Psyllid ID: psy12908

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKLLT
Secondary Structure (PSIPRED)
cccccccEEEEEEEccccEEEEEEEEccccEEEEEEcccccccccccccHHHHHHHcHHHHHHccccccEEEcccccccEEccccccccccccccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEccccEEEEEEEEccccEEEEEEcccccccccccccHHHHHHHHHHHHHHcccccccEEcccccccEEccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
vdlfsydillvpIHVQKIHWCLTTIDFRKKCLTyydsmagpdrgclnvdlfsydillVPIHVQKIHWCLATIDFRKKCLTyydsmagpdrgclndvpqqqnssdcgvfTSTFAEYLSRNADIFkikqkdmpyYRKKMMAEILSKKLLT
Flexible Loop (DISEMBL)
VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNADIfkikqkdmpyyRKKMMAEilskkllt
Low Complexity Region (SEG)
VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKLLT
Disordered region (IsUnstruct)
**LFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDV*******DCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKM***********
Disordered Region (DISOPRED)
VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKLLT
Disordered Region (DISEMBL)
VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKLLT
Disordered Region (DISPRO)
VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKLLT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKLLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
Q09353	697	Sentrin-specific protease	yes	N/A	0.722	0.153	0.398	2e-21
P59110	640	Sentrin-specific protease	yes	N/A	0.831	0.192	0.379	4e-21
Q9P0U3	644	Sentrin-specific protease	yes	N/A	0.831	0.190	0.392	5e-21
Q5RBB1	645	Sentrin-specific protease	yes	N/A	0.831	0.190	0.392	5e-21
Q5R7K7	589	Sentrin-specific protease	no	N/A	0.662	0.166	0.419	2e-19
Q9HC62	589	Sentrin-specific protease	no	N/A	0.662	0.166	0.419	2e-19
Q91ZX6	588	Sentrin-specific protease	no	N/A	0.864	0.217	0.405	5e-19
Q9EQE1	588	Sentrin-specific protease	no	N/A	0.864	0.217	0.405	5e-19
Q9EP97	568	Sentrin-specific protease	no	N/A	0.844	0.220	0.301	1e-13
Q9H4L4	574	Sentrin-specific protease	no	N/A	0.844	0.217	0.301	2e-13

>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2 SV=3

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/138 (39%), Positives = 77/138 (55%), Gaps = 31/138 (22%)

Query: 39  AGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPD-------RG 91
           A   R    VD+F++DI+LVP+H+  +HWC+A ID  +K + +YDS+   +       RG
Sbjct: 559 ASVKRWTRKVDIFAFDIVLVPVHL-GMHWCMAVIDMGEKKIEFYDSLYDGNTAVLPALRG 617

Query: 92  CL----------------------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKD 129
            L                       D+P+QQN SDCGVF+  F E+ SR     +  QK+
Sbjct: 618 YLEAESLDKKKTAMNFSGWTIQQMTDIPRQQNGSDCGVFSCQFGEWASRRTTP-RFTQKN 676

Query: 130 MPYYRKKMMAEILSKKLL 147
           MPYYRK+M+ EI+SKKLL
Sbjct: 677 MPYYRKRMVYEIVSKKLL 694

Protease that deconjugates smo-1 from targeted proteins and may catalyze the processing of smo-1 to its mature form.
Caenorhabditis elegans (taxid: 6239)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8

>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1

 Score =  100 bits (248), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/153 (37%), Positives = 84/153 (54%), Gaps = 30/153 (19%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           VD+FS DILLVPIH+  +HWCL  +DFR+K +TYYDSM G       ++  +  ILL  +
Sbjct: 512 VDVFSVDILLVPIHL-GVHWCLAVVDFRRKSITYYDSMGG-------INNEACRILLQYL 563

Query: 61  HVQKIHWCLATID------FRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAE 114
             + +       D      F KK                 ++PQQ N SDCG+F   +A+
Sbjct: 564 KQESVDKKRKEFDTNGWQLFSKKS---------------QEIPQQMNGSDCGMFACKYAD 608

Query: 115 YLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL 147
            ++++  I    Q+ MPY+RK+M+ EIL +KLL
Sbjct: 609 CITKDRPI-NFTQQHMPYFRKRMVWEILHRKLL 640

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. Deconjugates SUMO1 from HIPK2. Deconjugates SUMO1 from HDAC1, which decreases its transcriptional repression activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 30/153 (19%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           VD+FS DILLVPIH+  +HWCL  +DFRKK +TYYDSM G       ++  +  ILL  +
Sbjct: 516 VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGG-------INNEACRILLQYL 567

Query: 61  HVQKIHWCLATID------FRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAE 114
             + I       D      F KK                 ++PQQ N SDCG+F   +A+
Sbjct: 568 KQESIDKKRKEFDTNGWQLFSKKS---------------QEIPQQMNGSDCGMFACKYAD 612

Query: 115 YLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL 147
            ++++  I    Q+ MPY+RK+M+ EIL +KLL
Sbjct: 613 CITKDRPI-NFTQQHMPYFRKRMVWEILHRKLL 644

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. Deconjugates SUMO1 from HIPK2. Deconjugates SUMO1 from HDAC1, which decreases its transcriptional repression activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 30/153 (19%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           VD+FS DILLVPIH+  +HWCL  +DFRKK +TYYDSM G       ++  +  ILL  +
Sbjct: 517 VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGG-------INNEACRILLQYL 568

Query: 61  HVQKIHWCLATID------FRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAE 114
             + I       D      F KK                 ++PQQ N SDCG+F   +A+
Sbjct: 569 KQESIDKKRKEFDTNGWQLFSKKS---------------QEIPQQMNGSDCGMFACKYAD 613

Query: 115 YLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL 147
            ++++  I    Q+ MPY+RK+M+ EIL +KLL
Sbjct: 614 CITKDRPI-NFTQQHMPYFRKRMVWEILHRKLL 645

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. Deconjugates SUMO1 from HIPK2. Deconjugates SUMO1 from HDAC1, which decreases its transcriptional repression activity.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 33/131 (25%)

Query: 48  VDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGP-DRGC-------------- 92
           V+LF  +I+LVPIH +K+HW L  ID RKKCL Y DSM     R C              
Sbjct: 461 VNLFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTK 519

Query: 93  ----LN------------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKK 136
               LN            ++PQQ N SDCG+FT  +A+Y+SR+  I    Q  MP +RKK
Sbjct: 520 RNIDLNLLEWTHYSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPI-TFTQHQMPLFRKK 578

Query: 137 MMAEILSKKLL 147
           M+ EIL ++LL
Sbjct: 579 MVWEILHQQLL 589

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. May down-regulate CTNNB1 levels and thereby modulate the Wnt pathway.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 33/131 (25%)

Query: 48  VDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGP-DRGC-------------- 92
           V+LF  +I+LVPIH +K+HW L  ID RKKCL Y DSM     R C              
Sbjct: 461 VNLFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTK 519

Query: 93  ----LN------------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKK 136
               LN            ++PQQ N SDCG+FT  +A+Y+SR+  I    Q  MP +RKK
Sbjct: 520 RNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPI-TFTQHQMPLFRKK 578

Query: 137 MMAEILSKKLL 147
           M+ EIL ++LL
Sbjct: 579 MVWEILHQQLL 589

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. May down-regulate CTNNB1 levels and thereby modulate the Wnt pathway.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 60/148 (40%), Positives = 83/148 (56%), Gaps = 20/148 (13%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGP-DRGCLNVDLFSYDILLVP 59
           V+LF  +++LVPIH +K+HW L  +D RKKCL Y DSM     R C        +ILL  
Sbjct: 460 VNLFEQELVLVPIH-RKVHWSLVVMDLRKKCLKYLDSMGQKGHRIC--------EILLQ- 509

Query: 60  IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
            ++Q         D      T+Y SM        +++PQQ N SDCG+FT  +A+Y+SR+
Sbjct: 510 -YLQDESKTKRNTDLNLLEWTHY-SMKP------HEIPQQLNGSDCGMFTCKYADYISRD 561

Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
             I    Q  MP +RKKM+ EIL ++LL
Sbjct: 562 KPI-TFTQHQMPLFRKKMVWEILHQQLL 588

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. May down-regulate CTNNB1 levels and thereby modulate the Wnt pathway (By similarity). Isoform 3 activates transcription.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q9EQE1|SENP2_RAT Sentrin-specific protease 2 OS=Rattus norvegicus GN=Senp2 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 60/148 (40%), Positives = 83/148 (56%), Gaps = 20/148 (13%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGP-DRGCLNVDLFSYDILLVP 59
           V+LF  +++LVPIH +K+HW L  +D RKKCL Y DSM     R C        +ILL  
Sbjct: 460 VNLFDQELVLVPIH-RKVHWSLVVMDLRKKCLKYLDSMGQKGHRIC--------EILLQ- 509

Query: 60  IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
            ++Q         D      T+Y SM        +++PQQ N SDCG+FT  +A+Y+SR+
Sbjct: 510 -YLQDESKTKRNTDLNLLEWTHY-SMKP------HEIPQQLNGSDCGMFTCKYADYISRD 561

Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
             I    Q  MP +RKKM+ EIL ++LL
Sbjct: 562 KPI-TFTQHQMPLFRKKMVWEILHQQLL 588

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. May down-regulate CTNNB1 levels and thereby modulate the Wnt pathway.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q9EP97|SENP3_MOUSE Sentrin-specific protease 3 OS=Mus musculus GN=Senp3 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 21/146 (14%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           VD+F+ ++LL+PIH++ +HW L ++D R++ +TY+DS    +R C             P 
Sbjct: 442 VDIFNKELLLIPIHLE-VHWSLISVDVRRRTITYFDSQRTLNRRC-------------PK 487

Query: 61  HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
           H+ K    L     +K  L ++    G  +    +V +Q N SDCG F   + ++L+ + 
Sbjct: 488 HIAKY---LQAEAVKKDRLDFHQGWKGYFK---MNVARQNNDSDCGAFVLQYCKHLALSQ 541

Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKL 146
             F   Q+DMP  R+++  E+   KL
Sbjct: 542 P-FSFTQQDMPKLRRQIYKELCHCKL 566

Deconjugates SUMO2 and SUMO3 from CDCA8. Redox sensor that, when redistributed into nucleoplasm, can act as an effector to enhance HIF1A transcriptional activity by desumoylating EP300. Required for rRNA processing through deconjugation of SUMO2 and SUMO3 from nucleophosmin, NPM1 (By similarity). Protease that releases SUMO2 and SUMO3 monomers from sumoylated substrates, but has only weak activity against SUMO1 conjugates. Deconjugates SUMO2 from MEF2D, which increases its transcriptional activation capability.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q9H4L4|SENP3_HUMAN Sentrin-specific protease 3 OS=Homo sapiens GN=SENP3 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 21/146 (14%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           VD+F+ ++LL+PIH++ +HW L ++D R++ +TY+DS    +R C             P 
Sbjct: 448 VDIFNKELLLIPIHLE-VHWSLISVDVRRRTITYFDSQRTLNRRC-------------PK 493

Query: 61  HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
           H+ K    L     +K  L ++    G  +    +V +Q N SDCG F   + ++L+ + 
Sbjct: 494 HIAKY---LQAEAVKKDRLDFHQGWKGYFK---MNVARQNNDSDCGAFVLQYCKHLALSQ 547

Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKL 146
             F   Q+DMP  R+++  E+   KL
Sbjct: 548 P-FSFTQQDMPKLRRQIYKELCHCKL 572

Protease that releases SUMO2 and SUMO3 monomers from sumoylated substrates, but has only weak activity against SUMO1 conjugates. Deconjugates SUMO2 from MEF2D, which increases its transcriptional activation capability. Deconjugates SUMO2 and SUMO3 from CDCA8. Redox sensor that, when redistributed into nucleoplasm, can act as an effector to enhance HIF1A transcriptional activity by desumoylating EP300. Required for rRNA processing through deconjugation of SUMO2 and SUMO3 from nucleophosmin, NPM1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
399138607	484	sentrin-specific protease 1 [Scylla para	0.858	0.262	0.428	9e-24
405967691	382	Sentrin-specific protease 1 [Crassostrea	0.858	0.332	0.408	2e-23
312075488	612	hypothetical protein LOAG_04854 [Loa loa	0.851	0.205	0.417	2e-23
345487052	542	PREDICTED: sentrin-specific protease 1-l	0.858	0.234	0.421	2e-23
312380638	768	hypothetical protein AND_07255 [Anophele	0.871	0.167	0.391	4e-23
427792177	522	Putative sentrin/sumo-specific protease,	0.722	0.204	0.405	4e-23
427781515	612	Putative sentrin/sumo-specific protease	0.722	0.174	0.405	4e-23
170579699	680	Ulp1 protease family, C-terminal catalyt	0.851	0.185	0.398	5e-23
358331887	617	sentrin-specific protease 1 [Clonorchis	0.635	0.152	0.436	1e-22
125852188	729	PREDICTED: sentrin-specific protease 1 [	0.662	0.134	0.412	2e-22

>gi|399138607|gb|AFP23393.1| sentrin-specific protease 1 [Scylla paramamosain]

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 20/147 (13%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           VD+F+Y+ILLVPIH+  +HWC+  +DFRK+C+TYYDSM G +  CL       ++LL  I
Sbjct: 316 VDIFTYNILLVPIHLD-VHWCMAMVDFRKRCITYYDSMLGDNPECL-------ELLLEYI 367

Query: 61  HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
             + +          KK + Y    A     C  D+P+Q N SDCG+F+  FAE+ SR A
Sbjct: 368 KAEHLD---------KKKIAY--RTAAWKLECAKDIPEQMNGSDCGMFSCKFAEFKSRLA 416

Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKLL 147
            +    Q+DMPY+R++M+ EI+  KLL
Sbjct: 417 PL-DFTQEDMPYFRQRMVYEIIKGKLL 442

Source: Scylla paramamosain

Species: Scylla paramamosain

Genus: Scylla

Family: Portunidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405967691|gb|EKC32825.1| Sentrin-specific protease 1 [Crassostrea gigas]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 88/147 (59%), Gaps = 20/147 (13%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           VD+FS D +L+P+H+  +HWCL  IDF+KK + Y+DSM G + GCLN             
Sbjct: 255 VDIFSKDYILIPVHL-GMHWCLAVIDFKKKMIRYFDSMGGNNVGCLN------------- 300

