Psyllid ID: psy12911

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MFGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRSGS
Secondary Structure (PSIPRED)
cEEcccccccEEccccccccEEEEcccccccEEEEEEccccccccEEEEEEccccEEEEEcccccEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccEEEEEEEEcccccEEEEEEccccEEEEEccccccEEEEccccEEEEEEccccEEEEEEcccEEEEEEcccccEEEEEEcccccccEEEEEEEEcccccccccEEEEEEcccEEEEEEcccccccEEEEcccccccccccEEEEEEEEEEEcccccEEEEEcccccEEEEEcccccEEEccccccccEEEEEEcccccEEEEEEcccHHccccccccccccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEcccccEEEEEccccccEEEEEEccccccccEEEEEccccEEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEEccccccEEEEcccccEEEEEEcccccEEEEEEccccEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEEEEcccccccccEEEEEEcccEEEEEEEcccccEEEEEEcccccccccccccEEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEcccccccccccccccccEEEEEcccccccccccc
Coil and Loop (DISEMBL)
mfgqpalstttttstpnpnkdfevvsppedsiscmafspstlpQYFLIAgswdnnvrcwevepngktipksmqgmsepvldvawiddgtkvfmagcdktvkcwdlasnqsmqvaqhdapvktchwikapnytclmtgswdktlkfwdlrtpqpimtinlpercycadvdyplavvgtAGRGIVLYqlegkpqefkktesplkyQNRCIAIFRdkkkqpagyglgsVEGRVAIqyvnpanpkdnftfkchrsnggaggvqdiyavngivfhpvhgtlatvgsegtfsfwdkdartklkpseamdmsISTCALNHNGQIFAYAVSYdwskghehnnpnkgnaiflrpcfedmkprsgs
Flexible Loop (DISEMBL)
mfgqpalstttttstpnpnkDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNgktipksmqgmsEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEgkpqefkktesplkyQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATvgsegtfsfwDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRSGS
Low Complexity Region (SEG)
MFGQPALstttttstpnpnKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRSGS
Disordered region (IsUnstruct)
*********************************CMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG***********EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGK*********PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR*********DMSISTCALNHNGQIFAYAVSYDWSKGH********NAIFLRPCF*********
Disordered Region (DISOPRED)
MFGQPA*STTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFK*TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCF****P****
Disordered Region (DISEMBL)
***************PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS********PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFE********
Disordered Region (DISPRO)
***QPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCF*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRSGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
Q5FVA9	368	mRNA export factor OS=Xen	yes	N/A	0.966	0.934	0.690	1e-148
Q5E9A4	368	mRNA export factor OS=Bos	yes	N/A	0.977	0.945	0.682	1e-146
A5GFN6	368	mRNA export factor OS=Sus	yes	N/A	0.977	0.945	0.682	1e-146
Q5RF99	368	mRNA export factor OS=Pon	yes	N/A	0.977	0.945	0.679	1e-146
P78406	368	mRNA export factor OS=Hom	yes	N/A	0.977	0.945	0.679	1e-146
Q8C570	368	mRNA export factor OS=Mus	yes	N/A	0.977	0.945	0.679	1e-146
Q4R6D2	368	mRNA export factor OS=Mac	N/A	N/A	0.977	0.945	0.679	1e-146
Q3SWS8	368	mRNA export factor OS=Rat	yes	N/A	0.977	0.945	0.676	1e-146
Q7ZWF0	368	mRNA export factor OS=Dan	yes	N/A	0.969	0.937	0.677	1e-146
Q93454	373	Nucleoporin-17 OS=Caenorh	yes	N/A	0.988	0.943	0.532	1e-106

>sp|Q5FVA9|RAE1L_XENTR mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1

 Score =  524 bits (1349), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 239/346 (69%), Positives = 283/346 (81%), Gaps = 2/346 (0%)

Query: 11  TTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPK 70
           T T   NP KD EV SPP+DSISC++FSP TLP  FLIAGSW N+VRCWEV+ NG+TIPK
Sbjct: 21  TATDNHNPMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAGSWANDVRCWEVQDNGQTIPK 80

Query: 71  SMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPN 130
           + Q  + PVLDV W DDG+KVF A CDKT K WDL SNQS+Q+AQHDAP+KT HW+KAPN
Sbjct: 81  AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQSIQIAQHDAPIKTVHWVKAPN 140

Query: 131 YTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGK 190
           Y+C+MTGSWDK+LKFWD R+P P++T+ LPERCYCADV YP+AVV TA RG+++YQLE +
Sbjct: 141 YSCIMTGSWDKSLKFWDTRSPNPLLTLQLPERCYCADVVYPMAVVATAERGLIVYQLENQ 200

Query: 191 PQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKCH 249
           P EF++ +SPLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP KDNFTFKCH
Sbjct: 201 PSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260

Query: 250 RSNG-GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSIST 308
           RSNG      QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK SE +D  IS 
Sbjct: 261 RSNGTNTTAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320

Query: 309 CALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
           C+ NHNG IFAY+ SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct: 321 CSFNHNGNIFAYSSSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.
Xenopus tropicalis (taxid: 8364)

>sp|Q5E9A4|RAE1L_BOVIN mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1

 Score =  519 bits (1336), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 243/356 (68%), Positives = 283/356 (79%), Gaps = 8/356 (2%)

Query: 1   MFGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE 60
           MFG      +TTT   NP KD EV S P+DSI C++FSP TLP  FLIAGSW N+VRCWE
Sbjct: 17  MFG------STTTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWE 70

Query: 61  VEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV 120
           V+ +G+TIPK+ Q  + PVLDV W DDG+KVF A CDKT K WDL SNQ++Q+AQHDAPV
Sbjct: 71  VQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPV 130

Query: 121 KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR 180
           KT HWIKAPNY+C+MTGSWDKTLKFWD R+  P+M + LPERCYCADV YP+AVV TA R
Sbjct: 131 KTVHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAER 190

Query: 181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP 240
           G+++YQLE +P EF++ ESPLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP
Sbjct: 191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250

Query: 241 -KDNFTFKCHRSNG-GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP 298
            KDNFTFKCHRSNG      QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK 
Sbjct: 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Query: 299 SEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
           SE +D  IS C  NHNG IFAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct: 311 SEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Bos taurus (taxid: 9913)

>sp|A5GFN6|RAEL1_PIG mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1

 Score =  518 bits (1335), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 243/356 (68%), Positives = 283/356 (79%), Gaps = 8/356 (2%)

Query: 1   MFGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE 60
           MFG      +TTT   NP KD EV S P+DSI C++FSP TLP  FLIAGSW N+VRCWE
Sbjct: 17  MFG------STTTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWE 70

Query: 61  VEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV 120
           V+ +G+TIPK+ Q  + PVLDV W DDG+KVF A CDKT K WDL SNQ++Q+AQHDAPV
Sbjct: 71  VQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPV 130

Query: 121 KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR 180
           KT HWIKAPNY+C+MTGSWDKTLKFWD R+  P+M + LPERCYCADV YP+AVV TA R
Sbjct: 131 KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAER 190

Query: 181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP 240
           G+++YQLE +P EF++ ESPLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP
Sbjct: 191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250

Query: 241 -KDNFTFKCHRSNG-GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP 298
            KDNFTFKCHRSNG      QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK 
Sbjct: 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Query: 299 SEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
           SE +D  IS C  NHNG IFAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct: 311 SEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Sus scrofa (taxid: 9823)

>sp|Q5RF99|RAEL1_PONAB mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1

 Score =  518 bits (1335), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 242/356 (67%), Positives = 283/356 (79%), Gaps = 8/356 (2%)

Query: 1   MFGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE 60
           MFG      + TT   NP KD EV S P+DSI C++FSP TLP  FLIAGSW N+VRCWE
Sbjct: 17  MFG------SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWE 70

Query: 61  VEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV 120
           V+ +G+TIPK+ Q  + PVLDV W DDG+KVF A CDKT K WDL+SNQ++Q+AQHDAPV
Sbjct: 71  VQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPV 130

Query: 121 KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR 180
           KT HWIKAPNY+C+MTGSWDKTLKFWD R+  P+M + LPERCYCADV YP+AVV TA R
Sbjct: 131 KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAER 190

Query: 181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP 240
           G+++YQLE +P EF++ ESPLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP
Sbjct: 191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250

Query: 241 -KDNFTFKCHRSNG-GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP 298
            KDNFTFKCHRSNG      QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK 
Sbjct: 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Query: 299 SEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
           SE +D  IS C  NHNG IFAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct: 311 SEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Pongo abelii (taxid: 9601)

>sp|P78406|RAE1L_HUMAN mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1

 Score =  518 bits (1335), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 242/356 (67%), Positives = 283/356 (79%), Gaps = 8/356 (2%)

Query: 1   MFGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE 60
           MFG      + TT   NP KD EV S P+DSI C++FSP TLP  FLIAGSW N+VRCWE
Sbjct: 17  MFG------SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWE 70

Query: 61  VEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV 120
           V+ +G+TIPK+ Q  + PVLDV W DDG+KVF A CDKT K WDL+SNQ++Q+AQHDAPV
Sbjct: 71  VQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPV 130

Query: 121 KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR 180
           KT HWIKAPNY+C+MTGSWDKTLKFWD R+  P+M + LPERCYCADV YP+AVV TA R
Sbjct: 131 KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAER 190

Query: 181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP 240
           G+++YQLE +P EF++ ESPLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP
Sbjct: 191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250

Query: 241 -KDNFTFKCHRSNG-GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP 298
            KDNFTFKCHRSNG      QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK 
Sbjct: 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Query: 299 SEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
           SE +D  IS C  NHNG IFAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct: 311 SEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Homo sapiens (taxid: 9606)

>sp|Q8C570|RAE1L_MOUSE mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1

 Score =  518 bits (1333), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 242/356 (67%), Positives = 283/356 (79%), Gaps = 8/356 (2%)

Query: 1   MFGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE 60
           MFG      +TTT   NP KD EV S P+DSI C++FSP TLP  FLIAGSW N+VRCWE
Sbjct: 17  MFG------STTTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWE 70

Query: 61  VEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV 120
           V+ +G+TIPK+ Q  + PVLDV W DDG+KVF A CDKT K WDL SNQ++Q+AQHDAPV
Sbjct: 71  VQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPV 130

Query: 121 KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR 180
           KT HWIKAPNY+C+MTGSWDKTLKFWD R+  P+M + LPERCYCADV YP+AVV TA R
Sbjct: 131 KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAER 190

Query: 181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP 240
           G+++YQLE +P EF++ ESPLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP
Sbjct: 191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250

Query: 241 -KDNFTFKCHRSNG-GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP 298
            KDNFTFKCHRSNG      QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK 
Sbjct: 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Query: 299 SEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
           SE +D  I+ C  NHNG IFAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct: 311 SEQLDQPIAACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Mus musculus (taxid: 10090)

>sp|Q4R6D2|RAE1L_MACFA mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1

 Score =  518 bits (1333), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 242/356 (67%), Positives = 283/356 (79%), Gaps = 8/356 (2%)

Query: 1   MFGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE 60
           MFG      + TT   NP KD EV S P+DSI C++FSP TLP  FLIAGSW N+VRCWE
Sbjct: 17  MFG------SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWE 70

Query: 61  VEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV 120
           V+ +G+TIPK+ Q  + PVLDV W DDG+KVF A CDKT K WDL+SNQ++Q+AQHDAPV
Sbjct: 71  VQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPV 130

Query: 121 KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR 180
           KT HWIKAPNY+C+MTGSWDKTLKFWD R+  P+M + LPER YCADV YP+AVV TAGR
Sbjct: 131 KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERYYCADVIYPMAVVATAGR 190

Query: 181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP 240
           G+++YQLE +P EF++ ESPLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP
Sbjct: 191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250

Query: 241 -KDNFTFKCHRSNG-GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP 298
            KDNFTFKCHRSNG      QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK 
Sbjct: 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Query: 299 SEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
           SE +D  IS C  NHNG IFAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct: 311 SEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Macaca fascicularis (taxid: 9541)

>sp|Q3SWS8|RAE1L_RAT mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1

 Score =  518 bits (1333), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 241/356 (67%), Positives = 283/356 (79%), Gaps = 8/356 (2%)

Query: 1   MFGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE 60
           MFG      +TTT   NP KD EV S P+DSI C++FSP TLP  FLIAGSW N+VRCWE
Sbjct: 17  MFG------STTTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWE 70

Query: 61  VEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV 120
           V+ +G+TIPK+ Q  + PVLDV W DDG+KVF A CDKT K WDL SNQ++Q+AQHDAPV
Sbjct: 71  VQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPV 130

Query: 121 KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR 180
           KT HWIKAPNY+C+MTGSWDKTLKFWD R+  P+M + LPERCYCADV YP+AVV TA R
Sbjct: 131 KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAER 190

Query: 181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP 240
           G+++YQLE +P EF++ ESPLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP
Sbjct: 191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250

Query: 241 -KDNFTFKCHRSNG-GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP 298
            KDNFTFKCHRSNG      QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK 
Sbjct: 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Query: 299 SEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
           SE +D  ++ C  NHNG IFAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct: 311 SEQLDQPVAACGFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Rattus norvegicus (taxid: 10116)

>sp|Q7ZWF0|RAE1L_DANRE mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2

 Score =  518 bits (1333), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 235/347 (67%), Positives = 283/347 (81%), Gaps = 2/347 (0%)

Query: 10  TTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIP 69
           +TTT + NP KD EV SPP+DSISC+AFSP T+P  FLI GSW N+VRCWEV+ NG+T+P
Sbjct: 20  STTTDSHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQTVP 79

Query: 70  KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAP 129
           K+ Q  + PVLDV W DDG+KVF A CDKT K WDL SNQ++Q+AQH+ P++T HWIKAP
Sbjct: 80  KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHEGPIRTIHWIKAP 139

Query: 130 NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEG 189
           NY+C+MTGSWDKTLKFWD R+P P+M++ +PERCYCADV YP+AVV TA RG+++YQLE 
Sbjct: 140 NYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVYPMAVVATAERGLIVYQLEN 199

Query: 190 KPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKC 248
           +P EF++ ESPLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP KDNFTFKC
Sbjct: 200 QPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259

Query: 249 HRSNGGAGGV-QDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSIS 307
           HRSNG      QDIYAVN I FHPVHGTLATVGS+G FSFWDKDARTKLK SE +D  I+
Sbjct: 260 HRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPIT 319

Query: 308 TCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
            C  NHNG IFAYA SYDWSKGHE+ NP K N IFLR   E++KPR+
Sbjct: 320 ACCFNHNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAEELKPRN 366

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Danio rerio (taxid: 7955)

>sp|Q93454|NPP17_CAEEL Nucleoporin-17 OS=Caenorhabditis elegans GN=npp-17 PE=1 SV=1

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/359 (53%), Positives = 235/359 (65%), Gaps = 7/359 (1%)

Query: 1   MFGQPALSTTTTTSTPNP--NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRC 58
           MFG   +ST+TTT   N   N DF V   PED+I  + FSP+   +  L  GSWD  +R 
Sbjct: 12  MFGGSNISTSTTTPAANTTQNDDFLVDGAPEDTIQVIKFSPTPQDKPMLACGSWDGTIRV 71

Query: 59  WEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDA 118
           W          K+ Q +  P+LD+AWI+D +K+F+A  DK  + WDLASNQ   V  HD 
Sbjct: 72  WMFNDANTFEGKAQQNIPAPILDIAWIEDSSKIFIACADKEARLWDLASNQVAVVGTHDG 131

Query: 119 PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT---PQPIMTINLPERCYCADVDYPLAVV 175
           PVKTCHWI   NY CLMTGS+DKTL+FWD++       +  I LPER Y ADV YP+AVV
Sbjct: 132 PVKTCHWINGNNYQCLMTGSFDKTLRFWDMKNLPNQTQMAQIQLPERVYAADVLYPMAVV 191

Query: 176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQ-PAGYGLGSVEGRVAIQY 234
             A + I +Y LE  P E K  ES LK+Q RCI+IF+DK  Q PAG+ LGS+EGRVA+QY
Sbjct: 192 ALANKHIKVYNLENGPTEVKDIESQLKFQIRCISIFKDKSNQNPAGFALGSIEGRVAVQY 251

Query: 235 VNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART 294
           V+ ANPKDNFTFKCHRS     G Q+IYAVN I FHP HGTL T+GS+G +S WDKDART
Sbjct: 252 VDVANPKDNFTFKCHRSAELVNGFQEIYAVNDICFHPQHGTLVTIGSDGRYSMWDKDART 311

Query: 295 KLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPR 353
           KLK SE   M ++ C ++ +G    YA+ YDWS+GHE  N   G+ I +  C EDMKPR
Sbjct: 312 KLKTSEPHPMPLTCCDVHSSGAFLVYALGYDWSRGHE-GNTQPGSKIVIHKCIEDMKPR 369

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. It is specifically important for nuclear mRNA export.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
345488560	356	PREDICTED: mRNA export factor-like [Naso	1.0	1.0	0.761	1e-164
91087123	359	PREDICTED: similar to nucleoporin-17 [Tr	1.0	0.991	0.743	1e-161
332372953	357	unknown [Dendroctonus ponderosae]	0.994	0.991	0.732	1e-160
242020165	365	mRNA-associated protein mrnp, putative [	0.991	0.967	0.738	1e-158
357627886	350	mRNA export protein [Danaus plexippus]	0.949	0.965	0.761	1e-157
170056524	361	nucleoporin-17 [Culex quinquefasciatus]	0.991	0.977	0.725	1e-157
340717440	355	PREDICTED: mRNA export factor-like [Bomb	0.991	0.994	0.723	1e-157
350407466	355	PREDICTED: mRNA export factor-like [Bomb	0.991	0.994	0.723	1e-157
307199321	355	mRNA export factor [Harpegnathos saltato	0.991	0.994	0.717	1e-157
383855984	355	PREDICTED: mRNA export factor-like [Mega	0.991	0.994	0.720	1e-157

>gi|345488560|ref|XP_001601846.2| PREDICTED: mRNA export factor-like [Nasonia vitripennis]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 271/356 (76%), Positives = 303/356 (85%)

Query: 1   MFGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE 60
           MF Q     T  T+T NP KDFEVVSPP+DSIS +AFSP+T+PQ FL+AGSWD NVRCWE
Sbjct: 1   MFNQSTALATPATTTSNPMKDFEVVSPPDDSISSLAFSPATIPQNFLVAGSWDCNVRCWE 60

Query: 61  VEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV 120
           VE  GKT+PKSMQ M+ P+LDV W DDGTKVFMA CDK VKCWDLASNQ++QVA HDAPV
Sbjct: 61  VEQTGKTVPKSMQSMTGPILDVCWSDDGTKVFMASCDKMVKCWDLASNQTIQVAAHDAPV 120

Query: 121 KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR 180
           KTCHW+K  NYTCLMTGSWDKTLKFWD RTP P++TINLPERCYCADVDYP+AVVGTAGR
Sbjct: 121 KTCHWVKGSNYTCLMTGSWDKTLKFWDTRTPNPMLTINLPERCYCADVDYPMAVVGTAGR 180

Query: 181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP 240
           G+++YQLEG P E+K+ ESPLKYQ+RC+AIFRDKKK P GY LGSVEGRVAIQYVNP NP
Sbjct: 181 GLIVYQLEGTPHEYKRIESPLKYQHRCVAIFRDKKKVPTGYALGSVEGRVAIQYVNPTNP 240

Query: 241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE 300
           KDNFTFKCHR NG   G QDIYAVN I FHPVHGTLATVGS+GTFSFWDKDARTKLKPSE
Sbjct: 241 KDNFTFKCHRLNGAPNGYQDIYAVNDIAFHPVHGTLATVGSDGTFSFWDKDARTKLKPSE 300

Query: 301 AMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRSGS 356
            M+  I+ C  NHNGQIFAY+VSYDWSKG+E  NP K N IFLR C++++KPR+ S
Sbjct: 301 PMEHPITRCCFNHNGQIFAYSVSYDWSKGYEFYNPMKKNYIFLRSCYDELKPRNTS 356

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91087123|ref|XP_975206.1| PREDICTED: similar to nucleoporin-17 [Tribolium castaneum] gi|270011088|gb|EFA07536.1| RAE1 RNA export 1 homolog [Tribolium castaneum]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 267/359 (74%), Positives = 300/359 (83%), Gaps = 3/359 (0%)

Query: 1   MFGQPALST---TTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVR 57
           MF Q ++     T T S+ NP KDFEV  PP+DSIS +AFSP+TLPQ FLIA SWDNNVR
Sbjct: 1   MFNQSSIGGFGGTPTPSSANPMKDFEVTQPPDDSISSLAFSPATLPQNFLIAASWDNNVR 60

Query: 58  CWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHD 117
           CWE+E  GK++PKSMQ    PVLDV W DDGTKVFMAGCDK  K WDL SNQ +QVAQHD
Sbjct: 61  CWEIEQTGKSVPKSMQACGGPVLDVCWSDDGTKVFMAGCDKQAKAWDLGSNQVIQVAQHD 120

Query: 118 APVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGT 177
           AP+KTCHWIKA NY+CLMTGSWDKTLKFWD RTP P+M+INLPERCYCADVDYP+AVVGT
Sbjct: 121 APIKTCHWIKASNYSCLMTGSWDKTLKFWDTRTPNPMMSINLPERCYCADVDYPMAVVGT 180

Query: 178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP 237
           AGR I++YQL+GKPQ++K  +SPLKYQ+RC+AIFRDKKK P GY LGSVEGRVAIQYVNP
Sbjct: 181 AGRQIIVYQLDGKPQQYKVLDSPLKYQHRCVAIFRDKKKSPTGYALGSVEGRVAIQYVNP 240

Query: 238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297
           ANPKDNFTFKCHRSNG   G QDIYAVN I FHPVHGTLATVGS+G+FSFWDKDARTKLK
Sbjct: 241 ANPKDNFTFKCHRSNGAPNGYQDIYAVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLK 300

Query: 298 PSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRSGS 356
            S+ M+  I+ CA N NGQIFAYAVSYDWSKGHE  N  K N IFLR C++++KPR+ S
Sbjct: 301 SSDLMEQPITRCAFNSNGQIFAYAVSYDWSKGHEFYNSTKKNYIFLRSCYDELKPRTSS 359

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372953|gb|AEE61618.1| unknown [Dendroctonus ponderosae]

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 263/359 (73%), Positives = 303/359 (84%), Gaps = 5/359 (1%)

Query: 1   MFGQPAL---STTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVR 57
           M+ Q ++   ++TTT + PNP  D+EVV PP+DSIS +AFSP+ +PQ FL+AGSWDNNVR
Sbjct: 1   MYNQSSIGSFASTTTVAKPNPMNDYEVVQPPDDSISSLAFSPAAIPQTFLVAGSWDNNVR 60

Query: 58  CWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHD 117
            WE+E +G +IPKSMQ    PVLDVAW +DGTKVFMAGC+K  K WDLASNQ +QVA HD
Sbjct: 61  LWEIEQSGTSIPKSMQSCGGPVLDVAWSEDGTKVFMAGCEKQAKMWDLASNQVVQVAVHD 120

Query: 118 APVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGT 177
           AP+KTCHWI  PNY CLMTGSWDKTLKFWD R+P P+++INLPERCYCADVDYP+AVVGT
Sbjct: 121 APIKTCHWI--PNYPCLMTGSWDKTLKFWDTRSPTPMLSINLPERCYCADVDYPMAVVGT 178

Query: 178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP 237
           A R I++YQLEGKPQEFKK +SPLKYQ+RC+ IF+DKKKQPAGY LGS+EGRVAIQYVNP
Sbjct: 179 ANRHIIVYQLEGKPQEFKKLDSPLKYQHRCMKIFKDKKKQPAGYALGSIEGRVAIQYVNP 238

Query: 238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297
              KDNFTFKCHRSNG   G QDIYAVN + FHPVHGTLATVGS+GTFSFWDKDARTKLK
Sbjct: 239 TTVKDNFTFKCHRSNGTPNGFQDIYAVNDVAFHPVHGTLATVGSDGTFSFWDKDARTKLK 298

Query: 298 PSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRSGS 356
            S  M+ SISTCA NHNGQIFAYAVSYDWSKGHE++NP K N I+LR CF+++KPR  S
Sbjct: 299 ASSEMEQSISTCAFNHNGQIFAYAVSYDWSKGHEYHNPQKKNYIYLRSCFDELKPRPTS 357

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020165|ref|XP_002430526.1| mRNA-associated protein mrnp, putative [Pediculus humanus corporis] gi|212515690|gb|EEB17788.1| mRNA-associated protein mrnp, putative [Pediculus humanus corporis]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 263/356 (73%), Positives = 296/356 (83%), Gaps = 3/356 (0%)

Query: 2   FGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEV 61
           FG P  + + TT   NP KDFEV SPP+DS+S +AFSP++LPQ FLIAGSWDNNVRCWEV
Sbjct: 12  FGLPGATVSQTTH--NPMKDFEVTSPPDDSVSSIAFSPASLPQNFLIAGSWDNNVRCWEV 69

Query: 62  EPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVK 121
           E +GKTIPKS+Q M  P+LDV W DDGTKVFMA CDK VK WDLASNQ++QVA HDAPVK
Sbjct: 70  EQSGKTIPKSIQSMDGPILDVCWSDDGTKVFMASCDKQVKAWDLASNQTIQVAAHDAPVK 129

Query: 122 TCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRG 181
           TCHW++   Y+CLMTGSWDKTLKFWD RTP PIMTINLPER YC DVDYP+AVVGTAGR 
Sbjct: 130 TCHWVQGGVYSCLMTGSWDKTLKFWDTRTPNPIMTINLPERVYCVDVDYPMAVVGTAGRS 189

