKFRASIFERTKENYNVLHLAAMYS---------REDVVKLLLNKK-------------GIENYNVLHLA  209 (315)
Q Consensus       152 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~---------~~~~~~~Ll~~~-------------~~~~~~~l~~A  209 (315)
                      |+.+++++|+++ |++++..|..|+||+|+|+..+         ...+.+++++.+             +..|.||||.|
T Consensus       186 ~~~~iv~lLl~~-gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A  264 (743)
T TIGR00870       186 GSPSIVALLSED-PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLA  264 (743)
T ss_pred             CCHHHHHHHhcC-CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhh
Confidence            999999999996 9999999999999999999986         223444444322             56899999999


Q ss_pred             HHcCCHHHHHHHHh
Q psy12892        210 AMYSREDVVKLLLN  223 (315)
Q Consensus       210 ~~~~~~~~~~~Ll~  223 (315)
                      +..|+.+++++|++
T Consensus       265 ~~~g~~~l~~lLL~  278 (743)
T TIGR00870       265 AKEGRIVLFRLKLA  278 (743)
T ss_pred             hhcCCccHHHHHHH
Confidence            99999999999998

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02741 hypothetical protein; Provisional

Probab=99.92  E-value=1.2e-23  Score=157.11  Aligned_cols=137  Identities=20%  Similarity=0.390  Sum_probs=122.3

Q ss_pred             chhhccccccCCCcHHHHHHHcCCHHHHHHHHH------cCCcccccCCCCChHHHHHHhcCC----HHHHHHHHhccCC
Q psy12892          9 TAEQLKATTINGDTALHLAARKRDLDMVRILVD------YGTSVDIQNGEGQTALHIASAEGD----EALVKYFYGAKAN   78 (315)
Q Consensus         9 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~~~~   78 (315)
                      ....++.+|..|.||||+|++.|+.++++.|+.      .|++++..|..|.||||+|+..|+    .+++++|+++|++
T Consensus        10 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad   89 (169)
T PHA02741         10 LEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD   89 (169)
T ss_pred             HHHHhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC
Confidence            345688899999999999999999999999853      368899999999999999999998    5899999999999


Q ss_pred             CccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHh-CCCCcccCCCCCCcHHHHHHHcCCHHHH
Q psy12892         79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG-AKANASITDHQDRTPMHLAAENGHASII  157 (315)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~  157 (315)
                      ++..+..                     .|.||||+|+..++.+++++|++ .+++++..+..|.|||++|+..++.+++
T Consensus        90 in~~~~~---------------------~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv  148 (169)
T PHA02741         90 INAQEML---------------------EGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMM  148 (169)
T ss_pred             CCCCCcC---------------------CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHH
Confidence            9877632                     68999999999999999999997 5999999999999999999999999999


Q ss_pred             HHHHHhcCcc
Q psy12892        158 ELLADKFRAS  167 (315)
Q Consensus       158 ~~Ll~~~~~~  167 (315)
                      ++|++. +..
T Consensus       149 ~~L~~~-~~~  157 (169)
T PHA02741        149 QILREI-VAT  157 (169)
T ss_pred             HHHHHH-HHH
Confidence            999985 443

>KOG4369|consensus

Probab=99.91  E-value=1.5e-25  Score=196.31  Aligned_cols=285  Identities=20%  Similarity=0.175  Sum_probs=235.8

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccc-cCCCCChHHHHHHhcCCHHHHHHHHhccCCCc
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDI-QNGEGQTALHIASAEGDEALVKYFYGAKANAS   80 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~   80 (315)
                      .++|...+. .+..+|..|.+||..|+..|+..+|+.|+.+.++++. .|..+.|+|-+||..|+.+++++|+..|++-.
T Consensus       773 vellv~rga-niehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~ganke  851 (2131)
T KOG4369|consen  773 VELLVVRGA-NIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKE  851 (2131)
T ss_pred             HHHHHHhcc-cccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhcccc
Confidence            345555444 4889999999999999999999999999999999985 47789999999999999999999999999977


Q ss_pred             cccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCC--CCCCcHHHHHHHcCCHHHHH
Q psy12892         81 ITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD--HQDRTPMHLAAENGHASIIE  158 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~  158 (315)
                      .++.                      ...|||-+|...|..++++.|+..|..++.+.  +.|-.||+.|..+|+.+..+
T Consensus       852 hrnv----------------------sDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~  909 (2131)
T KOG4369|consen  852 HRNV----------------------SDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATL  909 (2131)
T ss_pred             ccch----------------------hhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHH
Confidence            7766                      45699999999999999999999998888764  56789999999999999999


Q ss_pred             HHHHhcCccccccc-cCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCcccc
Q psy12892        159 LLADKFRASIFERT-KENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAA  231 (315)
Q Consensus       159 ~Ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~  231 (315)
                      .|++. |.++|..- .+.+|+|-+|+..|+.+++.+||.+.      .+.|-|||+.++..|..|+-+.|+. .|+|.+.
T Consensus       910 ~ll~~-gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~-~gad~na  987 (2131)
T KOG4369|consen  910 SLLQP-GSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIA-AGADTNA  987 (2131)
T ss_pred             HHhcc-cchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhh-ccccccc
Confidence            99996 88887654 45678999999999999999998654      6778999999999999999999999 9999886


Q ss_pred             CCCCC-C----CCCCccccchhhhhhHH-----HHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeE
Q psy12892        232 LGGED-L----TGRPDLTVGPVQAYLYQ-----VYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLIL  301 (315)
Q Consensus       232 ~~~~~-~----~~~~~~~~~~~~~~~~~-----~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l  301 (315)
                      --.-. +    +..-..+.+.+...+..     .-++..|.|+|-+|+.-   |.+..+.+|+++++|++..|+...+++
T Consensus       988 sPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~G---g~lss~~il~~~~ad~d~qdnr~~S~~ 1064 (2131)
T KOG4369|consen  988 SPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAG---GALSSCPILVSSVADADQQDNRTNSRT 1064 (2131)
T ss_pred             CCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccC---CccccchHHhhcccChhhhhccccccc
Confidence            31100 0    01111111112222222     14577899999999999   999999999999999999999999999


Q ss_pred             EEeecCchhhhhc
Q psy12892        302 YYRGKDSKAQIEE  314 (315)
Q Consensus       302 ~~A~~~~~~~~~~  314 (315)
                      .-|.+.|+.+||+
T Consensus      1065 maafRKgh~~iVk 1077 (2131)
T KOG4369|consen 1065 MAAFRKGHFAIVK 1077 (2131)
T ss_pred             HHHHHhchhheec
Confidence            9999999999986

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.6e-23  Score=164.98  Aligned_cols=156  Identities=13%  Similarity=0.101  Sum_probs=127.3

Q ss_pred             ccccccCCCcH-HHHHHHcCCHHHHHHHHHcCCcccccC----CCCChHHHHHHhcCCHHHHHHHHhccCCCccccccch
Q psy12892         13 LKATTINGDTA-LHLAARKRDLDMVRILVDYGTSVDIQN----GEGQTALHIASAEGDEALVKYFYGAKANASITDHQGI   87 (315)
Q Consensus        13 ~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~~~----~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~   87 (315)
                      +..+|..|.|+ ||.|++.|+.+++++|+++|++++..+    ..|.||||+|+..++.+++++|+++|++++..+..  
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~--  102 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEE--  102 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCC--
Confidence            56677777765 677777899999999999999999863    58999999999999999999999999999975432  


Q ss_pred             hhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcc
Q psy12892         88 QRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS  167 (315)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~  167 (315)
                                         .|.||||.|+..++.+++++|++.|++++..+..|.||+|+|++.++.+++..+.   +..
T Consensus       103 -------------------~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~---~~~  160 (300)
T PHA02884        103 -------------------AKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC---DNE  160 (300)
T ss_pred             -------------------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc---CCc
Confidence                               6889999999999999999999999999999999999999999988888765443   222


Q ss_pred             ccccccCCccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        168 IFERTKENYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       168 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                         .+..+.+|...+   +..++++.|+.+.
T Consensus       161 ---~~~~~~~~~~~~---~n~ei~~~Lish~  185 (300)
T PHA02884        161 ---ISNFYKHPKKIL---INFDILKILVSHF  185 (300)
T ss_pred             ---ccccccChhhhh---ccHHHHHHHHHHH
Confidence               344455666654   3567778777654

>KOG4369|consensus

Probab=99.91  E-value=1.9e-24  Score=189.52  Aligned_cols=274  Identities=24%  Similarity=0.251  Sum_probs=223.3

Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHh
Q psy12892         14 KATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAA   93 (315)
Q Consensus        14 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   93 (315)
                      ..+..+-.|+|-.||..|+.|.+..|+..|+++..+|..|++||.+|+-.||..+|+-|+.+.+++.....+        
T Consensus       751 ~~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdr--------  822 (2131)
T KOG4369|consen  751 PLTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDR--------  822 (2131)
T ss_pred             cccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhccc--------
Confidence            344557789999999999999999999999999999999999999999999999999999999988766554        


Q ss_pred             hhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccc-
Q psy12892         94 AGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERT-  172 (315)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-  172 (315)
                                   .+.|+|-+|+..|+.++|+.|+..|++-..++-...||+.+|...|..++++.|+.. |..++.+. 
T Consensus       823 -------------tkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~-GseInSrtg  888 (2131)
T KOG4369|consen  823 -------------TKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSS-GSEINSRTG  888 (2131)
T ss_pred             -------------ccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhc-ccccccccc
Confidence                         789999999999999999999999998887887889999999999999999999996 97777654 


Q ss_pred             -cCCccHHHHHHHcCcHHHHHHHHhcC-------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCcc-
Q psy12892        173 -KENYNVLHLAAMYSREDVVKLLLNKK-------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDL-  243 (315)
Q Consensus       173 -~~~~~~l~~a~~~~~~~~~~~Ll~~~-------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~-  243 (315)
                       .-|.+||.+|...|+....+.|++.+       ..+.+|+|.+|+..|+.+++..||. ..+++..+...++++-... 
T Consensus       889 SklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa-~~anvehRaktgltplme~A  967 (2131)
T KOG4369|consen  889 SKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLA-AQANVEHRAKTGLTPLMEMA  967 (2131)
T ss_pred             cccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHH-HhhhhhhhcccCCcccchhh
Confidence             56889999999999999999999887       4457799999999999999999999 8888888765554432221 


Q ss_pred             --ccchhhhhhHHH-------HHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhhh
Q psy12892        244 --TVGPVQAYLYQV-------YLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIE  313 (315)
Q Consensus       244 --~~~~~~~~~~~~-------~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  313 (315)
                        ++..+.+.++..       ..-....|+|.+++..   |+.+.++.|++..+.+..+|++|.|+|.+|.--|....+
T Consensus       968 sgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~k---Gh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~ 1043 (2131)
T KOG4369|consen  968 SGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANK---GHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSC 1043 (2131)
T ss_pred             cCCccccchhhhhcccccccCCCCCcCCccceeecCC---CchhhhHHhhCCccceecccCCCCcccchhccCCccccc
Confidence              122222223222       1122345667777777   777777777777777777777777777777776665544

>KOG0514|consensus

Probab=99.90  E-value=2e-24  Score=168.36  Aligned_cols=151  Identities=23%  Similarity=0.292  Sum_probs=138.9

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHc-----CcHHHHHHHHhcCCC------CC
Q psy12892        134 ASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMY-----SREDVVKLLLNKKGI------EN  202 (315)
Q Consensus       134 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~-----~~~~~~~~Ll~~~~~------~~  202 (315)
                      +|..|.+|+|+|||++.++++++|+.||+..-++++..+.-|+||+++++..     .+.++|..|+..|+.      -|
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~g  340 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHG  340 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhc
Confidence            4677999999999999999999999999987899999999999999998754     367889999988744      48


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHH
Q psy12892        203 YNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRA  282 (315)
Q Consensus       203 ~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~  282 (315)
                      .|+|++|+-+|+.++++.||. .|+|+|.                         +|..|.|+|++|+.+   |+.+++++
T Consensus       341 QTALMLAVSHGr~d~vk~LLa-cgAdVNi-------------------------QDdDGSTALMCA~EH---GhkEivkl  391 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLA-CGADVNI-------------------------QDDDGSTALMCAAEH---GHKEIVKL  391 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHH-ccCCCcc-------------------------ccCCccHHHhhhhhh---ChHHHHHH
Confidence            899999999999999999999 9999999                         478899999999999   99999999


Q ss_pred             HHhh-ccceeeeccCCceeEEEeecCchhhhh
Q psy12892        283 LLST-AGREIRMTVDGTLILYYRGKDSKAQIE  313 (315)
Q Consensus       283 Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~  313 (315)
                      ||.. ++|+...|.+|.|+|.+|-..|+.||.
T Consensus       392 LLA~p~cd~sLtD~DgSTAl~IAleagh~eIa  423 (452)
T KOG0514|consen  392 LLAVPSCDISLTDVDGSTALSIALEAGHREIA  423 (452)
T ss_pred             HhccCcccceeecCCCchhhhhHHhcCchHHH
Confidence            9986 789999999999999999999999984

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=5.4e-22  Score=147.35  Aligned_cols=136  Identities=13%  Similarity=0.168  Sum_probs=107.9

Q ss_pred             HcCCcccccCCCCChHHHHHHhcCCH----HHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHH
Q psy12892         41 DYGTSVDIQNGEGQTALHIASAEGDE----ALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIAS  116 (315)
Q Consensus        41 ~~g~~~~~~~~~g~t~l~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~  116 (315)
                      .+|++++..+..+.++||.||..|+.    +++++|++.++.++..+.                      .|.||||+|+
T Consensus         8 ~~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~----------------------~g~t~Lh~Aa   65 (166)
T PHA02743          8 GNNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDH----------------------HGRQCTHMVA   65 (166)
T ss_pred             ccchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC----------------------CCCcHHHHHH
Confidence            35777877888888999999999987    666677788887776665                      7889999999


Q ss_pred             hcCCHH---HHHHHHhCCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHH
Q psy12892        117 AEGDEA---LVKYFYGAKANASITD-HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK  192 (315)
Q Consensus       117 ~~~~~~---~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  192 (315)
                      ..++.+   ++++|++.|++++..+ ..|.||||+|+..|+.+++++|+++.+++++..+..|.||||+|+..++.++++
T Consensus        66 ~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~  145 (166)
T PHA02743         66 WYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMME  145 (166)
T ss_pred             HhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            988755   4789999999999887 479999999999999999999996458888877777777777776666655555


Q ss_pred             HHHhcC
Q psy12892        193 LLLNKK  198 (315)
Q Consensus       193 ~Ll~~~  198 (315)
                      +|++++
T Consensus       146 ~Ll~~g  151 (166)
T PHA02743        146 ILRANG  151 (166)
T ss_pred             HHHHcC
Confidence            555543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=2.9e-22  Score=147.64  Aligned_cols=133  Identities=23%  Similarity=0.275  Sum_probs=110.9

Q ss_pred             hccccccCCCcHHHHHHHcCCHHHHHHHHHcC-------CcccccCCCCChHHHHHHhcCCH---HHHHHHHhccCCCcc
Q psy12892         12 QLKATTINGDTALHLAARKRDLDMVRILVDYG-------TSVDIQNGEGQTALHIASAEGDE---ALVKYFYGAKANASI   81 (315)
Q Consensus        12 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-------~~~~~~~~~g~t~l~~A~~~~~~---~~v~~Ll~~~~~~~~   81 (315)
                      ..+.+|.+|.||||+||+.|++.  ..+...+       ..++..|..|.||||+|+..|+.   +++++|++.|++++.
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~   86 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADING   86 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccc
Confidence            46788899999999999999843  3332222       12445688999999999999986   468899999999988


Q ss_pred             ccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHh-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy12892         82 TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG-AKANASITDHQDRTPMHLAAENGHASIIELL  160 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  160 (315)
                      .+..                     .|.||||+|+..++.+++++|+. .+++++..+..|.||||+|+..|+.+++++|
T Consensus        87 ~~~~---------------------~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~L  145 (154)
T PHA02736         87 KERV---------------------FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNIL  145 (154)
T ss_pred             cCCC---------------------CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHH
Confidence            7632                     68999999999999999999997 5899999999999999999999999999999


Q ss_pred             HHhcCccc
Q psy12892        161 ADKFRASI  168 (315)
Q Consensus       161 l~~~~~~~  168 (315)
                      ++. |++.
T Consensus       146 l~~-ga~~  152 (154)
T PHA02736        146 RAK-GAQC  152 (154)
T ss_pred             HHc-CCCC
Confidence            985 7654

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=1.6e-21  Score=145.53  Aligned_cols=130  Identities=21%  Similarity=0.257  Sum_probs=115.3

Q ss_pred             cccCCCCChHHHHHHhcCCHHHHHHHHh------ccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCC
Q psy12892         47 DIQNGEGQTALHIASAEGDEALVKYFYG------AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD  120 (315)
Q Consensus        47 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~  120 (315)
                      +.++..|.||||+|+..|+.+++++|+.      .|++++..+.                      .|.||||+|+..++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~----------------------~g~T~Lh~A~~~g~   72 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDD----------------------AGQMCIHIAAEKHE   72 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCC----------------------CCCcHHHHHHHcCC
Confidence            4567889999999999999999999864      2466666655                      79999999999998


Q ss_pred             ----HHHHHHHHhCCCCcccCCC-CCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHH
Q psy12892        121 ----EALVKYFYGAKANASITDH-QDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL  195 (315)
Q Consensus       121 ----~~~v~~Ll~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  195 (315)
                          .+++++|++.|++++..+. .|.||||+|+..++.+++++|++..+++++..+..|.|||++|+..++.+++++|+
T Consensus        73 ~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~  152 (169)
T PHA02741         73 AQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILR  152 (169)
T ss_pred             hHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence                5899999999999999885 89999999999999999999997558999999999999999999999999999998


Q ss_pred             hcC
Q psy12892        196 NKK  198 (315)
Q Consensus       196 ~~~  198 (315)
                      +.+
T Consensus       153 ~~~  155 (169)
T PHA02741        153 EIV  155 (169)
T ss_pred             HHH
Confidence            754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=3.4e-21  Score=153.72  Aligned_cols=158  Identities=14%  Similarity=0.081  Sum_probs=133.5

Q ss_pred             cccCCCCCh-HHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHH
Q psy12892         47 DIQNGEGQT-ALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK  125 (315)
Q Consensus        47 ~~~~~~g~t-~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~  125 (315)
                      -.+|..+.| +||.|+..|+.+++++|+++|++++..+..                  .+..|.||||+|+..++.++++
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~------------------sd~~g~TpLh~Aa~~~~~eivk   87 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPL------------------SENSKTNPLIYAIDCDNDDAAK   87 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcc------------------cCCCCCCHHHHHHHcCCHHHHH
Confidence            346666665 567788889999999999999999876420                  0016899999999999999999


Q ss_pred             HHHhCCCCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC-CCCCC
Q psy12892        126 YFYGAKANASIT-DHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK-GIENY  203 (315)
Q Consensus       126 ~Ll~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~  203 (315)
                      +|+++|++++.. +..|.||||.|+..|+.+++++|++. |++++..+..|.||+++|+..++.+++..+.... +..+.
T Consensus        88 lLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~-GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~~~~~~~  166 (300)
T PHA02884         88 LLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSY-GADINIQTNDMVTPIELALMICNNFLAFMICDNEISNFYK  166 (300)
T ss_pred             HHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCccccccc
Confidence            999999999986 46799999999999999999999996 9999999999999999999988888876666544 45567


Q ss_pred             cHHHHHHHcCCHHHHHHHHhccCC
Q psy12892        204 NVLHLAAMYSREDVVKLLLNKKGI  227 (315)
Q Consensus       204 ~~l~~A~~~~~~~~~~~Ll~~~~~  227 (315)
                      +|++.+   ++.++++.|++ ++.
T Consensus       167 ~~~~~~---~n~ei~~~Lis-h~v  186 (300)
T PHA02884        167 HPKKIL---INFDILKILVS-HFI  186 (300)
T ss_pred             Chhhhh---ccHHHHHHHHH-HHH
Confidence            888865   47899999998 666

>KOG0505|consensus

Probab=99.87  E-value=1.4e-21  Score=160.03  Aligned_cols=203  Identities=25%  Similarity=0.342  Sum_probs=140.1

Q ss_pred             hccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHH
Q psy12892         12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDI   91 (315)
Q Consensus        12 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~   91 (315)
                      .++..+.+|.|+||.||...+.+||++|+++|++|+..|..++||||.|+..|+..++++|+.+|+++...+.       
T Consensus        65 ~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNs-------  137 (527)
T KOG0505|consen   65 SPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNS-------  137 (527)
T ss_pred             CccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccC-------
Confidence            4689999999999999999999999999999999999999999999999999999999999999999877665       


Q ss_pred             HhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHh-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccc
Q psy12892         92 AAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG-AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFE  170 (315)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~  170 (315)
                                     .|..|+-.+......+++..-.. .|.++.......        ..-..+-+...+. .|...+.
T Consensus       138 ---------------dg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~--------e~~ml~D~~q~l~-~G~~~d~  193 (527)
T KOG0505|consen  138 ---------------DGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAE--------EQTMLDDARQWLN-AGAELDA  193 (527)
T ss_pred             ---------------CCCCccccccCcchhHHHHHHHHHhcccHHHHhhhh--------HHHHHHHHHHHHh-ccccccc
Confidence                           45556555554444444443332 122211110000        0001111222233 3666666


Q ss_pred             cccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccc
Q psy12892        171 RTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLT  244 (315)
Q Consensus       171 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  244 (315)
                      ....|-|.+|.|+-.|..++.++|++.+      +.+|++|||.|+..+..++++.|++ +|++.+.             
T Consensus       194 ~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~-~ga~~d~-------------  259 (527)
T KOG0505|consen  194 RHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVE-HGADMDA-------------  259 (527)
T ss_pred             cccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHH-hhcccch-------------
Confidence            6655666666666666666666666655      5667777777777777777777776 7777776             


Q ss_pred             cchhhhhhHHHHHhhhcCCcceeeecc
Q psy12892        245 VGPVQAYLYQVYLISKQQTAVHLVCSR  271 (315)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~t~L~~A~~~  271 (315)
                                  ....|.||+.+|..-
T Consensus       260 ------------~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  260 ------------KTKMGETPLDVADEE  274 (527)
T ss_pred             ------------hhhcCCCCccchhhh
Confidence                        366677777776654

>KOG0512|consensus

Probab=99.86  E-value=7.2e-21  Score=133.43  Aligned_cols=142  Identities=25%  Similarity=0.224  Sum_probs=122.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCc-ccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHh
Q psy12892         23 ALHLAARKRDLDMVRILVDYGTS-VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLAN  101 (315)
Q Consensus        23 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
                      .+-+|+..+.+..|+.|++..++ +|.+|.+|+||||-|+++|+.+|++.|+..|+++.....                 
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~-----------------  128 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTN-----------------  128 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccc-----------------
Confidence            46788999999999999988766 889999999999999999999999999999999888776                 


Q ss_pred             hhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCC-HHHHHHHHHhcCccccccccCCccHHH
Q psy12892        102 CLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGH-ASIIELLADKFRASIFERTKENYNVLH  180 (315)
Q Consensus       102 ~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~~~~~l~  180 (315)
                           .|+||||.|+..++.+++..|+++|++++.......||||.|+...+ ...+.+|+...+..+...+..+.+|+.
T Consensus       129 -----~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~  203 (228)
T KOG0512|consen  129 -----EGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFD  203 (228)
T ss_pred             -----cCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHH
Confidence                 79999999999999999999999999999988888899999998655 457778877667777777888888888


Q ss_pred             HHHHcC
Q psy12892        181 LAAMYS  186 (315)
Q Consensus       181 ~a~~~~  186 (315)
                      +|-+.+
T Consensus       204 iARRT~  209 (228)
T KOG0512|consen  204 IARRTS  209 (228)
T ss_pred             HHHHhh
Confidence            886654

>KOG0512|consensus

Probab=99.86  E-value=6.2e-21  Score=133.74  Aligned_cols=130  Identities=19%  Similarity=0.255  Sum_probs=113.6

Q ss_pred             hHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccc
Q psy12892          3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASIT   82 (315)
Q Consensus         3 ~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~   82 (315)
                      +-|++..+.-+|.||.+|.||||.|+.+|++++|+.|+..|+++++++..|+||||.||.+++.+++.+|+++|++++..
T Consensus        80 ~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~  159 (228)
T KOG0512|consen   80 QRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQ  159 (228)
T ss_pred             HHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCccccc
Confidence            44566667779999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCH-HHHHHHH-hCCCCcccCCCCCCcHHHHHHHcCCH
Q psy12892         83 DHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDE-ALVKYFY-GAKANASITDHQDRTPMHLAAENGHA  154 (315)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~-~~v~~Ll-~~~~~~~~~~~~~~~~l~~a~~~~~~  154 (315)
                      ..                      ...||||+|+...+. ..+.+|+ ..+..+...+..+.||+.+|-+.+..
T Consensus       160 t~----------------------g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  160 TK----------------------GLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             cc----------------------ccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence            76                      567999999987764 4555554 55677777788899999999887643

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=2.2e-20  Score=137.58  Aligned_cols=136  Identities=15%  Similarity=0.112  Sum_probs=106.4

Q ss_pred             ccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCH---H
Q psy12892         46 VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDE---A  122 (315)
Q Consensus        46 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~---~  122 (315)
                      .+..|..|.||||+|+..|+.  +.++...+...+...               ......+..|.||||+|+..++.   +
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~---------------~~~~~~d~~g~t~Lh~a~~~~~~~~~e   72 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENR---------------YLVLEYNRHGKQCVHIVSNPDKADPQE   72 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhH---------------HHHHHhcCCCCEEEEeecccCchhHHH
Confidence            456788899999999999983  344433322111100               00001123799999999999976   4


Q ss_pred             HHHHHHhCCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        123 LVKYFYGAKANASITD-HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       123 ~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      ++++|++.|++++..+ ..|.||||+|+..|+.+++++|+.+.+++++..+..|.|||++|+..++.+++++|++.+
T Consensus        73 ~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         73 KLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             HHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            6889999999999988 489999999999999999999998558999999999999999999999999999888766

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.82  E-value=4.6e-19  Score=126.25  Aligned_cols=125  Identities=36%  Similarity=0.642  Sum_probs=112.2

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhh
Q psy12892         15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAA   94 (315)
Q Consensus        15 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   94 (315)
                      .+|.+|.||||.|+..|+.+++++|++.|.+.+..+..|.+|+|+|+..++.+++++|++.+++++..+.          
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~----------   71 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDK----------   71 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCC----------
Confidence            3567899999999999999999999999998888889999999999999999999999999987666554          


Q ss_pred             hhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy12892         95 GTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLA  161 (315)
Q Consensus        95 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  161 (315)
                                  .+.+|+|.|+..++.+++++|++.+.+.+..+..+.+|++.|...++.+++++|+
T Consensus        72 ------------~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          72 ------------DGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             ------------CCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                        6889999999999999999999999888888889999999999999999988874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.81  E-value=2.7e-19  Score=119.02  Aligned_cols=89  Identities=33%  Similarity=0.601  Sum_probs=77.8

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhh
Q psy12892         24 LHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCL  103 (315)
Q Consensus        24 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (315)
                      ||+||+.|+++++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++..+.                   
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~-------------------   57 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDK-------------------   57 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BST-------------------
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCC-------------------
Confidence            7899999999999999999988765    88999999999999999999999999988775                   


Q ss_pred             hccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCC
Q psy12892        104 LMGEGQTALHIASAEGDEALVKYFYGAKANASITD  138 (315)
Q Consensus       104 ~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~  138 (315)
                         .|.||||+|+.+++.+++++|+++|++++.+|
T Consensus        58 ---~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   58 ---NGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             ---TSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             ---CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence               78999999999999999999999999887654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195|consensus

Probab=99.81  E-value=5.5e-20  Score=139.68  Aligned_cols=141  Identities=25%  Similarity=0.342  Sum_probs=122.2

Q ss_pred             hhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcccccc
Q psy12892          6 STQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQ   85 (315)
Q Consensus         6 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   85 (315)
                      ++....|+|.-|.+|.+|||+||+.|+..++++|+..|+.+|..+.-..||||+|+..|+.++|+.|++..++++..+. 
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavne-   98 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNE-   98 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhc-
Confidence            4455568999999999999999999999999999999999999998889999999999999999999999999998887 


Q ss_pred             chhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q psy12892         86 GIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFR  165 (315)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  165 (315)
                                           .|.||||+|+..|.-.+.+-|+..|+.++..++.|.||+..|--. ..+.+.-+.++.|
T Consensus        99 ---------------------hgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~-l~~~l~e~aek~g  156 (448)
T KOG0195|consen   99 ---------------------HGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPM-LKNTLLEIAEKHG  156 (448)
T ss_pred             ---------------------cCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchH-HHHHHHHHHHHhC
Confidence                                 799999999999999999999999999999999999999886321 1233344444445


Q ss_pred             cccc
Q psy12892        166 ASIF  169 (315)
Q Consensus       166 ~~~~  169 (315)
                      ..++
T Consensus       157 q~~n  160 (448)
T KOG0195|consen  157 QSPN  160 (448)
T ss_pred             CCCC
Confidence            5543

>KOG3676|consensus

Probab=99.79  E-value=3e-18  Score=147.52  Aligned_cols=185  Identities=20%  Similarity=0.260  Sum_probs=147.1

Q ss_pred             hccccccCCCcHHHHHHHc---CCHHHHHHHHHcCCc-c----cccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcccc
Q psy12892         12 QLKATTINGDTALHLAARK---RDLDMVRILVDYGTS-V----DIQNGEGQTALHIASAEGDEALVKYFYGAKANASITD   83 (315)
Q Consensus        12 ~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~-~----~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~   83 (315)
                      +++.|..-|.|.||.|..+   +.-++++.|++.-.. +    ......|.||||.|+.+.+.++|++|++.||+++.+-
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa  214 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARA  214 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHh
Confidence            5888899999999999984   345889999876432 1    1234679999999999999999999999999987543


Q ss_pred             ccchhhHHHhhhhhhHHhh-hhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy12892         84 HQGIQRDIAAAGTSVLANC-LLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLAD  162 (315)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  162 (315)
                      .-.+-........+...++ -.-..|+.||-.|+..++.+++++|+++|+|++.+|..|+|.||.++..-..++...+++
T Consensus       215 ~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~  294 (782)
T KOG3676|consen  215 CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALE  294 (782)
T ss_pred             hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHh
Confidence            2111000000000000000 001268999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcc--ccccccCCccHHHHHHHcCcHHHHHHHHhc
Q psy12892        163 KFRAS--IFERTKENYNVLHLAAMYSREDVVKLLLNK  197 (315)
Q Consensus       163 ~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  197 (315)
                      . |+.  ....+..|-|||.+|++-|+.++.+.+++.
T Consensus       295 ~-ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  295 L-GANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             c-CCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            6 888  788899999999999999999999999988

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=2.4e-17  Score=117.31  Aligned_cols=124  Identities=35%  Similarity=0.581  Sum_probs=107.8

Q ss_pred             cCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHH
Q psy12892         49 QNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFY  128 (315)
Q Consensus        49 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll  128 (315)
                      .+..|.||||+|+..++.+++++|++.+++.+..+.                      .|.+|++.|+..++.+++++|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~----------------------~g~~~l~~a~~~~~~~~~~~ll   60 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN----------------------DGRTPLHLAAKNGHLEIVKLLL   60 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCC----------------------CCCcHHHHHHHcCCHHHHHHHH
Confidence            457789999999999999999999999988755554                      6889999999999999999999


Q ss_pred             hCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHH
Q psy12892        129 GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL  195 (315)
Q Consensus       129 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  195 (315)
                      +.+..++..+..+.+|+|.|+..++.+++++|+++ +.+.+..+..+.+|++.|...++.+++++|+
T Consensus        61 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          61 EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99988888888899999999999999999999986 7778888888889999998888888888764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195|consensus

Probab=99.76  E-value=9.6e-19  Score=132.97  Aligned_cols=123  Identities=27%  Similarity=0.350  Sum_probs=113.2

Q ss_pred             HHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHh
Q psy12892         38 ILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASA  117 (315)
Q Consensus        38 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~  117 (315)
                      ||-+..-|.|.-|..|++|||+|++.|+..+++.|+..|+.++..+.                      -..||||+|+.
T Consensus        19 wld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnm----------------------gddtplhlaaa   76 (448)
T KOG0195|consen   19 WLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNM----------------------GDDTPLHLAAA   76 (448)
T ss_pred             EecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccC----------------------CCCcchhhhhh
Confidence            44455667888999999999999999999999999999999998875                      45699999999


Q ss_pred             cCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHH
Q psy12892        118 EGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAA  183 (315)
Q Consensus       118 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~  183 (315)
                      +|+.++|+.|++..+++|..+..|.||||+||.-|...+.+-|+.. |+.++.-+..|.|||..|-
T Consensus        77 hghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~-ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   77 HGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISC-GAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             cccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhc-cceeeecccCCCCchhhhc
Confidence            9999999999999999999999999999999999999999999996 9999999999999998773

>KOG3676|consensus

Probab=99.75  E-value=1.6e-17  Score=143.14  Aligned_cols=186  Identities=23%  Similarity=0.284  Sum_probs=153.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcC---------CcccccCCCCChHHHHHHh---cCCHHHHHHHHhccCCCccccccchh
Q psy12892         21 DTALHLAARKRDLDMVRILVDYG---------TSVDIQNGEGQTALHIASA---EGDEALVKYFYGAKANASITDHQGIQ   88 (315)
Q Consensus        21 ~t~L~~A~~~~~~~~v~~Ll~~g---------~~~~~~~~~g~t~l~~A~~---~~~~~~v~~Ll~~~~~~~~~~~~~~~   88 (315)
                      +.++..|...+.++...-++..+         -+++.+-..|+|+||.|..   .++.++++.|++.-+.+-  +.. +.
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~li--nd~-~~  178 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLI--NDI-YT  178 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHh--hhh-hh
Confidence            36778888888888888777665         4566667789999999997   356789999987655211  000 00


Q ss_pred             hHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccC--------C---------------CCCCcHH
Q psy12892         89 RDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT--------D---------------HQDRTPM  145 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~--------~---------------~~~~~~l  145 (315)
                      .              ....|.||||+|+.+.+.++|+.|++.|+|++.+        +               ..|..||
T Consensus       179 ~--------------eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPL  244 (782)
T KOG3676|consen  179 S--------------EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPL  244 (782)
T ss_pred             h--------------HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCch
Confidence            0              0127999999999999999999999999998643        1               1367899


Q ss_pred             HHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC--------CCCCCcHHHHHHHcCCHHH
Q psy12892        146 HLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK--------GIENYNVLHLAAMYSREDV  217 (315)
Q Consensus       146 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~--------~~~~~~~l~~A~~~~~~~~  217 (315)
                      .+|+-.++.+++++|+++ |+|+++.|..|+|.||..+.+-..++..++++.+        +..|-|||.+|++-|..++
T Consensus       245 SfAAC~nq~eivrlLl~~-gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~em  323 (782)
T KOG3676|consen  245 SFAACTNQPEIVRLLLAH-GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEM  323 (782)
T ss_pred             HHHHHcCCHHHHHHHHhc-CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHH
Confidence            999999999999999996 9999999999999999999998889999999877        5578999999999999999


Q ss_pred             HHHHHhc
Q psy12892        218 VKLLLNK  224 (315)
Q Consensus       218 ~~~Ll~~  224 (315)
                      .+.+++.
T Consensus       324 f~~ile~  330 (782)
T KOG3676|consen  324 FQHILER  330 (782)
T ss_pred             HHHHHHh
Confidence            9999994

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.74  E-value=2.1e-17  Score=109.82  Aligned_cols=89  Identities=34%  Similarity=0.555  Sum_probs=71.6

Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCccc
Q psy12892         57 LHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI  136 (315)
Q Consensus        57 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~  136 (315)
                      ||+|+..|+.+++++|++.+.+++.                          |.||||+|+..|+.+++++|++.|++++.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~--------------------------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~   54 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL--------------------------GNTALHYAAENGNLEIVKLLLENGADINS   54 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS--------------------------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC--------------------------CCCHHHHHHHcCCHHHHHHHHHhcccccc
Confidence            6888888888888888887776653                          34788888888888888888888888888


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccc
Q psy12892        137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFERT  172 (315)
Q Consensus       137 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  172 (315)
                      .+..|.||||+|+..|+.+++++|+++ |++++.+|
T Consensus        55 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~n   89 (89)
T PF12796_consen   55 QDKNGNTALHYAAENGNLEIVKLLLEH-GADVNIRN   89 (89)
T ss_dssp             BSTTSSBHHHHHHHTTHHHHHHHHHHT-TT-TTSS-
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcC
Confidence            888888888888888888888888886 88776543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214|consensus

Probab=99.69  E-value=2.2e-16  Score=98.91  Aligned_cols=104  Identities=24%  Similarity=0.305  Sum_probs=87.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHH
Q psy12892         21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLA  100 (315)
Q Consensus        21 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
                      ..-+.|++++|.++-|+..+..|.+++.. ..|++|||+|+-.|..+++++|+..|++++.+++                
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDK----------------   65 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDK----------------   65 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccc----------------
Confidence            35678889999999999999888888865 4788999999999999999999999999988887                


Q ss_pred             hhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHH
Q psy12892        101 NCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHL  147 (315)
Q Consensus       101 ~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~  147 (315)
                            +|.|||..|+..|+.++|++|++.|++-......|.+.+..
T Consensus        66 ------ygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   66 ------YGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             ------cCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhh
Confidence                  78899999999999999999999998877777777655443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.64  E-value=8.4e-16  Score=91.21  Aligned_cols=54  Identities=37%  Similarity=0.735  Sum_probs=46.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHH
Q psy12892         20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY   73 (315)
Q Consensus        20 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll   73 (315)
                      |.||||+||+.|+.+++++|+++|.+++..|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999999999999999999999999999999986

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.64  E-value=5.3e-15  Score=116.86  Aligned_cols=129  Identities=33%  Similarity=0.528  Sum_probs=118.9

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCC-----HHHHHHHHhccC---CCccccc
Q psy12892         13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGD-----EALVKYFYGAKA---NASITDH   84 (315)
Q Consensus        13 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-----~~~v~~Ll~~~~---~~~~~~~   84 (315)
                      .+..+..+.++++.++..+..+++++++..|++++..+..|.||||+|+..++     .+++++|++.|+   ..+..+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            45566678999999999999999999999999999999999999999999999     999999999999   3444354


Q ss_pred             cchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q psy12892         85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK  163 (315)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  163 (315)
                                            .|.||||+|+..|+.++++.|++.+++++..+..|.|+++.|+..++.++++.+++.
T Consensus       146 ----------------------~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         146 ----------------------DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             ----------------------CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence                                  799999999999999999999999999999999999999999999999999999985

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.60  E-value=9.4e-16  Score=91.33  Aligned_cols=56  Identities=34%  Similarity=0.519  Sum_probs=34.4

Q ss_pred             hhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHH
Q psy12892          5 LSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA   60 (315)
Q Consensus         5 l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A   60 (315)
                      |+++++.+++.+|..|.||||+||..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            34555778999999999999999999999999999999999999999999999987

>KOG4214|consensus

Probab=99.59  E-value=1.3e-14  Score=90.99  Aligned_cols=103  Identities=20%  Similarity=0.234  Sum_probs=84.4

Q ss_pred             hHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCc
Q psy12892         55 TALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA  134 (315)
Q Consensus        55 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~  134 (315)
                      .-+.+++++|..+-|+..+..|-+++...                       .|++|||+|+..|..+++++|+..|+++
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-----------------------ggR~plhyAAD~GQl~ilefli~iGA~i   60 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-----------------------GGRTPLHYAADYGQLSILEFLISIGANI   60 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-----------------------CCcccchHhhhcchHHHHHHHHHhcccc
Confidence            34667888888888888888887766544                       5788999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHH
Q psy12892        135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHL  181 (315)
Q Consensus       135 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~  181 (315)
                      +.+|+.|-|||..|+.-||.+++++|++. |++-....++|.+.+..
T Consensus        61 ~~kDKygITPLLsAvwEGH~~cVklLL~~-GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   61 QDKDKYGITPLLSAVWEGHRDCVKLLLQN-GADRTIHAPDGTALIEA  106 (117)
T ss_pred             CCccccCCcHHHHHHHHhhHHHHHHHHHc-CcccceeCCCchhHHhh
Confidence            88898999999999999999999999986 88877777777665543

>KOG1710|consensus

Probab=99.56  E-value=3.6e-14  Score=108.17  Aligned_cols=121  Identities=21%  Similarity=0.288  Sum_probs=108.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHH
Q psy12892         21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLA  100 (315)
Q Consensus        21 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
                      .+||..++..|+.+....|++.--+++..|..|.+||..|+..|+.+++++|++.|+++|.....               
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg---------------   77 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHG---------------   77 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccccc---------------
Confidence            57899999999999999999887678999999999999999999999999999999999877654               


Q ss_pred             hhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy12892        101 NCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLAD  162 (315)
Q Consensus       101 ~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  162 (315)
                            .+.||||+|+.+|+.++.+.|++.|+.+...++-|+|+-.+|+.-|+-+++..+=+
T Consensus        78 ------~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   78 ------TLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             ------ccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence                  68899999999999999999999999999999999999999999999888776644

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=4.2e-14  Score=126.98  Aligned_cols=104  Identities=27%  Similarity=0.362  Sum_probs=94.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhh
Q psy12892         23 ALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANC  102 (315)
Q Consensus        23 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (315)
                      .|+.|+..|+.+.++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+.                  
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~------------------  146 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK------------------  146 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC------------------
Confidence            48899999999999999999999999999999999999999999999999999999998887                  


Q ss_pred             hhccCCChHHHHHHhcCCHHHHHHHHhC-------CCCcccCCCCCCcHHHHH
Q psy12892        103 LLMGEGQTALHIASAEGDEALVKYFYGA-------KANASITDHQDRTPMHLA  148 (315)
Q Consensus       103 ~~~~~~~~~l~~A~~~~~~~~v~~Ll~~-------~~~~~~~~~~~~~~l~~a  148 (315)
                          .|.||||+|+..++.+++++|+++       +++.+..+..|.+|+..+
T Consensus       147 ----~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        147 ----DGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             ----CCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence                799999999999999999999988       777776666666665444

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.54  E-value=1.5e-13  Score=108.45  Aligned_cols=128  Identities=34%  Similarity=0.510  Sum_probs=117.9

Q ss_pred             ccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCC-----HH
Q psy12892         48 IQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD-----EA  122 (315)
Q Consensus        48 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~-----~~  122 (315)
                      ..+..+.++++.++..+..+++++++..+++++..+.                      .|.||+|+|+..++     .+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------~g~t~l~~a~~~~~~~~~~~~  125 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA----------------------DGDTPLHLAALNGNPPEGNIE  125 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccC----------------------CCCcHHHHHHhcCCcccchHH
Confidence            4556688999999999999999999999999988777                      79999999999999     99


Q ss_pred             HHHHHHhCCC---CcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        123 LVKYFYGAKA---NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       123 ~v~~Ll~~~~---~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      +++.|++.|+   ..+..+..|.||+|+|+..|+.++++.|++. +.+++..+..|.|++++|+..++.+++..+++.+
T Consensus       126 ~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         126 VAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhc-CCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999   5666699999999999999999999999996 9999999999999999999999999999999865

>KOG1710|consensus

Probab=99.47  E-value=3.2e-13  Score=103.07  Aligned_cols=95  Identities=25%  Similarity=0.374  Sum_probs=86.6

Q ss_pred             hhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCccccc-CCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhh
Q psy12892         11 EQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQ-NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQR   89 (315)
Q Consensus        11 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   89 (315)
                      ..+|.+|.+|.|+|.-|+..|+.++|+.|++.|+|+|.. +..++||||+|+.+|+.++.++|++.|+.+...+.     
T Consensus        36 r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNs-----  110 (396)
T KOG1710|consen   36 RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNS-----  110 (396)
T ss_pred             hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccc-----
Confidence            348999999999999999999999999999999999865 56789999999999999999999999999887765     


Q ss_pred             HHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHH
Q psy12892         90 DIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF  127 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~L  127 (315)
                                       -|.|+-..|+.-|+.++|..+
T Consensus       111 -----------------vgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen  111 -----------------VGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             -----------------hhhhHHHHHHHhcchHHHHHH
Confidence                             688999999999998888765

>KOG0515|consensus

Probab=99.47  E-value=2.9e-13  Score=111.48  Aligned_cols=113  Identities=27%  Similarity=0.293  Sum_probs=56.2

Q ss_pred             HHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhcc
Q psy12892         27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMG  106 (315)
Q Consensus        27 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (315)
                      |+..|.+++|+..+..--|+...+..|.|+||-|+-.||.+||++|++.|+++|..+.                      
T Consensus       557 aaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DS----------------------  614 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADS----------------------  614 (752)
T ss_pred             hhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccC----------------------
Confidence            4445555555555554445555555555555555555555555555555555555544                      


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhCCCCcccC-CCCCCcHHHHHH--HcCCHHHHHHHH
Q psy12892        107 EGQTALHIASAEGDEALVKYFYGAKANASIT-DHQDRTPMHLAA--ENGHASIIELLA  161 (315)
Q Consensus       107 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~~~~l~~a~--~~~~~~~~~~Ll  161 (315)
                      +|+||||+|+..++..+++.|++.|+-+-.. -.++.|+...|-  +-|...+.+||.
T Consensus       615 dGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  615 DGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             CCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            4555555555555555555555555443221 123344444432  234444555443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.46  E-value=2.1e-13  Score=80.81  Aligned_cols=54  Identities=37%  Similarity=0.623  Sum_probs=29.2

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy12892        108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLA  161 (315)
Q Consensus       108 ~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  161 (315)
                      |.||||.|+..|+.+++++|++.|.+++..|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            345666666666666666666666666666666666666666666666666554

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=7.2e-14  Score=83.17  Aligned_cols=55  Identities=35%  Similarity=0.546  Sum_probs=33.0

Q ss_pred             HHHcC-CcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHH
Q psy12892         39 LVDYG-TSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIA  115 (315)
Q Consensus        39 Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A  115 (315)
                      |+++| .+++..|..|.||||+|+..|+.+++++|++.|++++.++.                      .|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~----------------------~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDK----------------------DGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---T----------------------TS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcC----------------------CCCCHHHhC
Confidence            57788 88999999999999999999999999999999999999998                      799999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.41  E-value=1.8e-12  Score=116.62  Aligned_cols=104  Identities=26%  Similarity=0.374  Sum_probs=91.6

Q ss_pred             HHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcc
Q psy12892         56 ALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANAS  135 (315)
Q Consensus        56 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~  135 (315)
                      .|+.|+..|+.++++.|++.|++++..+.                      .|.||||+|+..|+.+++++|++.|++++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~----------------------~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn  142 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDY----------------------DGRTPLHIACANGHVQVVRVLLEFGADPT  142 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCC----------------------CCCcHHHHHHHCCCHHHHHHHHHCCCCCC
Confidence            58889999999999999999999988776                      79999999999999999999999999999


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHh------cCccccccccCCccHHHH
Q psy12892        136 ITDHQDRTPMHLAAENGHASIIELLADK------FRASIFERTKENYNVLHL  181 (315)
Q Consensus       136 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~------~~~~~~~~~~~~~~~l~~  181 (315)
                      ..|..|.||||+|+..|+.+++++|+++      .+++.+..+..|.+++..
T Consensus       143 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~  194 (664)
T PTZ00322        143 LLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLE  194 (664)
T ss_pred             CCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccch
Confidence            9999999999999999999999999985      255566666656555443

>KOG0515|consensus

Probab=99.38  E-value=3.2e-12  Score=105.45  Aligned_cols=115  Identities=25%  Similarity=0.316  Sum_probs=81.1

Q ss_pred             HHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCC
Q psy12892         59 IASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD  138 (315)
Q Consensus        59 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~  138 (315)
                      =|+..|-+++|+..+..-.++...+.                      .|.|+||-|+.-|+.++|++|++.|+++|..|
T Consensus       556 DaaLeGEldlVq~~i~ev~DpSqpNd----------------------EGITaLHNAiCaghyeIVkFLi~~ganVNa~D  613 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTDPSQPND----------------------EGITALHNAICAGHYEIVKFLIEFGANVNAAD  613 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcCCCCCCc----------------------cchhHHhhhhhcchhHHHHHHHhcCCcccCcc
Confidence            36677778888877777777766665                      57788888888888888888888888888888


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCccccccc-cCCccHHHHHH--HcCcHHHHHHHHh
Q psy12892        139 HQDRTPMHLAAENGHASIIELLADKFRASIFERT-KENYNVLHLAA--MYSREDVVKLLLN  196 (315)
Q Consensus       139 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~~l~~a~--~~~~~~~~~~Ll~  196 (315)
                      ..|+||||.|+..++..+++.|++. |+.+.+.. .+..|+...+-  +-|...|.+||..
T Consensus       614 SdGWTPLHCAASCNnv~~ckqLVe~-GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  614 SDGWTPLHCAASCNNVPMCKQLVES-GAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             CCCCchhhhhhhcCchHHHHHHHhc-cceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            8888888888888888888888876 55555443 44556555442  2345566666653

>PF13606 Ank_3: Ankyrin repeat

Probab=99.12  E-value=8.8e-11  Score=59.47  Aligned_cols=29  Identities=41%  Similarity=0.793  Sum_probs=23.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCccc
Q psy12892         19 NGDTALHLAARKRDLDMVRILVDYGTSVD   47 (315)
Q Consensus        19 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   47 (315)
                      +|+||||+||+.|+.+++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47888888888888888888888888775

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.01  E-value=6.1e-10  Score=58.24  Aligned_cols=32  Identities=31%  Similarity=0.688  Sum_probs=26.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCcccccC
Q psy12892         19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQN   50 (315)
Q Consensus        19 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   50 (315)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            57888888888888888888888888887665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783|consensus

Probab=98.94  E-value=7.9e-10  Score=96.42  Aligned_cols=76  Identities=28%  Similarity=0.347  Sum_probs=70.7

Q ss_pred             hhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCC-CCChHHHHHHhcCCHHHHHHHHhccCCCccccccc
Q psy12892         11 EQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNG-EGQTALHIASAEGDEALVKYFYGAKANASITDHQG   86 (315)
Q Consensus        11 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   86 (315)
                      +..|.+|..|+|+||+|+..|..++++||+++|+++...|. .|+||||-|+..|+.+++-+|+++|+..-+.++++
T Consensus        43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeg  119 (1267)
T KOG0783|consen   43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEG  119 (1267)
T ss_pred             hhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccC
Confidence            45889999999999999999999999999999999998875 59999999999999999999999999998888843

>KOG0783|consensus

Probab=98.94  E-value=5.9e-10  Score=97.19  Aligned_cols=84  Identities=24%  Similarity=0.408  Sum_probs=80.2

Q ss_pred             ccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHH
Q psy12892         46 VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK  125 (315)
Q Consensus        46 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~  125 (315)
                      .+.+|..|+|+||.|+..+..+++++|+++|+++...+.+                     .|+||||.|+..|+++++.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~E---------------------SG~taLHRaiyyG~idca~  103 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEE---------------------SGYTALHRAIYYGNIDCAS  103 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeecccc---------------------ccchHhhHhhhhchHHHHH
Confidence            5678999999999999999999999999999999999987                     8999999999999999999


Q ss_pred             HHHhCCCCcccCCCCCCcHHHHHHH
Q psy12892        126 YFYGAKANASITDHQDRTPMHLAAE  150 (315)
Q Consensus       126 ~Ll~~~~~~~~~~~~~~~~l~~a~~  150 (315)
                      .|+.+|......|++|..||..-++
T Consensus       104 lLL~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  104 LLLSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHHhcCCceEEecccCCCHHHHHhh
Confidence            9999999999999999999998876

>PF13606 Ank_3: Ankyrin repeat

Probab=98.92  E-value=1.9e-09  Score=54.59  Aligned_cols=29  Identities=34%  Similarity=0.661  Sum_probs=27.4

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhccCCCc
Q psy12892         52 EGQTALHIASAEGDEALVKYFYGAKANAS   80 (315)
Q Consensus        52 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~   80 (315)
                      +|+||||+|+..|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            48999999999999999999999999886

>KOG0782|consensus

Probab=98.91  E-value=6.7e-09  Score=87.07  Aligned_cols=120  Identities=25%  Similarity=0.326  Sum_probs=101.3

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhh
Q psy12892         24 LHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCL  103 (315)
Q Consensus        24 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (315)
                      |..|+..+++--++....+|.++-..+.+..+.||+|++.|+.++|+|++++|+.--.-                    .
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld--------------------~  929 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLD--------------------M  929 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHH--------------------H
Confidence            55677777777777777788888888888999999999999999999999998742110                    0


Q ss_pred             hccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q psy12892        104 LMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK  163 (315)
Q Consensus       104 ~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  163 (315)
                      .+..|.|+||.|+..++..+.++|++.|+.+...|..|.||-..|-+.|..++..||-++
T Consensus       930 ~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  930 ADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            112799999999999999999999999999999999999999999999999999998764

>KOG0818|consensus

Probab=98.87  E-value=1.3e-08  Score=83.90  Aligned_cols=95  Identities=22%  Similarity=0.314  Sum_probs=85.2

Q ss_pred             ccCCCCCh------HHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCH
Q psy12892         48 IQNGEGQT------ALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDE  121 (315)
Q Consensus        48 ~~~~~g~t------~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~  121 (315)
                      .+|.+|.+      -||..+..|+.+..-.|+..|+++|....+                     .|.||||.|++.|+.
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpe---------------------kg~TpLHvAAk~Gq~  180 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPE---------------------KGNTPLHVAAKAGQI  180 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcc---------------------cCCchhHHHHhccch
Confidence            45556554      489999999999999999999999998876                     799999999999999


Q ss_pred             HHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q psy12892        122 ALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK  163 (315)
Q Consensus       122 ~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  163 (315)
                      .-++.|+-+|+++...|.+|.||+.+|-..||-++.+.|++.
T Consensus       181 ~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  181 LQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             hhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            999999999999999999999999999999999988888774

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.79  E-value=9.4e-09  Score=53.68  Aligned_cols=32  Identities=31%  Similarity=0.509  Sum_probs=29.9

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhccCCCcccc
Q psy12892         52 EGQTALHIASAEGDEALVKYFYGAKANASITD   83 (315)
Q Consensus        52 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~   83 (315)
                      +|.||||+|+..|+.+++++|+++|++++..+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            58899999999999999999999999998765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506|consensus

Probab=98.76  E-value=1.2e-08  Score=83.65  Aligned_cols=95  Identities=26%  Similarity=0.353  Sum_probs=85.2

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHh-ccCCCccccccchhhHHHh
Q psy12892         15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG-AKANASITDHQGIQRDIAA   93 (315)
Q Consensus        15 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~   93 (315)
                      .++.++..++.+|++.|++..++.+.-.|.|++.+|.+.+|+||.|+..|+.+++++|++ .+.+++.++.         
T Consensus       501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDR---------  571 (622)
T KOG0506|consen  501 PRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDR---------  571 (622)
T ss_pred             cccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhc---------
Confidence            344577889999999999999999999999999999999999999999999999999996 4667777765         


Q ss_pred             hhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCC
Q psy12892         94 AGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK  131 (315)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~  131 (315)
                                   .|+|||.-|...++.+++++|.+..
T Consensus       572 -------------w~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  572 -------------WGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             -------------cCCCcchHhHhcCcHHHHHHHHHHh
Confidence                         8999999999999999999998654

>KOG0818|consensus

Probab=98.74  E-value=5.4e-08  Score=80.35  Aligned_cols=95  Identities=22%  Similarity=0.310  Sum_probs=84.5

Q ss_pred             ccccccCCCc------HHHHHHHcCCHHHHHHHHHcCCcccccCC-CCChHHHHHHhcCCHHHHHHHHhccCCCcccccc
Q psy12892         13 LKATTINGDT------ALHLAARKRDLDMVRILVDYGTSVDIQNG-EGQTALHIASAEGDEALVKYFYGAKANASITDHQ   85 (315)
Q Consensus        13 ~~~~~~~g~t------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   85 (315)
                      +..+|.+|.+      -||.+++.|+++++-.|+..|+++|..+. .|.||||+|++.|+.--+++|+-+|+++...+. 
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~-  198 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDS-  198 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCC-
Confidence            5567777766      49999999999999999999999997754 589999999999999999999999999999887 


Q ss_pred             chhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHh
Q psy12892         86 GIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG  129 (315)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~  129 (315)
                                           .|.||+.+|-..|+-++.+.|++
T Consensus       199 ---------------------~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  199 ---------------------SGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             ---------------------CCCcHHHHHHhcCchHHHHHHHH
Confidence                                 79999999999999888877664

>KOG0782|consensus

Probab=98.70  E-value=3.6e-08  Score=82.78  Aligned_cols=97  Identities=29%  Similarity=0.420  Sum_probs=86.9

Q ss_pred             hccccccCCCcHHHHHHHcCCHHHHHHHHHcCCc--ccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhh
Q psy12892         12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTS--VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQR   89 (315)
Q Consensus        12 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   89 (315)
                      ++=.++.+..|.||+|+..|+-++|++++++|..  ++..|..|.|+||-|+-.++..+.++|++.|+..-..+.     
T Consensus       891 ~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~-----  965 (1004)
T KOG0782|consen  891 SLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDS-----  965 (1004)
T ss_pred             ceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheeccc-----
Confidence            4566788899999999999999999999999965  566789999999999999999999999999999877776     


Q ss_pred             HHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhC
Q psy12892         90 DIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGA  130 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~  130 (315)
                                       .|.||-..|-+-|++++.-||-..
T Consensus       966 -----------------kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  966 -----------------KGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             -----------------CCCChHHHHHhcCCchHHHHHhhh
Confidence                             799999999999999999998643

>KOG0506|consensus

Probab=98.67  E-value=3.1e-08  Score=81.37  Aligned_cols=91  Identities=23%  Similarity=0.333  Sum_probs=71.3

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCc
Q psy12892        108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSR  187 (315)
Q Consensus       108 ~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~  187 (315)
                      +..++++|+..|+...++.+.-.|.++...|.+.+|+||.|+.-|+.++++||++..+.+++..|.-|+|||.-|...++
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h  585 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKH  585 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCc
Confidence            34567788888888888877777888888888888888888888888888888887778888888778888888888888


Q ss_pred             HHHHHHHHhcC
Q psy12892        188 EDVVKLLLNKK  198 (315)
Q Consensus       188 ~~~~~~Ll~~~  198 (315)
                      .+++++|-+..
T Consensus       586 ~~v~k~L~~~~  596 (622)
T KOG0506|consen  586 KEVVKLLEEAQ  596 (622)
T ss_pred             HHHHHHHHHHh
Confidence            88877776654

>KOG0511|consensus

Probab=98.62  E-value=1.1e-07  Score=76.09  Aligned_cols=60  Identities=33%  Similarity=0.355  Sum_probs=56.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcc
Q psy12892         22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI   81 (315)
Q Consensus        22 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~   81 (315)
                      --|..||+.|+++.|++|++.|.++|..|.+..+||.+|+..||.+++++|++.|+-.+.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r   97 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR   97 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc
Confidence            358899999999999999999999999999999999999999999999999999986443

>KOG2384|consensus

Probab=98.59  E-value=2e-07  Score=67.46  Aligned_cols=74  Identities=23%  Similarity=0.258  Sum_probs=67.7

Q ss_pred             hhccccccCCCcHHHHHHHcCCHHHHHHHHHcC-CcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccc
Q psy12892         11 EQLKATTINGDTALHLAARKRDLDMVRILVDYG-TSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDH   84 (315)
Q Consensus        11 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~   84 (315)
                      .++|.+|..|.|+|+.|+..|+.+.+.+|+.+| +.|...|..|.+++.+|-+.|..++++.|.+...+.+..+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n   77 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN   77 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence            469999999999999999999999999999999 89999999999999999999999999999988666555444

>KOG0522|consensus

Probab=98.59  E-value=1.4e-07  Score=78.80  Aligned_cols=68  Identities=31%  Similarity=0.453  Sum_probs=62.7

Q ss_pred             chhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhcc
Q psy12892          9 TAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAK   76 (315)
Q Consensus         9 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~   76 (315)
                      ....++.+|..|.||||.|+..|+.+.++.|+..|+++..++..|++|||.|+..|+.+++..++.+.
T Consensus        44 ~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   44 VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence            34468999999999999999999999999999999999999999999999999999999998887543

>KOG0705|consensus

Probab=98.58  E-value=2.4e-07  Score=78.06  Aligned_cols=100  Identities=24%  Similarity=0.319  Sum_probs=83.1

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCccc----ccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchh
Q psy12892         13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVD----IQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQ   88 (315)
Q Consensus        13 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~   88 (315)
                      +.+++..--.-|..|+...++..+-+|+.+|....    ..+.+|.|+||+||..|++.+.++|+.+|+++...+.    
T Consensus       617 l~~te~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda----  692 (749)
T KOG0705|consen  617 LPCTEEPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDA----  692 (749)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceeccc----
Confidence            33433333334667888899999999999986533    3356789999999999999999999999999998887    


Q ss_pred             hHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCc
Q psy12892         89 RDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA  134 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~  134 (315)
                                        .|.|+|++|-..|.-+++..|+.+|...
T Consensus       693 ------------------~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  693 ------------------HGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             ------------------CCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence                              7999999999999999999999998754

>KOG0522|consensus

Probab=98.52  E-value=2.9e-07  Score=76.98  Aligned_cols=87  Identities=26%  Similarity=0.378  Sum_probs=75.4

Q ss_pred             cHHHHHHHcCCHHHHHHHH--HcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhH
Q psy12892         22 TALHLAARKRDLDMVRILV--DYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVL   99 (315)
Q Consensus        22 t~L~~A~~~~~~~~v~~Ll--~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (315)
                      -|+|+++...+.+-....+  +.+..++..|..|.||||.|+..|+.+.++.|+..|+++...+.               
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~---------------   86 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNN---------------   86 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcccccc---------------
Confidence            4699999988877666644  33456888999999999999999999999999999999999888               


Q ss_pred             HhhhhccCCChHHHHHHhcCCHHHHHHHHhC
Q psy12892        100 ANCLLMGEGQTALHIASAEGDEALVKYFYGA  130 (315)
Q Consensus       100 ~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~  130 (315)
                             .|++|||-|+..|+.+++..++.+
T Consensus        87 -------~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   87 -------EGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             -------ccccHHHHHHHcCCHHHHHHHHHH
Confidence                   799999999999999888877753

>KOG3609|consensus

Probab=98.50  E-value=2.7e-07  Score=81.55  Aligned_cols=133  Identities=21%  Similarity=0.166  Sum_probs=100.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcC---ccccccccCCccHHHHHHHcCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHH
Q psy12892        140 QDRTPMHLAAENGHASIIELLADKFR---ASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSRED  216 (315)
Q Consensus       140 ~~~~~l~~a~~~~~~~~~~~Ll~~~~---~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~  216 (315)
                      .+..-+..|++.|+...++..++...   ..++..|.-|+++++.|..+.+.+++++|++..... ..+|.+|+..+..+
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-gdALL~aI~~~~v~  102 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-GDALLLAIAVGSVP  102 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-chHHHHHHHHHHHH
Confidence            34556778899999988888887533   356777888999999999999999999999876555 57888899999999


Q ss_pred             HHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceee
Q psy12892        217 VVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIR  292 (315)
Q Consensus       217 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~  292 (315)
                      .++.++. +.............   +.            .....+-||+.+||..   ++.+++++|+.+|+++..
T Consensus       103 ~VE~ll~-~~~~~~~~~~~~d~---~~------------~~ft~ditPliLAAh~---NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  103 LVELLLV-HFVDAPYLERSGDA---NS------------PHFTPDITPLMLAAHL---NNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHh-cccccchhcccccc---Cc------------ccCCCCccHHHHHHHh---cchHHHHHHHHcCCCCCC
Confidence            9999998 54443322211111   10            0234567999999999   999999999999998753

>KOG0705|consensus

Probab=98.39  E-value=5.8e-07  Score=75.84  Aligned_cols=65  Identities=31%  Similarity=0.452  Sum_probs=60.4

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCc
Q psy12892         16 TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANAS   80 (315)
Q Consensus        16 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~   80 (315)
                      .+.+|+|+||.||+.|++.+.+.|+=+|+|+-..|..|.|+|.||-..|..+++..|+.+|....
T Consensus       657 ~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  657 GEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             cCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            34577999999999999999999999999999999999999999999999999999999997643

>KOG3609|consensus

Probab=98.39  E-value=1.7e-06  Score=76.71  Aligned_cols=120  Identities=25%  Similarity=0.317  Sum_probs=92.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC----CcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhh
Q psy12892         20 GDTALHLAARKRDLDMVRILVDYG----TSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAG   95 (315)
Q Consensus        20 g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~   95 (315)
                      +.--.-.|+..|+.-.|+..++..    .++|..|.-|.++|+.|+.+.+.+++++|+++....                
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~----------------   88 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE----------------   88 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc----------------
Confidence            344566788999999999888653    456778888999999999999999999998877653                


Q ss_pred             hhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcc----------cCCCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q psy12892         96 TSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANAS----------ITDHQDRTPMHLAAENGHASIIELLADKFR  165 (315)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~----------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  165 (315)
                                   ..+|.+|+..|..+.|+.++.+.....          .....+-||+..||..++.|+++.|+++ |
T Consensus        89 -------------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k-g  154 (822)
T KOG3609|consen   89 -------------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR-G  154 (822)
T ss_pred             -------------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc-C
Confidence                         258889999999999998886543321          1233456899999999999999999987 6


Q ss_pred             cccc
Q psy12892        166 ASIF  169 (315)
Q Consensus       166 ~~~~  169 (315)
                      +++.
T Consensus       155 ~~i~  158 (822)
T KOG3609|consen  155 HCIP  158 (822)
T ss_pred             CCCC
Confidence            6653

>KOG0521|consensus

Probab=98.30  E-value=7.3e-07  Score=80.78  Aligned_cols=89  Identities=26%  Similarity=0.399  Sum_probs=79.8

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhh
Q psy12892         17 TINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGT   96 (315)
Q Consensus        17 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   96 (315)
                      -..|.|+||.|+..|..-++++|+++|+++|..|..|.+|+|.+...|+...+..|++.|++.+..+.            
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~------------  720 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDP------------  720 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCc------------
Confidence            35689999999999999999999999999999999999999999999999999999999999998887            


Q ss_pred             hhHHhhhhccCCChHHHHHHhcCCHHHHHHH
Q psy12892         97 SVLANCLLMGEGQTALHIASAEGDEALVKYF  127 (315)
Q Consensus        97 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~L  127 (315)
                                .|.+|+.+|....+.+.+-++
T Consensus       721 ----------~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  721 ----------DGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             ----------cCcchhhHHhhhccccHHHHH
Confidence                      688999999776655554443

>KOG0520|consensus

Probab=98.16  E-value=3.4e-06  Score=76.45  Aligned_cols=129  Identities=23%  Similarity=0.259  Sum_probs=101.3

Q ss_pred             hccccccCCCcHHHHHHHcCCHHHHHHHHHc-CCcccccCCCCChHHHHHHhcCCHHHHHHHH-hccCCCccccccchhh
Q psy12892         12 QLKATTINGDTALHLAARKRDLDMVRILVDY-GTSVDIQNGEGQTALHIASAEGDEALVKYFY-GAKANASITDHQGIQR   89 (315)
Q Consensus        12 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~~~   89 (315)
                      ........|.+.+|.++..+..-.++.+++. |......|.+|.-.+|+ |..++.+..-+++ ..|..+++++.     
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~-----  639 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDR-----  639 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccC-----
Confidence            3455566889999999999999999999997 66666677777788888 4455555555554 67778888887     


Q ss_pred             HHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCccc------CCCCCCcHHHHHHHcCCHHHHHHHHHh
Q psy12892         90 DIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI------TDHQDRTPMHLAAENGHASIIELLADK  163 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~------~~~~~~~~l~~a~~~~~~~~~~~Ll~~  163 (315)
                                       .|+||||+|+..|+..++..|.+.|+....      ....|.|+...|..+|+..+.-+|-+.
T Consensus       640 -----------------~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  640 -----------------NGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             -----------------CCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence                             799999999999999999999977765443      344688999999999988877777653

>KOG2384|consensus

Probab=98.14  E-value=8.5e-06  Score=59.23  Aligned_cols=64  Identities=27%  Similarity=0.342  Sum_probs=56.6

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhCC-CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccc
Q psy12892        107 EGQTALHIASAEGDEALVKYFYGAK-ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFER  171 (315)
Q Consensus       107 ~~~~~l~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  171 (315)
                      .|+|++++|+..|..+.+.||+..| +.+...+..+.+++.+|-+.|..++++.|.+. -.+....
T Consensus        11 fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~-~~ets~p   75 (223)
T KOG2384|consen   11 FGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN-DRETSHP   75 (223)
T ss_pred             hcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH-hccCCCc
Confidence            8999999999999999999999999 88889999999999999999999999999985 3333333

>KOG0511|consensus

Probab=98.05  E-value=1.6e-05  Score=64.02  Aligned_cols=71  Identities=24%  Similarity=0.206  Sum_probs=60.5

Q ss_pred             ChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCC
Q psy12892         54 QTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN  133 (315)
Q Consensus        54 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~  133 (315)
                      .--|..||..|..+.+++|++.|.++|..+.                      ...+||.+|...|+.+++++|+++|+-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~----------------------fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDR----------------------FDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhc----------------------ccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            3457899999999999999999999999887                      677999999999999999999999988


Q ss_pred             cccCCCCCCcHHH
Q psy12892        134 ASITDHQDRTPMH  146 (315)
Q Consensus       134 ~~~~~~~~~~~l~  146 (315)
                      ...-..+|..++.
T Consensus        95 C~rdtf~G~RC~Y  107 (516)
T KOG0511|consen   95 CSRDTFDGDRCHY  107 (516)
T ss_pred             ccccccCcchhhh
Confidence            7655555655543