Query: 61  HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
              K + C  ++D +K+       ++        D+PQQ N SDCG+F   FAEY++R A
Sbjct: 301 -ALKDYLCAESLDKKKQKF----DLSEWKTEIAKDIPQQMNGSDCGMFACKFAEYITREA 355

Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKLL 147
           DI    Q+ MPY+RK+M+ EI++K+LL
Sbjct: 356 DI-NFSQEHMPYFRKRMVYEIVTKQLL 381

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|312075488|ref|XP_003140439.1| hypothetical protein LOAG_04854 [Loa loa]

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 20/146 (13%)

Query: 2   DLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIH 61
           D+F+Y++LL+P+H+   HWCLT IDF+ + + YYDSM G +  CL       DIL     
Sbjct: 487 DIFAYELLLIPVHLGA-HWCLTVIDFKNRVIDYYDSMGGSNDHCL-------DIL----- 533

Query: 62  VQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNAD 121
               + C  ++D RKK       ++G       D+PQQ N SDCG+F   FAEY +R A 
Sbjct: 534 --SEYLCEESVDKRKKEF----DLSGWQLVNREDIPQQMNGSDCGMFACKFAEYAARRAQ 587

Query: 122 IFKIKQKDMPYYRKKMMAEILSKKLL 147
           I    Q  MPY+R++M+ EI  KKLL
Sbjct: 588 I-SFSQDHMPYFRERMVYEICQKKLL 612

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|345487052|ref|XP_003425614.1| PREDICTED: sentrin-specific protease 1-like [Nasonia vitripennis]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 86/147 (58%), Gaps = 20/147 (13%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           VD+F+ DI+++PIH+  IHWC++ IDFRK+ + Y+DSM  P+  CL              
Sbjct: 416 VDIFAKDIIVIPIHL-GIHWCMSIIDFRKRSIQYFDSMGSPNYKCL-------------- 460

Query: 61  HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
            V K +    +ID +KK   + D        C+ D+PQQ N SDCGVF+  FAEY+  N 
Sbjct: 461 QVLKQYLQEESIDKKKKHFDFLDWTF----ECIKDIPQQMNGSDCGVFSCMFAEYICSNK 516

Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKLL 147
            I    Q DMPY+R KM+ EIL+ +LL
Sbjct: 517 TI-NFTQDDMPYFRNKMVYEILTVQLL 542

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312380638|gb|EFR26576.1| hypothetical protein AND_07255 [Anopheles darlingi]

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 19/148 (12%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           VDLFS+DI++VP+HV ++HWC+  ID R+K + YYDS+  P+   L + L +Y       
Sbjct: 640 VDLFSFDIIVVPVHVNEVHWCMAIIDLRRKAIEYYDSLGAPNNPVLEM-LENY------- 691

Query: 61  HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
                  C  ++D R+     +D      R  ++D P+Q N SDCGVF+  FAE+L+R+ 
Sbjct: 692 ------LCQESLDKRQ---VPFDKTGLTKRN-MSDCPKQNNGSDCGVFSCMFAEFLTRDH 741

Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKLLT 148
            I    Q  M Y+R+KMM EI   +L+T
Sbjct: 742 PI-TFNQSRMQYFRRKMMLEIAQGELIT 768

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427792177|gb|JAA61540.1| Putative sentrin/sumo-specific protease, partial [Rhipicephalus pulchellus]

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 31/138 (22%)

Query: 39  AGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCL----- 93
           A   R    VD+FS+D++LVP+H+  +HWCLA IDFR   + YYDSM G +  CL     
Sbjct: 387 AAIKRWTRRVDIFSHDLILVPVHL-GVHWCLAVIDFRHSTIRYYDSMGGQNPKCLEALRK 445

Query: 94  ------------------------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKD 129
                                    D+PQQ N SDCG+F   +AEY++R+A I   +Q +
Sbjct: 446 YLQEESRDKKQKELDLSDWTYETVKDIPQQMNGSDCGMFALKYAEYITRDAKI-TFEQLN 504

Query: 130 MPYYRKKMMAEILSKKLL 147
           MPY+R++M+ EIL+ KLL
Sbjct: 505 MPYFRRRMVYEILTNKLL 522

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427781515|gb|JAA56209.1| Putative sentrin/sumo-specific protease [Rhipicephalus pulchellus]

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 31/138 (22%)

Query: 39  AGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCL----- 93
           A   R    VD+FS+D++LVP+H+  +HWCLA IDFR   + YYDSM G +  CL     
Sbjct: 477 AAIKRWTRRVDIFSHDLILVPVHL-GVHWCLAVIDFRHSTIRYYDSMGGQNPKCLEALRK 535

Query: 94  ------------------------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKD 129
                                    D+PQQ N SDCG+F   +AEY++R+A I   +Q +
Sbjct: 536 YLQEESRDKKQKELDLSDWTYETVKDIPQQMNGSDCGMFALKYAEYITRDAKI-TFEQLN 594

Query: 130 MPYYRKKMMAEILSKKLL 147
           MPY+R++M+ EIL+ KLL
Sbjct: 595 MPYFRRRMVYEILTNKLL 612

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170579699|ref|XP_001894945.1| Ulp1 protease family, C-terminal catalytic domain containing protein [Brugia malayi] gi|158598286|gb|EDP36210.1| Ulp1 protease family, C-terminal catalytic domain containing protein [Brugia malayi]

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 22/148 (14%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           +D+FSY++LL+P+H+   HWCL  IDF+ + + YYDSM G +  CL+             
Sbjct: 554 IDIFSYELLLIPVHLGA-HWCLAVIDFKNRIIDYYDSMGGSNDYCLD------------- 599

Query: 61  HVQKIHWCLATIDFRKKCLTYYD-SMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
            V   + C  ++D R+K     D  +   D     D+PQQ N SDCG+F   FAEY +R 
Sbjct: 600 -VMSEYLCEESLDKRRKEFDLSDWQLVNRD-----DIPQQMNGSDCGMFACKFAEYAARR 653

Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
           A I    Q  MPY+R++M+ EI  KKLL
Sbjct: 654 AQI-SFSQDHMPYFRERMVYEICRKKLL 680

Source: Brugia malayi

Species: Brugia malayi

Genus: Brugia

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|358331887|dbj|GAA50648.1| sentrin-specific protease 1 [Clonorchis sinensis]

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/126 (43%), Positives = 72/126 (57%), Gaps = 32/126 (25%)

Query: 54  DILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCL-------------------- 93
           D++L+PIH + +HWCLA +DFR+K LTYYDSM   +  CL                    
Sbjct: 483 DLVLIPIHDRGMHWCLACVDFRRKTLTYYDSMGSKNDNCLRTLMSYLQSEWQDKKGQPLP 542

Query: 94  -----------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEIL 142
                      + VPQQ N SDCGVFT T+ E+LSR+A +    Q DMP  RK+MM EIL
Sbjct: 543 DPDSWTLINSEDSVPQQMNGSDCGVFTCTYGEFLSRDAKL-TFSQDDMPGIRKRMMYEIL 601

Query: 143 SKKLLT 148
           +++LLT
Sbjct: 602 TQQLLT 607

Source: Clonorchis sinensis

Species: Clonorchis sinensis

Genus: Clonorchis

Family: Opisthorchiidae

Order: Opisthorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|125852188|ref|XP_001343517.1| PREDICTED: sentrin-specific protease 1 [Danio rerio]

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/131 (41%), Positives = 77/131 (58%), Gaps = 33/131 (25%)

Query: 48  VDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAG-PDRGCL------------- 93
           VD+FS D++LVP+H+  +HWCL+ +DFR K +TY+DSM G  D  C              
Sbjct: 600 VDIFSVDLILVPVHL-GVHWCLSVVDFRNKSITYFDSMGGNNDEACRILLNYLKQESEDK 658

Query: 94  -----------------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKK 136
                            N++PQQ N SDCG+FT  +AEY++++  I    QK MPY+RK+
Sbjct: 659 KGQKMETSGWSLKSKRPNEIPQQMNGSDCGMFTCKYAEYITKDRSI-TFTQKHMPYFRKR 717

Query: 137 MMAEILSKKLL 147
           M+ EIL++KLL
Sbjct: 718 MVWEILNRKLL 728

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
ZFIN|ZDB-GENE-030131-6462	729	si:dkey-21c19.3 "si:dkey-21c19	0.358	0.072	0.537	6.8e-24
WB|WBGene00006736	697	ulp-1 [Caenorhabditis elegans	0.364	0.077	0.563	6.3e-21
UNIPROTKB|F1NYU6	247	F1NYU6 "Uncharacterized protei	0.702	0.421	0.365	7.1e-13
FB|FBgn0052110	411	CG32110 [Drosophila melanogast	0.344	0.124	0.519	2.6e-20
UNIPROTKB|E1BYD7	454	E1BYD7 "Uncharacterized protei	0.702	0.229	0.365	4.8e-12
FB|FBgn0027603	1513	Ulp1 "Ulp1" [Drosophila melano	0.378	0.037	0.482	6.6e-19
FB|FBgn0031208	480	CG11023 [Drosophila melanogast	0.378	0.116	0.482	1.2e-18
UNIPROTKB|F1M0I3	441	F1M0I3 "Uncharacterized protei	0.709	0.238	0.319	1.5e-10
RGD|1303230	475	Senp18 "Sumo1/sentrin/SMT3 spe	0.709	0.221	0.319	4.9e-11
RGD|2324522	475	LOC100362532 "Sumo1/sentrin/SM	0.709	0.221	0.319	4.9e-11

ZFIN|ZDB-GENE-030131-6462 si:dkey-21c19.3 "si:dkey-21c19.3" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 6.8e-24, Sum P(2) = 6.8e-24
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query:    94 NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL 147
             N++PQQ N SDCG+FT  +AEY++++  I    QK MPY+RK+M+ EIL++KLL
Sbjct:   676 NEIPQQMNGSDCGMFTCKYAEYITKDRSI-TFTQKHMPYFRKRMVWEILNRKLL 728

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

WB|WBGene00006736 ulp-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 163 (62.4 bits), Expect = 6.3e-21, Sum P(2) = 6.3e-21
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query:    93 LNDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL 147
             + D+P+QQN SDCGVF+  F E+ SR     +  QK+MPYYRK+M+ EI+SKKLL
Sbjct:   641 MTDIPRQQNGSDCGVFSCQFGEWASRRTTP-RFTQKNMPYYRKRMVYEIVSKKLL 694

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0000003 "reproduction" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0032880 "regulation of protein localization" evidence=IMP

UNIPROTKB|F1NYU6 F1NYU6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 45/123 (36%), Positives = 64/123 (52%)

Query:     1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGP-DRGCLNVDLFSYDILLVP 59
             V+LF  DI+LVPIH++  HW L  +D RKK +TY+DS     D+ C  V    Y      
Sbjct:   119 VNLFKQDIILVPIHLRS-HWTLVVVDVRKKTITYFDSFGKKGDKICETV--LQY------ 169

Query:    60 IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
               +Q+  W    +       T + SM        +++PQQ N SDCGVF   +A+Y+SR+
Sbjct:   170 --LQEESWEKQNVKLSSSEWTLH-SMES------HEIPQQSNGSDCGVFMCKYADYVSRD 220

Query:   120 ADI 122
               I
Sbjct:   221 KPI 223

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

FB|FBgn0052110 CG32110 [Drosophila melanogaster (taxid:7227)]

 Score = 137 (53.3 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
 Identities = 27/52 (51%), Positives = 36/52 (69%)

Query:    95 DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKL 146
             +VPQQ N +DCGVF   FAEYL+R+A I    +KDM Y+R KM+ E+   +L
Sbjct:   359 NVPQQDNMNDCGVFVCMFAEYLTRDAPI-TFSKKDMKYFRTKMVLELTGDQL 409

GO:0008233 "peptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0016926 "protein desumoylation" evidence=ISS

GO:0016929 "SUMO-specific protease activity" evidence=ISS

UNIPROTKB|E1BYD7 E1BYD7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 170 (64.9 bits), Expect = 4.8e-12, P = 4.8e-12
 Identities = 45/123 (36%), Positives = 64/123 (52%)

Query:     1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGP-DRGCLNVDLFSYDILLVP 59
             V+LF  DI+LVPIH++  HW L  +D RKK +TY+DS     D+ C  V    Y      
Sbjct:   326 VNLFKQDIILVPIHLRS-HWTLVVVDVRKKTITYFDSFGKKGDKICETV--LQY------ 376

Query:    60 IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
               +Q+  W    +       T + SM        +++PQQ N SDCGVF   +A+Y+SR+
Sbjct:   377 --LQEESWEKQNVKLSSSEWTLH-SMES------HEIPQQSNGSDCGVFMCKYADYVSRD 427

Query:   120 ADI 122
               I
Sbjct:   428 KPI 430

GO:0006508 "proteolysis" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0016929 "SUMO-specific protease activity" evidence=IEA

FB|FBgn0027603 Ulp1 "Ulp1" [Drosophila melanogaster (taxid:7227)]

 Score = 143 (55.4 bits), Expect = 6.6e-19, Sum P(2) = 6.6e-19
 Identities = 27/56 (48%), Positives = 35/56 (62%)

Query:    39 AGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN 94
             AG  R    VDLFS DI+ VP+H   +HWC+A I  R K + YYDSM  P++  L+
Sbjct:  1376 AGVRRWTRKVDLFSKDIIPVPVHCGNVHWCMAIIHLRNKTIFYYDSMGRPNQPALD 1431

GO:0004843 "ubiquitin-specific protease activity" evidence=NAS

GO:0008233 "peptidase activity" evidence=NAS

GO:0006508 "proteolysis" evidence=IEA

GO:0005637 "nuclear inner membrane" evidence=IDA

GO:0005643 "nuclear pore" evidence=IDA

GO:0016485 "protein processing" evidence=IDA

GO:0016929 "SUMO-specific protease activity" evidence=ISS;IDA

GO:0071456 "cellular response to hypoxia" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0021952 "central nervous system projection neuron axonogenesis" evidence=IMP

GO:0016926 "protein desumoylation" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0060997 "dendritic spine morphogenesis" evidence=IMP

FB|FBgn0031208 CG11023 [Drosophila melanogaster (taxid:7227)]

 Score = 141 (54.7 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 27/56 (48%), Positives = 34/56 (60%)