Query: 182 IVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK 241
           I++YQLEGKPQEFK+ ESPLKYQ+RCIAIFR+KKK P G+ +GSVEGRVAIQYV PA+PK
Sbjct: 190 IIVYQLEGKPQEFKRMESPLKYQHRCIAIFRNKKKIPTGFAIGSVEGRVAIQYVTPASPK 249

Query: 242 DNFTFKCHR-SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE 300
           +NF+FKCHR +N    G  DIYAVN + FHPVHGTLATVGS+GT SFWDKDARTKLKP E
Sbjct: 250 ENFSFKCHRVANNTVNGYHDIYAVNDLAFHPVHGTLATVGSDGTISFWDKDARTKLKPFE 309

Query: 301 AMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRSGS 356
            +D  I  CA NHNG IFAYA SYDWSKGHE+ NP K +AIFLR CFEDMK R+ S
Sbjct: 310 PLDQPIVACAFNHNGHIFAYAASYDWSKGHEYYNPAKKSAIFLRSCFEDMKGRASS 365

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357627886|gb|EHJ77417.1| mRNA export protein [Danaus plexippus]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 258/339 (76%), Positives = 288/339 (84%), Gaps = 1/339 (0%)

Query: 17  NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS 76
           NPNKD EV SPPED++S + FSP ++PQ FLIAGSWD  VRCWEVE +GKT+ K++QGM 
Sbjct: 11  NPNKDVEVASPPEDTVSALEFSPPSVPQTFLIAGSWDCRVRCWEVEASGKTVLKAVQGMD 70

Query: 77  EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMT 136
            P+LDVAW DDG+KVFMA  DK+VKCWDLASNQ+MQVA HDAPVKTCHWIKAPNYTCLMT
Sbjct: 71  GPILDVAWHDDGSKVFMASTDKSVKCWDLASNQTMQVAAHDAPVKTCHWIKAPNYTCLMT 130

Query: 137 GSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKK 196
            SWDKTLKFWD R+  PIMT+NL ERCYCADVDYP+AVVGTA RGI +Y LEGKP EFK+
Sbjct: 131 ASWDKTLKFWDTRSSVPIMTMNLTERCYCADVDYPMAVVGTADRGICIYTLEGKPAEFKR 190

Query: 197 TESPLKYQNRCIAIFRDKK-KQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA 255
            ESPLKYQ+RCIAIF+DKK KQP G+ +GSVEGRVAIQYV PANPKDNFTFKCHRS G  
Sbjct: 191 VESPLKYQHRCIAIFKDKKTKQPTGFAVGSVEGRVAIQYVTPANPKDNFTFKCHRSAGTT 250

Query: 256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNG 315
            G QDIYAVN + FHP HGTLATVGS+G+FSFWDKDARTKLK SE +D  ++ CA NHNG
Sbjct: 251 AGYQDIYAVNDVAFHPAHGTLATVGSDGSFSFWDKDARTKLKSSELIDQPLTKCAFNHNG 310

Query: 316 QIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
           QIFAYAV YDWSKGHEH N  K   IFLRPC+ED+KPRS
Sbjct: 311 QIFAYAVGYDWSKGHEHYNQAKKTYIFLRPCYEDLKPRS 349

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170056524|ref|XP_001864068.1| nucleoporin-17 [Culex quinquefasciatus] gi|167876165|gb|EDS39548.1| nucleoporin-17 [Culex quinquefasciatus]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 257/354 (72%), Positives = 295/354 (83%), Gaps = 1/354 (0%)

Query: 3   GQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVE 62
           G  A   TT  +  NP KDFEV SPPED++S M FSP+TL Q FLIAGSWD++VRCWEVE
Sbjct: 9   GASAFGGTTAVAPVNPMKDFEVTSPPEDTVSAMEFSPATLQQNFLIAGSWDSSVRCWEVE 68

Query: 63  PNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKT 122
            +GKT+ KS++ M  PVLDV W DDG+KVF+A  DK VKCWDLAS+Q +QVAQHDAP+KT
Sbjct: 69  QSGKTVGKSIKTMGGPVLDVCWADDGSKVFIASADKQVKCWDLASDQVVQVAQHDAPIKT 128

Query: 123 CHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGI 182
           CHW+K  NYTCLMTGSWDKTLKFWD RTPQP+M+I LPERCYCADVDYP+AVVGTAGR +
Sbjct: 129 CHWVKGTNYTCLMTGSWDKTLKFWDTRTPQPMMSIQLPERCYCADVDYPMAVVGTAGRHV 188

Query: 183 VLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKD 242
           ++Y LE KP ++K+ ESPLKYQ+R ++IFRDKKK P GY LGS+EGRVAIQYVNP NPKD
Sbjct: 189 LIYSLENKPTQYKQQESPLKYQHRTVSIFRDKKKTPTGYALGSIEGRVAIQYVNPINPKD 248

Query: 243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM 302
           NFTFKCHRSN G+ G QDIYAVN I FHP+HGTLATVGS+GTFSFWDKDARTKLK SEAM
Sbjct: 249 NFTFKCHRSN-GSSGYQDIYAVNDIAFHPIHGTLATVGSDGTFSFWDKDARTKLKSSEAM 307

Query: 303 DMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRSGS 356
           D SI+ C  N NGQIFAY V YDWSKGHE+NNP K   IFLR C+E++KPR+ S
Sbjct: 308 DQSITKCCFNANGQIFAYTVGYDWSKGHEYNNPQKKTYIFLRSCYEELKPRATS 361

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717440|ref|XP_003397190.1| PREDICTED: mRNA export factor-like [Bombus terrestris]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 256/354 (72%), Positives = 298/354 (84%), Gaps = 1/354 (0%)

Query: 1   MFGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE 60
           MF Q     T T++T NP +D+EVVSPP+DS+S +AFSP+ +PQ FL+AGSWD NVRCWE
Sbjct: 1   MFNQSGGLQTGTSTTSNPMQDYEVVSPPDDSVSSLAFSPACIPQNFLVAGSWDYNVRCWE 60

Query: 61  VEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV 120
           VE +GKT+PKSMQ M+ PVLDV W DDGTKVFMAGCDKT KCWDLASNQS+QVAQHDAP+
Sbjct: 61  VEQSGKTVPKSMQSMAAPVLDVCWSDDGTKVFMAGCDKTAKCWDLASNQSIQVAQHDAPI 120

Query: 121 KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR 180
           KTCHWIKA  Y+CLMTGSWDKTL+FWDLR+P+P MTINL ERCYCADVDYP+A VGTAGR
Sbjct: 121 KTCHWIKATTYSCLMTGSWDKTLRFWDLRSPKPAMTINLIERCYCADVDYPMAAVGTAGR 180

Query: 181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP 240
           G+++YQLEG P+E+K  E  LKYQ RCIAIFRDKKK P G+ +GS EGRVAI ++N  + 
Sbjct: 181 GLIVYQLEGSPREYKTVELNLKYQYRCIAIFRDKKKVPTGFAIGSTEGRVAIHHLNLGS- 239

Query: 241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE 300
           K+NFTFKCHR+NG   G QDIYAVN I FHPVHGT+ATVG +GTF FWDKDARTKLK SE
Sbjct: 240 KENFTFKCHRTNGTPNGYQDIYAVNDIAFHPVHGTIATVGGDGTFGFWDKDARTKLKSSE 299

Query: 301 AMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
            M+  I+ C  NHNGQIFAYAVSYDWSKGHE+ NP K N+IFLRPCFE++KP++
Sbjct: 300 PMEQPITRCCFNHNGQIFAYAVSYDWSKGHEYYNPAKKNSIFLRPCFEELKPKA 353

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407466|ref|XP_003488095.1| PREDICTED: mRNA export factor-like [Bombus impatiens]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 256/354 (72%), Positives = 298/354 (84%), Gaps = 1/354 (0%)

Query: 1   MFGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE 60
           MF Q     T T++T NP +D+EVVSPP+DS+S +AFSP+ +PQ FL+AGSWD NVRCWE
Sbjct: 1   MFNQSGGLQTGTSTTSNPMQDYEVVSPPDDSVSSLAFSPACIPQNFLVAGSWDCNVRCWE 60

Query: 61  VEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV 120
           VE +GKT+PKSMQ M+ PVLDV W DDGTKVFMAGCDKT KCWDLASNQS+QVAQHDAP+
Sbjct: 61  VEQSGKTVPKSMQSMAAPVLDVCWSDDGTKVFMAGCDKTAKCWDLASNQSIQVAQHDAPI 120

Query: 121 KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR 180
           KTCHWIKA  Y+CLMTGSWDKTL+FWDLR+P+P MTINL ERCYCADVDYP+A VGTAGR
Sbjct: 121 KTCHWIKATTYSCLMTGSWDKTLRFWDLRSPKPAMTINLIERCYCADVDYPMAAVGTAGR 180

Query: 181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP 240
           G+++YQLEG P+E+K  E  LKYQ RCIAIFRDKKK P G+ +GS EGRVAI ++N  + 
Sbjct: 181 GLIVYQLEGSPREYKTVELNLKYQYRCIAIFRDKKKVPTGFAIGSTEGRVAIHHLNLGS- 239

Query: 241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE 300
           K+NFTFKCHR+NG   G QDIYAVN I FHPVHGT+ATVG +GTF FWDKDARTKLK SE
Sbjct: 240 KENFTFKCHRTNGTPNGYQDIYAVNDIAFHPVHGTIATVGGDGTFGFWDKDARTKLKSSE 299

Query: 301 AMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
            M+  I+ C  NHNGQIFAYAVSYDWSKGHE+ NP K N+IFLRPCFE++KP++
Sbjct: 300 PMEQPITRCCFNHNGQIFAYAVSYDWSKGHEYYNPAKKNSIFLRPCFEELKPKA 353

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199321|gb|EFN79974.1| mRNA export factor [Harpegnathos saltator]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 254/354 (71%), Positives = 297/354 (83%), Gaps = 1/354 (0%)

Query: 1   MFGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE 60
           MF Q +   T T+ST NP +DFEVVSPP+DSIS +AFSP ++ Q FL+AGSWD NVRCWE
Sbjct: 1   MFNQSSTLRTGTSSTSNPMQDFEVVSPPDDSISSLAFSPPSIQQNFLVAGSWDCNVRCWE 60

Query: 61  VEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV 120
           VE +GKT+PKSMQ M+ PVLDV W DDGTKVFM  CDKT KCWDLA+NQS+QVA HDAP+
Sbjct: 61  VEQSGKTVPKSMQSMAAPVLDVCWSDDGTKVFMVSCDKTAKCWDLATNQSLQVAAHDAPI 120

Query: 121 KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR 180
           KTCHWIKA NY+CLMTGSWDKTLKFWDLR+ +P M INLPERCYCADVDYP+AVVGTAGR
Sbjct: 121 KTCHWIKASNYSCLMTGSWDKTLKFWDLRSAKPAMVINLPERCYCADVDYPMAVVGTAGR 180

Query: 181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP 240
           G+ +YQLEG P+E+K  E  LKYQ RC+AIFRDKKK P G+ +GS EGRVAI ++N ++ 
Sbjct: 181 GLTVYQLEGSPREYKTVELSLKYQYRCVAIFRDKKKAPTGFAIGSTEGRVAIHHLNLSS- 239

Query: 241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE 300
           K+NFTFKCHR+NG   G QDIYAVN I FHPVHGT+ATVGS+GTF FWDKDARTKLK SE
Sbjct: 240 KENFTFKCHRTNGTPNGYQDIYAVNDIAFHPVHGTVATVGSDGTFGFWDKDARTKLKSSE 299

Query: 301 AMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
            M+  I+ C  NHNGQIFAYAVSYDWSKGHE+ NP K N+IFLRPC++++KP++
Sbjct: 300 TMEQPITRCCFNHNGQIFAYAVSYDWSKGHEYYNPTKKNSIFLRPCYDELKPKA 353

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855984|ref|XP_003703490.1| PREDICTED: mRNA export factor-like [Megachile rotundata]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 255/354 (72%), Positives = 299/354 (84%), Gaps = 1/354 (0%)

Query: 1   MFGQPALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE 60
           MF Q     T T+++ NP +DFEVVSPP+DSIS +AFSP+++PQ FL+AGSWD NVRCWE
Sbjct: 1   MFNQSGGLRTGTSTSSNPMQDFEVVSPPDDSISSLAFSPASIPQNFLVAGSWDCNVRCWE 60

Query: 61  VEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV 120
           VE +GKT+PKSMQ M+ PVLDV W DDGTKVFMA CDKT KCWDLASNQS+QVA HDAP+
Sbjct: 61  VEQSGKTVPKSMQSMAAPVLDVCWSDDGTKVFMASCDKTAKCWDLASNQSIQVAAHDAPI 120

Query: 121 KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR 180
           KTCHWIKA  Y+CLMTGSWDKTL+FWDLR+P+P MTINL ERCYCADVDYP+AVVGTAGR
Sbjct: 121 KTCHWIKASTYSCLMTGSWDKTLRFWDLRSPKPAMTINLIERCYCADVDYPMAVVGTAGR 180

Query: 181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP 240
           G+++YQLEG P+E+K  E  LKYQ RC+AIFRDKKK P G+ +GS EGRVAI ++N ++ 
Sbjct: 181 GLIVYQLEGSPREYKTVELSLKYQYRCVAIFRDKKKVPTGFAIGSTEGRVAIHHLNLSS- 239

Query: 241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE 300
           K+NFTFKCHR+NG   G QDIYAVN I FHPVHGT+ATVG +GTF FWDKDARTKLK SE
Sbjct: 240 KENFTFKCHRTNGTPNGYQDIYAVNDIAFHPVHGTVATVGGDGTFGFWDKDARTKLKSSE 299

Query: 301 AMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
            M+  I+ C  NHNGQIFAYAVSYDWSKGHE+ NP K N+IFLRPCFE++KP++
Sbjct: 300 PMEQPITRCCFNHNGQIFAYAVSYDWSKGHEYYNPAKKNSIFLRPCFEELKPKA 353

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
FB|FBgn0034646	360	Rae1 "Rae1" [Drosophila melano	0.932	0.922	0.723	6.3e-140
UNIPROTKB|E1C7F8	368	Gga.22300 "Uncharacterized pro	0.941	0.910	0.706	1.2e-136
UNIPROTKB|P78406	368	RAE1 "mRNA export factor" [Hom	0.941	0.910	0.697	1.4e-135
UNIPROTKB|Q5E9A4	368	RAE1 "mRNA export factor" [Bos	0.941	0.910	0.697	2.9e-135
UNIPROTKB|E2RSV2	368	RAE1 "Uncharacterized protein"	0.941	0.910	0.697	2.9e-135
UNIPROTKB|A5GFN6	368	RAE1 "mRNA export factor" [Sus	0.941	0.910	0.697	2.9e-135
ZFIN|ZDB-GENE-040426-1029	368	rae1 "RAE1 RNA export 1 homolo	0.941	0.910	0.682	4.7e-135
MGI|MGI:1913929	368	Rae1 "RAE1 RNA export 1 homolo	0.941	0.910	0.694	6e-135
RGD|1311540	368	Rae1 "RAE1 RNA export 1 homolo	0.941	0.910	0.691	7.7e-135
UNIPROTKB|Q7ZZY7	368	Rae1/Gle2 "Rae1/Gle2" [Xenopus	0.941	0.910	0.688	9.8e-135

FB|FBgn0034646 Rae1 "Rae1" [Drosophila melanogaster (taxid:7227)]

 Score = 1369 (487.0 bits), Expect = 6.3e-140, P = 6.3e-140
 Identities = 241/333 (72%), Positives = 276/333 (82%)

Query:    21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVL 80
             DFEV SPP+DS+S + FSPST+ + FL+AGSWD+ VRCWEVE NG T+PKSM+ M  PVL
Sbjct:    27 DFEVASPPDDSVSALEFSPSTVQKNFLVAGSWDSTVRCWEVEQNGATVPKSMKTMGGPVL 86

Query:    81 DVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD 140
             DV W DDG+KVF+A CDK VK WDLAS+Q MQVA HD PVKTCH +K P YTCLMTGSWD
Sbjct:    87 DVCWSDDGSKVFVASCDKQVKLWDLASDQVMQVAAHDGPVKTCHMVKGPTYTCLMTGSWD 146

Query:   141 KTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESP 200
             KTLKFWD R+P P+MTINLPERCYCADV+YP+AVVGTA RG+++Y L+  P E+K+ ESP
Sbjct:   147 KTLKFWDTRSPNPMMTINLPERCYCADVEYPMAVVGTANRGLIIYSLQNSPTEYKRQESP 206

Query:   201 LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQD 260
             LKYQ+R I+IFRDKKK+P G  LGS+EGRVAIQYVNP NPKDNFTFKCHR+ G   G QD
Sbjct:   207 LKYQHRAISIFRDKKKEPTGCALGSIEGRVAIQYVNPGNPKDNFTFKCHRTTG-TSGYQD 265

Query:   261 IYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAY 320
             IYAVN I FHPVHGTL TVGS+GTFSFWDKDARTKLK SE MD SI+ C  N NGQIFAY
Sbjct:   266 IYAVNDIAFHPVHGTLVTVGSDGTFSFWDKDARTKLKSSETMDQSITKCGFNANGQIFAY 325

Query:   321 AVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPR 353
             AV YDWSKGHE+ NP K   IFLR C++++KPR
Sbjct:   326 AVGYDWSKGHEYFNPAKKPQIFLRSCYDELKPR 358

GO:2000045 "regulation of G1/S transition of mitotic cell cycle" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=IMP

GO:0051297 "centrosome organization" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045886 "negative regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0010506 "regulation of autophagy" evidence=IMP

GO:0005643 "nuclear pore" evidence=IPI

UNIPROTKB|E1C7F8 Gga.22300 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1338 (476.1 bits), Expect = 1.2e-136, P = 1.2e-136
 Identities = 238/337 (70%), Positives = 275/337 (81%)

Query:    20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
             KD EV SPP+DSISC+AFSP TLP  FLIAGSW N+VRCWEV+ NG+TIPK+ Q  + PV
Sbjct:    30 KDIEVTSPPDDSISCLAFSPPTLPGNFLIAGSWANDVRCWEVQDNGQTIPKAQQMHTGPV 89

Query:    80 LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW 139
             LD  W DDG+KVF A CDKT K WDL SNQ++Q+AQHDAPVKT HWIKAPNY+C+MTGSW
Sbjct:    90 LDGCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW 149

Query:   140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
             DKTLKFWD R+P P+MT+ LPERCYCADV +P+A V TA RG+++YQLE +P EF++ ES
Sbjct:   150 DKTLKFWDTRSPTPMMTLQLPERCYCADVVHPMAAVATAERGLIVYQLENQPSEFRRIES 209

Query:   200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKCHRSNG-GAGG 257
             PLK+Q+RC+AIF+DK  +P G+ LGS+EGRVAI Y+NP NP KDNFTFKCHRSNG     
Sbjct:   210 PLKHQHRCVAIFKDKVNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269

Query:   258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI 317
              QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK SE +D  IS C  NHNG I
Sbjct:   270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329

Query:   318 FAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
             FAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct:   330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|P78406 RAE1 "mRNA export factor" [Homo sapiens (taxid:9606)]

 Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
 Identities = 235/337 (69%), Positives = 275/337 (81%)

Query:    20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
             KD EV S P+DSI C++FSP TLP  FLIAGSW N+VRCWEV+ +G+TIPK+ Q  + PV
Sbjct:    30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 89

Query:    80 LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW 139
             LDV W DDG+KVF A CDKT K WDL+SNQ++Q+AQHDAPVKT HWIKAPNY+C+MTGSW
Sbjct:    90 LDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW 149

Query:   140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
             DKTLKFWD R+  P+M + LPERCYCADV YP+AVV TA RG+++YQLE +P EF++ ES
Sbjct:   150 DKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIES 209

Query:   200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKCHRSNG-GAGG 257
             PLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP KDNFTFKCHRSNG     
Sbjct:   210 PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269

Query:   258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI 317
              QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK SE +D  IS C  NHNG I
Sbjct:   270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329

Query:   318 FAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
             FAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct:   330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008017 "microtubule binding" evidence=ISS

GO:0003723 "RNA binding" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0005640 "nuclear outer membrane" evidence=TAS

GO:0005643 "nuclear pore" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0006406 "mRNA export from nucleus" evidence=TAS

GO:0005635 "nuclear envelope" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|Q5E9A4 RAE1 "mRNA export factor" [Bos taurus (taxid:9913)]

 Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
 Identities = 235/337 (69%), Positives = 274/337 (81%)

Query:    20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
             KD EV S P+DSI C++FSP TLP  FLIAGSW N+VRCWEV+ +G+TIPK+ Q  + PV
Sbjct:    30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 89

Query:    80 LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW 139
             LDV W DDG+KVF A CDKT K WDL SNQ++Q+AQHDAPVKT HWIKAPNY+C+MTGSW
Sbjct:    90 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTVHWIKAPNYSCVMTGSW 149

Query:   140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
             DKTLKFWD R+  P+M + LPERCYCADV YP+AVV TA RG+++YQLE +P EF++ ES
Sbjct:   150 DKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIES 209

Query:   200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKCHRSNG-GAGG 257
             PLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP KDNFTFKCHRSNG     
Sbjct:   210 PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269

Query:   258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI 317
              QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK SE +D  IS C  NHNG I
Sbjct:   270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329

Query:   318 FAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
             FAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct:   330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|E2RSV2 RAE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
 Identities = 235/337 (69%), Positives = 274/337 (81%)

Query:    20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
             KD EV S P+DSI C++FSP TLP  FLIAGSW N+VRCWEV+ +G+TIPK+ Q  + PV
Sbjct:    30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 89

Query:    80 LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW 139
             LDV W DDG+KVF A CDKT K WDL SNQ++Q+AQHDAPVKT HWIKAPNY+C+MTGSW
Sbjct:    90 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW 149

Query:   140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
             DKTLKFWD R+  P+M + LPERCYCADV YP+AVV TA RG+++YQLE +P EF++ ES
Sbjct:   150 DKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIES 209

Query:   200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKCHRSNG-GAGG 257
             PLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP KDNFTFKCHRSNG     
Sbjct:   210 PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269

Query:   258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI 317
              QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK SE +D  IS C  NHNG I
Sbjct:   270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329

Query:   318 FAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
             FAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct:   330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|A5GFN6 RAE1 "mRNA export factor" [Sus scrofa (taxid:9823)]

 Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
 Identities = 235/337 (69%), Positives = 274/337 (81%)

Query:    20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
             KD EV S P+DSI C++FSP TLP  FLIAGSW N+VRCWEV+ +G+TIPK+ Q  + PV
Sbjct:    30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 89

Query:    80 LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW 139
             LDV W DDG+KVF A CDKT K WDL SNQ++Q+AQHDAPVKT HWIKAPNY+C+MTGSW
Sbjct:    90 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW 149

Query:   140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
             DKTLKFWD R+  P+M + LPERCYCADV YP+AVV TA RG+++YQLE +P EF++ ES
Sbjct:   150 DKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIES 209

Query:   200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKCHRSNG-GAGG 257
             PLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP KDNFTFKCHRSNG     
Sbjct:   210 PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269

Query:   258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI 317
              QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK SE +D  IS C  NHNG I
Sbjct:   270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329

Query:   318 FAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
             FAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct:   330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

ZFIN|ZDB-GENE-040426-1029 rae1 "RAE1 RNA export 1 homolog (S. pombe)" [Danio rerio (taxid:7955)]

 Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
 Identities = 230/337 (68%), Positives = 276/337 (81%)

Query:    20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
             KD EV SPP+DSISC+AFSP T+P  FLI GSW N+VRCWEV+ NG+T+PK+ Q  + PV
Sbjct:    30 KDVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQTVPKAQQMHTGPV 89

Query:    80 LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW 139
             LDV W DDG+KVF A CDKT K WDL SNQ++Q+AQH+ P++T HWIKAPNY+C+MTGSW
Sbjct:    90 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHEGPIRTIHWIKAPNYSCIMTGSW 149

Query:   140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
             DKTLKFWD R+P P+M++ +PERCYCADV YP+AVV TA RG+++YQLE +P EF++ ES
Sbjct:   150 DKTLKFWDTRSPNPMMSLQMPERCYCADVVYPMAVVATAERGLIVYQLENQPSEFRRIES 209

Query:   200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKCHRSNG-GAGG 257
             PLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP KDNFTFKCHRSNG     
Sbjct:   210 PLKHQHRCVAIFKDKQSKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTAT 269

Query:   258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI 317
              QDIYAVN I FHPVHGTLATVGS+G FSFWDKDARTKLK SE +D  I+ C  NHNG I
Sbjct:   270 PQDIYAVNAISFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPITACCFNHNGNI 329

Query:   318 FAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
             FAYA SYDWSKGHE+ NP K N IFLR   E++KPR+
Sbjct:   330 FAYASSYDWSKGHEYYNPQKKNYIFLRNAAEELKPRN 366

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1913929 Rae1 "RAE1 RNA export 1 homolog (S. pombe)" [Mus musculus (taxid:10090)]

 Score = 1322 (470.4 bits), Expect = 6.0e-135, P = 6.0e-135
 Identities = 234/337 (69%), Positives = 274/337 (81%)

Query:    20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
             KD EV S P+DSI C++FSP TLP  FLIAGSW N+VRCWEV+ +G+TIPK+ Q  + PV
Sbjct:    30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 89

Query:    80 LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW 139
             LDV W DDG+KVF A CDKT K WDL SNQ++Q+AQHDAPVKT HWIKAPNY+C+MTGSW
Sbjct:    90 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW 149

Query:   140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
             DKTLKFWD R+  P+M + LPERCYCADV YP+AVV TA RG+++YQLE +P EF++ ES
Sbjct:   150 DKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIES 209

Query:   200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKCHRSNG-GAGG 257
             PLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP KDNFTFKCHRSNG     
Sbjct:   210 PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269

Query:   258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI 317
              QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK SE +D  I+ C  NHNG I
Sbjct:   270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPIAACCFNHNGNI 329