>KOG0521|consensus

Probab=98.03  E-value=4.9e-06  Score=75.56  Aligned_cols=85  Identities=29%  Similarity=0.379  Sum_probs=70.1

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcC
Q psy12892        107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS  186 (315)
Q Consensus       107 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~  186 (315)
                      .|.++||.|+..+..-+++.|++.|++++..+..|++|+|.+...|+......++++ +++.+..+..+..++.+|....
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~-~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKR-GADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccc-cccccccCccCcchhhHHhhhc
Confidence            577888888888888888888888888888888888888888888888888888885 8888888888888888887664


Q ss_pred             cHHHHH
Q psy12892        187 REDVVK  192 (315)
Q Consensus       187 ~~~~~~  192 (315)
                      +.+.+-
T Consensus       734 ~~d~~~  739 (785)
T KOG0521|consen  734 NADIVL  739 (785)
T ss_pred             cccHHH
Confidence            444433

>KOG0520|consensus

Probab=97.66  E-value=4.5e-05  Score=69.48  Aligned_cols=116  Identities=17%  Similarity=0.107  Sum_probs=91.9

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhC-CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHc
Q psy12892        107 EGQTALHIASAEGDEALVKYFYGA-KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMY  185 (315)
Q Consensus       107 ~~~~~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~  185 (315)
                      .|.+-+|+++..+..-+++.+++- +......+..|...+|+|+.. +.+..-.++.-.+..++.+|..|+||||||+.+
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~l-g~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~  651 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAAL-GYEWAFLPISADGVAIDIRDRNGWTPLHWAAFR  651 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhc-CCceeEEEEeecccccccccCCCCcccchHhhc
Confidence            678899999999999999999875 666677788888899995544 444444444334888999999999999999999


Q ss_pred             CcHHHHHHHHhcC------------CCCCCcHHHHHHHcCCHHHHHHHHh
Q psy12892        186 SREDVVKLLLNKK------------GIENYNVLHLAAMYSREDVVKLLLN  223 (315)
Q Consensus       186 ~~~~~~~~Ll~~~------------~~~~~~~l~~A~~~~~~~~~~~Ll~  223 (315)
                      |+..++..|...+            ...|.|+-..|...|+..+.-+|-+
T Consensus       652 G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  652 GREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             CHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            9999999999655            3457788888888887777666654

>KOG2505|consensus

Probab=97.64  E-value=3.4e-05  Score=64.41  Aligned_cols=71  Identities=10%  Similarity=-0.006  Sum_probs=57.3

Q ss_pred             CCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceee
Q psy12892        213 SREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIR  292 (315)
Q Consensus       213 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~  292 (315)
                      .-++.+++|.+ ++.+.|..-.-..                   .+.-..|+||+|+..   |..+++.+||+.|+||.+
T Consensus       402 ~~p~~ie~lke-n~lsgnf~~~pe~-------------------~~~ltsT~LH~aa~q---g~~k~v~~~Leeg~Dp~~  458 (591)
T KOG2505|consen  402 PEPDSIEALKE-NLLSGNFDVTPEA-------------------NDYLTSTFLHYAAAQ---GARKCVKYFLEEGCDPST  458 (591)
T ss_pred             CchhHHHHHHh-cCCcccccccccc-------------------cccccchHHHHHHhc---chHHHHHHHHHhcCCchh
Confidence            44778888888 8888765311000                   234467999999999   999999999999999999


Q ss_pred             eccCCceeEEEeec
Q psy12892        293 MTVDGTLILYYRGK  306 (315)
Q Consensus       293 ~~~~g~t~l~~A~~  306 (315)
                      +|..|.||..++..
T Consensus       459 kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  459 KDGAGRTPYSLSAN  472 (591)
T ss_pred             cccCCCCccccccc
Confidence            99999999999873

>smart00248 ANK ankyrin repeats

Probab=97.50  E-value=0.0002  Score=35.34  Aligned_cols=27  Identities=44%  Similarity=0.823  Sum_probs=17.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCcc
Q psy12892         20 GDTALHLAARKRDLDMVRILVDYGTSV   46 (315)
Q Consensus        20 g~t~L~~A~~~~~~~~v~~Ll~~g~~~   46 (315)
                      |.||+|+|+..++.++++.|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            566666666666666666666666544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.39  E-value=0.0029  Score=46.31  Aligned_cols=45  Identities=22%  Similarity=0.194  Sum_probs=30.7

Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy12892        179 LHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLN  223 (315)
Q Consensus       179 l~~a~~~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~  223 (315)
                      |.+|+..|-...+...++.|+....++|..|+.+++..++.+++.
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDIIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccHHHHHHHHHhhHHHHHHHhhc
Confidence            556777777666666666666555577777777777777777664

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=97.26  E-value=0.0006  Score=33.51  Aligned_cols=29  Identities=31%  Similarity=0.581  Sum_probs=25.7

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhccCCCc
Q psy12892         52 EGQTALHIASAEGDEALVKYFYGAKANAS   80 (315)
Q Consensus        52 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~   80 (315)
                      .|.||+|+|+..++.++++.|++.+.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36899999999999999999999887653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.77  E-value=0.0015  Score=55.08  Aligned_cols=47  Identities=23%  Similarity=0.359  Sum_probs=40.2

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHH
Q psy12892         15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIAS   61 (315)
Q Consensus        15 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~   61 (315)
                      ..+....|+||+|+..|..++|.+||+.|+|+..+|..|.||...+.
T Consensus       425 ~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  425 ANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            34455688999999999999999999999999999999999988876

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.63  E-value=0.018  Score=43.71  Aligned_cols=110  Identities=15%  Similarity=0.188  Sum_probs=76.7

Q ss_pred             HHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccc--cCCccHHHHHHH--cC
Q psy12892        111 ALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERT--KENYNVLHLAAM--YS  186 (315)
Q Consensus       111 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--~~~~~~l~~a~~--~~  186 (315)
                      .|--|+...+.+-+.-++....       ...+++-+++.++..+++-+|+.++...-...-  ..+.--+.++..  ..
T Consensus       156 sledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a  228 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKK-------DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSA  228 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCC
Confidence            4556777777777666664332       235788889988899999999986543321110  111223444433  34


Q ss_pred             cHHHHHHHHhcC----------CCCCCcHHHHHHHcCCHHHHHHHHhccCCc
Q psy12892        187 REDVVKLLLNKK----------GIENYNVLHLAAMYSREDVVKLLLNKKGIN  228 (315)
Q Consensus       187 ~~~~~~~Ll~~~----------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~  228 (315)
                      +..++++++++|          ...|.|.|.-|+++++.+++.+|++ +|+-
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk-~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLK-YGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHH-cCcc
Confidence            678899999988          5578999999999999999999999 8873

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.53  E-value=0.018  Score=42.29  Aligned_cols=137  Identities=17%  Similarity=0.153  Sum_probs=93.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhh
Q psy12892         23 ALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANC  102 (315)
Q Consensus        23 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (315)
                      .|.-|++.+-+.+++..-+...+-   -...++.+..||...+.++|+|+-.   +....+                   
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~q---nL~i~~-------------------  103 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQ---NLHIYN-------------------  103 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhh---ccCCCC-------------------
Confidence            567799999999999887754321   2456789999999999999999832   222222                   


Q ss_pred             hhccCCChHHHHHHhcCCHHHHHH----HHhCCCCcccCCCC--CCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCc
Q psy12892        103 LLMGEGQTALHIASAEGDEALVKY----FYGAKANASITDHQ--DRTPMHLAAENGHASIIELLADKFRASIFERTKENY  176 (315)
Q Consensus       103 ~~~~~~~~~l~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  176 (315)
                           -.+.+-+|+...+.++...    ++++...-...|..  -..-|..|+..|-...+...++. |.+++      .
T Consensus       104 -----~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlky-gg~~~------~  171 (192)
T PF03158_consen  104 -----PEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKY-GGNVD------I  171 (192)
T ss_pred             -----chhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHc-CCccc------H
Confidence                 2345667777777766542    33332222111110  11347788999999999888885 66664      3


Q ss_pred             cHHHHHHHcCcHHHHHHHHh
Q psy12892        177 NVLHLAAMYSREDVVKLLLN  196 (315)
Q Consensus       177 ~~l~~a~~~~~~~~~~~Ll~  196 (315)
                      +.|..|+.+++..++.+++.
T Consensus       172 ~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  172 IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHhhHHHHHHHhhc
Confidence            78899999999999988864

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.06  E-value=0.0095  Score=45.16  Aligned_cols=113  Identities=15%  Similarity=0.152  Sum_probs=73.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcCCCCC---------CcHHHHHH--Hc
Q psy12892        144 PMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIEN---------YNVLHLAA--MY  212 (315)
Q Consensus       144 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~---------~~~l~~A~--~~  212 (315)
                      .|.-|+...+.+-+.-++.. .       .+..+++.++..++..+++.+|+.+.....         .--+.++.  ..
T Consensus       156 sledAV~AsN~~~i~~~Vtd-K-------kdA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~  227 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTD-K-------KDAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHS  227 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcc-h-------HHHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcC
Confidence            45667777777666666653 1       123578899999999999999997652211         11122221  12


Q ss_pred             CCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccc
Q psy12892        213 SREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGR  289 (315)
Q Consensus       213 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~  289 (315)
                      .+..++++++++.-+++|..-                      .+.++|.|-|.-|..+   ++.+++.+||++||-
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F----------------------~~~NSGdtMLDNA~Ky---~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKF----------------------QKVNSGDTMLDNAMKY---KNSEMIAFLLKYGAI  279 (284)
T ss_pred             CcHHHHHHHHhccccccchhh----------------------hccCCcchHHHhHHhc---CcHHHHHHHHHcCcc
Confidence            345566666663334555321                      2467899999999999   999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.97  E-value=0.017  Score=36.47  Aligned_cols=45  Identities=16%  Similarity=0.283  Sum_probs=19.5

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy12892        178 VLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLN  223 (315)
Q Consensus       178 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~  223 (315)
                      .+..|+..|+.++++.+++.+... ...+..|+.+-+-++++||++
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~~~-~~~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNKPD-NDCLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhccH-HHHHHHHHHHhhHHHHHHHHH
Confidence            344444444444444444332111 233444444444444444444

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.15  E-value=0.059  Score=34.01  Aligned_cols=50  Identities=12%  Similarity=0.230  Sum_probs=34.1

Q ss_pred             hHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q psy12892        110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA  166 (315)
Q Consensus       110 ~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~  166 (315)
                      ..+..|+..|+.|+++.+++.+ .++      ...+..|+...+-++++||++++..
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~y~~   57 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIENYNL   57 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHhcCC
Confidence            4567777788888888777544 111      3567777777777888888776433

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	315
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-17
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-13
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-09
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-14
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-13
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-14
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-11
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-11
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-13
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		8e-11
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		8e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		7e-08
1uoh_A	226	Human Gankyrin Length = 226		8e-10
1uoh_A	226	Human Gankyrin Length = 226		3e-06
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-09
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-09
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		6e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-09
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-09
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-09
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-08
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-08
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-08
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-06
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		1e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		6e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		9e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		6e-07
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		6e-07
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		6e-07
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-06
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-06
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-06
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		4e-05
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		6e-06
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		6e-06
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		8e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		3e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		5e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		7e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		7e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		8e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		8e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		9e-05
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		1e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		3e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		3e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		3e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 29/217 (13%)
Query: 16  TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
           + +  +T LH+AAR    ++ + L+     V+ +  + QT LH A+  G   +VK     
Sbjct: 43  SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102
Query: 76  KANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANAS 135
            AN ++            A T+          G T LHIA+ EG    V      +A+ +
Sbjct: 103 NANPNL------------ATTA----------GHTPLHIAAREGHVETVLALLEKEASQA 140
Query: 136 ITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
               +  TP+H+AA+ G   + ELL ++  A      K     LH+A  ++  D+VKLLL
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 199
Query: 196 NKKGIEN------YNVLHLAAMYSREDVVKLLLNKKG 226
            + G  +      Y  LH+AA  ++ +V + LL   G
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 22/142 (15%)
Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
           NG T LHLAAR   L++V++L++ G  V+ ++  G+T LH+A+  G   +VK    A A+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
            +  D                        G+T LH+A+  G   +VK    A A+ +  D
Sbjct: 61  VNAKDKN----------------------GRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Query: 139 HQDRTPMHLAAENGHASIIELL 160
              RTP+HLAA NGH  +++LL
Sbjct: 99  KNGRTPLHLAARNGHLEVVKLL 120

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
           G+T LH+A+  G   +VK    A A+ +  D   RTP+HLAA NGH  +++LL +   A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-AD 60
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
           +  + K     LHLAA     +VVKLLL      N K       LHLAA     +VVKLL
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 222 L 222
           L
Sbjct: 121 L 121

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
Query: 142 RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------ 195
           RTP+HLAA NGH  +++LL +   A +  + K     LHLAA     +VVKLLL      
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 196 NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQV 255
           N K       LHLAA     +VVKLLL + G +V A   +D  GR  L +     +L  V
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNA---KDKNGRTPLHLAARNGHLEVV 117
Query: 256 YLI 258
            L+
Sbjct: 118 KLL 120

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 35/179 (19%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
           AA   + D V+ L++ G  V+  + +G+T LH+A+  G + +VK     GA  NA  +D 
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD- 69
Query: 85  QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
                                  G+T LH+A+  G + +VK      A+ +  D   +TP
Sbjct: 70  -----------------------GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTP 106
Query: 145 MHLAAENGHASIIELL----ADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKG 199
           +HLAAENGH  +++LL    AD   +    RT      L LA  +  E+VVKLL  + G
Sbjct: 107 LHLAAENGHKEVVKLLLSQGADPNTSDSDGRTP-----LDLAREHGNEEVVKLLEKQGG 160

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
           +G+T LH+A+  G + +VK      A+ +  D   +TP+HLAAENGH  +++LL  +  A
Sbjct: 36  DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG-A 94
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYN------VLHLAAMYSREDVVKL 220
               +  +    LHLAA    ++VVKLLL++    N +       L LA  +  E+VVKL
Sbjct: 95  DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 221 LLNKKG 226
           L  + G
Sbjct: 155 LEKQGG 160

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 27/175 (15%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
           AA   + D V+ L++ G  V+  + +G+T LH A+ EG + +VK     GA  NA  +D 
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD- 69
Query: 85  QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
                                  G+T LH A+ EG + +VK      A+ +  D   RTP
Sbjct: 70  -----------------------GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTP 106
Query: 145 MHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKG 199
           +H AA+ GH  I++LL  K  A +     +    L LA  +  E++VKLL  + G
Sbjct: 107 LHYAAKEGHKEIVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
           +G+T LH A+ EG + +VK      A+ +  D   RTP+H AA+ GH  I++LL  K  A
Sbjct: 36  DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG-A 94
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYN------VLHLAAMYSREDVVKL 220
            +  +  +    LH AA    +++VKLL++K    N +       L LA  +  E++VKL
Sbjct: 95  DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKL 154
Query: 221 LLNKKG 226
           L  + G
Sbjct: 155 LEKQGG 160

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 27/175 (15%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
           AA   + D V+ L++ G  V+  + +G+T LH A+  G + +VK     GA  NA  +D 
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD- 69
Query: 85  QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
                                  G+T LH A+  G + +VK      A+ +  D   RTP
Sbjct: 70  -----------------------GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTP 106
Query: 145 MHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKG 199
           +H AAENGH  +++LL  K  A +     +    L LA  +  E+VVKLL  + G
Sbjct: 107 LHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
           +G+T LH A+  G + +VK      A+ +  D   RTP+H AAENGH  +++LL  K  A
Sbjct: 36  DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG-A 94
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYN------VLHLAAMYSREDVVKL 220
            +  +  +    LH AA    ++VVKLL++K    N +       L LA  +  E+VVKL
Sbjct: 95  DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 221 LLNKKG 226
           L  + G
Sbjct: 155 LEKQGG 160

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 27/175 (15%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
           AA   + D V+ L++ G   +  + +G+T LH A+  G + +VK     GA  NA  +D 
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD- 69
Query: 85  QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
                                  G+T LH A+  G + +VK      A+ +  D   RTP
Sbjct: 70  -----------------------GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTP 106
Query: 145 MHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKG 199
           +H AAENGH  I++LL  K  A       +    L LA  +  E++VKLL  + G
Sbjct: 107 LHYAAENGHKEIVKLLLSKG-ADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
           +G+T LH A+  G + +VK      A+ +  D   RTP+H AAENGH  I++LL  K  A
Sbjct: 36  DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG-A 94
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYN------VLHLAAMYSREDVVKL 220
               +  +    LH AA    +++VKLLL+K    N +       L LA  +  E++VKL
Sbjct: 95  DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKL 154
Query: 221 LLNKKG 226
           L  + G
Sbjct: 155 LEKQGG 160

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 31/160 (19%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
           AAR    D VRIL+  G  V+ ++ +G T LH+A+ EG   +V+    A A+ +  D   
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-- 78
Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
                               +G T LH+A+ EG   +V+    A A+ +  D    TP+H
Sbjct: 79  --------------------DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 118
Query: 147 LAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           LAA  GH  I+E+L          DKF  + F+ + +N N
Sbjct: 119 LAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGN 158

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 31/160 (19%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
           AAR    D VRIL+  G  V+ ++ +G T LH+A+ EG   +V+    A A+ +  D   
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-- 66
Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
                               +G T LH+A+ EG   +V+    A A+ +  D    TP+H
Sbjct: 67  --------------------DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 106
Query: 147 LAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           LAA  GH  I+E+L          DKF  + F+   +N N
Sbjct: 107 LAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGN 146

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 23/168 (13%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
           AAR    D VRIL+  G  V+ ++ +G T LH+A+ EG   +V+    A A+ +  D   
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-- 66
Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
                               +G T LH+A+ EG   +V+    A A+ +  D    TP+H
Sbjct: 67  --------------------DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 106
Query: 147 LAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
           LAA  GH  I+E+L  K  A +  + K       LA     ED+ ++L
Sbjct: 107 LAAREGHLEIVEVLL-KAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 74/164 (45%), Gaps = 39/164 (23%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
           AAR    D VRIL+  G  V+  + +G T LH+A+  G   +V+    +GA  NA  TD 
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD- 79
Query: 85  QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDR 142
                                  G T LH+A+  G   +V+    YGA  NA   D    
Sbjct: 80  -----------------------GWTPLHLAADNGHLEIVEVLLKYGADVNAQ--DAYGL 114
Query: 143 TPMHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           TP+HLAA+ GH  I+E+L          DKF  + F+ + +N N
Sbjct: 115 TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 107 EGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKF 164
           +G T LH+A+  G   +V+    +GA  NA  TD    TP+HLAA+NGH  I+E+L  K+
Sbjct: 46  QGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD--GWTPLHLAADNGHLEIVEVLL-KY 102
Query: 165 RASIFERTKENYNVLHLAAMYSREDVVKLLL 195
            A +  +       LHLAA     ++V++LL
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
           G+T LH+A+  G   +VK    A A+ +  D   RTP+HLAA NGH  +++LL +   A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-AD 60
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL 195
           +  + K     LHLAA     +VVKLLL
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 142 RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------ 195
           RTP+HLAA NGH  +++LL +   A +  + K     LHLAA     +VVKLLL      
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 196 NKKGIENYNVLHLAAMYSREDVVKLLL 222
           N K       LHLAA     +VVKLLL
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 3   ELLSTQTAEQLKATTINGD--TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           EL  +  A++  AT  + D  TALH A      ++V  L+  G  V+ ++  G + LHIA
Sbjct: 21  ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 80
Query: 61  SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEG-----------Q 109
           ++ G + +VK   G  A  +  +  G      AA  +     +++ EG            
Sbjct: 81  ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA 140
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
           TA+H A+A+G+  ++      KA+ +I D +  TP+HLA +       +LL  +  ASI+
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIY 199
Query: 170 ERTKENYNVLHLA 182
              KE    L +A
Sbjct: 200 IENKEEKTPLQVA 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 121 EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLH 180
           E L +     K+ A+ TD   RT +H A   GH  I+E L  +    + ++    ++ LH
Sbjct: 20  EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLH 78
Query: 181 LAAMYSREDVVKLLLNKKGIEN------YNVLHLAAMYSREDVVKLLL 222
           +AA   R+++VK LL K    N         LH AA  +R ++  +LL
Sbjct: 79  IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 126

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 3   ELLSTQTAEQLKATTINGD--TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           EL  +  A++  AT  + D  TALH A      ++V  L+  G  V+ ++  G + LHIA
Sbjct: 22  ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 81
Query: 61  SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEG-----------Q 109
           ++ G + +VK   G  A  +  +  G      AA  +     +++ EG            
Sbjct: 82  ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA 141
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
           TA+H A+A+G+  ++      KA+ +I D +  TP+HLA +       +LL  +  ASI+
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIY 200
Query: 170 ERTKENYNVLHLA 182
              KE    L +A
Sbjct: 201 IENKEEKTPLQVA 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 121 EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLH 180
           E L +     K+ A+ TD   RT +H A   GH  I+E L  +    + ++    ++ LH
Sbjct: 21  EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLH 79
Query: 181 LAAMYSREDVVKLLLNKKGIEN------YNVLHLAAMYSREDVVKLLL 222
           +AA   R+++VK LL K    N         LH AA  +R ++  +LL
Sbjct: 80  IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 127

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 31/160 (19%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
           AAR    D VRIL+  G  V+  + +G T LH+A++ G   +V+      A+ + +D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
           I                      T LH+A+A G   +V+      A+ +  D+   TP+H
Sbjct: 81  I----------------------TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLH 118
Query: 147 LAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           LAA+ GH  I+E+L          DKF  + F+ + +N N
Sbjct: 119 LAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
           + + DE  +    GA  NA  TD+   TP+HLAA NGH  I+E+L  K  A +       
Sbjct: 24  AGQDDEVRILMANGADVNA--TDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNASDLTG 80
Query: 176 YNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
              LHLAA     ++V++LL      N    + +  LHLAA Y   ++V++LL K G +V
Sbjct: 81  ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL-KHGADV 139
Query: 230 AA 231
            A
Sbjct: 140 NA 141

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
           G+T LHIAS +GD   V+Y     ++ ++ DH   TP+H A  +GH  ++ELL  + +A 
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QHKAL 68
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLLNKKGIEN-YNVLHLAAM-YSREDVVKLLL 222
           +     +N + LH AA     D+VKLLL+     N  N+  L  + Y+ ++ +K LL
Sbjct: 69  VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 72/164 (43%), Gaps = 39/164 (23%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
           AAR    D VRIL+  G  V+  +  G T LH+    G   +++    Y A  NAS    
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDK-- 78
Query: 85  QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDR 142
                                  G T LH+A+  G   +V+    YGA  NA   D+Q  
Sbjct: 79  ----------------------SGWTPLHLAAYRGHLEIVEVLLKYGADVNA--MDYQGY 114
Query: 143 TPMHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           TP+HLAAE+GH  I+E+L          DKF  + F+ + +N N
Sbjct: 115 TPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
           AAR    D VRIL+  G  V+ ++  G+T LH+A+ +G   +V+      A+ +  D   
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM- 79
Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
                                G T LH+A+  G   +V+      A+ + TD    TP+H
Sbjct: 80  ---------------------GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLH 118
Query: 147 LAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           LAA+ GH  I+E+L          DKF  + F+ + +N N
Sbjct: 119 LAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
           + + DE  +    GA  NA   D   +TP+HLAA  GH  I+E+L  K  A +    K  
Sbjct: 24  AGQDDEVRILMANGADVNAE--DDSGKTPLHLAAIKGHLEIVEVLL-KHGADVNAADKMG 80
Query: 176 YNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
              LHLAA+Y   ++V++LL      N      +  LHLAA     ++V++LL K G +V
Sbjct: 81  DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLL-KYGADV 139
Query: 230 AA 231
            A
Sbjct: 140 NA 141

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 35/162 (21%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
           AAR    D VRIL+  G  V+  +  G T LH+A+  G   +V+    YGA  NA     
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN-- 78
Query: 85  QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
                                  G T LH+A+  G   +V+      A+ +  D++  TP
Sbjct: 79  ----------------------YGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTP 116
Query: 145 MHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           +HLAA +GH  I+E+L          DKF  + F+ + +N N
Sbjct: 117 LHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
           + + DE  +    GA  NA  TD    TP+HLAA+ GH  I+E+L  K+ A +       
Sbjct: 24  AGQDDEVRILMANGADVNA--TDWLGHTPLHLAAKTGHLEIVEVLL-KYGADVNAWDNYG 80
Query: 176 YNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
              LHLAA     ++V++LL      N K  E +  LHLAA     ++V++LL K G +V
Sbjct: 81  ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL-KYGADV 139
Query: 230 AA 231
            A
Sbjct: 140 NA 141

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 31/160 (19%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
           AAR    D VRIL+  G  V+ ++  G T LH+A+  G   +V+      A+ +  DH G
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
           +                      T L +A+  G   +V+      A+ +  D +  TP+H
Sbjct: 81  M----------------------TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLH 118
Query: 147 LAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           LAA  GH  I+E+L          DKF  + F+ + +N N
Sbjct: 119 LAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN 158

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 120 DEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVL 179
           DE  +    GA  NA   D    TP+HLAA NGH  I+E+L  K  A +          L
Sbjct: 28  DEVRILMANGADVNAE--DASGWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPL 84
Query: 180 HLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
            LAA++   ++V++LL      N   +E +  LHLAAM+   ++V++LL K G +V A
Sbjct: 85  RLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNA 141

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 35/162 (21%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
           AAR    D VRIL+  G  V+ ++  G T LH+A+  G   +V+      A+ +  D   
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS- 79
Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTP 144
                                G T LH+A+  G   +V+    YGA  NA   D    TP
Sbjct: 80  ---------------------GSTPLHLAAKRGHLEIVEVLLKYGADVNAD--DTIGSTP 116
Query: 145 MHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           +HLAA+ GH  I+E+L          DKF  + F+ + +N N
Sbjct: 117 LHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 31/160 (19%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
           AAR    D VRIL+  G  V+ ++  G T LH+A+  G   +V+      A+ +  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
           +                      T LH+A+  G   +V+      A+ + +D    TP+H
Sbjct: 81  V----------------------TPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLH 118
Query: 147 LAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           LAA+ GH  I+E+L          DKF  + F+ + +N N
Sbjct: 119 LAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN 158

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 31/160 (19%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
           AAR    D VRIL+  G  V+  +  G T LH+A+  G   +V+      A+ +  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
           +                      T LH+A+  G   +V+      A+ +  DH   TP+H
Sbjct: 81  V----------------------TPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLH 118
Query: 147 LAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           LAA  GH  I+E+L          DKF  + F+ + +N N
Sbjct: 119 LAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 22  TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
           TALH A      ++V  L+  G  V+ ++  G + LHIA++ G + +VK      A+ + 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 82  TDHQGIQRDIAAAGTSVLANCLLMGEG-----------QTALHIASAEGDEALVKYFYGA 130
            +  G      AA  +     +++ EG            TA+H A+A+G+  +V      
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
           KA+ +I D +  TP+HLA +       + L  +  ASI+   KE    L +A
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVA 212

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 69/162 (42%), Gaps = 35/162 (21%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
           AAR    D VRIL+  G  V+  +  G T LH+A+  G   +V+      A+    D  G
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTP 144
                                  T LH+A+  G   +V+    YGA  NA   D    TP
Sbjct: 81  F----------------------TPLHLAAMTGHLEIVEVLLKYGADVNA--FDMTGSTP 116
Query: 145 MHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           +HLAA+ GH  I+E+L          DKF  + F+ + +N N
Sbjct: 117 LHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 22  TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
           TALH A      ++V  L+  G  V+ ++  G + LHIA++ G + +VK      A+ + 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 82  TDHQGIQRDIAAAGTSVLANCLLMGEG-----------QTALHIASAEGDEALVKYFYGA 130
            +  G      AA  +     +++ EG            TA+H A+A+G+  +V      
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
           KA+ +I D +  TP+HLA +       + L  +  ASI+   KE    L +A
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVA 212

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
           +G T LH A+  G    VK      A+ +       TP+HLAA+NGHA I++LL  K  A
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-A 66
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLL 194
            +  R+K+     HLA      ++VKLL
Sbjct: 67  DVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 143 TPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------N 196
           TP+H AA+NGHA  ++ L  K  A +  R+K+    LHLAA     ++VKLLL      N
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 197 KKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
            +  +     HLA      ++VK LL+ KG +V A
Sbjct: 70  ARSKDGNTPEHLAKKNGHHEIVK-LLDAKGADVNA 103

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 87/208 (41%), Gaps = 46/208 (22%)
Query: 24  LHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY----------FY 73
           +H+AARK   D VR L++ G S  IQN  G TALH+A   G     KY          ++
Sbjct: 24  IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH 83
Query: 74  GAKA-----NASITD--------------------HQGIQRDIAAAGTSVLANCLLMGEG 108
           G K       A+ TD                    ++  +R++   G+ V  +C    +G
Sbjct: 84  GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHV-KHC----KG 138
Query: 109 QTALHIASAEGDEAL--VKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
           QTALH     G E L  +K      A+ +  D  D TP+  A E  +   ++L  D   +
Sbjct: 139 QTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVPS 198
Query: 167 SIFER----TKENYNVLHLAAMYSREDV 190
               R     K+  + LH A + + EDV
Sbjct: 199 KSSLRLDYANKQGNSHLHWAILINWEDV 226

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 70/162 (43%), Gaps = 35/162 (21%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
           AAR    D VRIL+  G  V+  +  G T LH+A+  G   +V+    +GA  NA     
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI---- 76
Query: 85  QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
                DI                G T LH+A+  G   +V+      A+ +  D    TP
Sbjct: 77  -----DIX---------------GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTP 116
Query: 145 MHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           +HLAA  GH  I+E+L          DKF  + F+ + +N N
Sbjct: 117 LHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
           + + DE  +    GA  NA  TD    TP+HLAA  GH  I+E+L  K  A +       
Sbjct: 24  AGQDDEVRILMANGADVNA--TDASGLTPLHLAATYGHLEIVEVLL-KHGADVNAIDIXG 80
Query: 176 YNVLHLAAMYSREDVVKLLLNKKGIENYNV-------LHLAAMYSREDVVKLLLNKKGIN 228
              LHLAA+    ++V++LL K G +   V       LHLAA+    ++V++LL K G +
Sbjct: 81  STPLHLAALIGHLEIVEVLL-KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL-KHGAD 138
Query: 229 VAA 231
           V A
Sbjct: 139 VNA 141

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 70/162 (43%), Gaps = 35/162 (21%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
           AAR    D VRIL+  G  V+  +  G T LH+A+  G   +V+    +GA  NA     
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI---- 76
Query: 85  QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
                DI                G T LH+A+  G   +V+      A+ +  D    TP
Sbjct: 77  -----DIM---------------GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTP 116
Query: 145 MHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           +HLAA  GH  I+E+L          DKF  + F+ + +N N
Sbjct: 117 LHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
           + + DE  +    GA  NA  TD    TP+HLAA  GH  I+E+L  K  A +       
Sbjct: 24  AGQDDEVRILMANGADVNA--TDASGLTPLHLAATYGHLEIVEVLL-KHGADVNAIDIMG 80
Query: 176 YNVLHLAAMYSREDVVKLLLNKKGIENYNV-------LHLAAMYSREDVVKLLLNKKGIN 228
              LHLAA+    ++V++LL K G +   V       LHLAA+    ++V++LL K G +
Sbjct: 81  STPLHLAALIGHLEIVEVLL-KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL-KHGAD 138
Query: 229 VAA 231
           V A
Sbjct: 139 VNA 141

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
           + + DE  +    GA  NA+  D+   TP+HLAA +GH  I+E+L  K  A +       
Sbjct: 24  AGQDDEVRILMANGADVNAA--DNTGTTPLHLAAYSGHLEIVEVLL-KHGADVDASDVFG 80
Query: 176 YNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
           Y  LHLAA +   ++V++LL      N    +    LHLAA +   ++V++LL K G +V
Sbjct: 81  YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL-KHGADV 139
Query: 230 AA 231
            A
Sbjct: 140 NA 141

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Query: 115 ASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE 174
           A+ + DE  +    GA  NA  TD    TP+HLAA NG   I+E+L  K  A +      
Sbjct: 15  AAGQDDEVRILMANGADVNA--TDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASDSA 71
Query: 175 NYNVLHLAAMYSREDVVKLLLNKKGIE-------NYNVLHLAAMYSREDVVKLLLNKKGI 227
               LHLAA     ++V++LL K G +        +  LHLAA+  + ++V++LL K G 
Sbjct: 72  GITPLHLAAYDGHLEIVEVLL-KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLL-KHGA 129
Query: 228 NVAA 231
           +V A
Sbjct: 130 DVNA 133

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 38/186 (20%)
Query: 17  TINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAK 76
            ++G TALH A    ++DMV+ LV+ G +++  + EG   LH A++ G   + +Y     
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129
Query: 77  ANASITDHQG---------------IQRDIAAAGTSVLA--------------NCLLMG- 106
           A+    + +G               +Q ++   G  + A                L  G 
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 107 --------EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIE 158
                    G TALH+A+A+G   ++K    A+ + +I D+   TP+H AA  G      
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR 249
Query: 159 LLADKF 164
           +L +  
Sbjct: 250 ILVENL 255

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 24/176 (13%)
Query: 22  TALHLAARKRDLDMVRILVDYGTSVDIQNGE-GQTALHIASAEGDEALVKYFYGAKANAS 80
           T LH AA    +D+V+  +  G  VD   G+   T LH A+ +G  ++V       A+ S
Sbjct: 44  TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 81  ITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQ 140
           + D                      GEG + +H+A+  G  ++V Y      +  + D  
Sbjct: 104 LID----------------------GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN 141
Query: 141 DRTPMHLAAENGHASIIELLADKFRASIFERTKENYNV-LHLAAMYSREDVVKLLL 195
             TP+  AA   H+     L   F  S+    K + N  LH A +     V+ LLL
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 109 QTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA-- 166
           QT LH+A       + +   GA  +  + D +  TP+HLA E G  + + +L        
Sbjct: 43  QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 167 --SIFERTKEN-YNVLHLAAMYSREDVVKLLLN-------KKGIENYNVLHLAAMYSRED 216
             SI + T  N +  LHLA+++    +V+LL++       ++       LHLA      D
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 162
Query: 217 VVKLLLNKKGINV 229
           +V LLL K G +V
Sbjct: 163 LVSLLL-KCGADV 174

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
           + + DE  +    GA ANA   DH  RTP+H+AA  GH  I+E+L  +  A +       
Sbjct: 12  AGQDDEVRILMANGADANAY--DHYGRTPLHMAAAVGHLEIVEVLL-RNGADVNAVDTNG 68
Query: 176 YNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
              LHLAA     ++V++LL      N K       L+LAA +   ++V++LL K G +V
Sbjct: 69  TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL-KHGADV 127
Query: 230 AA 231
            A
Sbjct: 128 NA 129

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 22/160 (13%)
Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           ++++L    A  L A   +G T L LAAR     MV  L+     ++  +  G+TALH A
Sbjct: 99  VFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWA 158
Query: 61  SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
           +A  +   V       AN    D +                       +T L +A+ EG 
Sbjct: 159 AAVNNTEAVNILLMHHANRDAQDDKD----------------------ETPLFLAAREGS 196
Query: 121 EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
               K      AN  ITDH DR P  +A+E  H  I+ LL
Sbjct: 197 YEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 109 QTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA-- 166
           QT LH+A       + +   GA  +  + D +  TP+HLA E G  + + +L        
Sbjct: 46  QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 167 --SIFERTKEN-YNVLHLAAMYSREDVVKLLLN-------KKGIENYNVLHLAAMYSRED 216
             SI + T  N +  LHLA+++    +V+LL++       ++       LHLA      D
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 217 VVKLLLNKKGINV 229
           +V LLL K G +V
Sbjct: 166 LVSLLL-KCGADV 177

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 33/177 (18%)
Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMV---RILVDYGTSVDIQNG------ 51
           ++ L ST+    ++    NG TAL + A     D V   ++LV+ G  VD          
Sbjct: 216 VYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275
Query: 52  --EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQ 109
             +G+TALH A+   +  +VKY  G K   S  D Q                     +G+
Sbjct: 276 KYKGRTALHYAAQVSNXPIVKYLVGEKG--SNKDKQD-------------------EDGK 314
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
           T + +A+ EG   +V Y     A+    D  D T   LA  N H +I+++  D+ R 
Sbjct: 315 TPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF-DRCRP 370

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 67/162 (41%), Gaps = 35/162 (21%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY--GAKANASITDH 84
           AAR    D VRIL+  G  V+  +  G T LH+A+  G   +V+     GA  NA  T  
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT-- 78
Query: 85  QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
                                  G T LH+A+  G   +V+      A+ +  D    TP
Sbjct: 79  ----------------------LGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITP 116
Query: 145 MHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
           +HLAA  GH  I+E+L          DKF  + F+ +  N N
Sbjct: 117 LHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGN 158

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 22/176 (12%)
Query: 22  TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
           T L  AA    L+ V+ L+  G  VD ++ EG T LH+A+ +G   +V+Y          
Sbjct: 46  TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG----- 100
Query: 82  TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQD 141
                 Q D+         NC   G G T +  A+      LVK      ++ +I D+++
Sbjct: 101 ------QMDV---------NCQDDG-GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEE 144
Query: 142 RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK 197
              +H AA +G   I E+L    +  +        + LH+AA  +R D V L L++
Sbjct: 145 NICLHWAAFSGCVDIAEILL-AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR 199

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 109 QTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASI 168
           ++ LH A+  G   +      A AN        RTP+  AAEN H   ++ L  K  A +
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-KAGALV 70
Query: 169 FERTKENYNVLHLAAMYSREDVVKLLLNKKGIE-------NYNVLHLAAMYSREDVVKLL 221
             +  E    LHLAA     +VV+ LL+   ++        +  +  A  Y   D+VKLL
Sbjct: 71  DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 222 LNK-KGINV 229
           L+K   IN+
Sbjct: 131 LSKGSDINI 139

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 24/253 (9%)
Query: 17  TINGDTALHLAARKRDLDMVRILVDYGTS---VDIQNGEGQTALHIASAEGDEALVKYFY 73
           T +GDTALHLA   +    +  L+ +      +D+QN  GQTALH+A+  G+ + V+  Y
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 74  GAKANASITDHQG-IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
            A A   + +  G     +A    +    C+L       L    +   +A   Y   ++ 
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVL-------LQPRPSHPRDASDTYLTQSQD 118
Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
               T H    P  + ++    +  E   + +R  +     + +  LH+A ++   ++V+
Sbjct: 119 CTPDTSH---APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175
Query: 193 LL------LNK-KGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA--LGGEDLTGRPDL 243
           LL      LNK +       LHLA       V++LLL K G +  A   GG    G   L
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYGGRTPLGSALL 234
Query: 244 TVGPVQAYLYQVY 256
              P+ A L + +
Sbjct: 235 RPNPILARLLRAH 247

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 24/253 (9%)
Query: 17  TINGDTALHLAARKRDLDMVRILVDYGTS---VDIQNGEGQTALHIASAEGDEALVKYFY 73
           T +GDTALHLA   +    +  L+ +      +D+QN  GQTALH+A+  G+ + V+  Y
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 74  GAKANASITDHQG-IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
            A A   + +  G     +A    +    C+L       L    +   +A   Y   ++ 
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVL-------LQPRPSHPRDASDTYLTQSQD 118
Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
               T H    P  + ++    +  E   + +R  +     + +  LH+A ++   ++V+
Sbjct: 119 CTPDTSH---APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175
Query: 193 LL------LNK-KGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA--LGGEDLTGRPDL 243
           LL      LNK +       LHLA       V++LLL K G +  A   GG    G   L
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYGGRTPLGSALL 234
Query: 244 TVGPVQAYLYQVY 256
              P+ A L + +
Sbjct: 235 RPNPILARLLRAH 247

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFE--RTKENYNVLHLAAMYSREDVVKLL 194
           TD    +P+HLAA+ GH S  E+L    RA +    RTK +   LH+AA     ++V++L
Sbjct: 30  TDWLGTSPLHLAAQYGHFSTTEVL---LRAGVSRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 195 L------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
           L      N K +     LH A  ++ ++VV+LL+ K G +V
Sbjct: 87  LKHGADVNAKDMLKMTALHWATEHNHQEVVELLI-KYGADV 126

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
           AA + DL+ +  L+    +V+ QNG G+TAL +    G+  + +      AN  + D  G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTG 70
Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
                                    +H A+  G    ++     +A+ +I D++   P+H
Sbjct: 71  F----------------------AVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLH 108
Query: 147 LAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
           LAA+ GH  ++E L     +++  R  +      LA +Y R +VV L+
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
           AA + DL+ +  L+    +V+ QNG G+TAL +    G+  + +      AN  + D  G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTG 70
Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
                                    +H A+  G    ++     +A+ +I D++   P+H
Sbjct: 71  F----------------------AVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLH 108
Query: 147 LAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
           LAA+ GH  ++E L     +++  R  +      LA +Y R +VV L+
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
           G + LH A  EG  A+V+      A  ++ +  D TP+HLAA +GH  I++ L  +++A 
Sbjct: 34  GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL-QYKAD 92
Query: 168 IFERTKENYNV-LHLAAMYSREDVVKLLL 195
           I     E+ NV LH A  + ++ V + L+
Sbjct: 93  I-NAVNEHGNVPLHYACFWGQDQVAEDLV 120

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
           G + LH A  EG  A+V+      A  ++ +  D TP+HLAA +GH  I++ L  +++A 
Sbjct: 39  GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL-QYKAD 97
Query: 168 IFERTKENYNV-LHLAAMYSREDVVKLLL 195
           I     E+ NV LH A  + ++ V + L+
Sbjct: 98  I-NAVNEHGNVPLHYACFWGQDQVAEDLV 125

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
           AA + DL+ +  L+    +V+ QNG G+TAL +    G+  + +      AN  + D  G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTG 70
Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
                                    +H A+  G    ++     +A+ +I D++   P+H
Sbjct: 71  F----------------------AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH 108
Query: 147 LAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
           LAA+ GH  ++E L     +++  R  +      LA +Y R +VV L+
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
           G   +H A+  G    ++     +A+ +I D++   P+HLAA+ GH  ++E L     ++
Sbjct: 70  GNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLL 194
           +  R  +      LA +Y R +VV L+
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 108 GQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELL----- 160
           G T LH+A+  G   +V+    +GA  NAS  D   RTP+HLAA  GH  I+E+L     
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADVNAS--DSWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 161 ----ADKFRASIFERTKENYN 177
                DKF  + F+ + +N N
Sbjct: 105 DVNAQDKFGKTAFDISIDNGN 125

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
           AA + DL+ +  L+    +V+ QNG G+TAL +    G+  + +      AN  + D  G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTG 70
Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
                                    +H A+  G    ++     +A+ +I D++   P+H
Sbjct: 71  F----------------------AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH 108
Query: 147 LAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
           LAA+ GH  ++E L     +++  R  +      LA +Y R +VV L+
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 20/197 (10%)
Query: 32  DLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDI 91
           DL+MVR L+++ T  D+++ E   +   A  E    L +    A A          Q+ +
Sbjct: 23  DLEMVRYLLEW-TEEDLEDAEDTVS--AADPEFCHPLCQCPKCAPA----------QKRL 69
Query: 92  AAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAEN 151
           A    S L   +   +G + LH+A+  G   L+       ANA   +     P+HLA + 
Sbjct: 70  AKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQ 129
Query: 152 GHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNV 205
           GH  +++ L D   A   ++       L  A      ++V LLL      N    +    
Sbjct: 130 GHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Query: 206 LHLAAMYSREDVVKLLL 222
           LH A +     VV+LLL
Sbjct: 189 LHEAVIEKHVFVVELLL 205

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 108 GQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELL----- 160
           G T LH+A+  G   +V+    +GA  NAS  D   RTP+HLAA  GH  I+E+L     
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADVNAS--DIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 161 ----ADKFRASIFERTKENYN 177
                DKF  + F+ + +N N
Sbjct: 105 DVNAQDKFGKTAFDISIDNGN 125

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 2   WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIAS 61
            ELL    +  ++ T+  G + +H AAR   LD +++LV++G  V++ +G G   +H+A 
Sbjct: 58  LELLKQGASPNVQDTS--GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 115
Query: 62  AEGDEALVKYFYGAKANASITDHQGI 87
            EG  A+V  F  A+++    D +G+
Sbjct: 116 QEGHTAVVS-FLAAESDLHRRDARGL 140

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSV---DIQNGEGQTALHI 59
           ELL ++ +  L+    +G   LH +   +  ++   L+    +V   D  +  G T  HI
Sbjct: 20  ELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI 78
Query: 60  ASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG 119
           A + G+  +VK  Y       +                      +  +G T LH+A  + 
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNK--------------------ITNQGVTCLHLAVGKK 118
Query: 120 DEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVL 179
              + ++     A+  I D  ++ P+H AA  G   +IELL    ++++  + K+ +  L
Sbjct: 119 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 180 HLAAMYSREDVVKLLLNKKGIE 201
             A      D   LL+ K G E
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAE 200

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 2   WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIAS 61
            ELL    +  ++ T+  G + +H AAR   LD +++LV++G  V++ +G G   +H+A 
Sbjct: 52  LELLKQGASPNVQDTS--GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109
Query: 62  AEGDEALVKYFYGAKANASITDHQGI 87
            EG  A+V  F  A+++    D +G+
Sbjct: 110 QEGHTAVVS-FLAAESDLHRRDARGL 134

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSV---DIQNGEGQTALHI 59
           ELL ++ +  L+    +G   LH +   +  ++   L+    +V   D  +  G T  HI
Sbjct: 20  ELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI 78
Query: 60  ASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG 119
           A + G+  +VK  Y       +                      +  +G T LH+A  + 
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNK--------------------ITNQGVTCLHLAVGKK 118
Query: 120 DEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVL 179
              + ++     A+  I D  ++ P+H AA  G   +IELL    ++++  + K+ +  L
Sbjct: 119 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 180 HLAAMYSREDVVKLLLNKKGIE 201
             A      D   LL+ K G E
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAE 200

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSV---DIQNGEGQTALHI 59
           ELL ++ +  L+    +G   LH +   +  ++   L+    +V   D  +  G T  HI
Sbjct: 20  ELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI 78
Query: 60  ASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG 119
           A + G+  +VK  Y       +                      +  +G T LH+A  + 
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNK--------------------ITNQGVTCLHLAVGKK 118
Query: 120 DEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVL 179
              + ++     A+  I D  ++ P+H AA  G   +IELL    ++++  + K+ +  L
Sbjct: 119 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 180 HLAAMYSREDVVKLLLNKKGIE 201
             A      D   LL+ K G E
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAE 200

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 72/190 (37%), Gaps = 45/190 (23%)
Query: 16  TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
           T   G+TALHLAAR    D  + L++     +IQ+  G+T LH A +   + + +     
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80
Query: 76  KA-NASITDHQGIQRDIAAA------------------------GTSVL----------A 100
           +A +     H G    I AA                        G S L          A
Sbjct: 81  RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 140
Query: 101 NCLLMGEG----------QTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAE 150
             +L+  G          +T L +A+ EG     K      AN  ITDH DR P  +A E
Sbjct: 141 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 200
Query: 151 NGHASIIELL 160
             H  I+ LL
Sbjct: 201 RMHHDIVRLL 210

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
Query: 19  NGDTALHLAARKRDLDMVRILVDYGTS-VDIQNGEGQ-----TALHIASAEGD-EALVKY 71
           NG+TALH +    +  +V+ L+D G   VD QN  G      TAL     + D E +++ 
Sbjct: 110 NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQL 169
Query: 72  FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
           F     NA  +                         GQTAL +A + G   +VK     +
Sbjct: 170 FRLGNINAKASQ-----------------------AGQTALMLAVSHGRVDVVKALLACE 206
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
           A+ ++ D    T +  A E+GH  I  LL       I    ++    L +A    + ++ 
Sbjct: 207 ADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIA 266
Query: 192 KLLLNKKGIE 201
            +L ++  I+
Sbjct: 267 SMLYSRMNIK 276

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL------- 160
           G T LH+A+  G   +V+      A+ +  D   RTP+HLAA  GH  I+E+L       
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 161 --ADKFRASIFERTKENYN 177
              DKF  + F+ + +N N
Sbjct: 107 NAQDKFGKTAFDISIDNGN 125

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           + E+L   T  Q+      G+T L++A    D+++ + L+D G  +++QN    +    A
Sbjct: 21  VKEILQ-DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 61  SAEGDEALVKYFYGAKANASITDHQ--GIQRDIAAAGTSVLANCLLMGE----------- 107
            A+G   ++ Y     A   +  H   G    I AA    + N  L+ E           
Sbjct: 80  GAQGRTEILAYML-KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138
Query: 108 -GQTAL--HIASAEGD---EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLA 161
            G TAL   +   EG+   + +VK      A+ SI D+  RT M  A + G+  I ++LA
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
           + + DE  +    GA  NA+  D +  TP+HLAA+  H  I+E+L  K  A +     + 
Sbjct: 24  AGQDDEVRILMANGADVNAN--DRKGNTPLHLAADYDHLEIVEVLL-KHGADVNAHDNDG 80
Query: 176 YNVLHLAAMYSREDVVKLLL 195
              LHLAA++   ++V++LL
Sbjct: 81  STPLHLAALFGHLEIVEVLL 100

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 71/190 (37%), Gaps = 45/190 (23%)
Query: 16  TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
           T   G+TALHLAAR    D  + L++      IQ+  G+T LH A +   + + +     
Sbjct: 18  TDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRN 77
Query: 76  KA-NASITDHQGIQRDIAAA------------------------GTSVL----------A 100
           +A +     H G    I AA                        G S L          A
Sbjct: 78  RATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 137
Query: 101 NCLLMGEG----------QTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAE 150
             +L+  G          +T L +A+ EG     K      AN  ITDH DR P  +A E
Sbjct: 138 AVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 197
Query: 151 NGHASIIELL 160
             H  I+ LL
Sbjct: 198 RMHHDIVRLL 207

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 89  RDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLA 148
           R + A G  V AN      G T LH+A+  G   +V+      A+ + T +  RTP+HLA
Sbjct: 31  RILTANGADVNANDYW---GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLA 87
Query: 149 AENGHASIIELL---------ADKFRASIFERTKENYN 177
           A   H  I+E+L          DKF  + F+ + +N N
Sbjct: 88  AWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
          A   NG T LHLAAR   L++V++L++ G  V+ Q+  G+TA  I+   G+E L +  
Sbjct: 34 AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 22/160 (13%)
Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           ++++L    A  L A   +G T L LAAR     M+  L++    V+  +  G++ALH A
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 164
Query: 61  SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
           +A  +           AN  + +++                       +T L +A+ EG 
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNRE----------------------ETPLFLAAREGS 202
Query: 121 EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
               K      AN  ITDH DR P  +A E  H  I+ LL
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 22/160 (13%)
Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           ++++L    A  L A   +G T L LAAR     M+  L++    V+  +  G++ALH A
Sbjct: 106 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 165
Query: 61  SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
           +A  +           AN  + +++                       +T L +A+ EG 
Sbjct: 166 AAVNNVDAAVVLLKNGANKDMQNNRE----------------------ETPLFLAAREGS 203
Query: 121 EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
               K      AN  ITDH DR P  +A E  H  I+ LL
Sbjct: 204 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 243

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 22/160 (13%)
Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           ++++L    A  L A   +G T L LAAR     M+  L++    V+  +  G++ALH A
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 164
Query: 61  SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
           +A  +           AN  + +++                       +T L +A+ EG 
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNRE----------------------ETPLFLAAREGS 202
Query: 121 EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
               K      AN  ITDH DR P  +A E  H  I+ LL
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
           + + DE  +    GA  NA   D    TP+HLAA+ GH  I+E+L  K+ A +    ++N
Sbjct: 24  AGQDDEVRILMANGADVNA--LDEDGLTPLHLAAQLGHLEIVEVLL-KYGADV--NAEDN 78
Query: 176 YNV--LHLAAMYSREDVVKLLL 195
           + +  LHLAA+    ++V++LL
Sbjct: 79  FGITPLHLAAIRGHLEIVEVLL 100

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
           A   NG T LHLAAR   L++V++L++ G  V  Q+  G+TA  I+   G+E L +  
Sbjct: 52  AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-41
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-38
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-36
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-32
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-40
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-38
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-29
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-26
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-40
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-40
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-37
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-40
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-26
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-40
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-40
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-22
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-39
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-39
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-37
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-39
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-38
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-35
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-38
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-37
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-33
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-37
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-37
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-36
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-35
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-30
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-28
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-34
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-27
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-19
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-32
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-32
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-25
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-31
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-27
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-31
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-14
2rfa_A	232	Transient receptor potential cation channel subfa	2e-30
2rfa_A	232	Transient receptor potential cation channel subfa	1e-27
2rfa_A	232	Transient receptor potential cation channel subfa	1e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-30
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-29
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-30
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-29
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-29
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-27
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-23
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-18
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-26
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-27
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-22
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-27
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-07
2pnn_A	273	Transient receptor potential cation channel subfa	4e-27
2pnn_A	273	Transient receptor potential cation channel subfa	1e-25
2pnn_A	273	Transient receptor potential cation channel subfa	1e-17
2pnn_A	273	Transient receptor potential cation channel subfa	4e-09
2pnn_A	273	Transient receptor potential cation channel subfa	5e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-27
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-23
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-26
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-23
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-22
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-16
2etb_A	256	Transient receptor potential cation channel subfam	6e-24
2etb_A	256	Transient receptor potential cation channel subfam	7e-19
2etb_A	256	Transient receptor potential cation channel subfam	9e-12
2etb_A	256	Transient receptor potential cation channel subfam	2e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-23
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-22
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-19
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-21
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  157 bits (399), Expect = 6e-45
 Identities = 64/221 (28%), Positives = 98/221 (44%), Gaps = 30/221 (13%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
               +G T LH+A+    L +V+ L+  G S ++ N + +T LH+A+  G   + KY   
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
            KA  +                          + QT LH A+  G   +VK      AN 
Sbjct: 69  NKAKVNAKAK----------------------DDQTPLHCAARIGHTNMVKLLLENNANP 106

Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
           ++      TP+H+AA  GH   +  L +K  AS    TK+ +  LH+AA Y +  V +LL
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRVAELL 165

Query: 195 L------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
           L      N  G      LH+A  ++  D+VKLLL  +G + 
Sbjct: 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL-PRGGSP 205

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  156 bits (398), Expect = 9e-45
 Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 30/221 (13%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
            + +  +T LH+AAR    ++ + L+     V+ +  + QT LH A+  G   +VK    
Sbjct: 42  VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
             AN ++                          G T LHIA+ EG    V      +A+ 
Sbjct: 102 NNANPNLATT----------------------AGHTPLHIAAREGHVETVLALLEKEASQ 139

Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
           +    +  TP+H+AA+ G   + ELL ++  A      K     LH+A  ++  D+VKLL
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

Query: 195 L------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
           L      +      Y  LH+AA  ++ +V + LL   G + 
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSA 238

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  152 bits (387), Expect = 4e-43
 Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 34/223 (15%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
           A   NG T LH+A    +LD+V++L+  G S       G T LHIA+ +    + +    
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233

Query: 73  YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
           YG  ANA           +               +G T LH+A+ EG   +V      +A
Sbjct: 234 YGGSANA---------ESV---------------QGVTPLHLAAQEGHAEMVALLLSKQA 269

Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
           N ++ +    TP+HL A+ GH  + ++L       +   T+  Y  LH+A+ Y    +VK
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVK 328

Query: 193 LLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
            LL      N K    Y+ LH AA     D+V LLL   G + 
Sbjct: 329 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASP 370

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  148 bits (376), Expect = 1e-41
 Identities = 54/225 (24%), Positives = 93/225 (41%), Gaps = 31/225 (13%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
           +   NG T LH+AA++  +++ R L+ YG S + ++ +G T LH+A+ EG   +V     
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
            +AN ++ +                        G T LH+ + EG   +           
Sbjct: 267 KQANGNLGNK----------------------SGLTPLHLVAQEGHVPVADVLIKHGVMV 304

Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
             T     TP+H+A+  G+  +++ L    +A +  +TK  Y+ LH AA     D+V LL
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363

Query: 195 L------NKKGIENYNVLHLAAMYSREDVVKLLLN--KKGINVAA 231
           L      N+   +    L +A       V  +L     +   V  
Sbjct: 364 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLV 408

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  125 bits (317), Expect = 4e-33
 Identities = 53/202 (26%), Positives = 84/202 (41%), Gaps = 30/202 (14%)

Query: 43  GTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANC 102
           G S       G T LH+AS  G   +VK      A+ ++++                   
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV------------------ 45

Query: 103 LLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLAD 162
               + +T LH+A+  G   + KY    KA  +     D+TP+H AA  GH ++++LL +
Sbjct: 46  ----KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101

Query: 163 KFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSRED 216
              A+    T   +  LH+AA     + V  LL           + +  LH+AA Y +  
Sbjct: 102 N-NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160

Query: 217 VVKLLLNKKGINVAALGGEDLT 238
           V +LLL  +  +  A G   LT
Sbjct: 161 VAELLLE-RDAHPNAAGKNGLT 181

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 85.2 bits (212), Expect = 8e-19
 Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 25/139 (17%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
           ATT  G T LH+A+   ++ +V+ L+ +   V+ +   G + LH A+ +G   +V     
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
             A+ +                          +G T L IA   G  ++           
Sbjct: 366 NGASPNEVSS----------------------DGTTPLAIAKRLGYISVTDVLKVVTDET 403

Query: 135 SITDHQD---RTPMHLAAE 150
           S     D    +      E
Sbjct: 404 SFVLVSDKHRMSFPETVDE 422

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  139 bits (354), Expect = 3e-40
 Identities = 61/224 (27%), Positives = 92/224 (41%), Gaps = 33/224 (14%)

Query: 14  KATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY 73
           K    N  + LH AA    +D+  +LV  G ++D  + + +T L  A+       VKY  
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 74  GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAK 131
            A A     D                       EG T LH+A+ +G   +V+Y    G  
Sbjct: 65  KAGALVDPKDA----------------------EGSTCLHLAAKKGHYEVVQYLLSNGQ- 101

Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
            + +  D    TPM  A E  H  +++LL  K  + I  R  E    LH AA     D+ 
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIA 160

Query: 192 KLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
           ++LL      +   I   + LH+AA  +R D V L L+ +  +V
Sbjct: 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDV 203

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  133 bits (337), Expect = 8e-38
 Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 29/222 (13%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
             + +  T L  AA    L+ V+ L+  G  VD ++ EG T LH+A+ +G   +V+Y   
Sbjct: 39  TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS 98

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
                          D+                G T +  A+      LVK      ++ 
Sbjct: 99  NGQ-----------MDVNCQDD----------GGWTPMIWATEYKHVDLVKLLLSKGSDI 137

Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
           +I D+++   +H AA +G   I E+L    +  +        + LH+AA  +R D V L 
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEILLAA-KCDLHAVNIHGDSPLHIAARENRYDCVVLF 196

Query: 195 L------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVA 230
           L        K  E    L  A++ S+      +  K   + A
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS-KALQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  111 bits (281), Expect = 1e-29
 Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 29/190 (15%)

Query: 46  VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLM 105
             +++   ++ LH A+  G   +      A AN                           
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE--------------------- 42

Query: 106 GEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFR 165
            + +T L  A+       VKY   A A     D +  T +HLAA+ GH  +++ L    +
Sbjct: 43  -DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101

Query: 166 ASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVK 219
             +  +    +  +  A  Y   D+VKLLL      N +  E    LH AA     D+ +
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161

Query: 220 LLLNKKGINV 229
           +LL     ++
Sbjct: 162 ILLA-AKCDL 170

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  103 bits (259), Expect = 2e-26
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 22/158 (13%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           + L +     +      G T +  A   + +D+V++L+  G+ ++I++ E    LH A+ 
Sbjct: 94  QYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAF 153

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
            G   + +    AK +    +                        G + LHIA+ E    
Sbjct: 154 SGCVDIAEILLAAKCDLHAVNI----------------------HGDSPLHIAARENRYD 191

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
            V  F    ++ ++ + +  TP+  A+ N        +
Sbjct: 192 CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.0 bits (183), Expect = 1e-15
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
            N  +     R+P+H AAE GH  I  +L     A+I   +++    L  AA  +  + V
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 192 KLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
           K L+      + K  E    LHLAA     +VV+ LL+   ++V
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  139 bits (353), Expect = 7e-40
 Identities = 47/237 (19%), Positives = 85/237 (35%), Gaps = 33/237 (13%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           +      Q A     T   G+TALHLAAR    D  + L++     +IQ+  G+T LH A
Sbjct: 38  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97

Query: 61  SAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE 118
            +   + + +      A  +     H                      +G T L +A+  
Sbjct: 98  VSADAQGVFQILIRNRA-TDLDARMH----------------------DGTTPLILAARL 134

Query: 119 GDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNV 178
             E +++    + A+ +  D   ++ +H AA   +     +L     A+   +       
Sbjct: 135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETP 193

Query: 179 LHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKG-IN 228
           L LAA     +  K+LL      +     +     +A      D+V+LL  +    +
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  116 bits (293), Expect = 4e-31
 Identities = 41/194 (21%), Positives = 73/194 (37%), Gaps = 29/194 (14%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYG-TSVDIQNGEGQTALHIASAEGDEALVKYF- 72
                G T LH A       + +IL+    T +D +  +G T L +A+    E +++   
Sbjct: 85  IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 144

Query: 73  -YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
              A  NA          D                 G++ALH A+A  +           
Sbjct: 145 NSHADVNA---------VDD---------------LGKSALHWAAAVNNVDAAVVLLKNG 180

Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
           AN  + ++++ TP+ LAA  G     ++L D F A+       +     +A      D+V
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIV 239

Query: 192 KLLLNKKG-IENYN 204
           +LL  +     +++
Sbjct: 240 RLLDLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  109 bits (274), Expect = 2e-28
 Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 21/193 (10%)

Query: 46  VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDH---QGIQRDIAAAGTSVLANC 102
           V+++  +G T L IAS  G           +   ++      QG    +           
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA--SLHNQTDR----- 55

Query: 103 LLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLAD 162
                G+TALH+A+        K    A A+A+I D+  RTP+H A       + ++L  
Sbjct: 56  ----TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111

Query: 163 KFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSRED 216
                +  R  +    L LAA  + E +++ L+      N       + LH AA  +  D
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 171

Query: 217 VVKLLLNKKGINV 229
              +LL K G N 
Sbjct: 172 AAVVLL-KNGANK 183

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  140 bits (355), Expect = 7e-40
 Identities = 48/226 (21%), Positives = 77/226 (34%), Gaps = 38/226 (16%)

Query: 13  LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
           L    ++  + +H AA       +R L+  G +V+I   +  + LH A   G  + VK  
Sbjct: 52  LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111

Query: 73  --YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--Y 128
             +GA+ N    D                          T L  A   G    V     +
Sbjct: 112 LKHGAQVNGVTAD------------------------WHTPLFNACVSGSWDCVNLLLQH 147

Query: 129 GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRE 188
           GA       +    +P+H AA  GH   +  L      +I  +       L+LA    + 
Sbjct: 148 GASVQP---ESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQR 203

Query: 189 DVVKLLLNK-----KGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
             VK LL       +G    + LH     + E++  LL+   G + 
Sbjct: 204 ACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLM-DFGADT 248

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  133 bits (338), Expect = 2e-37
 Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 37/223 (16%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
             T +  + LH A     L  V+IL+ +G  V+    +  T L  A   G    V     
Sbjct: 87  IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ 146

Query: 73  YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
           +GA                               +  + +H A+  G    V        
Sbjct: 147 HGASVQPE-------------------------SDLASPIHEAARRGHVECVNSLIAYGG 181

Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
           N         TP++LA EN   + ++ L +   A +  + K   + LH     + E++  
Sbjct: 182 NIDHKISHLGTPLYLACENQQRACVKKLLES-GADV-NQGKGQDSPLHAVVRTASEELAC 239

Query: 193 LLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
           LL+        K  E    + L    S    +   L ++G ++
Sbjct: 240 LLMDFGADTQAKNAEGKRPVELVPPESPLAQL--FLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  114 bits (289), Expect = 3e-30
 Identities = 36/222 (16%), Positives = 65/222 (29%), Gaps = 38/222 (17%)

Query: 14  KATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY 73
           K   ++G              +          +        + +H A+  G +  ++   
Sbjct: 27  KQGGMDGSKPAGPRDFPGIRLLSN-------PLMGDAVSDWSPMHEAAIHGHQLSLRNLI 79

Query: 74  GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
                 +I                         +  + LH A   G  + VK      A 
Sbjct: 80  SQGWAVNIITA----------------------DHVSPLHEACLGGHLSCVKILLKHGAQ 117

Query: 134 ASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKL 193
            +       TP+  A  +G    + LL     AS+ +   +  + +H AA     + V  
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASV-QPESDLASPIHEAARRGHVECVNS 175

Query: 194 LL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
           L+      + K       L+LA    +   VK LL   G +V
Sbjct: 176 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-SGADV 216

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 64.8 bits (159), Expect = 3e-12
 Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 114 IASAEGDEALVKYF--YGAKANA---SITDHQDRTPMHLAAENGHASIIELLADKFRASI 168
           + S+             G+   +            P       G      LL++     +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI----RLLSN----PL 52

Query: 169 FERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLL 222
                 +++ +H AA++  +  ++ L+      N    ++ + LH A +      VK+LL
Sbjct: 53  MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112

Query: 223 NKKGINV 229
            K G  V
Sbjct: 113 -KHGAQV 118

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  139 bits (354), Expect = 8e-40
 Identities = 46/227 (20%), Positives = 69/227 (30%), Gaps = 27/227 (11%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
                G TALHLAA   +   V  L   G  V +    G TALH+A              
Sbjct: 40  LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99

Query: 73  YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF---YG 129
                    +D    Q       T                 + S    E   +     + 
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDT-----------SHAPAAVDSQPNPENEEEPRDEDWR 148

Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN-YNVLHLAAMYSRE 188
            +  A   ++   TP+H+A  +  A ++ LL D   A + +         LHLA      
Sbjct: 149 LQLEA--ENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAA 205

Query: 189 DVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
            V++LLL        +       L  A +     + +LL    G   
Sbjct: 206 SVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA-HGAPE 251

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  128 bits (324), Expect = 2e-35
 Identities = 55/243 (22%), Positives = 85/243 (34%), Gaps = 48/243 (19%)

Query: 13  LKATTINGDTALHLAARKRDLDMVRILVDYG---TSVDIQNGEGQTALHIASAEGDEALV 69
               T +GDTALHLA   +    +  L+ +      +D+QN  GQTALH+A+  G+ + V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 70  KYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF-- 127
           +  Y A A   + +                        G TALH+A              
Sbjct: 62  EKLYAAGAGVLVAER----------------------GGHTALHLACRVRAHTCACVLLQ 99

Query: 128 YGAKANASITD-----------HQDRTPMHLAA-ENGHASIIELLADKFRASIFERTKEN 175
                    +D                P  + +  N          D  R  +     + 
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW-RLQLEAENYDG 158

Query: 176 YNVLHLAAMYSREDVVKLLL------NKKGIEN-YNVLHLAAMYSREDVVKLLLNKKGIN 228
           +  LH+A ++   ++V+LL       NK         LHLA       V++LLL K G +
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGAD 217

Query: 229 VAA 231
             A
Sbjct: 218 PTA 220

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  102 bits (257), Expect = 9e-26
 Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 27/191 (14%)

Query: 9   TAEQLKATTINGDTALHLAARKR-DLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA 67
             +    T         + ++   + +      D+   ++ +N +G T LH+A    D  
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172

Query: 68  LVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK 125
           +V+     GA  N                             G+T LH+A      ++++
Sbjct: 173 MVRLLRDAGADLNKPEPTC-----------------------GRTPLHLAVEAQAASVLE 209

Query: 126 YFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMY 185
               A A+ +   +  RTP+  A    +  +  LL     A   E   +  +    +   
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSSGSD 268

Query: 186 SREDVVKLLLN 196
           S  D       
Sbjct: 269 SDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 69.5 bits (171), Expect = 6e-14
 Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 26/112 (23%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
            G T LHLA   +   ++ +L+  G     +   G+T L  A    +  L +      A 
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD----EALVKY 126
                                       +  +    + ++ D    +   +Y
Sbjct: 251 EPEDGG----------------------DKLSPCSSSGSDSDSDNRDEGDEY 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 60.6 bits (148), Expect = 7e-11
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGD----EALVK 70
           A    G T L  A  + +  + R+L  +G       G+  +    + ++ D    +   +
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

Query: 71  Y 71
           Y
Sbjct: 280 Y 280

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  138 bits (350), Expect = 9e-40
 Identities = 43/220 (19%), Positives = 80/220 (36%), Gaps = 30/220 (13%)

Query: 20  GDTALHLAARKRDLDMVR-ILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
            +  LH A  + +   V+ +L    + +  ++ +G+  LH + +     +  +      N
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASI 136
            ++ D+                       G T  HIA + G+  +VK       K + + 
Sbjct: 62  VNLDDYPD-------------------DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK 102

Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL- 195
             +Q  T +HLA       + + L +   AS+  + K N   LH AA      +++LL  
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161

Query: 196 ------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
                 N +  + +  L  A      D   LL+ K G   
Sbjct: 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  135 bits (342), Expect = 1e-38
 Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 40/236 (16%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNG---EGQTAL 57
           + ELL ++ +  L     +G   LH +   +  ++   L+    +V++ +     G T  
Sbjct: 18  VQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 76

Query: 58  HIASAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIA 115
           HIA + G+  +VK       K + +   +                      +G T LH+A
Sbjct: 77  HIACSVGNLEVVKSLYDRPLKPDLNKITN----------------------QGVTCLHLA 114

Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
             +    + ++     A+  I D  ++ P+H AA  G   +IELL    ++++  + K+ 
Sbjct: 115 VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174

Query: 176 YNVLHLAAMYSREDVVKLLLNKKGIENYNV--------LHLAAMYSREDVVKLLLN 223
           +  L  A      D   LL+ K G   Y++          +A     E V K  LN
Sbjct: 175 WTPLFHALAEGHGDAAVLLVEKYGA-EYDLVDNKGAKAEDVAL---NEQVKKFFLN 226