Query:    39 AGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN 94
             AG  R    VDLFS DI+ VP+H   +HWC+A I  R K + YYDS   P+R  L+
Sbjct:   345 AGIKRWTRKVDLFSKDIIPVPVHCNGVHWCMAIIHLRNKTIRYYDSKGKPNRPVLD 400

GO:0006508 "proteolysis" evidence=IEA

GO:0016926 "protein desumoylation" evidence=ISS

GO:0016929 "SUMO-specific protease activity" evidence=ISS

UNIPROTKB|F1M0I3 F1M0I3 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 39/122 (31%), Positives = 64/122 (52%)

Query:     1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
             ++LF  +++LVPIH Q++HW L  ID RK+ + Y DSM    +      +F Y   L   
Sbjct:   313 INLFEKELILVPIH-QRVHWSLVVIDLRKQSIVYLDSMGQTGKNICET-IFHY---LQNE 367

Query:    61 HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
                +    L  +++++  LT              ++PQQ N SDCG+FT  +A+Y+SR+ 
Sbjct:   368 SKTRRDIELDPVEWKQYSLTS------------QEIPQQLNGSDCGMFTCKYADYISRDQ 415

Query:   121 DI 122
              +
Sbjct:   416 PV 417

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

RGD|1303230 Senp18 "Sumo1/sentrin/SMT3 specific peptidase 18" [Rattus norvegicus (taxid:10116)]

 Score = 161 (61.7 bits), Expect = 4.9e-11, P = 4.9e-11
 Identities = 39/122 (31%), Positives = 65/122 (53%)

Query:     1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
             ++LF  +++LVPIH Q++HW L  ID RK+ + Y DSM    +      +F Y   L   
Sbjct:   347 INLFEKELILVPIH-QRVHWSLVVIDLRKRSIVYLDSMGQTGKNICET-IFHY---LQNE 401

Query:    61 HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
                + +  L  +++++  LT              ++PQQ N SDCG+FT  +A+Y+SR+ 
Sbjct:   402 SKTRRNMELDPVEWKQYSLTS------------QEIPQQLNGSDCGMFTCKYADYISRDQ 449

Query:   121 DI 122
              +
Sbjct:   450 PV 451

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

RGD|2324522 LOC100362532 "Sumo1/sentrin/SMT3 specific peptidase 18-like" [Rattus norvegicus (taxid:10116)]

 Score = 161 (61.7 bits), Expect = 4.9e-11, P = 4.9e-11
 Identities = 39/122 (31%), Positives = 65/122 (53%)

Query:     1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
             ++LF  +++LVPIH Q++HW L  ID RK+ + Y DSM    +      +F Y   L   
Sbjct:   347 INLFEKELILVPIH-QRVHWSLVVIDLRKRSIVYLDSMGQTGKNICET-IFHY---LQNE 401

Query:    61 HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
                + +  L  +++++  LT              ++PQQ N SDCG+FT  +A+Y+SR+ 
Sbjct:   402 SKTRRNMELDPVEWKQYSLTS------------QEIPQQLNGSDCGMFTCKYADYISRDQ 449

Query:   121 DI 122
              +
Sbjct:   450 PV 451

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.691
3rd Layer	3.4.22.68	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	148
COG5160	578	COG5160, ULP1, Protease, Ulp1 family [Posttranslat	2e-20
PLN03189	490	PLN03189, PLN03189, Protease specific for SMALL UB	4e-16
pfam02902	216	pfam02902, Peptidase_C48, Ulp1 protease family, C-	1e-15

>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

 Score = 86.1 bits (213), Expect = 2e-20
 Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)

Query: 47  NVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN------------ 94
             D+FS   + +PI++   HW LA ID  KK + Y+DS+A      L             
Sbjct: 447 KTDIFSKKYIFIPINIS-YHWFLAIIDNPKKNILYFDSLANTHDPVLEFLRSYLLDEYKI 505

Query: 95  -------------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEI 141
                         VPQQ+N SDCGVF   F  Y   N       + D P  RK M   I
Sbjct: 506 QHDKDPQIKMKHCKVPQQRNGSDCGVFVCMFIRYFLENPPEQ-FSKNDRPRARKNMAHTI 564

Query: 142 LSKKLL 147
              ++ 
Sbjct: 565 KDLQIN 570

Length = 578

>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

 Score = 73.3 bits (180), Expect = 4e-16
 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 31/121 (25%)

Query: 54  DILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN------------------- 94
           D + VPIH Q+IHW LA I+ + +   Y DS+ G D   L+                   
Sbjct: 370 DKIFVPIH-QEIHWTLAVINKKDQKFQYLDSLKGRDPKILDALAKYYVDEVKDKSEKDID 428

Query: 95  ----------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSK 144
                     D+P+Q+N  DCG+F   + ++ SR   +    Q+ MPY+R +   EIL  
Sbjct: 429 VSSWEQEFVEDLPEQKNGYDCGMFMIKYIDFYSRGLGLC-FGQEHMPYFRLRTAKEILRL 487

Query: 145 K 145
           K
Sbjct: 488 K 488

Length = 490

>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain

 Score = 70.2 bits (172), Expect = 1e-15
 Identities = 36/145 (24%), Positives = 52/145 (35%), Gaps = 37/145 (25%)

Query: 34  YYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCL 93
           +Y+ +    R      LF  DI+ +PI+    HW L  I+  KK +T  DS+       +
Sbjct: 64  FYNGVRRWTRKVNKKWLFDVDIIYIPINWDGKHWVLLIINLPKKTITILDSLISLHTEAV 123

Query: 94  ND------------------------------------VPQQQNSSDCGVFTSTFAEYLS 117
                                                 VPQQ NS DCG +   F E L+
Sbjct: 124 KKRIRPIDNMLPYLMSEALKKEQDDPDLTPFEIKRLTKVPQQPNSGDCGPYVLKFIELLA 183

Query: 118 RNADI-FKIKQKDMPYYRKKMMAEI 141
                 F    KD+  +RKK+  +I
Sbjct: 184 EGVPFEFLTADKDVDRFRKKLAVDI 208

This domain contains the catalytic triad Cys-His-Asn. Length = 216

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
KOG0778|consensus	511		100.0
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	100.0
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	100.0
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.94
KOG3246|consensus	223		99.81
KOG0779|consensus	595		98.88
PF03290	423	Peptidase_C57: Vaccinia virus I7 processing peptid	98.01
PF00770	183	Peptidase_C5: Adenovirus endoprotease; InterPro: I	97.19
PRK14848	317	deubiquitinase SseL; Provisional	96.84
PRK11836	403	deubiquitinase; Provisional	96.65
KOG0778|consensus	511		96.15
PF03421	177	YopJ: YopJ Serine/Threonine acetyltransferase; Int	91.05
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	86.13
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	84.84

>KOG0778|consensus

Probab=100.00  E-value=1.4e-41  Score=282.84  Aligned_cols=124  Identities=45%  Similarity=0.835  Sum_probs=115.4

Q ss_pred             EEEEEeeeecchhhhccCCCCCCCCCccccCccCCCEEEEeEEecCceEEEEEEcccCCeeEEecCCCCCCccccc----
Q psy12908         19 HWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN----   94 (148)
Q Consensus        19 ~~~~~tff~~~L~~~~~~~~~~~~~w~~~~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~i~~~DSl~~~~~~~~~----   94 (148)
                      .++||||||++|..   .||++|+|||++++||++|+|++|||. +.||+|+|||.++++|.|||||++......+    
T Consensus       359 ~h~FnTFFy~kL~~---~gy~~VkRWTk~v~if~~d~i~vPIH~-~vHW~l~vid~r~k~i~y~DS~~~~~nr~~~aL~~  434 (511)
T KOG0778|consen  359 VHAFNTFFYTKLVG---RGYAGVKRWTKKVDIFDKDIIFVPIHL-GVHWCLAVIDLREKTIEYYDSLGGGPNRICDALAK  434 (511)
T ss_pred             EEEEechhhhhhhh---cchHHHHhHhhccCccccceeEeeeec-CceEEEEEEEcccceEEEeeccCCCCcchHHHHHH
Confidence            34699999999998   899999999999999999999999999 9999999999999999999999965332111    


Q ss_pred             -------------------------cCCCCCCCCCchHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHhCCcC
Q psy12908         95 -------------------------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL  147 (148)
Q Consensus        95 -------------------------~~p~Q~n~~DCGvfv~~~~~~~~~~~~~~~~~~~~~~~~R~~i~~~ll~~~l~  147 (148)
                                               ++|||.||+|||+|+|+|+++++.|.|+ +|+|.||++||++|++||++++|+
T Consensus       435 Yl~~E~~~k~~~~~d~s~w~~~~~~~iP~Q~Ng~DCG~f~c~~~~~~s~~~p~-~ftq~dmp~fR~~m~~eI~~~~l~  511 (511)
T KOG0778|consen  435 YLQDESRDKSKKDFDVSGWTIEFVQNIPQQRNGSDCGMFVCKYADYISRDVPL-TFTQQDMPYFRKKMAKEILHLKLL  511 (511)
T ss_pred             HHHHHHhhhhcCCCCccchhhhhhhccccccCCCccceEEeeechhhccCCCc-ccChhhhHHHHHHHHHHHHhhhcC
Confidence                                     8999999999999999999999999999 999999999999999999999985

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=100.00  E-value=3.8e-37  Score=254.73  Aligned_cols=127  Identities=33%  Similarity=0.567  Sum_probs=113.5

Q ss_pred             ceEEEEEeeeecchhhhc-cCCCCCCCCCccc----cCccCCCEEEEeEEecCceEEEEEEcccCCeeEEecCCCCCCcc
Q psy12908         17 KIHWCLTTIDFRKKCLTY-YDSMAGPDRGCLN----VDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRG   91 (148)
Q Consensus        17 ~~~~~~~tff~~~L~~~~-~~~~~~~~~w~~~----~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~i~~~DSl~~~~~~   91 (148)
                      +.| +||||||++|...+ ..+|++|+||+++    .+++++++||||||. +.||+|+|||+++++|.|||||++.+..
T Consensus       329 k~h-~FNTFFytkL~~~~~~ygY~~VrRWTk~kKigv~Lfs~D~IFIPIh~-n~HWsLaVId~k~k~I~yyDSLgg~~~~  406 (490)
T PLN03189        329 KCH-FFNTFFYKKLVSGKSGYDYKAVRRWTTQKKLGYHLIDCDKIFVPIHQ-EIHWTLAVINKKDQKFQYLDSLKGRDPK  406 (490)
T ss_pred             ceE-EEehHHHHHHhhcCCcCChHHHHHHhhhcccccccccCceEEeeeec-CCeeEEEEEEcCCCeEEEEeCCCCCCHH
Confidence            455 59999999999852 3479999999974    468999999999999 8999999999999999999999987653


Q ss_pred             cc-----------------------------ccCCCCCCCCCchHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHH
Q psy12908         92 CL-----------------------------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEIL  142 (148)
Q Consensus        92 ~~-----------------------------~~~p~Q~n~~DCGvfv~~~~~~~~~~~~~~~~~~~~~~~~R~~i~~~ll  142 (148)
                      .+                             .++|||.||+|||||||+||++++.|.++ +|+|+||+.+|++|++||+
T Consensus       407 vL~~L~rYL~~E~kdK~g~d~D~s~W~~~~~~~vPQQ~NG~DCGVFVL~yAE~~SrG~~L-tFSQeDMp~fRrRma~EIl  485 (490)
T PLN03189        407 ILDALAKYYVDEVKDKSEKDIDVSSWEQEFVEDLPEQKNGYDCGMFMIKYIDFYSRGLGL-CFGQEHMPYFRLRTAKEIL  485 (490)
T ss_pred             HHHHHHHHHHHHHhhhcCCCcchhcceeccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCC-CcChhhhHHHHHHHHHHHH
Confidence            21                             17899999999999999999999999999 8999999999999999999


Q ss_pred             hCCc
Q psy12908        143 SKKL  146 (148)
Q Consensus       143 ~~~l  146 (148)
                      ..++
T Consensus       486 ~~r~  489 (490)
T PLN03189        486 RLKA  489 (490)
T ss_pred             Hhhc
Confidence            9875

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.9e-36  Score=246.28  Aligned_cols=122  Identities=34%  Similarity=0.575  Sum_probs=115.2

Q ss_pred             EEEEeeeecchhhhccCCCCCCCCCccccCccCCCEEEEeEEecCceEEEEEEcccCCeeEEecCCCCCCccccc-----
Q psy12908         20 WCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN-----   94 (148)
Q Consensus        20 ~~~~tff~~~L~~~~~~~~~~~~~w~~~~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~i~~~DSl~~~~~~~~~-----   94 (148)
                      ++||||||++|..   .||++|+||+++++||++++|++|||. ..||+|++||.+.+.|.|||||++.+..+++     
T Consensus       423 h~FnTFFYT~Lsr---rGy~gVrrW~kk~dif~~k~I~iPIni-~~HW~l~II~~~~~~i~~~DSLan~~~~v~~~L~~Y  498 (578)
T COG5160         423 HLFNTFFYTKLSR---RGYSGVRRWTKKTDIFSKKYIFIPINI-SYHWFLAIIDNPKKNILYFDSLANTHDPVLEFLRSY  498 (578)
T ss_pred             EEeehhhHHHHHH---HHhHHHHHHHhccCccccceEEEEecc-cceEEEEEeecCcceeEEecccccCcHHHHHHHHHH
Confidence            4699999999998   889999999999999999999999999 9999999999999999999999998765432     


Q ss_pred             --------------------cCCCCCCCCCchHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHhCCc
Q psy12908         95 --------------------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKL  146 (148)
Q Consensus        95 --------------------~~p~Q~n~~DCGvfv~~~~~~~~~~~~~~~~~~~~~~~~R~~i~~~ll~~~l  146 (148)
                                          ++|||+||+|||||||+++++++.+.|. .|++.|++++|++|+++|+..++
T Consensus       499 ~ldE~k~~~~k~~~~~~~~~~vPqQ~Ng~DCGV~vc~~~~~~~~~~p~-~f~~nd~~r~Rk~m~h~i~~~qi  569 (578)
T COG5160         499 LLDEYKIQHDKDPQIKMKHCKVPQQRNGSDCGVFVCMFIRYFLENPPE-QFSKNDRPRARKNMAHTIKDLQI  569 (578)
T ss_pred             HHHHHhcccCCchhhhhhcCCCCCCCCCCccceEEEEeeeecccCChh-hcCccchHHHHHHHHHHHHHHHH
Confidence                                8999999999999999999999999999 99999999999999999998775