Query:   318 FAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
             FAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct:   330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0071407 "cellular response to organic cyclic compound" evidence=IDA

RGD|1311540 Rae1 "RAE1 RNA export 1 homolog (S. pombe)" [Rattus norvegicus (taxid:10116)]

 Score = 1321 (470.1 bits), Expect = 7.7e-135, P = 7.7e-135
 Identities = 233/337 (69%), Positives = 274/337 (81%)

Query:    20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
             KD EV S P+DSI C++FSP TLP  FLIAGSW N+VRCWEV+ +G+TIPK+ Q  + PV
Sbjct:    30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 89

Query:    80 LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW 139
             LDV W DDG+KVF A CDKT K WDL SNQ++Q+AQHDAPVKT HWIKAPNY+C+MTGSW
Sbjct:    90 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW 149

Query:   140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
             DKTLKFWD R+  P+M + LPERCYCADV YP+AVV TA RG+++YQLE +P EF++ ES
Sbjct:   150 DKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIES 209

Query:   200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKCHRSNG-GAGG 257
             PLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP KDNFTFKCHRSNG     
Sbjct:   210 PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269

Query:   258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI 317
              QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK SE +D  ++ C  NHNG I
Sbjct:   270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPVAACGFNHNGNI 329

Query:   318 FAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
             FAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct:   330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA;ISO

UNIPROTKB|Q7ZZY7 Rae1/Gle2 "Rae1/Gle2" [Xenopus laevis (taxid:8355)]

 Score = 1320 (469.7 bits), Expect = 9.8e-135, P = 9.8e-135
 Identities = 232/337 (68%), Positives = 274/337 (81%)

Query:    20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
             KD EV SPP+DSISC++FSP TLP  FLIAGSW N+VRCWEV+ NG+TIPK+ Q  + PV
Sbjct:    30 KDIEVASPPDDSISCLSFSPQTLPGNFLIAGSWANDVRCWEVQDNGQTIPKAQQMHTGPV 89

Query:    80 LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW 139
              DV W DDGTKVF A CDKT K WDL SNQS+Q+AQHDAP+KT HW+KAPNY+C+MTGSW
Sbjct:    90 QDVCWSDDGTKVFTASCDKTAKMWDLNSNQSIQIAQHDAPIKTVHWVKAPNYSCIMTGSW 149

Query:   140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
             DKTLKFWD R+P P+++I LPER YCADV YP+AVV TA RG+++YQLE +P EF++ +S
Sbjct:   150 DKTLKFWDTRSPNPLLSIQLPERGYCADVVYPMAVVATAERGLIVYQLENQPSEFRRIDS 209

Query:   200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKCHRSNG-GAGG 257
             PLK+Q+RC+ IF+DK+ +P G+ LGS+EGRVAI Y+NP NP KDNFTFKCHRSNG     
Sbjct:   210 PLKHQHRCVGIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTAA 269

Query:   258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI 317
              QDIYAVN I FHPVHGTLATVGS+G FSFWDKDARTKLK SE +D  I+ C  NHNG I
Sbjct:   270 PQDIYAVNDIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPITACCFNHNGNI 329

Query:   318 FAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
             FAY+ SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct:   330 FAYSSSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

GO:0005515 "protein binding" evidence=IPI

GO:0008017 "microtubule binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P78406	RAE1L_HUMAN	No assigned EC number	0.6797	0.9775	0.9456	yes	N/A
Q8C570	RAE1L_MOUSE	No assigned EC number	0.6797	0.9775	0.9456	yes	N/A
Q7ZWF0	RAE1L_DANRE	No assigned EC number	0.6772	0.9691	0.9375	yes	N/A
Q38942	RAE1L_ARATH	No assigned EC number	0.4600	0.9382	0.9570	yes	N/A
P41838	RAE1_SCHPO	No assigned EC number	0.4676	0.9634	0.9744	yes	N/A
A5GFN6	RAEL1_PIG	No assigned EC number	0.6825	0.9775	0.9456	yes	N/A
Q3SWS8	RAE1L_RAT	No assigned EC number	0.6769	0.9775	0.9456	yes	N/A
Q93454	NPP17_CAEEL	No assigned EC number	0.5320	0.9887	0.9436	yes	N/A
Q5FVA9	RAE1L_XENTR	No assigned EC number	0.6907	0.9662	0.9347	yes	N/A
P40066	GLE2_YEAST	No assigned EC number	0.4269	0.9438	0.9205	yes	N/A
Q5E9A4	RAE1L_BOVIN	No assigned EC number	0.6825	0.9775	0.9456	yes	N/A
Q4R6D2	RAE1L_MACFA	No assigned EC number	0.6797	0.9775	0.9456	N/A	N/A
Q5RF99	RAEL1_PONAB	No assigned EC number	0.6797	0.9775	0.9456	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	356
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	5e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 97.8 bits (244), Expect = 2e-23
 Identities = 69/303 (22%), Positives = 115/303 (37%), Gaps = 45/303 (14%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG 88
              ++C+AFSP       L  GS D  ++ W++E     + ++++G + PV DVA   DG
Sbjct: 9   TGGVTCVAFSPDGK---LLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASADG 63

Query: 89  TKVFMAGCDKTVKCWDLASNQS-MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD 147
           T +     DKT++ WDL + +    +  H + V +  +   P+   L + S DKT+K WD
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS--PDGRILSSSSRDKTIKVWD 121

Query: 148 LRTPQPIMTINLPE---RCYCADVDYPLAVVGTAGRGIVLYQLE-GKP-QEFKKTESPLK 202
           + T + + T+              D       +    I L+ L  GK           + 
Sbjct: 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV- 180

Query: 203 YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIY 262
                +A   D +K        S +G + + +       D  T KC  +  G        
Sbjct: 181 ---NSVAFSPDGEK----LLSSSSDGTIKL-W-------DLSTGKCLGTLRG-----HEN 220

Query: 263 AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV 322
            VN + F P    LA+   +GT   WD      ++               H   + + A 
Sbjct: 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ-----------TLSGHTNSVTSLAW 269

Query: 323 SYD 325
           S D
Sbjct: 270 SPD 272

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 90.1 bits (222), Expect = 6e-20
 Identities = 60/312 (19%), Positives = 125/312 (40%), Gaps = 27/312 (8%)

Query: 17  NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS 76
            P K    +    +S++ +AFSP    +      S D  ++ W++   GK +  ++ G +
Sbjct: 143 TPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLR-TGKPL-STLAGHT 198

Query: 77  EPVLDVAWIDDGTKVFM-AGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLM 135
           +PV  +A+  DG  +      D T++ WDL++ + ++               +P+ + L 
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF-SPDGSLLA 257

Query: 136 TGSWDKTLKFWDLRTP-QPIMTINLPERCYCA---DVDYPLAVVGTAGRGIVLYQLEGKP 191
           +GS D T++ WDLR+    + T++       +     D  L   G++   + L+ LE   
Sbjct: 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317

Query: 192 QEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS 251
                T    +     ++   D     +G   GS +G + +  +    P    T + H +
Sbjct: 318 LLSSLTLKGHEGPVSSLSFSPDGSLLVSG---GSDDGTIRLWDLRTGKPL--KTLEGHSN 372

Query: 252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCAL 311
                       V  + F P    +++  ++GT   WD    + L+  +     +++   
Sbjct: 373 ------------VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420

Query: 312 NHNGQIFAYAVS 323
           + +G+  A   S
Sbjct: 421 SPDGKSLASGSS 432

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 85.9 bits (211), Expect = 2e-18
 Identities = 61/281 (21%), Positives = 112/281 (39%), Gaps = 34/281 (12%)

Query: 17  NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS 76
              K    ++   D +S +AFSP       + +GS D  +R W++   GK +  ++ G S
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPD--GGLLIASGSSDGTIRLWDLS-TGKLLRSTLSGHS 242

Query: 77  EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS--MQVAQHDAPVKTCHWIKAPNYTCL 134
           + V+  ++  DG+ +     D T++ WDL S+ S    ++ H + V +  +   P+   L
Sbjct: 243 DSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS--PDGKLL 299

Query: 135 MTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYP-----LAVVGTAGRGIVLYQLE 188
            +GS D T++ WDL T + + ++ L       + + +      L   G+    I L+ L 
Sbjct: 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359

Query: 189 GKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC 248
                              ++   D +        GS +G V +  ++        T   
Sbjct: 360 TGKPLKTLEGHSNVL---SVSFSPDGRV----VSSGSTDGTVRLWDLS--------TGSL 404

Query: 249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD 289
            R+  G         V  + F P   +LA+  S+ T   WD
Sbjct: 405 LRNLDGHTSR-----VTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 82.8 bits (205), Expect = 4e-18
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 8/120 (6%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG 88
              ++ +AFSP       L++ S D  ++ W++   GK +  +++G    V  VA+  DG
Sbjct: 177 TGEVNSVAFSPDGEK---LLSSSSDGTIKLWDLS-TGKCL-GTLRGHENGVNSVAFSPDG 231

Query: 89  TKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD 147
             +     D T++ WDL + + +Q    H   V +  W  +P+   L +GS D T++ WD
Sbjct: 232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW--SPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 83.6 bits (205), Expect = 1e-17
 Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 37/310 (11%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-D 87
           EDSI+ +AFSP       L++GS D  ++ W+++   K I          V  +A    D
Sbjct: 65  EDSITSIAFSPD---GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD 121

Query: 88  GTKVFMAG--CDKTVKCWDLAS--NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTL 143
           G  + +A    D TVK WDL++       +  H   V +  +            S D T+
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTI 180

Query: 144 KFWDLRTPQPIMTINLPERCYCADVDY-----PLAVVGTAGRGIVLYQLEGKPQEFKKTE 198
           K WDLRT +P+ T+          + +      L   G++   I L+ L       K   
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVS-SLAFSPDGGLLIASGSSDGTIRLWDL----STGKLLR 235

Query: 199 SPLK-YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG 257
           S L  + +  ++ F       A    GS +G + + +   ++     T   H S      
Sbjct: 236 STLSGHSDSVVSSFSPDGSLLA---SGSSDGTIRL-WDLRSSSSLLRTLSGHSS------ 285

Query: 258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD--ARTKLKPSEAMDMSISTCALNHNG 315
                +V  + F P    LA+  S+GT   WD +          +  +  +S+ + + +G
Sbjct: 286 -----SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG 340

Query: 316 QIFAYAVSYD 325
            +     S D
Sbjct: 341 SLLVSGGSDD 350

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.0 bits (193), Expect = 4e-16
 Identities = 67/303 (22%), Positives = 119/303 (39%), Gaps = 25/303 (8%)

Query: 23  EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDV 82
            +    + S+S +A S        L + S D  V+ W++   GK I ++++G SE V  +
Sbjct: 103 SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI-RTLEGHSESVTSL 161

Query: 83  AWIDDGTKVFMAGC-DKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWD 140
           A+  DG  +      D T+K WDL + + +   A H  PV +  +        + +GS D
Sbjct: 162 AFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL-IASGSSD 220

Query: 141 KTLKFWDLRTPQPIMTI---NLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT 197
            T++ WDL T + + +    +          D  L   G++   I L+ L       +  
Sbjct: 221 GTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL 280

Query: 198 ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG 257
                     +A   D K   +    GS +G V +  +       + T K H        
Sbjct: 281 SGH-SSSVLSVAFSPDGKLLAS----GSSDGTVRLWDLETGKLLSSLTLKGHEG------ 329

Query: 258 VQDIYAVNGIVFHPVHGTLATVGSE-GTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQ 316
                 V+ + F P    L + GS+ GT   WD      LK  E    ++ + + + +G+
Sbjct: 330 -----PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGR 383

Query: 317 IFA 319
           + +
Sbjct: 384 VVS 386

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.8 bits (138), Expect = 4e-09
 Identities = 52/273 (19%), Positives = 91/273 (33%), Gaps = 31/273 (11%)

Query: 64  NGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS---MQVAQHDAPV 120
                   ++G  + +  +A+  DG  +     D T+K WDL + +         HD+ V
Sbjct: 53  LPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSV 112

Query: 121 KTCHWIKAPNYTCLMT--GSWDKTLKFWDLRTP-QPIMTINL-PERCYCADV---DYPLA 173
                  +P+   ++    S D T+K WDL TP + I T+    E             LA
Sbjct: 113 SKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA 171

Query: 174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQ 233
              +    I L+ L  +  +   T +        +A   D                    
Sbjct: 172 SGSSLDGTIKLWDL--RTGKPLSTLAGHTDPVSSLAFSPDGGL----LIASGSSDGTIRL 225

Query: 234 YVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD-KDA 292
           +          T   H  +                F P    LA+  S+GT   WD + +
Sbjct: 226 WDLSTGKLLRSTLSGHSDS------------VVSSFSPDGSLLASGSSDGTIRLWDLRSS 273

Query: 293 RTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325
            + L+       S+ + A + +G++ A + S D
Sbjct: 274 SSLLRTLSGHSSSVLSVAFSPDGKLLA-SGSSD 305

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.0 bits (136), Expect = 5e-09
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 8/135 (5%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG 88
           E  +S ++FSP       +  GS D  +R W++                 VL V++  DG
Sbjct: 328 EGPVSSLSFSPD--GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS---NVLSVSFSPDG 382

Query: 89  TKVFMAGCDKTVKCWDLASN-QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD 147
             V     D TV+ WDL++      +  H + V +  +   P+   L +GS D T++ WD
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFS--PDGKSLASGSSDNTIRLWD 440

Query: 148 LRTPQPIMTINLPER 162
           L+T    ++ +   +
Sbjct: 441 LKTSLKSVSFSPDGK 455

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 116 HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD 147
           H  PV +  +  +P+   L +GS D T++ WD
Sbjct: 10  HTGPVTSVAF--SPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 70  KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104
           K+++G + PV  VA+  DG  +     D T+K WD
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 116 HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD 147
           H  PV +  +  +P+   L +GS D T+K WD
Sbjct: 11  HTGPVTSVAF--SPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 70  KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104
           ++++G + PV  VA+  DG  +     D TV+ WD
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 3/31 (9%)

Query: 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCW 59
             ++ +AFSP       L +GS D  VR W
Sbjct: 11 TGPVTSVAFSPD---GNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE 60
             ++ +AFSP      +L +GS D  ++ W+
Sbjct: 12 TGPVTSVAFSPD---GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
KOG0647|consensus	347		100.0
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0286|consensus	343		100.0
KOG1036|consensus	323		100.0
KOG0315|consensus	311		100.0
KOG0279|consensus	315		100.0
KOG0265|consensus	338		100.0
KOG0295|consensus	406		100.0
KOG0272|consensus	459		100.0
KOG0273|consensus	524		100.0
KOG0316|consensus	307		100.0
KOG0315|consensus	311		100.0
KOG0271|consensus	480		100.0
KOG0282|consensus	503		100.0
KOG0285|consensus	460		100.0
KOG0284|consensus	464		100.0
KOG0318|consensus	603		100.0
KOG0273|consensus	524		100.0
KOG0279|consensus	315		100.0
KOG0263|consensus	707		100.0
KOG0291|consensus	893		100.0
KOG0296|consensus	399		100.0
KOG0286|consensus	343		100.0
KOG0293|consensus	519		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266|consensus	456		100.0
KOG0645|consensus	312		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0263|consensus	707		100.0
KOG0291|consensus	893		100.0
KOG0292|consensus	1202		100.0
KOG0276|consensus	794		100.0
KOG0284|consensus	464		100.0
KOG0643|consensus	327		100.0
KOG1446|consensus	311		100.0
KOG0288|consensus	459		100.0
KOG0281|consensus	499		100.0
KOG0318|consensus	603		100.0
KOG0319|consensus	775		100.0
KOG1407|consensus	313		100.0
KOG0299|consensus	479		100.0
KOG0283|consensus	712		100.0
KOG0319|consensus	775		100.0
KOG0645|consensus	312		100.0
KOG0275|consensus	508		100.0
KOG0265|consensus	338		100.0
KOG0281|consensus	499		100.0
KOG0313|consensus	423		100.0
KOG0306|consensus	888		100.0
KOG0266|consensus	456		100.0
KOG0277|consensus	311		100.0
KOG0295|consensus	406		100.0
KOG0268|consensus	433		100.0
KOG0278|consensus	334		100.0
KOG0277|consensus	311		100.0
KOG1407|consensus	313		100.0
KOG0296|consensus	399		100.0
KOG0278|consensus	334		100.0
KOG0310|consensus	487		100.0
KOG0316|consensus	307		100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0285|consensus	460		100.0
KOG0293|consensus	519		100.0
KOG0292|consensus	1202		100.0
KOG0313|consensus	423		100.0
KOG0772|consensus	641		100.0
KOG0282|consensus	503		100.0
KOG0306|consensus	888		100.0
KOG0641|consensus	350		100.0
KOG1332|consensus	299		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0276|consensus	794		100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0640|consensus	430		100.0
KOG0274|consensus	537		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0300|consensus	481		100.0
KOG0973|consensus	942		100.0
KOG0310|consensus	487		100.0
KOG2096|consensus	420		100.0
KOG0305|consensus	484		99.98
KOG0275|consensus	508		99.98
KOG0289|consensus	506		99.98
KOG0294|consensus	362		99.97
KOG0264|consensus	422		99.97
KOG0274|consensus	537		99.97
KOG0283|consensus	712		99.97
KOG0308|consensus	735		99.97
KOG0973|consensus	942		99.97
KOG0639|consensus	705		99.97
KOG2055|consensus	514		99.97
KOG0643|consensus	327		99.97
KOG0301|consensus	745		99.97
KOG0289|consensus	506		99.97
KOG0288|consensus	459		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG1539|consensus	910		99.97
KOG0641|consensus	350		99.97
KOG1408|consensus	1080		99.96
KOG2445|consensus	361		99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0646|consensus	476		99.96
KOG0299|consensus	479		99.96
KOG1332|consensus	299		99.96
KOG1273|consensus	405		99.96
KOG0300|consensus	481		99.96
KOG0294|consensus	362		99.96
KOG1446|consensus	311		99.96
KOG4283|consensus	397		99.96
KOG0640|consensus	430		99.96
KOG0267|consensus	825		99.96
KOG0772|consensus	641		99.96
KOG1274|consensus	933		99.96
KOG0647|consensus	347		99.95
KOG0269|consensus	839		99.95
KOG0264|consensus	422		99.95
KOG1063|consensus	764		99.95
KOG0321|consensus	720		99.95
KOG0270|consensus	463		99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0321|consensus	720		99.95
KOG0268|consensus	433		99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG1036|consensus	323		99.94
KOG2106|consensus	626		99.94
KOG0639|consensus	705		99.94
KOG0650|consensus	733		99.94
KOG2048|consensus	691		99.94
KOG2106|consensus	626		99.94
KOG4328|consensus	498		99.94
KOG0308|consensus	735		99.94
KOG0302|consensus	440		99.94
KOG1445|consensus	1012		99.94
KOG0305|consensus	484		99.94
KOG4378|consensus	673		99.94
KOG0269|consensus	839		99.93
KOG0301|consensus	745		99.93
KOG2055|consensus	514		99.93
KOG1539|consensus	910		99.93
KOG0307|consensus	1049		99.93
KOG1274|consensus	933		99.93
KOG1408|consensus	1080		99.93
KOG1034|consensus	385		99.93
KOG1009|consensus	434		99.93
KOG4283|consensus	397		99.92
KOG0642|consensus	577		99.92
KOG2096|consensus	420		99.92
KOG0322|consensus	323		99.92
KOG2919|consensus	406		99.92
KOG4328|consensus	498		99.92
KOG1273|consensus	405		99.92
KOG1538|consensus	1081		99.92
KOG2048|consensus	691		99.91
KOG0267|consensus	825		99.91
KOG1007|consensus	370		99.91
KOG4227|consensus	609		99.91
KOG0646|consensus	476		99.91
KOG1063|consensus	764		99.91
KOG0303|consensus	472		99.9
KOG1034|consensus	385		99.9
KOG0302|consensus	440		99.89
KOG1334|consensus	559		99.89
KOG0307|consensus	1049		99.89
KOG0644|consensus	1113		99.89
KOG0270|consensus	463		99.89
KOG4378|consensus	673		99.88
KOG0290|consensus	364		99.87
KOG1963|consensus	792		99.87
PRK11028	330	6-phosphogluconolactonase; Provisional	99.87
KOG1188|consensus	376		99.87
KOG1188|consensus	376		99.87
KOG1523|consensus	361		99.86
KOG1587|consensus	555		99.86
KOG0650|consensus	733		99.86
KOG1587|consensus	555		99.86
KOG2110|consensus	391		99.86
KOG1007|consensus	370		99.85
KOG1538|consensus	1081		99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG1009|consensus	434		99.84
KOG1517|consensus	1387		99.84
KOG2919|consensus	406		99.84
KOG0771|consensus	398		99.84
KOG0649|consensus	325		99.84
KOG0649|consensus	325		99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG2445|consensus	361		99.83
KOG1310|consensus	758		99.82
KOG0290|consensus	364		99.82
KOG1524|consensus	737		99.82
PRK01742	429	tolB translocation protein TolB; Provisional	99.81
KOG0771|consensus	398		99.81
KOG0642|consensus	577		99.81
KOG0303|consensus	472		99.81
KOG1963|consensus	792		99.8
KOG4227|consensus	609		99.79
KOG1517|consensus	1387		99.79
KOG1445|consensus	1012		99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
KOG2111|consensus	346		99.78
KOG2111|consensus	346		99.77
KOG2110|consensus	391		99.77
KOG1240|consensus	1431		99.77
KOG1272|consensus	545		99.76
KOG1524|consensus	737		99.76
KOG2394|consensus	636		99.75
KOG1272|consensus	545		99.75
KOG1523|consensus	361		99.75
PRK03629	429	tolB translocation protein TolB; Provisional	99.75
KOG1310|consensus	758		99.74
KOG3881|consensus	412		99.74
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.73
KOG0322|consensus	323		99.73
KOG1240|consensus	1431		99.72
KOG2321|consensus	703		99.71
KOG1354|consensus	433		99.71
PRK04922	433	tolB translocation protein TolB; Provisional	99.68
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
KOG0644|consensus	1113		99.68
KOG4497|consensus	447		99.68
PRK05137	435	tolB translocation protein TolB; Provisional	99.68
PRK03629	429	tolB translocation protein TolB; Provisional	99.67
PRK02889	427	tolB translocation protein TolB; Provisional	99.67
KOG2139|consensus	445		99.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
KOG4497|consensus	447		99.65
KOG2139|consensus	445		99.63
KOG1334|consensus	559		99.63
KOG1409|consensus	404		99.62
KOG3881|consensus	412		99.61
KOG2041|consensus	1189		99.61
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.61
KOG2315|consensus	566		99.6
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.6
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.59
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.58
PRK05137	435	tolB translocation protein TolB; Provisional	99.58
KOG2394|consensus	636		99.58
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.58
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.58
PRK00178	430	tolB translocation protein TolB; Provisional	99.57
PRK04792	448	tolB translocation protein TolB; Provisional	99.57
KOG2321|consensus	703		99.56
KOG4547|consensus	541		99.53
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.52
KOG0974|consensus	967		99.52
KOG0280|consensus	339		99.51
PRK04792	448	tolB translocation protein TolB; Provisional	99.49
PRK01029	428	tolB translocation protein TolB; Provisional	99.49
PRK00178	430	tolB translocation protein TolB; Provisional	99.48
KOG2314|consensus	698		99.47
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.45
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.44
KOG0280|consensus	339		99.44
KOG0974|consensus	967		99.44
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.43
PRK01029	428	tolB translocation protein TolB; Provisional	99.4
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.36
KOG1064|consensus	2439		99.36
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.35
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.34
COG4946	668	Uncharacterized protein related to the periplasmic	99.34
KOG1409|consensus	404		99.33
KOG4190|consensus	1034		99.32
COG4946	668	Uncharacterized protein related to the periplasmic	99.31
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.31
KOG4547|consensus	541		99.3
KOG2041|consensus	1189		99.29
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.28
KOG2315|consensus	566		99.28
KOG4532|consensus	344		99.27
KOG0309|consensus	1081		99.27
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.25
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.25
PRK04043	419	tolB translocation protein TolB; Provisional	99.25
KOG1912|consensus	1062		99.23
KOG1354|consensus	433		99.23
KOG2314|consensus	698		99.22
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.17
KOG4532|consensus	344		99.17
KOG0309|consensus	1081		99.14
KOG3914|consensus	390		99.12
KOG3914|consensus	390		99.12
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.12
KOG4190|consensus	1034		99.11
KOG0882|consensus	558		99.11
KOG1912|consensus	1062		99.11
KOG1064|consensus	2439		99.11
PRK04043	419	tolB translocation protein TolB; Provisional	99.11
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.1
KOG2695|consensus	425		99.09
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.06
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.02
KOG4714|consensus	319		99.01
KOG2695|consensus	425		98.99
KOG1832|consensus	1516		98.99
KOG0882|consensus	558		98.98
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.95
KOG1275|consensus	1118		98.94
KOG4714|consensus	319		98.94
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.94
KOG2066|consensus	846		98.92
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.92
KOG2066|consensus	846		98.9
KOG1008|consensus	783		98.89
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.87
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.87
KOG1920|consensus	1265		98.86
KOG1275|consensus	1118		98.85
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.82
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.8
KOG2114|consensus	933		98.8
KOG1645|consensus	463		98.8
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.7
KOG3621|consensus	726		98.67
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.65
KOG3617|consensus	1416		98.65
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.63
KOG1920|consensus	1265		98.62
KOG1832|consensus	1516		98.61
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.61
KOG2114|consensus	933		98.6
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.59
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.57
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.57
KOG1645|consensus	463		98.57
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.56
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.51
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.5
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.45
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.44
PRK02888	635	nitrous-oxide reductase; Validated	98.44
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.37
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.33
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.32
KOG4649|consensus	354		98.29
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.26
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.19
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.17
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.17
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.15
KOG1897|consensus	1096		98.14
KOG4649|consensus	354		98.12
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.12
KOG1008|consensus	783		98.12
KOG4640|consensus	665		98.12
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.1
KOG4441|consensus	571		98.04
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.01
PHA02713	557	hypothetical protein; Provisional	98.01
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.99
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.98
KOG3617|consensus	1416		97.98
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.95
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.87
KOG2444|consensus	238		97.84
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.84
COG3391	381	Uncharacterized conserved protein [Function unknow	97.83
PRK02888	635	nitrous-oxide reductase; Validated	97.81
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.81
KOG3621|consensus	726		97.81
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.81
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.78
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.78
KOG4441|consensus	571		97.75
KOG4640|consensus	665		97.74
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.69
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.67
PHA02713	557	hypothetical protein; Provisional	97.65
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.58
PRK13616	591	lipoprotein LpqB; Provisional	97.56
COG3391	381	Uncharacterized conserved protein [Function unknow	97.54
KOG2444|consensus	238		97.52
KOG2079|consensus	1206		97.52
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.47
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.46
KOG2395|consensus	644		97.4
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.38
PRK13616	591	lipoprotein LpqB; Provisional	97.33
KOG2395|consensus	644		97.3
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.29
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.28
KOG2079|consensus	1206		97.27
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.26
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.25
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.17
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.16
COG5276	370	Uncharacterized conserved protein [Function unknow	97.08
PHA03098	534	kelch-like protein; Provisional	97.03
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.99
PHA03098	534	kelch-like protein; Provisional	96.98
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.97
KOG4499|consensus	310		96.96
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.9
COG5276	370	Uncharacterized conserved protein [Function unknow	96.85
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.82
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.77
PHA02790	480	Kelch-like protein; Provisional	96.75
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.75
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.53
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.49
KOG3630|consensus	1405		96.42
PRK10115	686	protease 2; Provisional	96.38
PHA02790	480	Kelch-like protein; Provisional	96.34
KOG1897|consensus	1096		96.32
PRK10115	686	protease 2; Provisional	96.3
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.27
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.0
KOG2280|consensus	829		95.96
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.86
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.74
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.66
COG5167	776	VID27 Protein involved in vacuole import and degra	95.55
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.47
KOG2377|consensus	657		95.38
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.37
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.32
KOG1898|consensus	1205		95.32
PLN02153	341	epithiospecifier protein	95.31
KOG2377|consensus	657		95.31
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.29
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.12
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	95.04
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.04
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.04
PLN02193	470	nitrile-specifier protein	95.0
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.98
KOG3630|consensus	1405		94.91
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.77
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.75
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.68
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.61
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.61
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.59
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	94.43
KOG2063|consensus	877		94.43
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.4
KOG1916|consensus	1283		94.39
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.12
KOG2247|consensus	615		93.94
KOG1916|consensus	1283		93.65
COG5167	776	VID27 Protein involved in vacuole import and degra	93.53
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	93.43
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.19
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.13
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.02
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.94
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.9
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.86
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.75
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	92.68
KOG2247|consensus	615		92.59
KOG1983|consensus	993		92.48
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.35
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	92.33
PLN02193	470	nitrile-specifier protein	92.29
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.23
KOG2280|consensus	829		92.1
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.94
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.76
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.4
KOG3616|consensus	1636		91.32
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.01
KOG4460|consensus	741		90.97
KOG1896|consensus	1366		90.41
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.38
KOG1900|consensus	1311		90.27
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	90.2
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	89.72
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.6
KOG4460|consensus	741		89.4
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.33
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.69
KOG4499|consensus	310		88.62
PRK13684	334	Ycf48-like protein; Provisional	88.58
KOG0783|consensus	1267		88.48
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.34
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	88.11
PLN02153	341	epithiospecifier protein	88.04
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	87.89
PF14727	418	PHTB1_N: PTHB1 N-terminus	87.84
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	87.81
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	86.92
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.64
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	86.61
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	86.49
KOG3522|consensus	925		85.85
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	85.76
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	85.36
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	85.3
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	84.85
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.62
KOG4659|consensus	1899		84.06
KOG3616|consensus	1636		84.05
KOG1898|consensus	1205		83.14
PLN00033	398	photosystem II stability/assembly factor; Provisio	82.31