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  139 bits (354), Expect = 9e-40
 Identities = 55/233 (23%), Positives = 84/233 (36%), Gaps = 46/233 (19%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
            G T LH A +    D+V +L+ +G    ++   G T   +A+  G   L+K F   GA 
Sbjct: 38  GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANA 134
            N                             G TA   A+  G    +K+    GA  N 
Sbjct: 98  VNECDFY------------------------GFTAFMEAAVYGKVKALKFLYKRGANVNL 133

Query: 135 SITDHQD--------RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS 186
                +D         T +  AAE GH  ++++L D+  A +        N L  A + S
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193

Query: 187 R----EDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
                E +  LLL      N +G      L LA       +V+ LL ++ I +
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  136 bits (345), Expect = 2e-38
 Identities = 51/229 (22%), Positives = 83/229 (36%), Gaps = 30/229 (13%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
               NG T   LAA    + ++++ +  G  V+  +  G TA   A+  G    +K+ Y 
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF---YGAK 131
             AN ++       ++                 G TAL  A+ +G   ++K      GA 
Sbjct: 127 RGANVNLRRKTKEDQERLRK------------GGATALMDAAEKGHVEVLKILLDEMGAD 174

Query: 132 ANASITDHQDRTPMHLAAENGHAS----IIELLADKFRASIFERTKENYNVLHLAAMYSR 187
            NA   D+  R  +  A  +   S    I  LL D   A +  R +     L LA     
Sbjct: 175 VNA--CDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKH 231

Query: 188 EDVVKLLL-------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
             +V+ LL       N    +    L LA     + + +LL   +G + 
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGAST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  131 bits (332), Expect = 2e-36
 Identities = 53/236 (22%), Positives = 84/236 (35%), Gaps = 48/236 (20%)

Query: 17  TINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGE-GQTALHIASAEGDEALVKYF--Y 73
            +  +  L  A +  D+D+V+ L++ G +V+ Q  E G T LH A     E +V+    +
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 74  GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
           GA       +                        G T   +A+  G   L+K F    A+
Sbjct: 62  GADPVLRKKN------------------------GATPFLLAAIAGSVKLLKLFLSKGAD 97

Query: 134 ASITDHQDRTPMHLAAENGHASIIELL---------ADKFRASIFERTKENYNVLHLAAM 184
            +  D    T    AA  G    ++ L           K +       K     L  AA 
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157

Query: 185 YSREDVVKLLLNKKGI-------ENYNVLHLAAMYSR----EDVVKLLLNKKGINV 229
               +V+K+LL++ G           N L  A + S     E +  LLL+  G +V
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADV 212

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 92.1 bits (230), Expect = 6e-22
 Identities = 41/160 (25%), Positives = 60/160 (37%), Gaps = 36/160 (22%)

Query: 11  EQLKATTINGDTALHLAARKRDLDMVRILVD-YGTSVDIQNGEGQTALHIASAEGD---- 65
           E  +     G TAL  AA K  +++++IL+D  G  V+  +  G+ AL  A    D    
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198

Query: 66  EALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEAL 123
           EA+      +GA  N          R                  G+T L +A  +    L
Sbjct: 199 EAITHLLLDHGADVNV---------RGE---------------RGKTPLILAVEKKHLGL 234

Query: 124 VKYF---YGAKANASITDHQDRTPMHLAAENGHASIIELL 160
           V+        + N   TD   +T + LA E     I ELL
Sbjct: 235 VQRLLEQEHIEIND--TDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.0 bits (175), Expect = 2e-14
 Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 34/140 (24%)

Query: 4   LLSTQTAEQLKATTINGDTALHLAARK----RDLDMVRILVDYGTSVDIQNGEGQTALHI 59
           LL    A+ + A    G  AL  A           +  +L+D+G  V+++   G+T L +
Sbjct: 167 LLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225

Query: 60  ASAEGDEALVKYF---YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIAS 116
           A  +    LV+        + N   TD                       +G+TAL +A 
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEIND--TDS----------------------DGKTALLLAV 261

Query: 117 AEGDEALVKYF--YGAKANA 134
               + + +     GA  + 
Sbjct: 262 ELKLKKIAELLCKRGASTDC 281

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 4   LLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQN 50
           LL  +  E +  T  +G TAL LA   +   +  +L   G S D  +
Sbjct: 238 LLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  137 bits (348), Expect = 1e-39
 Identities = 36/235 (15%), Positives = 69/235 (29%), Gaps = 34/235 (14%)

Query: 10  AEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALV 69
           ++        G   +  A    +      L      +        T     +++G   L+
Sbjct: 2   SKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI 61

Query: 70  KYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG 129
              Y A+                                   LH A+  G+ + ++    
Sbjct: 62  PSNYVAEQA---------------------------ESIDNPLHEAAKRGNLSWLRECLD 94

Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRED 189
            +   +  D    T ++ A   GH  I+E+L  +    + ++ K     LH AA     D
Sbjct: 95  NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYAD 154

Query: 190 VVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLT 238
           +V+LLL      + + IE      +A   +   ++K               ED  
Sbjct: 155 IVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAEDYL 208

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 92.3 bits (230), Expect = 2e-22
 Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 23/140 (16%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVD-YGTSVDIQNGEGQTALHIASAEGDEALVKYFY 73
                G TAL+ A      D+V +L       ++ QN  G TALH A+ +G   +V+   
Sbjct: 101 GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160

Query: 74  GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
              A   + +                       E + A  +A+     +L+K   G  A 
Sbjct: 161 AKGARTDLRNI----------------------EKKLAFDMATNAACASLLKKKQGTDAV 198

Query: 134 ASITDHQDRTPMHLAAENGH 153
            ++++ +D      +    H
Sbjct: 199 RTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 74.2 bits (183), Expect = 6e-16
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 22/117 (18%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           E+L TQ   +L      GDTALH AA K   D+V++L+  G   D++N E + A  +A+ 
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG 119
               +L+K   G  A  ++++                       E       +  E 
Sbjct: 183 AACASLLKKKQGTDAVRTLSNA----------------------EDYLDDEDSDLEH 217

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  136 bits (345), Expect = 6e-39
 Identities = 47/219 (21%), Positives = 80/219 (36%), Gaps = 30/219 (13%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
                  T LHLA       +VR+LV  G S    +  GQTA H+A        ++    
Sbjct: 41  IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD 100

Query: 73  YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
             A     +       R+                +G TALH+A     +  V+      A
Sbjct: 101 SAAPGTLDLEA-----RNY---------------DGLTALHVAVNTECQETVQLLLERGA 140

Query: 133 NASITDHQD-RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
           +    D +  R+P+  A EN   S+++LL     A++  +     + LH A+      +V
Sbjct: 141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLV 199

Query: 192 KLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNK 224
           + L+      + K   N   L +A      D+++    +
Sbjct: 200 RTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  131 bits (333), Expect = 4e-37
 Identities = 50/230 (21%), Positives = 87/230 (37%), Gaps = 39/230 (16%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDY----GTSVDIQNGEGQTALHIASAEGDEALVK 70
               +GDT LH+A  + +L  V  LV+     G  +DI N   QT LH+A      ++V+
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63

Query: 71  YFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--Y 128
               A A+    D                        GQTA H+A        ++     
Sbjct: 64  LLVTAGASPMALDR----------------------HGQTAAHLACEHRSPTCLRALLDS 101

Query: 129 GAKANASI--TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN-YNVLHLAAMY 185
            A     +   ++   T +H+A        ++LL ++  A I     ++  + L  A   
Sbjct: 102 AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVEN 160

Query: 186 SREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
           +   +V+LLL      N +     + LH A+      +V+ L+ + G + 
Sbjct: 161 NSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV-RSGADS 209

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  105 bits (266), Expect = 2e-27
 Identities = 45/198 (22%), Positives = 74/198 (37%), Gaps = 37/198 (18%)

Query: 46  VDIQNGEGQTALHIASAEGD----EALVKYFYGAKANASITDHQGIQRDIAAAGTSVLAN 101
               + +G T LHIA  +G+      LV  F        I ++                 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN----------------- 44

Query: 102 CLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLA 161
                  QT LH+A      ++V+    A A+    D   +T  HLA E+   + +  L 
Sbjct: 45  -----LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALL 99

Query: 162 DK---FRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIEN-YNVLHLAAM 211
           D        +  R  +    LH+A     ++ V+LLL      +   I++  + L  A  
Sbjct: 100 DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159

Query: 212 YSREDVVKLLLNKKGINV 229
            +   +V+LLL + G NV
Sbjct: 160 NNSLSMVQLLL-QHGANV 176

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 73.6 bits (182), Expect = 2e-15
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 22/115 (19%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
           +G + L  A     L MV++L+ +G +V+ Q   G +ALH AS  G   LV+    + A+
Sbjct: 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
           +S+ +                          T L +A +     +++      A+
Sbjct: 209 SSLKNC----------------------HNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 63.2 bits (155), Expect = 6e-12
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
           A   +G +ALH A+ +  L +VR LV  G    ++N    T L +A +     +++    
Sbjct: 178 AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKAT 237

Query: 75  AKAN 78
             A+
Sbjct: 238 RPAS 241

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  135 bits (343), Expect = 8e-39
 Identities = 53/244 (21%), Positives = 87/244 (35%), Gaps = 36/244 (14%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           +      Q A     T   G+TALHLAAR    D  + L++     +IQ+  G+T LH A
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65

Query: 61  SAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE 118
            +   + + +      A              D+ A           M +G T L +A+  
Sbjct: 66  VSADAQGVFQILIRNRAT-------------DLDAR----------MHDGTTPLILAARL 102

Query: 119 GDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENY 176
             E +++      A  NA   D   ++ +H AA   +     +L     A+   +     
Sbjct: 103 AVEGMLEDLINSHADVNA--VDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREE 159

Query: 177 NVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVA 230
             L LAA     +  K+LL      +     +     +A      D+V+LL     +   
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219

Query: 231 ALGG 234
            L G
Sbjct: 220 QLHG 223

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  135 bits (342), Expect = 5e-38
 Identities = 41/212 (19%), Positives = 76/212 (35%), Gaps = 26/212 (12%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
             +  LH AA   D  +V+IL+  G      + +G TAL+ A   G+   VK F      
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR 120

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
                  G                      +T+ + A    D ++V YF     + +   
Sbjct: 121 LMFYGKTG---------------------WKTSFYHAVMLNDVSIVSYFLSEIPS-TFDL 158

Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENY-NVLHLAAMYSREDVVKLLLNK 197
               + +H+  +NGH  ++ LL D    S        +   + LA      ++++ L  K
Sbjct: 159 AILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF-K 216

Query: 198 KGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
             I  Y+      +    ++ K+++  K +  
Sbjct: 217 YDINIYSANLENVLLDDAEIAKMIIE-KHVEY 247

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  128 bits (325), Expect = 2e-35
 Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 37/224 (16%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
              ++G +A + A    ++ +V  L++ G   ++     +  LH A+   D  +VK    
Sbjct: 26  KADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLF 83

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKA 132
           +  + S  D                       +G TAL+ A   G+   VK F     + 
Sbjct: 84  SGLDDSQFDD----------------------KGNTALYYAVDSGNMQTVKLFVKKNWRL 121

Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
                    +T  + A      SI+     +   S         + +H+       D++ 
Sbjct: 122 MFY-GKTGWKTSFYHAVMLNDVSIVSYFLSE-IPST-FDLAILLSCIHITIKNGHVDMMI 178

Query: 193 LLL------NKKGIENY-NVLHLAAMYSREDVVKLLLNKKGINV 229
           LLL      N      +   + LA      ++++ L  K  IN+
Sbjct: 179 LLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF-KYDINI 221

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  114 bits (287), Expect = 5e-30
 Identities = 31/210 (14%), Positives = 67/210 (31%), Gaps = 33/210 (15%)

Query: 26  LAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQ 85
                     ++  +         +  G +A + A A+ +  LV     A A  ++ +  
Sbjct: 5   SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE-- 61

Query: 86  GIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPM 145
                                  +  LH A+   D  +VK    +  + S  D +  T +
Sbjct: 62  ----------------------NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL 99

Query: 146 HLAAENGHASIIELLADKFRASIFERTKENYN-VLHLAAMYSREDVVKLLL-----NKKG 199
           + A ++G+   ++L   K    +    K  +    + A M +   +V   L         
Sbjct: 100 YYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL 158

Query: 200 IENYNVLHLAAMYSREDVVKLLLNKKGINV 229
               + +H+       D++ LLL+    + 
Sbjct: 159 AILLSCIHITIKNGHVDMMILLLD-YMTST 187

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  106 bits (266), Expect = 6e-27
 Identities = 27/226 (11%), Positives = 63/226 (27%), Gaps = 43/226 (19%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEG-QTALHIASAEGDEALVKYF- 72
                G+TAL+ A    ++  V++ V     +      G +T+ + A    D ++V YF 
Sbjct: 90  QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149

Query: 73  -YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
                +   +                            + +HI    G   ++       
Sbjct: 150 SEIP-STFDLAI------------------------LLSCIHITIKNGHVDMMILLLDYM 184

Query: 132 ANASITDHQDRTP-MHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV 190
            + +  +     P + LA +N    +++ L      +I       Y+      +    ++
Sbjct: 185 TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-DINI-------YSANLENVLLDDAEI 236

Query: 191 VKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVA 230
            K+++                +               L    +N  
Sbjct: 237 AKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCV 282

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 80.3 bits (199), Expect = 1e-17
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 13/128 (10%)

Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
           G     I +       +K F  +  +    D    +  + A  + +  ++  L +   A 
Sbjct: 1   GMDLSRINT--WKSKQLKSF-LSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNA-GAL 56

Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
                 EN   LH AA      +VK+LL      ++   +    L+ A        VKL 
Sbjct: 57  K--NLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLF 114

Query: 222 LNKKGINV 229
           + KK   +
Sbjct: 115 V-KKNWRL 121

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  134 bits (339), Expect = 6e-38
 Identities = 55/221 (24%), Positives = 83/221 (37%), Gaps = 35/221 (15%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
                +  A +    +  R LV+ G  V   + E  T LH A+      LVKY+   GA 
Sbjct: 8   YSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
            +    D                          T LH A+ +G  ++V       A+ S+
Sbjct: 68  VDQLGGDL-----------------------NSTPLHWATRQGHLSMVVQLMKYGADPSL 104

Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS-REDVVKLLL 195
            D +  + +HLAA+ GH SI+  L  K    +    +     L  AA  +   D  +LLL
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163

Query: 196 ----NKKGIENYN---VLHLAAMYSREDVVKLLLNKKGINV 229
               +    + Y+    LH A +     V+ LLL   G NV
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANV 203

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  132 bits (334), Expect = 2e-37
 Identities = 49/220 (22%), Positives = 80/220 (36%), Gaps = 32/220 (14%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGE-GQTALHIASAEGDEALVKYFY 73
                  T LH AA    +D+V+  +  G  VD   G+   T LH A+ +G  ++V    
Sbjct: 37  QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM 96

Query: 74  GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
              A+ S+ D                       EG + +H+A+  G  ++V Y      +
Sbjct: 97  KYGADPSLIDG----------------------EGCSCIHLAAQFGHTSIVAYLIAKGQD 134

Query: 134 ASITDHQDRTPMHLAAENGH-ASIIELLADKFRASIFERTKEN-YNVLHLAAMYSREDVV 191
             + D    TP+  AA   H      LL      S+    K +    LH A +     V+
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF-NVSVNLGDKYHKNTALHWAVLAGNTTVI 193

Query: 192 KLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKK 225
            LLL      + + I+  + L LA       ++  L   +
Sbjct: 194 SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  120 bits (303), Expect = 8e-33
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 25/188 (13%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
              T LH A R+  L MV  L+ YG    + +GEG + +H+A+  G  ++V Y      +
Sbjct: 75  LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA-LVKYFYGAKANASIT 137
             + D                        G T L  A+         +       + ++ 
Sbjct: 135 VDMMDQ----------------------NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172

Query: 138 DHQD-RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN 196
           D     T +H A   G+ ++I LL +   A++  +  +  + L LA       ++  L  
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMINHLQE 231

Query: 197 KKGIENYN 204
            +  + Y+
Sbjct: 232 ARQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  107 bits (269), Expect = 8e-28
 Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 34/193 (17%)

Query: 46  VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLM 105
           +   +      +  A+  G     +    A  +    D                      
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK--------------------- 40

Query: 106 GEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADK 163
            E  T LH A+      LVKY+   GA  +    D  + TP+H A   GH S++  L   
Sbjct: 41  -ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL-NSTPLHWATRQGHLSMVVQLMKY 98

Query: 164 FRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYS-RED 216
             A       E  + +HLAA +    +V  L+      +         L  AA  +   D
Sbjct: 99  -GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157

Query: 217 VVKLLLNKKGINV 229
             +LLL    ++V
Sbjct: 158 PTRLLL-TFNVSV 169

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 71.7 bits (177), Expect = 7e-15
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
           + +  D      +  A + G       L +     + +  KEN  +LH AA+ +R D+VK
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVK 59

Query: 193 LLL------NKKGIE-NYNVLHLAAMYSREDVVKLLLNKKGINV 229
             +      ++ G + N   LH A       +V  L+   G + 
Sbjct: 60  YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK-YGADP 102

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 67.1 bits (165), Expect = 3e-13
 Identities = 16/65 (24%), Positives = 34/65 (52%)

Query: 14  KATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY 73
                + +TALH A    +  ++ +L++ G +VD QN +G++AL +A    +  ++ +  
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230

Query: 74  GAKAN 78
            A+  
Sbjct: 231 EARQA 235

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  135 bits (343), Expect = 2e-37
 Identities = 34/237 (14%), Positives = 72/237 (30%), Gaps = 38/237 (16%)

Query: 15  ATTINGDTALHLAAR--KRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
                G TALH         L+M++ILV  G S   ++   +T L  A    +   +   
Sbjct: 133 VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLM 192

Query: 73  YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
                         +    + +   +        +G + LH A     E +   F     
Sbjct: 193 --------------MDTVPSKSSLRLDYAN---KQGNSHLHWAILINWEDVAMRFVEMGI 235

Query: 133 NASITDHQDRTPMHLAAENGHASIIELL------------ADKFRASIFERTKENYNVLH 180
           + ++ D++   P++L+       + + L                  ++        + + 
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP 295

Query: 181 LAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
            AA  S+++V++LL        +               +   V ++ L      V  
Sbjct: 296 AAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA-PSAPVRT 351

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  131 bits (331), Expect = 1e-35
 Identities = 43/227 (18%), Positives = 73/227 (32%), Gaps = 49/227 (21%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
            +       +H+AARK   D VR L++ G S  IQN  G TALH+A   G     KY   
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
                S+                          GQ  +H+A       LV          
Sbjct: 75  VGEVHSLWH------------------------GQKPIHLAVMANKTDLVVALVEGAKE- 109

Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMY--SREDVVK 192
                + + P  L  E     + E+ +         +  +    LH          +++K
Sbjct: 110 -----RGQMPESLLNECDEREVNEIGSH-------VKHCKGQTALHWCVGLGPEYLEMIK 157

Query: 193 LLL------NKKGIENYNVLHLAAMYSREDVVKLLLN----KKGINV 229
           +L+        K   +   L  A  +   + + L+++    K  + +
Sbjct: 158 ILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL 204

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  119 bits (300), Expect = 3e-31
 Identities = 27/219 (12%), Positives = 58/219 (26%), Gaps = 47/219 (21%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTS-----VDIQNGEGQTALHIASAEGDEALV 69
           A     +T L  A   R+ + + +++D   S     +D  N +G + LH A     E + 
Sbjct: 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227

Query: 70  KYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF-- 127
             F     + ++ D+                      E    L+++       L K    
Sbjct: 228 MRFVEMGIDVNMEDN----------------------EHTVPLYLSVRAAMVLLTKELLQ 265

Query: 128 YGAK-----------ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENY 176
                                       +  AA+     +++LL +K    +        
Sbjct: 266 KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK-LDEVVRSLNTGA 324

Query: 177 NVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLA 209
                    +   V ++ L        +         ++
Sbjct: 325 GGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  102 bits (257), Expect = 4e-25
 Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 34/186 (18%)

Query: 46  VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLM 105
               + E    +H+A+ +G    V+       + +I +                      
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR--------------------- 51

Query: 106 GEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFR 165
             G TALH+A   G     KY        S+     + P+HLA       ++  L     
Sbjct: 52  -FGCTALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVAL----- 103

Query: 166 ASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMY--SREDVVKLLLN 223
             +    +       L       +V ++  + K  +    LH          +++K+L+ 
Sbjct: 104 --VEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161

Query: 224 KKGINV 229
             G + 
Sbjct: 162 -LGASP 166

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 76.4 bits (189), Expect = 6e-16
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRED 189
            K N   +D ++   +H+AA  G    +  L +    S   + +     LHLA  +   D
Sbjct: 9   PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVD 67

Query: 190 VVKLLL----NKKGIENYNVLHLAAMYSREDVVKLLLNKK 225
             K L               +HLA M ++ D+V  L+   
Sbjct: 68  TAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGA 107

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 160 LADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYS 213
           + D  + +  +   EN   +H+AA   + D V+ L+        +       LHLA  + 
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64

Query: 214 REDVVKLLLNKKGINVAALGGE 235
             D  K L +  G   +   G+
Sbjct: 65  CVDTAKYLAS-VGEVHSLWHGQ 85

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  131 bits (331), Expect = 5e-37
 Identities = 51/228 (22%), Positives = 84/228 (36%), Gaps = 40/228 (17%)

Query: 14  KATTINGDTALHLAARK----RDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALV 69
           +  T +GD+ LHLA         ++++R +      ++ QN   QT LH+A       + 
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 70  KYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF-- 127
           +   GA  +  + D                        G T LH+A  +G  A V     
Sbjct: 62  EALLGAGCDPELRDF----------------------RGNTPLHLACEQGCLASVGVLTQ 99

Query: 128 YGAKANAS----ITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN-YNVLHLA 182
                +       T++   T +HLA+ +G+  I+ELL     A +  +   N    LHLA
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLA 158

Query: 183 AMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNK 224
                 D+V LLL      N+   + Y+   L        + + L   
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  121 bits (307), Expect = 2e-33
 Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 25/225 (11%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           +   +    A  L        T LHLA      ++   L+  G   ++++  G T LH+A
Sbjct: 27  VIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 85

Query: 61  SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
             +G  A V     +           +   + A              G T LH+AS  G 
Sbjct: 86  CEQGCLASVGVLTQSCTT------PHLHSILKATNY----------NGHTCLHLASIHGY 129

Query: 121 EALVKYFYGAKANASITDHQD-RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVL 179
             +V+      A+ +  +  + RT +HLA +  +  ++ LL     A +   T + Y+  
Sbjct: 130 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPY 188

Query: 180 HLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVV 218
            L        + + L        +   E+ +           +  
Sbjct: 189 QLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 88.8 bits (221), Expect = 5e-21
 Identities = 30/152 (19%), Positives = 47/152 (30%), Gaps = 23/152 (15%)

Query: 8   QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNG-EGQTALHIASAEGDE 66
                LKAT  NG T LHLA+    L +V +LV  G  V+ Q    G+TALH+A    + 
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 164

Query: 67  ALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKY 126
            LV       A+ +   +                      +G +   +        + + 
Sbjct: 165 DLVSLLLKCGADVNRVTY----------------------QGYSPYQLTWGRPSTRIQQQ 202

Query: 127 FYGAKANASITDHQDRTPMHLAAENGHASIIE 158
                        +         E+      E
Sbjct: 203 LGQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  128 bits (324), Expect = 3e-36
 Identities = 42/219 (19%), Positives = 73/219 (33%), Gaps = 36/219 (16%)

Query: 17  TINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAK 76
           T      L  A ++    +  IL D    VD  + EG T L+IA    D  + K      
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANA 134
           A+ ++ +                          +    A A+G   ++ Y   +    + 
Sbjct: 63  ADINLQNS----------------------ISDSPYLYAGAQGRTEILAYMLKHAT-PDL 99

Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSR-----ED 189
           +  +      +  AAE GH   ++LL +  R  I  +    Y  L  A          +D
Sbjct: 100 NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159

Query: 190 VVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLL 222
           +VKLL+      + K       +  A      ++ K+L 
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  105 bits (265), Expect = 1e-27
 Identities = 36/194 (18%), Positives = 60/194 (30%), Gaps = 35/194 (18%)

Query: 48  IQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGE 107
           ++  E    L  A+    + + +            D                       E
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT----------------------E 38

Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
           G T L+IA    D  + K      A+ ++ +    +P   A   G   I+  +       
Sbjct: 39  GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD 98

Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL-------NKKGIENYNVLHLAAMYSR-----E 215
           + +  +   N L  AA     D VKLLL       + +    Y  L  A          +
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158

Query: 216 DVVKLLLNKKGINV 229
           D+VKLL+   G + 
Sbjct: 159 DIVKLLME-NGADQ 171

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  104 bits (261), Expect = 5e-27
 Identities = 30/189 (15%), Positives = 64/189 (33%), Gaps = 32/189 (16%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
                G+T L++A    D+++ + L+D G  +++QN    +    A A+G   ++ Y   
Sbjct: 34  EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLK 93

Query: 73  YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGA-K 131
           +    + +  +                        G  AL  A+ +G    VK      +
Sbjct: 94  HAT-PDLNKHNR----------------------YGGNALIPAAEKGHIDNVKLLLEDGR 130

Query: 132 ANASITDHQDRTPMHLAA-----ENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS 186
            +    +    T +  A         +  I++LL +   A    +       +  A    
Sbjct: 131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSIKDNSGRTAMDYANQKG 189

Query: 187 REDVVKLLL 195
             ++ K+L 
Sbjct: 190 YTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 66.7 bits (164), Expect = 2e-13
 Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 28/130 (21%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTS-VDIQNGEGQTALHIA- 60
             +       L      G  AL  AA K  +D V++L++ G   +D QN  G TAL  A 
Sbjct: 89  AYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV 148

Query: 61  ----SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIAS 116
                 +  + +VK      A+ SI D                        G+TA+  A+
Sbjct: 149 GLREGNQLYQDIVKLLMENGADQSIKD----------------------NSGRTAMDYAN 186

Query: 117 AEGDEALVKY 126
            +G   + K 
Sbjct: 187 QKGYTEISKI 196

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  124 bits (315), Expect = 2e-35
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 23/179 (12%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
               ++H  A + ++  +   ++    ++  + EG T L  A+A G  A+V++     A+
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
             +                           ++AL +A ++G   +VK       + +  D
Sbjct: 62  PQLLGK----------------------GRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99

Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK 197
               TP+  A    H   +++L +   A     T   YN + LA       V +++ + 
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  112 bits (282), Expect = 1e-30
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 30/187 (16%)

Query: 51  GEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQT 110
           G    ++H  +A+G+   +      +   + TD                       EG T
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENVINHTDE----------------------EGFT 38

Query: 111 ALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFE 170
            L  A+A G  A+V++     A+  +      + + LA   G+  I+++L D     + E
Sbjct: 39  PLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNE 97

Query: 171 RTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNK 224
                   L  A   +    VK+LL        +    YN + LA       V +++ + 
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES- 156

Query: 225 KGINVAA 231
             + +  
Sbjct: 157 HLLKLLQ 163

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  105 bits (266), Expect = 4e-28
 Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 23/160 (14%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
            T   G T L  AA    + +V  L+  G    +     ++AL +A ++G   +VK    
Sbjct: 31  HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 90

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
              + +  D                        G T L  A        VK    + A+ 
Sbjct: 91  CGVDVNEYDW----------------------NGGTPLLYAVHGNHVKCVKMLLESGADP 128

Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE 174
           +I        M LA   G+ S+ +++       + +  KE
Sbjct: 129 TIETDSGYNSMDLAVALGYRSVQQVIESH-LLKLLQNIKE 167

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  129 bits (326), Expect = 4e-35
 Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 52/244 (21%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
           A+     T LHLAA    + +V++L+ +G  V  ++  G   LH A + G   + +    
Sbjct: 53  ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK 112

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
             A  +  D                          T LH A+++    +        A+ 
Sbjct: 113 HGACVNAMDL----------------------WQFTPLHEAASKNRVEVCSLLLSHGADP 150

Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKF--------------------RASIFERTKE 174
           ++ +   ++ + +A        +                               F++ + 
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210

Query: 175 NYNVLHLAAM---YSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKK 225
           +   LH A       R+ V +LLL      N+K  +    LH+AA  +  DV+++L  K 
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH-KH 269

Query: 226 GINV 229
           G  +
Sbjct: 270 GAKM 273

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  126 bits (320), Expect = 3e-34
 Identities = 39/220 (17%), Positives = 66/220 (30%), Gaps = 34/220 (15%)

Query: 15  ATTINGDTALHLAARKRDLD-MVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF- 72
            T       L  AAR  + + ++ +L     +    +G   T LH+A+      +V+   
Sbjct: 19  LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL 78

Query: 73  -YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
            +GA  +A                            G   LH A + G   + +      
Sbjct: 79  QHGADVHAKDKG------------------------GLVPLHNACSYGHYEVTELLLKHG 114

Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
           A  +  D    TP+H AA      +  LL     A          + + +A      + +
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRERL 173

Query: 192 KLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
                       + L  AA  +    VK  L  + IN   
Sbjct: 174 TYEFKG------HSLLQAAREADLAKVKKTLALEIINFKQ 207

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  123 bits (312), Expect = 4e-33
 Identities = 49/226 (21%), Positives = 84/226 (37%), Gaps = 45/226 (19%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
           A  +   T LH AA K  +++  +L+ +G    + N  G++A+ +A        + Y + 
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF- 177

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
                                           +G + L  A+ E D A VK     +   
Sbjct: 178 --------------------------------KGHSLLQ-AAREADLAKVKKTLALEIIN 204

Query: 135 SITDHQDRTPMHLAAENGHAS---IIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
                   T +H A  + H     + ELL  K  A++ E+ K+    LH+AA  +  DV+
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVM 263

Query: 192 KLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
           ++L       N         LH AA+       +LLL+  G + + 
Sbjct: 264 EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS-YGSDPSI 308

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  113 bits (285), Expect = 3e-29
 Identities = 42/223 (18%), Positives = 66/223 (29%), Gaps = 43/223 (19%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGD-EALVKYFYGAKA 77
            G +AL LA             D      +     +  L  A+  G+ E L+        
Sbjct: 3   FGKSALDLA-------------DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV 49

Query: 78  NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
           N   +D                      G   T LH+A+      +V+      A+    
Sbjct: 50  NCHASD----------------------GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87

Query: 138 DHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL-- 195
           D     P+H A   GH  + ELL     A +       +  LH AA  +R +V  LLL  
Sbjct: 88  DKGGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146

Query: 196 ----NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGG 234
                       + + +A      + +        +  AA   
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREA 189

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 95.3 bits (238), Expect = 1e-22
 Identities = 40/201 (19%), Positives = 67/201 (33%), Gaps = 38/201 (18%)

Query: 18  INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEAL---VKYFYG 74
             G + L  AAR+ DL  V+  +        Q    +TALH A A          +    
Sbjct: 177 FKGHSLLQ-AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR 235

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKA 132
             AN +  +                       +  T LH+A+      +++    +GAK 
Sbjct: 236 KGANVNEKNK----------------------DFMTPLHVAAERAHNDVMEVLHKHGAKM 273

Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
           NA   D   +T +H AA  GH     LL     +     + + +    +      E V +
Sbjct: 274 NA--LDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIISLQGFTAAQMGN----EAVQQ 326

Query: 193 LLL---NKKGIENYNVLHLAA 210
           +L      +  +    L  A+
Sbjct: 327 ILSESTPMRTSDVDYRLLEAS 347

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 80.6 bits (200), Expect = 2e-17
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 29/138 (21%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
               +  T LH+AA +   D++ +L  +G  ++  +  GQTALH A+  G     +    
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
             ++ SI   Q                      G TA  + +    + L +         
Sbjct: 302 YGSDPSIISLQ----------------------GFTAAQMGNEAVQQILSE---STPMRT 336

Query: 135 SITDHQDRTPMHLAAENG 152
           S  D      +  A++ G
Sbjct: 337 SDVD----YRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGD 65
             ++ G TA  +       + V+ ++   T +   + + +  L  AS  GD
Sbjct: 308 IISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVDYR--LLEASKAGD 351

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  127 bits (322), Expect = 2e-34
 Identities = 49/251 (19%), Positives = 84/251 (33%), Gaps = 53/251 (21%)

Query: 3   ELLSTQTAEQLK-------ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQT 55
           E L    A++         A   + +T L LA   R   +V  L+  G    I N   ++
Sbjct: 142 EDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS 201

Query: 56  ALHIASAEGDEALVKY-----FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQT 110
           ALH A+A  D  ++ Y                                         G T
Sbjct: 202 ALHQAAANRDFGMMVYMLNSTKLKGDIEEL------------------------DRNGMT 237

Query: 111 ALHIASAEGDE---ALVKYF--YGAKANASITDHQD------RTPMHLAAENGHASIIEL 159
           AL I +        A  K     GAK +      +D      RT +H AA+  +  I++ 
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 297

Query: 160 LADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYS 213
           L  +  ++  ++ ++    + LAA   R +VV  L+            ++    LA   +
Sbjct: 298 LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN 357

Query: 214 REDVVKLLLNK 224
             ++V +    
Sbjct: 358 HHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  119 bits (301), Expect = 3e-31
 Identities = 37/238 (15%), Positives = 57/238 (23%), Gaps = 46/238 (19%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
                        +  +                E    LH   A G  A+ +       N
Sbjct: 60  YSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVN 118

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALV--------KYFYGA 130
                H                        +T LH  ++               K    A
Sbjct: 119 IIDPRH-----------------------NRTVLHWIASNSSAEKSEDLIVHEAKECIAA 155

Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV 190
            A+ +  D  + TP+ LA       ++  L     A      K   + LH AA      +
Sbjct: 156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGM 214

Query: 191 VKLLL---------NKKGIENYNVLHLAAMYSRED---VVKLLLNKKGINVAALGGED 236
           +  +L          +        L + A     D     KLL+  KG  V   G   
Sbjct: 215 MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVE-KGAKVDYDGAAR 271

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  110 bits (276), Expect = 8e-28
 Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 48/226 (21%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
           +   +L  A+    +   R  + +                     G++ L  + +     
Sbjct: 36  SSQHSLLEASYDGYIKRQRNELQHY---------SLYPNPQGYGNGNDFLGDFNHTNLQI 86

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
            +  +                       E    LH   A G  A+ +       N     
Sbjct: 87  PTEPEP----------------------ESPIKLHTE-AAGSYAITEPITRESVNIIDPR 123

Query: 139 HQDRTPMHLAAENGHASIIELLADKFR-------ASIFERTKENYNVLHLAAMYSREDVV 191
           H +RT +H  A N  A   E L            A +     +    L LA +  R  +V
Sbjct: 124 H-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 182

Query: 192 KLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKK--GINV 229
             L+              + LH AA      ++  +LN      ++
Sbjct: 183 AYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.0 bits (172), Expect = 9e-14
 Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 16/138 (11%)

Query: 101 NCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
           N   +   Q +L  AS +G           K   +   H    P      NG+  + +  
Sbjct: 30  NHQSITSSQHSLLEASYDGY---------IKRQRNELQHYSLYPNPQGYGNGNDFLGDFN 80

Query: 161 ADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK-----KGIENYNVLHLAAMYSRE 215
                    E   E+   LH  A  S   + + +  +         N  VLH  A  S  
Sbjct: 81  HTN-LQIPTEPEPESPIKLHTEAAGSYA-ITEPITRESVNIIDPRHNRTVLHWIASNSSA 138

Query: 216 DVVKLLLNKKGINVAALG 233
           +  + L+  +     A G
Sbjct: 139 EKSEDLIVHEAKECIAAG 156

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  121 bits (307), Expect = 4e-34
 Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 23/190 (12%)

Query: 8   QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA 67
           + +        +    L  AAR    D VRIL+  G  V+ ++  G T LH+A+  G   
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 68  LVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF 127
           +V+      A+ +  DH                       G T L +A+  G   +V+  
Sbjct: 62  IVEVLLKNGADVNAVDH----------------------AGMTPLRLAALFGHLEIVEVL 99

Query: 128 YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSR 187
               A+ +  D +  TP+HLAA  GH  I+E+L     A +  + K       ++     
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNGN 158

Query: 188 EDVVKLLLNK 197
           ED+ ++L   
Sbjct: 159 EDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 95.5 bits (239), Expect = 4e-24
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 8/128 (6%)

Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
               L  A+  G +  V+      A+ +  D    TP+HLAA NGH  I+E+L     A 
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN-GAD 72

Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
           +          L LAA++   ++V++LL      N   +E +  LHLAAM+   ++V++L
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132

Query: 222 LNKKGINV 229
           L K G +V
Sbjct: 133 L-KNGADV 139

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  118 bits (299), Expect = 7e-33
 Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 24/179 (13%)

Query: 20  GDTALHLAARKRDLDMVRILVDYGT-SVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
              ++H  A + +LD ++  +  G   V+  +  G T L  ASA G+   V++     A+
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
             I                         E ++AL +AS  G   +V        + +I D
Sbjct: 62  PHILAK----------------------ERESALSLASTGGYTDIVGLLLERDVDINIYD 99

Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK 197
               TP+  A    H   +E L  +  A +       Y  + LA       V +++ N 
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  104 bits (262), Expect = 1e-27
 Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 26/174 (14%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           +    +    +      G T L  A+   +++ VR L+++G    I   E ++AL +AS 
Sbjct: 19  KEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAST 78

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
            G   +V        + +I D                        G T L  A       
Sbjct: 79  GGYTDIVGLLLERDVDINIYDW----------------------NGGTPLLYAVRGNHVK 116

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL----ADKFRASIFERT 172
            V+      A+ +       TPM LA   G+  + +++       F++++    
Sbjct: 117 CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 81.7 bits (203), Expect = 5e-19
 Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 22/130 (16%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
                 ++AL LA+     D+V +L++    ++I +  G T L  A        V+    
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
             A+ +                           G T + +A A G   + +         
Sbjct: 124 RGADLTTEAD----------------------SGYTPMDLAVALGYRKVQQVIENHILKL 161

Query: 135 SITDHQDRTP 144
             ++     P
Sbjct: 162 FQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 71.3 bits (176), Expect = 3e-15
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 141 DRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL----- 195
           D   +H  A  G    ++    K    + +  +  +  L  A+ +   + V+ LL     
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 196 -NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
            +    E  + L LA+     D+V LLL ++ +++
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLL-ERDVDI 95

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  118 bits (299), Expect = 1e-32
 Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 39/212 (18%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
           NG+    +   K     +  L +       ++   +T L +A   G E  +        K
Sbjct: 7   NGEIVEKIKDEKSINQNLDFLRN------YRDSYNRTPLMVACMLGMENAIDKLVENFDK 60

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
                       +DI               EG TAL  A       + +      +N + 
Sbjct: 61  LED---------KDI---------------EGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96

Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL- 195
            D   +TP+  +   G++ +   L +   A++ +R  E    L +A+ Y R ++VK LL 
Sbjct: 97  KDFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLE 155

Query: 196 -----NKKGIENYNVLHLAAMYSREDVVKLLL 222
                + + +        A ++ R++V+K+  
Sbjct: 156 LGADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  116 bits (293), Expect = 8e-32
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 32/198 (16%)

Query: 3   ELLSTQTAEQLK-ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIAS 61
           E    Q  + L+        T L +A      + +  LV+    ++ ++ EG TAL  A 
Sbjct: 17  EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAV 76

Query: 62  AEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG 119
                 + +     G+  N          +D                 G+T L  +   G
Sbjct: 77  KNNRLGIAEKLLSKGSNVNT---------KDF---------------SGKTPLMWSIIFG 112

Query: 120 DEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYN 177
              +  +   +GA  N    + +  TP+ +A++ G + I++ L +   A I  R      
Sbjct: 113 YSEMSYFLLEHGANVND--RNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLT 169

Query: 178 VLHLAAMYSREDVVKLLL 195
               A ++ R++V+K+  
Sbjct: 170 AEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  100 bits (251), Expect = 1e-25
 Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 36/188 (19%)

Query: 48  IQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGE 107
             +  G+    I   +     + +    + +                             
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRNYRDS----------------------------Y 34

Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
            +T L +A   G E  +             D +  T +  A +N    I E L  K  ++
Sbjct: 35  NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSN 93

Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
           +  +       L  + ++   ++   LL      N + +E    L +A+ Y R ++VK L
Sbjct: 94  VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

Query: 222 LNKKGINV 229
           L + G ++
Sbjct: 154 L-ELGADI 160

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  118 bits (298), Expect = 2e-31
 Identities = 41/217 (18%), Positives = 75/217 (34%), Gaps = 36/217 (16%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
           +       A    D + V  L++ G  ++  N +G TALH A  + +  +VK+     AN
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
            +  D+                      EG   LH A++ G   + +Y     A+    +
Sbjct: 99  INQPDN----------------------EGWIPLHAAASCGYLDIAEYLISQGAHVGAVN 136

Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL--- 195
            +  TP+ +A E     +++   ++    I                    D  + L    
Sbjct: 137 SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA-------RKEEERIMLRDARQWLNSGH 189

Query: 196 ---NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
               +        LH+AA     +V+KLL+     +V
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDV 225

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  117 bits (297), Expect = 3e-31
 Identities = 41/215 (19%), Positives = 71/215 (33%), Gaps = 29/215 (13%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
                  L         +   V       ++  +G      A + GD   V      GA 
Sbjct: 7   KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGAD 65

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
            N +  D                        G TALH A  + +  +VK+     AN + 
Sbjct: 66  INYANVD------------------------GLTALHQACIDDNVDMVKFLVENGANINQ 101

Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN 196
            D++   P+H AA  G+  I E L  +  A +     E    L +A   + E++++  +N
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 197 KKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
           ++G++              D  + L +   IN   
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWLNS-GHINDVR 194

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  114 bits (287), Expect = 7e-30
 Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 36/223 (16%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
                G   LH AA    LD+   L+  G  V   N EG T L IA  E  E L++    
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
            +                              + + A             ++      N 
Sbjct: 161 RQGV----------------------------DIEAARKEEERIMLRDARQWLNSGHIND 192

Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
                   T +H+AA  G+  +++LL    R  +  +  + +  LH AA + +E+  ++L
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 195 L------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
           +                  +A       + +L   K+ +  + 
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADEDILGYLEELQK-KQNLLHSE 293

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  103 bits (259), Expect = 7e-26
 Identities = 26/190 (13%), Positives = 66/190 (34%), Gaps = 30/190 (15%)

Query: 46  VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLM 105
           + + + + +    +    G E  ++     +    +                        
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF---------------------- 38

Query: 106 GEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFR 165
            +       A + GD   V       A+ +  +    T +H A  + +  +++ L +   
Sbjct: 39  -DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN-G 96

Query: 166 ASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVK 219
           A+I +   E +  LH AA     D+ + L+           E    L +A   + E++++
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156

Query: 220 LLLNKKGINV 229
             +N++G+++
Sbjct: 157 NEVNRQGVDI 166

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 25/140 (17%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           + L++           +G TALH+AA K   +++++L+     V+I++ +G T LH A+ 
Sbjct: 183 QWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
            G E   +       +    +                        GQTA  +A  +    
Sbjct: 242 WGKEEACRILVENLCDMEAVNK----------------------VGQTAFDVADEDILGY 279

Query: 123 LVKYFYGAKANASITDHQDR 142
           L +     K N   ++ +++
Sbjct: 280 LEE--LQKKQNLLHSEKREK 297

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  114 bits (287), Expect = 4e-31
 Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 24/193 (12%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYG-TSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
                +    R+ +   VR+ +D     ++  +  G + LH A  EG  A+V+      A
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 78  NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
             ++ +                          T LH+A++ G   +V+     KA+ +  
Sbjct: 64  RINVMNR----------------------GDDTPLHLAASHGHRDIVQKLLQYKADINAV 101

Query: 138 DHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK 197
           +     P+H A   G   + E L     A +    K     +  A    RE + +     
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

Query: 198 KGIENYNVLHLAA 210
               N        
Sbjct: 161 GQNLNRIPYKDTF 173

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  103 bits (259), Expect = 5e-27
 Identities = 39/184 (21%), Positives = 66/184 (35%), Gaps = 29/184 (15%)

Query: 52  EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTA 111
           E    +     EG+   V+ +     N           D+                G + 
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTEN-----------DLNQGDD----------HGFSP 42

Query: 112 LHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFER 171
           LH A  EG  A+V+      A  ++ +  D TP+HLAA +GH  I++ L    +A I   
Sbjct: 43  LHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAV 101

Query: 172 TKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKK 225
            +     LH A  + ++ V + L+      +         +  A    RE + +    K 
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE-KM 160

Query: 226 GINV 229
           G N+
Sbjct: 161 GQNL 164

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  100 bits (251), Expect = 7e-26
 Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 22/158 (13%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
            L    T   L     +G + LH A R+    +V +L+  G  +++ N    T LH+A++
Sbjct: 22  RLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS 81

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
            G   +V+     KA+ +  +                        G   LH A   G + 
Sbjct: 82  HGHRDIVQKLLQYKADINAVNE----------------------HGNVPLHYACFWGQDQ 119

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
           + +      A  SI +     P+  A       + E  
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 87.5 bits (218), Expect = 5e-21
 Identities = 29/141 (20%), Positives = 41/141 (29%), Gaps = 32/141 (22%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
                 DT LHLAA     D+V+ L+ Y   ++  N  G   LH A   G + + +    
Sbjct: 67  VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKA 132
             A  SI +                        G+  +  A A   E L +     G   
Sbjct: 127 NGALVSICNK----------------------YGEMPVDKAKAPLRELLRERAEKMGQNL 164

Query: 133 NASITDHQDRTPMHLAAENGH 153
           N          P       G 
Sbjct: 165 NR--------IPYKDTFWKGT 177

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  112 bits (284), Expect = 7e-31
 Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 27/181 (14%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
                L  AA + DL+ +  L+    +V+ QNG G+TAL +    G+  + +     GA 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGAN 62

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
            +                             G   +H A+  G    ++     +A+ +I
Sbjct: 63  PDLKDRT------------------------GFAVIHDAARAGFLDTLQTLLEFQADVNI 98

Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN 196
            D++   P+HLAA+ GH  ++E L     +++  R  +      LA +Y R +VV L+  
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

Query: 197 K 197
            
Sbjct: 159 N 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 87.4 bits (218), Expect = 3e-21
 Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 105 MGE-GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK 163
           M E     L  A+A GD   +        N +  +   RT + +    G+  I   L  +
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR 59

Query: 164 FRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDV 217
             A+   + +  + V+H AA     D ++ LL      N +  E    LHLAA      V
Sbjct: 60  -GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118

Query: 218 VKLLLNKKGINV 229
           V+ L+     NV
Sbjct: 119 VEFLVKHTASNV 130

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 87.1 bits (217), Expect = 4e-21
 Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 26/148 (17%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
           A    G TAL +       ++ R L+  G + D+++  G   +H A+  G    ++    
Sbjct: 33  AQNGFGRTALQVMKLGN-PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE 91

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKA 132
            +A+ +I D+                      EG   LH+A+ EG   +V++   + A +
Sbjct: 92  FQADVNIEDN----------------------EGNLPLHLAAKEGHLRVVEFLVKHTA-S 128

Query: 133 NASITDHQDRTPMHLAAENGHASIIELL 160
           N    +H+  T   LA   G   ++ L+
Sbjct: 129 NVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.8 bits (167), Expect = 5e-14
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 27/120 (22%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
                G   +H AAR   LD ++ L+++   V+I++ EG   LH+A+ EG   +V++   
Sbjct: 65  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124

Query: 73  YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGA 130
           + A +N    +H                      +G TA  +A   G   +V      GA
Sbjct: 125 HTA-SNVGHRNH----------------------KGDTACDLARLYGRNEVVSLMQANGA 161

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  106 bits (266), Expect = 1e-27
 Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 32/215 (14%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYG-----TSVDIQNGEGQT 55
           + +LL  +  E +      G+TALH+AA   +L+   +L++         +  +  EGQT
Sbjct: 19  LSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT 77

Query: 56  ALHIASAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALH 113
           ALHIA    +  LV+     GA  +A  T                     L+  G+  L 
Sbjct: 78  ALHIAVINQNVNLVRALLARGASVSARATG-----------SVFHYRPHNLIYYGEHPLS 126

Query: 114 IASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGH----ASIIELLADK---- 163
            A+  G E +V+    +GA   A   D    T +H+     +      +  LL       
Sbjct: 127 FAACVGSEEIVRLLIEHGADIRA--QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184

Query: 164 -FRASIFERTKENYNVLHLAAMYSREDVVKLLLNK 197
             ++       +      LA +     + + L+ K
Sbjct: 185 HLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  113 bits (283), Expect = 4e-30
 Identities = 51/221 (23%), Positives = 83/221 (37%), Gaps = 32/221 (14%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
            T  +  TALH A      ++V  L+  G  V+ ++  G + LHIA++ G + +VK    
Sbjct: 35  RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV 94

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
             A+ +  +                        G T LH A+++    +        AN 
Sbjct: 95  KGAHVNAVNQ----------------------NGCTPLHYAASKNRHEIAVMLLEGGANP 132

Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
              DH D T MH AA  G+  ++ +L    +AS   +  E    LHLA    R +  K L
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTPLHLACDEERVEEAKFL 191

Query: 195 L------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
           +        +  E    L +A       ++   L  +G   
Sbjct: 192 VTQGASIYIENKEEKTPLQVAK--GGLGLILKRLA-EGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  112 bits (281), Expect = 1e-29
 Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 29/213 (13%)

Query: 18  INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
           ++     +LA   +  ++   ++   +     + + +TALH A + G   +V++      
Sbjct: 5   VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 78  NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
             +  D                        G + LHIA++ G + +VK      A+ +  
Sbjct: 65  PVNDKDD----------------------AGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102

Query: 138 DHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL-- 195
           +    TP+H AA      I  +L +   A+   +   +   +H AA      +V +LL  
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161

Query: 196 ----NKKGIENYNVLHLAAMYSREDVVKLLLNK 224
               N +  E    LHLA    R +  K L+ +
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.5 bits (170), Expect = 4e-14
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 24/149 (16%)

Query: 12  QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
            + A   NG T LH AA K   ++  +L++ G + D ++    TA+H A+A+G+  +V  
Sbjct: 98  HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 72  FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
               KA+ +I D                       EG T LH+A  E      K+     
Sbjct: 158 LLFYKASTNIQDT----------------------EGNTPLHLACDEERVEEAKFLVTQG 195

Query: 132 ANASITDHQDRTPMHLAAENGHASIIELL 160
           A+  I + +++TP+ +A   G   +I   
Sbjct: 196 ASIYIENKEEKTPLQVAK--GGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.0 bits (122), Expect = 8e-08
 Identities = 30/93 (32%), Positives = 40/93 (43%)

Query: 12  QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
              A      TA+H AA K +L MV IL+ Y  S +IQ+ EG T LH+A  E      K+
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190

Query: 72  FYGAKANASITDHQGIQRDIAAAGTSVLANCLL 104
                A+  I + +       A G   L    L
Sbjct: 191 LVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  110 bits (277), Expect = 8e-30
 Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 26/178 (14%)

Query: 20  GDTALHLAARKRDLDMVRILVD-YGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
               L  AA + D+  VR L+       D  N  G+TAL +    G  A+        A+
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGAS 60

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
            ++ D                        G + +H A+  G    +K      A+ ++ D
Sbjct: 61  PNVQDT----------------------SGTSPVHDAARTGFLDTLKVLVEHGADVNVPD 98

Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN 196
                P+HLA + GH +++  LA +  + +  R       L LA     +D+V +L  
Sbjct: 99  GTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 92.5 bits (231), Expect = 3e-23
 Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 25/158 (15%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
            LL  +      A    G TAL +        +   L+  G S ++Q+  G + +H A+ 
Sbjct: 20  RLLHRELVH-PDALNRFGKTALQVMMFGS-TAIALELLKQGASPNVQDTSGTSPVHDAAR 77

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
            G    +K      A+ ++ D                        G   +H+A  EG  A
Sbjct: 78  TGFLDTLKVLVEHGADVNVPDG----------------------TGALPIHLAVQEGHTA 115

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
           +V +   A+++    D +  TP+ LA + G   ++++L
Sbjct: 116 VVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 84.8 bits (211), Expect = 2e-20
 Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 13/132 (9%)

Query: 108 GQTALHIASAEGDEALVKYF---YGAKANASITDHQDRTPMHLAAENGHASIIELLADKF 164
               L  A+A GD   V+          +A   +   +T + +    G  +I   L  + 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDA--LNRFGKTALQVMM-FGSTAIALELLKQ- 57

Query: 165 RASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVV 218
            AS   +     + +H AA     D +K+L+      N         +HLA       VV
Sbjct: 58  GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117

Query: 219 KLLLNKKGINVA 230
             L  +  ++  
Sbjct: 118 SFLAAESDLHRR 129

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  111 bits (280), Expect = 2e-29
 Identities = 43/228 (18%), Positives = 73/228 (32%), Gaps = 31/228 (13%)

Query: 18  INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
           I G  +L    R          + +G  V          L  +S EG+  LV+       
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 78  NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
           + S+ +                       EG TALH A   G   +VK+      N +  
Sbjct: 62  DPSLPND----------------------EGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99

Query: 138 DHQDRTPMHLAAENGHASIIELLADKFRASIFERTK---ENYNVLHLAAMYSREDVVKLL 194
           D    TP+H AA   +  + + L +   A++F  T    +                 + L
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

Query: 195 LNK---KGIENYNVLHLAAMYSREDVVKLLLNKK-GINVAALGGEDLT 238
                  GI N  V++    Y  ++  +L + +   + +     ED  
Sbjct: 159 YGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEI 206

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 98.5 bits (246), Expect = 1e-24
 Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 35/207 (16%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
                L  ++ + + D+V+ ++       + N EG TALH A   G   +VK+   +G  
Sbjct: 36  LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANA 134
            NA+ +D                        G T LH A++  +  + K+    GA   A
Sbjct: 96  VNAADSD------------------------GWTPLHCAASCNNVQVCKFLVESGAAVFA 131

Query: 135 -SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK- 192
            + +D Q         E G+    + L    +  +    K     L      + +++   
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCSQFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMK 190

Query: 193 ----LLLNKKGIENYNVLHLAAMYSRE 215
               + +  +  E+      A +  +E
Sbjct: 191 EGDCMTIIHREDEDEIEWWWARLNDKE 217

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 88.4 bits (220), Expect = 7e-21
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 36/201 (17%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
                G TALH A      ++V+ LV +G +V+  + +G T LH A++  +  + K+   
Sbjct: 65  LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
           + A      +                      +          EG     ++ YG +   
Sbjct: 125 SGAAVFAMTYSD-------------------MQTAADKCEEMEEGYTQCSQFLYGVQEKM 165

Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
            I +      +            EL   +          +   ++H       ED ++  
Sbjct: 166 GIMNKGVIYALWDYEPQNDD---ELPMKE---------GDCMTIIHRED----EDEIEWW 209

Query: 195 L-NKKGIENYNVLHLAAMYSR 214
                  E Y   +L  +Y R
Sbjct: 210 WARLNDKEGYVPRNLLGLYPR 230

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  108 bits (272), Expect = 6e-29
 Identities = 32/208 (15%), Positives = 56/208 (26%), Gaps = 41/208 (19%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-YGAKA 77
            G     +  +                V     E +T    A+ + DE  +         
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLEDRDV 69

Query: 78  NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
           +A          D                 G+TAL   +  G +  V+    A A+    
Sbjct: 70  DA---------VD---------------ENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 105

Query: 138 DHQD-RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN 196
           D +   T +H+AA      ++E L +   A I    +     L LA    +         
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKTTPKGNP-- 162

Query: 197 KKGIENYNVLHLAAMYSREDVVKLLLNK 224
                    +        E V+ +L  +
Sbjct: 163 ---------MQFGRRIGLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  101 bits (253), Expect = 4e-26
 Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 37/191 (19%)

Query: 49  QNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEG 108
             GEG     I   +G            A+                         ++ E 
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAAD-------------------------VVSEY 44

Query: 109 QTALHIASAEGDEALVKYF-YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
           +T    A+ + DE  +         +A   D   RT +   A  G    + LLA+   A 
Sbjct: 45  ETPWWTAARKADEQALSQLLEDRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEA-GAD 101

Query: 168 IFER-TKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKL 220
           +  R  +     LH+AA Y R +VV+ L+        +       L LA    +      
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGN 161

Query: 221 LLNKKGINVAA 231
            + + G  +  
Sbjct: 162 PM-QFGRRIGL 171

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 73.7 bits (182), Expect = 5e-16
 Identities = 31/150 (20%), Positives = 46/150 (30%), Gaps = 40/150 (26%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGE-GQTALHIASAEGDEALVKYFY 73
           A   NG TAL   A       VR+L + G  +D ++   G TALH+A+      +V+   
Sbjct: 71  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130

Query: 74  GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
              A+  + D                        G TAL +A                  
Sbjct: 131 ELGADIEVEDE----------------------RGLTALELAREILKTTPKG-------- 160

Query: 134 ASITDHQDRTPMHLAAENGHASIIELLADK 163
                     PM      G   +I +L  +
Sbjct: 161 ---------NPMQFGRRIGLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 65.2 bits (160), Expect = 6e-13
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 10/104 (9%)

Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV 190
           K   S T  +      +  ++GH+      +    A +     E       AA  + E  
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI-AADV---VSEYETPWWTAARKADEQA 59

Query: 191 VKLLL-----NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
           +  LL     +         L   A    +  V+LL  + G ++
Sbjct: 60  LSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAGADL 102

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  109 bits (276), Expect = 7e-29
 Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 29/211 (13%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
             +T    AARK D   +  L++    VD  +  G+TAL   +  G +  V+    A A+
Sbjct: 44  EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 102

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
               D +G                     G TALH+A+      +V+      A+  + D
Sbjct: 103 LDHRDMRG---------------------GLTALHMAAGYVRPEVVEALVELGADIEVED 141

Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK 198
            +  T + LA E    +            I     E    +    ++   +V +++  + 
Sbjct: 142 ERGLTALELAREILKTTPKGNPMQF-GRRIGL---EKVINVLEGQVFEYAEVDEIVEKRG 197

Query: 199 GIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
             +  +V +L       D   +         
Sbjct: 198 --KGKDVEYLVRWKDGGDCEWVKG-VHVAED 225

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  109 bits (275), Expect = 1e-28
 Identities = 34/219 (15%), Positives = 64/219 (29%), Gaps = 34/219 (15%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-YGAKA 77
            G     +  +                V     E +T    A+ + DE  +         
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLEDRDV 70

Query: 78  NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
           +A          D                 G+TAL   +  G +  V+    A A+    
Sbjct: 71  DA---------VDE---------------NGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106

Query: 138 DHQD-RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN 196
           D +   T +H+AA      ++E L +   A I    +     L LA    +       + 
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKTTPKGNPMQ 165

Query: 197 K---KGIENYNVLHLAAMYSREDVVKLLLNKKGINVAAL 232
                G+E    +    ++   +V +++  K+G      
Sbjct: 166 FGRRIGLEKVINVLEGQVFEYAEVDEIVE-KRGKGKDVE 203

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  105 bits (264), Expect = 4e-27
 Identities = 37/220 (16%), Positives = 62/220 (28%), Gaps = 56/220 (25%)

Query: 20  GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
           G+    + +R                     GEG     I   +G            A+ 
Sbjct: 1   GEVNKIIGSRT-------------------AGEGAMEYLIEWKDGHSPSWVPSSYIAAD- 40

Query: 80  SITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF-YGAKANASITD 138
                                   ++ E +T    A+ + DE  +         +A   D
Sbjct: 41  ------------------------VVSEYETPWWTAARKADEQALSQLLEDRDVDA--VD 74

Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN-YNVLHLAAMYSREDVVKLLL-- 195
              RT +   A  G    + LLA+   A +  R        LH+AA Y R +VV+ L+  
Sbjct: 75  ENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 133

Query: 196 ----NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
                 +       L LA    +       + + G  +  
Sbjct: 134 GADIEVEDERGLTALELAREILKTTPKGNPM-QFGRRIGL 172

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 94.6 bits (236), Expect = 4e-23
 Identities = 34/203 (16%), Positives = 61/203 (30%), Gaps = 43/203 (21%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGE-GQTALHIASAEGDEALVKYFY 73
           A   NG TAL   A       VR+L + G  +D ++   G TALH+A+      +V+   
Sbjct: 72  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131

Query: 74  GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAK 131
              A+  + D                        G TAL +A              +G +
Sbjct: 132 ELGADIEVEDE----------------------RGLTALELAREILKTTPKGNPMQFGRR 169

Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
                   +    +       +A + E++  +          +  +V +L       D  
Sbjct: 170 IG-----LEKVINVLEGQVFEYAEVDEIVEKR---------GKGKDVEYLVRWKDGGDCE 215

Query: 192 KLLLNKKGIEN----YNVLHLAA 210
            +       +      + L  A 
Sbjct: 216 WVKGVHVAEDVAKDYEDGLEYAV 238

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 80.0 bits (198), Expect = 9e-18
 Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 12/140 (8%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
            G TALH+AA     ++V  LV+ G  +++++  G TAL +A              +G +
Sbjct: 110 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR 169

Query: 77  ANASITDHQGIQRDIAAA--GTSVLANCLLM-GEGQTALHIASAEGDEALVKYFYGAKAN 133
                   + +   +       + +   +   G+G+   ++   +             A 
Sbjct: 170 IG-----LEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224

Query: 134 ASITDHQDRTPMHLAAENGH 153
               D++    +  A     
Sbjct: 225 DVAKDYE--DGLEYAVAESV 242

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  106 bits (267), Expect = 2e-28
 Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 32/180 (17%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
           +    L  AAR    D VRIL+  G      +  G + LH+A+  G  +  +     G  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANA 134
            +A         R                   +T LH+A++EG   +V+    +GA  NA
Sbjct: 60  RDA---------RTK---------------VDRTPLHMAASEGHANIVEVLLKHGADVNA 95

Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
              D    T +H A E+ H  ++ELL     A +  ++K       ++     ED+ ++L
Sbjct: 96  --KDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  100 bits (252), Expect = 3e-26
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 34/178 (19%)

Query: 52  EGQTALHIASAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQ 109
           +    L  A+  G +  V+     GA                                G 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDW-------------------------LGT 35

Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
           + LH+A+  G  +  +    A  +       DRTP+H+AA  GHA+I+E+L     A + 
Sbjct: 36  SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH-GADVN 94

Query: 170 ERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
            +       LH A  ++ ++VV+LL+      + +         ++     ED+ ++L
Sbjct: 95  AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 96.3 bits (241), Expect = 1e-24
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 13/131 (9%)

Query: 107 EGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKF 164
           +    L  A+  G +  V+     GA       D    +P+HLAA+ GH S  E+L    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRA- 56

Query: 165 RASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVV 218
             S   RTK +   LH+AA     ++V++LL      N K +     LH A  ++ ++VV
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 219 KLLLNKKGINV 229
           +LL+ K G +V
Sbjct: 117 ELLI-KYGADV 126

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 94.8 bits (237), Expect = 4e-24
 Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 30/150 (20%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
            T   G + LHLAA+        +L+  G S D +    +T LH+A++EG   +V+    
Sbjct: 29  TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88

Query: 73  YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGA 130
           +GA  NA         +D+                  TALH A+    + +V+    YGA
Sbjct: 89  HGADVNA---------KDM---------------LKMTALHWATEHNHQEVVELLIKYGA 124

Query: 131 KANASITDHQDRTPMHLAAENGHASIIELL 160
             +        +T   ++ +NG+  + E+L
Sbjct: 125 DVHT--QSKFCKTAFDISIDNGNEDLAEIL 152

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  106 bits (266), Expect = 2e-27
 Identities = 42/210 (20%), Positives = 64/210 (30%), Gaps = 33/210 (15%)

Query: 18  INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
           +N    L  AA   +L++V+  V         N EG TALH A    + ++V +   A A
Sbjct: 19  LNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGA 78

Query: 78  NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
           N +  D                        G T LH A++  D  +        A    T
Sbjct: 79  NVNSPDS----------------------HGWTPLHCAASCNDTVICMALVQHGAAIFAT 116

Query: 138 DHQD-RTPMHLAA--ENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
              D  T          G+A     LAD    S+          L   +     D +   
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDYS-AEFGDELSFR 174

Query: 195 L------NKKGIENYNVLHLAAMYSREDVV 218
                   ++          AA++ +E  V
Sbjct: 175 EGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 91.2 bits (227), Expect = 7e-22
 Identities = 42/214 (19%), Positives = 67/214 (31%), Gaps = 35/214 (16%)

Query: 36  VRILVDYGTSVDIQN---GEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIA 92
           +R ++    S              L  A+  G+  +V+       + S  +         
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE-------- 52

Query: 93  AAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENG 152
                         EG TALH A    + ++V +   A AN +  D    TP+H AA   
Sbjct: 53  --------------EGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN 98

Query: 153 HASIIELLADKFRASIFERTKEN-YNVLHLAAMYSR--EDVVKLLLN---KKGIENYNVL 206
              I   L     A+IF  T  +          Y     D    L +     G+ N   +
Sbjct: 99  DTVICMALVQH-GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV 157

Query: 207 HLAAMYSRE--DVVKLLLNKKGINVAALGGEDLT 238
           +    YS E  D +      + + V    G + T
Sbjct: 158 YALWDYSAEFGDELSFREG-ESVTVLRRDGPEET 190

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 87.7 bits (218), Expect = 1e-20
 Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 26/143 (18%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNG-EGQTALHIASA--EGDEALVKYFYGA 75
           +G T LH AA   D  +   LV +G ++      +G TA        EG      Y    
Sbjct: 86  HGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV 145

Query: 76  KANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANAS 135
           + +  + +                           AL   SAE  +  + +  G      
Sbjct: 146 EQSMGLMNS----------------------GAVYALWDYSAEFGD-ELSFREGESVTVL 182

Query: 136 ITDHQDRTPMHLAAENGHASIIE 158
             D  + T    AA +G    + 
Sbjct: 183 RRDGPEETDWWWAALHGQEGYVP 205

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 28/147 (19%), Positives = 39/147 (26%), Gaps = 26/147 (17%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRD--LDMVRILVDYGTSVDIQNGEGQTALHIA 60
             L    A     T  +G TA       R+   D    L D   S+ + N     AL   
Sbjct: 104 MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY 163

Query: 61  SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
           SAE  +  + +  G        D                      G  +T    A+  G 
Sbjct: 164 SAEFGD-ELSFREGESVTVLRRD----------------------GPEETDWWWAALHGQ 200

Query: 121 EALVKYFY-GAKANASITDHQDRTPMH 146
           E  V   Y G          + +   H
Sbjct: 201 EGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  102 bits (257), Expect = 2e-27
 Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 26/147 (17%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
           NG T LHLAAR   L++V++L++ G  V+ ++  G+T LH+A+  G   +VK     GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
            NA   +                        G+T LH+A+  G   +VK    A A+ + 
Sbjct: 61  VNAKDKN------------------------GRTPLHLAARNGHLEVVKLLLEAGADVNA 96

Query: 137 TDHQDRTPMHLAAENGHASIIELLADK 163
            D   RTP+HLAA NGH  +++LL + 
Sbjct: 97  KDKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 95.1 bits (238), Expect = 1e-24
 Identities = 49/123 (39%), Positives = 64/123 (52%), Gaps = 7/123 (5%)

Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
           G+T LH+A+  G   +VK    A A+ +  D   RTP+HLAA NGH  +++LL +   A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAD 60

Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
           +  + K     LHLAA     +VVKLLL      N K       LHLAA     +VVKLL
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

Query: 222 LNK 224
           L  
Sbjct: 121 LEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.9 bits (183), Expect = 1e-16
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 22/112 (19%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
           A   NG T LHLAAR   L++V++L++ G  V+ ++  G+T LH+A+  G   +VK    
Sbjct: 30  AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKY 126
           A A+ +  D                        G+T LH+A+  G   +VK 
Sbjct: 90  AGADVNAKDK----------------------NGRTPLHLAARNGHLEVVKL 119

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 46.2 bits (111), Expect = 9e-07
 Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 179 LHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
           LHLAA     +VVKLLL      N K       LHLAA     +VVKLLL + G +V
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADV 61

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  106 bits (265), Expect = 4e-27
 Identities = 41/226 (18%), Positives = 65/226 (28%), Gaps = 41/226 (18%)

Query: 19  NGDTALHLA---ARKRDLDMVRILVDYGTSVDIQ-----------NGEGQTALHIASAEG 64
            G T L  A         D + +L+D     D               +GQTALHIA    
Sbjct: 53  TGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR 112

Query: 65  DEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALV 124
           +  LV       A+     +    +                  G+  L +A+     A+V
Sbjct: 113 NMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYF--------GELPLSLAACTNQLAIV 164

Query: 125 KYFY---GAKANASITDHQDRTPMHLAAENGHASIIELLA---------------DKFRA 166
           K+        A+ S  D    T +H   E    ++                         
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK 224

Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMY 212
                 ++    L LAA   +  V+  +L  + I      H AA +
Sbjct: 225 LEEITNRKGLTPLALAASSGKIGVLAYILQ-REIHEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  102 bits (255), Expect = 1e-25
 Identities = 45/261 (17%), Positives = 73/261 (27%), Gaps = 62/261 (23%)

Query: 14  KATTINGDTALHLAARKRDLDMVRILVDY-------GTSVDIQNGE-GQTALHIASA--- 62
           K   +    ++  A  + +   +  L+ +        T  + ++ E G+T L  A     
Sbjct: 7   KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH 66

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLM-GEGQTALHIASAEGDE 121
            G    +                       +    V A+      +GQTALHIA    + 
Sbjct: 67  NGQNDTIALLLDVAR------------KTDSLKQFVNASYTDSYYKGQTALHIAIERRNM 114

Query: 122 ALVKYF--YGAKANA------------SITDHQDRTPMHLAAENGHASIIELLADK--FR 165
            LV      GA   A                +    P+ LAA     +I++ L       
Sbjct: 115 TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP 174