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.94  E-value=8.2e-28  Score=181.97  Aligned_cols=129  Identities=27%  Similarity=0.513  Sum_probs=103.0

Q ss_pred             ccccCceEEEEEeeeecchhhhc-----------------cCCCCCCCCCcccc---CccCCCEEEEeEEecCceEEEEE
Q psy12908         12 PIHVQKIHWCLTTIDFRKKCLTY-----------------YDSMAGPDRGCLNV---DLFSYDILLVPIHVQKIHWCLAT   71 (148)
Q Consensus        12 p~~~~~~~~~~~tff~~~L~~~~-----------------~~~~~~~~~w~~~~---~l~~~~~i~iPin~~~~HW~l~~   71 (148)
                      +...+. ..+++|+|+.++....                 .+.+.++.+|.+..   ++++++++++|+|.+++||+|++
T Consensus        23 ~~~~~~-~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~iPin~~~~HW~l~v  101 (216)
T PF02902_consen   23 NKNSKR-VHFFSSFFYQKLTECFKQFKKDKERSKFKWNESKDFYNGVQRWFRKKNKKNLFDKDYIFIPININNNHWVLLV  101 (216)
T ss_dssp             HHTSTT-EEEE-THHHHHHH----HHHCCH--S-----HHHHCHHHCGGGGTTCCTSTGGGSSEEEEEEEETTTEEEEEE
T ss_pred             ccCCCc-EEEECceeeeccccccccccccccccccchhhhhHhhhhhhhhhhccccccccccCEEEEEEechhhccceeE
Confidence            334444 4569999999999210                 13457888999876   89999999999999999999999


Q ss_pred             EcccCCeeEEecCCCCCCc-----ccc-----------------------------ccCCCCCCCCCchHHHHHHHHHHh
Q psy12908         72 IDFRKKCLTYYDSMAGPDR-----GCL-----------------------------NDVPQQQNSSDCGVFTSTFAEYLS  117 (148)
Q Consensus        72 v~~~~~~i~~~DSl~~~~~-----~~~-----------------------------~~~p~Q~n~~DCGvfv~~~~~~~~  117 (148)
                      |+++.+++.+|||+++...     ..+                             .++|||+|++|||+|||+|+++++
T Consensus       102 i~~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~pqQ~n~~dCGv~vl~~~~~~~  181 (216)
T PF02902_consen  102 IDLPKKRIYVYDSLGSSNNDKRYKRVIENIIPFLKREYKKKEGRDPDKSPFKIVRPPNVPQQPNGYDCGVYVLKFMECLL  181 (216)
T ss_dssp             EETTTTEEEEE-TTSTSSH-HHHHHHHHHHHHHHHHHHHHHHSSCT-TTTCEEEEECTS-SSSSSSCHHHHHHHHHHHHH
T ss_pred             EcccccEEEEEeccccccccccchhhhhhhhhhhhhccccccccccccceeeecccccccCCCCCCCcHHHHHHHHHHHH
Confidence            9999999999999999877     100                             078999999999999999999999


Q ss_pred             cCCCCCC---CCCCChHHHHHHHHHHH
Q psy12908        118 RNADIFK---IKQKDMPYYRKKMMAEI  141 (148)
Q Consensus       118 ~~~~~~~---~~~~~~~~~R~~i~~~l  141 (148)
                      .|.+...   ++++++..+|++++.++
T Consensus       182 ~~~~~~~~~~l~~~~i~~~r~~~a~~~  208 (216)
T PF02902_consen  182 EGPSFDFSQELTEEDIKNFRKKLAVDL  208 (216)
T ss_dssp             CTHHSTGCCSBTGHHHHHHHHHHHH--
T ss_pred             hCCCCcccccCCHHHHHHHHHHHHhhc
Confidence            9987732   79999999999999654

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>KOG3246|consensus

Probab=99.81  E-value=5.8e-20  Score=138.36  Aligned_cols=96  Identities=23%  Similarity=0.282  Sum_probs=71.8

Q ss_pred             cccCccCCCEEEEeEEec--------CceEEEEEEcccCCeeEEecCCCCCCccccc--------------------cCC
Q psy12908         46 LNVDLFSYDILLVPIHVQ--------KIHWCLATIDFRKKCLTYYDSMAGPDRGCLN--------------------DVP   97 (148)
Q Consensus        46 ~~~~l~~~~~i~iPin~~--------~~HW~l~~v~~~~~~i~~~DSl~~~~~~~~~--------------------~~p   97 (148)
                      ...++.++++|++|||.+        ++||+|+|+..++++.++|||+.+.+....+                    .+|
T Consensus        81 ~pl~l~~k~~iflpiNDn~~~~~~~GGsHWSLLV~sr~~~~f~hyDS~~n~nt~~a~~l~~kl~~ll~~~~~~~~~~~~~  160 (223)
T KOG3246|consen   81 DPLDLNDKDFIFLPINDNSNVTRASGGSHWSLLVFSRPDGKFYHYDSLSNGNTKDAKSLMKKLRALLKKKFAKRVECKCL  160 (223)
T ss_pred             ChhhcCCCceEEEEecCCCcccccCCCcceEEEEEEeeCCcEEEeecccCCCcHHHHHHHHHHHHHHhhhhhhcccccCh
Confidence            445889999999999983        5799999999999999999999998765321                    789


Q ss_pred             CCCCCCCchHHHHHHHHHHhcCC---CCCCCCCCChHHHHHHHHHHH
Q psy12908         98 QQQNSSDCGVFTSTFAEYLSRNA---DIFKIKQKDMPYYRKKMMAEI  141 (148)
Q Consensus        98 ~Q~n~~DCGvfv~~~~~~~~~~~---~~~~~~~~~~~~~R~~i~~~l  141 (148)
                      ||.||||||+|||.+.+.++...   +..+-.+.+...+|+++-.+|
T Consensus       161 qQqNgyDCG~hV~~~t~~l~~~~~~~~~~~~~~~~~~~~i~~lr~~l  207 (223)
T KOG3246|consen  161 QQQNGYDCGLHVCCNTRVLAERLLRCPYATSSQLLVVDLIKALREEL  207 (223)
T ss_pred             hhhcCCchhHHHHHHHHHHHHHHhccccccccchhhHHHHHHHHHHH
Confidence            99999999999999877665432   221334445544444444333

>KOG0779|consensus

Probab=98.88  E-value=4.1e-10  Score=97.62  Aligned_cols=126  Identities=25%  Similarity=0.324  Sum_probs=88.8

Q ss_pred             ccccCceEEEEEeeeecchhhhc----cC-----CCCCCCCCccccCccCCCEEEEeEEecCceEEEEEEcccCCe----
Q psy12908         12 PIHVQKIHWCLTTIDFRKKCLTY----YD-----SMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKC----   78 (148)
Q Consensus        12 p~~~~~~~~~~~tff~~~L~~~~----~~-----~~~~~~~w~~~~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~----   78 (148)
                      .......|+ +++|||..+..+-    .+     ....+++|++..|++.++++++|+|. ..||.+++++.....    
T Consensus       389 ~~~s~~~h~-f~tffyk~l~~~~~~~~~d~~~~~~~~~~~~~~~~~d~~~k~yi~~P~~E-~~hw~laiic~p~~e~es~  466 (595)
T KOG0779|consen  389 KELSNDRHI-FSTFFYKRLCRKLRQKSNDQIQDNRAVRLRTWTRHFDLFNKDYVFVPTHE-RFHWKLAIICNPDLETETP  466 (595)
T ss_pred             cccCcchhh-hhhHHHhhhhhhhhhhhhhhhhccccCceeeeeeccccccceeEEecCch-HhhhhccccccCccccCcc
Confidence            344444554 9999999988752    11     35678899999999999999999999 999999988765321    


Q ss_pred             --eE----------------EecCCCCCCcc--cc---c--------------------cCCCCCCCCCchHHHHHHHHH
Q psy12908         79 --LT----------------YYDSMAGPDRG--CL---N--------------------DVPQQQNSSDCGVFTSTFAEY  115 (148)
Q Consensus        79 --i~----------------~~DSl~~~~~~--~~---~--------------------~~p~Q~n~~DCGvfv~~~~~~  115 (148)
                        ..                +.|+|......  ..   .                    ..|||.|..|||+|++.|++.
T Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~v~~p~q~n~~dcG~~~~~~v~~  546 (595)
T KOG0779|consen  467 RPRLELLILKLSADFPIVENILDFMKVASIYNNELIVTEDLELEEELPRRLPRGKSETVREPQQNNDVDCGSFVLEFVER  546 (595)
T ss_pred             ccchhhhhhccccccchhhhhhhhhhhcccccCcccccccccccccccccCcccccccccccCccCcccchhhHHHHHHH
Confidence              11                12222221110  00   0                    348999999999999999999


Q ss_pred             HhcCCCC------------CCCCCCChHHHHHHHHH
Q psy12908        116 LSRNADI------------FKIKQKDMPYYRKKMMA  139 (148)
Q Consensus       116 ~~~~~~~------------~~~~~~~~~~~R~~i~~  139 (148)
                      +..+.+-            .+|.+.++..+|..+-.
T Consensus       547 f~e~~~e~~~~~~~~~~~l~~~~~~~~~~~r~~~r~  582 (595)
T KOG0779|consen  547 FIEDAPERFNIEDEGTINLEWFPPKEILKFRDEIRN  582 (595)
T ss_pred             hhhChhhhcccccccccccccCCchHHhhhhhhhhc
Confidence            9877543            24677777788876653

>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.01  E-value=1.4e-05  Score=65.49  Aligned_cols=69  Identities=22%  Similarity=0.281  Sum_probs=55.9

Q ss_pred             CCCEEEEeEEecCceEEEEEEcccCCeeEEecCCCCCCccccc-------------------------------------
Q psy12908         52 SYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN-------------------------------------   94 (148)
Q Consensus        52 ~~~~i~iPin~~~~HW~l~~v~~~~~~i~~~DSl~~~~~~~~~-------------------------------------   94 (148)
                      ++.++.+|.+- .+||.++++|.+++-+..|||.|....+.-.                                     
T Consensus       230 ~~RyvmFgfcY-~~Hwkc~IfDk~~~~v~FydSgG~~P~efhhy~nfyFysfs~gfn~n~~~~s~l~n~n~dIDVLfrfF  308 (423)
T PF03290_consen  230 KKRYVMFGFCY-MSHWKCCIFDKEKKIVYFYDSGGNIPEEFHHYKNFYFYSFSDGFNRNNKSTSNLDNENCDIDVLFRFF  308 (423)
T ss_pred             cccEEEeeeee-hhcceEEEEeccccEEEEEcCCCCCHHHcCcCCceEEEEccCccccCCCcccccccccCchHHHHHHH
Confidence            57899999999 9999999999999999999999876432100                                     


Q ss_pred             ------------cCCCCCCCCCchHHHHHHHHHHhcCCC
Q psy12908         95 ------------DVPQQQNSSDCGVFTSTFAEYLSRNAD  121 (148)
Q Consensus        95 ------------~~p~Q~n~~DCGvfv~~~~~~~~~~~~  121 (148)
                                  ----|-...+||+|++.||-.....+|
T Consensus       309 ~d~f~~~~gciNvevnQl~eseCGMF~~iFm~~c~~~pp  347 (423)
T PF03290_consen  309 EDSFGVKYGCINVEVNQLLESECGMFISIFMILCTLTPP  347 (423)
T ss_pred             HhhcccceeEEEhhhhhhcccccchHHHHHHHHHHccCc
Confidence                        223577889999999999987776655

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C57 (clan CE). The type example is vaccinia virus I7 processing peptidase (vaccinia virus); protein I7 is expressed in the late phase of infection [].

>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.19  E-value=0.00036  Score=51.58  Aligned_cols=62  Identities=19%  Similarity=0.346  Sum_probs=38.2

Q ss_pred             EeEEe-----cCceEEEEEEcccCCeeEEecCCCCCCccccc-----------------------------cCCCCCCCC
Q psy12908         58 VPIHV-----QKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN-----------------------------DVPQQQNSS  103 (148)
Q Consensus        58 iPin~-----~~~HW~l~~v~~~~~~i~~~DSl~~~~~~~~~-----------------------------~~p~Q~n~~  103 (148)
                      ..||.     |+.||.....|+..++++.+|+.+=++.+-.+                             +.-|=+++-
T Consensus        22 AIVNT~~retGGvHWlA~Aw~P~s~t~YmFDPfGfsd~~L~qiY~FeYe~llrRSAL~~~~dRCv~LvkstqtVQ~p~Sa  101 (183)
T PF00770_consen   22 AIVNTGGRETGGVHWLAFAWDPRSRTFYMFDPFGFSDQKLKQIYQFEYEGLLRRSALSSTPDRCVTLVKSTQTVQCPCSA  101 (183)
T ss_dssp             EEEESS-TTT--S-EEEEEEETTTTEEEEE-TT---HHHHHHHH----HHHHHHHHHHH-TTSEEEEEEE-EE-S-TT--
T ss_pred             EEEecCCcccCceeEEEEEecCCcceEEEeCCCCCCHHHHHHHHhhhHHHHHHHHhhcCCCCceEEEEeccceeeccCch
Confidence            34566     68999999999999999999999976543111                             233335788


Q ss_pred             CchHHHHHHHHHHhcC
Q psy12908        104 DCGVFTSTFAEYLSRN  119 (148)
Q Consensus       104 DCGvfv~~~~~~~~~~  119 (148)
                      -||.|.|.|..++..-
T Consensus       102 aCGLFC~lFL~aF~~~  117 (183)
T PF00770_consen  102 ACGLFCCLFLHAFVHY  117 (183)
T ss_dssp             -HHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHhC
Confidence            9999999999988754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.