>KOG0647|consensus

Probab=100.00  E-value=4.5e-57  Score=339.36  Aligned_cols=332  Identities=63%  Similarity=1.125  Sum_probs=307.2

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      .+.+.+.+.....+.|.+++|||..  ..+++.+|.|++||+|+++..+...-+....|.++|.+++|+.||..+++|+.
T Consensus        15 ~~~kd~ev~~pP~DsIS~l~FSP~~--~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~   92 (347)
T KOG0647|consen   15 DPNKDYEVPNPPEDSISALAFSPQA--DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC   92 (347)
T ss_pred             CcccceecCCCcccchheeEecccc--CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc
Confidence            5788999999999999999999943  26777999999999999998666666778889999999999999999999999


Q ss_pred             CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEE
Q psy12911         97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVG  176 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (356)
                      |+.+++||+.+++...+..|.++|..+.|-+......|++|+.|.+|+.||++...++.++..++++++++...+.++++
T Consensus        93 Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVa  172 (347)
T KOG0647|consen   93 DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVA  172 (347)
T ss_pred             CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEE
Confidence            99999999999999999999999999999955555689999999999999999999999999999999999999999999


Q ss_pred             ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG  256 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (356)
                      ..++.|.+|++++...+.+....+.+.+++|+++.++    ....+.|+-+|.+.+..++...++.-+++++|+....  
T Consensus       173 ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d----~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~--  246 (347)
T KOG0647|consen  173 TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQD----KDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS--  246 (347)
T ss_pred             ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEec----CCceEeeeecceEEEEecCCCCccCceeEEEeccCCC--
Confidence            9999999999999999999999999999999999999    6778999999999999999877788899999997554  


Q ss_pred             CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCC
Q psy12911        257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPN  336 (356)
Q Consensus       257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~  336 (356)
                      .....|.|++|+|+|....|++++.||++.+||-.....+++.+.|..+|++++|+.+|.++|.+.++||+++.+.++|.
T Consensus       247 ~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~~n~~  326 (347)
T KOG0647|consen  247 VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWSKGHEGNNPQ  326 (347)
T ss_pred             CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecccccccccCCCC
Confidence            22257899999999999999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             CCceeeecccc-cccCCCCCC
Q psy12911        337 KGNAIFLRPCF-EDMKPRSGS  356 (356)
Q Consensus       337 ~~~~~~~~~~~-~~~~~~~~~  356 (356)
                      .+++|+++++. +|+|||++.
T Consensus       327 ~~~~I~l~~~~~~evK~r~~k  347 (347)
T KOG0647|consen  327 YKPQIFLHPVSTEEVKPRPKK  347 (347)
T ss_pred             CCCeEEEeeccccccccCCCC
Confidence            99999999999 599999874

>KOG0271|consensus

Probab=100.00  E-value=4.7e-53  Score=327.46  Aligned_cols=285  Identities=19%  Similarity=0.254  Sum_probs=253.1

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      .+....+.||.++|.|++|+|+|   ..|++|+.|.++|+||+.+  +.+..+.++|...|.|++|+|||+.||+|+.||
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g---~~l~tGsGD~TvR~WD~~T--eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg  179 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTG---SRLVTGSGDTTVRLWDLDT--ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG  179 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCC---ceEEecCCCceEEeeccCC--CCcceeecCCccEEEEEEECCCcchhhccccCC
Confidence            34445578999999999999999   9999999999999999998  677789999999999999999999999999999


Q ss_pred             eEEEEEcCCCceee--ecccCCCeeEEEEEe---CCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEEecCC-C
Q psy12911         99 TVKCWDLASNQSMQ--VAQHDAPVKTCHWIK---APNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCADVDY-P  171 (356)
Q Consensus        99 ~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~-~  171 (356)
                      +|++||.++++.+-  +.+|...|++++|.|   .|..++|++++.||.|+|||+..++++..+.+|.. +.|+.+.+ .
T Consensus       180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g  259 (480)
T KOG0271|consen  180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG  259 (480)
T ss_pred             eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc
Confidence            99999999998764  899999999999986   35778999999999999999999999999998874 67778876 4


Q ss_pred             eEEEEecCCeEEEEeCCCCccc------------------------------cc--------------------------
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQE------------------------------FK--------------------------  195 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~------------------------------~~--------------------------  195 (356)
                      ++++++.|++|++|+...+...                              ..                          
T Consensus       260 liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl  339 (480)
T KOG0271|consen  260 LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL  339 (480)
T ss_pred             eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence            8899999999999997653100                              00                          


Q ss_pred             ---------------------cccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        196 ---------------------KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       196 ---------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                                           .....|..-|..+.|+|+    +.++++++.|..|++|+.+.+  +.+.+|.+|-.   
T Consensus       340 VSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd----~r~IASaSFDkSVkLW~g~tG--k~lasfRGHv~---  410 (480)
T KOG0271|consen  340 VSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD----GRYIASASFDKSVKLWDGRTG--KFLASFRGHVA---  410 (480)
T ss_pred             EEecCCceEEEecccccccchhhhhchhhheeeEEECCC----ccEEEEeecccceeeeeCCCc--chhhhhhhccc---
Confidence                                 000124566899999999    899999999999999999877  78999999998   


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                              +|+.++|+.|.++|++|+.|.+++|||+++.++...+.+|.+.|.++.|+|||..+++|+.|.
T Consensus       411 --------~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdk  473 (480)
T KOG0271|consen  411 --------AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDK  473 (480)
T ss_pred             --------eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCce
Confidence                    999999999999999999999999999999999999999999999999999999999998654

>KOG0272|consensus

Probab=100.00  E-value=3.5e-49  Score=309.46  Aligned_cols=283  Identities=19%  Similarity=0.263  Sum_probs=257.0

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC--CCeEEEEcCCCeEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD--GTKVFMAGCDKTVK  101 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~  101 (356)
                      ..-+-+.+|..+.|++++   +.||||+.+|.++||+...  ......+.+|...|.++.|+|.  +..+|+|+.||+++
T Consensus       170 SQ~gd~rPis~~~fS~ds---~~laT~swsG~~kvW~~~~--~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk  244 (459)
T KOG0272|consen  170 SQVGDTRPISGCSFSRDS---KHLATGSWSGLVKVWSVPQ--CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK  244 (459)
T ss_pred             hhccCCCcceeeEeecCC---CeEEEeecCCceeEeecCC--cceeEEEeccccceeeEEEccCCCccceeeeccCCcee
Confidence            345678899999999999   9999999999999999988  3666899999999999999996  66899999999999


Q ss_pred             EEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEEEe
Q psy12911        102 CWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVVGT  177 (356)
Q Consensus       102 vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  177 (356)
                      +|++.+...+. +.+|...|..++|+  |+|++|+|++.|.+-++||+++++.+...++|..   .+++.++|..+++|+
T Consensus       245 lw~~~~e~~l~~l~gH~~RVs~VafH--PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG  322 (459)
T KOG0272|consen  245 LWKLSQETPLQDLEGHLARVSRVAFH--PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG  322 (459)
T ss_pred             eeccCCCcchhhhhcchhhheeeeec--CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccC
Confidence            99999877766 88999999999999  9999999999999999999999998888888774   456777888999999


Q ss_pred             cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCC
Q psy12911        178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG  257 (356)
Q Consensus       178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  257 (356)
                      .|..-++||++++.......  .|..+|..++|+|+    |..+++|+.|++++|||++..  ..++++.+|..      
T Consensus       323 lD~~~RvWDlRtgr~im~L~--gH~k~I~~V~fsPN----Gy~lATgs~Dnt~kVWDLR~r--~~ly~ipAH~n------  388 (459)
T KOG0272|consen  323 LDSLGRVWDLRTGRCIMFLA--GHIKEILSVAFSPN----GYHLATGSSDNTCKVWDLRMR--SELYTIPAHSN------  388 (459)
T ss_pred             ccchhheeecccCcEEEEec--ccccceeeEeECCC----ceEEeecCCCCcEEEeeeccc--ccceecccccc------
Confidence            99999999999987654433  48899999999999    899999999999999999887  56999999998      


Q ss_pred             cccccceEEEEEeC-CCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCC
Q psy12911        258 VQDIYAVNGIVFHP-VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNP  335 (356)
Q Consensus       258 ~~~~~~i~~i~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~  335 (356)
                           -|+.+.|+| .|.+|+|++.|++++||...++.+++.+.+|++.|.++++++|+.++++++   |++.+..|.|
T Consensus       389 -----lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s---~DRT~KLW~~  459 (459)
T KOG0272|consen  389 -----LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSS---FDRTIKLWRP  459 (459)
T ss_pred             -----hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEec---cCceeeeccC
Confidence                 899999999 679999999999999999999999999999999999999999999999998   6666766654

>KOG0286|consensus

Probab=100.00  E-value=7.5e-46  Score=277.83  Aligned_cols=289  Identities=16%  Similarity=0.220  Sum_probs=247.2

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      ..++..++++||.+.|.++.|++|.   ++|++++.||.+.|||.-+..+.  +.+.-....|..++|+|.|+++|+|+.
T Consensus        43 i~~~~rr~LkGH~~Ki~~~~ws~Ds---r~ivSaSqDGklIvWDs~TtnK~--haipl~s~WVMtCA~sPSg~~VAcGGL  117 (343)
T KOG0286|consen   43 IQMRTRRTLKGHLNKIYAMDWSTDS---RRIVSASQDGKLIVWDSFTTNKV--HAIPLPSSWVMTCAYSPSGNFVACGGL  117 (343)
T ss_pred             eeeeeEEEecccccceeeeEecCCc---CeEEeeccCCeEEEEEcccccce--eEEecCceeEEEEEECCCCCeEEecCc
Confidence            3456668999999999999999999   99999999999999999884443  455556789999999999999999999


Q ss_pred             CCeEEEEEcCCC--c----ee-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEEe-
Q psy12911         97 DKTVKCWDLASN--Q----SM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCAD-  167 (356)
Q Consensus        97 dg~i~vwd~~~~--~----~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~-  167 (356)
                      |+...||++.+.  +    .. .+.+|++.+.++.|.  . ...|++++.|.+..+||+++++.+..|.+|.. +++++ 
T Consensus       118 dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~--d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl  194 (343)
T KOG0286|consen  118 DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL--D-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL  194 (343)
T ss_pred             CceeEEEecccccccccceeeeeecCccceeEEEEEc--C-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence            999999999865  2    22 278999999999996  5 56799999999999999999999999998873 55544 


Q ss_pred             -c-CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911        168 -V-DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT  245 (356)
Q Consensus       168 -~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  245 (356)
                       + +++.+++|+.|+..++||++.+..  ......|...|.+++|+|+    +..+++|+.|+..++||++..  ..+..
T Consensus       195 ~p~~~ntFvSg~cD~~aklWD~R~~~c--~qtF~ghesDINsv~ffP~----G~afatGSDD~tcRlyDlRaD--~~~a~  266 (343)
T KOG0286|consen  195 SPSDGNTFVSGGCDKSAKLWDVRSGQC--VQTFEGHESDINSVRFFPS----GDAFATGSDDATCRLYDLRAD--QELAV  266 (343)
T ss_pred             CCCCCCeEEecccccceeeeeccCcce--eEeecccccccceEEEccC----CCeeeecCCCceeEEEeecCC--cEEee
Confidence             4 457999999999999999999843  2333468899999999999    899999999999999999876  33444


Q ss_pred             eeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        246 FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +.....         ..+|++++||..|++|++|..|.++.+||.-.++.+..+.+|++.|+++..+|||.-|++||   
T Consensus       267 ys~~~~---------~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgS---  334 (343)
T KOG0286|consen  267 YSHDSI---------ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGS---  334 (343)
T ss_pred             eccCcc---------cCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecc---
Confidence            442221         12799999999999999999999999999999999999999999999999999999999998   


Q ss_pred             CcCCCccC
Q psy12911        326 WSKGHEHN  333 (356)
Q Consensus       326 ~~~~~~~~  333 (356)
                      |+...++|
T Consensus       335 WDs~lriW  342 (343)
T KOG0286|consen  335 WDSTLRIW  342 (343)
T ss_pred             hhHheeec
Confidence            66666655

>KOG1036|consensus

Probab=100.00  E-value=1.3e-44  Score=273.31  Aligned_cols=316  Identities=37%  Similarity=0.715  Sum_probs=279.2

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      .+++-....+.|+++.|+|.+   +.|++++.||.+++||+...  .+ +....|..++.+++|.++ ..+++|+.||.|
T Consensus         5 ~~~l~npP~d~IS~v~f~~~~---~~LLvssWDgslrlYdv~~~--~l-~~~~~~~~plL~c~F~d~-~~~~~G~~dg~v   77 (323)
T KOG1036|consen    5 EFELENPPEDGISSVKFSPSS---SDLLVSSWDGSLRLYDVPAN--SL-KLKFKHGAPLLDCAFADE-STIVTGGLDGQV   77 (323)
T ss_pred             ccccCCCChhceeeEEEcCcC---CcEEEEeccCcEEEEeccch--hh-hhheecCCceeeeeccCC-ceEEEeccCceE
Confidence            344555678999999999988   88889999999999999883  33 333358999999999974 589999999999


Q ss_pred             EEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCC
Q psy12911        101 KCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR  180 (356)
Q Consensus       101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  180 (356)
                      +++|+++++...+..|..+|.++.++  +....+++|+.|++|++||.+.......+.....+.+++..++.|++|+.+.
T Consensus        78 r~~Dln~~~~~~igth~~~i~ci~~~--~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r  155 (323)
T KOG1036|consen   78 RRYDLNTGNEDQIGTHDEGIRCIEYS--YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDR  155 (323)
T ss_pred             EEEEecCCcceeeccCCCceEEEEee--ccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCc
Confidence            99999999999999999999999999  7778899999999999999999888888888889999999999999999999


Q ss_pred             eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC--CCCCcceeeeecCCCCCCCc
Q psy12911        181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA--NPKDNFTFKCHRSNGGAGGV  258 (356)
Q Consensus       181 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~  258 (356)
                      .+.+||+++............+.+++|+++.|+    +..+++++-||.+.+=.++..  .....+.|++|+...  .+.
T Consensus       156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn----~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~--~~~  229 (323)
T KOG1036|consen  156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPN----GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE--KDT  229 (323)
T ss_pred             eEEEEEcccccchhhhccccceeEEEEEEEecC----CCceEEEeecceEEEEccCCchHHhhhceeEEeeeccc--CCc
Confidence            999999999988887778889999999999998    778999999999998777654  224567899998744  455


Q ss_pred             ccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCC
Q psy12911        259 QDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKG  338 (356)
Q Consensus       259 ~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~  338 (356)
                      ...++|++|+|||-...||||+.||.|.+||+.+.+.+..+......|.+++|+.||..||+|+++-+......  +...
T Consensus       230 ~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~--~~~~  307 (323)
T KOG1036|consen  230 EIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYERADTP--THER  307 (323)
T ss_pred             eEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhhcCCCC--CCCC
Confidence            56679999999999999999999999999999999999999888889999999999999999999877766554  5557


Q ss_pred             ceeeeccccc-ccCCC
Q psy12911        339 NAIFLRPCFE-DMKPR  353 (356)
Q Consensus       339 ~~~~~~~~~~-~~~~~  353 (356)
                      +.++++.+.+ |.|||
T Consensus       308 ~~i~I~~l~d~e~~pk  323 (323)
T KOG1036|consen  308 NAIFIRDLTDYETKPK  323 (323)
T ss_pred             CceEEEeccccccCCC
Confidence            8999999998 99997

>KOG0315|consensus

Probab=100.00  E-value=1.1e-42  Score=255.26  Aligned_cols=272  Identities=17%  Similarity=0.233  Sum_probs=230.5

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce---eeecccCCCee
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS---MQVAQHDAPVK  121 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~v~  121 (356)
                      -+|++++.|.+||+|...+  ....++++...+.|+.+...|+++.||+++. ..|++||+++++.   ..+.+|+..|.
T Consensus        11 viLvsA~YDhTIRfWqa~t--G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALT--GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             eEEEeccCcceeeeeehhc--CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence            6899999999999999998  3455788877889999999999999999875 6799999998765   34888999999


Q ss_pred             EEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccC
Q psy12911        122 TCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES  199 (356)
Q Consensus       122 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  199 (356)
                      ++.|.  .+|+.+++|++||+++|||++...+.+.++...  +.+++.++...|+++..+|.|++||+.........+. 
T Consensus        88 aVgF~--~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP-  164 (311)
T KOG0315|consen   88 AVGFQ--CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP-  164 (311)
T ss_pred             EEEEe--ecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC-
Confidence            99999  999999999999999999999987777777655  4566666777999999999999999998743333332 


Q ss_pred             cccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC----CCCcceeeeecCCCCCCCcccccceEEEEEeCCCCE
Q psy12911        200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN----PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGT  275 (356)
Q Consensus       200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~  275 (356)
                      .....+.++.+.|+    +..++.+...|..++|++-...    .+++..++.|..           .+..+.+|||+++
T Consensus       165 e~~~~i~sl~v~~d----gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-----------~il~C~lSPd~k~  229 (311)
T KOG0315|consen  165 EDDTSIQSLTVMPD----GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG-----------HILRCLLSPDVKY  229 (311)
T ss_pred             CCCcceeeEEEcCC----CcEEEEecCCccEEEEEccCCCccccceEhhheecccc-----------eEEEEEECCCCcE
Confidence            34478999999999    8899999999999999985432    356677888887           8999999999999


Q ss_pred             EEEEcCCCeEEEEEcCcc-eecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCce
Q psy12911        276 LATVGSEGTFSFWDKDAR-TKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNA  340 (356)
Q Consensus       276 l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~  340 (356)
                      ||+++.|.+++||+.++. +.-..+++|..++++++||.||+||++|++|.   ..++|++..++.
T Consensus       230 lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~---~~rlW~~~~~k~  292 (311)
T KOG0315|consen  230 LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDH---TARLWDLSAGKE  292 (311)
T ss_pred             EEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCC---ceeecccccCce
Confidence            999999999999999987 55667889999999999999999999999864   445566665543

>KOG0279|consensus

Probab=100.00  E-value=2.9e-42  Score=256.97  Aligned_cols=281  Identities=19%  Similarity=0.276  Sum_probs=234.8

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc---eeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK---TIPKSMQGMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      .....++++|.+.|+.++..+.+  .+.+++++.|.++.+|++.....   ...+.+.+|+..|..+..++||++.++++
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~--~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKN--SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCC--CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence            34556799999999999999986  58999999999999999976442   34688999999999999999999999999


Q ss_pred             CCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-----eeEEEecC
Q psy12911         96 CDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-----RCYCADVD  169 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~  169 (356)
                      .|+++++||+.+++..+ +.+|...|.+++|+  +|.+.+++|+.|.+|++|++.. .+..++....     .++++++.
T Consensus        83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s--~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~  159 (315)
T KOG0279|consen   83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFS--TDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPN  159 (315)
T ss_pred             ccceEEEEEecCCcEEEEEEecCCceEEEEec--CCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCC
Confidence            99999999999987766 89999999999999  9999999999999999999754 4555554433     35566666


Q ss_pred             --CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911        170 --YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK  247 (356)
Q Consensus       170 --~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  247 (356)
                        .+.++.++.|+++++||+++.+..  .....|.+.++.++++||    |..+++|+.||.+.+||++..  +.++++.
T Consensus       160 ~~~p~Ivs~s~DktvKvWnl~~~~l~--~~~~gh~~~v~t~~vSpD----GslcasGgkdg~~~LwdL~~~--k~lysl~  231 (315)
T KOG0279|consen  160 ESNPIIVSASWDKTVKVWNLRNCQLR--TTFIGHSGYVNTVTVSPD----GSLCASGGKDGEAMLWDLNEG--KNLYSLE  231 (315)
T ss_pred             CCCcEEEEccCCceEEEEccCCcchh--hccccccccEEEEEECCC----CCEEecCCCCceEEEEEccCC--ceeEecc
Confidence              468999999999999999986543  333357889999999999    899999999999999999877  5577776


Q ss_pred             eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC---------ccceEEEEECCCCCEE
Q psy12911        248 CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM---------DMSISTCALNHNGQIF  318 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l  318 (356)
                      +..            .|.+++|+|+...|+.+. +..|+|||++++.++..++..         .-...+++||+||..|
T Consensus       232 a~~------------~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL  298 (315)
T KOG0279|consen  232 AFD------------IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL  298 (315)
T ss_pred             CCC------------eEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence            554            799999999877776664 456999999999887766421         2245689999999999


Q ss_pred             EEEeccC
Q psy12911        319 AYAVSYD  325 (356)
Q Consensus       319 ~~~s~~d  325 (356)
                      ..|-.|.
T Consensus       299 f~g~td~  305 (315)
T KOG0279|consen  299 FAGYTDN  305 (315)
T ss_pred             EeeecCC
Confidence            9997654

>KOG0265|consensus

Probab=100.00  E-value=5.1e-43  Score=263.57  Aligned_cols=290  Identities=19%  Similarity=0.219  Sum_probs=247.1

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      -..+...+.+|++.|+.+.|+|+|   .+||+|+.|..|.+|++... ..-...+++|+++|..+.|.+|++.|++++.|
T Consensus        36 l~ap~m~l~gh~geI~~~~F~P~g---s~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtD  111 (338)
T KOG0265|consen   36 LQAPIMLLPGHKGEIYTIKFHPDG---SCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRDGSHILSCGTD  111 (338)
T ss_pred             ccchhhhcCCCcceEEEEEECCCC---CeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccCCCEEEEecCC
Confidence            455677789999999999999999   99999999999999998763 33346788999999999999999999999999