Query: 166 ASIFERTKENYNVLHLAAMYSREDVVKLLLN-----------KKGIENYNV--------- 205
           A I  R      VLH     +   V                  K      +         
Sbjct: 175 ADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGL 234

Query: 206 --LHLAAMYSREDVVKLLLNK 224
             L LAA   +  V+  +L +
Sbjct: 235 TPLALAASSGKIGVLAYILQR 255

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 18/138 (13%)

Query: 20  GDTALHLAARKRDLDMVRILVDYGTS---VDIQNGEGQTALHIASAEGDEALVKYFYGAK 76
           G+  L LAA    L +V+ L+        +  ++  G T LH      D  +    +   
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMG-EGQTALHIASAEGDEALVKYFYGAKANAS 135
               I           A     L    +   +G T L +A++ G   ++ Y    + +  
Sbjct: 208 MYNEILIL-------GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-- 258

Query: 136 ITDHQDRTPMHLAAENGH 153
                +    H AA + H
Sbjct: 259 -----EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 28/129 (21%)

Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASI-------FERTKENYNVLHLA 182
             A        DR  +  A    +   +E L    + S        F+  +     L  A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 183 AMYSR---EDVVKLLL-----------------NKKGIENYNVLHLAAMYSREDVVKLLL 222
            +       D + LLL                      +    LH+A       +V LL+
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121

Query: 223 NKKGINVAA 231
            + G +V A
Sbjct: 122 -ENGADVQA 129

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 45/123 (36%)

Query: 15  ATTINGDTALHLAARKRDLDMVRI----------------LVDYGTSVDIQNGEGQTALH 58
           A    G+T LH      D  +                   L       +I N +G T L 
Sbjct: 179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA 238

Query: 59  IASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE 118
           +A++ G   ++ Y               +QR+I                     H A+  
Sbjct: 239 LAASSGKIGVLAYI--------------LQREI---------------HEPECRHAAAHH 269

Query: 119 GDE 121
              
Sbjct: 270 HHH 272

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  102 bits (257), Expect = 7e-27
 Identities = 44/185 (23%), Positives = 66/185 (35%), Gaps = 35/185 (18%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDI--QNGEGQTALHIASAEGDEALVKYF--YG 74
             D  L  AA+  D++ V+ L     SV+     G   T LH A+     ++V+Y   +G
Sbjct: 7   EADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKA 132
           A  +A   D                        G   LH A + G   + +    +GA  
Sbjct: 66  ADVHA--KDK----------------------GGLVPLHNACSYGHYEVAELLVKHGAVV 101

Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
           N    D    TP+H AA  G   I +LL     A   ++ ++    L L       D+  
Sbjct: 102 NV--ADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVK-DGDTDIQD 157

Query: 193 LLLNK 197
           LL   
Sbjct: 158 LLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 95.1 bits (238), Expect = 4e-24
 Identities = 43/186 (23%), Positives = 60/186 (32%), Gaps = 39/186 (20%)

Query: 50  NGEGQTALHIASAEGDEALVKYF---YGAKANASITDHQGIQRDIAAAGTSVLANCLLMG 106
           N E    L  A+  GD   VK                      +               G
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD---------IE---------------G 40

Query: 107 EGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKF 164
              T LH A+     ++V+Y   +GA  +A   D     P+H A   GH  + ELL    
Sbjct: 41  RQSTPLHFAAGYNRVSVVEYLLQHGADVHA--KDKGGLVPLHNACSYGHYEVAELLVKH- 97

Query: 165 RASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVV 218
            A +       +  LH AA   + ++ KLLL       KK  +    L L       D+ 
Sbjct: 98  GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQ 156

Query: 219 KLLLNK 224
            LL   
Sbjct: 157 DLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 91.7 bits (229), Expect = 9e-23
 Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 11/131 (8%)

Query: 107 EGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKF 164
           E    L  A+  GD   VK      +  N    + +  TP+H AA     S++E L    
Sbjct: 7   EADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH- 64

Query: 165 RASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVV 218
            A +  + K     LH A  Y   +V +LL+      N   +  +  LH AA   + ++ 
Sbjct: 65  GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124

Query: 219 KLLLNKKGINV 229
           KLLL + G + 
Sbjct: 125 KLLL-QHGADP 134

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 85.5 bits (213), Expect = 2e-20
 Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 32/161 (19%)

Query: 4   LLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAE 63
           L + Q+    +       T LH AA    + +V  L+ +G  V  ++  G   LH A + 
Sbjct: 27  LCTVQSVN-CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY 85

Query: 64  GDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDE 121
           G   + +    +GA  N +                             T LH A+A+G  
Sbjct: 86  GHYEVAELLVKHGAVVNVADLW------------------------KFTPLHEAAAKGKY 121

Query: 122 ALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELL 160
            + K    +GA       +    TP+ L   +G   I +LL
Sbjct: 122 EICKLLLQHGADPTK--KNRDGNTPLDLVK-DGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 72.8 bits (180), Expect = 7e-16
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 12/107 (11%)

Query: 129 GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRE 188
           GA  N+     +    +  AA+ G    ++ L      +  +        LH AA Y+R 
Sbjct: 1   GAMGNS-----EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRV 55

Query: 189 DVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
            VV+ LL      + K       LH A  Y   +V +LL+ K G  V
Sbjct: 56  SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVV 101

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 65.5 bits (161), Expect = 3e-13
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 29/120 (24%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
           A    G   LH A      ++  +LV +G  V++ +    T LH A+A+G   + K    
Sbjct: 70  AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129

Query: 73  YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGA 130
           +GA             ++                +G T L +   +GD  +        A
Sbjct: 130 HGADPTK---------KNR---------------DGNTPLDLV-KDGDTDIQDLLRGDAA 164

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  100 bits (252), Expect = 3e-26
 Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 28/177 (15%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
           ++       L  AA +  ++ VR L++ G + +  N  G+  + +    G   + +    
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLL 65

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
             A  +  D                            +H A+ EG    +   + A A  
Sbjct: 66  HGAEPNCADPAT---------------------LTRPVHDAAREGFLDTLVVLHRAGARL 104

Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
            + D   R P+ LA E GH  +   L                    + A     D+ 
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNH-----ARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 88.3 bits (220), Expect = 1e-21
 Identities = 30/176 (17%), Positives = 49/176 (27%), Gaps = 26/176 (14%)

Query: 45  SVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLL 104
           +           L  A+A G    V+    A AN +  +                     
Sbjct: 4   AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNS-------------------- 43

Query: 105 MGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRT-PMHLAAENGHASIIELLADK 163
              G+  + +    G   + +      A  +  D    T P+H AA  G    + +L   
Sbjct: 44  --YGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA 100

Query: 164 FRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK-GIENYNVLHLAAMYSREDVV 218
             A +  R       + LA      DV + L     G    N   + A     D+ 
Sbjct: 101 -GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 84.5 bits (210), Expect = 3e-20
 Identities = 26/125 (20%), Positives = 40/125 (32%), Gaps = 9/125 (7%)

Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
                L  A+A G    V+    A AN +  +   R P+ +    G A + ELL     A
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLH-GA 68

Query: 167 SIFERTKENYNV-LHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVK 219
                        +H AA     D + +L       + +       + LA      DV +
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128

Query: 220 LLLNK 224
            L   
Sbjct: 129 YLRAA 133

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 80.2 bits (199), Expect = 1e-18
 Identities = 19/147 (12%), Positives = 40/147 (27%), Gaps = 33/147 (22%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQT-ALHIASAEGDEALVKYFY 73
           A    G   + +        +  +L+ +G   +  +    T  +H A+ EG    +   +
Sbjct: 40  APNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH 98

Query: 74  GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAK 131
            A A   + D                        G+  + +A   G   + +Y       
Sbjct: 99  RAGARLDVRDA----------------------WGRLPVDLAEELGHRDVARYLRAAAGG 136

Query: 132 ANASITDHQDRTPMHLAAENGHASIIE 158
                          + A  G + I +
Sbjct: 137 TRG-------SNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 62.1 bits (152), Expect = 4e-12
 Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 9/101 (8%)

Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV 190
           +  A  +       +  AA  G    +  L +   A+           + +  M S   V
Sbjct: 2   EPAAGSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMMMGSAR-V 59

Query: 191 VKLLL------NKKGIENYNV-LHLAAMYSREDVVKLLLNK 224
            +LLL      N          +H AA     D + +L   
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA 100

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 99.4 bits (249), Expect = 5e-26
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 26/149 (17%)

Query: 14  KATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF- 72
             T   G+T LH+A+ K D+  V  L+  G+  ++++  G T LH A   G   +V+   
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63

Query: 73  -YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
            + A  N +                             + LH A+  G   +VK      
Sbjct: 64  QHKALVNTTGYQ------------------------NDSPLHDAAKNGHVDIVKLLLSYG 99

Query: 132 ANASITDHQDRTPMHLAAENGHASIIELL 160
           A+ +  +     P+    +    S++ L 
Sbjct: 100 ASRNAVNIFGLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 92.5 bits (231), Expect = 2e-23
 Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 7/129 (5%)

Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
           G+T LHIAS +GD   V+Y     ++ ++ DH   TP+H A  +GH  ++ELL    +A 
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-KAL 68

Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
           +     +N + LH AA     D+VKLLL      N   I     +      S + ++ L 
Sbjct: 69  VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128

Query: 222 LNKKGINVA 230
              +  + +
Sbjct: 129 EKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 88.6 bits (221), Expect = 6e-22
 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 23/147 (15%)

Query: 50  NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQ 109
           N  G+T LHIAS +GD   V+Y     ++ ++ DH                       G 
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH----------------------AGW 44

Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
           T LH A   G   +V+     KA  + T +Q+ +P+H AA+NGH  I++LL     AS  
Sbjct: 45  TPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRN 103

Query: 170 ERTKENYNVLHLAAMYSREDVVKLLLN 196
                    +      S + ++ L   
Sbjct: 104 AVNIFGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 73.6 bits (182), Expect = 2e-16
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 11/107 (10%)

Query: 129 GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRE 188
           G       T+H+  T +H+A+  G    +E L     +    +    +  LH A  +   
Sbjct: 1   GIDPF---TNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHL 56

Query: 189 DVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
            VV+LLL      N  G +N + LH AA     D+VKLLL   G + 
Sbjct: 57  KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL-SYGASR 102

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 96.4 bits (241), Expect = 6e-25
 Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 22/146 (15%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
               + D  L  AA +  ++ VR L++ G   +  N  G+  + +    G   + +    
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVAELLLL 65

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
             A  +  D                            +H A+ EG    +   + A A  
Sbjct: 66  HGAEPNCADPAT---------------------LTRPVHDAAREGFLDTLVVLHRAGARL 104

Query: 135 SITDHQDRTPMHLAAENGHASIIELL 160
            + D   R P+ LA E GH  I   L
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 87.1 bits (217), Expect = 2e-21
 Identities = 24/156 (15%), Positives = 44/156 (28%), Gaps = 25/156 (16%)

Query: 43  GTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANC 102
              + +  G     L  A+A G    V+    A A+ +  +                   
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR------------------ 43

Query: 103 LLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRT-PMHLAAENGHASIIELLA 161
                G+  + +    G   + +      A  +  D    T P+H AA  G    + +L 
Sbjct: 44  ----FGRRPIQVM-MMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH 98

Query: 162 DKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK 197
               A +          + LA      D+ + L   
Sbjct: 99  RA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 87.1 bits (217), Expect = 2e-21
 Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 9/125 (7%)

Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
                L  A+A G    V+    A A+ +  +   R P+ +    G A + ELL     A
Sbjct: 11  SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLH-GA 68

Query: 167 SIFERTKENYNV-LHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVK 219
                        +H AA     D + +L       +         + LA      D+ +
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128

Query: 220 LLLNK 224
            L   
Sbjct: 129 YLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 63.2 bits (155), Expect = 1e-12
 Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 9/102 (8%)

Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRED 189
                 +        +  AA  G    +  L +   A      +     + +        
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMM-MGSAQ 58

Query: 190 VVKLLL------NKKGIENYNV-LHLAAMYSREDVVKLLLNK 224
           V +LLL      N          +H AA     D + +L   
Sbjct: 59  VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA 100

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 95.5 bits (239), Expect = 1e-24
 Identities = 27/142 (19%), Positives = 44/142 (30%), Gaps = 26/142 (18%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
             D     A +  DLD V+  V  G  V+     G+  LH A+  G   ++++    GA 
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
            NA                              T L  A  EG  + VK      A+ ++
Sbjct: 66  INAPDKH------------------------HITPLLSAVYEGHVSCVKLLLSKGADKTV 101

Query: 137 TDHQDRTPMHLAAENGHASIIE 158
                 T           ++++
Sbjct: 102 KGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 87.5 bits (218), Expect = 1e-21
 Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 7/118 (5%)

Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
                  A   GD   VK +     + + T    R P+H AA+ G   I+E L  K  A 
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GAD 65

Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVK 219
           I    K +   L  A        VKLLL        KG +           + + +++
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 82.1 bits (204), Expect = 1e-19
 Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 23/143 (16%)

Query: 50  NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQ 109
                     A   GD   VK +     + + T                         G+
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE----------------------GGR 41

Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
             LH A+  G   ++++     A+ +  D    TP+  A   GH S ++LL  K  A   
Sbjct: 42  KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKT 100

Query: 170 ERTKENYNVLHLAAMYSREDVVK 192
            +  +           + + +++
Sbjct: 101 VKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 72.4 bits (179), Expect = 4e-16
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 22/111 (19%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
            T   G   LH AA    L+++  L+  G  ++  +    T L  A  EG  + VK    
Sbjct: 35  RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS 94

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK 125
             A+ ++                         +G TA      +  +AL++
Sbjct: 95  KGADKTVKGP----------------------DGLTAFEATDNQAIKALLQ 123

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 97.2 bits (242), Expect = 6e-24
 Identities = 33/236 (13%), Positives = 60/236 (25%), Gaps = 51/236 (21%)

Query: 19  NGDTALHLAA---RKRDLDMVRILVDYG-----------TSVDIQNGEGQTALHIASAEG 64
            G T L  A    +      +  L+                   +  +G +ALHIA  + 
Sbjct: 42  TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR 101

Query: 65  DEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALV 124
               VK      A+  +       +                  G+  L +A+      +V
Sbjct: 102 SLQCVKLLVENGADVHLRACGRFFQKHQGTCF---------YFGELPLSLAACTKQWDVV 152

Query: 125 KY---FYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHL 181
            Y        A+   TD    T +H                              + L +
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALVMIAD------------------NSPENSALVI 194

Query: 182 AAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
                   +   L            +    L LAA   + ++ + +L  +  + AA
Sbjct: 195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ-REFSGAA 249

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 83.3 bits (206), Expect = 7e-19
 Identities = 28/161 (17%), Positives = 46/161 (28%), Gaps = 42/161 (26%)

Query: 6   STQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGT---SVDIQNGEGQTALHIASA 62
                +        G+  L LAA  +  D+V  L++      S++  +  G T LH    
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
             D                                            +AL I   +G   
Sbjct: 182 IADN---------------------------------------SPENSALVIHMYDGLLQ 202

Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK 163
           +            I++HQ  TP+ LAA+ G   I   +  +
Sbjct: 203 MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 63.3 bits (154), Expect = 9e-12
 Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 41/173 (23%)

Query: 108 GQTALHIASAEGDEALVKYF--YGAKANASITDHQD------RTPMHLAA---ENGHASI 156
            +  L    + G    +     Y    +  +TD         +T +  A    ++G  + 
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 157 IELLADKFR----------ASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGI 200
           I  L    +          A   +   + ++ LH+A        VKLL+      + +  
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 201 ENYNV-------------LHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGR 240
             +               L LAA   + DVV  LL +     A+L   D  G 
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL-ENPHQPASLEATDSLGN 173

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 15/74 (20%), Positives = 29/74 (39%)

Query: 13  LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
           + A     ++AL +      L M   L       +I N +G T L +A+ EG   + ++ 
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

Query: 73  YGAKANASITDHQG 86
              + + +   H  
Sbjct: 241 LQREFSGAAAHHHH 254

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 91.3 bits (228), Expect = 6e-23
 Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 26/155 (16%)

Query: 8   QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA 67
           + +        +    L  AAR    D VRIL+  G  V+ ++  G T L++A+A G   
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61

Query: 68  LVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK 125
           +V+     GA  NA          D                 G T LH+A+  G   + +
Sbjct: 62  IVEVLLKNGADVNA---------VDA---------------IGFTPLHLAAFIGHLEIAE 97

Query: 126 YFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
                 A+ +  D   +T   ++  NG+  + E+L
Sbjct: 98  VLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 87.1 bits (217), Expect = 2e-21
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
               L  A+  G +  V+      A+ +  D    TP++LA  +GH  I+E+L     A 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN-GAD 72

Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
           +       +  LHLAA     ++ ++LL      N +         ++     ED+ ++L
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

Query: 222 L 222
            
Sbjct: 133 Q 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 80.5 bits (200), Expect = 5e-19
 Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 32/158 (20%)

Query: 43  GTSVDIQNG-EGQTALHIASAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVL 99
           G+     +G +    L  A+  G +  V+     GA  NA         +D         
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNA---------KDE-------- 45

Query: 100 ANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASII 157
                   G T L++A+A G   +V+     GA  NA   D    TP+HLAA  GH  I 
Sbjct: 46  -------YGLTPLYLATAHGHLEIVEVLLKNGADVNA--VDAIGFTPLHLAAFIGHLEIA 96

Query: 158 ELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
           E+L     A +  + K       ++     ED+ ++L 
Sbjct: 97  EVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 143 TPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------N 196
             +  AA  G    + +L     A +  + +     L+LA  +   ++V++LL      N
Sbjct: 16  KKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74

Query: 197 KKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
                 +  LHLAA     ++ ++LL K G +V
Sbjct: 75  AVDAIGFTPLHLAAFIGHLEIAEVLL-KHGADV 106

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 92.4 bits (230), Expect = 7e-23
 Identities = 20/198 (10%), Positives = 46/198 (23%), Gaps = 37/198 (18%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGE---GQTALHIASAEGDEALVKY 71
           +  ++    +  AA     +    L + G        +       L   + E    +  +
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 72  FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG------DEALVK 125
                A+                            EG T        G         L K
Sbjct: 61  LINKGADIKSRTK----------------------EGTTLFFPLFQGGGNDITGTTELCK 98

Query: 126 YFYGAKANASITDHQDRTPMHLAAENGHAS------IIELLADKFRASIFERTKENYNVL 179
            F    A+ +      +  +     N          + +L+  +    +  + K     L
Sbjct: 99  IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158

Query: 180 HLAAMYSREDVVKLLLNK 197
                  +   +K++ + 
Sbjct: 159 EFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 79.3 bits (196), Expect = 5e-18
 Identities = 20/197 (10%), Positives = 46/197 (23%), Gaps = 40/197 (20%)

Query: 52  EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTA 111
                +  A+  G        +        +  +               + +L       
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLK---------------SNILY----DV 45

Query: 112 LHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASI------IELLADKFR 165
           L   + E    +  +     A+      +  T      + G   I       ++  +K  
Sbjct: 46  LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-G 104

Query: 166 ASIFERTKENYNVLHLAAMYSRED------VVKLLLNKKGI-------ENYNVLHLAAMY 212
           A I    K    V+         D      + KL+ ++ G+            L      
Sbjct: 105 ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164

Query: 213 SREDVVKLLLNKKGINV 229
            +   +K++        
Sbjct: 165 QKPIALKMME-DYIKKY 180

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 65.5 bits (160), Expect = 5e-13
 Identities = 16/128 (12%), Positives = 30/128 (23%), Gaps = 23/128 (17%)

Query: 15  ATTINGDTALHLAARK------RDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEAL 68
           + T  G T      +          ++ +I ++ G  +       +  +           
Sbjct: 70  SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE 129

Query: 69  VKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF- 127
            +     K    I    G+   +                G TAL           +K   
Sbjct: 130 NEMIPLYKL---IFSQSGL--QLLIKDK----------WGLTALEFVKRCQKPIALKMME 174

Query: 128 -YGAKANA 134
            Y  K N 
Sbjct: 175 DYIKKYNL 182

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 11/50 (22%), Positives = 25/50 (50%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQN 50
           +++L+ +Q+  QL      G TAL    R +    ++++ DY    +++ 
Sbjct: 135 LYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 95.0 bits (236), Expect = 2e-22
 Identities = 29/234 (12%), Positives = 63/234 (26%), Gaps = 22/234 (9%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQN--GEGQTALHIA 60
            L      E +         A  LAA    L ++  L +   +        E   A   A
Sbjct: 146 RLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

Query: 61  SAE-GDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG 119
           +   G   ++ +        +  +    +         +  +   + E   A  +++ +G
Sbjct: 206 AVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDG 265

Query: 120 DEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL-------ADKFRASIFERT 172
              LV      +             +          +++ +         K  A      
Sbjct: 266 VFDLVTKSECLQGF---------YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP 316

Query: 173 KENYNVLHLAAMYSREDVVKLLLNKKGIENY---NVLHLAAMYSREDVVKLLLN 223
            +   +L LA     +    LLL+   +      N  ++     R D+  + L 
Sbjct: 317 GDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 87.3 bits (216), Expect = 1e-19
 Identities = 35/247 (14%), Positives = 71/247 (28%), Gaps = 50/247 (20%)

Query: 8   QTAEQLKATTINGDTALHLAAR---KRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEG 64
           Q         I  +    +AA       LD + +L+     V +   E   A  +A+  G
Sbjct: 80  QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 139

Query: 65  DEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALV 124
              ++           +   Q                     E   A  +A+  G   ++
Sbjct: 140 HLHVLNRLCELAPTEIMAMIQ--------------------AENYHAFRLAAENGHLHVL 179

Query: 125 KYFY--GAKANASITDHQDRTPMHLAA-ENGHASIIELLAD------------------- 162
                       ++   ++      AA   GH ++I  L D                   
Sbjct: 180 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY 239

Query: 163 --KFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKL 220
              F A    R KE ++   L+   + + V  L+   + ++ + +L      + E ++  
Sbjct: 240 VNPFIARHVNRLKEMHDAFKLS---NPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDD 296

Query: 221 LLNKKGI 227
           +     I
Sbjct: 297 IRFLLSI 303

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 90.6 bits (225), Expect = 2e-21
 Identities = 35/216 (16%), Positives = 63/216 (29%), Gaps = 40/216 (18%)

Query: 19  NGDTALHLAA---RKRDLDMVRILVDYGTSVDI-----------QNGEGQTALHIASAEG 64
            G T L  A         D + IL+D                      GQTALHIA    
Sbjct: 45  TGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERR 104

Query: 65  DEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALV 124
            +  V+      A+          +     G            G+  L +A+      +V
Sbjct: 105 CKHYVELLVEKGADVHAQARGRFFQPKDEGG--------YFYFGELPLSLAACTNQPHIV 156

Query: 125 KYF---YGAKANASITDHQDRTPMHLAAENGHAS-------------IIELLADKFRASI 168
            Y       +A+    D +  T +H        +             ++   A  F  + 
Sbjct: 157 HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN 216

Query: 169 FERTKENYNV--LHLAAMYSREDVVKLLLNKKGIEN 202
            E    N  +  L +AA   +  + + ++ ++  + 
Sbjct: 217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 68.3 bits (167), Expect = 2e-13
 Identities = 31/201 (15%), Positives = 55/201 (27%), Gaps = 60/201 (29%)

Query: 53  GQTALHIASAEGD----EALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEG 108
            +  L    + G     E L+ +    K   +  + +                      G
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPS------------------TG 46

Query: 109 QTALHIA---SAEGDEALVKYFYGAKA---------NASITDHQDR--TPMHLAAENGHA 154
           +T L  A    + G    +                 N+   D   R  T +H+A E    
Sbjct: 47  KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106

Query: 155 SIIELLADKFRASIFERTKENYNV--------------LHLAAMYSREDVVKLLL----- 195
             +ELL +K  A +  + +  +                L LAA  ++  +V  L      
Sbjct: 107 HYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165

Query: 196 ----NKKGIENYNVLHLAAMY 212
                ++      VLH     
Sbjct: 166 QADLRRQDSRGNTVLHALVAI 186

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 67.1 bits (164), Expect = 4e-13
 Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 11/132 (8%)

Query: 14  KATTINGDTALHLAARKRDLDMVRILVDYGTS---VDIQNGEGQTALHIASAEGDEALVK 70
                 G+  L LAA      +V  L + G     +  Q+  G T LH   A  D     
Sbjct: 134 GGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTREN 193

Query: 71  YFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--Y 128
             +  K    +      +        ++L N     +G + L +A+  G   + ++    
Sbjct: 194 TKFVTKMYDLLLIK-CAKLFPDTNLEALLNN-----DGLSPLMMAAKTGKIGIFQHIIRR 247

Query: 129 GAKANASITDHQ 140
                A+   H 
Sbjct: 248 EIADAAAHHHHH 259

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 83.5 bits (206), Expect = 1e-18
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 32/196 (16%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGD-------EALVKY 71
           +G+T LH      +L++V+ LV +G++    +  G++ L  A    +       EAL+ Y
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 189

Query: 72  FYG---------------AKANASITDHQGIQRDIAAAGTSVLANCL---------LMGE 107
            Y                    + +T      +         +                 
Sbjct: 190 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 249

Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
                +    +     +   +      +  D    T +++AA  G+ SI++ L D   A 
Sbjct: 250 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GAD 308

Query: 168 IFERTKENYNVLHLAA 183
            F   K     +   A
Sbjct: 309 PFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 77.0 bits (189), Expect = 3e-16
 Identities = 37/251 (14%), Positives = 80/251 (31%), Gaps = 54/251 (21%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQ-NGEGQTALHIAS 61
             L+  ++ +      +     H++      ++     +   +++I  +  G T LH  +
Sbjct: 80  TSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLT 139

Query: 62  AEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD- 120
           +  +  LVK+     +N    D+                       G++ L  A    + 
Sbjct: 140 SIANLELVKHLVKHGSNRLYGDN----------------------MGESCLVKAVKSVNN 177

Query: 121 ------EALVKYFYGAKANASITDHQDRTPMHLAAENGHAS------------IIELLAD 162
                 EAL+ Y Y       + D  +RT +H        +            ++  +  
Sbjct: 178 YDSGTFEALLDYLY---PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234

Query: 163 KFRASIFERTKENYNVLHLAAMYSREDVVKLL---------LNKKGIENYNVLHLAAMYS 213
           K    I   T E  +  +      ++ +++ L         LN +       L++AA   
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294

Query: 214 REDVVKLLLNK 224
              +V  LL+ 
Sbjct: 295 NISIVDALLDY 305

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 69.3 bits (169), Expect = 1e-13
 Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 31/164 (18%)

Query: 19  NGDTALHLAARKR---DLDMVRILVDY-GTSVDIQNGEGQTALHIA----SAEGDEALVK 70
            G++ L  A +     D      L+DY    + +++   +T LH         G  A  K
Sbjct: 163 MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK 222

Query: 71  YF----------YGAKANASITDHQGIQRDIAAAGTSVLANCLLMG-------------E 107
           Y+             +   S T+ +  + +             L                
Sbjct: 223 YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN 282

Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAEN 151
           G T L+IA+  G+ ++V       A+  I +     P+   A  
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 62.0 bits (150), Expect = 4e-11
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGD 65
           NGDT L++AAR  ++ +V  L+DYG    I N  G   +    A  +
Sbjct: 282 NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG-AGLE 327

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 49.3 bits (117), Expect = 5e-07
 Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 27/110 (24%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTS----VDIQNGEGQTALHIASAEGDEALVK 70
            +  N   +          D +   +D        ++ Q+  G T L+IA+  G+ ++V 
Sbjct: 241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 300

Query: 71  YFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
                 A+  I +                        G   +    A  +
Sbjct: 301 ALLDYGADPFIANK----------------------SGLRPVDFG-AGLE 327

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 77.8 bits (193), Expect = 2e-18
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
           G+T LH+A+  G   +VK    A A+ +  D   RTP+HLAA NGH  +++LL +   A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAD 60

Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLLNK 197
           +  + K     LHLAA     +VVKLLL  
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 73.5 bits (182), Expect = 8e-17
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 22/108 (20%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
           NG T LHLAAR   L++V++L++ G  V+ ++  G+T LH+A+  G   +VK    A A+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKY 126
            +  D                        G+T LH+A+  G   +VK 
Sbjct: 61  VNAKDK----------------------NGRTPLHLAARNGHLEVVKL 86

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 59.3 bits (145), Expect = 1e-11
 Identities = 23/57 (40%), Positives = 36/57 (63%)

Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
          A   NG T LHLAAR   L++V++L++ G  V+ ++  G+T LH+A+  G   +VK 
Sbjct: 30 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 78.2 bits (194), Expect = 3e-18
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 7/107 (6%)

Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
           +G T LH A+  G    VK      A+ +       TP+HLAA+NGHA I++LL  K  A
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-GA 66

Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLH 207
            +  R+K+     HLA      ++VKLL       N +   + +  H
Sbjct: 67  DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 77.0 bits (191), Expect = 6e-18
 Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 26/130 (20%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
           +G+T LH AA+    + V+ L+  G  V+ ++ +G T LH+A+  G   +VK     GA 
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
            NA   D                        G T  H+A   G   +VK      A+ + 
Sbjct: 68  VNARSKD------------------------GNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

Query: 137 TDHQDRTPMH 146
                    H
Sbjct: 104 RSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 73.2 bits (181), Expect = 2e-16
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 23/134 (17%)

Query: 47  DIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMG 106
              + +G T LH A+  G    VK      A+ +                          
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK---------------------- 40

Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
           +G T LH+A+  G   +VK      A+ +       TP HLA +NGH  I++LL  K  A
Sbjct: 41  DGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GA 99

Query: 167 SIFERTKENYNVLH 180
            +  R+  + +  H
Sbjct: 100 DVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 70.9 bits (175), Expect = 1e-15
 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 134 ASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKL 193
                    TP+H AA+NGHA  ++ L  K  A +  R+K+    LHLAA     ++VKL
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 194 LL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
           LL      N +  +     HLA      ++VKLL   KG +V
Sbjct: 61  LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD-AKGADV 101

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 61.2 bits (150), Expect = 3e-12
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
           A + +G+T LHLAA+    ++V++L+  G  V+ ++ +G T  H+A   G   +VK    
Sbjct: 37  ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96

Query: 73  YGAKANA 79
            GA  NA
Sbjct: 97  KGADVNA 103

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALH 58
           A + +G+T  HLA +    ++V++L   G  V+ ++       H
Sbjct: 70  ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 74.5 bits (184), Expect = 6e-17
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 25/134 (18%)

Query: 27  AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
            +          LV  G+ +     +    L  A+  G +  V+      A+ +  D   
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK-- 55

Query: 87  IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
                                G T LH+A+  G   +VK    A A+    D   +T   
Sbjct: 56  --------------------NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD 95

Query: 147 LAAENGHASIIELL 160
           ++ +NG+  + E+L
Sbjct: 96  ISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 70.7 bits (174), Expect = 1e-15
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
               L  A+  G +  V+      A+ +  D    TP+HLAA NGH  +++LL +   A 
Sbjct: 24  LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GAD 82

Query: 168 IFERTKENYNVLHLAAMYSREDVVKLL 194
           +  + K       ++     ED+ ++L
Sbjct: 83  VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 66.8 bits (164), Expect = 3e-14
 Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 14/115 (12%)

Query: 115 ASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERT 172
            S+             G+   +          +  AA  G    + +L     A +  + 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS-----DLGKKLLEAARAGQDDEVRILMAN-GADVAAKD 54

Query: 173 KENYNVLHLAAMYSREDVVKLLLNK------KGIENYNVLHLAAMYSREDVVKLL 221
           K     LHLAA     +VVKLLL        +         ++     ED+ ++L
Sbjct: 55  KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 65.7 bits (161), Expect = 8e-14
 Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 22/109 (20%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
           +    L  AAR    D VRIL+  G  V  ++  G T LH+A+  G   +VK    A A+
Sbjct: 23  DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF 127
               D                        G+TA  I+   G+E L +  
Sbjct: 83  VXAQDK----------------------FGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 11/97 (11%)

Query: 148 AAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIE 201
            + + H      L  +  + +     +    L  AA   ++D V++L+        K   
Sbjct: 1   GSSHHHHHHSSGLVPR-GSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 202 NYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLT 238
               LHLAA     +VVKLLL + G +V A      T
Sbjct: 57  GSTPLHLAARNGHLEVVKLLL-EAGADVXAQDKFGKT 92

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
           A   NG T LHLAAR   L++V++L++ G  V  Q+  G+TA  I+   G+E L +  
Sbjct: 52  AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 61.9 bits (150), Expect = 3e-11
 Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 19/111 (17%)

Query: 50  NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQ 109
           +   +TALH+A    D   +        N+   D Q                    G+G 
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-------------------TGKGS 206

Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
           TALH      +   +K     KA+  I +    TP+ +A    H    ELL
Sbjct: 207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 60.0 bits (145), Expect = 1e-10
 Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 25/118 (21%)

Query: 19  NGDTALHLAARKRD---LDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
             +TALHLA R  D   L +V  LV    ++D Q G+G TALH      +   +K     
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227

Query: 76  KANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
           KA+  I +                        G+T L IA     E   +    A + 
Sbjct: 228 KASIEIANE----------------------SGETPLDIAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           I + L  Q +  L   T  G TALH      + + +++L+    S++I N  G+T L IA
Sbjct: 187 IVDFL-VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245

Query: 61  SAEGDEALVKYFYGAKANASITDHQGIQRD 90
                E   +    A +      H  ++ +
Sbjct: 246 KRLKHEHCEELLTQALSGRF-NSHVHVEYE 274

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 133 NASITDHQDRTPMHLAAENG---HASIIELLADKFRASIFERTKENYNVLHLAAMYSRED 189
             +     D T +HLA  +       I++ L      ++ ++T +    LH   +    +
Sbjct: 161 PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAE 219

Query: 190 VVKLLL-NKKGIENYNV-----LHLAAMYSREDVVKLLLN 223
            +KLLL  K  IE  N      L +A     E   +LL  
Sbjct: 220 CLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 58.5 bits (141), Expect = 5e-10
 Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 39/149 (26%)

Query: 25  HLAARKRDLDMVRILVDYGTSVDIQNGE------GQTALHIASAEGD-------EALVKY 71
             A   RDL  V      G                +  LH+A    +       + +++ 
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 72  FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
             G   +A                           +G TALH A+       +K     +
Sbjct: 216 --GGHLDA------------------------KAADGNTALHYAALYNQPDCLKLLLKGR 249

Query: 132 ANASITDHQDRTPMHLAAENGHASIIELL 160
           A     +    T + +A +  H    ELL
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 56.5 bits (136), Expect = 3e-09
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 25/117 (21%)

Query: 20  GDTALHLAARKRD---LDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAK 76
            +  LHLA +  +   L +V  ++  G  +D +  +G TALH A+       +K     +
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
           A     +                        G+TAL IA  +  +   +    A+A 
Sbjct: 250 ALVGTVN----------------------EAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           + +  Q    L A   +G+TALH AA     D +++L+     V   N  G+TAL IA  
Sbjct: 210 DFI-IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268

Query: 63  EGDEALVKYFYGAKAN 78
           +  +   +    A+A 
Sbjct: 269 KHHKECEELLEQAQAG 284

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 39/150 (26%)

Query: 24  LHLAARKRDLDMVRIL----VDYGTSVDIQNGE--GQTALHIASAEGD-------EALVK 70
           L  A   RDL  V        D+G  +   + +   +  LH+A    +       + +++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 71  YFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGA 130
                  +       G                       TALH A+       +K     
Sbjct: 196 N----GGHLDAKAADG----------------------NTALHYAALYNQPDCLKLLLKG 229

Query: 131 KANASITDHQDRTPMHLAAENGHASIIELL 160
           +A     +    T + +A +  H    ELL
Sbjct: 230 RALVGTVNEAGETALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 112 LHIASAEGDEALVKYFY--GAKANASI----TDHQDRTPMHLAAENGHAS---IIELLAD 162
           L  A    D   V   +  G      +        +   +HLA +  + +   +++ +  
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII- 194

Query: 163 KFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK 198
           +    +  +  +    LH AA+Y++ D +KLLL  +
Sbjct: 195 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 230

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 24/157 (15%)

Query: 6   STQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNG--EGQTALHIASAE 63
             +   +   +   G      +     L  +   + +G  V+  NG  +  T L  A+A 
Sbjct: 186 KPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA 245

Query: 64  GDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEAL 123
                 ++     AN +  D                        G+  LH A+  G   L
Sbjct: 246 NSLLACEFLLQNGANVNQADS----------------------AGRGPLHHATILGHTGL 283

Query: 124 VKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
              F    A+    D + R P+ +A E  +A I+ LL
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 7/100 (7%)

Query: 129 GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRE 188
           GA  N       + TP+  A         E L  +  A++ +        LH A +    
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLL-QNGANVNQADSAGRGPLHHATILGHT 281

Query: 189 DVVKLLLNKK---GIENYN---VLHLAAMYSREDVVKLLL 222
            +  L L +    G  +      L +A   +  D+V LL 
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 38/312 (12%), Positives = 91/312 (29%), Gaps = 67/312 (21%)

Query: 1   IWELLS--TQTAEQLKATTINGD-----TALHLAARKRDLDMVRILVDYGTSVDIQNGEG 53
            W LLS   +  ++     +  +     + +    R+  +        Y    D    + 
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM----YIEQRDRLYNDN 123

Query: 54  Q--TALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTA 111
           Q     +++  +    L +     +   ++    G+      +G + +A  + +      
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-GV----LGSGKTWVALDVCLSYKVQC 178

Query: 112 --------LHIASAEGDEALVK-----YFYGAKANASITDHQDRTPMHLAAENGHASIIE 158
                   L++ +    E +++      +       S +DH     +           I 
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR----------IH 228

Query: 159 LLADKFRASIFERTKEN--------YNVLHLAA--------MYSREDVVKLLLNKKGIEN 202
            +  + R  +  +  EN         N     A        + +R   V   L+     +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 203 YNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYL---------Y 253
            ++ H +   + ++V  LLL         L  E LT  P   +  +   +         +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNW 347

Query: 254 QVYLISKQQTAV 265
           +     K  T +
Sbjct: 348 KHVNCDKLTTII 359

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.98
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.89
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-49  Score=341.18  Aligned_cols=304  Identities=23%  Similarity=0.286  Sum_probs=225.0

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcc
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI   81 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~   81 (315)
                      +++|++++ .+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus        30 v~~Ll~~g-~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  108 (437)
T 1n11_A           30 VKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL  108 (437)
T ss_dssp             HHHHHHTT-CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCC
Confidence            56677665 35888888999999999999999999999999999988888999999999999999999999999998888


Q ss_pred             ccccchhhHHHhhhhh--hHHhhh---------hccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHH
Q psy12892         82 TDHQGIQRDIAAAGTS--VLANCL---------LMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAE  150 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~--~~~~~~---------~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~  150 (315)
                      .+..+.+.........  .....+         .+..|.||||+|+..|+.+++++|++.+.+++..+..|.||||+|+.
T Consensus       109 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  188 (437)
T 1n11_A          109 ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH  188 (437)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHH
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence            7776655433332221  111111         13467889999999999999999999999999889899999999999


Q ss_pred             cCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy12892        151 NGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNK  224 (315)
Q Consensus       151 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~  224 (315)
                      .|+.+++++|+++ +.+++..+..+.|||++|+..++.+++++|++.+      +..|.||||.|+..++.+++++|++ 
T Consensus       189 ~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-  266 (437)
T 1n11_A          189 HNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-  266 (437)
T ss_dssp             TTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-
T ss_pred             cCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh-
Confidence            9999999999986 8888888888999999999999999999999876      5578899999999999999999998 


Q ss_pred             cCCccccCCCCCCCCCCcccc------chhhhhhHHH-----HHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeee
Q psy12892        225 KGINVAALGGEDLTGRPDLTV------GPVQAYLYQV-----YLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRM  293 (315)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~  293 (315)
                      .+++++..+..+.+   ++..      ..+..++.+.     ..+..|+||||+|+..   ++.+++++|+++|++++.+
T Consensus       267 ~~~~~~~~~~~g~t---~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~gad~n~~  340 (437)
T 1n11_A          267 KQANGNLGNKSGLT---PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY---GNIKLVKFLLQHQADVNAK  340 (437)
T ss_dssp             TTCCTTCCCTTCCC---HHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHS---SCSHHHHHHHHTTCCTTCC
T ss_pred             cCCCCCCCCCCCCC---HHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHc---CcHHHHHHHHhcCCCCCCC
Confidence            89888876654433   1110      0111112211     1233455555555555   5555555555555555555


Q ss_pred             ccCCceeEEEeecCchhhhhc
Q psy12892        294 TVDGTLILYYRGKDSKAQIEE  314 (315)
Q Consensus       294 ~~~g~t~l~~A~~~~~~~~~~  314 (315)
                      |..|.|||++|++.|+.++++
T Consensus       341 ~~~g~t~L~~A~~~g~~~iv~  361 (437)
T 1n11_A          341 TKLGYSPLHQAAQQGHTDIVT  361 (437)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCCCCCHHHHHHHCChHHHHH
Confidence            555555555555555555554

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-48  Score=336.03  Aligned_cols=283  Identities=26%  Similarity=0.331  Sum_probs=230.7

Q ss_pred             ChhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCc
Q psy12892          1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANAS   80 (315)
Q Consensus         1 ~~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~   80 (315)
                      ++++|++++. +++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus        95 ~v~~Ll~~ga-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  173 (437)
T 1n11_A           95 MVKLLLENNA-NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN  173 (437)
T ss_dssp             HHHHHHHHTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHhCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence            3577877764 588899999999999999999999999999999998889999999999999999999999999999988


Q ss_pred             cccccchhhHHHhhhh--hhHHhhhh---------ccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHH
Q psy12892         81 ITDHQGIQRDIAAAGT--SVLANCLL---------MGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAA  149 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~  149 (315)
                      ..+..+.+........  ......+.         +..|.||||+|+..++.+++++|++.|.+++..+..|.||||+|+
T Consensus       174 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  253 (437)
T 1n11_A          174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA  253 (437)
T ss_dssp             CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            8877554443222211  11111111         135677888888888888888888888877777777888888888


Q ss_pred             HcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHh
Q psy12892        150 ENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLN  223 (315)
Q Consensus       150 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~  223 (315)
                      ..|+.+++++|+++ +.+++..+..|.||||+|+..|+.+++++|++.+      +..|.||||+|+.+++.+++++|++
T Consensus       254 ~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  332 (437)
T 1n11_A          254 QEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ  332 (437)
T ss_dssp             HTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH
T ss_pred             HCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            88888888888875 7777777777888888888888888888887765      4567788888888888888888887


Q ss_pred             ccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEE
Q psy12892        224 KKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYY  303 (315)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~  303 (315)
                       .|++++.+                         +..|+||||+|+..   ++.+++++|+++|++++.+|.+|.||+++
T Consensus       333 -~gad~n~~-------------------------~~~g~t~L~~A~~~---g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~  383 (437)
T 1n11_A          333 -HQADVNAK-------------------------TKLGYSPLHQAAQQ---GHTDIVTLLLKNGASPNEVSSDGTTPLAI  383 (437)
T ss_dssp             -TTCCTTCC-------------------------CTTSCCHHHHHHHT---TCHHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred             -cCCCCCCC-------------------------CCCCCCHHHHHHHC---ChHHHHHHHHHCcCCCCCCCCCCCCHHHH
Confidence             78887774                         67899999999999   99999999999999999999999999999


Q ss_pred             eecCchhhhhc
Q psy12892        304 RGKDSKAQIEE  314 (315)
Q Consensus       304 A~~~~~~~~~~  314 (315)
                      |.+.|+.++++
T Consensus       384 A~~~g~~~~~~  394 (437)
T 1n11_A          384 AKRLGYISVTD  394 (437)
T ss_dssp             HHHTTCHHHHH
T ss_pred             HHHcCcHHHHH
Confidence            99999998876

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.7e-48  Score=313.74  Aligned_cols=246  Identities=25%  Similarity=0.301  Sum_probs=222.4

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHcCCccccc-CCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhh
Q psy12892         18 INGDTALHLAARKRDLDMVRILVDYGTSVDIQ-NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGT   96 (315)
Q Consensus        18 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   96 (315)
                      .+|.||||.|+..|+++++++|++.|++++.. +..|.||||+|+..|+.+++++|+++|++++..+.            
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~------------   70 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK------------   70 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT------------
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC------------
Confidence            46789999999999999999999999999877 77889999999999999999999999999887765            


Q ss_pred             hhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccc-----
Q psy12892         97 SVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFER-----  171 (315)
Q Consensus        97 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-----  171 (315)
                                .|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++. +.+++..     
T Consensus        71 ----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~  139 (285)
T 1wdy_A           71 ----------NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKE  139 (285)
T ss_dssp             ----------TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCCH
T ss_pred             ----------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh-CCCcccccccHH
Confidence                      788999999999999999999999999999999999999999999999999999996 8888776     


Q ss_pred             -----ccCCccHHHHHHHcCcHHHHHHHHhc-C------CCCCCcHHHHHHHcCC----HHHHHHHHhccCCccccCCCC
Q psy12892        172 -----TKENYNVLHLAAMYSREDVVKLLLNK-K------GIENYNVLHLAAMYSR----EDVVKLLLNKKGINVAALGGE  235 (315)
Q Consensus       172 -----~~~~~~~l~~a~~~~~~~~~~~Ll~~-~------~~~~~~~l~~A~~~~~----~~~~~~Ll~~~~~~~~~~~~~  235 (315)
                           +..|.||||+|+..++.+++++|++. +      +..|.||||.|+..++    .+++++|++ .|++++.+   
T Consensus       140 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~---  215 (285)
T 1wdy_A          140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVR---  215 (285)
T ss_dssp             HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCC---
T ss_pred             HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHH-cCCCCCCc---
Confidence                 67788999999999999999999976 4      5678899999999998    899999999 99999874   


Q ss_pred             CCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHh-hccceeeeccCCceeEEEeecCchhhhhc
Q psy12892        236 DLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLS-TAGREIRMTVDGTLILYYRGKDSKAQIEE  314 (315)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  314 (315)
                                            +..|+||||+|+..   ++.+++++|++ .|++++.+|..|.|||++|++.|+.++++
T Consensus       216 ----------------------~~~g~t~L~~A~~~---~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~  270 (285)
T 1wdy_A          216 ----------------------GERGKTPLILAVEK---KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE  270 (285)
T ss_dssp             ----------------------CTTSCCHHHHHHHT---TCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ----------------------CCCCCcHHHHHHHc---CCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHH
Confidence                                  67788999999999   99999999999 89999999999999999999999999886


Q ss_pred             C
Q psy12892        315 L  315 (315)
Q Consensus       315 l  315 (315)
                      +
T Consensus       271 ~  271 (285)
T 1wdy_A          271 L  271 (285)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.2e-47  Score=315.79  Aligned_cols=267  Identities=23%  Similarity=0.255  Sum_probs=228.8

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCC-CCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhh
Q psy12892         16 TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNG-EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAA   94 (315)
Q Consensus        16 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   94 (315)
                      .+.+|.|+||.||+.|++++|++|+++|++++..+. .|.||||+|+..|+.++|++|+++|++++..+...........
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence            345689999999999999999999999999998875 4899999999999999999999999999888776544432222


Q ss_pred             hhhhH--Hh---------hhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccC----------CCCCCcHHHHHHHcCC
Q psy12892         95 GTSVL--AN---------CLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT----------DHQDRTPMHLAAENGH  153 (315)
Q Consensus        95 ~~~~~--~~---------~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~~~~~~l~~a~~~~~  153 (315)
                      .....  ..         ...+..|.||+++|+..|+.+++++|++.|++++..          +..|.||||+|+..|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~  180 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  180 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC
T ss_pred             hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCC
Confidence            11111  11         113457899999999999999999999999887653          4468899999999999


Q ss_pred             HHHHHHHHHhcCccccccccCCccHHHHHHHcCc----HHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHh
Q psy12892        154 ASIIELLADKFRASIFERTKENYNVLHLAAMYSR----EDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLN  223 (315)
Q Consensus       154 ~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~  223 (315)
                      .+++++|+++.|++++..+..|.++++.++..+.    ..++++|++.|      +..|.||||.|+..++.+++++|++
T Consensus       181 ~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~  260 (337)
T 4g8k_A          181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  260 (337)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence            9999999987799999999999999998876543    46889999877      5678999999999999999999998


Q ss_pred             ccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEE
Q psy12892        224 KKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYY  303 (315)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~  303 (315)
                      ..|++++.+                         +..|+||||+|++.   |+.++|++|+++|+|++.+     +||++
T Consensus       261 ~~~~~vn~~-------------------------d~~G~TpL~~A~~~---g~~~iv~~Ll~~GAd~n~~-----~~L~~  307 (337)
T 4g8k_A          261 QEHIEINDT-------------------------DSDGKTALLLAVEL---KLKKIAELLCKRGASTDCG-----DLVMT  307 (337)
T ss_dssp             STTCCTTCB-------------------------CTTSCBHHHHHHHT---TCHHHHHHHHTTSCSSTTC-----CHHHH
T ss_pred             hcCCcccCc-------------------------CCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCC-----CHHHH
Confidence            678999985                         67899999999999   9999999999999998754     59999


Q ss_pred             eecCchhhhhcC
Q psy12892        304 RGKDSKAQIEEL  315 (315)
Q Consensus       304 A~~~~~~~~~~l  315 (315)
                      |++.|+.++|++
T Consensus       308 A~~~~~~~iv~~  319 (337)
T 4g8k_A          308 ARRNYDHSLVKV  319 (337)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHH
Confidence            999999999874

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.9e-45  Score=298.12  Aligned_cols=243  Identities=25%  Similarity=0.283  Sum_probs=226.3

Q ss_pred             hhHhhhhchhhcccc-ccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCc
Q psy12892          2 WELLSTQTAEQLKAT-TINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANAS   80 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~   80 (315)
                      +++|++.++ +++.+ +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus        21 v~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   99 (285)
T 1wdy_A           21 VQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN   99 (285)
T ss_dssp             HHHHHHTTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            567777765 46766 8899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccC----------CCCCCcHHHHHHH
Q psy12892         81 ITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT----------DHQDRTPMHLAAE  150 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~~~~~~l~~a~~  150 (315)
                      ..+.                      .|.||||+|+..|+.+++++|++.|.+++..          +..|.||||+|+.
T Consensus       100 ~~~~----------------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  157 (285)
T 1wdy_A          100 ECDF----------------------YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE  157 (285)
T ss_dssp             CBCT----------------------TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred             ccCc----------------------ccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence            8776                      7899999999999999999999999999877          7789999999999


Q ss_pred             cCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCc----HHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHH
Q psy12892        151 NGHASIIELLADKFRASIFERTKENYNVLHLAAMYSR----EDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKL  220 (315)
Q Consensus       151 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~  220 (315)
                      .|+.+++++|++..+.+++..+..|.||||+|+..++    .+++++|++.+      +..|.||||+|+..++.+++++
T Consensus       158 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  237 (285)
T 1wdy_A          158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR  237 (285)
T ss_dssp             HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            9999999999997799999999999999999999999    99999999887      5679999999999999999999


Q ss_pred             HHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeecc
Q psy12892        221 LLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTV  295 (315)
Q Consensus       221 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~  295 (315)
                      |++..|++++.+                         +..|+||||+|++.   ++.+++++|+++|++++.+|.
T Consensus       238 Ll~~~g~~~~~~-------------------------~~~g~t~l~~A~~~---~~~~i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          238 LLEQEHIEINDT-------------------------DSDGKTALLLAVEL---KLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHSSSCCTTCC-------------------------CTTSCCHHHHHHHT---TCHHHHHHHHHHSSCSCCSSC
T ss_pred             HHhccCCCcccc-------------------------CCCCCcHHHHHHHc---CcHHHHHHHHHcCCCCCcccc
Confidence            998789999985                         67899999999999   999999999999999998873

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.7e-46  Score=315.91  Aligned_cols=252  Identities=22%  Similarity=0.221  Sum_probs=226.4

Q ss_pred             hchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccch
Q psy12892          8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGI   87 (315)
Q Consensus         8 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~   87 (315)
                      ....+.+.+|.+|.||||+||..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..     
T Consensus         8 ~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-----   82 (364)
T 3ljn_A            8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW-----   82 (364)
T ss_dssp             --------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCB-----
T ss_pred             ccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc-----
Confidence            334567888999999999999999999999999999999999999999999999999999999999999965542     


Q ss_pred             hhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhC----CCCccc-----------------CCCCCCcHHH
Q psy12892         88 QRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGA----KANASI-----------------TDHQDRTPMH  146 (315)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~----~~~~~~-----------------~~~~~~~~l~  146 (315)
                                         .|.||||+|+..|+.+++++|++.    +.+++.                 .+..|.||||
T Consensus        83 -------------------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  143 (364)
T 3ljn_A           83 -------------------HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH  143 (364)
T ss_dssp             -------------------TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH
T ss_pred             -------------------CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH
Confidence                               588999999999999999999998    777766                 7788999999


Q ss_pred             HHHHcC--CHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC-----------CCCCCcHHHHHHHcC
Q psy12892        147 LAAENG--HASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK-----------GIENYNVLHLAAMYS  213 (315)
Q Consensus       147 ~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-----------~~~~~~~l~~A~~~~  213 (315)
                      +|+..|  +.+++++|++. |++++..+..|.||||+|+..|+.+++++|++.+           +..|.||||+|+..+
T Consensus       144 ~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g  222 (364)
T 3ljn_A          144 WCVGLGPEYLEMIKILVQL-GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN  222 (364)
T ss_dssp             HHHHSCGGGHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTT
T ss_pred             HHHHcCCchHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcC
Confidence            999999  99999999997 9999999999999999999999999999999865           457899999999999


Q ss_pred             CHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceee-
Q psy12892        214 REDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIR-  292 (315)
Q Consensus       214 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~-  292 (315)
                      +.+++++|++ .|++++..                         +..|.||||+|+..   ++.+++++|+++|++++. 
T Consensus       223 ~~~~v~~Ll~-~gad~~~~-------------------------d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~  273 (364)
T 3ljn_A          223 WEDVAMRFVE-MGIDVNME-------------------------DNEHTVPLYLSVRA---AMVLLTKELLQKTDVFLIQ  273 (364)
T ss_dssp             CHHHHHHHHT-TTCCTTCC-------------------------CTTSCCHHHHHHHT---CCHHHHHHHHHHSCHHHHH
T ss_pred             CHHHHHHHHH-cCCCCCCC-------------------------CCCCCCHHHHHHHh---ChHHHHHHHHHcCCchhhh
Confidence            9999999999 99999985                         77899999999999   999999999999988743 


Q ss_pred             -----------eccCCceeEEEeecCchhhhh
Q psy12892        293 -----------MTVDGTLILYYRGKDSKAQIE  313 (315)
Q Consensus       293 -----------~~~~g~t~l~~A~~~~~~~~~  313 (315)
                                 .+..+.||+++|+..|+.+.+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v  305 (364)
T 3ljn_A          274 ACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV  305 (364)
T ss_dssp             TCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHH
T ss_pred             cCcccCcccccccccccccchhhhhccCHHHH
Confidence                       567889999999999976654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=300.07  Aligned_cols=242  Identities=17%  Similarity=0.130  Sum_probs=180.0

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHcC-----------CcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcccccc
Q psy12892         17 TINGDTALHLAARKRDLDMVRILVDYG-----------TSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQ   85 (315)
Q Consensus        17 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----------~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   85 (315)
                      ...|.|+||+|+..|+.+.+..++..+           ..++..|..|.||||+|+..|+.+++++|++.|++++..+. 
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~-   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA-   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT-
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-
Confidence            457888999999988877666655442           12455778888999999999999999999988888887766 


Q ss_pred             chhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q psy12892         86 GIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFR  165 (315)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  165 (315)
                                           .|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. +
T Consensus        91 ---------------------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g  148 (285)
T 3d9h_A           91 ---------------------DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH-G  148 (285)
T ss_dssp             ---------------------TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-T
T ss_pred             ---------------------CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC-C
Confidence                                 688999999999999999999988888888888889999999999999999999985 7


Q ss_pred             ccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCC
Q psy12892        166 ASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTG  239 (315)
Q Consensus       166 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  239 (315)
                      .+++..+ .|.||||+|+..|+.+++++|++.+      +..|.||||+|+..++.+++++|++ .|++++.        
T Consensus       149 ~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~--------  218 (285)
T 3d9h_A          149 ASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ--------  218 (285)
T ss_dssp             CCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTC--------
T ss_pred             CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-CCCCCCC--------
Confidence            7776544 4888999999999999999998876      5567889999999999999999998 8888874        


Q ss_pred             CCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhhhc
Q psy12892        240 RPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEE  314 (315)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  314 (315)
                                        +..|.||||+|+..   ++.+++++|+++|+|++.+|..|.|||++|++.  .++++
T Consensus       219 ------------------~~~g~t~L~~A~~~---~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~--~~~~~  270 (285)
T 3d9h_A          219 ------------------GKGQDSPLHAVVRT---ASEELACLLMDFGADTQAKNAEGKRPVELVPPE--SPLAQ  270 (285)
T ss_dssp             ------------------CBTTBCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT--SHHHH
T ss_pred             ------------------CCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCc--cHHHH
Confidence                              45678999999998   889999999999999999999999999998843  45543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.5e-45  Score=299.53  Aligned_cols=248  Identities=24%  Similarity=0.303  Sum_probs=192.6

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCc---ccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhh
Q psy12892         13 LKATTINGDTALHLAARKRDLDMVRILVDYGTS---VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQR   89 (315)
Q Consensus        13 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   89 (315)
                      ++.+|.+|.||||+||..|+.+++++|++.|++   ++..+..|.||||+|+..|+.+++++|+++|++++..+.     
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-----   76 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER-----   76 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT-----
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-----
Confidence            577899999999999999999999999999988   888999999999999999999999999999999998876     


Q ss_pred             HHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccC-------------CCCCCcHHHHHHHcCCHHH
Q psy12892         90 DIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT-------------DHQDRTPMHLAAENGHASI  156 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~-------------~~~~~~~l~~a~~~~~~~~  156 (315)
                                       .|.||||+|+..++.+++++|++.+.+....             ...+.++++.+...+....
T Consensus        77 -----------------~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (282)
T 1oy3_D           77 -----------------GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE  139 (282)
T ss_dssp             -----------------TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------
T ss_pred             -----------------CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchh
Confidence                             7999999999999999999999988764322             2234566777666665554


Q ss_pred             HHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------C-CCCCcHHHHHHHcCCHHHHHHHHhccCCcc
Q psy12892        157 IELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------G-IENYNVLHLAAMYSREDVVKLLLNKKGINV  229 (315)
Q Consensus       157 ~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~-~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~  229 (315)
                      ...++...+.+++..+..|.||||+|+..|+.+++++|++.+      + ..|.||||+|+..++.+++++|++ .|+++
T Consensus       140 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~  218 (282)
T 1oy3_D          140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADP  218 (282)
T ss_dssp             ----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCT
T ss_pred             hhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCC
Confidence            444444468889999999999999999999999999999887      2 349999999999999999999999 89999


Q ss_pred             ccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCch
Q psy12892        230 AALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSK  309 (315)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  309 (315)
                      +.+                         +..|+||||+|+..   ++.+++++|+++|++++.+|..|.||+++|.....
T Consensus       219 ~~~-------------------------d~~g~tpL~~A~~~---~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          219 TAR-------------------------MYGGRTPLGSALLR---PNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             TCC-------------------------CTTSCCHHHHHHTS---SCHHHHHHHHHTTCCCCCCC---------------
T ss_pred             ccc-------------------------ccCCCCHHHHHHHc---CCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence            985                         67899999999999   99999999999999999999999999999988665


Q ss_pred             hh
Q psy12892        310 AQ  311 (315)
Q Consensus       310 ~~  311 (315)
                      .+
T Consensus       271 ~~  272 (282)
T 1oy3_D          271 SD  272 (282)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=9.3e-45  Score=303.88  Aligned_cols=245  Identities=22%  Similarity=0.268  Sum_probs=164.5

Q ss_pred             hhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhh
Q psy12892         10 AEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQR   89 (315)
Q Consensus        10 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   89 (315)
                      +.+++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+.     
T Consensus        48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~-----  122 (351)
T 3utm_A           48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL-----  122 (351)
T ss_dssp             TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC-----
Confidence            334455555555555555555555555555555555555555555555555555555555555555555444433     


Q ss_pred             HHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHH---------------------
Q psy12892         90 DIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLA---------------------  148 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a---------------------  148 (315)
                                       .|.||||+|+..|+.+++++|++.|++++..+..|.+|++++                     
T Consensus       123 -----------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~  185 (351)
T 3utm_A          123 -----------------WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA  185 (351)
T ss_dssp             -----------------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHH
Confidence                             344555555555555555555555555555555555444332                     


Q ss_pred             HHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHc---CcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHH
Q psy12892        149 AENGHASIIELLADKFRASIFERTKENYNVLHLAAMY---SREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVK  219 (315)
Q Consensus       149 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~  219 (315)
                      +..+..+.++.++.. .......+..+.||||+|+..   +..+++++|++.+      +..|.||||.|+..++.++++
T Consensus       186 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~  264 (351)
T 3utm_A          186 AREADLAKVKKTLAL-EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME  264 (351)
T ss_dssp             HHTTCHHHHHHHTTT-CCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHhccHHHHHHHHHh-hcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            223333333333332 222223446678999999998   6689999999876      667899999999999999999


Q ss_pred             HHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCce
Q psy12892        220 LLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTL  299 (315)
Q Consensus       220 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t  299 (315)
                      +|++ .|++++.+                         +..|+||||+|+..   ++.+++++|+++|+|++.+|..|.|
T Consensus       265 ~Ll~-~ga~~n~~-------------------------d~~g~t~L~~A~~~---~~~~~v~~Ll~~gad~~~~~~~g~t  315 (351)
T 3utm_A          265 VLHK-HGAKMNAL-------------------------DSLGQTALHRAALA---GHLQTCRLLLSYGSDPSIISLQGFT  315 (351)
T ss_dssp             HHHH-TTCCTTCC-------------------------CTTSCCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             HHHH-CCCCCCCc-------------------------CCCCCCHHHHHHHc---CcHHHHHHHHHcCCCCCCcCCCCCC
Confidence            9999 99999985                         67899999999999   9999999999999999999999999


Q ss_pred             eEEEeec
Q psy12892        300 ILYYRGK  306 (315)
Q Consensus       300 ~l~~A~~  306 (315)
                      |+++|..
T Consensus       316 al~~a~~  322 (351)
T 3utm_A          316 AAQMGNE  322 (351)
T ss_dssp             HHHHSCH
T ss_pred             hhhhhhH
Confidence            9999855

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.2e-46  Score=315.66  Aligned_cols=249  Identities=20%  Similarity=0.247  Sum_probs=222.2

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccC-CCCChHHHHHHhcCCHHHHHHHH--------hccCCCcccc
Q psy12892         13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQN-GEGQTALHIASAEGDEALVKYFY--------GAKANASITD   83 (315)
Q Consensus        13 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~v~~Ll--------~~~~~~~~~~   83 (315)
                      .+.++..|.||||.|+..+ .+++++|+.  .+++..| ..|.||||+|+..|+.+++++|+        +.|++++..+
T Consensus        87 ~~~~~~~g~t~L~~Aa~~~-~~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d  163 (373)
T 2fo1_E           87 PTEPEPESPIKLHTEAAGS-YAITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD  163 (373)
T ss_dssp             -------CCCHHHHHHHSS-SCCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCC
T ss_pred             ccCCCCCCccHHHHHhcCC-chHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence            3567889999999999955 488888865  4677777 78999999999999998888776        7899999887


Q ss_pred             ccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q psy12892         84 HQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK  163 (315)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  163 (315)
                      .                      .|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.
T Consensus       164 ~----------------------~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  221 (373)
T 2fo1_E          164 C----------------------DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNS  221 (373)
T ss_dssp             T----------------------TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTS
T ss_pred             C----------------------CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence            6                      799999999999999999999999999999999999999999999999999999986


Q ss_pred             cC---ccccccccCCccHHHHHHHcC---cHHHHHHHHhcC--------------CCCCCcHHHHHHHcCCHHHHHHHHh
Q psy12892        164 FR---ASIFERTKENYNVLHLAAMYS---REDVVKLLLNKK--------------GIENYNVLHLAAMYSREDVVKLLLN  223 (315)
Q Consensus       164 ~~---~~~~~~~~~~~~~l~~a~~~~---~~~~~~~Ll~~~--------------~~~~~~~l~~A~~~~~~~~~~~Ll~  223 (315)
                       +   .+++..+..|.||||+|+..+   +.+++++|++.+              +..|.||||+|+..++.+++++|++
T Consensus       222 -~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  300 (373)
T 2fo1_E          222 -TKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG  300 (373)
T ss_dssp             -HHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHH
T ss_pred             -CccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHH
Confidence             5   788999999999999999998   899999999876              2368999999999999999999998


Q ss_pred             ccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEE
Q psy12892        224 KKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYY  303 (315)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~  303 (315)
                      ..+++++..                         +..|+||||+|+..   |+.+++++|+++|++++.+|..|.|||++
T Consensus       301 ~~~~~~n~~-------------------------d~~g~TpL~~A~~~---g~~~iv~~Ll~~gad~~~~d~~g~t~l~~  352 (373)
T 2fo1_E          301 EKGSNKDKQ-------------------------DEDGKTPIMLAAQE---GRIEVVMYLIQQGASVEAVDATDHTARQL  352 (373)
T ss_dssp             HSCCCTTCC-------------------------CTTCCCHHHHHHHH---TCHHHHHHHHHTTCCSSCCCSSSCCHHHH
T ss_pred             hcCCCccCc-------------------------CCCCCCHHHHHHHc---CCHHHHHHHHHcCCCccCCCCCCCCHHHH
Confidence            456999985                         67899999999999   99999999999999999999999999999


Q ss_pred             eecCchhhhhcC
Q psy12892        304 RGKDSKAQIEEL  315 (315)
Q Consensus       304 A~~~~~~~~~~l  315 (315)
                      |+++|+.+++++
T Consensus       353 A~~~g~~~iv~~  364 (373)
T 2fo1_E          353 AQANNHHNIVDI  364 (373)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHH
Confidence            999999999874

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.1e-43  Score=285.77  Aligned_cols=226  Identities=22%  Similarity=0.222  Sum_probs=207.3

Q ss_pred             hccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHH
Q psy12892         12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDI   91 (315)
Q Consensus        12 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~   91 (315)
                      .++.+|.+|.||||+||..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+.       
T Consensus        51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-------  123 (285)
T 3d9h_A           51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA-------  123 (285)
T ss_dssp             TTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCT-------
T ss_pred             cccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC-------
Confidence            4788999999999999999999999999999999999999999999999999999999999999999998876       


Q ss_pred             HhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccc
Q psy12892         92 AAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFER  171 (315)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  171 (315)
                                     .|.||||+|+..|+.+++++|++.|.+++..+ .|.||||+|+..|+.+++++|++. +.+++..
T Consensus       124 ---------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~  186 (285)
T 3d9h_A          124 ---------------DWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAY-GGNIDHK  186 (285)
T ss_dssp             ---------------TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred             ---------------CCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCc
Confidence                           79999999999999999999999999987654 599999999999999999999996 9999999


Q ss_pred             ccCCccHHHHHHHcCcHHHHHHHHhcC-----CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccc
Q psy12892        172 TKENYNVLHLAAMYSREDVVKLLLNKK-----GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVG  246 (315)
Q Consensus       172 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~-----~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  246 (315)
                      +..|.||||+|+..++.+++++|++.+     +..|.||||+|+..++.+++++|++ .|++++.+              
T Consensus       187 d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~--------------  251 (285)
T 3d9h_A          187 ISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMD-FGADTQAK--------------  251 (285)
T ss_dssp             BTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCC--------------
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc--------------
Confidence            999999999999999999999999887     5578999999999999999999999 99999985              


Q ss_pred             hhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhh-ccceee
Q psy12892        247 PVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLST-AGREIR  292 (315)
Q Consensus       247 ~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~-g~~~~~  292 (315)
                                 +..|+||||+|+..     .+++++|+++ |+++..
T Consensus       252 -----------d~~g~t~l~~A~~~-----~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          252 -----------NAEGKRPVELVPPE-----SPLAQLFLEREGASLPK  282 (285)
T ss_dssp             -----------CTTSCCGGGGSCTT-----SHHHHHHHHHC------
T ss_pred             -----------CCCCCCHHHHhcCc-----cHHHHHHHHhhccCCCC
Confidence                       78899999999965     4899999998 877654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.2e-44  Score=286.92  Aligned_cols=225  Identities=23%  Similarity=0.253  Sum_probs=176.1

Q ss_pred             hccccccCCCcHHHHHHHcC-------------CHHHHHHHHHcCCcccc-cCCCCChHHHHHHhcCCHHHHHHHHhccC
Q psy12892         12 QLKATTINGDTALHLAARKR-------------DLDMVRILVDYGTSVDI-QNGEGQTALHIASAEGDEALVKYFYGAKA   77 (315)
Q Consensus        12 ~~~~~~~~g~t~L~~A~~~~-------------~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~   77 (315)
                      ++|.+|.+|.||||+|+..|             +.+++++|++.|++++. .|..|.||||+|+..|+.+++++|+++|+
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            58899999999999999987             89999999999999865 48999999999999999999999999999


Q ss_pred             CCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCC-CcccCCCCCCcHHHHHHHcCCHHH
Q psy12892         78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA-NASITDHQDRTPMHLAAENGHASI  156 (315)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~  156 (315)
                      +++..+.                      .|.||||+|+..++.+++++|++.+. +++..+..|.||||+|+..|+.++
T Consensus        82 ~~~~~~~----------------------~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  139 (253)
T 1yyh_A           82 DANIQDN----------------------MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM  139 (253)
T ss_dssp             CTTCCCT----------------------TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSH
T ss_pred             CCCCCCC----------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHH
Confidence            9988776                      79999999999999999999999987 889999999999999999999999