>PRK14848 deubiquitinase SseL; Provisional

Probab=96.84  E-value=0.0035  Score=49.21  Aligned_cols=67  Identities=18%  Similarity=0.230  Sum_probs=42.2

Q ss_pred             CCEEEEeEEecCceEEEEEEccc--CCeeEEecCCCCCCccccc--------------------cCCCCCC-CCCchHHH
Q psy12908         53 YDILLVPIHVQKIHWCLATIDFR--KKCLTYYDSMAGPDRGCLN--------------------DVPQQQN-SSDCGVFT  109 (148)
Q Consensus        53 ~~~i~iPin~~~~HW~l~~v~~~--~~~i~~~DSl~~~~~~~~~--------------------~~p~Q~n-~~DCGvfv  109 (148)
                      +..-++|||. ++||.|+++-.-  +.+-.+|.|++.-.....+                    ..-.|.| ...||.||
T Consensus       188 ~~nevF~INt-g~HWil~~~~Ki~~kiKC~iFNs~~~l~eNs~~~ii~~ak~ag~~~e~di~fIe~nLQqnVpngCGlFv  266 (317)
T PRK14848        188 SHNEVFLINT-GDHWLLCLFYKLAEKIKCLIFNTYYDLNENTKQEIIEAAKIAGISENEDVNFIETNLQNNVPNGCGLFC  266 (317)
T ss_pred             CcceEEEecC-CCcEEEEEhHHhhhhceEEEeecHhhhhhhHHHHHHHHHHhhCcccCCceEEeehhhhhhCCCcchHHH
Confidence            3445599998 999999875321  2334556666543221100                    3334444 56799999


Q ss_pred             HHHHHHHhcCC
Q psy12908        110 STFAEYLSRNA  120 (148)
Q Consensus       110 ~~~~~~~~~~~  120 (148)
                      |.+++.+..+.
T Consensus       267 ~~aIq~l~~~~  277 (317)
T PRK14848        267 YHTIQLLSNAG  277 (317)
T ss_pred             HHHHHHHHhcc
Confidence            99999887653

>PRK11836 deubiquitinase; Provisional

Probab=96.65  E-value=0.0077  Score=48.27  Aligned_cols=68  Identities=21%  Similarity=0.399  Sum_probs=41.9

Q ss_pred             cCCCEEEEeEEecCceEEEEEEcc--------cCCeeEEecCCCCCCcc---c--------------------cc-----
Q psy12908         51 FSYDILLVPIHVQKIHWCLATIDF--------RKKCLTYYDSMAGPDRG---C--------------------LN-----   94 (148)
Q Consensus        51 ~~~~~i~iPin~~~~HW~l~~v~~--------~~~~i~~~DSl~~~~~~---~--------------------~~-----   94 (148)
                      +-++.-++|||. ++||.|+++-.        ++.+-.+|.|+..-...   .                    .+     
T Consensus       217 ~~k~~elFpINt-g~HWil~~l~Ki~~~~~~~ekiKC~IFNs~~~l~~d~~~t~q~ii~a~~~~~~~~~~~~~ik~~~~e  295 (403)
T PRK11836        217 WPKEVQLFPINT-GGHWILVSLQKIVNEKNNTQQIKCVIFNSLRALGHDKENSLKRVINSFNSELMGEMSNNNIKVHLTE  295 (403)
T ss_pred             CcccceEEEecC-CCcEEEEEeHHhhhcccccceeEEEEEecHhhhccchhhHHHHHHHhhhhhhhhhcchhhhcccccC
Confidence            346788899998 99999987521        22344556666543221   0                    00     


Q ss_pred             ------cCCCCC-CCCCchHHHHHHHHHHhcC
Q psy12908         95 ------DVPQQQ-NSSDCGVFTSTFAEYLSRN  119 (148)
Q Consensus        95 ------~~p~Q~-n~~DCGvfv~~~~~~~~~~  119 (148)
                            ....|. =...||.|||+.+..++..
T Consensus       296 ~ei~fie~dLQq~vpngCGlFv~~a~Qe~i~q  327 (403)
T PRK11836        296 PEIIFLHADLQQYLSQSCGAFVCMAAQEVIEQ  327 (403)
T ss_pred             CceEEEechhhhcCCCccceehHHHHHHHHHH
Confidence                  333343 4678999999888754433

>KOG0778|consensus

Probab=96.15  E-value=0.0041  Score=53.22  Aligned_cols=38  Identities=55%  Similarity=1.215  Sum_probs=34.2

Q ss_pred             CCeeeeceEeeccccCceEEEEEeeeecchhhhccCCCC
Q psy12908          1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMA   39 (148)
Q Consensus         1 ~~~~~~d~~l~p~~~~~~~~~~~tff~~~L~~~~~~~~~   39 (148)
                      ||||++|+|++|+|. ++||++..+...+-...++++..
T Consensus       385 v~if~~d~i~vPIH~-~vHW~l~vid~r~k~i~y~DS~~  422 (511)
T KOG0778|consen  385 VDIFDKDIIFVPIHL-GVHWCLAVIDLREKTIEYYDSLG  422 (511)
T ss_pred             cCccccceeEeeeec-CceEEEEEEEcccceEEEeeccC
Confidence            799999999999999 79999999999888887777665

>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp

Probab=91.05  E-value=0.95  Score=33.81  Aligned_cols=67  Identities=19%  Similarity=0.263  Sum_probs=45.5

Q ss_pred             CEEEEeEEecCceEEEEEEc-cc--CCeeEEecCCCCCCccc-c----------------------ccCCCCCCCCCchH
Q psy12908         54 DILLVPIHVQKIHWCLATID-FR--KKCLTYYDSMAGPDRGC-L----------------------NDVPQQQNSSDCGV  107 (148)
Q Consensus        54 ~~i~iPin~~~~HW~l~~v~-~~--~~~i~~~DSl~~~~~~~-~----------------------~~~p~Q~n~~DCGv  107 (148)
                      -..++|...++.|-+.+-|- ..  +..+..++|-.-..... +                      -.+..|+..+|||+
T Consensus        72 ~R~Iv~~~~~~~H~~a~Dvr~~~~~k~SlI~~Epa~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ie~diQkS~~dC~I  151 (177)
T PF03421_consen   72 WRAIVNLGGDGIHHVALDVRHTPNGKPSLIVFEPASFYGMKPALAGYTKLAEEARQKLLPNAKFAVIEMDIQKSPSDCGI  151 (177)
T ss_pred             eEEEEeCCCCCCcEEEEEEeecCCCCceEEEEccccccCCcchhhhHHHHHHHHHhccCCCcEEEEEecccccCcCcchh
Confidence            35567766667777766554 22  34688888874322110 1                      08899999999999


Q ss_pred             HHHHHHHHHhcCC
Q psy12908        108 FTSTFAEYLSRNA  120 (148)
Q Consensus       108 fv~~~~~~~~~~~  120 (148)
                      |.+.+|.......
T Consensus       152 FsLs~AkK~~~~~  164 (177)
T PF03421_consen  152 FSLSLAKKMYKED  164 (177)
T ss_pred             hHHHHHHHHhhcc
Confidence            9999998887543

causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=86.13  E-value=0.63  Score=40.19  Aligned_cols=41  Identities=39%  Similarity=0.794  Sum_probs=31.1

Q ss_pred             CCeeeeceEeeccccCceEEEEEeeeecchhhhccCCCCCCC
Q psy12908          1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPD   42 (148)
Q Consensus         1 ~~~~~~d~~l~p~~~~~~~~~~~tff~~~L~~~~~~~~~~~~   42 (148)
                      ||||+.|+|.+|+|. ..||++.-+.-++....++++.+.+.
T Consensus       448 ~dif~~k~I~iPIni-~~HW~l~II~~~~~~i~~~DSLan~~  488 (578)
T COG5160         448 TDIFSKKYIFIPINI-SYHWFLAIIDNPKKNILYFDSLANTH  488 (578)
T ss_pred             cCccccceEEEEecc-cceEEEEEeecCcceeEEecccccCc
Confidence            699999999999998 68998887776655555555544444

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=84.84  E-value=0.77  Score=39.42  Aligned_cols=40  Identities=38%  Similarity=0.752  Sum_probs=30.0

Q ss_pred             CCeeeeceEeeccccCceEEEEEeeeecchhhhccCCCCCC
Q psy12908          1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGP   41 (148)
Q Consensus         1 ~~~~~~d~~l~p~~~~~~~~~~~tff~~~L~~~~~~~~~~~   41 (148)
                      +|+|++|+|++|+|. ..||++..+....-...++++..+.
T Consensus       364 v~Lfs~D~IFIPIh~-n~HWsLaVId~k~k~I~yyDSLgg~  403 (490)
T PLN03189        364 YHLIDCDKIFVPIHQ-EIHWTLAVINKKDQKFQYLDSLKGR  403 (490)
T ss_pred             cccccCceEEeeeec-CCeeEEEEEEcCCCeEEEEeCCCCC
Confidence            478999999999997 5899999887765555445554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	148
2ckg_A	225	The Structure Of Senp1 Sumo-2 Co-Complex Suggests A		2e-21
2iyc_A	226	Senp1 Native Structure Length = 226		4e-21
2xph_A	238	Crystal Structure Of Human Senp1 With The Bound Cob		5e-21
2xre_A	230	Detection Of Cobalt In Previously Unassigned Human		5e-21
2iy0_A	226	Senp1 (Mutant) Sumo1 Rangap Length = 226		3e-20
2g4d_A	205	Crystal Structure Of Human Senp1 Mutant (C603s) In		4e-20
1tgz_A	226	Structure Of Human Senp2 In Complex With Sumo-1 Len		7e-19
2io0_A	232	Crystal Structure Of Human Senp2 In Complex With Pr		5e-18
1euv_A	221	X-Ray Structure Of The C-Terminal Ulp1 Protease Dom		2e-05
2hkp_A	221	Sumo Protease Ulp1 With The Catalytic Cysteine Oxid		2e-04

>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 75/135 (55%), Gaps = 32/135 (23%)
Query: 43  RGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAG-PDRGCL-------- 93
           R    VD+FS DILLVPIH+  +HWCLA +DFRKK +TYYDSM G  +  C         
Sbjct: 93  RWTKKVDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQ 151
Query: 94  ---------------------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPY 132
                                + +PQQ N SDCG+F   +A+ ++++  I    Q+ MPY
Sbjct: 152 ESIDKKRKEFDTNGWQLFSKKSQIPQQMNGSDCGMFACKYADCITKDRPI-NFTQQHMPY 210
Query: 133 YRKKMMAEILSKKLL 147
           +RK+M+ EIL +KLL
Sbjct: 211 FRKRMVWEILHRKLL 225

>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 85/148 (57%), Gaps = 20/148 (13%)
Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAG-PDRGCLNVDLFSYDILLVP 59
           VD+FS DILLVPIH+  +HWCL  +DFRKK +TYYDSM G  +  C         ILL  
Sbjct: 98  VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEAC--------RILLQY 148
Query: 60  IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
           +  +       +ID ++K            +    ++PQQ N SDCG+F   +A+ ++++
Sbjct: 149 LKQE-------SIDKKRKEFDTNGWQLFSKKS--QEIPQQMNGSDCGMFACKYADCITKD 199
Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
             I    Q+ MPY+RK+M+ EIL +KLL
Sbjct: 200 RPI-NFTQQHMPYFRKRMVWEILHRKLL 226

>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 82/148 (55%), Gaps = 20/148 (13%)
Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAG-PDRGCLNVDLFSYDILLVP 59
           VD+FS DILLVPIH+  +HWCL  +DFRKK +TYYDSM G  +  C         ILL  
Sbjct: 110 VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEAC--------RILLQY 160
Query: 60  IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
           +  + I       D     L    S          ++PQQ N SDCG+F   +A+ ++++
Sbjct: 161 LKQESIDKKRKEFDTNGWQLFSKKS---------QEIPQQMNGSDCGMFACKYADCITKD 211
Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
             I    Q+ MPY+RK+M+ EIL +KLL
Sbjct: 212 RPI-NFTQQHMPYFRKRMVWEILHRKLL 238

>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 85/148 (57%), Gaps = 20/148 (13%)
Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAG-PDRGCLNVDLFSYDILLVP 59
           VD+FS DILLVPIH+  +HWCL  +DFRKK +TYYDSM G  +  C         ILL  
Sbjct: 102 VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEAC--------RILLQY 152
Query: 60  IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
           +  +       +ID ++K            +    ++PQQ N SDCG+F   +A+ ++++
Sbjct: 153 LKQE-------SIDKKRKEFDTNGWQLFSKKS--QEIPQQMNGSDCGMFACKYADCITKD 203
Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
             I    Q+ MPY+RK+M+ EIL +KLL
Sbjct: 204 RPI-NFTQQHMPYFRKRMVWEILHRKLL 230

>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 20/148 (13%)
Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAG-PDRGCLNVDLFSYDILLVP 59
           VD+FS DILLVPIH+  +HWCL  +DFRKK +TYYDSM G  +  C         ILL  
Sbjct: 98  VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEAC--------RILLQY 148
Query: 60  IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
           +  +       +ID ++K            +    ++PQQ N SD G+F   +A+ ++++
Sbjct: 149 LKQE-------SIDKKRKEFDTNGWQLFSKKS--QEIPQQMNGSDAGMFACKYADCITKD 199
Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
             I    Q+ MPY+RK+M+ EIL +KLL
Sbjct: 200 RPI-NFTQQHMPYFRKRMVWEILHRKLL 226

>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 20/148 (13%)
Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAG-PDRGCLNVDLFSYDILLVP 59
           VD+FS DILLVPIH+  +HWCL  +DFRKK +TYYDSM G  +  C         ILL  
Sbjct: 77  VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEAC--------RILLQY 127
Query: 60  IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
           +  +       +ID ++K            +    ++PQQ N SD G+F   +A+ ++++
Sbjct: 128 LKQE-------SIDKKRKEFDTNGWQLFSKKS--QEIPQQMNGSDSGMFACKYADCITKD 178
Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
             I    Q+ MPY+RK+M+ EIL +KLL
Sbjct: 179 RPI-NFTQQHMPYFRKRMVWEILHRKLL 205

>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226

Iteration: 1
 Score = 89.4 bits (220), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 71/136 (52%), Gaps = 33/136 (24%)
Query: 43  RGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMA---------------- 86
           R    V+LF  +I+LVPIH +K+HW L  ID RKKCL Y DSM                 
Sbjct: 93  RWTKGVNLFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQD 151
Query: 87  ------GPDRGCL---------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMP 131
                   D   L         +++PQQ N SDCG+FT  +A+Y+SR+  I    Q  MP
Sbjct: 152 ESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPI-TFTQHQMP 210
Query: 132 YYRKKMMAEILSKKLL 147
            +RKKM+ EIL ++LL
Sbjct: 211 LFRKKMVWEILHQQLL 226