Q ss_pred             CeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEec--CCCeEE
Q psy12911         98 KTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADV--DYPLAV  174 (356)
Q Consensus        98 g~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~  174 (356)
                      .+|+.||+++|+.++ ...|..-|+++.-. .-...++.+++.|+++++||+++...++++....+..++.+  .++.++
T Consensus       112 k~v~~wD~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  112 KTVRGWDAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             ceEEEEecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccccee
Confidence            999999999999987 88899999998844 12345677888999999999999999999976665555554  557999


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC--CcceeeeecCC
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK--DNFTFKCHRSN  252 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~--~~~~~~~~~~~  252 (356)
                      +|+-|+.|++||++.+..  ......|...|+.+..+++    +..+.+-+.|..+++||++...+.  ++..+.+|...
T Consensus       191 sggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~----gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn  264 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSRY----GSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN  264 (338)
T ss_pred             eccccCceeeeccccCcc--eEEeecccCceeeEEeccC----CCccccccccceEEEEEecccCCCCceEEEeecchhh
Confidence            999999999999988653  3344568899999999999    889999999999999999876542  34555555431


Q ss_pred             CCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        253 GGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       253 ~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ..       .....++|+|+++.+.+|+.|..+++||......+..+.+|.+.|++++|+|...+|.++++|.
T Consensus       265 fe-------knlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk  330 (338)
T KOG0265|consen  265 FE-------KNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDK  330 (338)
T ss_pred             hh-------hhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence            11       1466789999999999999999999999999999999999999999999999999999999764

>KOG0295|consensus

Probab=100.00  E-value=9.8e-43  Score=268.46  Aligned_cols=284  Identities=18%  Similarity=0.284  Sum_probs=252.5

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      .....+.+|..+|+.+-|+|+-   .++++++.|++|++||..+  ..+...+++|...|..++|+..|++|++++.|-.
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~---~~v~~as~d~tikv~D~~t--g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~  173 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSE---ALVVSASEDATIKVFDTET--GELERSLRGHTDSVFDISFDASGKYLATCSSDLS  173 (406)
T ss_pred             CchhhhhccccceeeeeeccCc---eEEEEecCCceEEEEEccc--hhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence            4445567799999999999998   8999999999999999998  3447899999999999999999999999999999


Q ss_pred             EEEEEcCC-Cceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEE
Q psy12911        100 VKCWDLAS-NQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAV  174 (356)
Q Consensus       100 i~vwd~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~  174 (356)
                      +++||..+ .++++ ..+|...|.++.|-  |.|.+|++++.|.+|+.|++.++.+++++.++..   .+.+..++..++
T Consensus       174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~--P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~A  251 (406)
T KOG0295|consen  174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFL--PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIA  251 (406)
T ss_pred             hhheeHHHHHHHHHHhcCcccceeeEEEE--ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEE
Confidence            99999987 34444 78999999999999  8899999999999999999999999999999874   566677778999


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCC-----------CCCeEEEeecCCeEEEEEeCCCCCCCc
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKK-----------QPAGYGLGSVEGRVAIQYVNPANPKDN  243 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~~dg~i~i~~~~~~~~~~~  243 (356)
                      +++.|.++++|-+.++..  +.....|..++.|++|.|....           .+..+.+++.|+.|++||+..+  .++
T Consensus       252 s~s~dqtl~vW~~~t~~~--k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg--~cL  327 (406)
T KOG0295|consen  252 SCSNDQTLRVWVVATKQC--KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG--MCL  327 (406)
T ss_pred             ecCCCceEEEEEeccchh--hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC--eEE
Confidence            999999999999998743  2333457889999999876321           2358999999999999999877  889


Q ss_pred             ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        244 FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      .++.+|..           +|..++|+|.|+||+++.+|+++++||++++++.+.+..|+.-|+++.|+.+..++++|+-
T Consensus       328 ~tL~ghdn-----------wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV  396 (406)
T KOG0295|consen  328 FTLVGHDN-----------WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV  396 (406)
T ss_pred             EEEecccc-----------eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccc
Confidence            99999998           9999999999999999999999999999999999999999999999999999999999985


Q ss_pred             cC
Q psy12911        324 YD  325 (356)
Q Consensus       324 ~d  325 (356)
                      |.
T Consensus       397 dq  398 (406)
T KOG0295|consen  397 DQ  398 (406)
T ss_pred             cc
Confidence            54

>KOG0272|consensus

Probab=100.00  E-value=2.7e-43  Score=276.46  Aligned_cols=253  Identities=18%  Similarity=0.200  Sum_probs=225.8

Q ss_pred             CCCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE
Q psy12911         14 STPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM   93 (356)
Q Consensus        14 ~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~   93 (356)
                      ......+...++.||.+.|.++.|+|.. +...||+|+.||++++|++++  ..++..+.+|...|..++|+|+|++|++
T Consensus       202 W~~~~~~~~~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~--e~~l~~l~gH~~RVs~VafHPsG~~L~T  278 (459)
T KOG0272|consen  202 WSVPQCNLLQTLRGHTSRVGAAVFHPVD-SDLNLATASADGTVKLWKLSQ--ETPLQDLEGHLARVSRVAFHPSGKFLGT  278 (459)
T ss_pred             eecCCcceeEEEeccccceeeEEEccCC-CccceeeeccCCceeeeccCC--CcchhhhhcchhhheeeeecCCCceeee
Confidence            3444457788999999999999999982 126899999999999999987  4667899999999999999999999999


Q ss_pred             EcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-e--EEEecC
Q psy12911         94 AGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-C--YCADVD  169 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~--~~~~~~  169 (356)
                      ++.|.+-++||++++..+. ..+|...|.+++|.  +||.++++|+.|..-+|||+++++++..+.+|.. +  +.++++
T Consensus       279 asfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~--~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN  356 (459)
T KOG0272|consen  279 ASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ--PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN  356 (459)
T ss_pred             cccccchhhcccccchhhHhhcccccccceeEec--CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCC
Confidence            9999999999999988765 78999999999999  9999999999999999999999999999999874 4  455666


Q ss_pred             CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH  249 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  249 (356)
                      |..+++|+.|++++|||++....  ......|..-|+.+.|.|..   +.+|++++.|++++||..+..  .++.++.+|
T Consensus       357 Gy~lATgs~Dnt~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~---g~fL~TasyD~t~kiWs~~~~--~~~ksLaGH  429 (459)
T KOG0272|consen  357 GYHLATGSSDNTCKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQE---GYFLVTASYDNTVKIWSTRTW--SPLKSLAGH  429 (459)
T ss_pred             ceEEeecCCCCcEEEeeeccccc--ceecccccchhhheEecccC---CeEEEEcccCcceeeecCCCc--ccchhhcCC
Confidence            67999999999999999998765  22334688899999999953   889999999999999988766  789999999


Q ss_pred             cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD  289 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd  289 (356)
                      ..           .|.+++++|++.++++++.|.++++|.
T Consensus       430 e~-----------kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  430 EG-----------KVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cc-----------ceEEEEeccCCceEEEeccCceeeecc
Confidence            98           899999999999999999999999995

>KOG0273|consensus

Probab=100.00  E-value=1.3e-41  Score=270.64  Aligned_cols=281  Identities=17%  Similarity=0.231  Sum_probs=241.4

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceee--eee----------ccCCcceeEEEEccCC
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIP--KSM----------QGMSEPVLDVAWIDDG   88 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~----------~~~~~~v~~~~~s~~~   88 (356)
                      .++++. |+.+|.+++|+|..  ..++++|+.|-..++|++........  ..+          ...+..|++++|+.+|
T Consensus       171 ~~kvl~-~~~~V~~~~WnP~~--~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G  247 (524)
T KOG0273|consen  171 KAKVLR-HESEVFICAWNPLR--DGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG  247 (524)
T ss_pred             ceeecc-CCCceEEEecCchh--hhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC
Confidence            345555 99999999999987  23999999999999999875111110  011          1134689999999999


Q ss_pred             CeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCee-EEEe
Q psy12911         89 TKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERC-YCAD  167 (356)
Q Consensus        89 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~  167 (356)
                      ..||+|+.||.+++|+........+..|.++|.++.|+  .+|.+|++++.|+++.+||..+++..+.+..+... +.+.
T Consensus       248 ~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWn--k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVd  325 (524)
T KOG0273|consen  248 TLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWN--KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVD  325 (524)
T ss_pred             CeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEc--CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceE
Confidence            99999999999999998877777789999999999999  99999999999999999999999999999988765 6666


Q ss_pred             cCC-CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee
Q psy12911        168 VDY-PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       168 ~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~  246 (356)
                      +.. +.+++.+.|+.|+++.+..........  .|.+.|.++.|.|.    +.+|++++.|++++||.....  .....+
T Consensus       326 W~~~~~F~ts~td~~i~V~kv~~~~P~~t~~--GH~g~V~alk~n~t----g~LLaS~SdD~TlkiWs~~~~--~~~~~l  397 (524)
T KOG0273|consen  326 WQSNDEFATSSTDGCIHVCKVGEDRPVKTFI--GHHGEVNALKWNPT----GSLLASCSDDGTLKIWSMGQS--NSVHDL  397 (524)
T ss_pred             EecCceEeecCCCceEEEEEecCCCcceeee--cccCceEEEEECCC----CceEEEecCCCeeEeeecCCC--cchhhh
Confidence            655 588999999999999998765443333  38999999999999    899999999999999998765  567888


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCC---------CEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCE
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVH---------GTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI  317 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  317 (356)
                      .+|..           .|..+.|+|+|         ..+++++.|++|++||+..+.+++.|..|..+|.+++|||+|+|
T Consensus       398 ~~Hsk-----------ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~y  466 (524)
T KOG0273|consen  398 QAHSK-----------EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRY  466 (524)
T ss_pred             hhhcc-----------ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcE
Confidence            88887           89999999975         47999999999999999999999999999999999999999999


Q ss_pred             EEEEeccC
Q psy12911        318 FAYAVSYD  325 (356)
Q Consensus       318 l~~~s~~d  325 (356)
                      +|+|+-|+
T Consensus       467 lAsGs~dg  474 (524)
T KOG0273|consen  467 LASGSLDG  474 (524)
T ss_pred             EEecCCCC
Confidence            99998655

>KOG0316|consensus

Probab=100.00  E-value=3.1e-41  Score=245.69  Aligned_cols=282  Identities=17%  Similarity=0.283  Sum_probs=249.3

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      ..|.+...++..|+++|.++.|+-+|   +|.++++.|.+|++|+...  ..+++++.+|...|..++.+.|+..+++|+
T Consensus         4 e~ptkr~~~l~~~qgaV~avryN~dG---nY~ltcGsdrtvrLWNp~r--g~liktYsghG~EVlD~~~s~Dnskf~s~G   78 (307)
T KOG0316|consen    4 ELPTKRLSILDCAQGAVRAVRYNVDG---NYCLTCGSDRTVRLWNPLR--GALIKTYSGHGHEVLDAALSSDNSKFASCG   78 (307)
T ss_pred             cCcchhceeecccccceEEEEEccCC---CEEEEcCCCceEEeecccc--cceeeeecCCCceeeeccccccccccccCC
Confidence            45667788899999999999999999   9999999999999999887  466799999999999999999999999999


Q ss_pred             CCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC--CceEEEeC-CCeeEEEecCCC
Q psy12911         96 CDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP--QPIMTINL-PERCYCADVDYP  171 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~-~~~~~~~~~~~~  171 (356)
                      .|..+.+||+++|+..+ +.+|.+.|+.++|+  .+...+++|+.|.++++||.++.  ++++.+.. ...+.++.....
T Consensus        79 gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h  156 (307)
T KOG0316|consen   79 GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH  156 (307)
T ss_pred             CCceEEEEEcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc
Confidence            99999999999999987 89999999999999  99999999999999999999875  67787764 446888999999


Q ss_pred             eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS  251 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  251 (356)
                      .+++|+.||+++.||++.+....    .....+|++++|+++    ++..++++.++.+++.|-+++  +.+..+++|..
T Consensus       157 eIvaGS~DGtvRtydiR~G~l~s----Dy~g~pit~vs~s~d----~nc~La~~l~stlrLlDk~tG--klL~sYkGhkn  226 (307)
T KOG0316|consen  157 EIVAGSVDGTVRTYDIRKGTLSS----DYFGHPITSVSFSKD----GNCSLASSLDSTLRLLDKETG--KLLKSYKGHKN  226 (307)
T ss_pred             EEEeeccCCcEEEEEeecceeeh----hhcCCcceeEEecCC----CCEEEEeeccceeeecccchh--HHHHHhccccc
Confidence            99999999999999999885432    235688999999999    889999999999999877666  88999999986


Q ss_pred             CCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccc-eEEEEECCCCCEEEEEec
Q psy12911        252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMS-ISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~s~  323 (356)
                      ..         .-..++++.....+++|++||.|++||+.....+..+..+... |.+++++|.-.-++++.+
T Consensus       227 ~e---------ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~  290 (307)
T KOG0316|consen  227 ME---------YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG  290 (307)
T ss_pred             ce---------eeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC
Confidence            22         2345667777789999999999999999999999999988887 899999998877777764

>KOG0315|consensus

Probab=100.00  E-value=6.6e-41  Score=245.87  Aligned_cols=273  Identities=19%  Similarity=0.221  Sum_probs=237.3

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      +-...++++...+.|+.+...|++   +.||+++. ..||+||+.++...++.++.+|...|+++.|..+|+.+++|++|
T Consensus        29 tG~C~rTiqh~dsqVNrLeiTpdk---~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD  104 (311)
T KOG0315|consen   29 TGICSRTIQHPDSQVNRLEITPDK---KDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED  104 (311)
T ss_pred             cCeEEEEEecCccceeeEEEcCCc---chhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC
Confidence            345566677778899999999998   88988874 58999999997776889999999999999999999999999999


Q ss_pred             CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC----CeeEEEecCCCeE
Q psy12911         98 KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP----ERCYCADVDYPLA  173 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~  173 (356)
                      |+++|||++...+.+...|..+|+++..+  |+...|++|..+|.|++||+....+...+-..    -+.+.+.+++..+
T Consensus       105 gt~kIWdlR~~~~qR~~~~~spVn~vvlh--pnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml  182 (311)
T KOG0315|consen  105 GTVKIWDLRSLSCQRNYQHNSPVNTVVLH--PNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSML  182 (311)
T ss_pred             ceEEEEeccCcccchhccCCCCcceEEec--CCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEE
Confidence            99999999998888888999999999999  88899999999999999999988665554432    2467788899999


Q ss_pred             EEEecCCeEEEEeCCCCccc----cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee
Q psy12911        174 VVGTAGRGIVLYQLEGKPQE----FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH  249 (356)
Q Consensus       174 ~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  249 (356)
                      +.+...|..++|++-+....    .......|...+....++|+    .++|++++.|.+++||+.+.. .+....+.+|
T Consensus       183 ~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd----~k~lat~ssdktv~iwn~~~~-~kle~~l~gh  257 (311)
T KOG0315|consen  183 AAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD----VKYLATCSSDKTVKIWNTDDF-FKLELVLTGH  257 (311)
T ss_pred             EEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC----CcEEEeecCCceEEEEecCCc-eeeEEEeecC
Confidence            99999999999999774321    11123457788999999999    899999999999999999876 5677788898


Q ss_pred             cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEEC
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALN  312 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  312 (356)
                      ..           +++.++||.||.||++|+.|+.+++|++..++.+....+|.....+++..
T Consensus       258 ~r-----------WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  258 QR-----------WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             Cc-----------eEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            87           99999999999999999999999999999999999999998887777653

>KOG0271|consensus

Probab=100.00  E-value=1.5e-41  Score=263.69  Aligned_cols=251  Identities=17%  Similarity=0.247  Sum_probs=214.9

Q ss_pred             CCCCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-----C
Q psy12911         13 TSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-----D   87 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~   87 (356)
                      ..+.....+..+.++|...|.|++|+|||   +.||+|+.||+|++||.++ +++....+.+|...|++++|.|     .
T Consensus       141 ~WD~~TeTp~~t~KgH~~WVlcvawsPDg---k~iASG~~dg~I~lwdpkt-g~~~g~~l~gH~K~It~Lawep~hl~p~  216 (480)
T KOG0271|consen  141 LWDLDTETPLFTCKGHKNWVLCVAWSPDG---KKIASGSKDGSIRLWDPKT-GQQIGRALRGHKKWITALAWEPLHLVPP  216 (480)
T ss_pred             eeccCCCCcceeecCCccEEEEEEECCCc---chhhccccCCeEEEecCCC-CCcccccccCcccceeEEeecccccCCC
Confidence            34556677888999999999999999999   9999999999999999988 5667789999999999999976     6


Q ss_pred             CCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-----
Q psy12911         88 GTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-----  161 (356)
Q Consensus        88 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----  161 (356)
                      .++||+++.||.|+|||+..+.++. +.+|+.+|+|+.|-   ...+|++|+.|++|++|+...|.+.+.+++|.     
T Consensus       217 ~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG---G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~  293 (480)
T KOG0271|consen  217 CRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG---GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNH  293 (480)
T ss_pred             ccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc---CCceEEecCCCceEEEEEccchhHHHhhcccchheee
Confidence            6799999999999999999998877 88999999999994   44589999999999999977655444333221     


Q ss_pred             -----------------------------------------------------------------------------eeE
Q psy12911        162 -----------------------------------------------------------------------------RCY  164 (356)
Q Consensus       162 -----------------------------------------------------------------------------~~~  164 (356)
                                                                                                   +.+
T Consensus       294 lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V  373 (480)
T KOG0271|consen  294 LALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHV  373 (480)
T ss_pred             eeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeE
Confidence                                                                                         134


Q ss_pred             EEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911        165 CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF  244 (356)
Q Consensus       165 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  244 (356)
                      .+++++.++++++-|..|++||.++++..  .....|-..|..++|+.|    .+++++|+.|.++++|+++..  +...
T Consensus       374 ~fSPd~r~IASaSFDkSVkLW~g~tGk~l--asfRGHv~~VYqvawsaD----sRLlVS~SkDsTLKvw~V~tk--Kl~~  445 (480)
T KOG0271|consen  374 SFSPDGRYIASASFDKSVKLWDGRTGKFL--ASFRGHVAAVYQVAWSAD----SRLLVSGSKDSTLKVWDVRTK--KLKQ  445 (480)
T ss_pred             EECCCccEEEEeecccceeeeeCCCcchh--hhhhhccceeEEEEeccC----ccEEEEcCCCceEEEEEeeee--eecc
Confidence            45666678888888999999998887532  223357788999999999    889999999999999999887  7788


Q ss_pred             eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911        245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD  289 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd  289 (356)
                      .+.+|..           .|.++.|+|||..+++|+.|..+++|.
T Consensus       446 DLpGh~D-----------EVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  446 DLPGHAD-----------EVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cCCCCCc-----------eEEEEEecCCCceeecCCCceEEEeec
Confidence            9999998           899999999999999999999999995

>KOG0282|consensus

Probab=100.00  E-value=4.4e-42  Score=274.13  Aligned_cols=297  Identities=18%  Similarity=0.269  Sum_probs=251.7

Q ss_pred             CCCCCCceEEeCCCCCCeeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE
Q psy12911         15 TPNPNKDFEVVSPPEDSISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM   93 (356)
Q Consensus        15 ~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~   93 (356)
                      ...|.+.+.++.+|...|+++.|.| .+   .+|++++.|+.|+||++.. ...+++++.+|..+|.+++|+++|..+++
T Consensus       200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~---hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS  275 (503)
T KOG0282|consen  200 CYLPKKLSHNLSGHTKGVSAIQWFPKKG---HLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLS  275 (503)
T ss_pred             eeccHhheeeccCCccccchhhhcccee---eEEEecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeee
Confidence            3457778899999999999999999 66   9999999999999999988 45666999999999999999999999999


Q ss_pred             EcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecC
Q psy12911         94 AGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVD  169 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~  169 (356)
                      ++.|+.|++||+++|+++........++++.|+  |++ +.+++|+.|+.|+.||+++++.++.+..+-.   .+.+-..
T Consensus       276 ~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~--pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~  353 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFH--PDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE  353 (503)
T ss_pred             eecceeeeeeccccceEEEEEecCCCceeeecC--CCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC
Confidence            999999999999999999877788899999999  666 8899999999999999999999988886653   3445566


Q ss_pred             CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC-CCCcceeee
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN-PKDNFTFKC  248 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~-~~~~~~~~~  248 (356)
                      +..+++.+.|+++++|+.+..-. .+...........++..+|+    +..++.-+.|..|.++.+...- ......+++
T Consensus       354 g~rFissSDdks~riWe~~~~v~-ik~i~~~~~hsmP~~~~~P~----~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG  428 (503)
T KOG0282|consen  354 GRRFISSSDDKSVRIWENRIPVP-IKNIADPEMHTMPCLTLHPN----GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG  428 (503)
T ss_pred             CceEeeeccCccEEEEEcCCCcc-chhhcchhhccCcceecCCC----CCeehhhccCceEEEEecccccccCHhhhhcc
Confidence            77999999999999999987643 33344455677889999999    7899999999999999875432 234456777


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcC
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSK  328 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~  328 (356)
                      |...+         .-..+.|||||.+|++|+.||.+.+||.++-+++..+++|.+++..+.|+|...-.+++++  |..
T Consensus       429 h~vaG---------ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~--w~G  497 (503)
T KOG0282|consen  429 HSVAG---------YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCG--WDG  497 (503)
T ss_pred             eeccC---------ceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecc--cCc
Confidence            77533         5668999999999999999999999999999999999999999999999998755444443  555


Q ss_pred             CCccC
Q psy12911        329 GHEHN  333 (356)
Q Consensus       329 ~~~~~  333 (356)
                      .+.+|
T Consensus       498 ~Ikiw  502 (503)
T KOG0282|consen  498 LIKIW  502 (503)
T ss_pred             eeEec
Confidence            55544

>KOG0285|consensus

Probab=100.00  E-value=1.8e-40  Score=255.66  Aligned_cols=281  Identities=20%  Similarity=0.334  Sum_probs=243.6

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      .|.+..+++++|.+.|.|+++.|.+   .++++|+.|++++|||+.+  ..+..++.+|...|..+++|+...|+++++.
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n---~wf~tgs~DrtikIwDlat--g~LkltltGhi~~vr~vavS~rHpYlFs~ge  213 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGN---EWFATGSADRTIKIWDLAT--GQLKLTLTGHIETVRGVAVSKRHPYLFSAGE  213 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCc---eeEEecCCCceeEEEEccc--CeEEEeecchhheeeeeeecccCceEEEecC
Confidence            4677889999999999999999998   9999999999999999998  4566899999999999999999999999999


Q ss_pred             CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCee---EEEecCCCe
Q psy12911         97 DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERC---YCADVDYPL  172 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~  172 (356)
                      |++|+.||++..+.++ +.+|-+.|.+++.+  |.-+.|++|+.|.++++||+++...+..+.+|...   +.+.+..+.
T Consensus       214 dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh--PTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpq  291 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH--PTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQ  291 (460)
T ss_pred             CCeeEEEechhhhhHHHhccccceeEEEecc--ccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCc
Confidence            9999999999999988 89999999999999  88889999999999999999999999999988753   334445679


Q ss_pred             EEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCC
Q psy12911        173 AVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSN  252 (356)
Q Consensus       173 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  252 (356)
                      +++++.|++|++||++.++....  ...|+..+.+++.+|.    ...+++++.| .++-|++..+  ..+..+.+|.. 
T Consensus       292 vit~S~D~tvrlWDl~agkt~~t--lt~hkksvral~lhP~----e~~fASas~d-nik~w~~p~g--~f~~nlsgh~~-  361 (460)
T KOG0285|consen  292 VITGSHDSTVRLWDLRAGKTMIT--LTHHKKSVRALCLHPK----ENLFASASPD-NIKQWKLPEG--EFLQNLSGHNA-  361 (460)
T ss_pred             eEEecCCceEEEeeeccCceeEe--eecccceeeEEecCCc----hhhhhccCCc-cceeccCCcc--chhhccccccc-
Confidence            99999999999999998864333  2357788999999999    6677777776 4788988766  56777888887 


Q ss_pred             CCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC--------CccceEEEEECCCCCEEEEEecc
Q psy12911        253 GGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA--------MDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       253 ~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                                .|++++...|| ++++|+++|.+.+||.++|-..+.++.        .+..|.+.+|...|..|++|..|
T Consensus       362 ----------iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ead  430 (460)
T KOG0285|consen  362 ----------IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEAD  430 (460)
T ss_pred             ----------eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCC
Confidence                      79999998775 788999999999999999866554421        24578999999999999999876


Q ss_pred             C
Q psy12911        325 D  325 (356)
Q Consensus       325 d  325 (356)
                      .
T Consensus       431 K  431 (460)
T KOG0285|consen  431 K  431 (460)
T ss_pred             c
Confidence            5

>KOG0284|consensus

Probab=100.00  E-value=3.3e-41  Score=263.74  Aligned_cols=271  Identities=19%  Similarity=0.289  Sum_probs=236.7

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  108 (356)
                      +-.|..+.|.|+|   +.|++|+..|.+.+|+...  ......++.|..+|.++.|+++|.++++|+.+|.|++|+..-.
T Consensus        96 kc~V~~v~WtPeG---RRLltgs~SGEFtLWNg~~--fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen   96 KCPVNVVRWTPEG---RRLLTGSQSGEFTLWNGTS--FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             ccceeeEEEcCCC---ceeEeecccccEEEecCce--eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence            4589999999999   9999999999999999855  4444567899999999999999999999999999999998877


Q ss_pred             ceeeecccC-CCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEEec--CCCeEEEEecCCeEEE
Q psy12911        109 QSMQVAQHD-APVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCADV--DYPLAVVGTAGRGIVL  184 (356)
Q Consensus       109 ~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~d~~i~i  184 (356)
                      ....+..|. ..|++++|+  |+...++++++||+|+|||....+....+.+|.. +-++++  ...++++++.|..|++
T Consensus       171 nVk~~~ahh~eaIRdlafS--pnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl  248 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFS--PNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL  248 (464)
T ss_pred             hhHHhhHhhhhhhheeccC--CCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence            666655554 999999999  7888999999999999999999988888888773 444444  4569999999999999