Q ss_pred             HHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccc
Q psy12892        157 IELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVA  230 (315)
Q Consensus       157 ~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~  230 (315)
                      +++|++. |++++..+..|.||||+|+..|+.+++++|++.+      +..|.||||+|+..++.+++++|++ .|++++
T Consensus       140 v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~  217 (253)
T 1yyh_A          140 LEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD-HFANRD  217 (253)
T ss_dssp             HHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTT
T ss_pred             HHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCcc
Confidence            9999996 9999999999999999999999999999999887      6679999999999999999999999 999999


Q ss_pred             cCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhcc
Q psy12892        231 ALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAG  288 (315)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~  288 (315)
                      .+                         +..|+|||++|++.   |+.+++++|.+..-
T Consensus       218 ~~-------------------------d~~g~tpl~~A~~~---g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          218 IT-------------------------DHMDRLPRDIAQER---MHHDIVRLLDLEHH  247 (253)
T ss_dssp             CC-------------------------CTTCCCHHHHHHHT---TCHHHHHHHHC---
T ss_pred             cc-------------------------ccCCCCHHHHHHHc---CCHHHHHHHHHHhh
Confidence            85                         77899999999999   99999999998643

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.9e-43  Score=280.59  Aligned_cols=224  Identities=25%  Similarity=0.293  Sum_probs=202.6

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHH----cCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchh
Q psy12892         13 LKATTINGDTALHLAARKRDLDMVRILVD----YGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQ   88 (315)
Q Consensus        13 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~   88 (315)
                      ++.+|.+|.||||+||..|+.+++++|++    .|.+++..|..|.||||+|+..|+.+++++|+++|++++..+.    
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----   77 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR----   77 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC----
Confidence            56789999999999999999999999997    7999999999999999999999999999999999999988776    


Q ss_pred             hHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCC----CcccCCCCCCcHHHHHHHcCCHHHHHHHHHhc
Q psy12892         89 RDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA----NASITDHQDRTPMHLAAENGHASIIELLADKF  164 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  164 (315)
                                        .|.||||+|+..++.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|++. 
T Consensus        78 ------------------~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-  138 (241)
T 1k1a_A           78 ------------------HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-  138 (241)
T ss_dssp             ------------------TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-
T ss_pred             ------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc-
Confidence                              78999999999999999999999887    7888899999999999999999999999996 


Q ss_pred             Cccccccc-cCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCC
Q psy12892        165 RASIFERT-KENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDL  237 (315)
Q Consensus       165 ~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  237 (315)
                      +.+++..+ ..|.||||+|+..++.+++++|++.+      +..|.||||+|+..++.+++++|++ .|++++.+     
T Consensus       139 g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~-----  212 (241)
T 1k1a_A          139 GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLK-----  212 (241)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCC-----
T ss_pred             CCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCc-----
Confidence            99999888 78999999999999999999999887      6678999999999999999999999 99999985     


Q ss_pred             CCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhcc
Q psy12892        238 TGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAG  288 (315)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~  288 (315)
                                          +..|.||||+|+..   ++.++++.|++.++
T Consensus       213 --------------------~~~g~tpl~~A~~~---~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          213 --------------------NCHNDTPLMVARSR---RVIDILRGKATRPA  240 (241)
T ss_dssp             --------------------CTTSCCTTTTCSSH---HHHHHHTC------
T ss_pred             --------------------CCCCCCHHHHHHhc---CcHHHHhhhccCCC
Confidence                                67899999999999   99999999998865

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.3e-44  Score=300.56  Aligned_cols=253  Identities=21%  Similarity=0.205  Sum_probs=229.2

Q ss_pred             hhccccccCCCcHHHHHHHcCCHHHHHHHHHc-CCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhh
Q psy12892         11 EQLKATTINGDTALHLAARKRDLDMVRILVDY-GTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQR   89 (315)
Q Consensus        11 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   89 (315)
                      ...+.++..|.|+||.|++.|+.+.++.|+.. +.+++..|..|.||||+|+..|+.+++++|+++|++++..+.     
T Consensus        15 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-----   89 (351)
T 3utm_A           15 AKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK-----   89 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----
T ss_pred             eeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-----
Confidence            34667788999999999999999999999875 899999999999999999999999999999999999988876     


Q ss_pred             HHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccc
Q psy12892         90 DIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF  169 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~  169 (315)
                                       .|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++ |++++
T Consensus        90 -----------------~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~  151 (351)
T 3utm_A           90 -----------------GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPT  151 (351)
T ss_dssp             -----------------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTT
T ss_pred             -----------------CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCc
Confidence                             799999999999999999999999999999999999999999999999999999996 99999


Q ss_pred             ccccCCccHHHHHH---------------------HcCcHHHHHHHHhcC------CCCCCcHHHHHHHc---CCHHHHH
Q psy12892        170 ERTKENYNVLHLAA---------------------MYSREDVVKLLLNKK------GIENYNVLHLAAMY---SREDVVK  219 (315)
Q Consensus       170 ~~~~~~~~~l~~a~---------------------~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~---~~~~~~~  219 (315)
                      ..+..+.+++++++                     ..+..+.+..++...      +..|.||||.|+..   ++.++++
T Consensus       152 ~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~  231 (351)
T 3utm_A          152 LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE  231 (351)
T ss_dssp             CCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHH
T ss_pred             cccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHH
Confidence            99999999887754                     444455555554433      56788999999999   6689999


Q ss_pred             HHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCce
Q psy12892        220 LLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTL  299 (315)
Q Consensus       220 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t  299 (315)
                      +|++ .|++++.+                         +..|+||||+|+..   ++.+++++|+++|++++.+|..|.|
T Consensus       232 ~Ll~-~g~~~~~~-------------------------~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~n~~d~~g~t  282 (351)
T 3utm_A          232 LLLR-KGANVNEK-------------------------NKDFMTPLHVAAER---AHNDVMEVLHKHGAKMNALDSLGQT  282 (351)
T ss_dssp             HHHH-TTCCTTCC-------------------------CTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             HHHH-cCCCcCCc-------------------------CCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            9999 99999985                         67899999999999   9999999999999999999999999


Q ss_pred             eEEEeecCchhhhhcC
Q psy12892        300 ILYYRGKDSKAQIEEL  315 (315)
Q Consensus       300 ~l~~A~~~~~~~~~~l  315 (315)
                      ||++|++.|+.+++++
T Consensus       283 ~L~~A~~~~~~~~v~~  298 (351)
T 3utm_A          283 ALHRAALAGHLQTCRL  298 (351)
T ss_dssp             HHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHcCcHHHHHH
Confidence            9999999999999874

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.3e-42  Score=275.14  Aligned_cols=222  Identities=28%  Similarity=0.363  Sum_probs=209.4

Q ss_pred             hccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHH
Q psy12892         12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDI   91 (315)
Q Consensus        12 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~   91 (315)
                      +++.+|.+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+.       
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-------   75 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA-------   75 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCT-------
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC-------
Confidence            5788999999999999999999999999999999999999999999999999999999999999999888776       


Q ss_pred             HhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCC-CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccc
Q psy12892         92 AAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK-ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFE  170 (315)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~  170 (315)
                                     .|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++. |.+++.
T Consensus        76 ---------------~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~  139 (237)
T 3b7b_A           76 ---------------EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINI  139 (237)
T ss_dssp             ---------------TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTC
T ss_pred             ---------------CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCc
Confidence                           7899999999999999999999998 88899999999999999999999999999996 999999


Q ss_pred             cccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccc
Q psy12892        171 RTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLT  244 (315)
Q Consensus       171 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  244 (315)
                      .+..|.||||+|+..|+.+++++|++.+      +..|.||||+|+..++.+++++|++ .|++++.+            
T Consensus       140 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~------------  206 (237)
T 3b7b_A          140 RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLK------------  206 (237)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCC------------
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCcc------------
Confidence            9999999999999999999999999887      5678999999999999999999999 99999985            


Q ss_pred             cchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHh
Q psy12892        245 VGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLS  285 (315)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~  285 (315)
                                   +..|+||||+|+..   ++.+.+..|++
T Consensus       207 -------------d~~g~t~l~~A~~~---~~~~~~~~l~~  231 (237)
T 3b7b_A          207 -------------NKEGETPLQCASLN---SQVWSALQMSK  231 (237)
T ss_dssp             -------------CTTSCCHHHHSCTT---CHHHHHHHHHH
T ss_pred             -------------CCCCCCHHHHHHHH---HHHHHHHHHHH
Confidence                         78899999999999   99877776665

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.2e-44  Score=289.42  Aligned_cols=221  Identities=24%  Similarity=0.279  Sum_probs=172.5

Q ss_pred             cccccCCCCChHHHHHHhcC-------------CHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChH
Q psy12892         45 SVDIQNGEGQTALHIASAEG-------------DEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTA  111 (315)
Q Consensus        45 ~~~~~~~~g~t~l~~A~~~~-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (315)
                      |++.+|..|.||||+|+..|             +.+++++|+++|++++.....                     .|.||
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~---------------------~g~t~   60 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDR---------------------TGETA   60 (253)
T ss_dssp             --------------------------------------------------CCCT---------------------TSCCH
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCC---------------------CCCcH
Confidence            67889999999999999977             899999999999988654222                     79999


Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHH
Q psy12892        112 LHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV  191 (315)
Q Consensus       112 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  191 (315)
                      ||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++....+++..+..|.||||+|+..++.+++
T Consensus        61 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  140 (253)
T 1yyh_A           61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML  140 (253)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHH
Confidence            99999999999999999999999999999999999999999999999999974458999999999999999999999999


Q ss_pred             HHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcc
Q psy12892        192 KLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAV  265 (315)
Q Consensus       192 ~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L  265 (315)
                      ++|++.+      +..|.||||+|+..++.+++++|++ .|++++..                         +..|.|||
T Consensus       141 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~-------------------------~~~g~tpL  194 (253)
T 1yyh_A          141 EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQ-------------------------NNREETPL  194 (253)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------------------CTTSCCHH
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------------------CCCCCCHH
Confidence            9999876      6679999999999999999999999 99999985                         67899999


Q ss_pred             eeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhhhcC
Q psy12892        266 HLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       266 ~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                      |+|+..   ++.+++++|+++|++++.+|..|.||+++|+++|+.+|+++
T Consensus       195 ~~A~~~---~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~  241 (253)
T 1yyh_A          195 FLAARE---GSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL  241 (253)
T ss_dssp             HHHHHH---TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHC---CCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHH
Confidence            999999   99999999999999999999999999999999999999863

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.3e-42  Score=289.19  Aligned_cols=245  Identities=23%  Similarity=0.229  Sum_probs=205.0

Q ss_pred             ChhHhhhhchhhcccccc-CCCcHHHHHHHcCCHHHHHHHHHcCCccc--------------------------------
Q psy12892          1 IWELLSTQTAEQLKATTI-NGDTALHLAARKRDLDMVRILVDYGTSVD--------------------------------   47 (315)
Q Consensus         1 ~~~~l~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------------------------------   47 (315)
                      ++++|++++. ++|.++. .|.||||+||..|+.++|++|+++|++++                                
T Consensus        40 ~V~~LL~~Ga-dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (337)
T 4g8k_A           40 LVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV  118 (337)
T ss_dssp             HHHHHHHHTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHHCCC-CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchh
Confidence            3678888764 6888875 59999999999999999999999998754                                


Q ss_pred             -ccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHH
Q psy12892         48 -IQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKY  126 (315)
Q Consensus        48 -~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~  126 (315)
                       ..|..|.||||+|+..|+.+++++|+++|++++.........            ...+..|.||||+|+..|+.+++++
T Consensus       119 ~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~------------~~~~~~g~T~L~~A~~~g~~~~v~~  186 (337)
T 4g8k_A          119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ------------ERLRKGGATALMDAAEKGHVEVLKI  186 (337)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----------------CTTCSCCHHHHHHHHTCHHHHHH
T ss_pred             hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccccc------------ccccCCCCcHHHHHHHCCCHHHHHH
Confidence             445667788888888888888888888887776554321110            1112368999999999999999999


Q ss_pred             HHh-CCCCcccCCCCCCcHHHHHHHcCC----HHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC---
Q psy12892        127 FYG-AKANASITDHQDRTPMHLAAENGH----ASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK---  198 (315)
Q Consensus       127 Ll~-~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~---  198 (315)
                      |++ .|++++..+..|.++++.++..+.    ..++++|+++ |++++..+..|.||||+|+..++.+++++|++..   
T Consensus       187 LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~  265 (337)
T 4g8k_A          187 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE  265 (337)
T ss_dssp             HHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC
T ss_pred             HHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc
Confidence            995 699999999999999999887554    4588899986 9999999999999999999999999999999753   


Q ss_pred             ----CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCC
Q psy12892        199 ----GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTG  274 (315)
Q Consensus       199 ----~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  274 (315)
                          +..|.||||+|+..|+.+++++|++ .|++++..                              +|||+|++.   
T Consensus       266 vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GAd~n~~------------------------------~~L~~A~~~---  311 (337)
T 4g8k_A          266 INDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCG------------------------------DLVMTARRN---  311 (337)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCHHHHHHHHT-TSCSSTTC------------------------------CHHHHHHHT---
T ss_pred             ccCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC------------------------------CHHHHHHHc---
Confidence                6789999999999999999999999 99998763                              699999999   


Q ss_pred             CcHHHHHHHHhhccceeee
Q psy12892        275 TATSILRALLSTAGREIRM  293 (315)
Q Consensus       275 ~~~~~i~~Ll~~g~~~~~~  293 (315)
                      ++.++|++||++||+||..
T Consensus       312 ~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          312 YDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             TCHHHHHHHHHTTCCC---
T ss_pred             CCHHHHHHHHHCcCCCCCC
Confidence            9999999999999999864

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.9e-43  Score=277.74  Aligned_cols=217  Identities=24%  Similarity=0.283  Sum_probs=201.2

Q ss_pred             cccCCCCChHHHHHHhcCCHHHHHHHHh----ccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHH
Q psy12892         47 DIQNGEGQTALHIASAEGDEALVKYFYG----AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA  122 (315)
Q Consensus        47 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~  122 (315)
                      +..|.+|.||||+|+..|+.+++++|++    .+.+++..+.                      .|.||||+|+..|+.+
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~----------------------~g~t~L~~A~~~~~~~   60 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN----------------------LRQTPLHLAVITTLPS   60 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT----------------------TSCCHHHHHHHTTCHH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccc----------------------cCCCHHHHHHHcCCHH
Confidence            4678999999999999999999999997    7888887776                      7999999999999999


Q ss_pred             HHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc----cccccccCCccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA----SIFERTKENYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       123 ~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      ++++|++.|.+++..+..|.||||+|+..|+.+++++|++. +.    +++..+..|.||||+|+..++.+++++|++.+
T Consensus        61 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  139 (241)
T 1k1a_A           61 VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS-AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG  139 (241)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999997 55    78888999999999999999999999999987


Q ss_pred             ------C-CCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeecc
Q psy12892        199 ------G-IENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSR  271 (315)
Q Consensus       199 ------~-~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~  271 (315)
                            + ..|.||||.|+..++.+++++|++ .|++++..                         +..|+||||+|+..
T Consensus       140 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------------------~~~g~t~L~~A~~~  193 (241)
T 1k1a_A          140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQ-------------------------MYSGSSALHSASGR  193 (241)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCB-------------------------CTTSCBHHHHHHHH
T ss_pred             CCcccccccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------------------CCCCCCHHHHHHHc
Confidence                  2 568999999999999999999999 99999985                         67899999999999


Q ss_pred             CCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhhhcC
Q psy12892        272 QTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       272 ~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                         ++.+++++|+++|++++.+|..|.||+++|+..|+.++++.
T Consensus       194 ---~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~  234 (241)
T 1k1a_A          194 ---GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG  234 (241)
T ss_dssp             ---TCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC
T ss_pred             ---CCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhh
Confidence               99999999999999999999999999999999999999874

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1e-42  Score=275.65  Aligned_cols=218  Identities=22%  Similarity=0.278  Sum_probs=205.6

Q ss_pred             CcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHH
Q psy12892         44 TSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEAL  123 (315)
Q Consensus        44 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~  123 (315)
                      .+++..|..|.||||+|+..|+.+++++|+++|++++..+.                      .|.||||+|+..|+.++
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------------------~g~t~L~~A~~~~~~~~   59 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE----------------------DQRTPLMEAAENNHLEA   59 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------------------TCCCHHHHHHHTTCHHH
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCC----------------------CCCCHHHHHHHhCCHHH
Confidence            46777899999999999999999999999999999988776                      78999999999999999


Q ss_pred             HHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC-----
Q psy12892        124 VKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK-----  198 (315)
Q Consensus       124 v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-----  198 (315)
                      +++|++.|.+++..+..|.||||+|+..|+.+++++|++..+.+++..+..|.|||++|+..++.+++++|++.+     
T Consensus        60 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  139 (237)
T 3b7b_A           60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI  139 (237)
T ss_dssp             HHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            999999999999999999999999999999999999999744899999999999999999999999999999877     


Q ss_pred             -CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcH
Q psy12892        199 -GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTAT  277 (315)
Q Consensus       199 -~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~  277 (315)
                       +..|.||||.|+..++.+++++|++ .|++++..                         +..|.||||+|++.   ++.
T Consensus       140 ~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-------------------------~~~g~t~L~~A~~~---~~~  190 (237)
T 3b7b_A          140 RDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAV-------------------------NIHGDSPLHIAARE---NRY  190 (237)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHT-TTCCTTCC-------------------------CTTCCCHHHHHHHT---TCH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCc-------------------------CCCCCCHHHHHHHh---CCH
Confidence             5678999999999999999999999 99999885                         67799999999999   999


Q ss_pred             HHHHHHHhhccceeeeccCCceeEEEeecCchhhh
Q psy12892        278 SILRALLSTAGREIRMTVDGTLILYYRGKDSKAQI  312 (315)
Q Consensus       278 ~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  312 (315)
                      +++++|+++|++++.+|..|.|||++|++.|+.+.
T Consensus       191 ~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~  225 (237)
T 3b7b_A          191 DCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS  225 (237)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred             hHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998854

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-43  Score=290.93  Aligned_cols=238  Identities=21%  Similarity=0.259  Sum_probs=211.4

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhh
Q psy12892         16 TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAG   95 (315)
Q Consensus        16 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~   95 (315)
                      .+..|.||||.||..|+++++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+.           
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-----------  104 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN-----------  104 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----------
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-----------
Confidence            456788999999999999999999999999999999999999999999999999999999999988776           


Q ss_pred             hhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCC
Q psy12892         96 TSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN  175 (315)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  175 (315)
                                 .|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++++...+.+++.....+
T Consensus       105 -----------~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~  173 (299)
T 1s70_B          105 -----------EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEE  173 (299)
T ss_dssp             -----------TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             -----------CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhh
Confidence                       799999999999999999999999999999999999999999999999999999988787776554443


Q ss_pred             ccHHHHHHHcCcHHHHHHHHhcC-------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchh
Q psy12892        176 YNVLHLAAMYSREDVVKLLLNKK-------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPV  248 (315)
Q Consensus       176 ~~~l~~a~~~~~~~~~~~Ll~~~-------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (315)
                      .+++.        ..+..++..+       +..|.||||.|+..|+.+++++|++ .|++++..                
T Consensus       174 ~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~----------------  228 (299)
T 1s70_B          174 ERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIK----------------  228 (299)
T ss_dssp             HHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCC----------------
T ss_pred             hhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCc----------------
Confidence            33333        2233444443       4578999999999999999999999 99999985                


Q ss_pred             hhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhh
Q psy12892        249 QAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQI  312 (315)
Q Consensus       249 ~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  312 (315)
                               +..|.||||+|+..   ++.+++++|+++|+|++.+|..|.|||++|.+.....+
T Consensus       229 ---------d~~g~tpL~~A~~~---~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l  280 (299)
T 1s70_B          229 ---------DYDGWTPLHAAAHW---GKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYL  280 (299)
T ss_dssp             ---------CTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHH
T ss_pred             ---------CCCCCcHHHHHHhc---CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHH
Confidence                     67899999999999   99999999999999999999999999999987554433

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=7.1e-42  Score=269.75  Aligned_cols=222  Identities=21%  Similarity=0.256  Sum_probs=208.3

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHcCCc-ccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhh
Q psy12892         17 TINGDTALHLAARKRDLDMVRILVDYGTS-VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAG   95 (315)
Q Consensus        17 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~   95 (315)
                      +..+.+|||.|+..|+++.+++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++..+.           
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-----------   71 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD-----------   71 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-----------
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCC-----------
Confidence            34688999999999999999999988654 677899999999999999999999999999999988776           


Q ss_pred             hhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCC
Q psy12892         96 TSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN  175 (315)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  175 (315)
                                 .|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++. +.+++..+..+
T Consensus        72 -----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g  139 (231)
T 3aji_A           72 -----------AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYD  139 (231)
T ss_dssp             -----------TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS
T ss_pred             -----------CCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCC
Confidence                       789999999999999999999999999999999999999999999999999999996 99999999999


Q ss_pred             ccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhh
Q psy12892        176 YNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQ  249 (315)
Q Consensus       176 ~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (315)
                      .||||+|+..|+.+++++|++.+      +..|.||||+|+..++.+++++|++ .|++++.+                 
T Consensus       140 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~-----------------  201 (231)
T 3aji_A          140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIE-----------------  201 (231)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCC-----------------
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCC-----------------
Confidence            99999999999999999999877      5678999999999999999999999 99999884                 


Q ss_pred             hhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccce
Q psy12892        250 AYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGRE  290 (315)
Q Consensus       250 ~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~  290 (315)
                              +..|.|||++|+..   ++.+++++|+++|+++
T Consensus       202 --------~~~g~t~l~~A~~~---~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          202 --------NKEEKTPLQVAKGG---LGLILKRLAEGEEASM  231 (231)
T ss_dssp             --------CTTSCCHHHHSCHH---HHHHHHHHHHHHHHCC
T ss_pred             --------CCCCCCHHHHHHhh---HHHHHHHHHccccccC
Confidence                    67899999999999   9999999999999764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=5.1e-43  Score=295.12  Aligned_cols=227  Identities=24%  Similarity=0.304  Sum_probs=209.6

Q ss_pred             hhccccc-cCCCcHHHHHHHcCCHHHHHHHH--------HcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcc
Q psy12892         11 EQLKATT-INGDTALHLAARKRDLDMVRILV--------DYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI   81 (315)
Q Consensus        11 ~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll--------~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~   81 (315)
                      .+++.+| ..|.||||+|+..|+.+++++|+        +.|++++..|..|.||||+|+..|+.+++++|+++|++++.
T Consensus       115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  194 (373)
T 2fo1_E          115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI  194 (373)
T ss_dssp             TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred             ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcc
Confidence            3578888 79999999999999998888776        88999999999999999999999999999999999999998


Q ss_pred             ccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCC---CCcccCCCCCCcHHHHHHHcC---CHH
Q psy12892         82 TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK---ANASITDHQDRTPMHLAAENG---HAS  155 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~~~~l~~a~~~~---~~~  155 (315)
                      .+.                      .|.||||+|+..|+.+++++|++.+   .+++..+..|.||||+|+..+   +.+
T Consensus       195 ~~~----------------------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~  252 (373)
T 2fo1_E          195 YNK----------------------SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA  252 (373)
T ss_dssp             CCT----------------------TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHH
T ss_pred             cCC----------------------CCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHH
Confidence            776                      7899999999999999999999988   789999999999999999998   899


Q ss_pred             HHHHHHHhcCccccc--------cccCCccHHHHHHHcCcHHHHHHHHhcC-------CCCCCcHHHHHHHcCCHHHHHH
Q psy12892        156 IIELLADKFRASIFE--------RTKENYNVLHLAAMYSREDVVKLLLNKK-------GIENYNVLHLAAMYSREDVVKL  220 (315)
Q Consensus       156 ~~~~Ll~~~~~~~~~--------~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-------~~~~~~~l~~A~~~~~~~~~~~  220 (315)
                      ++++|++. |++++.        .+..|.||||+|+..|+.+++++|++.+       +..|.||||+|+..|+.+++++
T Consensus       253 ~v~~Ll~~-g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~  331 (373)
T 2fo1_E          253 SAKLLVEK-GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY  331 (373)
T ss_dssp             HHHHHHHH-TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHC-CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999997 888875        5668999999999999999999999765       6679999999999999999999


Q ss_pred             HHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccc
Q psy12892        221 LLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGR  289 (315)
Q Consensus       221 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~  289 (315)
                      |++ .|++++.+                         +..|+||||+|+..   ++.+++++|+++|++
T Consensus       332 Ll~-~gad~~~~-------------------------d~~g~t~l~~A~~~---g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          332 LIQ-QGASVEAV-------------------------DATDHTARQLAQAN---NHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHH-TTCCSSCC-------------------------CSSSCCHHHHHHHT---TCHHHHHHHHTTC--
T ss_pred             HHH-cCCCccCC-------------------------CCCCCCHHHHHHHc---CCHHHHHHHHhcCcc
Confidence            999 99999985                         67899999999999   999999999999875

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=9.3e-42  Score=270.56  Aligned_cols=229  Identities=25%  Similarity=0.268  Sum_probs=209.1

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHH
Q psy12892         13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIA   92 (315)
Q Consensus        13 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   92 (315)
                      ++..|..|.|+|+.|+..|+++++++|++.|++++..+..|.||||+|+..|+.+++++|++++++++.....       
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-------   74 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD-------   74 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT-------
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCC-------
Confidence            5667889999999999999999999999999999999999999999999999999999999999988766543       


Q ss_pred             hhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccc
Q psy12892         93 AAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERT  172 (315)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  172 (315)
                                    .|.||||+|+..++.+++++|++.|++++..+..|.||||.|+..|+.+++++|+++ +.+++..+
T Consensus        75 --------------~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~  139 (240)
T 3eu9_A           75 --------------LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMD  139 (240)
T ss_dssp             --------------TTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCC
T ss_pred             --------------cCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccC
Confidence                          588999999999999999999999999999999999999999999999999999996 99999999


Q ss_pred             cCCccHHHHHHHcCc-HHHHHHHHhcC------C-CCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccc
Q psy12892        173 KENYNVLHLAAMYSR-EDVVKLLLNKK------G-IENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLT  244 (315)
Q Consensus       173 ~~~~~~l~~a~~~~~-~~~~~~Ll~~~------~-~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  244 (315)
                      ..|.|||++|+..++ .+++++|++.+      + ..|.||||.|+..++.+++++|++ .|++++..            
T Consensus       140 ~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~------------  206 (240)
T 3eu9_A          140 QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQ------------  206 (240)
T ss_dssp             TTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCB------------
T ss_pred             CCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCc------------
Confidence            999999999997665 78999999876      3 378899999999999999999999 89999885            


Q ss_pred             cchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceee
Q psy12892        245 VGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIR  292 (315)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~  292 (315)
                                   +..|.|||++|++.   ++.+++++|+++|++...
T Consensus       207 -------------~~~g~t~l~~A~~~---~~~~~v~~L~~~~~~~~~  238 (240)
T 3eu9_A          207 -------------NIKGESALDLAKQR---KNVWMINHLQEARQAKGY  238 (240)
T ss_dssp             -------------CTTSCBHHHHHHHT---TCHHHHHHHHHHC-----
T ss_pred             -------------CCCCCCHHHHHHHc---CcHHHHHHHHHhhhccCc
Confidence                         67899999999999   999999999999887643

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.9e-42  Score=279.94  Aligned_cols=243  Identities=19%  Similarity=0.186  Sum_probs=210.5

Q ss_pred             hHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccc
Q psy12892          3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASIT   82 (315)
Q Consensus         3 ~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~   82 (315)
                      ++|...   +++.+|.+|.||||+|+..|+.+++++|+++|++++..  +|.||||+|+..|+.+++++|+++|++++..
T Consensus        17 ~lL~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~   91 (285)
T 3kea_A           17 SFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQF   91 (285)
T ss_dssp             HHHHST---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCC
T ss_pred             HHHHhC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            445443   58999999999999999999999999999999999877  4899999999999999999999999999987


Q ss_pred             cccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCC-CcHHHHHHHcCCHHHHHHHH
Q psy12892         83 DHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQD-RTPMHLAAENGHASIIELLA  161 (315)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~Ll  161 (315)
                      +.                      .|.||||+|+..|+.+++++|++.|++++..+..| .||||+|+..|+.+++++|+
T Consensus        92 d~----------------------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll  149 (285)
T 3kea_A           92 DD----------------------KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL  149 (285)
T ss_dssp             CT----------------------TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH
T ss_pred             CC----------------------CCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            76                      79999999999999999999999999999999999 89999999999999999999


Q ss_pred             HhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcH-HHHHHHcCCHHHHHHHHhccCCccccCCC
Q psy12892        162 DKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNV-LHLAAMYSREDVVKLLLNKKGINVAALGG  234 (315)
Q Consensus       162 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~-l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  234 (315)
                      ++ +.+.... ..|.||||+|+..|+.+++++|++.+      +..|.|| ||+|+..++.+++++|++ +|++++..+ 
T Consensus       150 ~~-g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~-  225 (285)
T 3kea_A          150 SE-IPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSAN-  225 (285)
T ss_dssp             TT-SCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTT-
T ss_pred             hC-CCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCC-
Confidence            97 6655222 27899999999999999999999876      6678887 999999999999999999 999998852 


Q ss_pred             CCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhh
Q psy12892        235 EDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQI  312 (315)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  312 (315)
                                                     +.|+..   ++.+++++|+++|++++.....  ..+..+......++
T Consensus       226 -------------------------------~~a~~~---~~~~iv~~Ll~~g~~~~~~~~~--~~~~~~~~~~~~~i  267 (285)
T 3kea_A          226 -------------------------------LENVLL---DDAEIAKMIIEKHVEYKSDSYT--KDLDIVKNNKLDEI  267 (285)
T ss_dssp             -------------------------------GGGGTT---TCHHHHHHHHHHHHHHTTCTTT--TTCHHHHTCSHHHH
T ss_pred             -------------------------------hhhhhc---CCHHHHHHHHHcCCCCCCcccc--chHHHHhhhhHHHH
Confidence                                           245667   9999999999999998754432  23444444433333

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-42  Score=277.66  Aligned_cols=226  Identities=23%  Similarity=0.287  Sum_probs=172.0

Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHHcCCc--------ccccCCCCChHHHHHHhcCCH-HHHHHHHhccCCCccccc
Q psy12892         14 KATTINGDTALHLAARKRDLDMVRILVDYGTS--------VDIQNGEGQTALHIASAEGDE-ALVKYFYGAKANASITDH   84 (315)
Q Consensus        14 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------~~~~~~~g~t~l~~A~~~~~~-~~v~~Ll~~~~~~~~~~~   84 (315)
                      ..+|..+.++|+.||..|++++|++|++.|++        ++..+..+.|||+.|+..++. .++++|++.|++++..+.
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~   84 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ   84 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCT
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC
Confidence            45677888999999999999999999999875        456677899999999988765 588999999999998876


Q ss_pred             cchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhc
Q psy12892         85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKF  164 (315)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  164 (315)
                                            .|.||||+|+..|+.+++++|++.+++++..+..|.||++.|+..++.+++++|++. 
T Consensus        85 ----------------------~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-  141 (269)
T 4b93_B           85 ----------------------DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS-  141 (269)
T ss_dssp             ----------------------TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-
T ss_pred             ----------------------CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHC-
Confidence                                  799999999999999999999999999999999999999999999999999999996 


Q ss_pred             CccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCC
Q psy12892        165 RASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLT  238 (315)
Q Consensus       165 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  238 (315)
                      |++++..+..|.||||+|+..|+.+++++|++.|      +..|.||||+|+..|+.+++++|++ .|+|++.+      
T Consensus       142 g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~------  214 (269)
T 4b93_B          142 NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVL------  214 (269)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCC------
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCc------
Confidence            9999999999999999999999999999999887      6678999999999999999999999 99999985      


Q ss_pred             CCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCc-HHHHHHHHhhcccee
Q psy12892        239 GRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTA-TSILRALLSTAGREI  291 (315)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~-~~~i~~Ll~~g~~~~  291 (315)
                                         +..|+||||+|+++   +. .+++++|.+.++.++
T Consensus       215 -------------------d~~G~TpL~~A~~~---~~i~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          215 -------------------NKRQRTAVDCAEQN---SKIMELLQVVPSCVASLD  246 (269)
T ss_dssp             -------------------CTTSCCSGGGSCTT---CHHHHHTTC---------
T ss_pred             -------------------CCCCCCHHHHHHhC---CcHHHHHHHHHHhchhhh
Confidence                               67899999999988   75 456666666665543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.4e-40  Score=260.50  Aligned_cols=216  Identities=21%  Similarity=0.266  Sum_probs=194.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCcccc-cCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhh
Q psy12892         20 GDTALHLAARKRDLDMVRILVDYGTSVDI-QNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSV   98 (315)
Q Consensus        20 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   98 (315)
                      |.||||+||..|+.+++++|++.|.++.. .+..|.||||+|+..|+.+++++|+++|++++.....             
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-------------   68 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP-------------   68 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCC-------------
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccC-------------
Confidence            78999999999999999999999988654 7899999999999999999999999999555443311             


Q ss_pred             HHhhhhccCCChHHHHHHhcCCHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCc
Q psy12892         99 LANCLLMGEGQTALHIASAEGDEALVKYFYGAK--ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENY  176 (315)
Q Consensus        99 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  176 (315)
                            +..|.||||+|+..|+.+++++|++.|  .+++..+..|.||||+|+..|+.+++++|++. |++++..+..|.
T Consensus        69 ------~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~  141 (228)
T 2dzn_A           69 ------DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQ  141 (228)
T ss_dssp             ------CTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSC
T ss_pred             ------CCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCCCCC
Confidence                  117999999999999999999999998  88889999999999999999999999999997 999999999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcC-------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhh
Q psy12892        177 NVLHLAAMYSREDVVKLLLNKK-------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQ  249 (315)
Q Consensus       177 ~~l~~a~~~~~~~~~~~Ll~~~-------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (315)
                      ||||+|+..|+.+++++|++.+       +..|.||||+|+..++.+++++|++..|++++..                 
T Consensus       142 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~-----------------  204 (228)
T 2dzn_A          142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV-----------------  204 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCB-----------------
T ss_pred             CHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCcc-----------------
Confidence            9999999999999999999887       6679999999999999999999994399999985                 


Q ss_pred             hhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhh
Q psy12892        250 AYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLST  286 (315)
Q Consensus       250 ~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~  286 (315)
                              +..|.|||++|+..      +++++|+++
T Consensus       205 --------~~~g~t~l~~A~~~------~~~~~l~~~  227 (228)
T 2dzn_A          205 --------DNKGAKAEDVALNE------QVKKFFLNN  227 (228)
T ss_dssp             --------CTTSCBGGGGCSST------THHHHHHTT
T ss_pred             --------CCCCCcHHHHHHHH------HHHHHHHhc
Confidence                    77899999999887      566777664

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.6e-42  Score=274.53  Aligned_cols=223  Identities=21%  Similarity=0.211  Sum_probs=172.5

Q ss_pred             ccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCH-HHHHH
Q psy12892         48 IQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDE-ALVKY  126 (315)
Q Consensus        48 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~-~~v~~  126 (315)
                      .+|..+.++|+.|+..|+.++|++|++.+++.........              ...+..+.+||+.|+..+.. .+++.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~--------------~~~~~~~~t~L~~a~~~~~~~~~v~~   71 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTV--------------SAADPEFCHPLCQCPKCAPAQKRLAK   71 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccc--------------cccCccCCCHHHHHHHhCCHHHHHHH
Confidence            3566778999999999999999999999876432211100              01112688999999988765 58899


Q ss_pred             HHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CC
Q psy12892        127 FYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GI  200 (315)
Q Consensus       127 Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~  200 (315)
                      |++.|++++..+..|.||||+|+..|+.+++++|++. +++++..+..|.||+++|+..++.+++++|++.+      +.
T Consensus        72 Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~  150 (269)
T 4b93_B           72 VPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDL  150 (269)
T ss_dssp             ---CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCC
Confidence            9999999999999999999999999999999999996 9999999999999999999999999999999887      67


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHH
Q psy12892        201 ENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSIL  280 (315)
Q Consensus       201 ~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i  280 (315)
                      .|.||||+|+..|+.+++++|++ .|++++..                         +..|+||||+|+..   |+.+++
T Consensus       151 ~g~TpL~~A~~~g~~~~v~~Ll~-~gadvn~~-------------------------~~~g~t~Lh~A~~~---g~~~~v  201 (269)
T 4b93_B          151 SGNTPLIYACSGGHHELVALLLQ-HGASINAS-------------------------NNKGNTALHEAVIE---KHVFVV  201 (269)
T ss_dssp             TCCCHHHHHHHTTCGGGHHHHHH-TTCCTTCB-------------------------CTTSCBHHHHHHHT---TCHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHH-CCCCCCcc-------------------------ccCCCcHHHHHHHc---CCHHHH
Confidence            79999999999999999999999 99999985                         67899999999999   999999


Q ss_pred             HHHHhhccceeeeccCCceeEEEeecCch-hhhhc
Q psy12892        281 RALLSTAGREIRMTVDGTLILYYRGKDSK-AQIEE  314 (315)
Q Consensus       281 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~~~  314 (315)
                      ++|+++|+|++.+|..|+|||++|+++++ .++++
T Consensus       202 ~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~  236 (269)
T 4b93_B          202 ELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQ  236 (269)
T ss_dssp             HHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTT
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHH
Confidence            99999999999999999999999999887 45544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.9e-41  Score=264.48  Aligned_cols=214  Identities=20%  Similarity=0.220  Sum_probs=198.5

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhccCCC-ccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHH
Q psy12892         50 NGEGQTALHIASAEGDEALVKYFYGAKANA-SITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFY  128 (315)
Q Consensus        50 ~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll  128 (315)
                      +..+.+|||.|+..|+.+++++|++.+... +..+.                      .|.||||+|+..|+.+++++|+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------------------~g~t~L~~A~~~g~~~~v~~Ll   60 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQ----------------------DSRTALHWACSAGHTEIVEFLL   60 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCT----------------------TSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCC----------------------CCCCHHHHHHHcCcHHHHHHHH
Confidence            456789999999999999999999877543 33333                      7999999999999999999999


Q ss_pred             hCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCC
Q psy12892        129 GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIEN  202 (315)
Q Consensus       129 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~  202 (315)
                      +.|.+++..+..|.||||+|+..|+.+++++|+++ +.+++..+..|.||||+|+..++.+++++|++.+      +..|
T Consensus        61 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  139 (231)
T 3aji_A           61 QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD  139 (231)
T ss_dssp             HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            99999999999999999999999999999999996 9999999999999999999999999999999876      5678


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHH
Q psy12892        203 YNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRA  282 (315)
Q Consensus       203 ~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~  282 (315)
                      .||||.|+..++.+++++|++ .|++++.+                         +..|+||||+|+..   ++.+++++
T Consensus       140 ~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------------------~~~g~t~L~~A~~~---~~~~~v~~  190 (231)
T 3aji_A          140 ATAMHRAAAKGNLKMVHILLF-YKASTNIQ-------------------------DTEGNTPLHLACDE---ERVEEAKF  190 (231)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------------------CTTSCCHHHHHHHT---TCHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHh-cCCCcccc-------------------------CCCCCCHHHHHHHC---CCHHHHHH
Confidence            999999999999999999999 99999985                         67899999999999   99999999


Q ss_pred             HHhhccceeeeccCCceeEEEeecCchhhhhcC
Q psy12892        283 LLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       283 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                      |+++|++++.+|..|.||+++|++.++.+++++
T Consensus       191 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~l  223 (231)
T 3aji_A          191 LVTQGASIYIENKEEKTPLQVAKGGLGLILKRL  223 (231)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHH
Confidence            999999999999999999999999999998763

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2e-41  Score=274.98  Aligned_cols=225  Identities=17%  Similarity=0.166  Sum_probs=201.5

Q ss_pred             HcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCC
Q psy12892         29 RKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEG  108 (315)
Q Consensus        29 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (315)
                      +..+.+-+..|+..+ +++..|..|.||||+|+..|+.+++++|+++|++++..                        .|
T Consensus         8 ~~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------------------------~g   62 (285)
T 3kea_A            8 NTWKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL------------------------EN   62 (285)
T ss_dssp             GGCCHHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC------------------------TT
T ss_pred             HhcCHHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC------------------------CC
Confidence            344444444444444 57889999999999999999999999999999987765                        37


Q ss_pred             ChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCC-ccHHHHHHHcCc
Q psy12892        109 QTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN-YNVLHLAAMYSR  187 (315)
Q Consensus       109 ~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~~l~~a~~~~~  187 (315)
                      .||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++ |++++..+..| .||||+|+..|+
T Consensus        63 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~  141 (285)
T 3kea_A           63 EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLND  141 (285)
T ss_dssp             CCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCC
Confidence            8999999999999999999999999999999999999999999999999999997 99999999999 799999999999


Q ss_pred             HHHHHHHHhcC----CC-CCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcC
Q psy12892        188 EDVVKLLLNKK----GI-ENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQ  262 (315)
Q Consensus       188 ~~~~~~Ll~~~----~~-~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (315)
                      .+++++|++.+    +. .|.||||.|+..++.+++++|++ .|++++..                         +..|+
T Consensus       142 ~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~-------------------------~~~g~  195 (285)
T 3kea_A          142 VSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD-YMTSTNTN-------------------------NSLLF  195 (285)
T ss_dssp             HHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH-HHHHTCTT-------------------------CCCBC
T ss_pred             HHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH-cCCCCCcc-------------------------cCCCC
Confidence            99999999987    22 67899999999999999999999 89999984                         67788


Q ss_pred             Cc-ceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhhhcC
Q psy12892        263 TA-VHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       263 t~-L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                      || ||+|+..   ++.+++++|+++|++++.+|.       .|+..|+.+++++
T Consensus       196 t~~L~~A~~~---~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~  239 (285)
T 3kea_A          196 IPDIKLAIDN---KDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKM  239 (285)
T ss_dssp             CTTHHHHHHH---TCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHH
T ss_pred             ChHHHHHHHc---CCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHH
Confidence            87 9999999   999999999999999998884       5677899998864

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.1e-40  Score=259.88  Aligned_cols=209  Identities=18%  Similarity=0.173  Sum_probs=191.8

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhccCCCcc-ccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCC
Q psy12892         53 GQTALHIASAEGDEALVKYFYGAKANASI-TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK  131 (315)
Q Consensus        53 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~  131 (315)
                      |.||||+|+..|+.+++++|++.+++... .+.                      .|.||||+|+..|+.+++++|++.+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~----------------------~g~t~L~~A~~~~~~~~v~~Ll~~~   59 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQ----------------------DGRIPLHWSVSFQAHEITSFLLSKM   59 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCT----------------------TSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCC----------------------CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            78999999999999999999999887654 333                      7999999999999999999999999


Q ss_pred             --CCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHhcC--ccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CC
Q psy12892        132 --ANASI-TDHQDRTPMHLAAENGHASIIELLADKFR--ASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GI  200 (315)
Q Consensus       132 --~~~~~-~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~  200 (315)
                        .+++. .+..|.||||+|+..|+.+++++|+++ +  .+++..+..|.||||+|+..++.+++++|++.+      +.
T Consensus        60 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  138 (228)
T 2dzn_A           60 ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK  138 (228)
T ss_dssp             TTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSS-SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             ccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCC
Confidence              55655 788999999999999999999999996 6  888999999999999999999999999999887      66


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhccC-CccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHH
Q psy12892        201 ENYNVLHLAAMYSREDVVKLLLNKKG-INVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSI  279 (315)
Q Consensus       201 ~~~~~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~  279 (315)
                      .|.||||.|+..++.+++++|++ .| .+++..                         +..|+||||+|+..   ++.++
T Consensus       139 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------------------d~~g~t~L~~A~~~---~~~~~  189 (228)
T 2dzn_A          139 FNQIPLHRAASVGSLKLIELLCG-LGKSAVNWQ-------------------------DKQGWTPLFHALAE---GHGDA  189 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHT-TTCCCSCCC-------------------------CTTSCCHHHHHHHT---TCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCcccccCc-------------------------CCCCCCHHHHHHHc---CCHHH
Confidence            79999999999999999999999 77 899884                         67899999999999   99999


Q ss_pred             HHHHH-hhccceeeeccCCceeEEEeecCchhhhh
Q psy12892        280 LRALL-STAGREIRMTVDGTLILYYRGKDSKAQIE  313 (315)
Q Consensus       280 i~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  313 (315)
                      +++|+ ++|+|++.+|..|.||+++|++.+..+++
T Consensus       190 v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~~~~~l  224 (228)
T 2dzn_A          190 AVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF  224 (228)
T ss_dssp             HHHHHHHHCCCSCCBCTTSCBGGGGCSSTTHHHHH
T ss_pred             HHHHHHhcCCCCCccCCCCCcHHHHHHHHHHHHHH
Confidence            99999 89999999999999999999998877765

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.8e-40  Score=278.05  Aligned_cols=265  Identities=21%  Similarity=0.158  Sum_probs=217.3

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhc----cC
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA----KA   77 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~----~~   77 (315)
                      +++|++++ .+++.+|..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++    ++
T Consensus        36 v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  112 (364)
T 3ljn_A           36 VRRLIETG-VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAKERGQ  112 (364)
T ss_dssp             HHHHHHTT-CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcCCHHHHHHHHHhccccCC
Confidence            56777775 46999999999999999999999999999999997653  5789999999999999999999998    66


Q ss_pred             CCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcC--CHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHH
Q psy12892         78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG--DEALVKYFYGAKANASITDHQDRTPMHLAAENGHAS  155 (315)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~  155 (315)
                      +++...........     ........+..|.||||+|+..|  +.+++++|++.|++++..+..|.||||+|+..|+.+
T Consensus       113 ~~~~~~~~~~~~~~-----~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~  187 (364)
T 3ljn_A          113 MPESLLNECDEREV-----NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE  187 (364)
T ss_dssp             CHHHHHTCCCCCCE-----EEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CHHHHHhhcchHhh-----hhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence            65541000000000     00000011237999999999999  999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcc-----ccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy12892        156 IIELLADKFRAS-----IFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNK  224 (315)
Q Consensus       156 ~~~~Ll~~~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~  224 (315)
                      ++++|++. +.+     ++..+..|.||||+|+..|+.+++++|++.+      +..|.||||+|+..++.+++++|++ 
T Consensus       188 ~v~~Ll~~-g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-  265 (364)
T 3ljn_A          188 ALDLMMDT-VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQ-  265 (364)
T ss_dssp             HHHHHHHH-CSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHH-
T ss_pred             HHHHHHhc-ccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHH-
Confidence            99999996 777     9999999999999999999999999999987      6789999999999999999999999 


Q ss_pred             cCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceee
Q psy12892        225 KGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIR  292 (315)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~  292 (315)
                      .|.+++..+.....+....             .+..++||++.|+..   +..+.+..|+..+++...
T Consensus       266 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~aa~~---~~~~~v~~ll~~~~~~~~  317 (364)
T 3ljn_A          266 KTDVFLIQACPYHNGTTVL-------------PDRVVWLDFVPAAAD---PSKQEVLQLLQEKLDEVV  317 (364)
T ss_dssp             HSCHHHHHTCTTBSSSSBC-------------GGGCCCCTTSCSSCC---HHHHHHHHHHHHHHHHHH
T ss_pred             cCCchhhhcCcccCccccc-------------ccccccccchhhhhc---cCHHHHHHHHHHHHHHHh
Confidence            8888765442222222221             267789999999999   988888889888877643

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.5e-39  Score=252.36  Aligned_cols=207  Identities=23%  Similarity=0.266  Sum_probs=191.8

Q ss_pred             ChhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccC-CC
Q psy12892          1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA-NA   79 (315)
Q Consensus         1 ~~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~-~~   79 (315)
                      ++++|++++....+.+|.+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++++ ++
T Consensus         6 ~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~   85 (223)
T 2f8y_A            6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL   85 (223)
T ss_dssp             CEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCT
T ss_pred             HHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            45677777776555668999999999999999999999999999999999999999999999999999999999987 66


Q ss_pred             ccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHH
Q psy12892         80 SITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIEL  159 (315)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  159 (315)
                      +..+.                      .|.||||+|+..++.+++++|++.|.+++..+..|.||||+|+..|+.+++++
T Consensus        86 ~~~~~----------------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  143 (223)
T 2f8y_A           86 DARMH----------------------DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV  143 (223)
T ss_dssp             TCCCT----------------------TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             ccCCC----------------------CCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            66655                      78999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCcccc
Q psy12892        160 LADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAA  231 (315)
Q Consensus       160 Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~  231 (315)
                      |++. |++++..+..|.||||+|+..++.+++++|++.+      +..|.||+++|+..++.+++++|++ +|+....
T Consensus       144 Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~-~g~~~~~  219 (223)
T 2f8y_A          144 LLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE-YNLVRSP  219 (223)
T ss_dssp             HHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCSSCC
T ss_pred             HHHc-CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHH-cCCCccc
Confidence            9997 9999999999999999999999999999999987      5678999999999999999999999 8887543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-41  Score=280.90  Aligned_cols=242  Identities=15%  Similarity=0.114  Sum_probs=197.1

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCccccc-----------------CCCCChHHHHHHhcC
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQ-----------------NGEGQTALHIASAEG   64 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-----------------~~~g~t~l~~A~~~~   64 (315)
                      .++|++++. +++.++..|.|+++     |+.++++.|+++|++++..                 .....+.+|.|+..+
T Consensus        35 v~~ll~~ga-~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~  108 (327)
T 1sw6_A           35 TSDFLSSPL-KIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSL  108 (327)
T ss_dssp             CCSTTTSSC-CCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHH
T ss_pred             HHHHhhCCc-ccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhh
Confidence            456666654 58999999999987     8999999999999876541                 111123357788888


Q ss_pred             CHHHHHHHHhccCCCcc-ccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCc
Q psy12892         65 DEALVKYFYGAKANASI-TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRT  143 (315)
Q Consensus        65 ~~~~v~~Ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  143 (315)
                      ..+++++|++.|++++. .+.                      .|.||||+|+..|+.+++++|++.|++++..+..|.|
T Consensus       109 ~~~~~~~l~~~g~dvn~~~d~----------------------~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~T  166 (327)
T 1sw6_A          109 LQEVNDAFPNTQLNLNIPVDE----------------------HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES  166 (327)
T ss_dssp             HHHHHHHCTTSCCCSCSCCST----------------------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCC
T ss_pred             HHHHHHHHHhcCCCcccccCC----------------------CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence            88999999999999988 565                      7999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCC---HHHHHHHHHhcCccccccccCCccHHHHHHH----cCcHHHHHHHHhc-------------------
Q psy12892        144 PMHLAAENGH---ASIIELLADKFRASIFERTKENYNVLHLAAM----YSREDVVKLLLNK-------------------  197 (315)
Q Consensus       144 ~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~----~~~~~~~~~Ll~~-------------------  197 (315)
                      |||+|+..|+   .++++.|++....+++..+..|+||||+|+.    .|+.+++++|++.                   
T Consensus       167 pLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~  246 (327)
T 1sw6_A          167 CLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE  246 (327)
T ss_dssp             HHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---
T ss_pred             HHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhc
Confidence            9999999998   6888888887557899999999999999999    8999999999865                   


Q ss_pred             -C------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeec
Q psy12892        198 -K------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCS  270 (315)
Q Consensus       198 -~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~  270 (315)
                       +      +..|.||||.|+.      +++|++ .  +++.+                         +..|+||||+|+.
T Consensus       247 ~g~~~~~~~~~g~t~L~~a~~------~~~Ll~-~--~~n~~-------------------------d~~G~TpLh~A~~  292 (327)
T 1sw6_A          247 KESKPNDKNGERKDSILENLD------LKWIIA-N--MLNAQ-------------------------DSNGDTCLNIAAR  292 (327)
T ss_dssp             -------------CHHHHHCS------HHHHHH-H--TTTCC-------------------------CTTSCCHHHHHHH
T ss_pred             ccCCcccccccCCChhHHHHH------HHHHHH-h--CCCCC-------------------------CCCCCCHHHHHHH
Confidence             2      5678899999985      899998 5  46653                         6789999999999


Q ss_pred             cCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCc
Q psy12892        271 RQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDS  308 (315)
Q Consensus       271 ~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  308 (315)
                      .   ++.+++++|+++|+|++.+|..|.|||++|+++|
T Consensus       293 ~---g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          293 L---GNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             H---CCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             c---CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            9   9999999999999999999999999999999876

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.2e-39  Score=255.71  Aligned_cols=209  Identities=23%  Similarity=0.247  Sum_probs=193.7

Q ss_pred             CCHHHHHHHHHcCCccccc-CCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCC
Q psy12892         31 RDLDMVRILVDYGTSVDIQ-NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQ  109 (315)
Q Consensus        31 ~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (315)
                      |+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|+++|++++..+.                      .|.
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------------------~g~   59 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN----------------------MGR   59 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------------------TSC
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------------------CCC
Confidence            6788999999999998865 88999999999999999999999999999988776                      789


Q ss_pred             hHHHHHHhcCCHHHHHHHHhCCC-CcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcH
Q psy12892        110 TALHIASAEGDEALVKYFYGAKA-NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRE  188 (315)
Q Consensus       110 ~~l~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~  188 (315)
                      ||||+|+..++.+++++|++.+. +++..+..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..++.
T Consensus        60 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~  138 (223)
T 2f8y_A           60 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNV  138 (223)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcCcCCCCCcHHHHHHHcCCH
Confidence            99999999999999999999887 8888899999999999999999999999996 999999999999999999999999


Q ss_pred             HHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcC
Q psy12892        189 DVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQ  262 (315)
Q Consensus       189 ~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (315)
                      +++++|++.+      +..|.||||+|+..++.+++++|++ .|++++.+                         +..|.
T Consensus       139 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~-------------------------~~~g~  192 (223)
T 2f8y_A          139 DAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD-HFANRDIT-------------------------DHMDR  192 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------------------CTTCC
T ss_pred             HHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCccc-------------------------cccCC
Confidence            9999999887      5678999999999999999999999 99999885                         67789


Q ss_pred             CcceeeeccCCCCcHHHHHHHHhhcccee
Q psy12892        263 TAVHLVCSRQTGTATSILRALLSTAGREI  291 (315)
Q Consensus       263 t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~  291 (315)
                      |||++|++.   ++.+++++|+++|+...
T Consensus       193 t~l~~A~~~---~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          193 LPRDIAQER---MHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             CHHHHHHHT---TCHHHHHHHHHTTCSSC
T ss_pred             CHHHHHHHh---cchHHHHHHHHcCCCcc
Confidence            999999999   99999999999998654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=6.2e-40  Score=259.45  Aligned_cols=218  Identities=24%  Similarity=0.284  Sum_probs=180.5

Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHHcCC----cccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhh
Q psy12892         14 KATTINGDTALHLAARKRDLDMVRILVDYGT----SVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQR   89 (315)
Q Consensus        14 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   89 (315)
                      +.+|.+|.||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|+++|++++..+.     
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----   76 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF-----   76 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT-----
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-----
Confidence            4578899999999999999999999998765    6888999999999999999999999999999999988776     


Q ss_pred             HHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCC------cccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q psy12892         90 DIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN------ASITDHQDRTPMHLAAENGHASIIELLADK  163 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  163 (315)
                                       .|.||||+|+..|+.+++++|++.+.+      ++..+..|.||||+|+..|+.+++++|++.
T Consensus        77 -----------------~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  139 (236)
T 1ikn_D           77 -----------------RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL  139 (236)
T ss_dssp             -----------------TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             -----------------CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence                             789999999999999999999998875      455677888899999998888899888886


Q ss_pred             cCccccccccCCccHHHHHHHcCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCcc
Q psy12892        164 FRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDL  243 (315)
Q Consensus       164 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  243 (315)
                       |++++..+.                          ..|.||||+|+..++.+++++|++ .|++++..           
T Consensus       140 -g~~~~~~~~--------------------------~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~-----------  180 (236)
T 1ikn_D          140 -GADVNAQEP--------------------------CNGRTALHLAVDLQNPDLVSLLLK-CGADVNRV-----------  180 (236)
T ss_dssp             -TCCTTCCCT--------------------------TTCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCC-----------
T ss_pred             -CCCCCCCCC--------------------------CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-----------
Confidence             777765543                          146677777777778888999998 89999885           


Q ss_pred             ccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhcccee--eeccCCceeEEEeecCch
Q psy12892        244 TVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREI--RMTVDGTLILYYRGKDSK  309 (315)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~~  309 (315)
                                    +..|.||||+|+..   ++.+++++|+++|+++.  .++..|.||.+.+.....
T Consensus       181 --------------~~~g~tpl~~A~~~---~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  231 (236)
T 1ikn_D          181 --------------TYQGYSPYQLTWGR---PSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTE  231 (236)
T ss_dssp             --------------CTTCCCGGGGCTTS---SCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-----
T ss_pred             --------------cCCCCCHHHHHHcc---CchHHHHHHHHcchhhhhcCCccchHHHHhhhccccc
Confidence                          67899999999999   99999999999999887  889999999998876544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.2e-39  Score=258.46  Aligned_cols=219  Identities=21%  Similarity=0.221  Sum_probs=201.3

Q ss_pred             ccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHH
Q psy12892         46 VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK  125 (315)
Q Consensus        46 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~  125 (315)
                      ++..|..|.++|+.|+..|+.+++++|++.|++++..+.                      .|.||||+|+..|+.++++
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~----------------------~g~t~L~~A~~~~~~~~v~   59 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK----------------------ENVTLLHWAAINNRIDLVK   59 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------------------TSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCC----------------------CCCCHHHHHHHhCCHHHHH
Confidence            445678899999999999999999999999999988776                      7899999999999999999


Q ss_pred             HHHhCCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------
Q psy12892        126 YFYGAKANASITD-HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------  198 (315)
Q Consensus       126 ~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------  198 (315)
                      +|++.+.+++... ..|.|||++|+..|+.+++++|++. +.+++..+..+.|||++|+..++.+++++|++.+      
T Consensus        60 ~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~  138 (240)
T 3eu9_A           60 YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM  138 (240)
T ss_dssp             HHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcccc
Confidence            9999999887655 4499999999999999999999996 9999999999999999999999999999999876      


Q ss_pred             CCCCCcHHHHHHHcCC-HHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcH
Q psy12892        199 GIENYNVLHLAAMYSR-EDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTAT  277 (315)
Q Consensus       199 ~~~~~~~l~~A~~~~~-~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~  277 (315)
                      +..|.||||.|+..++ .+++++|++ .|++++..+                        ...|.||||+|+..   ++.
T Consensus       139 ~~~g~t~l~~a~~~~~~~~~~~~L~~-~~~~~~~~~------------------------~~~g~t~L~~A~~~---~~~  190 (240)
T 3eu9_A          139 DQNGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNLGD------------------------KYHKNTALHWAVLA---GNT  190 (240)
T ss_dssp             CTTSCCHHHHHHHHCCSSTTHHHHHH-TTCCTTCCC------------------------TTTCCCHHHHHHHH---TCH
T ss_pred             CCCCCcHHHHHHHhCChHHHHHHHHh-cCCCcchhh------------------------ccCCCcHHHHHHHc---CCH
Confidence            6678999999997665 899999999 999999852                        23788999999999   999


Q ss_pred             HHHHHHHhhccceeeeccCCceeEEEeecCchhhhhcC
Q psy12892        278 SILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       278 ~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                      +++++|+++|++++.+|..|.|||++|++.|+.+++++
T Consensus       191 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~  228 (240)
T 3eu9_A          191 TVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINH  228 (240)
T ss_dssp             HHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            99999999999999999999999999999999999874

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.1e-38  Score=258.93  Aligned_cols=219  Identities=22%  Similarity=0.287  Sum_probs=175.8

Q ss_pred             ccccCCCCChHHHHHHhcCCHHHHHHHHhccCC---CccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHH
Q psy12892         46 VDIQNGEGQTALHIASAEGDEALVKYFYGAKAN---ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA  122 (315)
Q Consensus        46 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~  122 (315)
                      ++..|..|.||||+|+..|+.+++++|+++|++   ++..+.                      .|.||||+|+..|+.+
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~----------------------~g~t~L~~A~~~g~~~   59 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND----------------------LGQTALHLAAILGEAS   59 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCT----------------------TSCCHHHHHHHHTCHH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC----------------------CCCCHHHHHHHcCCHH
Confidence            356789999999999999999999999999998   444444                      7999999999999999


Q ss_pred             HHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccc-------------cccCCccHHHHHHHcCcHH
Q psy12892        123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFE-------------RTKENYNVLHLAAMYSRED  189 (315)
Q Consensus       123 ~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~-------------~~~~~~~~l~~a~~~~~~~  189 (315)
                      ++++|++.|++++..+..|.||||+|+..|+.+++++|+++ +.....             ....+.++++.++..+...
T Consensus        60 ~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (282)
T 1oy3_D           60 TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN  138 (282)
T ss_dssp             HHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSS-CCSSCCCC------------------------------
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhcc-CCCCchhhHHHHhhcccccCcchhcchhhhccccccch
Confidence            99999999999999999999999999999999999999986 544321             1122345555555544333


Q ss_pred             HHHHH-------HhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcC
Q psy12892        190 VVKLL-------LNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQ  262 (315)
Q Consensus       190 ~~~~L-------l~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (315)
                      ....+       ++..+..|.||||.|+..++.+++++|++ .|++++..+                        +..|+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~------------------------~~~g~  193 (282)
T 1oy3_D          139 EEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-AGADLNKPE------------------------PTCGR  193 (282)
T ss_dssp             -----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCC------------------------TTTCC
T ss_pred             hhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCCCCC------------------------CCCCc
Confidence            33222       23347789999999999999999999999 999999852                        34599


Q ss_pred             CcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhhhcC
Q psy12892        263 TAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       263 t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                      ||||+|+..   ++.+++++|+++|++++.+|..|.|||++|+++|+.+++++
T Consensus       194 tpL~~A~~~---~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~  243 (282)
T 1oy3_D          194 TPLHLAVEA---QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL  243 (282)
T ss_dssp             CHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred             CHHHHHHHc---CCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHH
Confidence            999999999   99999999999999999999999999999999999999874

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.7e-37  Score=247.27  Aligned_cols=214  Identities=17%  Similarity=0.143  Sum_probs=173.6

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHcCCcccc----cCCCCChHHHHHHhc---CCHHHHHHHHhccCCCccccccch
Q psy12892         19 NGDTALHLAARKRDLD----MVRILVDYGTSVDI----QNGEGQTALHIASAE---GDEALVKYFYGAKANASITDHQGI   87 (315)
Q Consensus        19 ~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~----~~~~g~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~   87 (315)
                      .|+||||.||..|+.+    ++++|++.|++++.    .|..|.||||+|+..   |+.+++++|+++|++++.....- 
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~-   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV-   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG-
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc-
Confidence            4899999999999997    66777789999998    899999999999999   99999999999998776433100 


Q ss_pred             hhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCC-------------CCcHHHHHHHcCCH
Q psy12892         88 QRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQ-------------DRTPMHLAAENGHA  154 (315)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-------------~~~~l~~a~~~~~~  154 (315)
                      ..          .....+..|.||||+|+..|+.+++++|++.|++++..+..             |.||||+|+..|+.
T Consensus        80 ~~----------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~  149 (256)
T 2etb_A           80 NA----------QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW  149 (256)
T ss_dssp             GC----------CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCH
T ss_pred             cc----------ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCH
Confidence            00          00000126999999999999999999999999999998876             99999999999999


Q ss_pred             HHHHHHHHh--cCccccccccCCccHHHHHHH--cCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCcc-
Q psy12892        155 SIIELLADK--FRASIFERTKENYNVLHLAAM--YSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV-  229 (315)
Q Consensus       155 ~~~~~Ll~~--~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~-  229 (315)
                      +++++|++.  .|++++..+..|+||||+|+.  .++.+..+.+                    .+++++|++ .|+++ 
T Consensus       150 ~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~--------------------~~iv~~Ll~-~ga~~~  208 (256)
T 2etb_A          150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALV--------------------IHMYDGLLQ-MGARLC  208 (256)
T ss_dssp             HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH--------------------HHHHHHHHH-HHHHHS
T ss_pred             HHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHH--------------------HHHHHHHHH-cCCCcc
Confidence            999999993  399999988888888888887  5666643322                    347788887 78777 


Q ss_pred             ------ccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceee
Q psy12892        230 ------AALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIR  292 (315)
Q Consensus       230 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~  292 (315)
                            +.+                         +..|+||||+|+..   ++.+++++|+++|+++..
T Consensus       209 ~~~~~~~~~-------------------------d~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          209 PTVQLEEIS-------------------------NHQGLTPLKLAAKE---GKIEIFRHILQREFSGAA  249 (256)
T ss_dssp             TTCCGGGCC-------------------------CTTSCCHHHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccc-------------------------CCCCCCHHHHHHHh---CCHHHHHHHHhCCCCCCC
Confidence                  553                         67788888888888   888888888888877653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.8e-35  Score=227.99  Aligned_cols=187  Identities=24%  Similarity=0.283  Sum_probs=174.8

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHcCC-cccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhh
Q psy12892         17 TINGDTALHLAARKRDLDMVRILVDYGT-SVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAG   95 (315)
Q Consensus        17 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~   95 (315)
                      +..+.||||.|+..|+.+.++.|++.+. +++..|..|.||||+|+..|+.+++++|+++|++++..+.           
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----------   70 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS-----------   70 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----------
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-----------
Confidence            3578999999999999999999998876 9999999999999999999999999999999999988776           


Q ss_pred             hhhHHhhhhccCCChHHHHHHhcCCHHHHHHHH-hCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccC
Q psy12892         96 TSVLANCLLMGEGQTALHIASAEGDEALVKYFY-GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE  174 (315)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  174 (315)
                                 .|.||||+|+..|+.+++++|+ ..+.+++..+..|.||||+|+..|+.+++++|++..+.+++..+..
T Consensus        71 -----------~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  139 (201)
T 3hra_A           71 -----------ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF  139 (201)
T ss_dssp             -----------TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTT
T ss_pred             -----------CCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC
Confidence                       7899999999999999999999 6777999999999999999999999999999999844999999999


Q ss_pred             CccHHHHHHHcCc-----HHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccC
Q psy12892        175 NYNVLHLAAMYSR-----EDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKG  226 (315)
Q Consensus       175 ~~~~l~~a~~~~~-----~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~  226 (315)
                      |.||||+|+..++     .+++++|++.+      +..|.||||+|+..++.+++++|++ +|
T Consensus       140 g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~G  201 (201)
T 3hra_A          140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ-YN  201 (201)
T ss_dssp             SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT-CC
T ss_pred             CCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh-cC
Confidence            9999999999997     99999999887      6778999999999999999999998 55

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.3e-35  Score=220.83  Aligned_cols=154  Identities=33%  Similarity=0.506  Sum_probs=144.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHh
Q psy12892         22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLAN  101 (315)
Q Consensus        22 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
                      ++|+.||+.|+.++|++|+++|++++..|..|.||||+|+..++.+++++|+++|++++..+.                 
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~-----------------   68 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-----------------   68 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhcc-----------------
Confidence            469999999999999999999999999999999999999999999999999999999998876                 


Q ss_pred             hhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHH
Q psy12892        102 CLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHL  181 (315)
Q Consensus       102 ~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~  181 (315)
                           .|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|++. |++++..+..|+|||++
T Consensus        69 -----~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~  142 (169)
T 4gpm_A           69 -----DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDL  142 (169)
T ss_dssp             -----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             -----CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHH
Confidence                 799999999999999999999999999999999999999999999999999999996 99999999888888888


Q ss_pred             HHHcCcHHHHHHHHhcC
Q psy12892        182 AAMYSREDVVKLLLNKK  198 (315)
Q Consensus       182 a~~~~~~~~~~~Ll~~~  198 (315)
                      |+..|+.+++++|+++|
T Consensus       143 A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A          143 AREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             HHHTTCHHHHHHHHTC-
T ss_pred             HHHcCCHHHHHHHHHCC
Confidence            88888888888888776

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=4.4e-37  Score=248.38  Aligned_cols=237  Identities=18%  Similarity=0.149  Sum_probs=169.3

Q ss_pred             hccccccCCCcHHHHHHHcCCHHHHHHHHH----cCCccc----ccCCCCChHHHHHHhc---CCHHHHHHHHhccCCCc
Q psy12892         12 QLKATTINGDTALHLAARKRDLDMVRILVD----YGTSVD----IQNGEGQTALHIASAE---GDEALVKYFYGAKANAS   80 (315)
Q Consensus        12 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~----~~~~~g~t~l~~A~~~---~~~~~v~~Ll~~~~~~~   80 (315)
                      ..+.+|..|.||||.||..|+.++|+.|++    .+.+++    ..+..|.||||+|+..   |+.+++++|+++|++..
T Consensus         5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~   84 (273)
T 2pnn_A            5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD   84 (273)
T ss_dssp             ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT
T ss_pred             cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc
Confidence            356789999999999999999999998886    566665    3478999999999986   99999999999987533


Q ss_pred             cccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCC--------------CCCcHHH
Q psy12892         81 ITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDH--------------QDRTPMH  146 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~--------------~~~~~l~  146 (315)
                      ....     ....      .....+..|.||||+|+..|+.+++++|++.|++++..+.              .|.||||
T Consensus        85 ~~~~-----~i~~------~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~  153 (273)
T 2pnn_A           85 SLKQ-----FVNA------SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLS  153 (273)
T ss_dssp             CHHH-----HHTC------CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHH
T ss_pred             chhH-----Hhhc------ccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHH
Confidence            2100     0000      0000112789999999999999999999999999998886              7899999


Q ss_pred             HHHHcCCHHHHHHHHHh--cCccccccccCCccHHHHHHHcCc--HHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy12892        147 LAAENGHASIIELLADK--FRASIFERTKENYNVLHLAAMYSR--EDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLL  222 (315)
Q Consensus       147 ~a~~~~~~~~~~~Ll~~--~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll  222 (315)
                      +|+..|+.+++++|++.  .|++++..+..|+||||+|+..++  .+..+++                    .+++++|+
T Consensus       154 ~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~--------------------~~~v~~Ll  213 (273)
T 2pnn_A          154 LAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV--------------------TSMYNEIL  213 (273)
T ss_dssp             HHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH--------------------HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHH--------------------HHHHHHHH
Confidence            99999999999999983  388888888888888888887664  2222221                    56888888