>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232

Iteration: 1
 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 33/136 (24%)
Query: 43  RGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMA---------------- 86
           R    V+LF  +I+LVPIH +K+HW L  ID RKKCL Y DSM                 
Sbjct: 99  RWTKGVNLFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQD 157
Query: 87  ------GPDRGCL---------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMP 131
                   D   L         +++PQQ N SD G+FT  +A+Y+SR+  I    Q  MP
Sbjct: 158 ESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDSGMFTCKYADYISRDKPI-TFTQHQMP 216
Query: 132 YYRKKMMAEILSKKLL 147
            +RKKM+ EIL ++LL
Sbjct: 217 LFRKKMVWEILHQQLL 232

>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In Complex With Smt3, The Yeast Ortholog Of Sumo Length = 221

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 24/116 (20%)
Query: 7   DILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMA-GPDRGCLNVDLFSYDILLVPIHVQKI 65
           D +  PI++ + HW L  ID +KK + Y DS++ GP       +  S+ IL         
Sbjct: 102 DKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGP-------NAMSFAIL--------- 145
Query: 66  HWCLATIDFRKKCLTYYDSMAGPDRGCLN-DVPQQQNSSDCGVFTSTFAEYLSRNA 120
                  D +K  +       G D   ++ D PQQ N  DCG++      Y S +A
Sbjct: 146 ------TDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADA 195

>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To A Sulfenic Acid Length = 221

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 24/116 (20%)
Query: 7   DILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMA-GPDRGCLNVDLFSYDILLVPIHVQKI 65
           D +  PI++ + HW L  ID +KK + Y DS++ GP       +  S+ IL         
Sbjct: 102 DKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGP-------NAMSFAIL--------- 145
Query: 66  HWCLATIDFRKKCLTYYDSMAGPDRGCLN-DVPQQQNSSDCGVFTSTFAEYLSRNA 120
                  D +K  +       G D   ++ D PQQ N  D G++      Y S +A
Sbjct: 146 ------TDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDXGIYVCMNTLYGSADA 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	2e-25
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	2e-23
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	2e-21
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	4e-17
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	1e-13
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	2e-10

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238

 Score = 96.0 bits (238), Expect = 2e-25
 Identities = 56/147 (38%), Positives = 79/147 (53%), Gaps = 18/147 (12%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           VD+FS DILLVPIH   +HWCL  +DFRKK +TYYDSM G +     + L  Y   L   
Sbjct: 110 VDVFSVDILLVPIH-LGVHWCLAVVDFRKKNITYYDSMGGINNEACRI-LLQY---LKQE 164

Query: 61  HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
            + K      T  ++                   ++PQQ N SDCG+F   +A+ ++++ 
Sbjct: 165 SIDKKRKEFDTNGWQLFSKKS------------QEIPQQMNGSDCGMFACKYADCITKDR 212

Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKLL 147
                 Q+ MPY+RK+M+ EIL +KLL
Sbjct: 213 -PINFTQQHMPYFRKRMVWEILHRKLL 238

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221

 Score = 90.6 bits (224), Expect = 2e-23
 Identities = 31/147 (21%), Positives = 46/147 (31%), Gaps = 28/147 (19%)

Query: 27  FRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMA 86
           F                      +   D +  PI++ + HW L  ID +KK + Y DS++
Sbjct: 75  FYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLS 134

Query: 87  GPDRGCLN---------------------------DVPQQQNSSDCGVFTSTFAEYLSRN 119
                                              D PQQ N  DCG++      Y S +
Sbjct: 135 NGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSAD 194

Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKL 146
           A       KD    R+ +   IL+  L
Sbjct: 195 AP-LDFDYKDAIRMRRFIAHLILTDAL 220

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226

 Score = 85.3 bits (210), Expect = 2e-21
 Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 18/147 (12%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           V+LF  +I+LVPIH +K+HW L  ID RKKCL Y DSM         + L  Y   L   
Sbjct: 98  VNLFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEI-LLQY---LQDE 152

Query: 61  HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
              K +  L  +++    +  ++            +PQQ N SDCG+FT  +A+Y+SR+ 
Sbjct: 153 SKTKRNSDLNLLEWTHHSMKPHE------------IPQQLNGSDCGMFTCKYADYISRDK 200

Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKLL 147
                 Q  MP +RKKM+ EIL ++LL
Sbjct: 201 P-ITFTQHQMPLFRKKMVWEILHQQLL 226

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186

 Score = 73.1 bits (179), Expect = 4e-17
 Identities = 23/123 (18%), Positives = 32/123 (26%), Gaps = 22/123 (17%)

Query: 30  KCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKK---CLTYYDSMA 86
             L+  D         L        I+ +PI+    HW L  +D R K      +YDSMA
Sbjct: 39  TMLSSADPDQQARAQRLLAGDDIPPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMA 98

Query: 87  GPDRGCLN-------------------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQ 127
             D                         +  Q +    G    T  E L+          
Sbjct: 99  QKDPQQRYLADMAAYHLGLDYQQTHEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDGTFDY 158

Query: 128 KDM 130
              
Sbjct: 159 AGG 161

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212

 Score = 64.4 bits (156), Expect = 1e-13
 Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 35/132 (26%)

Query: 47  NVDLFSYDILLVPIH------VQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN------ 94
            +DL +  ++ + I+          HW L      K    +YDS +  +           
Sbjct: 77  PLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKL 136

Query: 95  ----------------DVPQQQNSSDCGVFTSTFAEYLSRN-------ADIFKIKQKDMP 131
                             P QQNS DCG++     E L +N       + +  +    + 
Sbjct: 137 EAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYIT 196

Query: 132 YYRKKMMAEILS 143
             R +    I +
Sbjct: 197 KKRGEWKDLIAT 208

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323

 Score = 56.3 bits (134), Expect = 2e-10
 Identities = 28/198 (14%), Positives = 55/198 (27%), Gaps = 56/198 (28%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           +++F+ D + VP++ +  HW L  I F       Y+                 D   +  
Sbjct: 116 INIFNKDYIFVPVN-ESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDN 174

Query: 61  HVQKIH---------------WCLATIDFRKKCLTYYDSMAGPD---------------- 89
            ++                    +     ++ C+   DS+                    
Sbjct: 175 DLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEW 234

Query: 90  ---------------RGCLNDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIK-------- 126
                                VP+Q NSSDCGV+   + E   ++  +            
Sbjct: 235 EVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEKWF 294

Query: 127 -QKDMPYYRKKMMAEILS 143
            +  +   R+ +   IL 
Sbjct: 295 PRHVIKTKREDIRELILK 312

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	100.0
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	100.0
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	100.0
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	99.96
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	99.96
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.94
4ekf_A	204	Adenain; alpha and beta protein (A+B), hydrolase;	97.38
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	92.7
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	88.02
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	87.48
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	86.59
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	83.02
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	80.33

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=100.00  E-value=1.6e-37  Score=238.16  Aligned_cols=124  Identities=44%  Similarity=0.747  Sum_probs=114.2

Q ss_pred             EEEEEeeeecchhhhccCCCCCCCCCccccCccCCCEEEEeEEecCceEEEEEEcccCCeeEEecCCCCCCccc------
Q psy12908         19 HWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGC------   92 (148)
Q Consensus        19 ~~~~~tff~~~L~~~~~~~~~~~~~w~~~~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~i~~~DSl~~~~~~~------   92 (148)
                      .++||||||++|..   .|++++++|+++.+++++++|++|||. ++||+|++||++++++.+||||++.+...      
T Consensus        72 ~~~f~s~f~~~l~~---~~~~~v~~w~~~~~l~~~~~i~iPin~-~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~l~~  147 (226)
T 1th0_A           72 LHVFSTFFYPKLKS---GGYQAVKRWTKGVNLFEQEIILVPIHR-KVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQ  147 (226)
T ss_dssp             EEECCTTHHHHHHH---HTGGGTGGGGTTCCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHH
T ss_pred             EEEEeHHHHHHhhh---cccHHHHHHhhcCCcccCCEEEEeEEe-CcEEEEEEEEcCCCceEEEcCCCCCchHHHHHHHH
Confidence            45699999999998   578899999999999999999999999 99999999999999999999999875321      


Q ss_pred             -------------------------cccCCCCCCCCCchHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHhCCcC
Q psy12908         93 -------------------------LNDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL  147 (148)
Q Consensus        93 -------------------------~~~~p~Q~n~~DCGvfv~~~~~~~~~~~~~~~~~~~~~~~~R~~i~~~ll~~~l~  147 (148)
                                               ..++|||.||+|||||||+||++++.|.++ +|+|++|+.+|++|+.||++++||
T Consensus       148 ~l~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~-~f~q~dm~~~R~~~~~ei~~~~l~  226 (226)
T 1th0_A          148 YLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPI-TFTQHQMPLFRKKMVWEILHQQLL  226 (226)
T ss_dssp             HHHHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCC-CCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHhcCCCCCcccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCC-ccChhhHHHHHHHHHHHHHhCCcC
Confidence                                     127999999999999999999999999999 999999999999999999999997

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=100.00  E-value=2.7e-37  Score=238.68  Aligned_cols=124  Identities=46%  Similarity=0.826  Sum_probs=114.2

Q ss_pred             EEEEEeeeecchhhhccCCCCCCCCCccccCccCCCEEEEeEEecCceEEEEEEcccCCeeEEecCCCCCCccc------
Q psy12908         19 HWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGC------   92 (148)
Q Consensus        19 ~~~~~tff~~~L~~~~~~~~~~~~~w~~~~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~i~~~DSl~~~~~~~------   92 (148)
                      .+++|||||++|..   .||+++++|+++.++++++++++|||. ++||+|++||.+++++.+||||++.+...      
T Consensus        84 ~~~f~sff~~~l~~---~~~~~v~~w~~~~~l~~~~~i~iPin~-~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~l~~  159 (238)
T 2xph_A           84 VHAFNTFFFTKLKT---AGYQAVKRWTKKVDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQ  159 (238)
T ss_dssp             EEECCTTTTHHHHT---TCHHHHTTTTTTCCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHH
T ss_pred             eeeeecHHHHHhhh---cccHHHHHHhccCCcccCCEEEEcccC-CCceEEEEEEcccceEEEeecccCCCHHHHHHHHH
Confidence            34699999999998   678899999999999999999999999 79999999999999999999999875321      


Q ss_pred             -------------------------cccCCCCCCCCCchHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHhCCcC
Q psy12908         93 -------------------------LNDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL  147 (148)
Q Consensus        93 -------------------------~~~~p~Q~n~~DCGvfv~~~~~~~~~~~~~~~~~~~~~~~~R~~i~~~ll~~~l~  147 (148)
                                               ..++|||.||+|||||||+||++++.+.++ +|+|++|+.+|++|+.||++++||
T Consensus       160 ~L~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~-~f~q~dm~~~R~~m~~eil~~~ll  238 (238)
T 2xph_A          160 YLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPI-NFTQQHMPYFRKRMVWEILHRKLL  238 (238)
T ss_dssp             HHHHHHHHHHCSCCCCTTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCC-CCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHhcCCCcCcccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCC-CcChhhHHHHHHHHHHHHHhCCCC
Confidence                                     127999999999999999999999999998 999999999999999999999997

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=100.00  E-value=2.5e-35  Score=225.42  Aligned_cols=123  Identities=27%  Similarity=0.438  Sum_probs=111.1

Q ss_pred             EEEEeeeecchhhhccCCCCCCCCCcc--ccCccCCCEEEEeEEecCceEEEEEEcccCCeeEEecCCCCCCcc----cc
Q psy12908         20 WCLTTIDFRKKCLTYYDSMAGPDRGCL--NVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRG----CL   93 (148)
Q Consensus        20 ~~~~tff~~~L~~~~~~~~~~~~~w~~--~~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~i~~~DSl~~~~~~----~~   93 (148)
                      ++|+||||++|..   .||++++||++  +.++++++++++|||.+++||+|++||++++++.+||||++....    .+
T Consensus        69 ~~f~s~f~~~l~~---~~~~~v~rw~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~  145 (221)
T 1euv_A           69 VAFNSFFYTNLSE---RGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAIL  145 (221)
T ss_dssp             EECCTHHHHHHHH---HTGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHH
T ss_pred             EEEEcHHHHHhhh---hccHHHHHHHHhccCCcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcchHHHHH
Confidence            4599999999998   67889999998  579999999999999977999999999999999999999864321    00


Q ss_pred             -----------------------ccCCCCCCCCCchHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHhCCc
Q psy12908         94 -----------------------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKL  146 (148)
Q Consensus        94 -----------------------~~~p~Q~n~~DCGvfv~~~~~~~~~~~~~~~~~~~~~~~~R~~i~~~ll~~~l  146 (148)
                                             .++|||.||+|||||||+||++++.|.++ +|++++|+.+|++|+.+|++++|
T Consensus       146 ~~l~~~l~~e~~~~~~~~~~~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l-~f~~~d~~~~R~~i~~~Il~~~l  220 (221)
T 1euv_A          146 TDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPL-DFDYKDAIRMRRFIAHLILTDAL  220 (221)
T ss_dssp             HHHHHHHHHHTTSSSCTTCEEEEECCCCCSSSSTHHHHHHHHHHHHHTTCCC-CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhcCCCceEeecCCCCCCCCcCHHHHHHHHHHHHhCCCCC-CcCHHHHHHHHHHHHHHHHhccC
Confidence                                   08999999999999999999999999999 99999999999999999999886

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=99.96  E-value=1.7e-31  Score=202.75  Aligned_cols=121  Identities=21%  Similarity=0.200  Sum_probs=102.5