Q ss_pred             EeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccce
Q psy12911        185 YQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAV  264 (356)
Q Consensus       185 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  264 (356)
                      ||.+++......  ..|+..|..+.|+++    +++|++++.|..++++|++..  +.++++++|+.           .+
T Consensus       249 WDprSg~cl~tl--h~HKntVl~~~f~~n----~N~Llt~skD~~~kv~DiR~m--kEl~~~r~Hkk-----------dv  309 (464)
T KOG0284|consen  249 WDPRSGSCLATL--HGHKNTVLAVKFNPN----GNWLLTGSKDQSCKVFDIRTM--KELFTYRGHKK-----------DV  309 (464)
T ss_pred             ecCCCcchhhhh--hhccceEEEEEEcCC----CCeeEEccCCceEEEEehhHh--HHHHHhhcchh-----------hh
Confidence            999998654333  357889999999999    799999999999999999844  78999999998           89


Q ss_pred             EEEEEeCCC-CEEEEEcCCCeEEEEEcCcceecCCCC-CCccceEEEEECCCCCEEEEEeccC
Q psy12911        265 NGIVFHPVH-GTLATVGSEGTFSFWDKDARTKLKPSE-AMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       265 ~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +++.|+|-. .+|.+|+.||.|..|.+...+++..+. +|...|++++|+|-|.+|++|+.|.
T Consensus       310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~  372 (464)
T KOG0284|consen  310 TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDR  372 (464)
T ss_pred             eeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCc
Confidence            999999965 789999999999999998666666664 8999999999999999999988765

>KOG0318|consensus

Probab=100.00  E-value=3.8e-39  Score=259.98  Aligned_cols=289  Identities=15%  Similarity=0.243  Sum_probs=234.4

Q ss_pred             CCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec---cCCcceeEEEEccCCCeE
Q psy12911         15 TPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ---GMSEPVLDVAWIDDGTKV   91 (356)
Q Consensus        15 ~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l   91 (356)
                      ...|++-...++.|..-|+|+.|+|||   .++|+++.||++.+||-.+++  .+..+.   +|.+.|.+++|+||++.+
T Consensus       176 eGPPFKFk~s~r~HskFV~~VRysPDG---~~Fat~gsDgki~iyDGktge--~vg~l~~~~aHkGsIfalsWsPDs~~~  250 (603)
T KOG0318|consen  176 EGPPFKFKSSFREHSKFVNCVRYSPDG---SRFATAGSDGKIYIYDGKTGE--KVGELEDSDAHKGSIFALSWSPDSTQF  250 (603)
T ss_pred             eCCCeeeeecccccccceeeEEECCCC---CeEEEecCCccEEEEcCCCcc--EEEEecCCCCccccEEEEEECCCCceE
Confidence            345677777888999999999999999   999999999999999998843  234454   899999999999999999


Q ss_pred             EEEcCCCeEEEEEcCCCcee--------------------------------------------eecccCCCeeEEEEEe
Q psy12911         92 FMAGCDKTVKCWDLASNQSM--------------------------------------------QVAQHDAPVKTCHWIK  127 (356)
Q Consensus        92 ~~~~~dg~i~vwd~~~~~~~--------------------------------------------~~~~~~~~v~~~~~~~  127 (356)
                      ++++.|.+++|||+.+.+++                                            .+.+|...|+++..+ 
T Consensus       251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~-  329 (603)
T KOG0318|consen  251 LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS-  329 (603)
T ss_pred             EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc-
Confidence            99999999999998875411                                            134799999999999 


Q ss_pred             CCCCCeEEEEECCCeEEEEeCCCCCceEEE-eCC-CeeEEEecCC-CeEEEEecCCeEEEEeCCCCccccc---------
Q psy12911        128 APNYTCLMTGSWDKTLKFWDLRTPQPIMTI-NLP-ERCYCADVDY-PLAVVGTAGRGIVLYQLEGKPQEFK---------  195 (356)
Q Consensus       128 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~-~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~---------  195 (356)
                       +++.+|++|+.||.|.-||..++..-+.. +.| ..+..+.... ..+++.+.|.++++.++..+.....         
T Consensus       330 -~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP  408 (603)
T KOG0318|consen  330 -PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP  408 (603)
T ss_pred             -CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCc
Confidence             99999999999999999999888654443 222 3456666665 6788888888888887643210000         


Q ss_pred             ----------------------------cccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911        196 ----------------------------KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK  247 (356)
Q Consensus       196 ----------------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  247 (356)
                                                  ....+......+++++|+    +..+++|+.|+.+++|.+..........+.
T Consensus       409 ~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~----~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~  484 (603)
T KOG0318|consen  409 KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD----GSEVAVGGQDGKVHVYSLSGDELKEEAKLL  484 (603)
T ss_pred             eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC----CCEEEEecccceEEEEEecCCcccceeeee
Confidence                                        000123456788999999    889999999999999999887666666777


Q ss_pred             eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC-CCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        248 CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK-PSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      .|+.           +|++++||||+.|||++...+.+.+||+.+.+... ...-|+..|.+++|+|+..++|+||-|-
T Consensus       485 ~h~a-----------~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt  552 (603)
T KOG0318|consen  485 EHRA-----------AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDT  552 (603)
T ss_pred             cccC-----------CceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccc
Confidence            8887           99999999999999999999999999999887632 3345999999999999999999999654

>KOG0273|consensus

Probab=100.00  E-value=2.1e-39  Score=258.06  Aligned_cols=272  Identities=16%  Similarity=0.237  Sum_probs=236.4

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  108 (356)
                      ...|++++|+.+|   .+||+|+.||.++||+...   .+..++..|+++|.++.|+..|++|++++.|+++.+||..++
T Consensus       235 nkdVT~L~Wn~~G---~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g  308 (524)
T KOG0273|consen  235 NKDVTSLDWNNDG---TLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG  308 (524)
T ss_pred             cCCcceEEecCCC---CeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence            4689999999999   9999999999999999876   455788899999999999999999999999999999999999


Q ss_pred             ceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEEecC--CCeEEEEecCCeEEE
Q psy12911        109 QSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCADVD--YPLAVVGTAGRGIVL  184 (356)
Q Consensus       109 ~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~d~~i~i  184 (356)
                      +..+ +.-|..+...+.|-   +...+++++.|+.|+++.+....++.++.+|.. +.++.++  +.+|++++.|++++|
T Consensus       309 ~~~q~f~~~s~~~lDVdW~---~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlki  385 (524)
T KOG0273|consen  309 TVKQQFEFHSAPALDVDWQ---SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKI  385 (524)
T ss_pred             eEEEeeeeccCCccceEEe---cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEe
Confidence            8877 66677777889995   456799999999999999999999999998763 4455554  789999999999999


Q ss_pred             EeCCCCccccccccCcccccceEEEeecCCC-----CCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcc
Q psy12911        185 YQLEGKPQEFKKTESPLKYQNRCIAIFRDKK-----KQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQ  259 (356)
Q Consensus       185 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (356)
                      |........  .-...|...|..+.|+|.+.     ..+..+++++.|+.|++||....  .++++|..|..        
T Consensus       386 Ws~~~~~~~--~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--v~i~~f~kH~~--------  453 (524)
T KOG0273|consen  386 WSMGQSNSV--HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--VPIHTLMKHQE--------  453 (524)
T ss_pred             eecCCCcch--hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--ceeEeeccCCC--------
Confidence            997664321  12235677899999999843     34678999999999999999877  78999999998        


Q ss_pred             cccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        260 DIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       260 ~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                         +|.+++|+|+|+++|+|+.||.|.+|++++++.++.+.+ .+.|..++|+.+|.+|..+-+|+
T Consensus       454 ---pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  454 ---PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDG  515 (524)
T ss_pred             ---ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCC
Confidence               999999999999999999999999999999999998875 55699999999999998887654

>KOG0279|consensus

Probab=100.00  E-value=4e-39  Score=240.28  Aligned_cols=255  Identities=16%  Similarity=0.219  Sum_probs=211.2

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      .+.+.++||+..|..+..+++|   ++.++++.|+++++||+.++  +..+.+.+|...|.+++|++|.+.+++|+.|.+
T Consensus        54 ~~~r~~~GHsH~v~dv~~s~dg---~~alS~swD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkT  128 (315)
T KOG0279|consen   54 VPVRRLTGHSHFVSDVVLSSDG---NFALSASWDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKT  128 (315)
T ss_pred             ceeeeeeccceEecceEEccCC---ceEEeccccceEEEEEecCC--cEEEEEEecCCceEEEEecCCCceeecCCCcce
Confidence            4578899999999999999999   99999999999999999984  455789999999999999999999999999999


Q ss_pred             EEEEEcCCCceeeeccc--CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEecCCCeEE
Q psy12911        100 VKCWDLASNQSMQVAQH--DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCADVDYPLAV  174 (356)
Q Consensus       100 i~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~  174 (356)
                      |++|++..........+  .+-|.|+.|+|.++..+|++++.|++|++||+++.+....+.++.   ..+.+++++...+
T Consensus       129 iklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslca  208 (315)
T KOG0279|consen  129 IKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCA  208 (315)
T ss_pred             eeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEe
Confidence            99999988776664443  788999999976668999999999999999999999999888877   4677889999999


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                      +|+.||.+.+||++.++..   ....+...|.+++|+|+     .+.+++..+..|+|||++..  ..+.++........
T Consensus       209 sGgkdg~~~LwdL~~~k~l---ysl~a~~~v~sl~fspn-----rywL~~at~~sIkIwdl~~~--~~v~~l~~d~~g~s  278 (315)
T KOG0279|consen  209 SGGKDGEAMLWDLNEGKNL---YSLEAFDIVNSLCFSPN-----RYWLCAATATSIKIWDLESK--AVVEELKLDGIGPS  278 (315)
T ss_pred             cCCCCceEEEEEccCCcee---EeccCCCeEeeEEecCC-----ceeEeeccCCceEEEeccch--hhhhhccccccccc
Confidence            9999999999999988652   23356788999999998     45555566666999999876  44444433221110


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      ..  ...-...+++|++||..|++|..|+.|++|.+.
T Consensus       279 ~~--~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  279 SK--AGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cc--cCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            00  000146688999999999999999999999875

>KOG0263|consensus

Probab=100.00  E-value=1e-39  Score=275.35  Aligned_cols=242  Identities=20%  Similarity=0.362  Sum_probs=216.1

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-----------------------------ceeeee
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-----------------------------KTIPKS   71 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-----------------------------~~~~~~   71 (356)
                      .+-++..-...++|..|++++   .+||.|-.|..|++|.+....                             ....+.
T Consensus       370 c~YT~~nt~~~v~ca~fSdds---smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~  446 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDS---SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT  446 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCc---chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence            334444455689999999999   999999999999999987310                             122245


Q ss_pred             eccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC
Q psy12911         72 MQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT  150 (356)
Q Consensus        72 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  150 (356)
                      +.+|.++|..+.|+|+.++|++++.|++|++|.+.+..++. ..+|..+|+.+.|+  |.|-+++|++.|++-++|....
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~--P~GyYFatas~D~tArLWs~d~  524 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA--PRGYYFATASHDQTARLWSTDH  524 (707)
T ss_pred             eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec--CCceEEEecCCCceeeeeeccc
Confidence            78999999999999999999999999999999999988776 78999999999999  9999999999999999999877


Q ss_pred             CCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeE
Q psy12911        151 PQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRV  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i  230 (356)
                      .++++.+.+                                         |-..+.|+.|+|+    ..++++|+.|.++
T Consensus       525 ~~PlRifag-----------------------------------------hlsDV~cv~FHPN----s~Y~aTGSsD~tV  559 (707)
T KOG0263|consen  525 NKPLRIFAG-----------------------------------------HLSDVDCVSFHPN----SNYVATGSSDRTV  559 (707)
T ss_pred             CCchhhhcc-----------------------------------------cccccceEEECCc----ccccccCCCCceE
Confidence            666665543                                         5577899999999    8999999999999


Q ss_pred             EEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEE
Q psy12911        231 AIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCA  310 (356)
Q Consensus       231 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  310 (356)
                      ++||...+  ..++.|.+|..           +|.+++|||+|++|++|+.||.|.+||+.+++++..+.+|++.|.++.
T Consensus       560 RlWDv~~G--~~VRiF~GH~~-----------~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls  626 (707)
T KOG0263|consen  560 RLWDVSTG--NSVRIFTGHKG-----------PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS  626 (707)
T ss_pred             EEEEcCCC--cEEEEecCCCC-----------ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEE
Confidence            99999877  66888899998           999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCEEEEEeccC
Q psy12911        311 LNHNGQIFAYAVSYD  325 (356)
Q Consensus       311 ~s~~~~~l~~~s~~d  325 (356)
                      ||.||..||+|+.|-
T Consensus       627 FS~dg~vLasgg~Dn  641 (707)
T KOG0263|consen  627 FSRDGNVLASGGADN  641 (707)
T ss_pred             EecCCCEEEecCCCC
Confidence            999999999999865

>KOG0291|consensus

Probab=100.00  E-value=6.4e-38  Score=263.07  Aligned_cols=300  Identities=18%  Similarity=0.257  Sum_probs=248.7

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCC-CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWD-NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      ..+..++.+.-...+|..++|+..|   +.||.|+.. |.+-||+...  +..+...++|...+++++++|||+++++|+
T Consensus       295 P~f~lih~LSis~~~I~t~~~N~tG---DWiA~g~~klgQLlVweWqs--EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~  369 (893)
T KOG0291|consen  295 PDFNLIHSLSISDQKILTVSFNSTG---DWIAFGCSKLGQLLVWEWQS--ESYVLKQQGHSDRITSLAYSPDGQLIATGA  369 (893)
T ss_pred             CCceEEEEeecccceeeEEEecccC---CEEEEcCCccceEEEEEeec--cceeeeccccccceeeEEECCCCcEEEecc
Confidence            3455666777777899999999999   999998754 8999999988  455567889999999999999999999999


Q ss_pred             CCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe----eEEEecCC
Q psy12911         96 CDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER----CYCADVDY  170 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~  170 (356)
                      .||.|+|||..++-+.. +..|+..|+.+.|+  ..++.+++++-||+|+.||+...+..+++..+.+    +++.++.+
T Consensus       370 eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~--~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG  447 (893)
T KOG0291|consen  370 EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT--ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG  447 (893)
T ss_pred             CCCcEEEEeccCceEEEEeccCCCceEEEEEE--ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC
Confidence            99999999999998876 88999999999999  9999999999999999999999999999998874    56667778


Q ss_pred             CeEEEEecCC-eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee
Q psy12911        171 PLAVVGTAGR-GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH  249 (356)
Q Consensus       171 ~~~~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  249 (356)
                      ..+++|+.|. .|.+|++.+++.  ..+...|.++|.+++|+|.    +..|++++.|.+|++|++-... ....++...
T Consensus       448 elV~AG~~d~F~IfvWS~qTGql--lDiLsGHEgPVs~l~f~~~----~~~LaS~SWDkTVRiW~if~s~-~~vEtl~i~  520 (893)
T KOG0291|consen  448 ELVCAGAQDSFEIFVWSVQTGQL--LDILSGHEGPVSGLSFSPD----GSLLASGSWDKTVRIWDIFSSS-GTVETLEIR  520 (893)
T ss_pred             CEEEeeccceEEEEEEEeecCee--eehhcCCCCcceeeEEccc----cCeEEeccccceEEEEEeeccC-ceeeeEeec
Confidence            8888888875 699999999853  3344579999999999999    8899999999999999985432 234444443


Q ss_pred             cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC--------------------CccceEEE
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA--------------------MDMSISTC  309 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~v~~~  309 (356)
                      .            .+..++|+|+|+.||++..||.|.+||.+.+..+..+.+                    ....++.+
T Consensus       521 s------------dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti  588 (893)
T KOG0291|consen  521 S------------DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTI  588 (893)
T ss_pred             c------------ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEE
Confidence            3            599999999999999999999999999987655433221                    13468999


Q ss_pred             EECCCCCEEEEEeccCCcCCCccCCCCCCceeeecccc
Q psy12911        310 ALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCF  347 (356)
Q Consensus       310 ~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~~~~~~~  347 (356)
                      ++|+||..|++|+.   ++.+.+|+..  +.+.+++++
T Consensus       589 ~ySaDG~~IlAgG~---sn~iCiY~v~--~~vllkkfq  621 (893)
T KOG0291|consen  589 CYSADGKCILAGGE---SNSICIYDVP--EGVLLKKFQ  621 (893)
T ss_pred             EEcCCCCEEEecCC---cccEEEEECc--hhheeeeEE
Confidence            99999999999985   4455556554  444444443

>KOG0296|consensus

Probab=100.00  E-value=4.7e-38  Score=242.83  Aligned_cols=284  Identities=15%  Similarity=0.216  Sum_probs=234.7

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      .....+..|++.|.+++.+|+.   ++++||+.|....||++.++.  ....+.+|+..|+++.|+.+|.+||+|+.+|.
T Consensus        55 dS~~tF~~H~~svFavsl~P~~---~l~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~FshdgtlLATGdmsG~  129 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNN---NLVATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHDGTLLATGDMSGK  129 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCC---ceEEecCCCceEEEEEccCCc--ceeEecCCCCceEEEEEccCceEEEecCCCcc
Confidence            3456788999999999999988   999999999999999999843  56789999999999999999999999999999


Q ss_pred             EEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEE
Q psy12911        100 VKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVV  175 (356)
Q Consensus       100 i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  175 (356)
                      |+||+..++.... +...-..+.-+.|+  |.+..|+.|+.||.+.+|.+.++...+.+.++..   +-.+.+++..+++
T Consensus       130 v~v~~~stg~~~~~~~~e~~dieWl~WH--p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  130 VLVFKVSTGGEQWKLDQEVEDIEWLKWH--PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             EEEEEcccCceEEEeecccCceEEEEec--ccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence            9999999988776 44567788889999  8999999999999999999999888888888763   3456778899999


Q ss_pred             EecCCeEEEEeCCCCccccccccCc-------------------------------------------------ccccce
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESP-------------------------------------------------LKYQNR  206 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~-------------------------------------------------~~~~i~  206 (356)
                      +..||+|++|++.++....+.....                                                 +...+.
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e  287 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE  287 (399)
T ss_pred             EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence            9999999999998875433322100                                                 111222


Q ss_pred             EEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEE
Q psy12911        207 CIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFS  286 (356)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~  286 (356)
                      |+.+.|.... -.+.++|+.||+|.|||+...+   ++..-.|..           +|..+.|-+ ..+|++++.||.|+
T Consensus       288 sve~~~~ss~-lpL~A~G~vdG~i~iyD~a~~~---~R~~c~he~-----------~V~~l~w~~-t~~l~t~c~~g~v~  351 (399)
T KOG0296|consen  288 SVESIPSSSK-LPLAACGSVDGTIAIYDLAAST---LRHICEHED-----------GVTKLKWLN-TDYLLTACANGKVR  351 (399)
T ss_pred             hhhhcccccc-cchhhcccccceEEEEecccch---hheeccCCC-----------ceEEEEEcC-cchheeeccCceEE
Confidence            2333222111 4568899999999999997653   333334554           799999988 68999999999999


Q ss_pred             EEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCC
Q psy12911        287 FWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDW  326 (356)
Q Consensus       287 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~  326 (356)
                      .||.++|+++.++.+|...|.+++++|++++++++|.|.-
T Consensus       352 ~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~  391 (399)
T KOG0296|consen  352 QWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT  391 (399)
T ss_pred             eeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence            9999999999999999999999999999999999987653

>KOG0286|consensus

Probab=100.00  E-value=6.6e-38  Score=235.27  Aligned_cols=252  Identities=17%  Similarity=0.230  Sum_probs=224.3

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC----CceeeeeeccCCcceeEEEEccCCCeE
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN----GKTIPKSMQGMSEPVLDVAWIDDGTKV   91 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l   91 (356)
                      ..+-...+.+.-....|..++|+|.|   +++|+|+.|+...||++.+.    .....+.+.+|.+-+.++.|-+|+ .|
T Consensus        84 s~TtnK~haipl~s~WVMtCA~sPSg---~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~i  159 (343)
T KOG0286|consen   84 SFTTNKVHAIPLPSSWVMTCAYSPSG---NFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HI  159 (343)
T ss_pred             cccccceeEEecCceeEEEEEECCCC---CeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ce
Confidence            33445556666778899999999999   99999999999999999853    125557799999999999999855 79


Q ss_pred             EEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEe
Q psy12911         92 FMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCAD  167 (356)
Q Consensus        92 ~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~  167 (356)
                      ++++.|.+..+||+++++.+. +.+|.+.|.++.++| .+++.+++|+.|+..++||++.+.+.++|.+|.   +.+++.
T Consensus       160 lT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p-~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff  238 (343)
T KOG0286|consen  160 LTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP-SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF  238 (343)
T ss_pred             EecCCCceEEEEEcccceEEEEecCCcccEEEEecCC-CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEc
Confidence            999999999999999999887 889999999999993 299999999999999999999999999999887   467788


Q ss_pred             cCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911        168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK  247 (356)
Q Consensus       168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  247 (356)
                      +++.-+++|+.|++.++||++...+............+++++|+..    +++|++|..|.++.+||.-..  +....+.
T Consensus       239 P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S----GRlLfagy~d~~c~vWDtlk~--e~vg~L~  312 (343)
T KOG0286|consen  239 PSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS----GRLLFAGYDDFTCNVWDTLKG--ERVGVLA  312 (343)
T ss_pred             cCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc----ccEEEeeecCCceeEeecccc--ceEEEee
Confidence            8889999999999999999999877666666667789999999999    899999999999999998655  6788899


Q ss_pred             eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911        248 CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD  289 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd  289 (356)
                      +|..           .|.++..+|||.-+++|+.|.+++||.
T Consensus       313 GHeN-----------RvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  313 GHEN-----------RVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccCC-----------eeEEEEECCCCcEEEecchhHheeecC
Confidence            9998           999999999999999999999999994

>KOG0293|consensus

Probab=100.00  E-value=1.1e-38  Score=250.21  Aligned_cols=289  Identities=17%  Similarity=0.242  Sum_probs=240.0

Q ss_pred             CCCCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-ceeeeeeccCCcceeEEEEccCCCeE
Q psy12911         13 TSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-KTIPKSMQGMSEPVLDVAWIDDGTKV   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l   91 (356)
                      .....|.+..+++..|.+.|.-+.||++|   ++||+++.|.+..+|++.... ..+.+++.+|..+|..+.||||.++|
T Consensus       208 ~~~qip~qt~qil~~htdEVWfl~FS~nG---kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryL  284 (519)
T KOG0293|consen  208 GRLQIPSQTWQILQDHTDEVWFLQFSHNG---KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYL  284 (519)
T ss_pred             CcccCCchhhhhHhhCCCcEEEEEEcCCC---eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeE
Confidence            34556788889999999999999999999   999999999999999986643 35668899999999999999999999


Q ss_pred             EEEcCCCeEEEEEcCCCceeeeccc--CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----eeEE
Q psy12911         92 FMAGCDKTVKCWDLASNQSMQVAQH--DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----RCYC  165 (356)
Q Consensus        92 ~~~~~dg~i~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~  165 (356)
                      ++|+.|..+.+||+.+|.......+  ...+.+++|.  |||..+++|+.|+++..||+.. ..+...++-.    ..++
T Consensus       285 laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~--pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dla  361 (519)
T KOG0293|consen  285 LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWC--PDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLA  361 (519)
T ss_pred             EecCchHheeeccCCcchhhhhcccCcCCCcceeEEc--cCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEE
Confidence            9999999999999999999885554  4789999999  9999999999999999999854 3333333322    3566


Q ss_pred             EecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911        166 ADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT  245 (356)
Q Consensus       166 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  245 (356)
                      +..++..+++.+.|..|++|+.+......   ......++++++++.+    +.++++.-.+..+++||+...  +.+..
T Consensus       362 it~Dgk~vl~v~~d~~i~l~~~e~~~dr~---lise~~~its~~iS~d----~k~~LvnL~~qei~LWDl~e~--~lv~k  432 (519)
T KOG0293|consen  362 ITYDGKYVLLVTVDKKIRLYNREARVDRG---LISEEQPITSFSISKD----GKLALVNLQDQEIHLWDLEEN--KLVRK  432 (519)
T ss_pred             EcCCCcEEEEEecccceeeechhhhhhhc---cccccCceeEEEEcCC----CcEEEEEcccCeeEEeecchh--hHHHH
Confidence            77888999999999999999988753221   2234578999999999    789999999999999999844  77888


Q ss_pred             eeeecCCCCCCCcccccceEEEEEeC-CCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCE-EEEEec
Q psy12911        246 FKCHRSNGGAGGVQDIYAVNGIVFHP-VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI-FAYAVS  323 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~s~  323 (356)
                      +.+|....         -+-.-+|-- +..++|+|++|+.|+||+..+|+++.++.+|...|++|+|+|.... +|+||.
T Consensus       433 Y~Ghkq~~---------fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD  503 (519)
T KOG0293|consen  433 YFGHKQGH---------FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD  503 (519)
T ss_pred             hhcccccc---------eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC
Confidence            88887622         344444543 3489999999999999999999999999999999999999997755 555554


Q ss_pred             cC
Q psy12911        324 YD  325 (356)
Q Consensus       324 ~d  325 (356)
                      |+
T Consensus       504 Dg  505 (519)
T KOG0293|consen  504 DG  505 (519)
T ss_pred             CC
Confidence            43

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.3e-37  Score=252.17  Aligned_cols=277  Identities=23%  Similarity=0.357  Sum_probs=233.6