Q ss_pred             hccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhcc-ceeeeccCCceeE
Q psy12892        223 NKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAG-REIRMTVDGTLIL  301 (315)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~-~~~~~~~~g~t~l  301 (315)
                      + .|++++.......                  .++..|+||||+|+..   ++.+++++|+++|+ ||......+.+|-
T Consensus       214 ~-~ga~~n~~~~~~~------------------~~d~~g~TpL~~A~~~---g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          214 I-LGAKLHPTLKLEE------------------ITNRKGLTPLALAASS---GKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             H-HHHHHCTTCCGGG------------------CCCTTSCCHHHHHHHT---TCHHHHHHHHHHHTC-------------
T ss_pred             H-hhhhccccccccc------------------ccCCCCCCHHHHHHHh---ChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence            8 8888863100000                  0267899999999999   99999999999999 8888777776654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=5e-35  Score=225.55  Aligned_cols=187  Identities=24%  Similarity=0.248  Sum_probs=174.5

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhccC-CCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHH
Q psy12892         50 NGEGQTALHIASAEGDEALVKYFYGAKA-NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFY  128 (315)
Q Consensus        50 ~~~g~t~l~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll  128 (315)
                      +..+.||||.|+..|+.++++.|++.+. +++..+.                      .|.||||+|+..|+.+++++|+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------------------~g~t~L~~A~~~~~~~~v~~Ll   59 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT----------------------EGNTPLNIAVHNNDIEIAKALI   59 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT----------------------TSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC----------------------CCCCHHHHHHHcCCHHHHHHHH
Confidence            3567899999999999999999998877 7777765                      7899999999999999999999


Q ss_pred             hCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC-------CCC
Q psy12892        129 GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK-------GIE  201 (315)
Q Consensus       129 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-------~~~  201 (315)
                      +.|++++..+..|.||||+|+..|+.+++++|++..+.+++..+..|.||||+|+..++.+++++|++.+       +..
T Consensus        60 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  139 (201)
T 3hra_A           60 DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF  139 (201)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTT
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC
Confidence            9999999999999999999999999999999997778899999999999999999999999999999877       567


Q ss_pred             CCcHHHHHHHcCC-----HHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCc
Q psy12892        202 NYNVLHLAAMYSR-----EDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTA  276 (315)
Q Consensus       202 ~~~~l~~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~  276 (315)
                      |.||||.|+..++     .+++++|++ .|++++.+                         +..|.||||+|+..   ++
T Consensus       140 g~t~L~~A~~~~~~~~~~~~~v~~Ll~-~ga~~~~~-------------------------~~~g~t~l~~A~~~---~~  190 (201)
T 3hra_A          140 GYTALIEAVGLREGNQLYQDIVKLLME-NGADQSIK-------------------------DNSGRTAMDYANQK---GY  190 (201)
T ss_dssp             SCCHHHHHHHSSCCSHHHHHHHHHHHH-TTCCTTCC-------------------------CTTSCCHHHHHHHH---TC
T ss_pred             CCCHHHHHHHhccchhhHHHHHHHHHH-CCCCCCcc-------------------------CCCCCCHHHHHHHc---CC
Confidence            8999999999998     999999999 99999985                         67899999999999   99


Q ss_pred             HHHHHHHHhhc
Q psy12892        277 TSILRALLSTA  287 (315)
Q Consensus       277 ~~~i~~Ll~~g  287 (315)
                      .+++++|+++|
T Consensus       191 ~~~~~~Ll~~G  201 (201)
T 3hra_A          191 TEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HhHHHHHHhcC
Confidence            99999999987

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-36  Score=248.51  Aligned_cols=238  Identities=19%  Similarity=0.199  Sum_probs=197.0

Q ss_pred             HHHHcCCHHHHHHHHHcCCcccc---------cCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhh
Q psy12892         26 LAARKRDLDMVRILVDYGTSVDI---------QNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGT   96 (315)
Q Consensus        26 ~A~~~~~~~~v~~Ll~~g~~~~~---------~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   96 (315)
                      .++..+..+.++.++....++..         .+..|.|||+.|+..|+.+++++|+++|++++..+.            
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~------------   71 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANV------------   71 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT------------
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCC------------
Confidence            46777888888888877655332         233567999999999999999999999999988776            


Q ss_pred             hhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCc
Q psy12892         97 SVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENY  176 (315)
Q Consensus        97 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  176 (315)
                                .|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++ |++++..+..|.
T Consensus        72 ----------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~  140 (299)
T 1s70_B           72 ----------DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGD  140 (299)
T ss_dssp             ----------TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSC
T ss_pred             ----------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCC
Confidence                      799999999999999999999999999999999999999999999999999999997 999999999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHH
Q psy12892        177 NVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVY  256 (315)
Q Consensus       177 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (315)
                      |||++|+..++.+++++++......-... ...........+..++. .+......                        
T Consensus       141 t~l~~A~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~~~~~~~------------------------  194 (299)
T 1s70_B          141 TPLDIAEEEAMEELLQNEVNRQGVDIEAA-RKEEERIMLRDARQWLN-SGHINDVR------------------------  194 (299)
T ss_dssp             CHHHHCCSHHHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHHHHHHH-HTCCCCCC------------------------
T ss_pred             CHHHHHHhcchHHHHHHHHhhcCCCchhh-hhhhhhHHHHHHHHHHh-ccCcchhh------------------------
Confidence            99999999999999999987643221111 11111112234445555 34333322                        


Q ss_pred             HhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhhhcC
Q psy12892        257 LISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       257 ~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                      .+..|.||||+|+..   |+.+++++|+++|++++.+|..|.||||+|++.|+.+++++
T Consensus       195 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~  250 (299)
T 1s70_B          195 HAKSGGTALHVAAAK---GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI  250 (299)
T ss_dssp             CTTTCCCHHHHHHHH---TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             hcCCCCCHHHHHHHC---CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHH
Confidence            267799999999999   99999999999999999999999999999999999999863

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.3e-36  Score=240.41  Aligned_cols=195  Identities=22%  Similarity=0.309  Sum_probs=160.4

Q ss_pred             ccCCCCChHHHHHHhcCCHHHHHHHHhccC----CCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHH
Q psy12892         48 IQNGEGQTALHIASAEGDEALVKYFYGAKA----NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEAL  123 (315)
Q Consensus        48 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~  123 (315)
                      ..|..|.||||+|+..|+.+++++|++.+.    +++..+.                      .|.||||+|+..|+.++
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~----------------------~g~t~L~~A~~~~~~~~   60 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN----------------------LQQTPLHLAVITNQPEI   60 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT----------------------TCCCHHHHHHHTTCHHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCC----------------------CCCCHHHHHHHcCCHHH
Confidence            457788899999999999888888887765    4555554                      68889999998889999


Q ss_pred             HHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcCCCCCC
Q psy12892        124 VKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENY  203 (315)
Q Consensus       124 v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~  203 (315)
                      +++|++.|++++..+..|.||||+|+..|+.+++++|++. +.+.....                     .++..+..|.
T Consensus        61 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~---------------------~~~~~~~~g~  118 (236)
T 1ikn_D           61 AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS-CTTPHLHS---------------------ILKATNYNGH  118 (236)
T ss_dssp             HHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHS-TTTTSSSC---------------------GGGCCCTTCC
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhHHH---------------------HhhccCCCCC
Confidence            9998888888888888888999999998888898888885 54432111                     1234466788


Q ss_pred             cHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhh-hcCCcceeeeccCCCCcHHHHHH
Q psy12892        204 NVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLIS-KQQTAVHLVCSRQTGTATSILRA  282 (315)
Q Consensus       204 ~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~L~~A~~~~~~~~~~~i~~  282 (315)
                      ||||+|+..++.+++++|++ .|++++..                         +. .|.||||+|+..   ++.+++++
T Consensus       119 t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------------------~~~~g~tpL~~A~~~---~~~~~v~~  169 (236)
T 1ikn_D          119 TCLHLASIHGYLGIVELLVS-LGADVNAQ-------------------------EPCNGRTALHLAVDL---QNPDLVSL  169 (236)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH-HTCCTTCC-------------------------CTTTCCCHHHHHHHT---TCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------------------CCCCCCCHHHHHHHc---CCHHHHHH
Confidence            99999999999999999999 99999985                         44 799999999999   99999999


Q ss_pred             HHhhccceeeeccCCceeEEEeecCchhhhhcC
Q psy12892        283 LLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       283 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                      |+++|++++.+|..|.|||++|+++|+.+++++
T Consensus       170 Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~  202 (236)
T 1ikn_D          170 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQ  202 (236)
T ss_dssp             HHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHH
T ss_pred             HHHcCCCCCcccCCCCCHHHHHHccCchHHHHH
Confidence            999999999999999999999999999999863

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.2e-34  Score=220.27  Aligned_cols=167  Identities=19%  Similarity=0.218  Sum_probs=158.8

Q ss_pred             chhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchh
Q psy12892          9 TAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQ   88 (315)
Q Consensus         9 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~   88 (315)
                      .+..+|.+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+.    
T Consensus        24 ~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----   99 (192)
T 2rfm_A           24 LDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF----   99 (192)
T ss_dssp             HHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT----
T ss_pred             hHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----
Confidence            3345788999999999999999999999999999999999999999999999999999999999999999988776    


Q ss_pred             hHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccc
Q psy12892         89 RDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASI  168 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~  168 (315)
                                        .|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. |+++
T Consensus       100 ------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~  160 (192)
T 2rfm_A          100 ------------------SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADI  160 (192)
T ss_dssp             ------------------TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCT
T ss_pred             ------------------CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCC
Confidence                              789999999999999999999999999999999999999999999999999999996 9999


Q ss_pred             cccccCCccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        169 FERTKENYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       169 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      +..+..|.||+++|+..++.+++++|++.+
T Consensus       161 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          161 SARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            999999999999999999999999998754

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-35  Score=244.17  Aligned_cols=196  Identities=15%  Similarity=0.149  Sum_probs=162.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCcccc-cCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHH
Q psy12892         22 TALHLAARKRDLDMVRILVDYGTSVDI-QNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLA  100 (315)
Q Consensus        22 t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
                      +.+|.|+..+..+++++|++.|++++. .|..|.||||+|+..|+.+++++|+++|++++..+.                
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~----------------  162 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN----------------  162 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT----------------
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------------
Confidence            345888888889999999999999999 899999999999999999999999999999998876                


Q ss_pred             hhhhccCCChHHHHHHhcCC---HHHHHHHHhCC-CCcccCCCCCCcHHHHHHH----cCCHHHHHHHHHhc--------
Q psy12892        101 NCLLMGEGQTALHIASAEGD---EALVKYFYGAK-ANASITDHQDRTPMHLAAE----NGHASIIELLADKF--------  164 (315)
Q Consensus       101 ~~~~~~~~~~~l~~A~~~~~---~~~v~~Ll~~~-~~~~~~~~~~~~~l~~a~~----~~~~~~~~~Ll~~~--------  164 (315)
                            .|.||||+|+..|+   .++++.|++.+ .+++..+..|.||||+|+.    .|+.+++++|++..        
T Consensus       163 ------~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~  236 (327)
T 1sw6_A          163 ------MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ  236 (327)
T ss_dssp             ------TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG
T ss_pred             ------CCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc
Confidence                  79999999999998   67777777765 6788999999999999999    89999999999853        


Q ss_pred             -----------CccccccccCCccHHHHHHHcCcHHHHHHHHhcC----CCCCCcHHHHHHHcCCHHHHHHHHhccCCcc
Q psy12892        165 -----------RASIFERTKENYNVLHLAAMYSREDVVKLLLNKK----GIENYNVLHLAAMYSREDVVKLLLNKKGINV  229 (315)
Q Consensus       165 -----------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~----~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~  229 (315)
                                 +++++..+..|.|||+.|+.      +++|++..    +..|.||||+|+..++.+++++|++ .|+++
T Consensus       237 ~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~Gad~  309 (327)
T 1sw6_A          237 NRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD-YGADP  309 (327)
T ss_dssp             GCCEEEC----------------CHHHHHCS------HHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCT
T ss_pred             chHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCC
Confidence                       78889999999999999986      77776554    7789999999999999999999999 99999


Q ss_pred             ccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeecc
Q psy12892        230 AALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSR  271 (315)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~  271 (315)
                      +.+                         +..|+||||+|++.
T Consensus       310 ~~~-------------------------d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          310 FIA-------------------------NKSGLRPVDFGAGL  326 (327)
T ss_dssp             TCC-------------------------CTTSCCGGGGTCC-
T ss_pred             ccc-------------------------CCCCCCHHHHHHhc
Confidence            985                         78899999999986

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3e-33  Score=208.13  Aligned_cols=153  Identities=33%  Similarity=0.465  Sum_probs=142.1

Q ss_pred             hHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCc
Q psy12892         55 TALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA  134 (315)
Q Consensus        55 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~  134 (315)
                      ++|+.|+..|+.++|++|+++|++++..+.                      .|.|||++|+..++.+++++|++.|+++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~----------------------~g~t~l~~a~~~~~~~~~~~ll~~gad~   63 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDS----------------------DGRTPLHHAAENGHKEVVKLLISKGADV   63 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------------------TSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----------------------CCCCHHHHHHHcCCHHHHHHHHhcccch
Confidence            579999999999999999999999998887                      7999999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHH
Q psy12892        135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHL  208 (315)
Q Consensus       135 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~  208 (315)
                      +..+..|.||||+|+..|+.+++++|++. |++++..+..|+||||+|+..|+.+++++|++.+      +..|.|||++
T Consensus        64 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~  142 (169)
T 4gpm_A           64 NAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL  142 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             hhhccCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            99999999999999999999999999996 9999999999999999999999999999999987      6789999999


Q ss_pred             HHHcCCHHHHHHHHhccCCcccc
Q psy12892        209 AAMYSREDVVKLLLNKKGINVAA  231 (315)
Q Consensus       209 A~~~~~~~~~~~Ll~~~~~~~~~  231 (315)
                      |+..++.+++++|++ +|++++.
T Consensus       143 A~~~g~~~iv~~Ll~-~GA~ie~  164 (169)
T 4gpm_A          143 AREHGNEEVVKLLEK-QGGWLEH  164 (169)
T ss_dssp             HHHTTCHHHHHHHHT-C------
T ss_pred             HHHcCCHHHHHHHHH-CCCCcCC
Confidence            999999999999999 9999875

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=3.4e-34  Score=229.80  Aligned_cols=203  Identities=19%  Similarity=0.194  Sum_probs=168.9

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHH----HHHcCCcccccC----CCCChHHHHHH---hcCCHHHHHHHHhccCCCcccccc
Q psy12892         17 TINGDTALHLAARKRDLDMVRI----LVDYGTSVDIQN----GEGQTALHIAS---AEGDEALVKYFYGAKANASITDHQ   85 (315)
Q Consensus        17 ~~~g~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~----~~g~t~l~~A~---~~~~~~~v~~Ll~~~~~~~~~~~~   85 (315)
                      +..|+|+||.||+.|+.+.++.    |++.|++++..+    ..|.||||+|+   ..|+.+++++|++.|++.......
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            4578999999999999995554    445899988665    77999999999   779999999999988653221100


Q ss_pred             chhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCC--------------CCCCcHHHHHHHc
Q psy12892         86 GIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD--------------HQDRTPMHLAAEN  151 (315)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--------------~~~~~~l~~a~~~  151 (315)
                           ..      ......+..|.||||+|+..|+.+++++|++.|++++..+              ..|.||||+|+..
T Consensus        82 -----~~------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  150 (260)
T 3jxi_A           82 -----IN------SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACT  150 (260)
T ss_dssp             -----HT------CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHT
T ss_pred             -----hc------ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHc
Confidence                 00      0000001168999999999999999999999999999988              6899999999999


Q ss_pred             CCHHHHHHHHHh--cCccccccccCCccHHHHHHHcCc---------HHHHHHHHhc-------------CCCCCCcHHH
Q psy12892        152 GHASIIELLADK--FRASIFERTKENYNVLHLAAMYSR---------EDVVKLLLNK-------------KGIENYNVLH  207 (315)
Q Consensus       152 ~~~~~~~~Ll~~--~~~~~~~~~~~~~~~l~~a~~~~~---------~~~~~~Ll~~-------------~~~~~~~~l~  207 (315)
                      |+.+++++|++.  .|++++..+..|+||||+|+..++         .+++++|++.             .+..|.||||
T Consensus       151 g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~  230 (260)
T 3jxi_A          151 NQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM  230 (260)
T ss_dssp             TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             CCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHH
Confidence            999999999993  399999999999999999998877         7899999876             4678999999


Q ss_pred             HHHHcCCHHHHHHHHhccCCcccc
Q psy12892        208 LAAMYSREDVVKLLLNKKGINVAA  231 (315)
Q Consensus       208 ~A~~~~~~~~~~~Ll~~~~~~~~~  231 (315)
                      +|+..|+.+++++|++ +|.+...
T Consensus       231 ~A~~~g~~~~v~~Ll~-~g~~~~~  253 (260)
T 3jxi_A          231 MAAKTGKIGIFQHIIR-REIADAA  253 (260)
T ss_dssp             HHHHTTCHHHHHHHHH-HHHHHHC
T ss_pred             HHHHcCCHHHHHHHHH-hCCCccc
Confidence            9999999999999999 7776654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.2e-35  Score=229.24  Aligned_cols=194  Identities=11%  Similarity=0.058  Sum_probs=167.3

Q ss_pred             HHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHH
Q psy12892         69 VKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLA  148 (315)
Q Consensus        69 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a  148 (315)
                      ++.|+++|++++..+....                   .+.||||.|+..|+.+++++|++.|++++..+..|.||||+|
T Consensus         1 v~~ll~~~~~~~~~~~~~~-------------------~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A   61 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARL-------------------NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA   61 (229)
T ss_dssp             ---------CCCCCCCTTS-------------------CHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHH
T ss_pred             CeehhccCCCCcccccccc-------------------chhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence            4678888888776655332                   677899999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC-------CCCCCcHHHHH--HHcCCHHHHH
Q psy12892        149 AENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK-------GIENYNVLHLA--AMYSREDVVK  219 (315)
Q Consensus       149 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-------~~~~~~~l~~A--~~~~~~~~~~  219 (315)
                      +..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|++.+       +..|.||||+|  +..++.++++
T Consensus        62 ~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~  140 (229)
T 2vge_A           62 ICGANYSIVDFLITA-GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT  140 (229)
T ss_dssp             HHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHH
T ss_pred             HHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHH
Confidence            999999999999996 9999999999999999999999999999999887       25899999999  9999999999


Q ss_pred             HHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccc--eeeeccCC
Q psy12892        220 LLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGR--EIRMTVDG  297 (315)
Q Consensus       220 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~--~~~~~~~g  297 (315)
                      +|++ .|++++..                         +..+.||++.++..   .   ..++|++.|++  ++.+|..|
T Consensus       141 ~Ll~-~ga~~~~~-------------------------~~~~~~~l~~~~~~---~---~~~~ll~~ga~~~~~~~d~~G  188 (229)
T 2vge_A          141 YLAD-VEQSMGLM-------------------------NSGAVYALWDYSAE---F---GDELSFREGESVTVLRRDGPE  188 (229)
T ss_dssp             HHHH-HHHHTTTS-------------------------GGGEEEESSCBCCS---S---TTBCCBCTTCEEEEEESSCTT
T ss_pred             HHHH-cCCCcccc-------------------------cCCchHHHHHHhhc---c---ccccCccccccccccccCCCc
Confidence            9999 99999985                         67888999977766   3   33688999999  67889999


Q ss_pred             ceeEEEeecCchhhhhc
Q psy12892        298 TLILYYRGKDSKAQIEE  314 (315)
Q Consensus       298 ~t~l~~A~~~~~~~~~~  314 (315)
                      .|||++|++.|+.++|+
T Consensus       189 ~TpL~~A~~~g~~~~v~  205 (229)
T 2vge_A          189 ETDWWWAALHGQEGYVP  205 (229)
T ss_dssp             CSSEEEEEETTEEEEEE
T ss_pred             ccHHHHHHHcCCcceee
Confidence            99999999999999886

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=1.1e-32  Score=206.43  Aligned_cols=161  Identities=28%  Similarity=0.385  Sum_probs=150.2

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhh
Q psy12892         15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAA   94 (315)
Q Consensus        15 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   94 (315)
                      .....+.++|+.||+.|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+.          
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------   78 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH----------   78 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC----------
Confidence            3456778999999999999999999999999999999999999999999999999999999999988776          


Q ss_pred             hhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccC
Q psy12892         95 GTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE  174 (315)
Q Consensus        95 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  174 (315)
                                  .|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++ |++++..+..
T Consensus        79 ------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~  145 (169)
T 2y1l_E           79 ------------AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKF  145 (169)
T ss_dssp             ------------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred             ------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCC
Confidence                        789999999999999999999999999999999999999999999999999999996 9999999999


Q ss_pred             CccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        175 NYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       175 ~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      |.||+++|+..++.+++++|++.|
T Consensus       146 g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          146 GKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999999999998764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1e-32  Score=206.24  Aligned_cols=157  Identities=20%  Similarity=0.308  Sum_probs=150.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhh
Q psy12892         19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSV   98 (315)
Q Consensus        19 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   98 (315)
                      .|.||||.|+..|+.+++++|++.|.+++..|..|.||||+|+..|+.+++++|+++|++++..+.              
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------------   67 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK--------------   67 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--------------
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC--------------
Confidence            589999999999999999999999999999999999999999999999999999999999988776              


Q ss_pred             HHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccH
Q psy12892         99 LANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNV  178 (315)
Q Consensus        99 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  178 (315)
                              .|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||
T Consensus        68 --------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~  138 (167)
T 3v31_A           68 --------GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNS  138 (167)
T ss_dssp             --------TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCH
T ss_pred             --------CCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCH
Confidence                    789999999999999999999999999999999999999999999999999999996 99999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcC
Q psy12892        179 LHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       179 l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      +++|+..|+.+++++|++++
T Consensus       139 l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A          139 MDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             HHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHH
Confidence            99999999999999998754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.9e-33  Score=223.86  Aligned_cols=186  Identities=18%  Similarity=0.174  Sum_probs=155.7

Q ss_pred             hhHhhhhchhhccc----cccCCCcHHHHHHHc---CCHHHHHHHHHcCCccccc-----------CCCCChHHHHHHhc
Q psy12892          2 WELLSTQTAEQLKA----TTINGDTALHLAARK---RDLDMVRILVDYGTSVDIQ-----------NGEGQTALHIASAE   63 (315)
Q Consensus         2 ~~~l~~~~~~~~~~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~-----------~~~g~t~l~~A~~~   63 (315)
                      ++++++.+. +++.    +|..|.||||+|+..   |+.+++++|++.|++++..           |..|.||||+|+..
T Consensus        22 l~~l~~~g~-~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~  100 (256)
T 2etb_A           22 LEYLRWNSK-YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK  100 (256)
T ss_dssp             HHHHHHHTC-CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHT
T ss_pred             HHHHHHcCC-CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHc
Confidence            345555554 5887    899999999999999   9999999999999887633           36799999999999


Q ss_pred             CCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHh---CCCCcccCCCC
Q psy12892         64 GDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG---AKANASITDHQ  140 (315)
Q Consensus        64 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~  140 (315)
                      |+.+++++|+++|++++..+.......         .....+..|.||||+|+..|+.+++++|++   .|++++..+..
T Consensus       101 g~~~~v~~Ll~~ga~~~~~~~~~~~~~---------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~  171 (256)
T 2etb_A          101 RSLQCVKLLVENGADVHLRACGRFFQK---------HQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSL  171 (256)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCSGGGSC---------CSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT
T ss_pred             CCHHHHHHHHHcCCCCCcccccccccc---------cccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCC
Confidence            999999999999999988775311000         000000139999999999999999999999   99999999999


Q ss_pred             CCcHHHHHHH--cCCHH-------HHHHHHHhcCccc-------cccccCCccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        141 DRTPMHLAAE--NGHAS-------IIELLADKFRASI-------FERTKENYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       141 ~~~~l~~a~~--~~~~~-------~~~~Ll~~~~~~~-------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      |.||||+|+.  .++.+       ++++|+++ |+++       +..+..|.||||+|+..|+.+++++|++++
T Consensus       172 g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          172 GNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence            9999999999  78888       99999997 9998       788888888888888888888888888765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=2.5e-32  Score=203.07  Aligned_cols=156  Identities=28%  Similarity=0.435  Sum_probs=145.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhh
Q psy12892         19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSV   98 (315)
Q Consensus        19 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   98 (315)
                      ...||||.|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|+++|++++..+.              
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~--------------   68 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDR--------------   68 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT--------------
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC--------------
Confidence            56799999999999999999999999999999999999999999 999999999999999988776              


Q ss_pred             HHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcc-ccccccCCcc
Q psy12892         99 LANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS-IFERTKENYN  177 (315)
Q Consensus        99 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~~~~~~  177 (315)
                              .|.||||+|+..++.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++ +.+ ++..+..|.|
T Consensus        69 --------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~t  139 (162)
T 1ihb_A           69 --------TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH-TASNVGHRNHKGDT  139 (162)
T ss_dssp             --------TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCCCTTCCCTTSCC
T ss_pred             --------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-cCCCCCCcCCCCCc
Confidence                    789999999999999999999999999999999999999999999999999999997 666 6888888899


Q ss_pred             HHHHHHHcCcHHHHHHHHhcC
Q psy12892        178 VLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       178 ~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      ||++|+..++.+++++|+++|
T Consensus       140 ~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A          140 ACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHhC
Confidence            999999998888888888875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=4.2e-32  Score=203.88  Aligned_cols=156  Identities=24%  Similarity=0.335  Sum_probs=147.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCc-ccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhh
Q psy12892         20 GDTALHLAARKRDLDMVRILVDYGTS-VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSV   98 (315)
Q Consensus        20 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   98 (315)
                      +.||||.|+..|+++++++|++.|.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+.              
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------------   67 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK--------------   67 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT--------------
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcc--------------
Confidence            57899999999999999999999987 888899999999999999999999999999999988776              


Q ss_pred             HHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccH
Q psy12892         99 LANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNV  178 (315)
Q Consensus        99 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  178 (315)
                              .|.||||+|+..++.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||
T Consensus        68 --------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~  138 (172)
T 3v30_A           68 --------ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTP  138 (172)
T ss_dssp             --------TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCH
T ss_pred             --------cCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCH
Confidence                    789999999999999999999999999999999999999999999999999999996 99999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcC
Q psy12892        179 LHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       179 l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      |++|+..++.+++++|++++
T Consensus       139 l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A          139 MDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             HHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHHH
Confidence            99999999999999999865

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=2.8e-32  Score=220.07  Aligned_cols=181  Identities=16%  Similarity=0.246  Sum_probs=102.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCc--ccccCCCCChHHHHHHhcCCHHHHHHHHhccC-CCccccccchhhHHHhhhh
Q psy12892         20 GDTALHLAARKRDLDMVRILVDYGTS--VDIQNGEGQTALHIASAEGDEALVKYFYGAKA-NASITDHQGIQRDIAAAGT   96 (315)
Q Consensus        20 g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~~~~   96 (315)
                      +.+++|.|+..|+++.++.+++.+.+  ++..|..|.||||+|+..|+.+++++|++.|+ +++..+.            
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~------------  143 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNR------------  143 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT------------
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC------------
Confidence            34555555555555555555555444  45555555555555555555555555555555 5554444            


Q ss_pred             hhHHhhhhccCCChHHHHHH-----hcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccc
Q psy12892         97 SVLANCLLMGEGQTALHIAS-----AEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFER  171 (315)
Q Consensus        97 ~~~~~~~~~~~~~~~l~~A~-----~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  171 (315)
                                .|.||||+|+     ..++.+++++|++.|..++..+..|.||||+|+..|+.+++++|++. |++++..
T Consensus       144 ----------~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~n~~  212 (276)
T 4hbd_A          144 ----------AGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC-EADVNVQ  212 (276)
T ss_dssp             ----------TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred             ----------CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC
Confidence                      4555555555     33455555555555555555555555555555555555555555554 5555555


Q ss_pred             ccCCccHHHHHHHcCcHHHHHHHHh-cC------CCCCCcHHHHHHHcCCHHHHHHHHh
Q psy12892        172 TKENYNVLHLAAMYSREDVVKLLLN-KK------GIENYNVLHLAAMYSREDVVKLLLN  223 (315)
Q Consensus       172 ~~~~~~~l~~a~~~~~~~~~~~Ll~-~~------~~~~~~~l~~A~~~~~~~~~~~Ll~  223 (315)
                      +..|.||||+|+..|+.+++++|++ .+      +..|.||||+|+..|+.+++++|++
T Consensus       213 d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  271 (276)
T 4hbd_A          213 DDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS  271 (276)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            5555555555555555555555555 23      4445556666666666666666655

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=4.7e-33  Score=223.15  Aligned_cols=202  Identities=16%  Similarity=0.169  Sum_probs=168.1

Q ss_pred             CCCCChHHHHHHhcCCHHH----HHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHH---hcCCHH
Q psy12892         50 NGEGQTALHIASAEGDEAL----VKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIAS---AEGDEA  122 (315)
Q Consensus        50 ~~~g~t~l~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~---~~~~~~  122 (315)
                      +..+.++||.|+..|+.+.    +++|++.+++++..+..                  .+..|.||||+|+   ..|+.+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~------------------~~~~g~t~L~~A~~~~~~g~~~   63 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFR------------------EPSTGKTCLPKALLNLSAGRND   63 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGS------------------CTTTCCCHHHHHHTSCBTTBCT
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhh------------------ccCCCCcHHHHHHHHhhcCCHH
Confidence            4568899999999999995    55555589988866521                  0016999999999   679999


Q ss_pred             HHHHHHhCCCC-----------cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccc--------------cCCcc
Q psy12892        123 LVKYFYGAKAN-----------ASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERT--------------KENYN  177 (315)
Q Consensus       123 ~v~~Ll~~~~~-----------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~~~~  177 (315)
                      ++++|++.|.+           .+..+..|.||||+|+..|+.+++++|++. |++++..+              ..|.|
T Consensus        64 ~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~t  142 (260)
T 3jxi_A           64 TIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGEL  142 (260)
T ss_dssp             HHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSCCSCSS
T ss_pred             HHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccccCCCC
Confidence            99999987643           344455899999999999999999999996 99999988              58999


Q ss_pred             HHHHHHHcCcHHHHHHHHh---cC------CCCCCcHHHHHHHcCC---------HHHHHHHHhccCCccccCCCCCCCC
Q psy12892        178 VLHLAAMYSREDVVKLLLN---KK------GIENYNVLHLAAMYSR---------EDVVKLLLNKKGINVAALGGEDLTG  239 (315)
Q Consensus       178 ~l~~a~~~~~~~~~~~Ll~---~~------~~~~~~~l~~A~~~~~---------~~~~~~Ll~~~~~~~~~~~~~~~~~  239 (315)
                      |||+|+..|+.+++++|++   .+      +..|.||||+|+..++         .+++++|++ .|++++.......  
T Consensus       143 pL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~--  219 (260)
T 3jxi_A          143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEA--  219 (260)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGG--
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhh--
Confidence            9999999999999999999   65      6789999999998887         799999999 9999842100000  


Q ss_pred             CCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceee
Q psy12892        240 RPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIR  292 (315)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~  292 (315)
                                      ..+..|+||||+|+..   |+.+++++|+++|+++..
T Consensus       220 ----------------~~d~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          220 ----------------LLNNDGLSPLMMAAKT---GKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             ----------------CCCTTSCCHHHHHHHT---TCHHHHHHHHHHHHHHHC
T ss_pred             ----------------cccCCCCCHHHHHHHc---CCHHHHHHHHHhCCCccc
Confidence                            0378899999999999   999999999999987754

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=7.7e-33  Score=223.39  Aligned_cols=166  Identities=24%  Similarity=0.361  Sum_probs=157.8

Q ss_pred             hccccccCCCcHHHHHHHcCCHHHHHHHHHcCC-cccccCCCCChHHHHHH-----hcCCHHHHHHHHhccCCCcccccc
Q psy12892         12 QLKATTINGDTALHLAARKRDLDMVRILVDYGT-SVDIQNGEGQTALHIAS-----AEGDEALVKYFYGAKANASITDHQ   85 (315)
Q Consensus        12 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~-----~~~~~~~v~~Ll~~~~~~~~~~~~   85 (315)
                      .+|.+|.+|.||||+||..|+.+++++|++.|+ +++..+..|.||||+|+     ..++.+++++|++.|...+..+. 
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~-  181 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQ-  181 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTT-
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCC-
Confidence            489999999999999999999999999999998 99999999999999999     67899999999999988877665 


Q ss_pred             chhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q psy12892         86 GIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFR  165 (315)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  165 (315)
                                           .|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++..|
T Consensus       182 ---------------------~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  240 (276)
T 4hbd_A          182 ---------------------AGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS  240 (276)
T ss_dssp             ---------------------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTT
T ss_pred             ---------------------CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC
Confidence                                 79999999999999999999999999999999999999999999999999999999559


Q ss_pred             ccccccccCCccHHHHHHHcCcHHHHHHHHhcCC
Q psy12892        166 ASIFERTKENYNVLHLAAMYSREDVVKLLLNKKG  199 (315)
Q Consensus       166 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  199 (315)
                      ++++..+..|.|||++|+..|+.+++++|+++.+
T Consensus       241 ad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          241 CDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            9999999999999999999999999999998753

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-31  Score=197.19  Aligned_cols=151  Identities=25%  Similarity=0.342  Sum_probs=143.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhH
Q psy12892         20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVL   99 (315)
Q Consensus        20 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (315)
                      +.|+|+.|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|+++|++++..+.               
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------   65 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK---------------   65 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT---------------
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---------------
Confidence            4689999999999999999999999886 588899999999999999999999999999988776               


Q ss_pred             HhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHH
Q psy12892        100 ANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVL  179 (315)
Q Consensus       100 ~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l  179 (315)
                             .|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++ |++++..+..|.||+
T Consensus        66 -------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l  137 (153)
T 1awc_B           66 -------VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAF  137 (153)
T ss_dssp             -------TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             -------CCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHH
Confidence                   789999999999999999999999999999999999999999999999999999996 999999999999999


Q ss_pred             HHHHHcCcHHHHHHH
Q psy12892        180 HLAAMYSREDVVKLL  194 (315)
Q Consensus       180 ~~a~~~~~~~~~~~L  194 (315)
                      ++|+..|+.+++++|
T Consensus       138 ~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          138 DISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            999999999999886

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.98  E-value=1.5e-34  Score=241.25  Aligned_cols=260  Identities=14%  Similarity=0.127  Sum_probs=180.1

Q ss_pred             CCcHHHHHHH-cCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhh
Q psy12892         20 GDTALHLAAR-KRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSV   98 (315)
Q Consensus        20 g~t~L~~A~~-~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   98 (315)
                      +.+++++|.. .++.++++++++.|.+.       .||||+|+..|+.+++++|+++|+.....+..             
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~-------------  124 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVI-------------  124 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC---------------
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHh-------------
Confidence            4557777776 57889999999888765       39999999999999999999998732211100             


Q ss_pred             HHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCc---ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccc--ccc
Q psy12892         99 LANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA---SITDHQDRTPMHLAAENGHASIIELLADKFRASIFE--RTK  173 (315)
Q Consensus        99 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~  173 (315)
                            +..|.||||+|+..|+.+++++|++.|+++   +..+.. .||||+|+..|+.+++++|+++ |++++.  .+.
T Consensus       125 ------~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~-ga~~~~~~~d~  196 (376)
T 2aja_A          125 ------QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL-APTEATAMIQA  196 (376)
T ss_dssp             ------CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHH
T ss_pred             ------ccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc-CCccchhccCC
Confidence                  004568999999999999999999999752   222223 8999999999999999999996 888877  788


Q ss_pred             CCccHHHHHH-HcCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCcccc---chh-
Q psy12892        174 ENYNVLHLAA-MYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTV---GPV-  248 (315)
Q Consensus       174 ~~~~~l~~a~-~~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~---~~~-  248 (315)
                      .|.||||+|+ ..|+.+++++|++.+. .+.|||+.|+..|+.+++++|++ .|.+++..+............   .+. 
T Consensus       197 ~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-~~~taL~~Aa~~g~~evv~lL~~-~ga~~~~~~~~l~~A~~~g~~~vv~~~~  274 (376)
T 2aja_A          197 ENYYAFRWAAVGRGHHNVINFLLDCPV-MLAYAEIHEFEYGEKYVNPFIAR-HVNRLKEMHDAFKLSNPDGVFDLVTKSE  274 (376)
T ss_dssp             HHHHHHHHHHSTTCCHHHHHHHTTSHH-HHHHHHHCTTTTTTTTHHHHHHH-HHHHHHHHHTTTTTTSSSSCCCCSSHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHhCCC-ccchHHHHHHHCCCHHHHHHHHh-cCcccccccHHHHHHHHCCChhhhcHHh
Confidence            8999999999 9999999999998653 47899999999999999999998 888876554332221111100   000 


Q ss_pred             -------h---------------hhhHHH----------HHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccC
Q psy12892        249 -------Q---------------AYLYQV----------YLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVD  296 (315)
Q Consensus       249 -------~---------------~~~~~~----------~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~  296 (315)
                             .               .++...          .....+.||||+|++.   |+.+++++|++.|   .+.+..
T Consensus       275 ~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~---g~~e~v~lLl~~~---~v~~~~  348 (376)
T 2aja_A          275 CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL---GNQGACALLLSIP---SVLALT  348 (376)
T ss_dssp             HHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHH---TCTTHHHHHTTSH---HHHHSC
T ss_pred             hhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHc---CcHHHHHHHHcCh---HHHHHH
Confidence                   0               011100          1123456789999999   9999999999976   777888


Q ss_pred             CceeEEEeecCchhhhhcC
Q psy12892        297 GTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       297 g~t~l~~A~~~~~~~~~~l  315 (315)
                      ++|++++|.+.|..++.++
T Consensus       349 ~~~~~~~~~~~~~~~~~~~  367 (376)
T 2aja_A          349 KANNYYINETGGRLDLRAV  367 (376)
T ss_dssp             C------------------
T ss_pred             HHhccccccccccccHHHH
Confidence            9999999999999998764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=8.8e-31  Score=193.42  Aligned_cols=153  Identities=25%  Similarity=0.359  Sum_probs=144.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-CCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhh
Q psy12892         20 GDTALHLAARKRDLDMVRILVDY-GTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSV   98 (315)
Q Consensus        20 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   98 (315)
                      |.||||.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++..+.              
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~--------------   66 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDT--------------   66 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT--------------
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC--------------
Confidence            56899999999999999999998 45899999999999999 999999999999999999988876              


Q ss_pred             HHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccH
Q psy12892         99 LANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNV  178 (315)
Q Consensus        99 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  178 (315)
                              .|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.  .+++..+..|.||
T Consensus        67 --------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~  136 (156)
T 1bd8_A           67 --------SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTP  136 (156)
T ss_dssp             --------TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCH
T ss_pred             --------CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCH
Confidence                    799999999999999999999999999999999999999999999999999999985  8899999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhc
Q psy12892        179 LHLAAMYSREDVVKLLLNK  197 (315)
Q Consensus       179 l~~a~~~~~~~~~~~Ll~~  197 (315)
                      |++|+..++.+++++|+++
T Consensus       137 l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          137 LELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999874

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=2e-31  Score=198.74  Aligned_cols=159  Identities=24%  Similarity=0.307  Sum_probs=147.0

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHc-CCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhh
Q psy12892         16 TTINGDTALHLAARKRDLDMVRILVDY-GTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAA   94 (315)
Q Consensus        16 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   94 (315)
                      .|..|.||||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+.          
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------   73 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK----------   73 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCC----------
Confidence            467889999999999999999999984 667778888999999999999999999999999999988876          


Q ss_pred             hhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccC
Q psy12892         95 GTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE  174 (315)
Q Consensus        95 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  174 (315)
                                  .|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. |++++..+..
T Consensus        74 ------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~  140 (165)
T 3twr_A           74 ------------GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRD  140 (165)
T ss_dssp             ------------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred             ------------CCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCC
Confidence                        789999999999999999999999999999999999999999999999999999996 9999999999


Q ss_pred             CccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        175 NYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       175 ~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      |.||+++|+. ++.+++++|++.+
T Consensus       141 g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A          141 GNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             SCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             CCChhHhHhc-CChHHHHHHhhcc
Confidence            9999999877 8889999998765

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=3.9e-31  Score=213.51  Aligned_cols=175  Identities=22%  Similarity=0.248  Sum_probs=139.5

Q ss_pred             ccccCCCcHHHHHHHc---CCHHHHHHHHHcCCcc-------cc----cCCCCChHHHHHHhcCCHHHHHHHHhccCCCc
Q psy12892         15 ATTINGDTALHLAARK---RDLDMVRILVDYGTSV-------DI----QNGEGQTALHIASAEGDEALVKYFYGAKANAS   80 (315)
Q Consensus        15 ~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~-------~~----~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~   80 (315)
                      .+|..|.||||+|+..   |+.+++++|+++|+++       +.    .|..|.||||+|+..|+.+++++|+++|++++
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~  128 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ  128 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            4588999999999987   9999999999998752       32    56789999999999999999999999999998


Q ss_pred             cccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHh---CCCCcccCCCCCCcHHHHHHHcCC----
Q psy12892         81 ITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG---AKANASITDHQDRTPMHLAAENGH----  153 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~~~~~l~~a~~~~~----  153 (315)
                      ..+........        .....+..|.||||+|+..|+.+++++|++   .|++++..+..|.||||+|+..|+    
T Consensus       129 ~~~~~~~~~~~--------~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~  200 (273)
T 2pnn_A          129 AAANGDFFKKT--------KGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD  200 (273)
T ss_dssp             CCBCSGGGSSC--------SSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred             ccccccccccc--------cccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchh
Confidence            87752110000        000001158999999999999999999999   999999999999999999999988    


Q ss_pred             -----HHHHHHHHHhcCccccc-------cccCCccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        154 -----ASIIELLADKFRASIFE-------RTKENYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       154 -----~~~~~~Ll~~~~~~~~~-------~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                           .+++++|++. |++++.       .+..|.||||+|+..|+.+++++|+++|
T Consensus       201 ~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  256 (273)
T 2pnn_A          201 NTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE  256 (273)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-hhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCC
Confidence                 7999999996 888864       5556666666666666666666665554

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.1e-30  Score=199.73  Aligned_cols=155  Identities=21%  Similarity=0.291  Sum_probs=147.9

Q ss_pred             ccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHH
Q psy12892         46 VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK  125 (315)
Q Consensus        46 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~  125 (315)
                      ++..|..|.||||+|+..|+.+++++|++++++++..+.                      .|.||||+|+..++.++++
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------------------~g~t~L~~A~~~~~~~~v~   85 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI----------------------EGSTALIWAVKNNRLGIAE   85 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT----------------------TSCCHHHHHHHTTCHHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccc----------------------cCccHHHHHHHcCCHHHHH
Confidence            566889999999999999999999999999999888776                      7999999999999999999


Q ss_pred             HHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------C
Q psy12892        126 YFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------G  199 (315)
Q Consensus       126 ~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~  199 (315)
                      +|++.|++++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..++.+++++|++.+      +
T Consensus        86 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  164 (192)
T 2rfm_A           86 KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD  164 (192)
T ss_dssp             HHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            99999999999999999999999999999999999996 9999999999999999999999999999999887      6


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHh
Q psy12892        200 IENYNVLHLAAMYSREDVVKLLLN  223 (315)
Q Consensus       200 ~~~~~~l~~A~~~~~~~~~~~Ll~  223 (315)
                      ..|.||+++|+..++.+++++|++
T Consensus       165 ~~g~t~l~~A~~~~~~~~v~~Ll~  188 (192)
T 2rfm_A          165 LTGLTAEASARIFGRQEVIKIFTE  188 (192)
T ss_dssp             TTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhCcHHHHHHHHh
Confidence            678999999999999999999998

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=4.6e-31  Score=198.15  Aligned_cols=163  Identities=18%  Similarity=0.175  Sum_probs=146.8

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhCCCC-cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcC
Q psy12892        108 GQTALHIASAEGDEALVKYFYGAKAN-ASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS  186 (315)
Q Consensus       108 ~~~~l~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~  186 (315)
                      +.+|||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|++. |++++..+..+.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCC
Confidence            35899999999999999999999887 788899999999999999999999999997 9999999999999999999999


Q ss_pred             cHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhh
Q psy12892        187 REDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISK  260 (315)
Q Consensus       187 ~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (315)
                      +.+++++|++.+      +..|.||||+|+..++.+++++|++ .|++++..                         +..
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~-------------------------~~~  134 (172)
T 3v30_A           81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTE-------------------------ADS  134 (172)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------------------CTT
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-------------------------CCC
Confidence            999999999877      6678999999999999999999999 99999885                         678


Q ss_pred             cCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCcee
Q psy12892        261 QQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLI  300 (315)
Q Consensus       261 ~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~  300 (315)
                      |.||||+|+..   ++.+++++|+++|+++..++..|.||
T Consensus       135 g~t~l~~A~~~---~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          135 GYTPMDLAVAL---GYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             SCCHHHHHHHH---TCHHHHHHHHHHHHHHSCC-------
T ss_pred             CCCHHHHHHHh---CcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            99999999999   99999999999999999999988887

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=9.4e-31  Score=197.73  Aligned_cols=158  Identities=20%  Similarity=0.222  Sum_probs=140.8

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHc-CCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhh
Q psy12892         18 INGDTALHLAARKRDLDMVRILVDY-GTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGT   96 (315)
Q Consensus        18 ~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   96 (315)
                      ..+.++|+.||..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+.            
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~------------   70 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR------------   70 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC------------
Confidence            4678999999999999999999998 677999999999999999999999999999999999988776            


Q ss_pred             hhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCc
Q psy12892         97 SVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENY  176 (315)
Q Consensus        97 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  176 (315)
                                .|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++ |++++..+..|.
T Consensus        71 ----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~  139 (179)
T 3f6q_A           71 ----------GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGE  139 (179)
T ss_dssp             ----------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSC
T ss_pred             ----------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCC
Confidence                      789999999999999999999999999999999999999999999999999999996 999998888888


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcC
Q psy12892        177 NVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       177 ~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      ||+++|+..++.+++++|++.+
T Consensus       140 tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A          140 MPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             CGGGGSCHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHHHHHhh
Confidence            8888887776666666666554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.5e-33  Score=219.68  Aligned_cols=192  Identities=21%  Similarity=0.143  Sum_probs=160.5

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHH
Q psy12892         13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIA   92 (315)
Q Consensus        13 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   92 (315)
                      .+..+.+|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+.        
T Consensus        14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~--------   85 (229)
T 2vge_A           14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDS--------   85 (229)
T ss_dssp             CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--------
T ss_pred             ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC--------
Confidence            456667788889999999999999999999999999999999999999999999999999999999888776        


Q ss_pred             hhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCC-CCCCcHHHHH--HHcCCHHHHHHHHHhcCcccc
Q psy12892         93 AAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD-HQDRTPMHLA--AENGHASIIELLADKFRASIF  169 (315)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a--~~~~~~~~~~~Ll~~~~~~~~  169 (315)
                                    .|.||||+|+..|+.+++++|++.|++++..+ ..|.|||++|  +..|+.+++++|++. |++++
T Consensus        86 --------------~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~-ga~~~  150 (229)
T 2vge_A           86 --------------HGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV-EQSMG  150 (229)
T ss_dssp             --------------TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH-HHHTT
T ss_pred             --------------CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc-CCCcc
Confidence                          78899999999999999999999999999886 6899999999  899999999999996 88888


Q ss_pred             ccccCCccHHHHHHHcCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhh
Q psy12892        170 ERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQ  249 (315)
Q Consensus       170 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (315)
                      ..+..+.++++.++...                              ..++|++ .|.+++...                
T Consensus       151 ~~~~~~~~~l~~~~~~~------------------------------~~~~ll~-~ga~~~~~~----------------  183 (229)
T 2vge_A          151 LMNSGAVYALWDYSAEF------------------------------GDELSFR-EGESVTVLR----------------  183 (229)
T ss_dssp             TSGGGEEEESSCBCCSS------------------------------TTBCCBC-TTCEEEEEE----------------
T ss_pred             cccCCchHHHHHHhhcc------------------------------ccccCcc-ccccccccc----------------
Confidence            88877777765432221                              1146676 788843221                


Q ss_pred             hhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHH
Q psy12892        250 AYLYQVYLISKQQTAVHLVCSRQTGTATSILRALL  284 (315)
Q Consensus       250 ~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll  284 (315)
                             ++..|+||||+|+..   |+.++|+.++
T Consensus       184 -------~d~~G~TpL~~A~~~---g~~~~v~~~~  208 (229)
T 2vge_A          184 -------RDGPEETDWWWAALH---GQEGYVPRNY  208 (229)
T ss_dssp             -------SSCTTCSSEEEEEET---TEEEEEEGGG
T ss_pred             -------cCCCcccHHHHHHHc---CCcceeehhh
Confidence                   367899999999999   9988887643

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=3.9e-30  Score=191.14  Aligned_cols=152  Identities=24%  Similarity=0.312  Sum_probs=141.7

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCC
Q psy12892         52 EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK  131 (315)
Q Consensus        52 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~  131 (315)
                      ...||||.|+..|+.+++++|+++|++++..+.                      .|.||||+|+. |+.+++++|++.|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------------------~g~t~L~~A~~-~~~~~v~~Ll~~g   60 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNG----------------------FGRTALQVMKL-GNPEIARRLLLRG   60 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCT----------------------TSCCHHHHCCS-SCHHHHHHHHHTT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCc----------------------cCccHHHHHHc-CcHHHHHHHHHcC
Confidence            456999999999999999999999999988776                      79999999999 9999999999999


Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC-------CCCCCc
Q psy12892        132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK-------GIENYN  204 (315)
Q Consensus       132 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-------~~~~~~  204 (315)
                      .+++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..++.+++++|++.+       +..|.|
T Consensus        61 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t  139 (162)
T 1ihb_A           61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT  139 (162)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCc
Confidence            99999999999999999999999999999996 9999999999999999999999999999999876       446899


Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCc
Q psy12892        205 VLHLAAMYSREDVVKLLLNKKGIN  228 (315)
Q Consensus       205 ~l~~A~~~~~~~~~~~Ll~~~~~~  228 (315)
                      |||+|+..++.+++++|++ +|+|
T Consensus       140 ~l~~A~~~~~~~~~~~Ll~-~GAd  162 (162)
T 1ihb_A          140 ACDLARLYGRNEVVSLMQA-NGAG  162 (162)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-TC--
T ss_pred             HHHHHHHcCCHHHHHHHHH-hCCC
Confidence            9999999999999999999 8875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=8.2e-30  Score=190.37  Aligned_cols=155  Identities=21%  Similarity=0.266  Sum_probs=145.9

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCC
Q psy12892         52 EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK  131 (315)
Q Consensus        52 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~  131 (315)
                      .|.||||.|+..|+.+++++|++.+++++..+.                      .|.||||+|+..|+.+++++|++.|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~----------------------~g~t~L~~A~~~~~~~~v~~Ll~~g   59 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE----------------------EGFTPLMWAAAHGQIAVVEFLLQNG   59 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCT----------------------TSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCC----------------------CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            578999999999999999999999999888776                      7999999999999999999999999


Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcH
Q psy12892        132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNV  205 (315)
Q Consensus       132 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~  205 (315)
                      ++++..+..|.||||+|+..|+.+++++|++. +++++..+..|.||||+|+..++.+++++|++.+      +..|.||
T Consensus        60 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  138 (167)
T 3v31_A           60 ADPQLLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS  138 (167)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            99999999999999999999999999999997 9999999999999999999999999999999876      6678999


Q ss_pred             HHHHHHcCCHHHHHHHHhccCCccc
Q psy12892        206 LHLAAMYSREDVVKLLLNKKGINVA  230 (315)
Q Consensus       206 l~~A~~~~~~~~~~~Ll~~~~~~~~  230 (315)
                      +++|+..++.+++++|++ ++.+..
T Consensus       139 l~~A~~~~~~~~~~~L~~-~~~~~~  162 (167)
T 3v31_A          139 MDLAVALGYRSVQQVIES-HLLKLL  162 (167)
T ss_dssp             HHHHHHHTCHHHHHHHHH-HHHHHC
T ss_pred             HHHHHHcCcHHHHHHHHH-HHHHHH
Confidence            999999999999999998 665543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1.9e-29  Score=188.74  Aligned_cols=153  Identities=26%  Similarity=0.371  Sum_probs=142.9

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHh
Q psy12892         50 NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG  129 (315)
Q Consensus        50 ~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~  129 (315)
                      ...+.++|+.|+..|+.+++++|+++|++++..+.                      .|.||||+|+..|+.+++++|++
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------------------~g~t~L~~A~~~~~~~~v~~Ll~   68 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDA----------------------SGWTPLHLAAFNGHLEIVEVLLK   68 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------------------TSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------------------CCCCHHHHHHHcCCHHHHHHHHH
Confidence            34567899999999999999999999999988776                      78999999999999999999999


Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCC
Q psy12892        130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENY  203 (315)
Q Consensus       130 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~  203 (315)
                      .|.+++..+..|.||||+|+..|+.+++++|++. +++++..+..|.||||+|+..++.+++++|++.+      +..|.
T Consensus        69 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  147 (169)
T 2y1l_E           69 NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGK  147 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            9999999999999999999999999999999996 9999999999999999999999999999999987      56799


Q ss_pred             cHHHHHHHcCCHHHHHHHHhccC
Q psy12892        204 NVLHLAAMYSREDVVKLLLNKKG  226 (315)
Q Consensus       204 ~~l~~A~~~~~~~~~~~Ll~~~~  226 (315)
                      |||++|+..++.+++++|++ .|
T Consensus       148 t~l~~A~~~~~~~~~~~L~~-~G  169 (169)
T 2y1l_E          148 TAFDISIDNGNEDLAEILQK-LN  169 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHT-C-
T ss_pred             CHHHHHHHhCCHHHHHHHHH-cC
Confidence            99999999999999999998 54

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=5.6e-31  Score=208.18  Aligned_cols=174  Identities=22%  Similarity=0.241  Sum_probs=124.8

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhh
Q psy12892         17 TINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGT   96 (315)
Q Consensus        17 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   96 (315)
                      +..|.||||.|++.|+.+.++.|+++|++++. +..|.||||.|+..|+.+++++|++.|++++..+.            
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~------------   68 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND------------   68 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT------------
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC------------
Confidence            45799999999999999999999999999985 47889999999999999999999999999988876            


Q ss_pred             hhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCc
Q psy12892         97 SVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENY  176 (315)
Q Consensus        97 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  176 (315)
                                .|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++ |++++..+..+.
T Consensus        69 ----------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~  137 (239)
T 1ycs_B           69 ----------EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDM  137 (239)
T ss_dssp             ----------TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSC
T ss_pred             ----------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCC
Confidence                      799999999999999999999999999999999999999999999999999999996 999999998777


Q ss_pred             -cHHHHH--HHcCcHHHHHHHHhcC---------------CCCCCcHHHHHHHcCC
Q psy12892        177 -NVLHLA--AMYSREDVVKLLLNKK---------------GIENYNVLHLAAMYSR  214 (315)
Q Consensus       177 -~~l~~a--~~~~~~~~~~~Ll~~~---------------~~~~~~~l~~A~~~~~  214 (315)
                       ||+++|  +..|+.+++++|++.+               +..+.++++++...|.
T Consensus       138 ~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          138 QTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             CCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             cchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence             999999  7888999999999765               3345566665555544

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=3e-29  Score=189.44  Aligned_cols=161  Identities=20%  Similarity=0.253  Sum_probs=148.7

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhC-CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHc
Q psy12892        107 EGQTALHIASAEGDEALVKYFYGA-KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMY  185 (315)
Q Consensus       107 ~~~~~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~  185 (315)
                      .+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHc
Confidence            567899999999999999999987 667889999999999999999999999999997 999999999999999999999


Q ss_pred             CcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhh
Q psy12892        186 SREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLIS  259 (315)
Q Consensus       186 ~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (315)
                      ++.+++++|++.+      +..|.||||+|+..++.+++++|++ .|++++..                         +.
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~-------------------------~~  136 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSIC-------------------------NK  136 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBC-------------------------CT
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchh-------------------------cc
Confidence            9999999999887      6678999999999999999999999 99999985                         77


Q ss_pred             hcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCC
Q psy12892        260 KQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDG  297 (315)
Q Consensus       260 ~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g  297 (315)
                      .|.|||++|+..   ++.+++++|+++|++++..+..+
T Consensus       137 ~g~tpl~~A~~~---~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          137 YGEMPVDKAKAP---LRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             TSCCGGGGSCHH---HHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             CCCCcHHHHHHH---HHHHHHHHHHHhhcCcccCCccc
Confidence            899999999999   99999999999999999776554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.5e-31  Score=211.51  Aligned_cols=215  Identities=13%  Similarity=0.093  Sum_probs=149.8

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHh
Q psy12892         50 NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG  129 (315)
Q Consensus        50 ~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~  129 (315)
                      +..|.||||.|+..++.++++.|+++|++++...                       .+.||||.|+..|+.+++++|++
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~-----------------------~~~t~L~~A~~~g~~~~v~~Ll~   58 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-----------------------LPLALLLDSSLEGEFDLVQRIIY   58 (239)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHHHTCHHHHHHHTS
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccCc-----------------------hhhHHHHHHHHcCCHHHHHHHHH
Confidence            3568999999999999999999999999987642                       68899999999999999999999


Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCC
Q psy12892        130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENY  203 (315)
Q Consensus       130 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~  203 (315)
                      .|++++..+..|.||||+|+..|+.+++++|++. |++++..+..|+||||+|+..|+.+++++|++++      +..+.
T Consensus        59 ~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~  137 (239)
T 1ycs_B           59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM  137 (239)
T ss_dssp             TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSC
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCC
Confidence            9999999999999999999999999999999997 9999999999999999999999999999999987      33444


Q ss_pred             -cHHHHH--HHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHH
Q psy12892        204 -NVLHLA--AMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSIL  280 (315)
Q Consensus       204 -~~l~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i  280 (315)
                       ||||.|  +..++.+++++|++ .|++++..+......        +        .+..+.++++++...   |.  ++
T Consensus       138 ~t~l~~a~~~~~g~~~~~~~Ll~-~~a~~~~~~~~~~~a--------l--------~d~~~~~~~eLa~~~---G~--~i  195 (239)
T 1ycs_B          138 QTAADKCEEMEEGYTQCSQFLYG-VQEKMGIMNKGVIYA--------L--------WDYEPQNDDELPMKE---GD--CM  195 (239)
T ss_dssp             CCHHHHCCSSSTTCCCHHHHHHH-HHHHTTTTGGGEEEE--------S--------SCBCCSSTTBCCBCS---SC--EE
T ss_pred             cchHHHHHHhhhccHHHHHHHHH-hhhcccccccceEEE--------E--------eccCCCCCCcccccC---CC--EE
Confidence             999999  78899999999999 899888753211100        0        145678999999998   65  56


Q ss_pred             HHHHhhccc------eeeeccCCceeEEEeecCchh
Q psy12892        281 RALLSTAGR------EIRMTVDGTLILYYRGKDSKA  310 (315)
Q Consensus       281 ~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~  310 (315)
                      ++|.+.+.+      ....+..|.+|..|.......
T Consensus       196 ~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~~~  231 (239)
T 1ycs_B          196 TIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI  231 (239)
T ss_dssp             EECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC--
T ss_pred             EEEEecCCCCCCEEEEEECCcEEEeehHHeeECCcC
Confidence            667666655      235566788888887765443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=1.2e-29  Score=182.68  Aligned_cols=133  Identities=22%  Similarity=0.275  Sum_probs=125.3

Q ss_pred             hhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhH
Q psy12892         11 EQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRD   90 (315)
Q Consensus        11 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~   90 (315)
                      .+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|+++|++++..+.      
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~------   75 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADP------   75 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBT------
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCC------
Confidence            4688999999999999999999999999999999999999999999999999 999999999999999988876      


Q ss_pred             HHhhhhhhHHhhhhccC-CChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcc
Q psy12892         91 IAAAGTSVLANCLLMGE-GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS  167 (315)
Q Consensus        91 ~~~~~~~~~~~~~~~~~-~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~  167 (315)
                                      . |.||||+|+..++.+++++|++.|++++..+..|.|||++|+..|+.+++++|+++ |++
T Consensus        76 ----------------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Gad  136 (136)
T 1d9s_A           76 ----------------ATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA-TGD  136 (136)
T ss_dssp             ----------------TTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HCC
T ss_pred             ----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence                            5 89999999999999999999999999999999999999999999999999999986 653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=1.4e-28  Score=180.87  Aligned_cols=145  Identities=25%  Similarity=0.346  Sum_probs=136.3

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCC
Q psy12892         53 GQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA  132 (315)
Q Consensus        53 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~  132 (315)
                      ..++|+.|+..|+.+++++|+++|++++. +.                      .|.||||+|+..|+.+++++|++.|.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~----------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~   58 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFTT-DW----------------------LGTSPLHLAAQYGHFSTTEVLLRAGV   58 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCCC-CT----------------------TCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCCc-CC----------------------CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            35899999999999999999999998763 22                      78999999999999999999999999


Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHH
Q psy12892        133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVL  206 (315)
Q Consensus       133 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l  206 (315)
                      +++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..++.+++++|++.+      +..|.|||
T Consensus        59 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  137 (153)
T 1awc_B           59 SRDARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF  137 (153)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCCCCCCCCCHHHHHHHcChHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            9999999999999999999999999999996 9999999999999999999999999999999887      66789999


Q ss_pred             HHHHHcCCHHHHHHH
Q psy12892        207 HLAAMYSREDVVKLL  221 (315)
Q Consensus       207 ~~A~~~~~~~~~~~L  221 (315)
                      ++|+..++.+++++|
T Consensus       138 ~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          138 DISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            999999999999987

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=1.5e-31  Score=223.28  Aligned_cols=158  Identities=15%  Similarity=0.142  Sum_probs=129.8

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcc---cccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhh
Q psy12892         13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSV---DIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQR   89 (315)
Q Consensus        13 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   89 (315)
                      +..++.++.||||+|++.|+.++|++|+++|+..   +..+..|.||||+|+..|+.+++++|+++|+++...+...   
T Consensus        85 l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~---  161 (376)
T 2aja_A           85 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA---  161 (376)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH---
T ss_pred             HHHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCC---
Confidence            4556677889999999999999999999999832   2334567899999999999999999999998643221110   


Q ss_pred             HHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCccc--CCCCCCcHHHHHH-HcCCHHHHHHHHHhcCc
Q psy12892         90 DIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI--TDHQDRTPMHLAA-ENGHASIIELLADKFRA  166 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~Ll~~~~~  166 (315)
                                       .+.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+ ..|+.+++++|++. |.
T Consensus       162 -----------------~~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~-ga  223 (376)
T 2aja_A          162 -----------------ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PV  223 (376)
T ss_dssp             -----------------HHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HH
T ss_pred             -----------------CCCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC-CC
Confidence                             126999999999999999999999999877  7888999999999 99999999999985 53


Q ss_pred             cccccccCCccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        167 SIFERTKENYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       167 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      .       +.||+++|+..|+.+++++|++.+
T Consensus       224 ~-------~~taL~~Aa~~g~~evv~lL~~~g  248 (376)
T 2aja_A          224 M-------LAYAEIHEFEYGEKYVNPFIARHV  248 (376)
T ss_dssp             H-------HHHHHHCTTTTTTTTHHHHHHHHH
T ss_pred             c-------cchHHHHHHHCCCHHHHHHHHhcC
Confidence            2       689999999999999999998654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=1.8e-29  Score=186.20  Aligned_cols=146  Identities=19%  Similarity=0.217  Sum_probs=119.7

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHH
Q psy12892         13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIA   92 (315)
Q Consensus        13 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   92 (315)
                      .+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++..+.        
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~--------   75 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP--------   75 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT--------
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC--------
Confidence            5667889999999999999999999999999999999999999999985 8999999999999999998876        


Q ss_pred             hhhhhhHHhhhhccCCCh-HHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccc
Q psy12892         93 AAGTSVLANCLLMGEGQT-ALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFER  171 (315)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  171 (315)
                                    .|.| |||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++ |++++..
T Consensus        76 --------------~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~  140 (156)
T 1bi7_B           76 --------------ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGS  140 (156)
T ss_dssp             --------------TTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C------
T ss_pred             --------------CCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCcc
Confidence                          6888 99999999999999999999999999999999999999999999999999996 9999999


Q ss_pred             ccCCccHHHHH
Q psy12892        172 TKENYNVLHLA  182 (315)
Q Consensus       172 ~~~~~~~l~~a  182 (315)
                      +..|.++.+.+
T Consensus       141 ~~~g~t~~~~~  151 (156)
T 1bi7_B          141 NHARIDAAEGP  151 (156)
T ss_dssp             -----------
T ss_pred             CcCcCcccccC
Confidence            99998887644

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=3.7e-28  Score=180.97  Aligned_cols=151  Identities=27%  Similarity=0.348  Sum_probs=137.6

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHh-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHc
Q psy12892        107 EGQTALHIASAEGDEALVKYFYG-AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMY  185 (315)
Q Consensus       107 ~~~~~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~  185 (315)
                      .+.+||+.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHHHHHc
Confidence            57799999999999999999997 5567777888899999999999999999999996 999999999999999999999


Q ss_pred             CcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhh
Q psy12892        186 SREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLIS  259 (315)
Q Consensus       186 ~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (315)
                      ++.+++++|++.+      +..|.||||+|+..++.+++++|++ .|++++.+                         +.
T Consensus        86 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~-------------------------~~  139 (165)
T 3twr_A           86 GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKK-------------------------NR  139 (165)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------------------CT
T ss_pred             CcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCccc-------------------------CC
Confidence            9999999999887      6678999999999999999999999 99999985                         78


Q ss_pred             hcCCcceeeeccCCCCcHHHHHHHHhhcc
Q psy12892        260 KQQTAVHLVCSRQTGTATSILRALLSTAG  288 (315)
Q Consensus       260 ~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~  288 (315)
                      .|.||||+|+.    ++.+++++|+++|+
T Consensus       140 ~g~t~l~~a~~----~~~~i~~~L~~~gA  164 (165)
T 3twr_A          140 DGNTPLDLVKD----GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TSCCTGGGSCT----TCHHHHHHHHTC--
T ss_pred             CCCChhHhHhc----CChHHHHHHhhccc
Confidence            89999999765    47899999999986

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1.2e-27  Score=176.58  Aligned_cols=147  Identities=22%  Similarity=0.280  Sum_probs=136.5

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhc-cCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCC
Q psy12892         53 GQTALHIASAEGDEALVKYFYGA-KANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK  131 (315)
Q Consensus        53 g~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~  131 (315)
                      +.|||+.|+..|+.+++++|++. +.+++..+.                      .|.||||+ +..|+.+++++|++.|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------------------~g~t~L~~-~~~~~~~~v~~Ll~~g   58 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR----------------------FGKTALQV-MMFGSTAIALELLKQG   58 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT----------------------TSCCHHHH-SCTTCHHHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCC----------------------CCCcHHHH-HHcCCHHHHHHHHHCC
Confidence            45899999999999999999988 336666665                      79999999 9999999999999999


Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC-----CCCCCcHH
Q psy12892        132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK-----GIENYNVL  206 (315)
Q Consensus       132 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-----~~~~~~~l  206 (315)
                      ++++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|++..     +..|.|||
T Consensus        59 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~g~t~l  137 (156)
T 1bd8_A           59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPL  137 (156)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhccCCCCcCCCCCCHH
Confidence            99999999999999999999999999999996 9999999999999999999999999999999653     66789999


Q ss_pred             HHHHHcCCHHHHHHHHh
Q psy12892        207 HLAAMYSREDVVKLLLN  223 (315)
Q Consensus       207 ~~A~~~~~~~~~~~Ll~  223 (315)
                      ++|+..++.+++++|++
T Consensus       138 ~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          138 ELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHSCCHHHHHHHHT
T ss_pred             HHHHHcCcHHHHHHHHh
Confidence            99999999999999997

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=3.2e-27  Score=167.71  Aligned_cols=126  Identities=39%  Similarity=0.655  Sum_probs=119.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhh
Q psy12892         19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSV   98 (315)
Q Consensus        19 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   98 (315)
                      +|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+.              
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~--------------   66 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK--------------   66 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--------------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCC--------------
Confidence            589999999999999999999999999999999999999999999999999999999999888776              


Q ss_pred             HHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcc
Q psy12892         99 LANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS  167 (315)
Q Consensus        99 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~  167 (315)
                              .|.||||+|+..++.+++++|++.|.+++..+..|.||+++|+..|+.+++++|+++ |++
T Consensus        67 --------~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-Gad  126 (126)
T 1n0r_A           67 --------NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAY  126 (126)
T ss_dssp             --------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCC
T ss_pred             --------CCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence                    789999999999999999999999999999999999999999999999999999986 653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=2.2e-27  Score=170.80  Aligned_cols=127  Identities=26%  Similarity=0.340  Sum_probs=116.8

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhh
Q psy12892         15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAA   94 (315)
Q Consensus        15 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   94 (315)
                      .....|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+.          
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~----------   78 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA----------   78 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC----------
Confidence            3456789999999999999999999999999999999999999999999999999999999999888776          


Q ss_pred             hhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q psy12892         95 GTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK  163 (315)
Q Consensus        95 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  163 (315)
                                  .|.||||+|+..++.+++++|++.|++++..+..|.|||++|+..|+.+++++|++.
T Consensus        79 ------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           79 ------------IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             ------------TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             ------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence                        789999999999999999999999999999999999999999999999999999874

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=1.7e-27  Score=171.47  Aligned_cols=132  Identities=17%  Similarity=0.228  Sum_probs=124.6