Q ss_pred             ceEEEEE---eeeecchhhhccCCCCCCCCCccccCccCCCEEEEeEEe------cCceEEEEEEcccCCeeEEecCCCC
Q psy12908         17 KIHWCLT---TIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHV------QKIHWCLATIDFRKKCLTYYDSMAG   87 (148)
Q Consensus        17 ~~~~~~~---tff~~~L~~~~~~~~~~~~~w~~~~~l~~~~~i~iPin~------~~~HW~l~~v~~~~~~i~~~DSl~~   87 (148)
                      +. ++++   |||+..+.     +++++++|+++.+++++++|++|||.      +++||+|++|+++++++.+||||++
T Consensus        50 ~~-~~~~p~~s~f~~~~~-----~~~~v~~~~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~  123 (212)
T 2bkr_A           50 HV-SFISPEVTQFIKCTS-----NPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSR  123 (212)
T ss_dssp             TE-EEECHHHHHHHHHCC-----CHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTT
T ss_pred             cE-EEEChHHHHHHHhCC-----CHHHHHHHhcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCC
Confidence            44 4599   99995543     24579999999999999999999996      5899999999999999999999998


Q ss_pred             CCcccc----------------------ccCCCCCCCCCchHHHHHHHHHHhcCC----CC---CCCCCCChHHHHHHHH
Q psy12908         88 PDRGCL----------------------NDVPQQQNSSDCGVFTSTFAEYLSRNA----DI---FKIKQKDMPYYRKKMM  138 (148)
Q Consensus        88 ~~~~~~----------------------~~~p~Q~n~~DCGvfv~~~~~~~~~~~----~~---~~~~~~~~~~~R~~i~  138 (148)
                      .+...+                      .++|||.||+|||||||+||++++.+.    +.   ..+++++++.+|++|+
T Consensus       124 ~n~~~~~~l~~~l~~~l~~~~~~~~~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~i~  203 (212)
T 2bkr_A          124 SNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWK  203 (212)
T ss_dssp             TTHHHHHHHHHHHHHHHSCTTCCCCEEECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCccccceEeECCCCCCCCCCcHHHHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHH
Confidence            765321                      189999999999999999999999875    11   2688999999999999


Q ss_pred             HHHHh
Q psy12908        139 AEILS  143 (148)
Q Consensus       139 ~~ll~  143 (148)
                      ..|.+
T Consensus       204 ~lI~~  208 (212)
T 2bkr_A          204 DLIAT  208 (212)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=99.96  E-value=3.5e-30  Score=206.02  Aligned_cols=125  Identities=22%  Similarity=0.389  Sum_probs=102.8

Q ss_pred             ceEEEEEeeeecchhhhcc-------------CCCCCCCCCccccCccCCCEEEEeEEecCceEEEEEEcccC-------
Q psy12908         17 KIHWCLTTIDFRKKCLTYY-------------DSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRK-------   76 (148)
Q Consensus        17 ~~~~~~~tff~~~L~~~~~-------------~~~~~~~~w~~~~~l~~~~~i~iPin~~~~HW~l~~v~~~~-------   76 (148)
                      ++| +||||||++|...+.             .+|++|+||++++|||++++|+||||. +.||+|++|+.+.       
T Consensus        73 r~h-~FnSFFy~kL~~~~~~~~~~~~~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~-~~HW~LaVI~~P~~~~~~~~  150 (323)
T 3eay_A           73 RSH-IFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNE-SSHWYLAVICFPWLEEAVYE  150 (323)
T ss_dssp             TEE-ECCTHHHHHHSCC--------CCSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEE-TTEEEEEEEECTTCSSCBCC
T ss_pred             cEE-EEchHHHHHHHhcccccccccccchhHHHHHHHHHHHHhhcccccCCEEEEecCC-CCceEEEEEecCCccccccc
Confidence            455 699999999987431             257899999999999999999999999 9999999999863       


Q ss_pred             -------------------------------------------------------CeeEEecCCCCCCc-cccc------
Q psy12908         77 -------------------------------------------------------KCLTYYDSMAGPDR-GCLN------   94 (148)
Q Consensus        77 -------------------------------------------------------~~i~~~DSl~~~~~-~~~~------   94 (148)
                                                                             .+|.+||||++... ..++      
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL  230 (323)
T 3eay_A          151 DFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYL  230 (323)
T ss_dssp             -------------------------------------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHH
Confidence                                                                   15899999998642 1110      


Q ss_pred             ------------------------cCCCCCCCCCchHHHHHHHHHHhcCCCC---------CCCCCCChHHHHHHHHHHH
Q psy12908         95 ------------------------DVPQQQNSSDCGVFTSTFAEYLSRNADI---------FKIKQKDMPYYRKKMMAEI  141 (148)
Q Consensus        95 ------------------------~~p~Q~n~~DCGvfv~~~~~~~~~~~~~---------~~~~~~~~~~~R~~i~~~l  141 (148)
                                              .+|+|.|++|||+|||+|+++++.+.+.         .+|++.++...|..|..-|
T Consensus       231 ~~E~~~k~~~~~~f~~~~~~~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~~~~~~wf~~~~i~~kR~ei~~LI  310 (323)
T 3eay_A          231 EVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELI  310 (323)
T ss_dssp             HHHHHHHHSSCCCCCTTTSCEECCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCSSCBCTTSSCHHHHHTHHHHHHHHH
T ss_pred             HHHHHhhcCCCcCCCHhHceeccCCCCCcCCCCcHHHHHHHHHHHHHhCCccccccccccccCCCHHHHHHHHHHHHHHH
Confidence                                    7999999999999999999999998765         1466778899999998766


Q ss_pred             Hh
Q psy12908        142 LS  143 (148)
Q Consensus       142 l~  143 (148)
                      .+
T Consensus       311 ~~  312 (323)
T 3eay_A          311 LK  312 (323)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.94  E-value=5.5e-29  Score=185.90  Aligned_cols=121  Identities=22%  Similarity=0.200  Sum_probs=91.6

Q ss_pred             eEEEEE---eeeecchhhhccCCCCCCCCCccccCccCCCEEEEeEEecCceEEEEEEcccCCee---EEecCCCCCCcc
Q psy12908         18 IHWCLT---TIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCL---TYYDSMAGPDRG   91 (148)
Q Consensus        18 ~~~~~~---tff~~~L~~~~~~~~~~~~~w~~~~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~i---~~~DSl~~~~~~   91 (148)
                      .| +++   |+|+.....   +++..+.+|++..++  +++|++|||.+++||+|++|+.+++++   .|||||++.+..
T Consensus        30 v~-f~~p~~~~~l~~~~~---~~~~~~~~~~~~~~~--~~~i~iPin~~~~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~  103 (186)
T 2oix_A           30 LH-FADSQVVTMLSSADP---DQQARAQRLLAGDDI--PPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQ  103 (186)
T ss_dssp             EE-ECCHHHHHHTTCSSH---HHHHHHHHHHHSTTS--CSEEEEEEEETTTEEEEEEEECSSTTSCEEEEECCCSSCCHH
T ss_pred             EE-EECHHHHHHHHhCCH---HHHHHHHHHcccccc--cCEEEEEEeCCCCccEEEEEECCCCeeeeeEEEcCCCCCCHH
Confidence            44 477   445544333   234456667665554  999999999988999999999999999   999999986532


Q ss_pred             c-------------------cccCCCCCCCCCchHHHHHHHHHHhcC----C--CCCCCCCCChHHHHHHHHHHHHhC
Q psy12908         92 C-------------------LNDVPQQQNSSDCGVFTSTFAEYLSRN----A--DIFKIKQKDMPYYRKKMMAEILSK  144 (148)
Q Consensus        92 ~-------------------~~~~p~Q~n~~DCGvfv~~~~~~~~~~----~--~~~~~~~~~~~~~R~~i~~~ll~~  144 (148)
                      .                   ..++|||.||+|||||||+||++++.+    .  .+..++++++...|++|...|.+.
T Consensus       104 ~~~l~~~l~~~l~~~~~~~~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~~  181 (186)
T 2oix_A          104 QRYLADMAAYHLGLDYQQTHEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQA  181 (186)
T ss_dssp             HHHHHHHHHHHTTCCGGGCEEECBCCCC--CCHHHHHHHHHHHHHHHHHHTCTTSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhCCCccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCccCCCcCCHHHHHHHHHHHHHHHHhc
Confidence            1                   017999999999999999999998754    2  223688899999999999888764

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=92.70  E-value=0.062  Score=42.70  Aligned_cols=30  Identities=30%  Similarity=0.634  Sum_probs=27.4

Q ss_pred             CCeeeeceEeeccccCceEEEEEeeeecchh
Q psy12908          1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKC   31 (148)
Q Consensus         1 ~~~~~~d~~l~p~~~~~~~~~~~tff~~~L~   31 (148)
                      ||+|++|+|++|+|. ..||++..+.++.+.
T Consensus       116 vdlf~kD~I~IPIn~-~~HW~LaVI~~P~~~  145 (323)
T 3eay_A          116 INIFNKDYIFVPVNE-SSHWYLAVICFPWLE  145 (323)
T ss_dssp             CCGGGCSEEEEEEEE-TTEEEEEEEECTTCS
T ss_pred             cccccCCEEEEecCC-CCceEEEEEecCCcc
Confidence            699999999999997 689999999998774

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=88.02  E-value=0.33  Score=35.98  Aligned_cols=38  Identities=34%  Similarity=0.720  Sum_probs=28.0

Q ss_pred             CCeeeeceEeeccccCceEEEEEeeeecchhhhccCCC
Q psy12908          1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSM   38 (148)
Q Consensus         1 ~~~~~~d~~l~p~~~~~~~~~~~tff~~~L~~~~~~~~   38 (148)
                      +|+|+.|+|++|.+.+..||++..+..+.-....+++.
T Consensus        96 ~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl  133 (221)
T 1euv_A           96 TQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSL  133 (221)
T ss_dssp             SCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSS
T ss_pred             CCcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecC
Confidence            58999999999999866899988776554443334443

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=87.48  E-value=0.35  Score=35.53  Aligned_cols=40  Identities=25%  Similarity=0.361  Sum_probs=29.7

Q ss_pred             CCeeeeceEeecccc------CceEEEEEeeeecchhhhccCCCCC
Q psy12908          1 VDLFSYDILLVPIHV------QKIHWCLTTIDFRKKCLTYYDSMAG   40 (148)
Q Consensus         1 ~~~~~~d~~l~p~~~------~~~~~~~~tff~~~L~~~~~~~~~~   40 (148)
                      +|+|+.|+|++|++.      ++.||++-.+..+.-....+++..+
T Consensus        78 ~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~  123 (212)
T 2bkr_A           78 LDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSR  123 (212)
T ss_dssp             GTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTT
T ss_pred             cccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCC
Confidence            589999999999995      5799999887766544434454443

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=86.59  E-value=0.42  Score=35.81  Aligned_cols=37  Identities=73%  Similarity=1.367  Sum_probs=27.4

Q ss_pred             CCeeeeceEeeccccCceEEEEEeeeecchhhhccCCC
Q psy12908          1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSM   38 (148)
Q Consensus         1 ~~~~~~d~~l~p~~~~~~~~~~~tff~~~L~~~~~~~~   38 (148)
                      +|+|+.|+|++|.+. +.||++..+.++.-....+++.
T Consensus       110 ~~l~~~~~i~iPin~-~~HW~L~vi~~~~~~i~~~DSl  146 (238)
T 2xph_A          110 VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM  146 (238)
T ss_dssp             CCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTT
T ss_pred             CCcccCCEEEEcccC-CCceEEEEEEcccceEEEeecc
Confidence            589999999999997 5899998876654433334443

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=83.02  E-value=0.76  Score=34.07  Aligned_cols=37  Identities=65%  Similarity=1.211  Sum_probs=27.5

Q ss_pred             CCeeeeceEeeccccCceEEEEEeeeecchhhhccCCC
Q psy12908          1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSM   38 (148)
Q Consensus         1 ~~~~~~d~~l~p~~~~~~~~~~~tff~~~L~~~~~~~~   38 (148)
                      +|+|+.|+|++|.+. +.||++-.+..+.-....+++.
T Consensus        98 ~~l~~~~~i~iPin~-~~HW~l~vi~~~~~~i~~~DSl  134 (226)
T 1th0_A           98 VNLFEQEIILVPIHR-KVHWSLVVIDLRKKCLKYLDSM  134 (226)
T ss_dssp             CCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTT
T ss_pred             CCcccCCEEEEeEEe-CcEEEEEEEEcCCCceEEEcCC
Confidence            589999999999997 6899988876554444334443

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=80.33  E-value=0.76  Score=33.19  Aligned_cols=35  Identities=40%  Similarity=0.620  Sum_probs=27.7

Q ss_pred             eceEeeccccCceEEEEEeeeecchhh---hccCCCCC
Q psy12908          6 YDILLVPIHVQKIHWCLTTIDFRKKCL---TYYDSMAG   40 (148)
Q Consensus         6 ~d~~l~p~~~~~~~~~~~tff~~~L~~---~~~~~~~~   40 (148)
                      +|+|++|+|.++.||.+-.+..+.-..   .++++..+
T Consensus        62 ~~~i~iPin~~~~HWsLlvi~~~~~~~~~~~~~DSl~~   99 (186)
T 2oix_A           62 PPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQ   99 (186)
T ss_dssp             CSEEEEEEEETTTEEEEEEEECSSTTSCEEEEECCCSS
T ss_pred             cCEEEEEEeCCCCccEEEEEECCCCeeeeeEEEcCCCC
Confidence            899999999877999999888776655   45565554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	2e-20
d1euva_	221	d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake	5e-20
d2iy1a1	225	d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H	2e-19
d2bkra1	212	d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN	1e-10

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 2e-20
 Identities = 53/147 (36%), Positives = 72/147 (48%), Gaps = 18/147 (12%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           V+LF  +I+LVPIH +K+HW L  ID RKKCL Y DSM         + L          
Sbjct: 98  VNLFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTK 156

Query: 61  HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
               ++    T    K                  ++PQQ N SDCG+FT  +A+Y+SR+ 
Sbjct: 157 RNSDLNLLEWTHHSMKPH----------------EIPQQLNGSDCGMFTCKYADYISRDK 200

Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKLL 147
                 Q  MP +RKKM+ EIL ++LL
Sbjct: 201 P-ITFTQHQMPLFRKKMVWEILHQQLL 226

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.2 bits (197), Expect = 5e-20
 Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 28/127 (22%)

Query: 47  NVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDV---------- 96
              +   D +  PI++ + HW L  ID +KK + Y DS++         +          
Sbjct: 95  KTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVME 154

Query: 97  -----------------PQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMA 139
                            PQQ N  DCG++      Y S +A       KD    R+ +  
Sbjct: 155 ESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADA-PLDFDYKDAIRMRRFIAH 213