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      ..+++|.++|++++|+|++   ++|++++.||.|++|++.+.  .....+..|...+..+.|+|++++|++++.||.|++
T Consensus         3 ~~~~~h~~~i~~~~~~~~~---~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i   77 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDG---KLLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL   77 (289)
T ss_pred             hHhcccCCCEEEEEEcCCC---CEEEEeecCcEEEEEEeeCC--CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence            4567899999999999998   99999999999999999873  344677789999999999999999999999999999


Q ss_pred             EEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEE--EecCCCeEEEEec
Q psy12911        103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYC--ADVDYPLAVVGTA  178 (356)
Q Consensus       103 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~  178 (356)
                      |++.+++... +..|...+.++.|+  +++.++++++.|+.|++||+++++....+..+. .+.+  +.+.+.++++++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  155 (289)
T cd00200          78 WDLETGECVRTLTGHTSYVSSVAFS--PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ  155 (289)
T ss_pred             EEcCcccceEEEeccCCcEEEEEEc--CCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC
Confidence            9999866554 67788899999999  778888888889999999999888888887544 3444  4444467777777


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCc
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGV  258 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (356)
                      ++.|++||++........  ..+...+.++.++|+    +..+++++.++.+++||++..  +.+..+..|..       
T Consensus       156 ~~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~----~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~~-------  220 (289)
T cd00200         156 DGTIKLWDLRTGKCVATL--TGHTGEVNSVAFSPD----GEKLLSSSSDGTIKLWDLSTG--KCLGTLRGHEN-------  220 (289)
T ss_pred             CCcEEEEEccccccceeE--ecCccccceEEECCC----cCEEEEecCCCcEEEEECCCC--ceecchhhcCC-------
Confidence            999999999865432222  245668999999999    778999999999999999765  45556656665       


Q ss_pred             ccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        259 QDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       259 ~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                          .+.+++|+|++.++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.++
T Consensus       221 ----~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  283 (289)
T cd00200         221 ----GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG  283 (289)
T ss_pred             ----ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCC
Confidence                799999999999999998899999999999998888889999999999999999999998654

>KOG0266|consensus

Probab=100.00  E-value=4.1e-37  Score=265.14  Aligned_cols=282  Identities=20%  Similarity=0.279  Sum_probs=239.6

Q ss_pred             eEEeCCC-CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         22 FEVVSPP-EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        22 ~~~~~~h-~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      ...+.+| ...|.|+.|+++|   +.|++++.|+.+++|+...........+.+|...|.+++|+|+++++++++.|++|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g---~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti  227 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDG---RALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTL  227 (456)
T ss_pred             eeeecccccCceEEEEEcCCC---CeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceE
Confidence            4445444 8899999999999   99999999999999999663212556678999999999999999999999999999


Q ss_pred             EEEEc-CCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEE
Q psy12911        101 KCWDL-ASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVV  175 (356)
Q Consensus       101 ~vwd~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  175 (356)
                      ++||+ ..+..++ +.+|...|++++|+  |+++++++|+.|++|+|||+++++++..+..|..   .+++..++..+++
T Consensus       228 riwd~~~~~~~~~~l~gH~~~v~~~~f~--p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s  305 (456)
T KOG0266|consen  228 RIWDLKDDGRNLKTLKGHSTYVTSVAFS--PDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS  305 (456)
T ss_pred             EEeeccCCCeEEEEecCCCCceEEEEec--CCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE
Confidence            99999 4445555 78999999999999  9999999999999999999999999999998874   4456677789999


Q ss_pred             EecCCeEEEEeCCCCccc-cccccCcccc-cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQE-FKKTESPLKY-QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG  253 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~-~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  253 (356)
                      ++.|+.|++||+.++... .......... .++++.|+|+    +.++++++.|+.+++|++...  .....+.+|....
T Consensus       306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~----~~~ll~~~~d~~~~~w~l~~~--~~~~~~~~~~~~~  379 (456)
T KOG0266|consen  306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPN----GKYLLSASLDRTLKLWDLRSG--KSVGTYTGHSNLV  379 (456)
T ss_pred             cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCC----CcEEEEecCCCeEEEEEccCC--cceeeecccCCcc
Confidence            999999999999998632 1222212222 6899999999    899999999999999999866  5667777776520


Q ss_pred             CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC-ccceEEEEECCCCCEEEEEe
Q psy12911        254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM-DMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~s  322 (356)
                              ..+.+...++.+.++++|+.|+.|++||+.++..+..+.+| ...+..++++|...++++++
T Consensus       380 --------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  380 --------RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             --------eeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence                    14555666889999999999999999999999999999999 88999999999999999997

>KOG0645|consensus

Probab=100.00  E-value=1.9e-36  Score=225.07  Aligned_cols=278  Identities=19%  Similarity=0.228  Sum_probs=222.3

Q ss_pred             CceEEeCCCCCCeeEEEecCC-CCCceEEEEEeCCCeEEEEeccCCC-ceeeeee-ccCCcceeEEEEccCCCeEEEEcC
Q psy12911         20 KDFEVVSPPEDSISCMAFSPS-TLPQYFLIAGSWDNNVRCWEVEPNG-KTIPKSM-QGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~-~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      -.++.+++|.+.|..++|+|- |   ..||+|+.|+.|++|+...+. ......+ .+|+..|.+++|+|.|++|++++.
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g---~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF   81 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKG---VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF   81 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCc---eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence            456788999999999999998 7   899999999999999998422 2222222 479999999999999999999999


Q ss_pred             CCeEEEEEcCCCce--ee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC---CceEEEeCCCe---eEEEe
Q psy12911         97 DKTVKCWDLASNQS--MQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP---QPIMTINLPER---CYCAD  167 (356)
Q Consensus        97 dg~i~vwd~~~~~~--~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~---~~~~~  167 (356)
                      |.++.||.-..++.  +. +.+|...|.+++|+  ++|++||+|+.|..|-||.+..+   +++..++.|.+   .+.+.
T Consensus        82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws--~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH  159 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWS--ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH  159 (312)
T ss_pred             cceEEEeecCCCceeEEeeeeccccceeEEEEc--CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence            99999998776654  33 78999999999999  99999999999999999998755   45666776653   55666


Q ss_pred             cCCCeEEEEecCCeEEEEeCC-CCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee
Q psy12911        168 VDYPLAVVGTAGRGIVLYQLE-GKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       168 ~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~  246 (356)
                      +...+|++++.|++|++|+-. ...-........+...+.+++|.+.    +..+++++.|++++||-....-      -
T Consensus       160 Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~----G~rl~s~sdD~tv~Iw~~~~~~------~  229 (312)
T KOG0645|consen  160 PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI----GSRLVSCSDDGTVSIWRLYTDL------S  229 (312)
T ss_pred             CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC----CceEEEecCCcceEeeeeccCc------c
Confidence            667899999999999999987 3333333444466779999999999    8899999999999999754210      0


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc------eecC-CCCCCccceEEEEECCC-CCEE
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR------TKLK-PSEAMDMSISTCALNHN-GQIF  318 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~------~~~~-~~~~~~~~v~~~~~s~~-~~~l  318 (356)
                      ..|..           +++.+.|.  ...||+++.|+.|++|.....      +.+. .-..|+..|+++.|.|. ..+|
T Consensus       230 ~~~sr-----------~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L  296 (312)
T KOG0645|consen  230 GMHSR-----------ALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRL  296 (312)
T ss_pred             hhccc-----------ceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCce
Confidence            12333           78999997  568999999999999986642      1222 34578999999999995 6777


Q ss_pred             EEEeccC
Q psy12911        319 AYAVSYD  325 (356)
Q Consensus       319 ~~~s~~d  325 (356)
                      ++++.|+
T Consensus       297 ~s~~DDG  303 (312)
T KOG0645|consen  297 ASGGDDG  303 (312)
T ss_pred             eecCCCc
Confidence            7777655

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.6e-36  Score=280.28  Aligned_cols=280  Identities=15%  Similarity=0.209  Sum_probs=226.3

Q ss_pred             CCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC---Cc---eeeeeeccCCcceeEEEEcc-CCCeEEEEcCCC
Q psy12911         26 SPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN---GK---TIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDK   98 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~---~~---~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg   98 (356)
                      ..|.+.|++++|+|++   ++||+|+.|+.|+||+....   +.   .....+. +...|.+++|++ ++.+|++++.||
T Consensus       480 ~~~~~~V~~i~fs~dg---~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg  555 (793)
T PLN00181        480 LNSSNLVCAIGFDRDG---EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEG  555 (793)
T ss_pred             cCCCCcEEEEEECCCC---CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCC
Confidence            4589999999999999   99999999999999997541   11   1112233 456899999987 578999999999


Q ss_pred             eEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEec---CCCeEE
Q psy12911         99 TVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADV---DYPLAV  174 (356)
Q Consensus        99 ~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~  174 (356)
                      +|++||+.+++.+. +.+|...|++++|+| +++.+|++|+.|+.|++||+++++.+..+..+..+.++.+   .+..++
T Consensus       556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~la  634 (793)
T PLN00181        556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLA  634 (793)
T ss_pred             eEEEEECCCCeEEEEecCCCCCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEE
Confidence            99999999887766 778999999999993 3788999999999999999999999888887766666654   467899


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC----CCCCcceeeeec
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA----NPKDNFTFKCHR  250 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~----~~~~~~~~~~~~  250 (356)
                      +|+.|+.|++||++........ ...|...|.++.|. +    +..+++++.|+.|++||+...    ....+..+.+|.
T Consensus       635 tgs~dg~I~iwD~~~~~~~~~~-~~~h~~~V~~v~f~-~----~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~  708 (793)
T PLN00181        635 FGSADHKVYYYDLRNPKLPLCT-MIGHSKTVSYVRFV-D----SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT  708 (793)
T ss_pred             EEeCCCeEEEEECCCCCccceE-ecCCCCCEEEEEEe-C----CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC
Confidence            9999999999999876432222 23577889999996 4    568999999999999999743    124566777887


Q ss_pred             CCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC-------------CCCCCccceEEEEECCCCCE
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK-------------PSEAMDMSISTCALNHNGQI  317 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~-------------~~~~~~~~v~~~~~s~~~~~  317 (356)
                      .           .+..++|+|++.+|++|+.|+.|++|+......+.             ....|...|.+++|+|++..
T Consensus       709 ~-----------~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~  777 (793)
T PLN00181        709 N-----------VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST  777 (793)
T ss_pred             C-----------CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence            6           79999999999999999999999999976543221             12335567999999999999


Q ss_pred             EEEEeccCCc
Q psy12911        318 FAYAVSYDWS  327 (356)
Q Consensus       318 l~~~s~~d~~  327 (356)
                      |++|+.++..
T Consensus       778 lva~~~dG~I  787 (793)
T PLN00181        778 LVAANSTGNI  787 (793)
T ss_pred             EEEecCCCcE
Confidence            9999976643

>KOG0263|consensus

Probab=100.00  E-value=6e-38  Score=264.71  Aligned_cols=211  Identities=22%  Similarity=0.337  Sum_probs=193.8

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      ......+.+-||.++|..+.|+|+.   ++|++++.|+++|+|.+.+  ......+++|..||..+.|+|.|-++|+++.
T Consensus       439 ~~~~~~~~L~GH~GPVyg~sFsPd~---rfLlScSED~svRLWsl~t--~s~~V~y~GH~~PVwdV~F~P~GyYFatas~  513 (707)
T KOG0263|consen  439 DSSGTSRTLYGHSGPVYGCSFSPDR---RFLLSCSEDSSVRLWSLDT--WSCLVIYKGHLAPVWDVQFAPRGYYFATASH  513 (707)
T ss_pred             cCCceeEEeecCCCceeeeeecccc---cceeeccCCcceeeeeccc--ceeEEEecCCCcceeeEEecCCceEEEecCC
Confidence            3344556689999999999999999   9999999999999999998  5555678899999999999999999999999


Q ss_pred             CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEE
Q psy12911         97 DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVV  175 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (356)
                      |++.++|........+ +.+|-+.|.|+.|+  |+..++++|+.|.+||+||+.+|..++.|.+                
T Consensus       514 D~tArLWs~d~~~PlRifaghlsDV~cv~FH--PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G----------------  575 (707)
T KOG0263|consen  514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFH--PNSNYVATGSSDRTVRLWDVSTGNSVRIFTG----------------  575 (707)
T ss_pred             CceeeeeecccCCchhhhcccccccceEEEC--CcccccccCCCCceEEEEEcCCCcEEEEecC----------------
Confidence            9999999999888887 78999999999999  9999999999999999999999988777653                


Q ss_pred             EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                                               |..+|.+++++|+    +.+|++|+.||.|.+||+..+  ..+..+.+|.+    
T Consensus       576 -------------------------H~~~V~al~~Sp~----Gr~LaSg~ed~~I~iWDl~~~--~~v~~l~~Ht~----  620 (707)
T KOG0263|consen  576 -------------------------HKGPVTALAFSPC----GRYLASGDEDGLIKIWDLANG--SLVKQLKGHTG----  620 (707)
T ss_pred             -------------------------CCCceEEEEEcCC----CceEeecccCCcEEEEEcCCC--cchhhhhcccC----
Confidence                                     6788999999999    899999999999999999877  77889999977    


Q ss_pred             CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                             .|.++.||.+|..||+|+.|.+|++||+..
T Consensus       621 -------ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  621 -------TIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             -------ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence                   899999999999999999999999999864

>KOG0291|consensus

Probab=100.00  E-value=1.7e-36  Score=254.60  Aligned_cols=287  Identities=16%  Similarity=0.236  Sum_probs=246.1

Q ss_pred             CCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE
Q psy12911         15 TPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA   94 (356)
Q Consensus        15 ~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~   94 (356)
                      ..+|+...++..+|-+.|.++.|+.|.   ++|++|+.|-+++||.++.........+.+|...|.++-|..+...+++.
T Consensus       131 ~~~pFvl~r~~~g~fddi~si~Ws~DS---r~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tv  207 (893)
T KOG0291|consen  131 EFNPFVLHRTYLGHFDDITSIDWSDDS---RLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTV  207 (893)
T ss_pred             ccCcceEeeeecCCccceeEEEeccCC---ceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEE
Confidence            467888899999999999999999999   99999999999999999886665667889999999999999999999999


Q ss_pred             cCCCeEEEEEcCC-----------------------Cc------------------------------------------
Q psy12911         95 GCDKTVKCWDLAS-----------------------NQ------------------------------------------  109 (356)
Q Consensus        95 ~~dg~i~vwd~~~-----------------------~~------------------------------------------  109 (356)
                      +.||.+.+|....                       ++                                          
T Consensus       208 skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG  287 (893)
T KOG0291|consen  208 SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSG  287 (893)
T ss_pred             ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCC
Confidence            9999999997650                       00                                          


Q ss_pred             -------------------------------------------------------eeeecccCCCeeEEEEEeCCCCCeE
Q psy12911        110 -------------------------------------------------------SMQVAQHDAPVKTCHWIKAPNYTCL  134 (356)
Q Consensus       110 -------------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~l  134 (356)
                                                                             .++..+|...+++++++  |||+++
T Consensus       288 ~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YS--pDgq~i  365 (893)
T KOG0291|consen  288 EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYS--PDGQLI  365 (893)
T ss_pred             eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEEC--CCCcEE
Confidence                                                                   11234688899999999  999999


Q ss_pred             EEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEee
Q psy12911        135 MTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIF  211 (356)
Q Consensus       135 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  211 (356)
                      ++|++||.|+|||..++-|+.++..|..   .+++...++.+++++-||+++.||+.... .++....+.+.+..|++..
T Consensus       366 aTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr-NfRTft~P~p~QfscvavD  444 (893)
T KOG0291|consen  366 ATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR-NFRTFTSPEPIQFSCVAVD  444 (893)
T ss_pred             EeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc-eeeeecCCCceeeeEEEEc
Confidence            9999999999999999999999998874   66778888999999999999999998764 3455555667788999999


Q ss_pred             cCCCCCCCeEEEeecCC-eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        212 RDKKKQPAGYGLGSVEG-RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       212 ~~~~~~~~~~~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                      |.    +..+.+|+.|. .|.+|++..+  +.+-.+.+|.+           +|.+++|+|++..||+++.|.+||+||+
T Consensus       445 ~s----GelV~AG~~d~F~IfvWS~qTG--qllDiLsGHEg-----------PVs~l~f~~~~~~LaS~SWDkTVRiW~i  507 (893)
T KOG0291|consen  445 PS----GELVCAGAQDSFEIFVWSVQTG--QLLDILSGHEG-----------PVSGLSFSPDGSLLASGSWDKTVRIWDI  507 (893)
T ss_pred             CC----CCEEEeeccceEEEEEEEeecC--eeeehhcCCCC-----------cceeeEEccccCeEEeccccceEEEEEe
Confidence            98    77888888776 4888888776  78899999999           9999999999999999999999999998


Q ss_pred             Ccce-ecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        291 DART-KLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       291 ~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      -... .+.+++ +...+..++|+|||+.||++.-|+
T Consensus       508 f~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  508 FSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             eccCceeeeEe-eccceeEEEEcCCCCeEEEEEecc
Confidence            6542 333443 567899999999999999999764

>KOG0292|consensus

Probab=100.00  E-value=6.6e-37  Score=261.28  Aligned_cols=279  Identities=15%  Similarity=0.268  Sum_probs=246.1

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD  104 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  104 (356)
                      +..-+..|..++|+|..   .+++++-..|.|++||..-  ..++..+..|.++|..++|+|.+.++++|+.|..|+||+
T Consensus         5 fEskSsRvKglsFHP~r---PwILtslHsG~IQlWDYRM--~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKR---PWILTSLHSGVIQLWDYRM--GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhcccccccceecCCCC---CEEEEeecCceeeeehhhh--hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEe
Confidence            34456789999999998   9999999999999999987  466688999999999999999999999999999999999


Q ss_pred             cCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEEecCC--CeEEEEecCC
Q psy12911        105 LASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCADVDY--PLAVVGTAGR  180 (356)
Q Consensus       105 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~d~  180 (356)
                      ..+.+++. +.+|-..|..+.|+  +.-..|++++.|.+|+||+..+++++..+.+|.. ++|..+.+  +.+++++-|.
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FH--heyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ  157 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFH--HEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ  157 (1202)
T ss_pred             cccceehhhhccccceeEEeecc--CCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc
Confidence            99999886 89999999999999  9999999999999999999999999999999874 66666555  6999999999


Q ss_pred             eEEEEeCCCCcc---------------------------ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEE
Q psy12911        181 GIVLYQLEGKPQ---------------------------EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQ  233 (356)
Q Consensus       181 ~i~i~d~~~~~~---------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~  233 (356)
                      +|++||+..-..                           ..+.+...|...|+-++|+|.    -..+++|+.|..|++|
T Consensus       158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT----lpliVSG~DDRqVKlW  233 (1202)
T KOG0292|consen  158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT----LPLIVSGADDRQVKLW  233 (1202)
T ss_pred             eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC----cceEEecCCcceeeEE
Confidence            999999965211                           122233457778999999998    6799999999999999


Q ss_pred             EeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECC
Q psy12911        234 YVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNH  313 (356)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  313 (356)
                      .++....=.+-+..+|..           .|.++-|+|...++++.++|++|+|||+...+.+++++...+..+.++-+|
T Consensus       234 rmnetKaWEvDtcrgH~n-----------nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP  302 (1202)
T KOG0292|consen  234 RMNETKAWEVDTCRGHYN-----------NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP  302 (1202)
T ss_pred             EeccccceeehhhhcccC-----------CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC
Confidence            998765455667788887           899999999999999999999999999999999999987788999999999


Q ss_pred             CCCEEEEEeccC
Q psy12911        314 NGQIFAYAVSYD  325 (356)
Q Consensus       314 ~~~~l~~~s~~d  325 (356)
                      ..+++|.|-..+
T Consensus       303 ~lNLfAAgHDsG  314 (1202)
T KOG0292|consen  303 ELNLFAAGHDSG  314 (1202)
T ss_pred             CcceeeeecCCc
Confidence            999999986544

>KOG0276|consensus

Probab=100.00  E-value=2.2e-36  Score=249.00  Aligned_cols=279  Identities=15%  Similarity=0.230  Sum_probs=249.0

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      +.+..|+..|.++.|+|..   ..++++-.+|.|.||+.++  +.+++.+....-+|.+..|-+..+.+++|+.|..|+|
T Consensus         7 rk~~~rSdRVKsVd~HPte---Pw~la~LynG~V~IWnyet--qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrV   81 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTE---PWILAALYNGDVQIWNYET--QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRV   81 (794)
T ss_pred             hHhhccCCceeeeecCCCC---ceEEEeeecCeeEEEeccc--ceeeeeeeecccchhhheeeeccceEEEecCCceEEE
Confidence            3455699999999999998   9999999999999999998  7788899889999999999999999999999999999


Q ss_pred             EEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeCCCe-eEEEecCC---CeEEEE
Q psy12911        103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINLPER-CYCADVDY---PLAVVG  176 (356)
Q Consensus       103 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~-~~~~~~~~---~~~~~~  176 (356)
                      |+.++++.+. +..|...|++++.+  |...++++++.|-+|++||.+.. .+.+++++|.. ++++.+++   +.++++
T Consensus        82 fnynt~ekV~~FeAH~DyIR~iavH--Pt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~  159 (794)
T KOG0276|consen   82 FNYNTGEKVKTFEAHSDYIRSIAVH--PTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA  159 (794)
T ss_pred             EecccceeeEEeeccccceeeeeec--CCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence            9999999887 88999999999999  88999999999999999999876 68899998875 55555544   589999


Q ss_pred             ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG  256 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (356)
                      +-|++|++|.+.........  ..|...|.|+.+.+.+.  ..++++|+.|..++|||+.+.  .++.++.+|..     
T Consensus       160 sLDrTVKVWslgs~~~nfTl--~gHekGVN~Vdyy~~gd--kpylIsgaDD~tiKvWDyQtk--~CV~TLeGHt~-----  228 (794)
T KOG0276|consen  160 SLDRTVKVWSLGSPHPNFTL--EGHEKGVNCVDYYTGGD--KPYLISGADDLTIKVWDYQTK--SCVQTLEGHTN-----  228 (794)
T ss_pred             eccccEEEEEcCCCCCceee--eccccCcceEEeccCCC--cceEEecCCCceEEEeecchH--HHHHHhhcccc-----
Confidence            99999999999886543332  36888999999998743  458999999999999999877  78999999998     


Q ss_pred             CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                            .|..+.|+|.-.++++|++||++|||+..+-++..++.-.-.+|++++-.+.++.++.|...+
T Consensus       229 ------Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg  291 (794)
T KOG0276|consen  229 ------NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEG  291 (794)
T ss_pred             ------cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCC
Confidence                  899999999999999999999999999999988888887788999999999999999887544

>KOG0284|consensus

Probab=100.00  E-value=5.6e-38  Score=245.73  Aligned_cols=254  Identities=19%  Similarity=0.299  Sum_probs=213.8

Q ss_pred             cCCCCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCC-cceeEEEEccCCCe
Q psy12911         12 TTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS-EPVLDVAWIDDGTK   90 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~   90 (356)
                      ++.+...+.-..++++|..+|+++.|++++   .++++|+.+|.|++|+..-   ..++.++.|. ..|++++|+|+...
T Consensus       121 tLWNg~~fnFEtilQaHDs~Vr~m~ws~~g---~wmiSgD~gG~iKyWqpnm---nnVk~~~ahh~eaIRdlafSpnDsk  194 (464)
T KOG0284|consen  121 TLWNGTSFNFETILQAHDSPVRTMKWSHNG---TWMISGDKGGMIKYWQPNM---NNVKIIQAHHAEAIRDLAFSPNDSK  194 (464)
T ss_pred             EEecCceeeHHHHhhhhcccceeEEEccCC---CEEEEcCCCceEEecccch---hhhHHhhHhhhhhhheeccCCCCce
Confidence            444555555556788999999999999999   9999999999999999876   2334455554 99999999999999


Q ss_pred             EEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eE--EE
Q psy12911         91 VFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CY--CA  166 (356)
Q Consensus        91 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~--~~  166 (356)
                      +++++.||+|+|||....+..+ +.+|.-.|.+++|+  |...+|++++.|..|++||.++++++.++..|.. ++  .+
T Consensus       195 F~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH--P~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f  272 (464)
T KOG0284|consen  195 FLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH--PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKF  272 (464)
T ss_pred             eEEecCCCeEEEEeccCCchhheeccCCCCcceeccC--CccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEE
Confidence            9999999999999998776654 78999999999999  8888999999999999999999999999998875 33  45


Q ss_pred             ecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce-
Q psy12911        167 DVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT-  245 (356)
Q Consensus       167 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~-  245 (356)
                      ..++++|++++.|..+++||++..+...  ....|+..++++.|+|-.   ..+|.+|+.||.+..|.+...  +++.. 
T Consensus       273 ~~n~N~Llt~skD~~~kv~DiR~mkEl~--~~r~Hkkdv~~~~WhP~~---~~lftsgg~Dgsvvh~~v~~~--~p~~~i  345 (464)
T KOG0284|consen  273 NPNGNWLLTGSKDQSCKVFDIRTMKELF--TYRGHKKDVTSLTWHPLN---ESLFTSGGSDGSVVHWVVGLE--EPLGEI  345 (464)
T ss_pred             cCCCCeeEEccCCceEEEEehhHhHHHH--Hhhcchhhheeecccccc---ccceeeccCCCceEEEecccc--ccccCC
Confidence            5667899999999999999999553322  233588899999999985   678999999999999999744  22322 


Q ss_pred             eeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        246 FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      -.+|..           .|++++|+|-|.+|++|+.|.++++|.-.
T Consensus       346 ~~AHd~-----------~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  346 PPAHDG-----------EIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             Cccccc-----------ceeeeeccccceeEeecCCCcceeeeccC
Confidence            345665           89999999999999999999999999753

>KOG0643|consensus

Probab=100.00  E-value=1.1e-35  Score=220.77  Aligned_cols=280  Identities=14%  Similarity=0.199  Sum_probs=232.9