Q ss_pred             CCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHH
Q psy12892         43 GTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA  122 (315)
Q Consensus        43 g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~  122 (315)
                      +++++..+..|.||||+|+..|+.+++++|+++|++++..+.                      .|.||||+|+. ++.+
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------------------~g~t~L~~A~~-~~~~   58 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR----------------------FGRRPIQVMMM-GSAQ   58 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------------------TCCTTTTTSTT-SCHH
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCC----------------------CCCCHHHHHHc-CCHH
Confidence            568888999999999999999999999999999999988776                      79999999999 9999


Q ss_pred             HHHHHHhCCCCcccCCCC-CCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        123 LVKYFYGAKANASITDHQ-DRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       123 ~v~~Ll~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      ++++|++.|++++..+.. |.||||+|+..|+.+++++|++. |++++..+..|.|||++|+..++.+++++|+++|
T Consensus        59 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHT-CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999 99999999999999999999996 9999999999999999999999999999998865

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=3.7e-28  Score=183.66  Aligned_cols=155  Identities=12%  Similarity=0.079  Sum_probs=138.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCcccccC-CCCChHHHHHHhcCCH----HHHHHHHhccCCCccccccchhhHHHh
Q psy12892         19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQN-GEGQTALHIASAEGDE----ALVKYFYGAKANASITDHQGIQRDIAA   93 (315)
Q Consensus        19 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~~~~~~   93 (315)
                      .+.++|+.|++.|+++.++.+++.+.+.  .+ ..|.||||+|+..++.    +++++|+++|++++..+.         
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~---------   73 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK---------   73 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCT---------
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCC---------
Confidence            4578999999999999999999987643  44 6799999999999975    599999999999999886         


Q ss_pred             hhhhhHHhhhhccCCChHHHHHHhcCC------HHHHHHHHhCCCCcccCCCCCC-cHHHHHHHcC-----CHHHHHHHH
Q psy12892         94 AGTSVLANCLLMGEGQTALHIASAEGD------EALVKYFYGAKANASITDHQDR-TPMHLAAENG-----HASIIELLA  161 (315)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~l~~A~~~~~------~~~v~~Ll~~~~~~~~~~~~~~-~~l~~a~~~~-----~~~~~~~Ll  161 (315)
                                   .|.||||+|+..++      .+++++|++.|++++.+|..|. ||||+|+..+     +.+++++|+
T Consensus        74 -------------~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll  140 (186)
T 3t8k_A           74 -------------EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF  140 (186)
T ss_dssp             -------------TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHH
T ss_pred             -------------CCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHH
Confidence                         79999999999886      5789999999999999999999 9999999954     456999999


Q ss_pred             HhcCccccccccCCccHHHHHHHcCcHHHHHHHHhc
Q psy12892        162 DKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK  197 (315)
Q Consensus       162 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  197 (315)
                      +..|++++..+..|.||||+|+..++.+++++|.+.
T Consensus       141 ~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             TSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             HhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            833999999999999999999999999999999864

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=6.4e-27  Score=176.88  Aligned_cols=136  Identities=13%  Similarity=0.107  Sum_probs=121.1

Q ss_pred             hccccc-cCCCcHHHHHHHcCCH----HHHHHHHHcCCcccccCCCCChHHHHHHhcCC------HHHHHHHHhccCCCc
Q psy12892         12 QLKATT-INGDTALHLAARKRDL----DMVRILVDYGTSVDIQNGEGQTALHIASAEGD------EALVKYFYGAKANAS   80 (315)
Q Consensus        12 ~~~~~~-~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~------~~~v~~Ll~~~~~~~   80 (315)
                      .++.++ ..|.||||+|+..|+.    +++++|+++|++++..|..|.||||+|+..++      .+++++|+++|++++
T Consensus        29 ~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin  108 (186)
T 3t8k_A           29 GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT  108 (186)
T ss_dssp             SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred             CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence            356666 7899999999999975    59999999999999999999999999999987      678999999999999


Q ss_pred             cccccchhhHHHhhhhhhHHhhhhccCCC-hHHHHHHhcC-----CHHHHHHHHh-CCCCcccCCCCCCcHHHHHHHcCC
Q psy12892         81 ITDHQGIQRDIAAAGTSVLANCLLMGEGQ-TALHIASAEG-----DEALVKYFYG-AKANASITDHQDRTPMHLAAENGH  153 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~A~~~~-----~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~  153 (315)
                      ..+.                      .|. ||||+|+..+     ..+++++|++ .|++++..|..|.||||+|++.|+
T Consensus       109 ~~d~----------------------~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~  166 (186)
T 3t8k_A          109 ALYK----------------------PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK  166 (186)
T ss_dssp             SCBG----------------------GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTC
T ss_pred             ccCC----------------------CcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCC
Confidence            9887                      688 9999999954     3569999999 999999999999999999999999


Q ss_pred             HHHHHHHHHhcCccccc
Q psy12892        154 ASIIELLADKFRASIFE  170 (315)
Q Consensus       154 ~~~~~~Ll~~~~~~~~~  170 (315)
                      .+++++|.+. ....+.
T Consensus       167 ~~~v~~L~~~-~~~~~~  182 (186)
T 3t8k_A          167 PIALKMMEDY-IKKYNL  182 (186)
T ss_dssp             HHHHHHHHHH-HHHHTC
T ss_pred             HHHHHHHHHH-HHHHhc
Confidence            9999999974 444433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=1.2e-26  Score=175.72  Aligned_cols=143  Identities=24%  Similarity=0.286  Sum_probs=125.8

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhh
Q psy12892         15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAA   94 (315)
Q Consensus        15 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   94 (315)
                      ..+..|.||||+|+..|+.+++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++..+..         
T Consensus        39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~---------  108 (183)
T 3deo_A           39 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR---------  108 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSS---------
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC---------
Confidence            346789999999999999999999999 9999999999999999999999999999999999999877732         


Q ss_pred             hhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccC
Q psy12892         95 GTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE  174 (315)
Q Consensus        95 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  174 (315)
                                  .|.||||+|+..|+.+++++|++.|++++..+..|.||||+|++.++.                  ..
T Consensus       109 ------------~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------~~  158 (183)
T 3deo_A          109 ------------GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------TP  158 (183)
T ss_dssp             ------------SSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------CC
T ss_pred             ------------CCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------cc
Confidence                        789999999999999999999999999999999999999999873321                  23


Q ss_pred             CccHHHHHHHcCcHHHHHHHHhc
Q psy12892        175 NYNVLHLAAMYSREDVVKLLLNK  197 (315)
Q Consensus       175 ~~~~l~~a~~~~~~~~~~~Ll~~  197 (315)
                      +.+++++|+..|..+++++|.++
T Consensus       159 ~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          159 KGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccHHHHHHHcCHHHHHHHHHHh
Confidence            46788888888888888888754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=2.4e-26  Score=181.95  Aligned_cols=142  Identities=25%  Similarity=0.294  Sum_probs=113.5

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhh
Q psy12892         16 TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAG   95 (315)
Q Consensus        16 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~   95 (315)
                      .+..|.||||+|+..|+.+++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++..+..          
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~----------  109 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR----------  109 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSS----------
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCC----------
Confidence            34578889999999999999998888 8888888888889999999989999999998888888777632          


Q ss_pred             hhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCC
Q psy12892         96 TSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN  175 (315)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  175 (315)
                                 .|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+.                  ...+
T Consensus       110 -----------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~------------------~~~~  160 (244)
T 3ui2_A          110 -----------GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK------------------TTPK  160 (244)
T ss_dssp             -----------SCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT------------------TCCC
T ss_pred             -----------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh------------------ccCC
Confidence                       68888888888888888888888888888888888888888875211                  1235


Q ss_pred             ccHHHHHHHcCcHHHHHHHHhc
Q psy12892        176 YNVLHLAAMYSREDVVKLLLNK  197 (315)
Q Consensus       176 ~~~l~~a~~~~~~~~~~~Ll~~  197 (315)
                      .+||++|+..|+.+++++|++.
T Consensus       161 ~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          161 GNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcChHHHHHHHHHh
Confidence            6677777777777777776653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=8e-27  Score=168.15  Aligned_cols=127  Identities=24%  Similarity=0.344  Sum_probs=112.8

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhh
Q psy12892         15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAA   94 (315)
Q Consensus        15 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   94 (315)
                      .+|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+.          
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----------   74 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY----------   74 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCG----------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCC----------
Confidence            5788999999999999999999999999999999999999999999999999999999999998887776          


Q ss_pred             hhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q psy12892         95 GTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK  163 (315)
Q Consensus        95 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  163 (315)
                                  .|.||||+|+..++.+++++|++.|++++..+..|.||+++|+..+..+++++|.+.
T Consensus        75 ------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           75 ------------QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             ------------GGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             ------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence                        688999999999999999999999999999999999999999888888888777653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.7e-25  Score=160.86  Aligned_cols=126  Identities=25%  Similarity=0.313  Sum_probs=115.7

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHh
Q psy12892         50 NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG  129 (315)
Q Consensus        50 ~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~  129 (315)
                      ...+.||||+|+..|+.+++++|+++|++++..+.                      .|.||||+|+..++.+++++|++
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------------------~g~t~L~~A~~~~~~~~v~~Ll~   68 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDE----------------------YGLTPLYLATAHGHLEIVEVLLK   68 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------------------TSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCC----------------------CCCCHHHHHHHcCCHHHHHHHHH
Confidence            45677999999999999999999999999888776                      78999999999999999999999


Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       130 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      .|++++..+..|.||||+|+..|+.+++++|+++ |++++..+..|.|||++|+..++.+++++|++.|
T Consensus        69 ~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           69 NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999996 9999999999999999999999999999998764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=7.5e-26  Score=166.77  Aligned_cols=128  Identities=20%  Similarity=0.203  Sum_probs=112.9

Q ss_pred             cccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHH
Q psy12892         47 DIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKY  126 (315)
Q Consensus        47 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~  126 (315)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+.                      .|.||||+|+ .|+.+++++
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------------------~g~t~L~~A~-~~~~~~v~~   62 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNS----------------------YGRRPIQVMM-MGSARVAEL   62 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS----------------------SSCCTTTSSC-TTCHHHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----------------------CCCCHHHHHH-cCCHHHHHH
Confidence            34577889999999999999999999999999988776                      7899999985 899999999


Q ss_pred             HHhCCCCcccCCCCCCc-HHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        127 FYGAKANASITDHQDRT-PMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       127 Ll~~~~~~~~~~~~~~~-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      |++.|++++..+..|.| |||+|+..|+.+++++|+++ |++++..+..|.||||+|+..++.+++++|+++|
T Consensus        63 Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g  134 (156)
T 1bi7_B           63 LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA  134 (156)
T ss_dssp             HHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcC
Confidence            99999999999999999 99999999999999999997 9999988888888888888888888888777766

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=6.2e-25  Score=155.83  Aligned_cols=124  Identities=38%  Similarity=0.584  Sum_probs=112.9

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCC
Q psy12892         52 EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK  131 (315)
Q Consensus        52 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~  131 (315)
                      +|.||||+|+..|+.+++++|+++|++++..+.                      .|.||||+|+..++.+++++|++.|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----------------------~g~t~L~~A~~~~~~~~~~~Ll~~g   58 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----------------------NGRTPLHLAARNGHLEVVKLLLEAG   58 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT----------------------TSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCC----------------------CCCcHHHHHHHcCcHHHHHHHHHcC
Confidence            478999999999999999999999998887765                      6889999999999999999999999


Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       132 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      .+++..+..|.||||+|+..|+.+++++|+++ |.+++..+..|.||+++|+..++.+++++|+++|
T Consensus        59 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCCcccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            99999999999999999999999999999996 9999888888999999999988888888888765

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=5.7e-27  Score=177.47  Aligned_cols=139  Identities=22%  Similarity=0.257  Sum_probs=129.0

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHh
Q psy12892         50 NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG  129 (315)
Q Consensus        50 ~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~  129 (315)
                      +..|.||||+|+..|+.+++++|++ +++++..+.                      .|.||||+|+..|+.+++++|++
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~----------------------~g~t~L~~A~~~~~~~~v~~Ll~   97 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE----------------------NGRTALLFVAGLGSDKCVRLLAE   97 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCT----------------------TSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCC----------------------CCCCHHHHHHHcCCHHHHHHHHH
Confidence            4578899999999999999999999 999888776                      79999999999999999999999


Q ss_pred             CCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcCCCCCCcHHHH
Q psy12892        130 AKANASITD-HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHL  208 (315)
Q Consensus       130 ~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~l~~  208 (315)
                      .|++++..+ ..|.||||+|+..|+.+++++|+++ |++++..+..|.|||++|+..++           ...+.++|++
T Consensus        98 ~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~-----------~~~~~~~l~~  165 (183)
T 3deo_A           98 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILK-----------TTPKGNPMQF  165 (183)
T ss_dssp             TTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHHH-----------TCCCCSHHHH
T ss_pred             cCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhcc-----------CcccccHHHH
Confidence            999999988 8899999999999999999999997 99999999999999999998543           2457899999


Q ss_pred             HHHcCCHHHHHHHHh
Q psy12892        209 AAMYSREDVVKLLLN  223 (315)
Q Consensus       209 A~~~~~~~~~~~Ll~  223 (315)
                      |+..+..+++++|.+
T Consensus       166 a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          166 GRRIGLEKVINVLEG  180 (183)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHcCHHHHHHHHHH
Confidence            999999999999987

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=8.8e-26  Score=159.50  Aligned_cols=113  Identities=22%  Similarity=0.262  Sum_probs=99.8

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhh
Q psy12892         17 TINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGT   96 (315)
Q Consensus        17 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   96 (315)
                      +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+.            
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~------------   71 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK------------   71 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT------------
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC------------
Confidence            45788999999999999999999999999999999999999999999999999999999999888776            


Q ss_pred             hhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHc
Q psy12892         97 SVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAEN  151 (315)
Q Consensus        97 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~  151 (315)
                                .|.||||+|+..++.+++++|++.|++++..+..|.||+++|...
T Consensus        72 ----------~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           72 ----------HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             ----------TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             ----------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence                      788999999999999999999999999999999999999998443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=3.7e-26  Score=178.57  Aligned_cols=139  Identities=22%  Similarity=0.290  Sum_probs=118.4

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhc-cCCCccccccchhhHH
Q psy12892         13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA-KANASITDHQGIQRDI   91 (315)
Q Consensus        13 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~   91 (315)
                      ++..+..|.||||+||..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++ |++++..+.       
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~-------  138 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK-------  138 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCT-------
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCC-------
Confidence            566788899999999999999999999999999999999999999999999999999999998 999988876       


Q ss_pred             HhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccc
Q psy12892         92 AAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFER  171 (315)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  171 (315)
                                     .|.||||+|+..|+.+++++|++.|++++..+..|.||+++|+..|+.++++.|++. ++.....
T Consensus       139 ---------------~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~  202 (222)
T 3ehr_A          139 ---------------LGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLS  202 (222)
T ss_dssp             ---------------TSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             ---------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhcc
Confidence                           799999999999999999999999999999999999999999999999999999986 7766555


Q ss_pred             ccC
Q psy12892        172 TKE  174 (315)
Q Consensus       172 ~~~  174 (315)
                      +..
T Consensus       203 ~~~  205 (222)
T 3ehr_A          203 NAE  205 (222)
T ss_dssp             ---
T ss_pred             chh
Confidence            443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=7.8e-26  Score=162.96  Aligned_cols=131  Identities=31%  Similarity=0.383  Sum_probs=118.0

Q ss_pred             CCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHH
Q psy12892         43 GTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA  122 (315)
Q Consensus        43 g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~  122 (315)
                      |+|+ ..|..|.||||+|+..|+.+++++|+++|++++..+.                      .|.||||+|+..++.+
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----------------------~g~t~L~~A~~~~~~~   57 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH----------------------AGWTPLHEACNHGHLK   57 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----------------------TSCCHHHHHHHTTCHH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC----------------------CCCCHHHHHHHcCCHH
Confidence            5677 6789999999999999999999999999999988776                      7899999999999999


Q ss_pred             HHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhc
Q psy12892        123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK  197 (315)
Q Consensus       123 ~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  197 (315)
                      ++++|++.|.+++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||+++|+..+..+++++|.+.
T Consensus        58 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           58 VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            99999999999999999999999999999999999999996 999999999999999999998888888777654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=3.4e-25  Score=180.31  Aligned_cols=138  Identities=17%  Similarity=0.138  Sum_probs=82.1

Q ss_pred             ChHHHHHHhcCCHHHHHHHHhccCCCccc------cccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhc---CCHHHH
Q psy12892         54 QTALHIASAEGDEALVKYFYGAKANASIT------DHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE---GDEALV  124 (315)
Q Consensus        54 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~---~~~~~v  124 (315)
                      .++|+.|+..|+.+.++.|++.|++++..      +.                      .|.||||+|+..   ++.+++
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~----------------------~g~t~Lh~A~~~~~~~~~~iv  209 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQA----------------------PEELVLHLAVKVANQASLPLV  209 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCS----------------------CEECHHHHHHHTCCTTTHHHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCC----------------------CCccHHHHHHHhcccCcHHHH
Confidence            35566666666666666666666665542      22                      456666666654   566666


Q ss_pred             HHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcCCCCCCc
Q psy12892        125 KYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYN  204 (315)
Q Consensus       125 ~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~  204 (315)
                      ++|++.|++++..|..|.||||+|+..|+.+++++|++. |++++..|..|.|||++|+..++.+++++|++.+...|.|
T Consensus       210 ~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~g~t  288 (301)
T 2b0o_E          210 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF  288 (301)
T ss_dssp             HHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHTTSS
T ss_pred             HHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCC
Confidence            666666666666666666666666666666666666664 6666666666666666666666666666666666555666


Q ss_pred             HHHHHHHcCC
Q psy12892        205 VLHLAAMYSR  214 (315)
Q Consensus       205 ~l~~A~~~~~  214 (315)
                      |||+|+..|+
T Consensus       289 pLh~A~~~g~  298 (301)
T 2b0o_E          289 PLHVDYSWVI  298 (301)
T ss_dssp             CCC-------
T ss_pred             hhHHHHhcCC
Confidence            6666666554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=3.1e-24  Score=169.85  Aligned_cols=171  Identities=19%  Similarity=0.196  Sum_probs=145.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhh
Q psy12892         19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSV   98 (315)
Q Consensus        19 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   98 (315)
                      .+.+++.+++..|+.+.+..+...+.+++   ..|.||||+|+..|+.+++++|++ +++++..+.              
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~--------------   75 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLE-DRDVDAVDE--------------   75 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSCHHHH---HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCT--------------
T ss_pred             CCccHHHHHHHcCCCcccccccccccccc---cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCC--------------
Confidence            34555666666666555555444444433   568899999999999999999999 999888776              


Q ss_pred             HHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCcc
Q psy12892         99 LANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD-HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYN  177 (315)
Q Consensus        99 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  177 (315)
                              .|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+++ |++++..+..|.|
T Consensus        76 --------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t  146 (244)
T 3ui2_A           76 --------NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLT  146 (244)
T ss_dssp             --------TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCC
T ss_pred             --------CCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCc
Confidence                    79999999999999999999999999999988 7899999999999999999999997 9999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCc
Q psy12892        178 VLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGIN  228 (315)
Q Consensus       178 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~  228 (315)
                      |||+|+..++           ...+.+||++|+..|+.+++++|++ .+.+
T Consensus       147 ~l~~A~~~~~-----------~~~~~~~l~~a~~~g~~~iv~~L~~-~~~~  185 (244)
T 3ui2_A          147 ALELAREILK-----------TTPKGNPMQFGRRIGLEKVINVLEG-QVFE  185 (244)
T ss_dssp             HHHHHHHHHT-----------TCCCSSHHHHHHHHHHHHHHHHHHH-HHEE
T ss_pred             HHHHHHHHHh-----------ccCCCCHHHHHHHcChHHHHHHHHH-hccc
Confidence            9999986332           3568999999999999999999998 5444

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=4.5e-24  Score=173.67  Aligned_cols=90  Identities=19%  Similarity=0.342  Sum_probs=79.6

Q ss_pred             CCCCCCcHHHHHHHc---CCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHH
Q psy12892        137 TDHQDRTPMHLAAEN---GHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLH  207 (315)
Q Consensus       137 ~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~  207 (315)
                      .+..|.||||+|+..   |+.+++++|++. |++++..+..|+||||+|+..|+.+++++|++.+      +..|.|||+
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~  264 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD  264 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHH
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            466788999999987   889999999996 8999999999999999999999999999999876      667889999


Q ss_pred             HHHHcCCHHHHHHHHhccCCc
Q psy12892        208 LAAMYSREDVVKLLLNKKGIN  228 (315)
Q Consensus       208 ~A~~~~~~~~~~~Ll~~~~~~  228 (315)
                      +|+..++.+++++|++ .|++
T Consensus       265 ~A~~~~~~~iv~~Ll~-~ga~  284 (301)
T 2b0o_E          265 IARKKHHKECEELLEQ-AQAG  284 (301)
T ss_dssp             HHHHHTCHHHHHHHHH-HHHH
T ss_pred             HHHHcCCHHHHHHHHH-hcCC
Confidence            9999999999999998 7765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=8e-24  Score=149.38  Aligned_cols=117  Identities=20%  Similarity=0.237  Sum_probs=105.5

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHh
Q psy12892         50 NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG  129 (315)
Q Consensus        50 ~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~  129 (315)
                      +..|.||||+|+..|+.+++++|++.|++++..+.                      .|.||||+|+..++.+++++|++
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~----------------------~g~t~L~~A~~~~~~~~v~~Ll~   61 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE----------------------GGRKPLHYAADCGQLEILEFLLL   61 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCT----------------------TSSCHHHHHHHTTCHHHHHHHHT
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCC----------------------CCCcHHHHHHHcCCHHHHHHHHH
Confidence            46788999999999999999999999999888776                      78999999999999999999999


Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHH
Q psy12892        130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRED  189 (315)
Q Consensus       130 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~  189 (315)
                      .|++++..+..|.||||+|+..|+.+++++|+++ |++++..+..|.||+++|...+..+
T Consensus        62 ~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHhCCHHHHH
Confidence            9999999999999999999999999999999996 9999999999999999995544333

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=3e-23  Score=138.73  Aligned_cols=93  Identities=38%  Similarity=0.622  Sum_probs=87.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhh
Q psy12892         19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSV   98 (315)
Q Consensus        19 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   98 (315)
                      +|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+.              
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~--------------   66 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK--------------   66 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--------------
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC--------------
Confidence            589999999999999999999999999999999999999999999999999999999999998876              


Q ss_pred             HHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCC
Q psy12892         99 LANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN  133 (315)
Q Consensus        99 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~  133 (315)
                              .|.||||+|+..++.+++++|++.|++
T Consensus        67 --------~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           67 --------NGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             --------TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             --------CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                    799999999999999999999998864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=3.8e-23  Score=171.88  Aligned_cols=126  Identities=24%  Similarity=0.311  Sum_probs=105.9

Q ss_pred             cccCCCcHHHHHHHc-CCHHHHHHHHHcCCcccccC--CCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHH
Q psy12892         16 TTINGDTALHLAARK-RDLDMVRILVDYGTSVDIQN--GEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIA   92 (315)
Q Consensus        16 ~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~--~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   92 (315)
                      .+.++.|+||.|+.. |+++++++|+++|++++..+  ..|.||||+|+..|+.+++++|+++|++++..+.        
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~--------  266 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS--------  266 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--------
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC--------
Confidence            334566788888888 88888888888888888777  7888888888888888888888888888887765        


Q ss_pred             hhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q psy12892         93 AAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK  163 (315)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  163 (315)
                                    .|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++.
T Consensus       267 --------------~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~  323 (368)
T 3jue_A          267 --------------AGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA  323 (368)
T ss_dssp             --------------TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             --------------CCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence                          688888888888888888888888888888888888888888888888888888875

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=1.1e-22  Score=163.63  Aligned_cols=121  Identities=23%  Similarity=0.286  Sum_probs=76.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCccc------ccCCCCChHHHHHHhc---CCHHHHHHHHhccCCCccccccchhhHH
Q psy12892         21 DTALHLAARKRDLDMVRILVDYGTSVD------IQNGEGQTALHIASAE---GDEALVKYFYGAKANASITDHQGIQRDI   91 (315)
Q Consensus        21 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~   91 (315)
                      .++|+.|+..|+++.++.+++.|++++      ..+..|.||||+|+..   |+.+++++|+++|++++..+.       
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~-------  203 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-------  203 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT-------
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCC-------
Confidence            346666666666666666666666633      2355566666666666   566666666666666665554       


Q ss_pred             HhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q psy12892         92 AAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK  163 (315)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  163 (315)
                                     .|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++.
T Consensus       204 ---------------~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  260 (278)
T 1dcq_A          204 ---------------KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA  260 (278)
T ss_dssp             ---------------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ---------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence                           566666666666666666666666666666666666666666666666666666664

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=1.9e-23  Score=163.14  Aligned_cols=128  Identities=22%  Similarity=0.235  Sum_probs=109.0

Q ss_pred             ccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHH
Q psy12892         48 IQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF  127 (315)
Q Consensus        48 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~L  127 (315)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+.                      .|.||||+|+..|+.+++++|
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------------------~g~t~L~~A~~~~~~~~v~~L  125 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK----------------------AGSTALYWACHGGHKDIVEML  125 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------------------TSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCccccCC----------------------CCCCHHHHHHHcCCHHHHHHH
Confidence            3456778999999999999999999999999887776                      788999999999999999999


Q ss_pred             HhC-CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        128 YGA-KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       128 l~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      ++. |++++..+..|.||||+|+..|+.+++++|+++ |++++..+..|.|||++|+..+..++++.|++.+
T Consensus       126 l~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~  196 (222)
T 3ehr_A          126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGTD  196 (222)
T ss_dssp             TTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC------
T ss_pred             HcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhccc
Confidence            988 999999999999999999999999999999997 9999988888888888888888878877777655

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.89  E-value=3.1e-23  Score=144.52  Aligned_cols=109  Identities=25%  Similarity=0.414  Sum_probs=96.8

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhh
Q psy12892         15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAA   94 (315)
Q Consensus        15 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   94 (315)
                      .+|.+|.||||+||..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+.          
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~----------   73 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK----------   73 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCT----------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCC----------
Confidence            3678999999999999999999999999999999999999999999999999999999999999887776          


Q ss_pred             hhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHH
Q psy12892         95 GTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPM  145 (315)
Q Consensus        95 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l  145 (315)
                                  .|.|||++|+..++.+++++|++.|++++..+..+.+|-
T Consensus        74 ------------~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           74 ------------DGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             ------------TCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             ------------CCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence                        688999999999999999999999999998888887763

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=7.5e-22  Score=164.11  Aligned_cols=140  Identities=21%  Similarity=0.190  Sum_probs=118.3

Q ss_pred             CCCChHHHHHHhc-CCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHh
Q psy12892         51 GEGQTALHIASAE-GDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG  129 (315)
Q Consensus        51 ~~g~t~l~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~  129 (315)
                      ..+.|+||.|+.. ++.+++++|+++|++++..+...                    .|.||||+|+..|+.+++++|++
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~--------------------~g~TpLh~Aa~~g~~~iv~~LL~  256 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQ--------------------DNATPLIQATAANSLLACEFLLQ  256 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTT--------------------TCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcccccc--------------------CCCCHHHHHHHCCCHHHHHHHHH
Confidence            3456899999999 99999999999999999876211                    78999999999999999999999


Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC---------CC
Q psy12892        130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK---------GI  200 (315)
Q Consensus       130 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~---------~~  200 (315)
                      .|++++..+..|.||||+|+..|+.+++++|++. |++++..+..|.|||++|+..++.+++++|+..+         +.
T Consensus       257 ~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~  335 (368)
T 3jue_A          257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA  335 (368)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCC
Confidence            9999999999999999999999999999999996 9999999999999999999999999999999765         23


Q ss_pred             CCCcHHHHHHH
Q psy12892        201 ENYNVLHLAAM  211 (315)
Q Consensus       201 ~~~~~l~~A~~  211 (315)
                      .+.++++.+..
T Consensus       336 ~~~t~l~i~~~  346 (368)
T 3jue_A          336 GDETYLDIFRD  346 (368)
T ss_dssp             -----------
T ss_pred             CCCCHHHHHHH
Confidence            34555555443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=3e-21  Score=128.93  Aligned_cols=92  Identities=38%  Similarity=0.632  Sum_probs=67.6

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCC
Q psy12892         52 EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK  131 (315)
Q Consensus        52 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~  131 (315)
                      +|.||||+|+..|+.+++++|+++|++++..+.                      .|.||||+|+..++.+++++|++.|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~----------------------~g~t~L~~A~~~~~~~~v~~Ll~~g   58 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----------------------NGRTPLHLAARNGHLEVVKLLLEAG   58 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------------------TSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC----------------------CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            366777777777777777777777777776665                      5777777777777777777777777


Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q psy12892        132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRA  166 (315)
Q Consensus       132 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~  166 (315)
                      ++++..+..|.||||+|+..|+.+++++|++. |+
T Consensus        59 a~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~-ga   92 (93)
T 1n0q_A           59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GA   92 (93)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence            77777777777777777777777777777764 44

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=1e-20  Score=152.24  Aligned_cols=118  Identities=20%  Similarity=0.232  Sum_probs=105.8

Q ss_pred             ChHHHHHHhcCCHHHHHHHHhCCCCcc------cCCCCCCcHHHHHHHc---CCHHHHHHHHHhcCccccccccCCccHH
Q psy12892        109 QTALHIASAEGDEALVKYFYGAKANAS------ITDHQDRTPMHLAAEN---GHASIIELLADKFRASIFERTKENYNVL  179 (315)
Q Consensus       109 ~~~l~~A~~~~~~~~v~~Ll~~~~~~~------~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~l  179 (315)
                      .++|+.|+..++.+.+..+++.|.+++      ..+..|.||||+|+..   |+.+++++|+++ |++++..+..|+|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHH
Confidence            368999999999999999999998843      4478899999999999   899999999997 999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCc
Q psy12892        180 HLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGIN  228 (315)
Q Consensus       180 ~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~  228 (315)
                      |+|+..|+.+++++|++.|      +..|.||||+|+..++.+++++|++ .|++
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~  263 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ-ALSG  263 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence            9999999999999999887      6789999999999999999999998 5543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=3.8e-21  Score=133.89  Aligned_cols=109  Identities=29%  Similarity=0.449  Sum_probs=100.2

Q ss_pred             ccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHH
Q psy12892         48 IQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF  127 (315)
Q Consensus        48 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~L  127 (315)
                      ..|..|.||||+|+..|+.+++++|+++|++++..+.                      .|.||||+|+..++.+++++|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~----------------------~g~t~L~~A~~~~~~~~~~~L   61 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK----------------------DGNTPLHLAAKNGHAEIVKLL   61 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS----------------------SSCCTTHHHHTTTCHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------------------CCCCHHHHHHHcCcHHHHHHH
Confidence            3578999999999999999999999999999988776                      789999999999999999999


Q ss_pred             HhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHH
Q psy12892        128 YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVL  179 (315)
Q Consensus       128 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l  179 (315)
                      ++.|++++..+..|.|||++|+..|+.+++++|+++ |++++..+..+.+|-
T Consensus        62 l~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           62 LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-SSSHHHHSCCCC---
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCccccccc
Confidence            999999999999999999999999999999999996 999999998888763

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.83  E-value=2.9e-20  Score=128.17  Aligned_cols=97  Identities=30%  Similarity=0.381  Sum_probs=85.1

Q ss_pred             chhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchh
Q psy12892          9 TAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQ   88 (315)
Q Consensus         9 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~   88 (315)
                      .+......|.+|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+.    
T Consensus        13 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~----   88 (110)
T 2zgd_A           13 LVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK----   88 (110)
T ss_dssp             ---------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----
T ss_pred             CCCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc----
Confidence            3445778899999999999999999999999999999999999999999999999999999999999999988876    


Q ss_pred             hHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHH
Q psy12892         89 RDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF  127 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~L  127 (315)
                                        .|.||||+|+..++.+++++|
T Consensus        89 ------------------~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           89 ------------------FGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             ------------------TSCCHHHHHHHHTCHHHHHHH
T ss_pred             ------------------CCCcHHHHHHHcCCHHHHHHh
Confidence                              799999999999999999986

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=2e-18  Score=118.82  Aligned_cols=91  Identities=24%  Similarity=0.397  Sum_probs=62.2

Q ss_pred             ccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHH
Q psy12892         48 IQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF  127 (315)
Q Consensus        48 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~L  127 (315)
                      ..+.+|.||||+|+..|+.+++++|+++|++++..+.                      .|.||||+|+..|+.+++++|
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~----------------------~g~tpLh~A~~~~~~~~v~~L   76 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK----------------------NGSTPLHLAARNGHLEVVKLL   76 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------------------TCCCHHHHHHHTTCHHHHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCC----------------------CCCCHHHHHHHcCCHHHHHHH
Confidence            3456666777777777777777777777776666554                      566777777777777777777


Q ss_pred             HhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy12892        128 YGAKANASITDHQDRTPMHLAAENGHASIIELL  160 (315)
Q Consensus       128 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  160 (315)
                      ++.|++++..+..|.||||+|+..|+.+++++|
T Consensus        77 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           77 LEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            777777777777777777777777777776655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-27
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-27
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-20
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-20
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-20
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-19
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-19
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-14
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-17
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-16
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.003
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-15
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.003
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-12
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-11
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-10
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	9e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 1e-27
 Identities = 59/223 (26%), Positives = 91/223 (40%), Gaps = 30/223 (13%)

Query: 22  TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
           T LH+A+    L +V+ L+  G S ++ N + +T LH+A+  G   + KY    KA  + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 82  TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQD 141
                                    + QT LH A+  G   +VK      AN ++     
Sbjct: 62  KAK----------------------DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 99

Query: 142 RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------ 195
            TP+H  A         L   +  AS    TK+ +  LH+AA Y +  V +LLL      
Sbjct: 100 HTPLH-IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 158

Query: 196 NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLT 238
           N  G      LH+A  ++  D+VK LL  +G +  +      T
Sbjct: 159 NAAGKNGLTPLHVAVHHNNLDIVK-LLLPRGGSPHSPAWNGYT 200

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 5e-27
 Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 18/222 (8%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
            + +  +T LH+AAR    ++ + L+     V+ +  + QT LH A+  G   +VK    
Sbjct: 28  VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 87

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGE-----------GQTALHIASAEGDEAL 123
             AN ++    G      AA    +   L + E           G T LH+A+  G   +
Sbjct: 88  NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV 147

Query: 124 VKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAA 183
            +      A+ +       TP+H+A  + +  I++LL  +   S        Y  LH+AA
Sbjct: 148 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAA 206

Query: 184 MYSREDVVKLLLN------KKGIENYNVLHLAAMYSREDVVK 219
             ++ +V + LL        + ++    LHLAA     ++V 
Sbjct: 207 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 248

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (235), Expect = 1e-22
 Identities = 59/238 (24%), Positives = 95/238 (39%), Gaps = 19/238 (7%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           + ELL  + A    A   NG T LH+A    +LD+V++L+  G S       G T LHIA
Sbjct: 147 VAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 205

Query: 61  SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMG-----------EGQ 109
           + +    + +       +A+    QG+     AA         L+             G 
Sbjct: 206 AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGL 265

Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
           T LH+ + EG   +             T     TP+H+A+  G+  +++    + +A + 
Sbjct: 266 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQADVN 324

Query: 170 ERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
            +TK  Y+ LH AA     D+V LLL      N+   +    L +A       V  +L
Sbjct: 325 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 2e-21
 Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 23/183 (12%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
           A ++ G T LHLAA++   +MV +L+    + ++ N  G T LH+ + EG   +      
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

Query: 73  YGAKANASITDHQ---------GIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEAL 123
           +G   +A+              G  + +                G + LH A+ +G   +
Sbjct: 286 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 345

Query: 124 VKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL------------ADKFRASIFER 171
           V       A+ +       TP+ +A   G+ S+ ++L            +DK R S  E 
Sbjct: 346 VTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPET 405

Query: 172 TKE 174
             E
Sbjct: 406 VDE 408

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 1e-26
 Identities = 58/253 (22%), Positives = 95/253 (37%), Gaps = 32/253 (12%)

Query: 18  INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGE-GQTALHIASAEGDEALVKYFYGAK 76
           +  +  L  A +  D+D+V+ L++ G +V+ Q  E G T LH A     E +V+      
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 77  ANASITDHQGIQRDIAAAGTSVLANCLLMGE-----------GQTALHIASAEGDEALVK 125
           A+  +    G    + AA    +    L              G TA   A+  G    +K
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 126 YFYGAKANASITDHQD----------RTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
           + Y   AN ++                T +  AAE GH  ++++L D+  A +       
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 176 YNVLHLAAMYSR----EDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKK 225
            N L  A + S     E +  LLL      N +G      L LA       +V+ LL ++
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

Query: 226 GINVAALGGEDLT 238
            I +     +  T
Sbjct: 243 HIEINDTDSDGKT 255

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 5e-17
 Identities = 45/238 (18%), Positives = 81/238 (34%), Gaps = 59/238 (24%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
            G T LH A +    D+V +L+ +G    ++   G T   +A+  G   L+K F    A+
Sbjct: 38  GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGE---------------------GQTALHIASA 117
            +  D  G    + AA    +     + +                     G TAL  A+ 
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157

Query: 118 EGDEALVKYF---YGAKANA-----------------------------------SITDH 139
           +G   ++K      GA  NA                                   ++   
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217

Query: 140 QDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK 197
           + +TP+ LA E  H  +++ L ++    I +   +    L LA     + + +LL  +
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 2e-14
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 11  EQLKATTINGDTALHLAARKRDLDMVRILVD-YGTSVDIQNGEGQTALHIASAEGDEALV 69
           E  +     G TAL  AA K  +++++IL+D  G  V+  +  G+               
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR--------------- 183

Query: 70  KYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG 129
                A  ++  +D + I   +   G  V         G+T L +A  +    LV+    
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRG---ERGKTPLILAVEKKHLGLVQRLLE 240

Query: 130 AK-ANASITDHQDRTPMHLAAENGHASIIELLADK 163
            +    + TD   +T + LA E     I ELL  +
Sbjct: 241 QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 1e-10
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVD-YGTSVDIQNGEGQTALHIASAEGDEALVKYFY 73
                G T L LA  K+ L +V+ L++     ++  + +G+TAL +A     + + +   
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

Query: 74  GAKANASITD 83
              A+    D
Sbjct: 274 KRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQN 50
           + + L  Q   ++  T  +G TAL LA   +   +  +L   G S D  +
Sbjct: 234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.5 bits (210), Expect = 4e-20
 Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 34/240 (14%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYG---TSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
           +GDTALHLA   +    +  L+ +      +D+QN  GQTALH+A+  G+ + V+  Y A
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 76  KANASITDHQGIQ-------------------------RDIAAAGTSVLANCLLMGEGQT 110
            A   + +  G                           RD +    +   +C        
Sbjct: 68  GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127

Query: 111 ALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFE 170
           A   +    +          +      ++   TP+H+A  +  A ++ LL D        
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 171 RTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNK 224
                   LHLA       V++LLL        +       L  A +     + +LL   
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 2e-11
 Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 4/137 (2%)

Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQD---RTPMHLAAENGHASIIELLADK 163
           +G TALH+A     E  + +  G  A     D Q+   +T +HLAA  G AS +E     
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK-LYA 66

Query: 164 FRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLN 223
             A +    +  +  LHLA          +LL  +     +        S++        
Sbjct: 67  AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126

Query: 224 KKGINVAALGGEDLTGR 240
              ++       +   R
Sbjct: 127 PAAVDSQPNPENEEEPR 143

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (118), Expect = 9e-08
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 22  TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
           T LHLA   +   ++ +L+  G     +   G+T L  A    +  L +    +GA 
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYG 43
           + ELL    A+   A    G T L  A  + +  + R+L  +G
Sbjct: 207 VLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHG 248

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 9/53 (16%)

Query: 172 TKENYNVLHLAAMYSREDVVKLLL---------NKKGIENYNVLHLAAMYSRE 215
           T++    LHLA ++  E  +  LL         + +       LHLAA+    
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 86.9 bits (214), Expect = 4e-20
 Identities = 29/262 (11%), Positives = 62/262 (23%), Gaps = 45/262 (17%)

Query: 13  LKATTINGDTALHLAARK---RDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALV 69
                I  +    +AA       LD + +L+     V +   E   A  +A+  G   ++
Sbjct: 83  AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL 142

Query: 70  KYF--YGAKANASITDHQG--------------IQRDIAAAGTSVLANCLLMGEGQTALH 113
                       ++   +               +   +     +     +          
Sbjct: 143 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 202

Query: 114 IASAEGDEALVKYFYGAKA-------NASITDHQDRTPMHLAAENGHASIIELL------ 160
            A   G   ++ +             +      +   P      N    + +        
Sbjct: 203 AAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPD 262

Query: 161 --ADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIEN-----------YNVLH 207
              D    S   +       L         D ++ LL+  GI+              +L 
Sbjct: 263 GVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR 322

Query: 208 LAAMYSREDVVKLLLNKKGINV 229
           LA     +    LLL+   +  
Sbjct: 323 LALRLGNQGACALLLSIPSVLA 344

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 86.9 bits (214), Expect = 6e-20
 Identities = 27/207 (13%), Positives = 55/207 (26%), Gaps = 13/207 (6%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVD---IQNGEGQTAL 57
           +  L      E +         A  LAA    L ++  L +   +     IQ        
Sbjct: 142 LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 201

Query: 58  HIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASA 117
             A   G   ++ +        +  +    +         +  +   + E   A  +++ 
Sbjct: 202 WAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNP 261

Query: 118 EGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL----ADKFRASIFERTK 173
           +G   LV        +  +        +    +      I  L      K  A       
Sbjct: 262 DGVFDLVT------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG 315

Query: 174 ENYNVLHLAAMYSREDVVKLLLNKKGI 200
           +   +L LA     +    LLL+   +
Sbjct: 316 DANELLRLALRLGNQGACALLLSIPSV 342

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.1 bits (173), Expect = 1e-14
 Identities = 28/232 (12%), Positives = 61/232 (26%), Gaps = 35/232 (15%)

Query: 12  QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDI-----------QNGEGQTALHIA 60
            L   +      + L   K    + ++L  Y    +            +  + +    +A
Sbjct: 38  SLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVA 97

Query: 61  SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
           +  G  + +        +  I                         E   A  +A+  G 
Sbjct: 98  AITGCSSALDTLCLLLTSDEIVKVIQ-------------------AENYQAFRLAAENGH 138

Query: 121 EALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFR--ASIFERTKENY 176
             ++            ++   ++     LAAENGH  ++  L +     A+   + +  Y
Sbjct: 139 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 198

Query: 177 NVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGIN 228
                A      +V+  LL    +           Y  + V   +       
Sbjct: 199 AFRWAAVGRGHHNVINFLL-DCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL 249

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 61.8 bits (149), Expect = 2e-11
 Identities = 33/189 (17%), Positives = 55/189 (29%), Gaps = 24/189 (12%)

Query: 48  IQNGEGQTALHIASAEGDEALVKYFYGAKAN--ASITDHQGIQRDIAAAGTSVLANCLLM 105
           I+N E    L +      E L ++F  A      +++  + I   +           LL 
Sbjct: 7   IENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLC 66

Query: 106 GEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLAD--K 163
                      A  +    +      ++A     +      +AA  G +S ++ L     
Sbjct: 67  LYY--------AHYNRNAKQL----WSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLT 114

Query: 164 FRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIEN--------YNVLHLAAMYSRE 215
               +     ENY    LAA      V+  L      E         Y+   LAA     
Sbjct: 115 SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL 174

Query: 216 DVVKLLLNK 224
            V+  L   
Sbjct: 175 HVLNRLCEL 183

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 4e-19
 Identities = 47/226 (20%), Positives = 82/226 (36%), Gaps = 25/226 (11%)

Query: 19  NGDTALHLAARKRDLDMVRILVDY----GTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
           +GDT LH+A  + +L  V  LV+     G  +DI N   QT LH+A      ++V+    
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLL---------------MGEGQTALHIASAEG 119
           A A+    D  G      A                            +G TALH+A    
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 120 DEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVL 179
            +  V+      A+    D +      + A   ++  +  L  +  A++  +     + L
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 181

Query: 180 HLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVK 219
           H A+      +V+ L+      + K   N   L +A      D+++
Sbjct: 182 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 8e-19
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 20/220 (9%)

Query: 21  DTALHLAARKRDLDMVR-ILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
           +  +   A    L+ ++  ++   +     + + +TALH A + G   +V++        
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 80  SITDHQGIQR--DIAAAGTSVLANCLLMG---------EGQTALHIASAEGDEALVKYFY 128
           +  D  G       A+AG   +   LL            G T LH A+++    +     
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 129 GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRE 188
              AN    DH + T MH AA  G+  +I +L   ++AS   +  E    LHLA    R 
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHIL-LYYKASTNIQDTEGNTPLHLACDEERV 182

Query: 189 DVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLL 222
           +  KLL+        +  E    L +A       ++K ++
Sbjct: 183 EEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 2e-15
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 24/160 (15%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           I + L  + A Q+ A   NG T LH AA K   ++  +L++ G + D ++    TA+H A
Sbjct: 85  IVKALLGKGA-QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 143

Query: 61  SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
           +A+G+  ++      KA+ +I D                       EG T LH+A  E  
Sbjct: 144 AAKGNLKMIHILLYYKASTNIQDT----------------------EGNTPLHLACDEER 181

Query: 121 EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
               K      A+  I + +++TP+ +A   G   I++ +
Sbjct: 182 VEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 7e-14
 Identities = 46/228 (20%), Positives = 78/228 (34%), Gaps = 58/228 (25%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARK------------------------------ 30
           + E +    +     T  +  TALH A                                 
Sbjct: 19  LKESILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 77

Query: 31  ---RDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGI 87
                 ++V+ L+  G  V+  N  G T LH A+++    +        AN    DH   
Sbjct: 78  ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH--- 134

Query: 88  QRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHL 147
                                 TA+H A+A+G+  ++      KA+ +I D +  TP+HL
Sbjct: 135 -------------------YEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 175

Query: 148 AAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
           A +       +LL  +  ASI+   KE    L +A       ++K ++
Sbjct: 176 ACDEERVEEAKLLVSQ-GASIYIENKEEKTPLQVAK-GGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 2e-08
 Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 7/133 (5%)

Query: 112 LHIASAEGD-EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFE 170
           +   +  G  E L +     K+ A+ TD   RT +H A   GH  I+E L         +
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 171 RTKENYNVLHLAAMYSREDVVKLL-----LNKKGIENYNVLHLAAMYSREDVVKLLLNKK 225
                  +   A+    E V  LL     +N         LH AA  +R ++  +LL + 
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EG 125

Query: 226 GINVAALGGEDLT 238
           G N  A    + T
Sbjct: 126 GANPDAKDHYEAT 138

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 78.6 bits (192), Expect = 2e-17
 Identities = 46/261 (17%), Positives = 88/261 (33%), Gaps = 41/261 (15%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDY--------GTSVDIQNGE 52
           I E ++ ++   +     +  T LH  A     +    L+ +        G  V+  + +
Sbjct: 16  ITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD 73

Query: 53  GQTALHIASAEGDEALVKYFYGAKANASIT--------------DHQGIQRDIAAAGTSV 98
             T L +A       LV Y   A A+ +I                  G+   +  +    
Sbjct: 74  ENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK 133

Query: 99  LANCLLMGEGQTALHIASAEG-----------DEALVKYFYGAKANASITDHQDRTPMHL 147
                L   G TAL I +               E   K  Y   A      ++ RT +H 
Sbjct: 134 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 193

Query: 148 AAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIE 201
           AA+  +  I++ L  +  ++  ++ ++    + LAA   R +VV  L+            
Sbjct: 194 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT 253

Query: 202 NYNVLHLAAMYSREDVVKLLL 222
           ++    LA   +  ++V +  
Sbjct: 254 DHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 44/258 (17%), Positives = 81/258 (31%), Gaps = 42/258 (16%)

Query: 21  DTALHLAARKRD-LDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY-------- 71
           ++ + L         +   +     ++ I     +T LH  ++       +         
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 72  FYGAKANASITDHQG-----------IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
              A A+ +  D               +R +A    +     +     ++ALH A+A  D
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRD 119

Query: 121 EALVKYFYGA---KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYN 177
             ++ Y   +   K +    D    T + + A N     +                    
Sbjct: 120 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR 179

Query: 178 V----------LHLAAMYSREDVVKLLLNKKGIENYNV-------LHLAAMYSREDVVKL 220
                      LH AA  S   +VK L+ +KG             + LAA   R +VV  
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 221 LLNKKGINVAALGGEDLT 238
           L+ ++G +V A+   D T
Sbjct: 240 LI-QQGASVEAVDATDHT 256

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.2 bits (188), Expect = 3e-17
 Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 27/228 (11%)

Query: 21  DTALHLAARKRDLDMVRILVD-YGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
           +  LH A  + +   V+ L+    + +  ++ +G+  LH + +     +  +      N 
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 80  SITD----------------HQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEAL 123
           ++ D                                    +  +G T LH+A  +    +
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 124 VKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAA 183
            ++     A+  I D  ++ P+H AA  G   +IELL    ++++  + K+ +  L  A 
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 184 MYSREDVVKLLLNKKGI-------ENYNVLHLAAMYSREDVVKLLLNK 224
                D   LL+ K G        +      +A     E V K  LN 
Sbjct: 181 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (143), Expect = 3e-11
 Identities = 36/212 (16%), Positives = 64/212 (30%), Gaps = 21/212 (9%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
           ELL ++ +  L     +G   LH +   +  ++   L+    +V++ +    +       
Sbjct: 18  ELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI 76

Query: 63  EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLL----------------MG 106
                 ++            D   I           +                       
Sbjct: 77  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 136

Query: 107 EGQTALHIASAEGDEALVKYFYGA-KANASITDHQDRTPMHLAAENGHASIIELLADKFR 165
             Q  LH A++ G   L++   G  K+  +  D Q  TP+  A   GH     LL +K+ 
Sbjct: 137 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 196

Query: 166 ASIFERTKENYNVLHLAAMYSREDVVKLLLNK 197
           A       +      +A     E V K  LN 
Sbjct: 197 AEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 19  NGDTALHLAARKRDLDMVRILVD-YGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
            G T L  A  +   D   +LV+ YG   D+ + +G  A  +A    +E + K+F     
Sbjct: 171 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV 227

Query: 78  NA 79
           +A
Sbjct: 228 DA 229

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 75.5 bits (184), Expect = 3e-16
 Identities = 40/256 (15%), Positives = 79/256 (30%), Gaps = 50/256 (19%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
           +       A    D + V  L++ G  ++  N +G TALH A  + +  +VK+     AN
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 79  ---------------------------------ASITDHQGIQRDIAAAGTSVLANCLLM 105
                                                + +G      A   ++       
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 106 GEGQTA-----LHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
              Q                    ++      N         T +H+AA  G+  +++LL
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 161 ADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSR 214
             + R  +  +  + +  LH AA + +E+  ++L+                  +A     
Sbjct: 219 -IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD---- 273

Query: 215 EDVVKLLLN-KKGINV 229
           ED++  L   +K  N+
Sbjct: 274 EDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 22/111 (19%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
               +G TALH+AA K   +++++L+     V+I++ +G T LH A+  G E   +    
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK 125
              +    +                        GQTA  +A  +    L +
Sbjct: 254 NLCDMEAVNK----------------------VGQTAFDVADEDILGYLEE 282

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV 190
           K   +     D      A  +G    +  L ++  A I     +    LH A +    D+
Sbjct: 30  KRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDM 88

Query: 191 VKL 193
           VK 
Sbjct: 89  VKF 91

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.7 bits (182), Expect = 5e-16
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 32/196 (16%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIAS----------------- 61
           +G+T LH      +L++V+ LV +G++    +  G++ L  A                  
Sbjct: 106 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 165

Query: 62  -----AEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLA------NCLLMGEGQT 110
                   D       +     + +T      +         +             E ++
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 111 ALHIASAEGDEALVKYF---YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
             +  + E  +++++     +      +  D    T +++AA  G+ SI++ L D   A 
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GAD 284

Query: 168 IFERTKENYNVLHLAA 183
            F   K     +   A
Sbjct: 285 PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.8 bits (164), Expect = 1e-13
 Identities = 33/237 (13%), Positives = 76/237 (32%), Gaps = 17/237 (7%)

Query: 3   ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQ-NGEGQTALHIAS 61
             L+  ++ +      +     H++      ++     +   +++I  +  G T LH  +
Sbjct: 56  TSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLT 115

Query: 62  AEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDE 121
           +  +  LVK+     +N    D+ G    + A  +    +          L+      D 
Sbjct: 116 SIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS 175

Query: 122 ALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHL 181
                 +     + +T          AA+     ++  +  K    I   T E  +  + 
Sbjct: 176 MNRTILHHIIITSGMTGCSA------AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229

Query: 182 AAMYSREDVVKLL---------LNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
                ++ +++ L         LN +       L++AA      +V  LL   G + 
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL-DYGADP 285

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.8 bits (138), Expect = 4e-10
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 13  LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
           L A   NGDT L++AAR  ++ +V  L+DYG    I N  G   +   
Sbjct: 252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 2e-15
 Identities = 44/210 (20%), Positives = 82/210 (39%), Gaps = 24/210 (11%)

Query: 19  NGDTALHLAARKRDLDMVRILVDY----GTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
           +GD+ LHLA    +  +   ++         ++ QN   QT LH+A       + +   G
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 75  AKANASITDHQGIQRDIAAAGTSVLANCLLMGE-----------------GQTALHIASA 117
           A  +  + D +G      A     LA+  ++ +                 G T LH+AS 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 118 EGDEALVKYFYGAKANASITDHQD-RTPMHLAAENGHASIIELLADKFRASIFERTKENY 176
            G   +V+      A+ +  +  + RT +HLA +  +  ++ LL     A +   T + Y
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGY 179

Query: 177 NVLHLAAMYSREDVVKLLLNKKGIENYNVL 206
           +   L        + + L  +  +EN  +L
Sbjct: 180 SPYQLTWGRPSTRIQQQLG-QLTLENLQML 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 7e-09
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 105 MGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL---- 160
              G+TALH+A    +  LV       A+ +   +Q  +P  L        I + L    
Sbjct: 142 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 201

Query: 161 ADKFRASIFERTKENYNV 178
            +  +       +E+Y+ 
Sbjct: 202 LENLQMLPESEDEESYDT 219

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 1e-07
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
           NG TALHLA   ++ D+V +L+  G  V+    +G +   +        + +       +
Sbjct: 144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

Query: 77  ANASITD 83
               + +
Sbjct: 204 NLQMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 35/208 (16%), Positives = 67/208 (32%), Gaps = 27/208 (12%)

Query: 52  EGQTALHIASAEGDEA----LVKYFYGAKANASITDHQG---------IQRDIAAAGTSV 98
           +G + LH+A    ++A    +++   G  A  +  ++             +   A     
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 99  LANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQ--------DRTPMHLAAE 150
                 + + +    +  A     L       ++  +   H           T +HLA+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 151 NGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYN 204
           +G+  I+ELL         +        LHLA      D+V LLL      N+   + Y+
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 205 VLHLAAMYSREDVVKLLLNKKGINVAAL 232
              L        + + L      N+  L
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQML 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 25/129 (19%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYG-TSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
           NG T LHLA+    L +V +LV  G      +   G+TALH+A    +  LV       A
Sbjct: 110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 169

Query: 78  NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANAS 135
           + +   +                      +G +   +        + +       +    
Sbjct: 170 DVNRVTY----------------------QGYSPYQLTWGRPSTRIQQQLGQLTLENLQM 207

Query: 136 ITDHQDRTP 144
           + + +D   
Sbjct: 208 LPESEDEES 216

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 4/29 (13%), Positives = 8/29 (27%)

Query: 15  ATTINGDTALHLAARKRDLDMVRILVDYG 43
             T  G +   L   +    + + L    
Sbjct: 173 RVTYQGYSPYQLTWGRPSTRIQQQLGQLT 201

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 65.2 bits (157), Expect = 3e-13
 Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 20/206 (9%)

Query: 35  MVRILVDYGTSVDI-QNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAA 93
           ++  L+  G  ++   +  G+T+LH+A+        K    A A+A+  D+ G     AA
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 94  AGTSVLANCLL------------MGEGQTALHIASAEGDEALVKYFYGAKANASITDHQD 141
                +    +            M +G T L +A+    E +V+    A A+ +  D+  
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG 123

Query: 142 RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------ 195
           +T +H AA   +   +  +     A+   +  ++   L LAA     +  K LL      
Sbjct: 124 KTALHWAAAVNNTEAVN-ILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 182

Query: 196 NKKGIENYNVLHLAAMYSREDVVKLL 221
                 +     +A+     D+V+LL
Sbjct: 183 EITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.3 bits (147), Expect = 7e-12
 Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 13/188 (6%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
            G+T+LHLAAR    D  + L+D G   + Q+  G+T LH A A     + +     +A 
Sbjct: 22  TGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT 81

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLM------------GEGQTALHIASAEGDEALVKY 126
                       +  A    +   +                G+TALH A+A  +   V  
Sbjct: 82  NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNI 141

Query: 127 FYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS 186
                AN    D +D TP+ LAA  G     + L D   A+       +     +A+   
Sbjct: 142 LLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN-FANREITDHMDRLPRDVASERL 200

Query: 187 REDVVKLL 194
             D+V+LL
Sbjct: 201 HHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 7/47 (14%)

Query: 116 SAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELL 160
           +A+    ++      GA+ NA+  D    T +HLAA    A   + L
Sbjct: 1   TAQ----VISDLLAQGAELNAT-MDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 1   IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRIL 39
             + L    A   + T         +A+ +   D+VR+L
Sbjct: 171 ASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL 208

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.0 bits (146), Expect = 4e-12
 Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 12/153 (7%)

Query: 19  NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
           +    L  AAR    D VRIL+  G         G + LH+A+  G  +  +    A  +
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDW-LGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 79  ASITDHQGIQRDIAAAGTSVLA-----------NCLLMGEGQTALHIASAEGDEALVKYF 127
                         AA                          TALH A+    + +V+  
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 128 YGAKANASITDHQDRTPMHLAAENGHASIIELL 160
               A+        +T   ++ +NG+  + E+L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 30/176 (17%)

Query: 52  EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTA 111
           +    L  A+  G +  V+      A  +                           G + 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWL-----------------------GTSP 37

Query: 112 LHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFER 171
           LH+A+  G  +  +    A  +       DRTP+H+AA  GHA+I+E+   K  A +  +
Sbjct: 38  LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV-LLKHGADVNAK 96

Query: 172 TKENYNVLHLAAMYSREDVVKLL------LNKKGIENYNVLHLAAMYSREDVVKLL 221
                  LH A  ++ ++VV+LL      ++ +         ++     ED+ ++L
Sbjct: 97  DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (139), Expect = 3e-11
 Identities = 25/153 (16%), Positives = 42/153 (27%), Gaps = 11/153 (7%)

Query: 22  TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY---------- 71
             L  AA + DL+ +  L+    +V+ QNG G+TAL +      E   +           
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 72  -FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGA 130
              G            +             N             A       +       
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADK 163
            +N    +H+  T   LA   G   ++ L+   
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 2e-06
 Identities = 21/170 (12%), Positives = 35/170 (20%), Gaps = 17/170 (10%)

Query: 55  TALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHI 114
             L  A+A GD   +        N +  +  G          +      L+  G      
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 115 ASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE 174
                         G                                D           +
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNI--------------EDNEGNLPLHLAAK 108

Query: 175 NYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNK 224
             ++  +  +           N KG        LA +Y R +VV L+   
Sbjct: 109 EGHLRVVEFLVKHTASNVGHRNHKG---DTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 12  QLKATTINGDTALHLAARKRDLDMVRILVDYG 43
            +      GDTA  LA      ++V ++   G
Sbjct: 125 NVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-10
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 12/152 (7%)

Query: 20  GDTALHLAARKRDLDMVRILVD-YGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
               L  AA + D+  VR L+       D  N  G+TAL +         ++      + 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 79  ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEAL----------VKYFY 128
                        AA    +    +L+  G   +++    G   +          V  F 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 129 GAKANASITDHQDRTPMHLAAENGHASIIELL 160
            A+++    D +  TP+ LA + G   ++++L
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 13  LKATTINGDTALHLAARKRDLDMVRILVD 41
           L      G T L LA ++   D+V IL  
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (121), Expect = 1e-08
 Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 33/169 (19%)

Query: 22  TALHLAARKRDLDMVRILVDYGTSVDIQ------NGEGQTALHIASAEGDEA---LVKYF 72
            +L  A + RD+  +      G  +  +      +   +TALH+A    D     +V + 
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 73  YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
                N      +G                         LH      +   +K     KA
Sbjct: 68  VQNSGNLDKQTGKGSTA----------------------LHYCCLTDNAECLKLLLRGKA 105

Query: 133 NASITDHQDRTPMHLAAENGHASIIELL--ADKFRASIFERTKENYNVL 179
           +  I +    TP+ +A    H    ELL  A   R +     +  + +L
Sbjct: 106 SIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWRLL 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 24/152 (15%), Positives = 43/152 (28%), Gaps = 20/152 (13%)

Query: 50  NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQ 109
                 +L  A    D   +   Y    + +         +                  +
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHE----------------PDE 46

Query: 110 TALHIASAEGDEA---LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
           TALH+A    D     +V +      N      +  T +H      +A  ++L   + +A
Sbjct: 47  TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL-LLRGKA 105

Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLLNKK 198
           SI    +     L +A     E   +LL    
Sbjct: 106 SIEIANESGETPLDIAKRLKHEHCEELLTQAL 137

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 18/130 (13%), Positives = 31/130 (23%), Gaps = 14/130 (10%)

Query: 110 TALHIASAEGDEALVKYFYGAKAN------ASITDHQDRTPMHLAAEN---GHASIIELL 160
            +L  A    D   +   Y    +       +     D T +HLA  +       I++ L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 161 AD-----KFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSRE 215
                    +            +   A         K  +          L +A     E
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 127

Query: 216 DVVKLLLNKK 225
              +LL    
Sbjct: 128 HCEELLTQAL 137

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 9e-04
 Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 25/118 (21%)

Query: 19  NGDTALHLAARKRD---LDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
             +TALHLA R  D   L +V  LV    ++D Q G+G TALH      +   +K     
Sbjct: 44  PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 103

Query: 76  KANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
           KA+  I +                        G+T L IA     E   +    A + 
Sbjct: 104 KASIEIANE----------------------SGETPLDIAKRLKHEHCEELLTQALSG 139

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 2e-06
 Identities = 16/121 (13%), Positives = 30/121 (24%), Gaps = 5/121 (4%)

Query: 108 GQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLA---AENGHASIIELLAD 162
               L  A+A G    V+     GA  NA  +  +    + +           +     +
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 163 KFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLL 222
               +   R   +                   L+ +       + LA      DV + L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 223 N 223
            
Sbjct: 123 A 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 3e-06
 Identities = 25/119 (21%), Positives = 36/119 (30%), Gaps = 11/119 (9%)

Query: 53  GQTALHIASAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQT 110
               L  A+A G    V+     GA  NA  +  +   + +      V    LL G    
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 111 ALHIASAEGDEALVKYF---------YGAKANASITDHQDRTPMHLAAENGHASIIELL 160
               A+                    + A A   + D   R P+ LA E GH  +   L
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 14/126 (11%)

Query: 22  TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
             L  ++ + + D+V+ ++       + N EG TALH A   G   +VK+      N + 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 82  TDHQG--------------IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF 127
            D  G              + + +  +G +V A      +          EG     ++ 
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 128 YGAKAN 133
           YG +  
Sbjct: 123 YGVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 8/124 (6%)

Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
             L  +S EG+  LV+       + S+ + +  T +H A   GH  I++ L         
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 170 ERTKENYNVLHLAAMYSREDVVKLL--------LNKKGIENYNVLHLAAMYSREDVVKLL 221
             +     +   A+  + +    L+        +    ++                 + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 222 LNKK 225
              +
Sbjct: 123 YGVQ 126

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 16/117 (13%), Positives = 31/117 (26%), Gaps = 11/117 (9%)

Query: 20  GDTALHLAARKRDLDMVRILVD-----------YGTSVDIQNGEGQTALHIASAEGDEAL 68
            D     A +  DLD V+  V                +      GQ  +          +
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 69  VKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK 125
                          ++G    +    +      +   +G TAL     +  +AL++
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALLQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-45  Score=310.56  Aligned_cols=300  Identities=23%  Similarity=0.308  Sum_probs=219.5

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcc
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI   81 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~   81 (315)
                      +++|++++ .++|.+|.+|.||||+||..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+..+.+...
T Consensus        16 v~~Ll~~g-~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~   94 (408)
T d1n11a_          16 VKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL   94 (408)
T ss_dssp             HHHHHHTT-CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcccc
Confidence            57777775 46999999999999999999999999999999999999999999999999999999999999988776554


Q ss_pred             ccccchhhHHHhhhhhhHH-----------hhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHH
Q psy12892         82 TDHQGIQRDIAAAGTSVLA-----------NCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAE  150 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~  150 (315)
                      ...................           ....+..+.++++.|+..++.+++++|++.+.+++..+..|.+||++|+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~  174 (408)
T d1n11a_          95 ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH  174 (408)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHH
T ss_pred             ccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHH
Confidence            4433322211111110000           00112345666777777777777777777777766666666777777777


Q ss_pred             cCCHHHHHHHHHhcCccccccccC---------------------------------CccHHHHHHHcCcHHHHHHHHhc
Q psy12892        151 NGHASIIELLADKFRASIFERTKE---------------------------------NYNVLHLAAMYSREDVVKLLLNK  197 (315)
Q Consensus       151 ~~~~~~~~~Ll~~~~~~~~~~~~~---------------------------------~~~~l~~a~~~~~~~~~~~Ll~~  197 (315)
                      .|+.+++++|+++ |++++..+..                                 +.||++.|+..+..++++++++.
T Consensus       175 ~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~  253 (408)
T d1n11a_         175 HNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK  253 (408)
T ss_dssp             TTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cCCHHHHHHHHhc-CCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhcc
Confidence            7777777777664 5555544444                                 44556666666666666666554


Q ss_pred             C------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhh-----------hhhHH-----H
Q psy12892        198 K------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQ-----------AYLYQ-----V  255 (315)
Q Consensus       198 ~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-----~  255 (315)
                      +      +..|.+|++.|+..++.+++++|++ .|++++..+...        .++++           ..+.+     +
T Consensus       254 ~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~-~g~~~~~~~~~~--------~t~L~~~~~~~~~~~~~~ll~~g~~in  324 (408)
T d1n11a_         254 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMG--------YTPLHVASHYGNIKLVKFLLQHQADVN  324 (408)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCSSC--------CCHHHHHHHSSCSHHHHHHHHTTCCTT
T ss_pred             ccccccccCCCCChhhhhhhcCcHHHHHHHHH-CCCccccccccc--------cccchhhcccCcceeeeeecccccccc
Confidence            3      5567788888888888999999988 888887765433        23332           12221     1


Q ss_pred             HHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhhhcC
Q psy12892        256 YLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       256 ~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                      .++..|+||||+|++.   |+.++|++|+++|||++.+|.+|.|||++|++.|+.++|++
T Consensus       325 ~~d~~G~T~Lh~A~~~---g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~  381 (408)
T d1n11a_         325 AKTKLGYSPLHQAAQQ---GHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDV  381 (408)
T ss_dssp             CCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred             ccCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            4567899999999999   99999999999999999999999999999999999999873

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-41  Score=267.97  Aligned_cols=225  Identities=24%  Similarity=0.325  Sum_probs=181.8

Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHHcCCc---ccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhH
Q psy12892         14 KATTINGDTALHLAARKRDLDMVRILVDYGTS---VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRD   90 (315)
Q Consensus        14 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~   90 (315)
                      +-.+.+|.||||+||+.|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|+++|++++..+.      
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~------   76 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER------   76 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT------
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccccccc------
Confidence            44688999999999999999999999999987   667889999999999999999999999999999998876      


Q ss_pred             HHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCC----------CCCc---HHHHHHHcCCHHHH
Q psy12892         91 IAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDH----------QDRT---PMHLAAENGHASII  157 (315)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~----------~~~~---~l~~a~~~~~~~~~  157 (315)
                                      .|.|||++|+..++.+++++|++.+........          ....   ++............
T Consensus        77 ----------------~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (255)
T d1oy3d_          77 ----------------GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE  140 (255)
T ss_dssp             ----------------TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------------------
T ss_pred             ----------------ccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHH
Confidence                            789999999999999999999977654322110          0111   11111111112222


Q ss_pred             HHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC-------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccc
Q psy12892        158 ELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK-------GIENYNVLHLAAMYSREDVVKLLLNKKGINVA  230 (315)
Q Consensus       158 ~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~  230 (315)
                      ..+....+..++..+..|.||||+|+..++.+++++|++.+       +..|.||||+|+..++.+++++|++ +|++++
T Consensus       141 ~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~-~gadin  219 (255)
T d1oy3d_         141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPT  219 (255)
T ss_dssp             ---CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTT
T ss_pred             HHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHH-CCCCCC
Confidence            22333346777888999999999999999999999999765       5568999999999999999999999 999999


Q ss_pred             cCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccc
Q psy12892        231 ALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGR  289 (315)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~  289 (315)
                      .+                         +..|+||||+|+..   ++.+++++|+++||+
T Consensus       220 ~~-------------------------d~~g~t~L~~A~~~---~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         220 AR-------------------------MYGGRTPLGSALLR---PNPILARLLRAHGAP  250 (255)
T ss_dssp             CC-------------------------CTTSCCHHHHHHTS---SCHHHHHHHHHTTCC
T ss_pred             CC-------------------------CCCCCCHHHHHHHC---CCHHHHHHHHHcCCC
Confidence            85                         67899999999999   999999999999996

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-39  Score=275.89  Aligned_cols=268  Identities=28%  Similarity=0.320  Sum_probs=221.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHH
Q psy12892         21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLA  100 (315)
Q Consensus        21 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
                      .||||.||..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+.                
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~----------------   64 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK----------------   64 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT----------------
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC----------------
Confidence            4999999999999999999999999999999999999999999999999999999999998876                