Query: 140 EILSKKL 146
            IL+  L
Sbjct: 214 LILTDAL 220

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 2e-19
 Identities = 52/146 (35%), Positives = 75/146 (51%), Gaps = 18/146 (12%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           VD+FS DILLVPIH   +HWCL  +DFRKK +TYYDSM G +     +            
Sbjct: 98  VDVFSVDILLVPIH-LGVHWCLAVVDFRKKNITYYDSMGGINNEACRI------------ 144

Query: 61  HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
               +   L      KK   +  +          ++PQQ N SD G+F   +A+ ++++ 
Sbjct: 145 ----LLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDR 200

Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKL 146
                 Q+ MPY+RK+M+ EIL +KL
Sbjct: 201 -PINFTQQHMPYFRKRMVWEILHRKL 225

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 1e-10
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 35/132 (26%)

Query: 47  NVDLFSYDILLVPIH------VQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDV---- 96
            +DL +  ++ + I+          HW L      K    +YDS +  +      V    
Sbjct: 77  PLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKL 136

Query: 97  ------------------PQQQNSSDCGVFTSTFAEYLSRNADIF-------KIKQKDMP 131
                             P QQNS DCG++     E L +N            +    + 
Sbjct: 137 EAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYIT 196

Query: 132 YYRKKMMAEILS 143
             R +    I +
Sbjct: 197 KKRGEWKDLIAT 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	100.0
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	100.0
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	100.0
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	99.93
d1nlna_	203	Human adenovirus 2 proteinase, adenain {Mastadenov	97.29
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	82.2

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-34  Score=219.17  Aligned_cols=124  Identities=26%  Similarity=0.427  Sum_probs=112.1

Q ss_pred             EEEEEeeeecchhhhccCCCCCCCCCc--cccCccCCCEEEEeEEecCceEEEEEEcccCCeeEEecCCCCCCcccc---
Q psy12908         19 HWCLTTIDFRKKCLTYYDSMAGPDRGC--LNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCL---   93 (148)
Q Consensus        19 ~~~~~tff~~~L~~~~~~~~~~~~~w~--~~~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~i~~~DSl~~~~~~~~---   93 (148)
                      .++++|+|++.+..   .+++.+++|+  ++.++++++++++|||.+++||+|++||++++++.+||||++......   
T Consensus        68 ~~~~~s~f~~~l~~---~~~~~~~~w~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i  144 (221)
T d1euva_          68 TVAFNSFFYTNLSE---RGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAI  144 (221)
T ss_dssp             EEECCTHHHHHHHH---HTGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHHHHHH
T ss_pred             eEEeccHHHHhHhh---hchHHHHHHHHhcccchhhcceeEeeEecccceEEEEEeeccccceeeeccccCCCcHHHHHH
Confidence            45799999999998   6788999999  456899999999999998899999999999999999999987654310   


Q ss_pred             -c-----------------------cCCCCCCCCCchHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHhCCc
Q psy12908         94 -N-----------------------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKL  146 (148)
Q Consensus        94 -~-----------------------~~p~Q~n~~DCGvfv~~~~~~~~~~~~~~~~~~~~~~~~R~~i~~~ll~~~l  146 (148)
                       +                       ++|||+||+|||+|||+||++++.|.++ +|+|+||+++|++|+.+|+++.|
T Consensus       145 ~~~l~~~l~~~~~~~~~~~~~~~~~~~PqQ~N~~DCGvfvl~~~~~~~~~~~~-~~~q~d~~~~R~~i~~~il~~~l  220 (221)
T d1euva_         145 LTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPL-DFDYKDAIRMRRFIAHLILTDAL  220 (221)
T ss_dssp             HHHHHHHHHHHTTSSSCTTCEEEEECCCCCSSSSTHHHHHHHHHHHHHTTCCC-CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhhcCCCCeeeeccCCCCCCCCChHHHHHHHHHHHhCCCCC-ccCHHHHHHHHHHHHHHHHHhhc
Confidence             0                       8999999999999999999999999999 99999999999999999999886

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-34  Score=215.18  Aligned_cols=125  Identities=43%  Similarity=0.741  Sum_probs=114.8

Q ss_pred             eEEEEEeeeecchhhhccCCCCCCCCCccccCccCCCEEEEeEEecCceEEEEEEcccCCeeEEecCCCCCCcccc----
Q psy12908         18 IHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCL----   93 (148)
Q Consensus        18 ~~~~~~tff~~~L~~~~~~~~~~~~~w~~~~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~i~~~DSl~~~~~~~~----   93 (148)
                      ..++++|+|+..+..   .+++.+.+|.++.++++++++++|+|. ++||+|++|+.+++++.+|||+++.+....    
T Consensus        71 ~~~~~~~~f~~~l~~---~~~~~~~~~~~~~~l~~~~~i~iPin~-~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~i~  146 (226)
T d1th0a_          71 ALHVFSTFFYPKLKS---GGYQAVKRWTKGVNLFEQEIILVPIHR-KVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILL  146 (226)
T ss_dssp             CEEECCTTHHHHHHH---HTGGGTGGGGTTCCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHH
T ss_pred             ceEEecHHHHHHHhh---ccHHHHHHHHhccCcccCCEEEEeEEc-CCceEEEEEEeccceEEEeccccCCChHHHHHHH
Confidence            456799999999998   678899999999999999999999998 899999999999999999999998764311    


Q ss_pred             ---------------------------ccCCCCCCCCCchHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHhCCc
Q psy12908         94 ---------------------------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKL  146 (148)
Q Consensus        94 ---------------------------~~~p~Q~n~~DCGvfv~~~~~~~~~~~~~~~~~~~~~~~~R~~i~~~ll~~~l  146 (148)
                                                 ..+|||+||+|||+|||+||++++.+.++ +|+|++|+.+|++|+.||++++|
T Consensus       147 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pqQ~N~~DCGvfvl~~~~~~~~~~~~-~~tq~di~~~R~~i~~el~~~~l  225 (226)
T d1th0a_         147 QYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPI-TFTQHQMPLFRKKMVWEILHQQL  225 (226)
T ss_dssp             HHHHHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCC-CCCGGGHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhhCCCcCcccceeeeeccCCCCCCCCCCCHHHHHHHHHHHHhCCCCC-CcCHHHHHHHHHHHHHHHHHcCC
Confidence                                       07899999999999999999999999988 99999999999999999999999


Q ss_pred             C
Q psy12908        147 L  147 (148)
Q Consensus       147 ~  147 (148)
                      |
T Consensus       226 ~  226 (226)
T d1th0a_         226 L  226 (226)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-33  Score=211.48  Aligned_cols=124  Identities=44%  Similarity=0.782  Sum_probs=113.1

Q ss_pred             eEEEEEeeeecchhhhccCCCCCCCCCccccCccCCCEEEEeEEecCceEEEEEEcccCCeeEEecCCCCCCccccc---
Q psy12908         18 IHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN---   94 (148)
Q Consensus        18 ~~~~~~tff~~~L~~~~~~~~~~~~~w~~~~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~i~~~DSl~~~~~~~~~---   94 (148)
                      ..++++|+|+..+..   .+++.+++|+++.++++++++++|+|. ++||+|++|+++.+++.+|||+++.+.....   
T Consensus        71 ~~~~~~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~~I~iPin~-~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~  146 (225)
T d2iy1a1          71 SVHAFNTFFFTKLKT---AGYQAVKRWTKKVDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEACRILL  146 (225)
T ss_dssp             CEEECCTTHHHHHHH---SCGGGTGGGGTTCCGGGSSEEEEEEEC-SSCEEEEEEETTTTEEEEECTTCCCCHHHHHHHH
T ss_pred             ceEEeccHHHhhhcc---cCHHHHHHHHhccccccCCEEEEEEeC-CCCEEEEEEEeccceEEEEecCCCCchHHHHHHH
Confidence            345699999988877   778899999999999999999999998 8999999999999999999999987653210   


Q ss_pred             ----------------------------cCCCCCCCCCchHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHhCCc
Q psy12908         95 ----------------------------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKL  146 (148)
Q Consensus        95 ----------------------------~~p~Q~n~~DCGvfv~~~~~~~~~~~~~~~~~~~~~~~~R~~i~~~ll~~~l  146 (148)
                                                  .+|||.||+|||+|||+||++++.|.++ +|+|++|+.+|++|+.+|++++|
T Consensus       147 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pqQ~Ng~DCGvfvl~~~~~~~~~~~~-~~~q~~~~~~R~~~~~~l~~~~l  225 (225)
T d2iy1a1         147 QYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDRPI-NFTQQHMPYFRKRMVWEILHRKL  225 (225)
T ss_dssp             HHHHHHHHHHHSSCCCCTTCEEEECCTTTSCCCCSSSTHHHHHHHHHHHHHTTCCC-CCCGGGHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhccCccCcccceecccccccCCCCCCCCChHHHHHHHHHHHhCCCCC-CcCHHHHHHHHHHHHHHHHhCcC
Confidence                                        7899999999999999999999999998 89999999999999999999987

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-27  Score=177.44  Aligned_cols=124  Identities=20%  Similarity=0.146  Sum_probs=99.8

Q ss_pred             eEEEEEeeeecchhhhccCCCCCCCCCccccCccCCCEEEEeEEe------cCceEEEEEEcccCCeeEEecCCCCCCcc
Q psy12908         18 IHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHV------QKIHWCLATIDFRKKCLTYYDSMAGPDRG   91 (148)
Q Consensus        18 ~~~~~~tff~~~L~~~~~~~~~~~~~w~~~~~l~~~~~i~iPin~------~~~HW~l~~v~~~~~~i~~~DSl~~~~~~   91 (148)
                      ..+++++++...+...  .+++.+++|++..++++++++++|||.      +++||+|++++++++++++|||+++.+..
T Consensus        50 ~~~f~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ifiPIn~~~~~~~~g~HW~l~vi~~~~~~i~~~DSl~~~~~~  127 (212)
T d2bkra1          50 HVSFISPEVTQFIKCT--SNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSV  127 (212)
T ss_dssp             TEEEECHHHHHHHHHC--CCHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHH
T ss_pred             cEEEEChHHHHHHhcc--ccHHHHHHHHhccChhhccEEEEecccccccccCcceeeeeeeccccceEEEecCCCcCCHH
Confidence            3455666666555542  456788899999999999999999996      35899999999999999999999987654


Q ss_pred             ccc----------------------cCCCCCCCCCchHHHHHHHHHHhcCC----CC---CCCCCCChHHHHHHHHHHHH
Q psy12908         92 CLN----------------------DVPQQQNSSDCGVFTSTFAEYLSRNA----DI---FKIKQKDMPYYRKKMMAEIL  142 (148)
Q Consensus        92 ~~~----------------------~~p~Q~n~~DCGvfv~~~~~~~~~~~----~~---~~~~~~~~~~~R~~i~~~ll  142 (148)
                      ..+                      .+|||+||+|||+|||+||++++.+.    ..   ..+++++++++|++|...|+
T Consensus       128 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~Q~N~~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~l~~lI~  207 (212)
T d2bkra1         128 HAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLIA  207 (212)
T ss_dssp             HHHHHHHHHHHHHSCTTCCCCEEECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCceeeeecccCCCCCCCChHHHHHHHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHH
Confidence            211                      89999999999999999999987542    11   24688999999999997775


Q ss_pred             h
Q psy12908        143 S  143 (148)
Q Consensus       143 ~  143 (148)
                      +
T Consensus       208 ~  208 (212)
T d2bkra1         208 T  208 (212)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Human adenovirus 2 proteinase, adenain
species: Mastadenovirus H2 [TaxId: 10515]

Probab=97.29  E-value=0.00011  Score=52.23  Aligned_cols=58  Identities=21%  Similarity=0.359  Sum_probs=45.9

Q ss_pred             cCceEEEEEEcccCCeeEEecCCCCCCccccc-----------------------------cCCCCCCCCCchHHHHHHH
Q psy12908         63 QKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN-----------------------------DVPQQQNSSDCGVFTSTFA  113 (148)
Q Consensus        63 ~~~HW~l~~v~~~~~~i~~~DSl~~~~~~~~~-----------------------------~~p~Q~n~~DCGvfv~~~~  113 (148)
                      |+.||.....|+..++++.+||.+=++.+-.+                             +.-|=+++--||.|.|.|+
T Consensus        50 GG~HWlA~Aw~P~s~t~Y~FDPfGfsd~~L~q~Y~FeY~~llkRSAL~~spdRCvtlvkstq~VQcp~SaaCGLFC~lFL  129 (203)
T d1nlna_          50 GGVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQVYQFEYESLLRRSAIASSPDRCITLEKSTQSVQGPNSAACGLFCCMFL  129 (203)
T ss_dssp             CCCCEEEEEEETTTTEEEEECTTCCCHHHHHHHHCCCCHHHHHHHHHHHCTTSEEEEEEECEECSCTTCCCHHHHHHHHH
T ss_pred             CceeeEEeEecCCcCeEEEECCCCCCHHHHHHHhhhhHHHHHHHHhhcCCCCceEEEEeccceecCCCchhHHHHHHHHH
Confidence            68999999999999999999999976543111                             3334457889999999999


Q ss_pred             HHHhcCC
Q psy12908        114 EYLSRNA  120 (148)
Q Consensus       114 ~~~~~~~  120 (148)
                      .++..-+
T Consensus       130 ~aF~~~p  136 (203)
T d1nlna_         130 HAFANWP  136 (203)
T ss_dssp             HHHHHCT
T ss_pred             HHHHhCC
Confidence            9987643

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.20  E-value=0.5  Score=33.05  Aligned_cols=37  Identities=35%  Similarity=0.714  Sum_probs=27.5

Q ss_pred             CCeeeeceEeeccccCceEEEEEeeeecchhhhccCC
Q psy12908          1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDS   37 (148)
Q Consensus         1 ~~~~~~d~~l~p~~~~~~~~~~~tff~~~L~~~~~~~   37 (148)
                      +|++++|+|++|.+.++.||++-.+-.+.-....+++
T Consensus        96 ~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DS  132 (221)
T d1euva_          96 TQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDS  132 (221)
T ss_dssp             SCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECS
T ss_pred             cchhhcceeEeeEecccceEEEEEeeccccceeeecc
Confidence            4789999999999987789998877665444433343