Q ss_pred             hhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCc---------------------------------ccCCCCCCcHHHH
Q psy12892        101 NCLLMGEGQTALHIASAEGDEALVKYFYGAKANA---------------------------------SITDHQDRTPMHL  147 (315)
Q Consensus       101 ~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~---------------------------------~~~~~~~~~~l~~  147 (315)
                            .|.|||++|+..|+.+++++|+..+.++                                 ...+..+.++++.
T Consensus        65 ------~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  138 (408)
T d1n11a_          65 ------DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV  138 (408)
T ss_dssp             ------TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             ------CCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHH
Confidence                  7899999999999999999988654432                                 3345678899999


Q ss_pred             HHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC-----------------------------
Q psy12892        148 AAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK-----------------------------  198 (315)
Q Consensus       148 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-----------------------------  198 (315)
                      |+..++.+++++|++. +.+++..+.++.+||+.|+..++.+++++|++++                             
T Consensus       139 a~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l  217 (408)
T d1n11a_         139 AAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL  217 (408)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHc-CCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhh
Confidence            9999999999999996 9999999999999999999999999999999765                             


Q ss_pred             ----------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCc---cccchhhhhhHHH-----HHhhh
Q psy12892        199 ----------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPD---LTVGPVQAYLYQV-----YLISK  260 (315)
Q Consensus       199 ----------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~  260 (315)
                                +..+.||++.|+..++.+++++++. .+...+..+..+.+....   .....+..++.+.     ..+..
T Consensus       218 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~  296 (408)
T d1n11a_         218 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM  296 (408)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSS
T ss_pred             hhccccccccCCCCCCHHHHHHHhCcHhHhhhhhc-cccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcccccccc
Confidence                      3345677777777777777777777 666666554333221000   0011222333322     22346


Q ss_pred             cCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhhhcC
Q psy12892        261 QQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       261 ~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                      +.||||.++..   ++.++++++++.|++++.+|.+|.||||+|+++|+.++|++
T Consensus       297 ~~t~L~~~~~~---~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~  348 (408)
T d1n11a_         297 GYTPLHVASHY---GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL  348 (408)
T ss_dssp             CCCHHHHHHHS---SCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccccchhhccc---CcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            78999999999   99999999999999999999999999999999999999874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-38  Score=245.65  Aligned_cols=213  Identities=22%  Similarity=0.310  Sum_probs=197.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHH-HcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhh
Q psy12892         20 GDTALHLAARKRDLDMVRILV-DYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSV   98 (315)
Q Consensus        20 g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   98 (315)
                      +.++|+.+|..|+++.++.++ +.+.+++..|..|+||||+|+..|+.+++++|++.+........              
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~--------------   68 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD--------------   68 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCT--------------
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccc--------------
Confidence            468999999999999997776 55678999999999999999999999999999999888776665              


Q ss_pred             HHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccH
Q psy12892         99 LANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNV  178 (315)
Q Consensus        99 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  178 (315)
                              .+.++++.++..++.+++++|++.+.+++..+..|.||||+|+..|+.+++++|++. |++++..+..+.||
T Consensus        69 --------~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~-g~d~~~~~~~~~t~  139 (223)
T d1uoha_          69 --------AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATA  139 (223)
T ss_dssp             --------TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCH
T ss_pred             --------cccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcc
Confidence                    678999999999999999999999999999999999999999999999999999986 99999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhh
Q psy12892        179 LHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYL  252 (315)
Q Consensus       179 l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (315)
                      ||+|+..++.+++++|.+.+      +..|.||||.|+..++.+++++|++ .|++++.+                    
T Consensus       140 L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~-~Gad~~~~--------------------  198 (223)
T d1uoha_         140 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIE--------------------  198 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCC--------------------
T ss_pred             chhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHH-CCCCCCCC--------------------
Confidence            99999999999999998776      7789999999999999999999999 99999985                    


Q ss_pred             HHHHHhhhcCCcceeeeccCCCCcHHHHHHHHh
Q psy12892        253 YQVYLISKQQTAVHLVCSRQTGTATSILRALLS  285 (315)
Q Consensus       253 ~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~  285 (315)
                           +..|+||||+| ..   ++.+++++|++
T Consensus       199 -----d~~g~tpl~~A-~~---~~~~i~~~Ll~  222 (223)
T d1uoha_         199 -----NKEEKTPLQVA-KG---GLGLILKRMVE  222 (223)
T ss_dssp             -----CTTSCCHHHHC-CT---THHHHHHHHHC
T ss_pred             -----CCCCCCHHHHH-HC---CCHHHHhcccC
Confidence                 78899999998 46   89999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-38  Score=245.79  Aligned_cols=218  Identities=21%  Similarity=0.247  Sum_probs=196.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHc-CCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhH
Q psy12892         21 DTALHLAARKRDLDMVRILVDY-GTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVL   99 (315)
Q Consensus        21 ~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (315)
                      .||||+||..|+.++++.|++. +.+++.+|.+|.||||+|+..|+.+++++|+++|++++..+...             
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~-------------   67 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD-------------   67 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCC-------------
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccc-------------
Confidence            4899999999999999999875 57889999999999999999999999999999999987655432             


Q ss_pred             HhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcc--cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCcc
Q psy12892        100 ANCLLMGEGQTALHIASAEGDEALVKYFYGAKANAS--ITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYN  177 (315)
Q Consensus       100 ~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  177 (315)
                            ..|.+|+++++..+..++++.++..+...+  ..+..+.++++.++..++.+++++|++. +...+..+..|+|
T Consensus        68 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t  140 (229)
T d1ixva_          68 ------DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQI  140 (229)
T ss_dssp             ------TTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCC
T ss_pred             ------ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhh-cccccccCCCCCC
Confidence                  278899999999999999999998876543  4567888999999999999999999996 8999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcC-------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhh
Q psy12892        178 VLHLAAMYSREDVVKLLLNKK-------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQA  250 (315)
Q Consensus       178 ~l~~a~~~~~~~~~~~Ll~~~-------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (315)
                      |||+|+..++.+++++|++.+       +..|.||||+|+.+++.+++++|+++.|++++.+                  
T Consensus       141 ~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~------------------  202 (229)
T d1ixva_         141 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV------------------  202 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCC------------------
T ss_pred             ccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCc------------------
Confidence            999999999999999999865       5679999999999999999999998679999985                  


Q ss_pred             hhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccc
Q psy12892        251 YLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGR  289 (315)
Q Consensus       251 ~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~  289 (315)
                             +..|+||||+|+..      +++++|+++|+|
T Consensus       203 -------d~~g~t~l~~A~~~------~~~~~Ll~~g~d  228 (229)
T d1ixva_         203 -------DNKGAKAEDVALNE------QVKKFFLNNVVD  228 (229)
T ss_dssp             -------CTTSCCTGGGCSCH------HHHHHHHHHCCC
T ss_pred             -------CCCCCCHHHHHhhH------HHHHHHHHcCCC
Confidence                   67899999999866      799999999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=5e-40  Score=266.24  Aligned_cols=231  Identities=21%  Similarity=0.270  Sum_probs=199.0

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhh
Q psy12892         18 INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTS   97 (315)
Q Consensus        18 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~   97 (315)
                      ..|.|+|+.||..|++++|++|+++|++++..|.+|.||||+|+..|+.+++++|++++++......             
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~-------------  104 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN-------------  104 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------------
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccc-------------
Confidence            4567999999999999999999999999999999999999999999999999999999998777665             


Q ss_pred             hHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCcc
Q psy12892         98 VLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYN  177 (315)
Q Consensus        98 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  177 (315)
                               .+.+||+.|+..++.+++++|++.+...+..+..+.+++++|+..+..+.++.++...+.++.........
T Consensus       105 ---------~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  175 (291)
T d1s70b_         105 ---------EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER  175 (291)
T ss_dssp             ---------TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             ---------cccccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccc
Confidence                     68899999999999999999999999999999999999999999999999999998655544332221111


Q ss_pred             HHHHHHHcCcHHHHHHHHh------cCCCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhh
Q psy12892        178 VLHLAAMYSREDVVKLLLN------KKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAY  251 (315)
Q Consensus       178 ~l~~a~~~~~~~~~~~Ll~------~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (315)
                      +..       ......+..      .....|.||||.|+..++.+++++|++ .|++++..                   
T Consensus       176 ~~~-------~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~-------------------  228 (291)
T d1s70b_         176 IML-------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIK-------------------  228 (291)
T ss_dssp             HHH-------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCC-------------------
T ss_pred             ccc-------ccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccc-ceeccccc-------------------
Confidence            111       111122221      126678999999999999999999999 99999884                   


Q ss_pred             hHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeec
Q psy12892        252 LYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGK  306 (315)
Q Consensus       252 ~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~  306 (315)
                            +..|+||||+|+..   |+.++|++|+++|+|++.+|..|+|||++|++
T Consensus       229 ------~~~g~TpL~~A~~~---g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         229 ------DYDGWTPLHAAAHW---GKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             ------CTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             ------ccCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence                  67799999999999   99999999999999999999999999999987

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=250.22  Aligned_cols=249  Identities=24%  Similarity=0.251  Sum_probs=206.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCcccccC-CCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhh
Q psy12892         19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQN-GEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTS   97 (315)
Q Consensus        19 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~   97 (315)
                      ++.|+||.|++.|++++|++|+++|++++.++ ..|.||||+|+..|+.+++++|++.+.....................
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            56899999999999999999999999998765 46999999999999999999999999887766654433222211110


Q ss_pred             --h---------HHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccC----------CCCCCcHHHHHHHcCCHHH
Q psy12892         98 --V---------LANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT----------DHQDRTPMHLAAENGHASI  156 (315)
Q Consensus        98 --~---------~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~  156 (315)
                        .         ......+..+.++++.|+..+....+..++....+++..          ...|.||||+|+..|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence              0         011112346789999999999999999998876665433          4468899999999999999


Q ss_pred             HHHHHHhcCccccccccCCccHHHHHHHc----CcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHhccC
Q psy12892        157 IELLADKFRASIFERTKENYNVLHLAAMY----SREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLNKKG  226 (315)
Q Consensus       157 ~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~----~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~  226 (315)
                      +++|+++.+++++..+..+.++...+...    +..+++++|++++      +..|.||||.|+..++.+++++|++..|
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g  243 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  243 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCC
Confidence            99999988999999999998888766543    3567899999876      6678999999999999999999998679


Q ss_pred             CccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeecc
Q psy12892        227 INVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTV  295 (315)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~  295 (315)
                      ++++.+                         +..|+||||+|++.   ++.+++++|+++|||+|.+|.
T Consensus       244 ~din~~-------------------------d~~G~TpL~~A~~~---~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         244 IEINDT-------------------------DSDGKTALLLAVEL---KLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CCTTCC-------------------------CTTSCCHHHHHHHT---TCHHHHHHHHHHSSCSCCSSC
T ss_pred             CCCcCC-------------------------CCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCcccC
Confidence            999985                         67899999999999   999999999999999998874

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.3e-40  Score=265.41  Aligned_cols=244  Identities=18%  Similarity=0.244  Sum_probs=206.8

Q ss_pred             CcHHHHHHH-cCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHH--------HhccCCCccccccchhhHH
Q psy12892         21 DTALHLAAR-KRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--------YGAKANASITDHQGIQRDI   91 (315)
Q Consensus        21 ~t~L~~A~~-~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L--------l~~~~~~~~~~~~~~~~~~   91 (315)
                      .||||+++. .|+.++++.|.+.++++.. +..|+||||+|+..|+.+++++|        ++.|++++..+.       
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~-------   72 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC-------   72 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT-------
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCC-------
Confidence            478887666 4677777777787777643 24699999999999999988776        467899998876       


Q ss_pred             HhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhc--Ccccc
Q psy12892         92 AAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKF--RASIF  169 (315)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~--~~~~~  169 (315)
                                     .|.||||+|+..|+.+++++|++.|++++..+..|.||+++|+..++.++++++....  ...++
T Consensus        73 ---------------~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~  137 (277)
T d2fo1e1          73 ---------------DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE  137 (277)
T ss_dssp             ---------------TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS
T ss_pred             ---------------CCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhccccccccc
Confidence                           7999999999999999999999999999999999999999999999999999887642  13455


Q ss_pred             ccccCCccHHHHHHHcCcHH---HHHHHHhcC--------------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccC
Q psy12892        170 ERTKENYNVLHLAAMYSRED---VVKLLLNKK--------------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAAL  232 (315)
Q Consensus       170 ~~~~~~~~~l~~a~~~~~~~---~~~~Ll~~~--------------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  232 (315)
                      ..+....++.+.+...+..+   .+..+.+..              +..|.||||.++..++.+++++++...+.+.+..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~  217 (277)
T d2fo1e1         138 ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ  217 (277)
T ss_dssp             CCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCC
T ss_pred             ccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccccccccccc
Confidence            66777888999888877543   333333322              5568899999999999999998887688888774


Q ss_pred             CCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhh
Q psy12892        233 GGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQI  312 (315)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  312 (315)
                                               +..|+||||+|++.   |+.+++++|+++|+|++.+|.+|.|||++|+++|+.+|
T Consensus       218 -------------------------d~~g~tpL~~A~~~---g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~i  269 (277)
T d2fo1e1         218 -------------------------DEDGKTPIMLAAQE---GRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNI  269 (277)
T ss_dssp             -------------------------CTTCCCHHHHHHHH---TCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHH
T ss_pred             -------------------------CCCCCCHHHHHHHc---CCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence                                     67899999999999   99999999999999999999999999999999999999


Q ss_pred             hcC
Q psy12892        313 EEL  315 (315)
Q Consensus       313 ~~l  315 (315)
                      +++
T Consensus       270 v~l  272 (277)
T d2fo1e1         270 VDI  272 (277)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            974

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.2e-39  Score=254.43  Aligned_cols=219  Identities=23%  Similarity=0.284  Sum_probs=173.1

Q ss_pred             cCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHH
Q psy12892         49 QNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFY  128 (315)
Q Consensus        49 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll  128 (315)
                      .+.+|.||||+|+..|+.+++++|+++|+++...+...                   ..|.||||+|+..|+.+++++|+
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~-------------------~~g~TpL~~A~~~g~~~iv~~Ll   65 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQN-------------------DLGQTALHLAAILGEASTVEKLY   65 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCC-------------------TTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcC-------------------CCCCCccchHHhhcccccccccc
Confidence            57899999999999999999999999999865444321                   17899999999999999999999


Q ss_pred             hCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccc-cc---------CCccH---HHHHHHcCcHHHHHH--
Q psy12892        129 GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFER-TK---------ENYNV---LHLAAMYSREDVVKL--  193 (315)
Q Consensus       129 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~---------~~~~~---l~~a~~~~~~~~~~~--  193 (315)
                      +.|++++..+..|.|||++|+..++.+++++|++. ....... ..         ...+.   +..............  
T Consensus        66 ~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (255)
T d1oy3d_          66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD  144 (255)
T ss_dssp             HTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSS-CCSSCCCC-----------------------------------C
T ss_pred             cccccccccccccchhhhhhhccCchHHHHHHHhh-ccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHh
Confidence            99999999999999999999999999999999985 3221110 00         00000   111111100111111  


Q ss_pred             -----HHhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceee
Q psy12892        194 -----LLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLV  268 (315)
Q Consensus       194 -----Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A  268 (315)
                           .++..+..|.||||+|+..++.+++++|++ .+.+.+..                        .+..|.||||+|
T Consensus       145 ~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~-~~~~~~~~------------------------~~~~g~TpL~~A  199 (255)
T d1oy3d_         145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-AGADLNKP------------------------EPTCGRTPLHLA  199 (255)
T ss_dssp             CCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCC------------------------CTTTCCCHHHHH
T ss_pred             hhcCcccccccccCcccccccccccccccccchhc-cccccccc------------------------cccccccccccc
Confidence                 112337789999999999999999999999 88888764                        267899999999


Q ss_pred             eccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhhhcC
Q psy12892        269 CSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       269 ~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                      ++.   ++.+++++|+++|+|++.+|..|.|||++|+++|+.+++++
T Consensus       200 ~~~---~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~  243 (255)
T d1oy3d_         200 VEA---QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL  243 (255)
T ss_dssp             HHT---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred             ccc---cHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence            999   99999999999999999999999999999999999999874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-36  Score=234.00  Aligned_cols=196  Identities=27%  Similarity=0.348  Sum_probs=183.5

Q ss_pred             HhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcccc
Q psy12892          4 LLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITD   83 (315)
Q Consensus         4 ~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~   83 (315)
                      .++...+.+++.+|..|.||||+||..|+.+++++|++.+.+....+..+.++++.|+..++.+++++|++++++++..+
T Consensus        21 ~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d  100 (223)
T d1uoha_          21 ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN  100 (223)
T ss_dssp             HHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeC
Confidence            34444566799999999999999999999999999999999998888999999999999999999999999999998877


Q ss_pred             ccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q psy12892         84 HQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK  163 (315)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  163 (315)
                      .                      .|.||||+|+..++.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.
T Consensus       101 ~----------------------~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_         101 Q----------------------NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             T----------------------TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             C----------------------CCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            6                      789999999999999999999999999999999999999999999999999999985


Q ss_pred             cCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHHHHHHcCCHHHHHHHHh
Q psy12892        164 FRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLHLAAMYSREDVVKLLLN  223 (315)
Q Consensus       164 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~~A~~~~~~~~~~~Ll~  223 (315)
                       +.+++..+.+|+||||+|+..|+.+++++|++.|      +..|.||||+| ..++.+++++|++
T Consensus       159 -~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         159 -KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             -TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             -cceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence             9999999999999999999999999999999887      77899999998 5799999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.6e-35  Score=237.75  Aligned_cols=223  Identities=24%  Similarity=0.289  Sum_probs=188.3

Q ss_pred             ccccc-cCCCcHHHHHHHcCCHHHHHHH--------HHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcccc
Q psy12892         13 LKATT-INGDTALHLAARKRDLDMVRIL--------VDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITD   83 (315)
Q Consensus        13 ~~~~~-~~g~t~L~~A~~~~~~~~v~~L--------l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~   83 (315)
                      +|..+ .+|+||||+||..|+.++|++|        ++.|+|++.+|.+|.||||+|+..|+.+++++|+++|++++..+
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~  104 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN  104 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccccc
Confidence            44455 4699999999999999998876        56799999999999999999999999999999999999999887


Q ss_pred             ccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCC---CCcccCCCCCCcHHHHHHHcCCHH---HH
Q psy12892         84 HQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK---ANASITDHQDRTPMHLAAENGHAS---II  157 (315)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~~~~l~~a~~~~~~~---~~  157 (315)
                      .                      .|.||++.|+..++.++++++...+   ..++..+..+.++.+.+...+..+   .+
T Consensus       105 ~----------------------~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (277)
T d2fo1e1         105 K----------------------SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASA  162 (277)
T ss_dssp             T----------------------TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHH
T ss_pred             c----------------------cccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccc
Confidence            6                      7999999999999999999987653   345566778889999998877543   44


Q ss_pred             HHHHHhc-------CccccccccCCccHHHHHHHcCcHHHHHHHHhcC-------CCCCCcHHHHHHHcCCHHHHHHHHh
Q psy12892        158 ELLADKF-------RASIFERTKENYNVLHLAAMYSREDVVKLLLNKK-------GIENYNVLHLAAMYSREDVVKLLLN  223 (315)
Q Consensus       158 ~~Ll~~~-------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-------~~~~~~~l~~A~~~~~~~~~~~Ll~  223 (315)
                      ..+.+..       ....+..+..+.|+|++++..++.+++++++...       +..|.||||+|+..|+.+++++|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~  242 (277)
T d2fo1e1         163 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ  242 (277)
T ss_dssp             HHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4444431       1223445667899999999999999999876543       6778999999999999999999999


Q ss_pred             ccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhh
Q psy12892        224 KKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLST  286 (315)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~  286 (315)
                       .|++++.+                         +..|+||||+|++.   |+.+++++|++.
T Consensus       243 -~gadin~~-------------------------d~~G~T~L~~A~~~---~~~~iv~lL~~c  276 (277)
T d2fo1e1         243 -QGASVEAV-------------------------DATDHTARQLAQAN---NHHNIVDIFDRC  276 (277)
T ss_dssp             -TTCCSSCC-------------------------CSSSCCHHHHHHHT---TCHHHHHHHHTT
T ss_pred             -CcCCCCCc-------------------------CCCCCCHHHHHHHc---CCHHHHHHHHHh
Confidence             99999985                         67899999999999   999999999863

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-34  Score=225.18  Aligned_cols=203  Identities=18%  Similarity=0.160  Sum_probs=179.0

Q ss_pred             ChHHHHHHhcCCHHHHHHHHhc-cCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCC
Q psy12892         54 QTALHIASAEGDEALVKYFYGA-KANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA  132 (315)
Q Consensus        54 ~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~  132 (315)
                      .+|||+||..|+.++++.|++. +..++..+.                      .|.||||+|+..|+.+++++|++.|+
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~----------------------~G~TpL~~A~~~g~~~iv~~Ll~~ga   58 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQ----------------------DGRIPLHWSVSFQAHEITSFLLSKME   58 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCT----------------------TSCCHHHHHHHTTCHHHHHHHHTTCT
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCC----------------------CCCCHHHHHHHcCCccccchhhhhhc
Confidence            3799999999999999999875 456666655                      79999999999999999999999999


Q ss_pred             Cccc---CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcc--ccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCC
Q psy12892        133 NASI---TDHQDRTPMHLAAENGHASIIELLADKFRAS--IFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIE  201 (315)
Q Consensus       133 ~~~~---~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~  201 (315)
                      +++.   .+..|.+|+++++..+..++++.++.. +..  ....+..+.++++.++..++.+++++|+..+      +..
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  137 (229)
T d1ixva_          59 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF  137 (229)
T ss_dssp             TCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSS-SSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             cccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhhhhhhhcccccccCCC
Confidence            8764   567889999999999999999998875 543  4445677889999999999999999999876      677


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHH
Q psy12892        202 NYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILR  281 (315)
Q Consensus       202 ~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~  281 (315)
                      |.||||.|+.+++.+++++|++..+.+++.+                         +..|+||||+|+..   ++.++++
T Consensus       138 g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~-------------------------d~~g~TpLh~A~~~---~~~~~v~  189 (229)
T d1ixva_         138 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQ-------------------------DKQGWTPLFHALAE---GHGDAAV  189 (229)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHTTTCCCSCCC-------------------------CTTSCCHHHHHHHT---TCHHHHH
T ss_pred             CCCccchhhhccccccccccccccccccccc-------------------------ccccCCchhhhccc---ccHHHHH
Confidence            8999999999999999999999444677774                         67899999999999   9999999


Q ss_pred             HHHh-hccceeeeccCCceeEEEeecC
Q psy12892        282 ALLS-TAGREIRMTVDGTLILYYRGKD  307 (315)
Q Consensus       282 ~Ll~-~g~~~~~~~~~g~t~l~~A~~~  307 (315)
                      +|++ .|+|++.+|..|.|||++|+..
T Consensus       190 ~Ll~~~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         190 LLVEKYGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             HHHHHHCCCSCCCCTTSCCTGGGCSCH
T ss_pred             HHHHhcCCCCCCcCCCCCCHHHHHhhH
Confidence            9997 5999999999999999999965

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-34  Score=221.82  Aligned_cols=219  Identities=25%  Similarity=0.285  Sum_probs=175.4

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHH----cCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHh
Q psy12892         18 INGDTALHLAARKRDLDMVRILVD----YGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAA   93 (315)
Q Consensus        18 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   93 (315)
                      ++|.||||+||..|+.+++++|++    .|++++..|..|.||||+|+..|+.+++++|+++|++.+....         
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~---------   71 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR---------   71 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccc---------
Confidence            379999999999999999998874    7899999999999999999999999999999999998887665         


Q ss_pred             hhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCC----cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccc
Q psy12892         94 AGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN----ASITDHQDRTPMHLAAENGHASIIELLADKFRASIF  169 (315)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~  169 (315)
                                   .+.++++.|...++.++++.+......    .+.......++++.+...........|... ..+..
T Consensus        72 -------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~  137 (228)
T d1k1aa_          72 -------------HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADID  137 (228)
T ss_dssp             -------------TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTT
T ss_pred             -------------ccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcc-ccccc
Confidence                         677899999999998888877654322    233344556777777777777777766654 22211


Q ss_pred             ccccCCccHHHHHHHcCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhh
Q psy12892        170 ERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQ  249 (315)
Q Consensus       170 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (315)
                      .                          .....+.++++.|+..+..++++++++ .|.+++..                 
T Consensus       138 ~--------------------------~~~~~~~~~l~~a~~~~~~~~~~~~~~-~~~~~~~~-----------------  173 (228)
T d1k1aa_         138 A--------------------------VDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQ-----------------  173 (228)
T ss_dssp             C--------------------------CCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCB-----------------
T ss_pred             c--------------------------ccccchhhHHHHHHHhhhhhhhhhhhh-hccccccc-----------------
Confidence            1                          113456677777777788888888888 78877764                 


Q ss_pred             hhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhhhc
Q psy12892        250 AYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEE  314 (315)
Q Consensus       250 ~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  314 (315)
                              +..|.||||+|+..   |+.+++++|+++|+|++.+|.+|.|||++|+++|+.||||
T Consensus       174 --------d~~g~t~L~~A~~~---g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         174 --------MYSGSSALHSASGR---GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             --------CTTSCBHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             --------cccCcchHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence                    67788999999999   9999999999999999999999999999999999999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-34  Score=232.29  Aligned_cols=238  Identities=22%  Similarity=0.244  Sum_probs=202.8

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCC
Q psy12892         53 GQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA  132 (315)
Q Consensus        53 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~  132 (315)
                      +.|+|+.|+..|+.++|++|+++|++++.....                     .|.||||+|+..|+.+++++|++.+.
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~---------------------~g~tpL~~A~~~~~~eiv~~L~~~~~   63 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE---------------------GGWTPLHNAVQMSREDIVELLLRHGA   63 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT---------------------TCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCC---------------------CCCCHHHHHHHcCCHHHhhhhccccc
Confidence            458999999999999999999999999877654                     69999999999999999999999999


Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC--------------
Q psy12892        133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK--------------  198 (315)
Q Consensus       133 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~--------------  198 (315)
                      .....+..+.+|.+.++..+..+...+.++. ..+....+..+.++++.|+..+....++.++...              
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (285)
T d1wdya_          64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE  142 (285)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHH
T ss_pred             cccccccccchhhHHHhhcCCccccchhhhh-cccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhh
Confidence            9999999999999999999999999999986 6666677888999999999999999998887643              


Q ss_pred             --CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCcc-------ccchhhhhhHHH-----HHhhhcCCc
Q psy12892        199 --GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDL-------TVGPVQAYLYQV-----YLISKQQTA  264 (315)
Q Consensus       199 --~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~t~  264 (315)
                        ...|.||||.|+++++.+++++|+++.|++++..+..+.......       ....+..++.+.     .++..|.||
T Consensus       143 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~  222 (285)
T d1wdya_         143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP  222 (285)
T ss_dssp             HTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             hhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCc
Confidence              556899999999999999999999877999988765554321111       011122333321     346789999


Q ss_pred             ceeeeccCCCCcHHHHHHHHh-hccceeeeccCCceeEEEeecCchhhhhcC
Q psy12892        265 VHLVCSRQTGTATSILRALLS-TAGREIRMTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       265 L~~A~~~~~~~~~~~i~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                      ||+|++.   ++.+++++|++ .|++++.+|.+|.||||+|+++|+.|++++
T Consensus       223 L~~a~~~---~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~  271 (285)
T d1wdya_         223 LILAVEK---KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL  271 (285)
T ss_dssp             HHHHHHT---TCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cchhhhc---CcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999   99999999998 499999999999999999999999999874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-33  Score=216.16  Aligned_cols=197  Identities=24%  Similarity=0.284  Sum_probs=160.3

Q ss_pred             hhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhh
Q psy12892         10 AEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQR   89 (315)
Q Consensus        10 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   89 (315)
                      ..++|.+|.+|.||||+|+..|+.+++++|+++|++++..+..+.++++.|...++.++++.+..............   
T Consensus        30 g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---  106 (228)
T d1k1aa_          30 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR---  106 (228)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC---
T ss_pred             CCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhcccccccccccc---
Confidence            34699999999999999999999999999999999999999999999999999999999998876554332221110   


Q ss_pred             HHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcc-cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccc
Q psy12892         90 DIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANAS-ITDHQDRTPMHLAAENGHASIIELLADKFRASI  168 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~  168 (315)
                                     .....++++.+...........|.....+.. .....+.++++.|+..+...+++++++. +...
T Consensus       107 ---------------~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~-~~~~  170 (228)
T d1k1aa_         107 ---------------NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-GANV  170 (228)
T ss_dssp             ---------------CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred             ---------------ccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhh-cccc
Confidence                           0156789999999999999999987766544 3456788999999999999999999986 7766


Q ss_pred             cccccCCccHHHHHHHcCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchh
Q psy12892        169 FERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPV  248 (315)
Q Consensus       169 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (315)
                      +..+..                           |.||||+|+..|+.+++++|++ .|+|++.+                
T Consensus       171 ~~~d~~---------------------------g~t~L~~A~~~g~~~~v~~Ll~-~Gad~n~~----------------  206 (228)
T d1k1aa_         171 NAQMYS---------------------------GSSALHSASGRGLLPLVRTLVR-SGADSSLK----------------  206 (228)
T ss_dssp             TCBCTT---------------------------SCBHHHHHHHHTCHHHHHHHHH-TTCCTTCC----------------
T ss_pred             cccccc---------------------------CcchHHHHHHcCCHHHHHHHHH-CCCCCCCC----------------
Confidence            655544                           4555666666677888888888 89999884                


Q ss_pred             hhhhHHHHHhhhcCCcceeeeccCCCCcHHHHH
Q psy12892        249 QAYLYQVYLISKQQTAVHLVCSRQTGTATSILR  281 (315)
Q Consensus       249 ~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~  281 (315)
                               +..|+||||+|+++   ++.++||
T Consensus       207 ---------d~~G~TpL~~A~~~---~~~divk  227 (228)
T d1k1aa_         207 ---------NCHNDTPLMVARSR---RVIDILR  227 (228)
T ss_dssp             ---------CTTSCCTTTTCSSH---HHHHHHT
T ss_pred             ---------CCCCCCHHHHHHhC---CCccccC
Confidence                     67899999999999   8888875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=217.42  Aligned_cols=194  Identities=27%  Similarity=0.346  Sum_probs=156.7

Q ss_pred             CCCcHHHHHHHcCCH----HHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhh
Q psy12892         19 NGDTALHLAARKRDL----DMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAA   94 (315)
Q Consensus        19 ~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   94 (315)
                      +|.||||+|+..|+.    ++++++...|++++..|.+|.||||+|+..|+.+++++|+++|++++..+.          
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~----------   70 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF----------   70 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT----------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccc----------
Confidence            589999999999985    555566678999999999999999999999999999999999999888776          


Q ss_pred             hhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcc------cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccc
Q psy12892         95 GTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANAS------ITDHQDRTPMHLAAENGHASIIELLADKFRASI  168 (315)
Q Consensus        95 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~  168 (315)
                                  .|.+||+.|+..++.++++.+++.+....      .....|.||++.|+..++.+++++++.. +..+
T Consensus        71 ------------~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~  137 (221)
T d1iknd_          71 ------------RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADV  137 (221)
T ss_dssp             ------------TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCT
T ss_pred             ------------ccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeeccc-Cccc
Confidence                        78899999999999999999988765432      2344567788888877777777777775 5554


Q ss_pred             cccccCCccHHHHHHHcCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchh
Q psy12892        169 FERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPV  248 (315)
Q Consensus       169 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (315)
                      +..+                          +..|.||||.|+..|+.+++++|++ +|+|++.+                
T Consensus       138 ~~~~--------------------------~~~G~T~L~~A~~~g~~~~v~~Ll~-~gad~~~~----------------  174 (221)
T d1iknd_         138 NAQE--------------------------PCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRV----------------  174 (221)
T ss_dssp             TCCC--------------------------TTTCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCC----------------
T ss_pred             cccc--------------------------ccCCCCccccccccccHHHHHHHHh-cCCccccc----------------
Confidence            4321                          3457888888888899999999998 99999985                


Q ss_pred             hhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccce
Q psy12892        249 QAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGRE  290 (315)
Q Consensus       249 ~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~  290 (315)
                               +..|+||||+|+..   ++.+++++|++.+.+.
T Consensus       175 ---------~~~G~tpl~~A~~~---~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         175 ---------TYQGYSPYQLTWGR---PSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             ---------CTTCCCGGGGCTTS---SCHHHHHHHHTTSCGG
T ss_pred             ---------CCCCCCHHHHHHHC---CCHHHHHHHHHcCCcc
Confidence                     78899999999999   9999999999987653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-34  Score=223.76  Aligned_cols=179  Identities=23%  Similarity=0.274  Sum_probs=160.9

Q ss_pred             CCChHHHHHHhcCCH----HHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHH
Q psy12892        107 EGQTALHIASAEGDE----ALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA  182 (315)
Q Consensus       107 ~~~~~l~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a  182 (315)
                      +|.||||+|+..|+.    ++++.+...+.+++..+..|+||||+|+..|+.+++++|++. |++++..+..|.+|++.+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~-g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccc-cccccccccccccccccc
Confidence            488999999999985    455566678999999999999999999999999999999996 999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcC------------CCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhh
Q psy12892        183 AMYSREDVVKLLLNKK------------GIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQA  250 (315)
Q Consensus       183 ~~~~~~~~~~~Ll~~~------------~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (315)
                      +..++.++++.++..+            ...+.+|||.|+..++.+++++|+. .|..++..+                 
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~-----------------  141 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQE-----------------  141 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCC-----------------
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecc-cCccccccc-----------------
Confidence            9999999999998765            4457899999999999999999999 888888752                 


Q ss_pred             hhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhhhc
Q psy12892        251 YLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEE  314 (315)
Q Consensus       251 ~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  314 (315)
                             +..|+||||+|++.   |+.+++++|+++|+|++.+|..|.|||++|+++++.++++
T Consensus       142 -------~~~G~T~L~~A~~~---g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~  195 (221)
T d1iknd_         142 -------PCNGRTALHLAVDL---QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQ  195 (221)
T ss_dssp             -------TTTCCCHHHHHHHT---TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred             -------ccCCCCcccccccc---ccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHH
Confidence                   56799999999999   9999999999999999999999999999999999999986

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=3e-31  Score=203.80  Aligned_cols=203  Identities=26%  Similarity=0.286  Sum_probs=112.2

Q ss_pred             hhHhhhhchhhccc-cccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCc
Q psy12892          2 WELLSTQTAEQLKA-TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANAS   80 (315)
Q Consensus         2 ~~~l~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~   80 (315)
                      +++|+++++ ++|. .|.+|.||||+||..|+.+++++|++.|++++..+..+.++++.++..++...............
T Consensus         5 v~~Ll~~g~-din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (209)
T d1ot8a_           5 ISDLLAQGA-ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNL   83 (209)
T ss_dssp             HHHHHHHHH-HHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCT
T ss_pred             HHHHHHCCC-CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            445555544 2554 35555555555555555555555555555555555555555555555555555444443332222


Q ss_pred             cccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy12892         81 ITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL  160 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  160 (315)
                      .....                     .+.++.+.+.........+.|...+.+++..+..|.||+++++..+..++++.+
T Consensus        84 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l  142 (209)
T d1ot8a_          84 NARMH---------------------DGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNIL  142 (209)
T ss_dssp             TCCCT---------------------TCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             ccccc---------------------cccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeee
Confidence            11111                     344555555555555555555555555555555555555555555555555555


Q ss_pred             HHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCC
Q psy12892        161 ADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGR  240 (315)
Q Consensus       161 l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  240 (315)
                      ++. +.+++..+                           ..|.||||+|+..|+.+++++|++ .|+|++..        
T Consensus       143 ~~~-~~~~~~~d---------------------------~~g~TpL~~A~~~g~~~~v~~Ll~-~gad~n~~--------  185 (209)
T d1ot8a_         143 LMH-HANRDAQD---------------------------DKDETPLFLAAREGSYEASKALLD-NFANREIT--------  185 (209)
T ss_dssp             HHT-TCCTTCCC---------------------------TTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC--------
T ss_pred             ccc-cccccccc---------------------------cccccccchhccccHHHHHHHHHH-CCCCCCCc--------
Confidence            553 44444444                           445566666666666666666666 66666653        


Q ss_pred             CccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHH
Q psy12892        241 PDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRAL  283 (315)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~L  283 (315)
                                       +..|+||||+|+++   |+.++|++|
T Consensus       186 -----------------d~~g~Tpl~~A~~~---~~~~iv~lL  208 (209)
T d1ot8a_         186 -----------------DHMDRLPRDVASER---LHHDIVRLL  208 (209)
T ss_dssp             -----------------CTTSCCHHHHHHHT---TCHHHHHHH
T ss_pred             -----------------CCCCCCHHHHHHHc---CCHHHHhhc
Confidence                             45566666666666   666666654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=3e-30  Score=198.17  Aligned_cols=169  Identities=26%  Similarity=0.303  Sum_probs=151.8

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCc-ccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCc
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTS-VDIQNGEGQTALHIASAEGDEALVKYFYGAKANAS   80 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~   80 (315)
                      +++|+..+. .++.++..+.++++.++..++............. .......+.++.+.+.........+.|.+.+++++
T Consensus        39 v~~Ll~~g~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~  117 (209)
T d1ot8a_          39 AKRLLDAGA-DANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN  117 (209)
T ss_dssp             HHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTT
T ss_pred             HHHHHhhcc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccc
Confidence            567777665 4899999999999999999999888877766543 33445678899999999999999999999999988


Q ss_pred             cccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy12892         81 ITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL  160 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  160 (315)
                      ..+.                      .|.|||+.++..+..++++.+++.+.+++..+..|.||||+|+..|+.+++++|
T Consensus       118 ~~~~----------------------~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~L  175 (209)
T d1ot8a_         118 AADN----------------------SGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL  175 (209)
T ss_dssp             CBCT----------------------TSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ccCC----------------------CCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHH
Confidence            8765                      788999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccccccccCCccHHHHHHHcCcHHHHHHH
Q psy12892        161 ADKFRASIFERTKENYNVLHLAAMYSREDVVKLL  194 (315)
Q Consensus       161 l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  194 (315)
                      ++. |++++..+..|.||||+|++.|+.++|++|
T Consensus       176 l~~-gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         176 LDN-FANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            996 999999999999999999999999999976

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-30  Score=191.16  Aligned_cols=154  Identities=27%  Similarity=0.437  Sum_probs=145.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHh
Q psy12892         22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLAN  101 (315)
Q Consensus        22 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
                      ++||+||..|++++|++|+++|++++..|..|.||||+|+ .|+.+++++|+++|++++..+.                 
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~-----------------   64 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDR-----------------   64 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCT-----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccc-----------------
Confidence            7999999999999999999999999999999999999886 7899999999999999987776                 


Q ss_pred             hhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHH
Q psy12892        102 CLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHL  181 (315)
Q Consensus       102 ~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~  181 (315)
                           .+.++++.++..+..+.++.+++.+.+++..+..|.+|+++|+..++.+++++|+++.+.+.+.++..|.||||+
T Consensus        65 -----~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~  139 (156)
T d1ihba_          65 -----TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL  139 (156)
T ss_dssp             -----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             -----cCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHH
Confidence                 688999999999999999999999999999999999999999999999999999998666889999999999999


Q ss_pred             HHHcCcHHHHHHHHhcC
Q psy12892        182 AAMYSREDVVKLLLNKK  198 (315)
Q Consensus       182 a~~~~~~~~~~~Ll~~~  198 (315)
                      |+..++.+++++|+++|
T Consensus       140 A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         140 ARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHTTCHHHHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHhcC
Confidence            99999999999999875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.97  E-value=2.7e-34  Score=236.84  Aligned_cols=230  Identities=13%  Similarity=0.065  Sum_probs=172.5

Q ss_pred             hccccccCCCcHHHHHHHcCCHHHHHH---HHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchh
Q psy12892         12 QLKATTINGDTALHLAARKRDLDMVRI---LVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQ   88 (315)
Q Consensus        12 ~~~~~~~~g~t~L~~A~~~~~~~~v~~---Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~   88 (315)
                      +++.++..|.|||++||..|+.+++++   |++.|++++..|..|.||||+|+..|+.++|++|+++|++++..+...  
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~--  159 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA--  159 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH--
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccc--
Confidence            577889999999999999999877765   789999999999999999999999999999999999999987765321  


Q ss_pred             hHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCccc---CCCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q psy12892         89 RDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI---TDHQDRTPMHLAAENGHASIIELLADKFR  165 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~---~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  165 (315)
                                        .|.||||+|+..|+.++|++|++.|.+...   .+..+.||++.|+.+|+.+++++|++. |
T Consensus       160 ------------------~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~-g  220 (346)
T d2ajaa1         160 ------------------ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-P  220 (346)
T ss_dssp             ------------------HHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-H
T ss_pred             ------------------CCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhC-C
Confidence                              478999999999999999999999876532   334566788889999999999999986 7


Q ss_pred             cccccccc-------CCccHHHHHHHcCcHHHHHHHHhcCCC---------------CCCcHHHHHHHcCCHHHHHHHHh
Q psy12892        166 ASIFERTK-------ENYNVLHLAAMYSREDVVKLLLNKKGI---------------ENYNVLHLAAMYSREDVVKLLLN  223 (315)
Q Consensus       166 ~~~~~~~~-------~~~~~l~~a~~~~~~~~~~~Ll~~~~~---------------~~~~~l~~A~~~~~~~~~~~Ll~  223 (315)
                      ++++..+.       .+.+++..+...+..+....+......               .+.++++.|+..+..+++++|++
T Consensus       221 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~  300 (346)
T d2ajaa1         221 VMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS  300 (346)
T ss_dssp             HHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHT
T ss_pred             CCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHh
Confidence            76654322       223445555444444433333322100               12357888888999999999998


Q ss_pred             ccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhh
Q psy12892        224 KKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLST  286 (315)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~  286 (315)
                       .+........ ..                   .+..++||||+|++.   |+.++|++||+.
T Consensus       301 -~~~~~~~~~~-~~-------------------~~~~g~T~LhlA~~~---Gn~e~v~lLL~~  339 (346)
T d2ajaa1         301 -IPGIKALAPT-AT-------------------IPGDANELLRLALRL---GNQGACALLLSI  339 (346)
T ss_dssp             -STTTGGGSSC-CS-------------------STTCCCHHHHHHHHH---TCTTHHHHHTTS
T ss_pred             -CcChhhhccc-cc-------------------CCCCCCcHHHHHHHc---CcHHHHHHHhCC
Confidence             5554322110 00                   245688999999999   999999999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=2.1e-31  Score=215.19  Aligned_cols=233  Identities=20%  Similarity=0.208  Sum_probs=187.8

Q ss_pred             CCHHHHHHHHHcCCccccc---------CCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHh
Q psy12892         31 RDLDMVRILVDYGTSVDIQ---------NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLAN  101 (315)
Q Consensus        31 ~~~~~v~~Ll~~g~~~~~~---------~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
                      ...+.++.+.....+.+..         +..+.|+|+.||..|+.++|++|+++|++++..+.                 
T Consensus         9 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~-----------------   71 (291)
T d1s70b_           9 KRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANV-----------------   71 (291)
T ss_dssp             HHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT-----------------
T ss_pred             hhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCC-----------------
Confidence            3455666666555443311         12345899999999999999999999999998876                 


Q ss_pred             hhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHH
Q psy12892        102 CLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHL  181 (315)
Q Consensus       102 ~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~  181 (315)
                           .|.||||+|+..|+.+++++|++.+.+....+..+.+|++.++..++.+++++|+++ +...+..+..+.+++++
T Consensus        72 -----~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~  145 (291)
T d1s70b_          72 -----DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDI  145 (291)
T ss_dssp             -----TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             -----CCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhccccc-CcccccccccCcccccc
Confidence                 799999999999999999999999999999999999999999999999999999996 88899999999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhhHHHHHhhhc
Q psy12892        182 AAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQ  261 (315)
Q Consensus       182 a~~~~~~~~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (315)
                      |+..+..+.++.++.........................+.. ...+...                         .+..|
T Consensus       146 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------------------~~~~g  199 (291)
T d1s70b_         146 AEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS-GHINDVR-------------------------HAKSG  199 (291)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH-TCCCCCC-------------------------CTTTC
T ss_pred             ccccccchhccccccccccccccccccccccccccchhhhcc-ccccccc-------------------------ccCCC
Confidence            999999999999987653322222111111122233333333 3333332                         25678


Q ss_pred             CCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEeecCchhhhhcC
Q psy12892        262 QTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKAQIEEL  315 (315)
Q Consensus       262 ~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~l  315 (315)
                      .||||.|+..   ++.+++++|+++|+|++.++..|.||||+|++.|+.++|++
T Consensus       200 ~t~L~~a~~~---~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~l  250 (291)
T d1s70b_         200 GTALHVAAAK---GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI  250 (291)
T ss_dssp             CCHHHHHHHH---TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             CChhhHHHHc---CChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999   99999999999999999999999999999999999999974

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.7e-29  Score=181.68  Aligned_cols=151  Identities=26%  Similarity=0.364  Sum_probs=140.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHc-CCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHH
Q psy12892         22 TALHLAARKRDLDMVRILVDY-GTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLA  100 (315)
Q Consensus        22 t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
                      ..|+.||..|++++|++|++. +++++..|..|.||||+|+. ++.+++++|++++.+++....                
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~----------------   66 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDT----------------   66 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCT----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccc----------------
Confidence            459999999999999999976 78999999999999999875 889999999999999888765                


Q ss_pred             hhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHH
Q psy12892        101 NCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLH  180 (315)
Q Consensus       101 ~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~  180 (315)
                            .|.+|++.++..++.++++++++.+++++..+..|.||||+|+..|+.+++++|++  +++++.++.+|+||||
T Consensus        67 ------~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL~  138 (156)
T d1bd8a_          67 ------SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLE  138 (156)
T ss_dssp             ------TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHHH
T ss_pred             ------ccccccccccccccccccccccccccccccccCCCCeeeccccccccccccccccc--cccccccCCCCCCHHH
Confidence                  68899999999999999999999999999999999999999999999999998884  7899999999999999


Q ss_pred             HHHHcCcHHHHHHHHhc
Q psy12892        181 LAAMYSREDVVKLLLNK  197 (315)
Q Consensus       181 ~a~~~~~~~~~~~Ll~~  197 (315)
                      +|+..|+.+++++|+++
T Consensus       139 ~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         139 LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHSCCHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHhh
Confidence            99999999999999874

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=2.3e-33  Score=231.26  Aligned_cols=244  Identities=14%  Similarity=0.110  Sum_probs=170.9

Q ss_pred             HcCCHHHHHHHHHcCCc-----------ccccCCCCChHHHHHHhcCCHHHHHH---HHhccCCCccccccchhhHHHhh
Q psy12892         29 RKRDLDMVRILVDYGTS-----------VDIQNGEGQTALHIASAEGDEALVKY---FYGAKANASITDHQGIQRDIAAA   94 (315)
Q Consensus        29 ~~~~~~~v~~Ll~~g~~-----------~~~~~~~g~t~l~~A~~~~~~~~v~~---Ll~~~~~~~~~~~~~~~~~~~~~   94 (315)
                      ..+..++.+.+...+++           ++.++..|.|||++|+..|+.+++++   |++.|++++..+.          
T Consensus        55 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~----------  124 (346)
T d2ajaa1          55 TKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA----------  124 (346)
T ss_dssp             SSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH----------
T ss_pred             hccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCC----------
Confidence            34445566666544332           34567789999999999999887765   6899999998876          


Q ss_pred             hhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCC--CCCCcHHHHHHHcCCHHHHHHHHHhcCccc---c
Q psy12892         95 GTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD--HQDRTPMHLAAENGHASIIELLADKFRASI---F  169 (315)
Q Consensus        95 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~---~  169 (315)
                                  .|.||||+|+..|+.++|++|++.|++++..+  ..|.||||+|+..|+.+++++|++. +...   +
T Consensus       125 ------------~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~-~~~~~~~~  191 (346)
T d2ajaa1         125 ------------ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL-APTEATAM  191 (346)
T ss_dssp             ------------HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHS-CGGGHHHH
T ss_pred             ------------CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHc-CCcccccc
Confidence                        68899999999999999999999999988765  4588999999999999999999996 6544   3


Q ss_pred             ccccCCccHHHHHHHcCcHHHHHHHHhcCC-------------CCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCC
Q psy12892        170 ERTKENYNVLHLAAMYSREDVVKLLLNKKG-------------IENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGED  236 (315)
Q Consensus       170 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~-------------~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  236 (315)
                      ..+.++.+|++.|+.+|+.+++++|++.+.             ..+.++++.+...+..++...+.. ...+..      
T Consensus       192 ~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-a~~~~~------  264 (346)
T d2ajaa1         192 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKL-SNPDGV------  264 (346)
T ss_dssp             HHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTT-TSSSSC------
T ss_pred             cccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHH-hccccc------
Confidence            334556778888999999999999998761             112233443333333333222222 111110      


Q ss_pred             CCCCCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccce-----eeeccCCceeEEEeecCchhh
Q psy12892        237 LTGRPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGRE-----IRMTVDGTLILYYRGKDSKAQ  311 (315)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~-----~~~~~~g~t~l~~A~~~~~~~  311 (315)
                          .....      -..........++++.|+..   +..+++++|++.|...     +..+.+|.||||+|++.|+.+
T Consensus       265 ----~~~~~------~~~~~~~~~~~~~l~~a~~~---~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e  331 (346)
T d2ajaa1         265 ----FDLVT------KSECLQGFYMLRNLIRRNDE---VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG  331 (346)
T ss_dssp             ----CCCSS------HHHHHHHHHHHHHHHHHCCG---GGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTT
T ss_pred             ----HhHHh------cccccccchhhhHHHHHhcC---ChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHH
Confidence                00000      00011233456789999999   9999999999987643     355568999999999999999


Q ss_pred             hhcC
Q psy12892        312 IEEL  315 (315)
Q Consensus       312 ~~~l  315 (315)
                      ++++
T Consensus       332 ~v~l  335 (346)
T d2ajaa1         332 ACAL  335 (346)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9974

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.4e-28  Score=179.25  Aligned_cols=150  Identities=25%  Similarity=0.354  Sum_probs=139.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHH
Q psy12892         21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLA  100 (315)
Q Consensus        21 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
                      .|||+.||+.|+.++|++|+++|++++ .|..|+||||+|+..++.++++.++...........                
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~----------------   65 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK----------------   65 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT----------------
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccc----------------
Confidence            489999999999999999999999987 689999999999999999999999887776655444                


Q ss_pred             hhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHH
Q psy12892        101 NCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLH  180 (315)
Q Consensus       101 ~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~  180 (315)
                            .+.++++.++...+.++++++...+.+++..+..|.||||+|+..|+.+++++|++. |++++..+.+|.|||+
T Consensus        66 ------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~-gad~~~~d~~g~Tpl~  138 (153)
T d1awcb_          66 ------VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFD  138 (153)
T ss_dssp             ------TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             ------ccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeecccc-ccCCcccCCCCCCHHH
Confidence                  577899999999999999999999999999999999999999999999999999996 9999999999999999


Q ss_pred             HHHHcCcHHHHHHH
Q psy12892        181 LAAMYSREDVVKLL  194 (315)
Q Consensus       181 ~a~~~~~~~~~~~L  194 (315)
                      +|+.+|+.+++++|
T Consensus       139 ~A~~~g~~eiv~lL  152 (153)
T d1awcb_         139 ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHhC
Confidence            99999999999876

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.4e-28  Score=175.88  Aligned_cols=147  Identities=25%  Similarity=0.332  Sum_probs=138.5

Q ss_pred             hHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCc
Q psy12892         55 TALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA  134 (315)
Q Consensus        55 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~  134 (315)
                      ++||+|+..|+.++|++|+++|++++..+.                      .|.||||+|+ .++.+++++|++.++++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~----------------------~g~TpL~~A~-~~~~ei~~~Ll~~~a~~   59 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNG----------------------FGRTALQVMK-LGNPEIARRLLLRGANP   59 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCT----------------------TSCCHHHHCC-SSCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCC----------------------cccccccccc-ccccccccccccccccc
Confidence            899999999999999999999999998876                      7999999875 78999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC-------CCCCCcHHH
Q psy12892        135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK-------GIENYNVLH  207 (315)
Q Consensus       135 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-------~~~~~~~l~  207 (315)
                      +..+..+.++++.++..+..+.++++++. +.+++..+..+.+|+++|+..++.+++++|++++       +..|.||||
T Consensus        60 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~  138 (156)
T d1ihba_          60 DLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD  138 (156)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             ccccccCcccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccCCCCCCHHH
Confidence            99999999999999999999999999985 8999999999999999999999999999999876       566899999


Q ss_pred             HHHHcCCHHHHHHHHhccC
Q psy12892        208 LAAMYSREDVVKLLLNKKG  226 (315)
Q Consensus       208 ~A~~~~~~~~~~~Ll~~~~  226 (315)
                      +|+..++.+++++|++ +|
T Consensus       139 ~A~~~~~~~iv~~Ll~-~G  156 (156)
T d1ihba_         139 LARLYGRNEVVSLMQA-NG  156 (156)
T ss_dssp             HHHHTTCHHHHHHHHH-TC
T ss_pred             HHHHcCCHHHHHHHHh-cC
Confidence            9999999999999998 65

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.4e-28  Score=169.06  Aligned_cols=122  Identities=22%  Similarity=0.274  Sum_probs=108.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhh
Q psy12892         19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSV   98 (315)
Q Consensus        19 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~   98 (315)
                      .+.++||+|+..|++++|++|+++|++++..+..|.||+|+|+ .|+.+++++|+++|++++..+..             
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~-------------   67 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA-------------   67 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTT-------------
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccc-------------
Confidence            4568999999999999999999999999999999999998764 68999999999999998877753             


Q ss_pred             HHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy12892         99 LANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLAD  162 (315)
Q Consensus        99 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  162 (315)
                              .+.+|||+|+..|+.+++++|++.|++++..|..|.||||+|++.|+.+++++|+.
T Consensus        68 --------~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          68 --------TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             --------TCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             --------ccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                    34579999999999999999999999999999999999999999999999999875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-26  Score=168.22  Aligned_cols=138  Identities=23%  Similarity=0.338  Sum_probs=128.2

Q ss_pred             hhHhhhhchhhccccccCCCcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCcc
Q psy12892          2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI   81 (315)
Q Consensus         2 ~~~l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~   81 (315)
                      +++|+.+.+.++|.+|..|.||||+|+ .|+.+++++|++++.+++..+..|.+|++.|+..++.++++++++++++++.
T Consensus        18 vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~   96 (156)
T d1bd8a_          18 VRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV   96 (156)
T ss_dssp             HHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            466777767789999999999999987 5899999999999999999999999999999999999999999999999988


Q ss_pred             ccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy12892         82 TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLA  161 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  161 (315)
                      .+.                      .|.||||+|+..|+.+++++|+ .|++++..+..|.||||+|+..|+.+++++|+
T Consensus        97 ~~~----------------------~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_          97 PDG----------------------TGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             CCT----------------------TSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             ccC----------------------CCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            776                      7899999999999999999887 68899999999999999999999999999999


Q ss_pred             Hh
Q psy12892        162 DK  163 (315)
Q Consensus       162 ~~  163 (315)
                      ++
T Consensus       154 ~h  155 (156)
T d1bd8a_         154 GH  155 (156)
T ss_dssp             TT
T ss_pred             hh
Confidence            86

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=4.6e-25  Score=160.27  Aligned_cols=144  Identities=25%  Similarity=0.358  Sum_probs=134.0

Q ss_pred             ChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCC
Q psy12892         54 QTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN  133 (315)
Q Consensus        54 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~  133 (315)
                      .|||+.|+..|+.++|++|+++|++++. +.                      .|.||||+|+..++.++++.++.....
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~~-~~----------------------~g~t~L~~a~~~~~~~~~~~~~~~~~~   59 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFTT-DW----------------------LGTSPLHLAAQYGHFSTTEVLLRAGVS   59 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCCC-CT----------------------TCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCccc-cc----------------------CCCcccccccccccccccccccccccc
Confidence            3899999999999999999999998763 33                      799999999999999999999998888


Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC------CCCCCcHHH
Q psy12892        134 ASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK------GIENYNVLH  207 (315)
Q Consensus       134 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~------~~~~~~~l~  207 (315)
                      .......+.++++.++...+.++++++.+. +.+.+..+..|.||||+|+..|+.+++++|++.+      +..|.||||
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~  138 (153)
T d1awcb_          60 RDARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD  138 (153)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccccccccccccccccccceeeeccccc-CCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHH
Confidence            888888889999999999999999999986 8999999999999999999999999999999887      778999999


Q ss_pred             HHHHcCCHHHHHHH
Q psy12892        208 LAAMYSREDVVKLL  221 (315)
Q Consensus       208 ~A~~~~~~~~~~~L  221 (315)
                      +|+.+|+.|++++|
T Consensus       139 ~A~~~g~~eiv~lL  152 (153)
T d1awcb_         139 ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHhC
Confidence            99999999999876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2e-27  Score=192.21  Aligned_cols=168  Identities=17%  Similarity=0.165  Sum_probs=108.5

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCH---HHHHHHHHhcCccccccccCCccHHHHHH
Q psy12892        107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHA---SIIELLADKFRASIFERTKENYNVLHLAA  183 (315)
Q Consensus       107 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~---~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~  183 (315)
                      .|.||||+|+..|+.++|++|++.|++++..|..|+||||.|+..++.   ..+..+++.....+...+..|+||||.++
T Consensus       106 ~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~~  185 (301)
T d1sw6a_         106 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII  185 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHHH
Confidence            688888888888888888888888888888888888888888876642   22233333333445667777888888776


Q ss_pred             HcCc----HHHH--------HHHHhcC-------CCCCCcHHHHHHHcCCHHHHHH-----HHhccCCccccCCCCCCCC
Q psy12892        184 MYSR----EDVV--------KLLLNKK-------GIENYNVLHLAAMYSREDVVKL-----LLNKKGINVAALGGEDLTG  239 (315)
Q Consensus       184 ~~~~----~~~~--------~~Ll~~~-------~~~~~~~l~~A~~~~~~~~~~~-----Ll~~~~~~~~~~~~~~~~~  239 (315)
                      ..+.    ..++        .++...+       ...+.++++.+........+..     ++. .  .+|.        
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~in~--------  254 (301)
T d1sw6a_         186 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA-N--MLNA--------  254 (301)
T ss_dssp             HHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH-H--TTTC--------
T ss_pred             HHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh-c--CccC--------
Confidence            5432    2222        2333322       2223333333333222222221     222 1  1333        


Q ss_pred             CCccccchhhhhhHHHHHhhhcCCcceeeeccCCCCcHHHHHHHHhhccceeeeccCCceeEEEee
Q psy12892        240 RPDLTVGPVQAYLYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRG  305 (315)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~i~~Ll~~g~~~~~~~~~g~t~l~~A~  305 (315)
                                       +|..|+||||+|++.   |+.++|++|+++|+|++++|+.|.|||+||+
T Consensus       255 -----------------~D~~G~TpLh~A~~~---g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         255 -----------------QDSNGDTCLNIAARL---GNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             -----------------CCTTSCCHHHHHHHH---CCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             -----------------CCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence                             367899999999999   9999999999999999999999999999997

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.6e-27  Score=164.83  Aligned_cols=106  Identities=24%  Similarity=0.301  Sum_probs=99.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHH
Q psy12892         21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLA  100 (315)
Q Consensus        21 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
                      .|||++|++.|++++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+.                
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~----------------   66 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK----------------   66 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSS----------------
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeeccc----------------
Confidence            4799999999999999999999999999999999999999999999999999999999988776                


Q ss_pred             hhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHH
Q psy12892        101 NCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLA  148 (315)
Q Consensus       101 ~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a  148 (315)
                            .|.||||+|+..|+.+++++|++.|++++..|..|.|||++|
T Consensus        67 ------~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          67 ------HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             ------SCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             ------ccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHH
Confidence                  789999999999999999999999999999999999999887

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.6e-26  Score=159.73  Aligned_cols=120  Identities=23%  Similarity=0.283  Sum_probs=108.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCcccccCCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHh
Q psy12892         22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLAN  101 (315)
Q Consensus        22 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
                      ++|+.||..|++++|++|+++|+|++.+|.+|.||||+|+..|+.+++++|+++|++++..+.                 
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~-----------------   65 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-----------------   65 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccc-----------------
Confidence            689999999999999999999999999999999999999999999999999999999988876                 


Q ss_pred             hhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCC-CCCcHHHHH--HHcCCHHHHHHHHHh
Q psy12892        102 CLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDH-QDRTPMHLA--AENGHASIIELLADK  163 (315)
Q Consensus       102 ~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~~l~~a--~~~~~~~~~~~Ll~~  163 (315)
                           .|+||||+|+.+|+.+++++|++.|++++..+. .+.|+++.+  ++.|+.+++++|++.
T Consensus        66 -----~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          66 -----DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             -----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             -----cCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence                 789999999999999999999999999987764 477876665  567889999999874

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-25  Score=156.56  Aligned_cols=120  Identities=21%  Similarity=0.225  Sum_probs=111.5

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCC
Q psy12892         53 GQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA  132 (315)
Q Consensus        53 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~  132 (315)
                      +.++||+|+..|+.+++++|+++|++++..+.                      .|.||+|.|+ .|+.+++++|++.|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~----------------------~g~t~l~~a~-~g~~~~v~~Ll~~ga   59 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNS----------------------YGRRPIQVMM-MGSARVAELLLLHGA   59 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS----------------------SSCCTTTSSC-TTCHHHHHHHHTTTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccc----------------------cccccccccc-ccccccccccccccc
Confidence            56899999999999999999999999998876                      7899999764 789999999999999


Q ss_pred             CcccCCCCCC-cHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHh
Q psy12892        133 NASITDHQDR-TPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN  196 (315)
Q Consensus       133 ~~~~~~~~~~-~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  196 (315)
                      +++..+..+. +|||+|++.|+.+++++|++. |++++..+..|+||||+|+.+|+.+++++|++
T Consensus        60 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          60 EPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999988776 699999999999999999997 99999999999999999999999999999975

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.5e-25  Score=181.09  Aligned_cols=177  Identities=20%  Similarity=0.240  Sum_probs=120.2

Q ss_pred             cCCccccc-CCCCChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCC
Q psy12892         42 YGTSVDIQ-NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD  120 (315)
Q Consensus        42 ~g~~~~~~-~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~  120 (315)
                      .+.+++.. |..|.||||+|+..|+.++|++|+++|++++..+.                      .|.||||.|+..++
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~----------------------~G~TpL~~A~~~~~  152 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN----------------------MGESCLVKAVKSVN  152 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT----------------------TCCCHHHHHHHSSH
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCc----------------------ccccHHHHhhhccc
Confidence            46677754 88899999999999999999999999999888776                      68899999987654


Q ss_pred             -------HHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCC----HH--------HHHHHHHhcCccccccccCCccHHHH
Q psy12892        121 -------EALVKYFYGAKANASITDHQDRTPMHLAAENGH----AS--------IIELLADKFRASIFERTKENYNVLHL  181 (315)
Q Consensus       121 -------~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~----~~--------~~~~Ll~~~~~~~~~~~~~~~~~l~~  181 (315)
                             .++++++..   .+...+..|+||||+++..+.    ..        ++.++.+..............++++.
T Consensus       153 ~~~~~~~~~ll~~l~~---~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  229 (301)
T d1sw6a_         153 NYDSGTFEALLDYLYP---CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND  229 (301)
T ss_dssp             HHHTTCHHHHHHHHGG---GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------
T ss_pred             chhhhhHHHHHHHHhh---hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHH
Confidence                   245555543   345567788899998876443    22        33444444333333333444444444


Q ss_pred             HHHcCcHH---------HHHHHHhcCCCCCCcHHHHHHHcCCHHHHHHHHhccCCccccCCCCCCCCCCccccchhhhhh
Q psy12892        182 AAMYSRED---------VVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYL  252 (315)
Q Consensus       182 a~~~~~~~---------~~~~Ll~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (315)
                      +.......         .+..+++..+..|+||||+|++.|+.+++++|++ .|++++..                    
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~-~GAd~~~~--------------------  288 (301)
T d1sw6a_         230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIA--------------------  288 (301)
T ss_dssp             ------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCC--------------------
T ss_pred             HHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC--------------------
Confidence            43332222         2233356668899999999999999999999999 99999995                    


Q ss_pred             HHHHHhhhcCCcceeee
Q psy12892        253 YQVYLISKQQTAVHLVC  269 (315)
Q Consensus       253 ~~~~~~~~~~t~L~~A~  269 (315)
                           +..|.|||++|+
T Consensus       289 -----n~~G~Tpl~~A~  300 (301)
T d1sw6a_         289 -----NKSGLRPVDFGA  300 (301)
T ss_dssp             -----CTTSCCGGGGTC
T ss_pred             -----CCCCCCHHHHcC
Confidence                 778999999997

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.5e-25  Score=154.68  Aligned_cols=107  Identities=22%  Similarity=0.288  Sum_probs=101.6

Q ss_pred             ChHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCC
Q psy12892         54 QTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN  133 (315)
Q Consensus        54 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~  133 (315)
                      .|||++|+..|+.+++++|+++|++++..+.                      .|.||||+|+..++.+++++|++.|++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~----------------------~g~t~lh~A~~~~~~~~~~~ll~~g~d   60 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLE----------------------GGRKPLHYAADCGQLEILEFLLLKGAD   60 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSS----------------------SSCCTTHHHHHHSTTTHHHHHHHSSCT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccc----------------------cccccccccccccccccccccccccce
Confidence            3899999999999999999999999998876                      799999999999999999999999999


Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHH
Q psy12892        134 ASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAA  183 (315)
Q Consensus       134 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~  183 (315)
                      ++..+..|.||||+|+..|+.+++++|+++ |++++..+.+|.|||++|.
T Consensus        61 in~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          61 INAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TTCCSSSCSCHHHHHHTTTCCHHHHHHHTT-CCCSSSSSSSTCCCCCTCS
T ss_pred             eeecccccccchhhhhhcCchhhhhhhhcc-cccceeeCCCCCCHHHHHh
Confidence            999999999999999999999999999996 9999999999999999883

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=3.7e-23  Score=148.80  Aligned_cols=119  Identities=24%  Similarity=0.310  Sum_probs=108.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccc------CCCCChHHHHHHhc---CCHHHHHHHHhccCCCccccccchhhHHHh
Q psy12892         23 ALHLAARKRDLDMVRILVDYGTSVDIQ------NGEGQTALHIASAE---GDEALVKYFYGAKANASITDHQGIQRDIAA   93 (315)
Q Consensus        23 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~------~~~g~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   93 (315)
                      .|..|++.+++..+..++..|.+++..      +..|.||||+|+..   ++.+++++|+++|++++..+.         
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~---------   79 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG---------   79 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT---------
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhh---------
Confidence            466788999999999999999887654      67789999999974   678999999999999998876         


Q ss_pred             hhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q psy12892         94 AGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK  163 (315)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  163 (315)
                                   .|.||||+|+..|+.+++++|++.|++++..|..|.||||+|++.|+.+++++|++.
T Consensus        80 -------------~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          80 -------------KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             -------------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             -------------hhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence                         799999999999999999999999999999999999999999999999999999986

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.3e-24  Score=150.58  Aligned_cols=121  Identities=24%  Similarity=0.311  Sum_probs=105.5

Q ss_pred             hHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhcCCHHHHHHHHhCCCCc
Q psy12892         55 TALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA  134 (315)
Q Consensus        55 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~  134 (315)
                      ++|+.|+..|+.+++++|+++|++++..+.                      .|.||||+|+..++.+++++|++.|+++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~----------------------~g~t~Lh~A~~~~~~~~~~~ll~~g~~~   60 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPND----------------------EGITALHNAVCAGHTEIVKFLVQFGVNV   60 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCT----------------------TSCCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccc----------------------cccccccccccccccccccccccccccc
Confidence            678999999999999999999999988876                      7889999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccc-CCccHHHHH--HHcCcHHHHHHHHhcC
Q psy12892        135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTK-ENYNVLHLA--AMYSREDVVKLLLNKK  198 (315)
Q Consensus       135 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~~l~~a--~~~~~~~~~~~Ll~~~  198 (315)
                      +..|..|+||||+|+.+|+.+++++|+++ |++++..+. .+.+++.++  +..|+.+++++|++.+
T Consensus        61 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          61 NAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             ccccccCcccccccchhhHHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999999999999999999999999996 999887764 477776654  5677888888888643

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.8e-21  Score=139.88  Aligned_cols=127  Identities=19%  Similarity=0.142  Sum_probs=109.8

Q ss_pred             hHHHHHHhcCCHHHHHHHHhccCCCccccccchhhHHHhhhhhhHHhhhhccCCChHHHHHHhc---CCHHHHHHHHhCC
Q psy12892         55 TALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE---GDEALVKYFYGAK  131 (315)
Q Consensus        55 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~---~~~~~v~~Ll~~~  131 (315)
                      ..|+.|+..++...+..++..|++++......                ..+..|+||||+|+..   +..+++++|++.|
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~----------------~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g   71 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLA----------------NGHEPDETALHLAVRSVDRTSLHIVDFLVQNS   71 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCS----------------SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcc----------------cCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC
Confidence            35667889999999999999998876542210                0112689999999974   5789999999999


Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccccCCccHHHHHHHcCcHHHHHHHHhcC
Q psy12892        132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK  198 (315)
Q Consensus       132 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  198 (315)
                      ++++.++..|.||||+|+..|+.+++++|+++ |++++..+..|.||||+|+..|+.+++++|++.+
T Consensus        72 adin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          72 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             SCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChhhhhhhhcccccccccccccccccccccc-CccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            99999999999999999999999999999996 9999999999999999999999999999999865