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  103 (356)
                      .++||..+++.+.|+.+|   .+|++++.|.++.||-..+ + ..+-++.+|.+.|+++....+.+++++|+.|.++++|
T Consensus         5 ~l~GHERplTqiKyN~eG---DLlFscaKD~~~~vw~s~n-G-erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREG---DLLFSCAKDSTPTVWYSLN-G-ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecCCC---cEEEEecCCCCceEEEecC-C-ceeeeecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence            578999999999999999   9999999999999998866 3 3448899999999999999999999999999999999


Q ss_pred             EcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC-----CeEEEEeCC-------CCCceEEEeCCCe---eEEEec
Q psy12911        104 DLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD-----KTLKFWDLR-------TPQPIMTINLPER---CYCADV  168 (356)
Q Consensus       104 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~-------~~~~~~~~~~~~~---~~~~~~  168 (356)
                      |+++|+.+.......+|..+.|+  .+|++++.+.++     +.|.++|++       ..++...+..+..   ...+.+
T Consensus        80 Dv~tGk~la~~k~~~~Vk~~~F~--~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~  157 (327)
T KOG0643|consen   80 DVETGKQLATWKTNSPVKRVDFS--FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP  157 (327)
T ss_pred             EcCCCcEEEEeecCCeeEEEeec--cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence            99999999988899999999999  899888877643     579999998       3455666665543   445666


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee
Q psy12911        169 DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC  248 (356)
Q Consensus       169 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~  248 (356)
                      .+..|++|..+|.|.+||++++...... ...|...|+.+.++++    ..++++++.|.+.++||...-  ..+.++..
T Consensus       158 l~~~ii~Ghe~G~is~~da~~g~~~v~s-~~~h~~~Ind~q~s~d----~T~FiT~s~Dttakl~D~~tl--~v~Kty~t  230 (327)
T KOG0643|consen  158 LGETIIAGHEDGSISIYDARTGKELVDS-DEEHSSKINDLQFSRD----RTYFITGSKDTTAKLVDVRTL--EVLKTYTT  230 (327)
T ss_pred             cCCEEEEecCCCcEEEEEcccCceeeec-hhhhccccccccccCC----cceEEecccCccceeeeccce--eeEEEeee
Confidence            7789999999999999999998554433 3367789999999999    899999999999999999765  56666666


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCe--------------EEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGT--------------FSFWDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~--------------i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                      ..            ||++.+++|...+++.|+....              -++|++-..+.+..+++|-++|++++|+|+
T Consensus       231 e~------------PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd  298 (327)
T KOG0643|consen  231 ER------------PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD  298 (327)
T ss_pred             cc------------cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence            55            8999999998877776654322              222333333567788999999999999999


Q ss_pred             CCEEEEEeccCCcCC
Q psy12911        315 GQIFAYAVSYDWSKG  329 (356)
Q Consensus       315 ~~~l~~~s~~d~~~~  329 (356)
                      |+..++|+.|++.+.
T Consensus       299 GksYsSGGEDG~VR~  313 (327)
T KOG0643|consen  299 GKSYSSGGEDGYVRL  313 (327)
T ss_pred             CcccccCCCCceEEE
Confidence            999999998886543

>KOG1446|consensus

Probab=100.00  E-value=1.4e-34  Score=220.10  Aligned_cols=284  Identities=18%  Similarity=0.214  Sum_probs=239.1

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC--
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC--   96 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--   96 (356)
                      +++.+.+..-.+.|+++.|+++|   .+|++++.|.+++|||...  ....+++..++-.|..++|....+.++.++.  
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G---~~litss~dDsl~LYd~~~--g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~   78 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDG---LLLITSSEDDSLRLYDSLS--GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE   78 (311)
T ss_pred             cccccccccCCCceeEEEecCCC---CEEEEecCCCeEEEEEcCC--CceeeEeecccccccEEEEecCCceEEEccCCC
Confidence            34445555577899999999999   9999999999999999988  3455788778889999999887777777776  


Q ss_pred             CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCCCeEE
Q psy12911         97 DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYPLAV  174 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~  174 (356)
                      |.+|+..++.+.+.++ +.+|...|++++.+  |-++.+++++.|++|++||++..++...+.... .+.++++.|-.++
T Consensus        79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~s--P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA  156 (311)
T KOG1446|consen   79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVS--PKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFA  156 (311)
T ss_pred             CCceEEEEeecCceEEEcCCCCceEEEEEec--CCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEE
Confidence            8999999999999998 88999999999999  777999999999999999999998888877655 5778899999999


Q ss_pred             EEecCCeEEEEeCCCCc-cccccc--cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911        175 VGTAGRGIVLYQLEGKP-QEFKKT--ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS  251 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~-~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  251 (356)
                      ++.....|++||++.-. .+....  ..+.....+.+.|+|+    |+.++.++..+.+++.|.-.+  ..+.++..+..
T Consensus       157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d----GK~iLlsT~~s~~~~lDAf~G--~~~~tfs~~~~  230 (311)
T KOG1446|consen  157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD----GKSILLSTNASFIYLLDAFDG--TVKSTFSGYPN  230 (311)
T ss_pred             EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC----CCEEEEEeCCCcEEEEEccCC--cEeeeEeeccC
Confidence            99988899999998752 222222  2244567899999999    899999999999999887655  46667776665


Q ss_pred             CCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC-CccceEEEEECCCCCEEEEEec
Q psy12911        252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA-MDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      ...        --....|+||++++++|+.||+|.+|+++++..+..+++ +.+++.++.|+|.-..++++++
T Consensus       231 ~~~--------~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  231 AGN--------LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             CCC--------cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence            221        124778999999999999999999999999999999988 6889999999999999999874

>KOG0288|consensus

Probab=100.00  E-value=1.2e-37  Score=244.22  Aligned_cols=290  Identities=16%  Similarity=0.234  Sum_probs=245.5

Q ss_pred             CCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE
Q psy12911         15 TPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA   94 (356)
Q Consensus        15 ~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~   94 (356)
                      +..|......+..|.+.|..+.|-++.   ..|++|+.|..|++|++.........++.+..++|+.+.|.+++++++++
T Consensus       161 ~~lpS~~~~~ld~h~gev~~v~~l~~s---dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa  237 (459)
T KOG0288|consen  161 DTLPSRALFVLDAHEGEVHDVEFLRNS---DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAA  237 (459)
T ss_pred             cccchhhhhhhhccccccceeEEccCc---chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEee
Confidence            344556667788999999999999997   89999999999999999886656778888999999999999999999999


Q ss_pred             cCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeE
Q psy12911         95 GCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLA  173 (356)
Q Consensus        95 ~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (356)
                      +.|+.+++|++...+... +.+|.+.|+++.|.  .....+++|+.|.+|++||+....+.+++-....+..+......+
T Consensus       238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~--~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~  315 (459)
T KOG0288|consen  238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK--LSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDV  315 (459)
T ss_pred             cCCCceeeeeccchhhhhhhcccccceeeehhh--ccccceeeccccchhhhhhhhhhheeccccccccccceEecceee
Confidence            999999999999988876 88999999999997  655569999999999999999999999888877777666667788


Q ss_pred             EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911        174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG  253 (356)
Q Consensus       174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  253 (356)
                      +++..|+.|++||++.......   .+..+.|+++..+++    +..+++++.|.++.+.|++....  ...+.+...  
T Consensus       316 ~SgH~DkkvRfwD~Rs~~~~~s---v~~gg~vtSl~ls~~----g~~lLsssRDdtl~viDlRt~eI--~~~~sA~g~--  384 (459)
T KOG0288|consen  316 ISGHFDKKVRFWDIRSADKTRS---VPLGGRVTSLDLSMD----GLELLSSSRDDTLKVIDLRTKEI--RQTFSAEGF--  384 (459)
T ss_pred             eecccccceEEEeccCCceeeE---eecCcceeeEeeccC----CeEEeeecCCCceeeeecccccE--EEEeecccc--
Confidence            9999999999999998754322   245679999999999    88899999999999999987633  333322111  


Q ss_pred             CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCcc--ceEEEEECCCCCEEEEEeccC
Q psy12911        254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDM--SISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~s~~d  325 (356)
                           ......+.+.|||++.|+|+|+.||.|+||++.++++...+.....  .|++++|+|.|..|++++.+.
T Consensus       385 -----k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~  453 (459)
T KOG0288|consen  385 -----KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK  453 (459)
T ss_pred             -----ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc
Confidence                 0011488999999999999999999999999999999888775544  599999999999999997543

>KOG0281|consensus

Probab=100.00  E-value=3e-37  Score=237.38  Aligned_cols=261  Identities=16%  Similarity=0.256  Sum_probs=218.9

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  106 (356)
                      .....|.|+.+..     ..+++|..|.+|+|||..+  ....+.+.||++.|.|+.|.  .+.|++|+.|.+|++||++
T Consensus       195 e~skgVYClQYDD-----~kiVSGlrDnTikiWD~n~--~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~  265 (499)
T KOG0281|consen  195 ENSKGVYCLQYDD-----EKIVSGLRDNTIKIWDKNS--LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN  265 (499)
T ss_pred             ccCCceEEEEecc-----hhhhcccccCceEEecccc--HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc
Confidence            3567899999865     4699999999999999987  66678899999999999995  5699999999999999999


Q ss_pred             CCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc---eEEEeCCC-eeEEEecCCCeEEEEecCCe
Q psy12911        107 SNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP---IMTINLPE-RCYCADVDYPLAVVGTAGRG  181 (356)
Q Consensus       107 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~d~~  181 (356)
                      +++++. +..|.+.|..+.|+    ..++++++.|.++.+||+.+...   .+.+.+|. .+-.++++..++++++.|.+
T Consensus       266 tge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRT  341 (499)
T KOG0281|consen  266 TGEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT  341 (499)
T ss_pred             CCchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCce
Confidence            999987 88999999999996    35899999999999999987652   23344444 35567788889999999999


Q ss_pred             EEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccc
Q psy12911        182 IVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDI  261 (356)
Q Consensus       182 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (356)
                      |++|++.+..  .......|+..|.|+.+.      +.++++|+.|.+|++||+..+  .++..+++|..          
T Consensus       342 ikvW~~st~e--fvRtl~gHkRGIAClQYr------~rlvVSGSSDntIRlwdi~~G--~cLRvLeGHEe----------  401 (499)
T KOG0281|consen  342 IKVWSTSTCE--FVRTLNGHKRGIACLQYR------DRLVVSGSSDNTIRLWDIECG--ACLRVLEGHEE----------  401 (499)
T ss_pred             EEEEecccee--eehhhhcccccceehhcc------CeEEEecCCCceEEEEecccc--HHHHHHhchHH----------
Confidence            9999998864  233334566666666654      568999999999999999887  88999999998          


Q ss_pred             cceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce---------ecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        262 YAVNGIVFHPVHGTLATVGSEGTFSFWDKDART---------KLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       262 ~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                       -|.++.|  |.+.+++|+.||+|+|||+.++.         ++..+..|++.|-.+.|  |...+++++.||
T Consensus       402 -LvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd  469 (499)
T KOG0281|consen  402 -LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD  469 (499)
T ss_pred             -hhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence             8999999  67899999999999999998763         34556678999999998  567788888776

>KOG0318|consensus

Probab=100.00  E-value=1.8e-34  Score=233.09  Aligned_cols=290  Identities=18%  Similarity=0.201  Sum_probs=237.2

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      -.+.||...|++++|-|..  +-.+++|+.|++|.+|+-..  .+...++..|..-|+++.|+|||.++++++.||+|.+
T Consensus       141 Gei~GhSr~ins~~~KpsR--PfRi~T~sdDn~v~ffeGPP--FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~i  216 (603)
T KOG0318|consen  141 GEITGHSRRINSVDFKPSR--PFRIATGSDDNTVAFFEGPP--FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYI  216 (603)
T ss_pred             ceeeccceeEeeeeccCCC--ceEEEeccCCCeEEEeeCCC--eeeeecccccccceeeEEECCCCCeEEEecCCccEEE
Confidence            4578999999999999987  67899999999999998765  5566778889999999999999999999999999999


Q ss_pred             EEcCCCceee-ec---ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe----eEEEecCCCeEE
Q psy12911        103 WDLASNQSMQ-VA---QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER----CYCADVDYPLAV  174 (356)
Q Consensus       103 wd~~~~~~~~-~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~  174 (356)
                      ||-.+++.+. +.   +|.+.|.+++|+  ||+..+++++.|.+++|||+.+.++++++.....    .+.+-+..+.|+
T Consensus       217 yDGktge~vg~l~~~~aHkGsIfalsWs--PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lI  294 (603)
T KOG0318|consen  217 YDGKTGEKVGELEDSDAHKGSIFALSWS--PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLI  294 (603)
T ss_pred             EcCCCccEEEEecCCCCccccEEEEEEC--CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEE
Confidence            9999999876 33   699999999999  9999999999999999999999999999986653    445555688999


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCc---------ce
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDN---------FT  245 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~---------~~  245 (356)
                      +.+.+|.|.+++.....  .......|...|+++..+++    +..+++|+.||.|.-|+...+....+         ..
T Consensus       295 tVSl~G~in~ln~~d~~--~~~~i~GHnK~ITaLtv~~d----~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~  368 (603)
T KOG0318|consen  295 TVSLSGTINYLNPSDPS--VLKVISGHNKSITALTVSPD----GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG  368 (603)
T ss_pred             EEEcCcEEEEecccCCC--hhheecccccceeEEEEcCC----CCEEEeeccCceEEEEecCCccccccccccccceEEE
Confidence            99999999999998876  33344478899999999999    78999999999999999854432111         00


Q ss_pred             eeeec------------------------C-----------------------------------CCCCCCcccccceEE
Q psy12911        246 FKCHR------------------------S-----------------------------------NGGAGGVQDIYAVNG  266 (356)
Q Consensus       246 ~~~~~------------------------~-----------------------------------~~~~~~~~~~~~i~~  266 (356)
                      +..+.                        .                                   ........-.+...+
T Consensus       369 ~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~  448 (603)
T KOG0318|consen  369 MAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSA  448 (603)
T ss_pred             EeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccce
Confidence            00000                        0                                   000000112345678


Q ss_pred             EEEeCCCCEEEEEcCCCeEEEEEcCcceec--CCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        267 IVFHPVHGTLATVGSEGTFSFWDKDARTKL--KPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       267 i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                      ++++|++..+|.|+.||.|+||.+..+++.  ..+..|.++|++++||||+.|||++...
T Consensus       449 vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~  508 (603)
T KOG0318|consen  449 VAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS  508 (603)
T ss_pred             EEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC
Confidence            999999999999999999999999876543  3456799999999999999999998653

>KOG0319|consensus

Probab=100.00  E-value=8.4e-36  Score=249.78  Aligned_cols=282  Identities=20%  Similarity=0.292  Sum_probs=226.9

Q ss_pred             CceEEeCC-CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCC--eEEEEcC
Q psy12911         20 KDFEVVSP-PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT--KVFMAGC   96 (356)
Q Consensus        20 ~~~~~~~~-h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~   96 (356)
                      +.++..+. |+++|.-++|+|.+   .+|++|+.|+.++|||+..  ......+++|.+.|.++.|.|+-.  .|++|..
T Consensus        95 k~irswKa~He~Pvi~ma~~~~g---~LlAtggaD~~v~VWdi~~--~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~  169 (775)
T KOG0319|consen   95 KLIRSWKAIHEAPVITMAFDPTG---TLLATGGADGRVKVWDIKN--GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGAT  169 (775)
T ss_pred             hHhHhHhhccCCCeEEEEEcCCC---ceEEeccccceEEEEEeeC--CEEEEEecCCCceEEEEEeCCccchhheeecCC
Confidence            44555666 99999999999999   9999999999999999987  566689999999999999999654  5889999


Q ss_pred             CCeEEEEEcCCCce-ee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC---------------
Q psy12911         97 DKTVKCWDLASNQS-MQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL---------------  159 (356)
Q Consensus        97 dg~i~vwd~~~~~~-~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------  159 (356)
                      |+++++||++.+.. +. ...|.+.|+++.|+  +|+..+++++.|..+.+||+.+.+..++++.               
T Consensus       170 D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~--~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~  247 (775)
T KOG0319|consen  170 DGTVRVWNLNDKRTCLHTMILHKSAVTSLAFS--EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELG  247 (775)
T ss_pred             CceEEEEEcccCchHHHHHHhhhhheeeeeec--cCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcC
Confidence            99999999996654 43 78899999999999  9999999999999999999865443322211               


Q ss_pred             -------------------------------C-Ce---------------------------------------------
Q psy12911        160 -------------------------------P-ER---------------------------------------------  162 (356)
Q Consensus       160 -------------------------------~-~~---------------------------------------------  162 (356)
                                                     + ..                                             
T Consensus       248 ~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~  327 (775)
T KOG0319|consen  248 GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEIL  327 (775)
T ss_pred             CcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhe
Confidence                                           0 00                                             


Q ss_pred             ----------------------------------------eEEEe--cCCCeEEEEecCCeEEEEeCCCCcc--------
Q psy12911        163 ----------------------------------------CYCAD--VDYPLAVVGTAGRGIVLYQLEGKPQ--------  192 (356)
Q Consensus       163 ----------------------------------------~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~--------  192 (356)
                                                              +++++  ..+.++++++.|.++++|.++++..        
T Consensus       328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~  407 (775)
T KOG0319|consen  328 DMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA  407 (775)
T ss_pred             eeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh
Confidence                                                    00011  0111335566666666665533200        


Q ss_pred             ----------------------------------------------ccccccCcccccceEEEeecCCCCCCCeEEEeec
Q psy12911        193 ----------------------------------------------EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV  226 (356)
Q Consensus       193 ----------------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  226 (356)
                                                                    ..+.....|...|++++++|+    ..++++|+.
T Consensus       408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n----dkLiAT~Sq  483 (775)
T KOG0319|consen  408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN----DKLIATGSQ  483 (775)
T ss_pred             cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC----CceEEeccc
Confidence                                                          000011236678899999998    789999999


Q ss_pred             CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccce
Q psy12911        227 EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSI  306 (356)
Q Consensus       227 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  306 (356)
                      |.+.+||+++..  ....++.+|+.           .|+++.|+|..+.|||+|.|++|+||.+.+..++++|.+|+..|
T Consensus       484 DktaKiW~le~~--~l~~vLsGH~R-----------Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aV  550 (775)
T KOG0319|consen  484 DKTAKIWDLEQL--RLLGVLSGHTR-----------GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAV  550 (775)
T ss_pred             ccceeeecccCc--eEEEEeeCCcc-----------ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcccee
Confidence            999999999844  77889999998           89999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCCEEEEEeccC
Q psy12911        307 STCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       307 ~~~~~s~~~~~l~~~s~~d  325 (356)
                      ..+.|-.+|+.|+++++|+
T Consensus       551 lra~F~~~~~qliS~~adG  569 (775)
T KOG0319|consen  551 LRASFIRNGKQLISAGADG  569 (775)
T ss_pred             EeeeeeeCCcEEEeccCCC
Confidence            9999999999999999877

>KOG1407|consensus

Probab=100.00  E-value=3.6e-35  Score=217.27  Aligned_cols=277  Identities=16%  Similarity=0.186  Sum_probs=235.6

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEE
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVK  101 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~  101 (356)
                      +.+++|...|.+++|+.+|   ..|++|+.|+++.+|+++...........+|.+.|-.++|.| ....+++++.|.+|+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g---~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDG---TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             HHhhhhhhcceEEEEcccC---ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence            5577899999999999999   999999999999999998854444455678999999999998 566899999999999


Q ss_pred             EEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCee--EEEecCCCeEEEEecC
Q psy12911        102 CWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERC--YCADVDYPLAVVGTAG  179 (356)
Q Consensus       102 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d  179 (356)
                      +||++.+++.........-.-+.|+  |+|.+++.++.|..|.+.|.++.+.....+.....  .++...++.++.....
T Consensus        91 ~wd~r~~k~~~~i~~~~eni~i~ws--p~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl  168 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENINITWS--PDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL  168 (313)
T ss_pred             EEEeccCcEEEEeeccCcceEEEEc--CCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence            9999999998866666666678899  99999999999999999999999888777665543  4444555677777778


Q ss_pred             CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcc
Q psy12911        180 RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQ  259 (356)
Q Consensus       180 ~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (356)
                      |.|.|.....-+.  ......|.....|+.|.|+    ++++++|+.|..+.+||++.-  .++..+.-+.-        
T Consensus       169 G~v~ILsypsLkp--v~si~AH~snCicI~f~p~----GryfA~GsADAlvSLWD~~EL--iC~R~isRldw--------  232 (313)
T KOG1407|consen  169 GCVEILSYPSLKP--VQSIKAHPSNCICIEFDPD----GRYFATGSADALVSLWDVDEL--ICERCISRLDW--------  232 (313)
T ss_pred             ceEEEEecccccc--ccccccCCcceEEEEECCC----CceEeeccccceeeccChhHh--hhheeeccccC--------
Confidence            9999998875432  2223357788899999999    899999999999999999754  56666666665        


Q ss_pred             cccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        260 DIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       260 ~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                         +|..+.||.||++||+|++|..|-|=++++|..+..++ ++++...|+|+|...+||.+.+|
T Consensus       233 ---pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  233 ---PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             ---ceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence               99999999999999999999999999999999999987 68889999999999999999864

>KOG0299|consensus

Probab=100.00  E-value=9e-35  Score=231.14  Aligned_cols=310  Identities=18%  Similarity=0.251  Sum_probs=243.5

Q ss_pred             eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCce--eee-------------ee-ccCCcceeEEEEc
Q psy12911         22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKT--IPK-------------SM-QGMSEPVLDVAWI   85 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~--~~~-------------~~-~~~~~~v~~~~~s   85 (356)
                      +.....|.-+|.||+++|++   .+.++++.+++|.-|++.++...  ...             .- .+|...+.+++.+
T Consensus       135 ~~~~~~H~~s~~~vals~d~---~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS  211 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDD---KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS  211 (479)
T ss_pred             ceeeccccCcceEEEeeccc---cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence            77888999999999999999   99999999999999999874311  000             11 3788999999999


Q ss_pred             cCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-ee
Q psy12911         86 DDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RC  163 (356)
Q Consensus        86 ~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~  163 (356)
                      +||++|++|+.|..|.||+.++.+.+. +.+|.+.|.+++|-  .....+++++.|+.|++|++.....+.++-+|. .+
T Consensus       212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr--~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v  289 (479)
T KOG0299|consen  212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR--KGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV  289 (479)
T ss_pred             CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeee--cCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence            999999999999999999999999887 69999999999998  666789999999999999999988888877666 45


Q ss_pred             EEEecCC--CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911        164 YCADVDY--PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK  241 (356)
Q Consensus       164 ~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~  241 (356)
                      ..++...  ..+.+|+.|+++++|++...   .+.+...+...+.|++|..+     ..+++|+.+|.|.+|++-..  +
T Consensus       290 ~~IdaL~reR~vtVGgrDrT~rlwKi~ee---sqlifrg~~~sidcv~~In~-----~HfvsGSdnG~IaLWs~~KK--k  359 (479)
T KOG0299|consen  290 LGIDALSRERCVTVGGRDRTVRLWKIPEE---SQLIFRGGEGSIDCVAFIND-----EHFVSGSDNGSIALWSLLKK--K  359 (479)
T ss_pred             eeechhcccceEEeccccceeEEEecccc---ceeeeeCCCCCeeeEEEecc-----cceeeccCCceEEEeeeccc--C
Confidence            5666554  45666779999999999544   34444466788999999887     58999999999999999776  5


Q ss_pred             CcceeeeecCC-CCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc----eecCCCCCCccceEEEEECCCCC
Q psy12911        242 DNFTFKCHRSN-GGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR----TKLKPSEAMDMSISTCALNHNGQ  316 (356)
Q Consensus       242 ~~~~~~~~~~~-~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~~  316 (356)
                      ++++.....+. .......+..+|++++..|...++|+|+.+|.|++|-+..+    +++..+. ..+.|++++|+++|+
T Consensus       360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGK  438 (479)
T ss_pred             ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCC
Confidence            56665433322 22233333458999999999999999999999999999887    3444554 578999999999999


Q ss_pred             EEEEEeccCCcCCCccCCCCCCceeeecccc
Q psy12911        317 IFAYAVSYDWSKGHEHNNPNKGNAIFLRPCF  347 (356)
Q Consensus       317 ~l~~~s~~d~~~~~~~~~~~~~~~~~~~~~~  347 (356)
                      .|++|.+-....+...-.........+.++.
T Consensus       439 ~ivagiGkEhRlGRW~~~k~~~~~~~v~~~~  469 (479)
T KOG0299|consen  439 RIVAGIGKEHRLGRWWCLKSGKNSGVVSPRR  469 (479)
T ss_pred             EEEEecccccccceeeEeecccccceeeeee
Confidence            9999877553333222222334444444443

>KOG0283|consensus

Probab=100.00  E-value=6e-35  Score=248.61  Aligned_cols=250  Identities=19%  Similarity=0.292  Sum_probs=208.7

Q ss_pred             EeC-CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC--------------------------------------
Q psy12911         24 VVS-PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN--------------------------------------   64 (356)
Q Consensus        24 ~~~-~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--------------------------------------   64 (356)
                      .+. +|.++|.++.||+||   +|||+|+.|+.|+||.+...                                      
T Consensus       261 e~~~ah~gaIw~mKFS~DG---KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDG---KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             ccccccCCcEEEEEeCCCC---ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            345 899999999999999   99999999999999987650                                      


Q ss_pred             --------------------CceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEE
Q psy12911         65 --------------------GKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCH  124 (356)
Q Consensus        65 --------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~  124 (356)
                                          ...+...+.||.+.|..+.||.++ +|++++.|.+|++|++...+++..+.|...|+|++
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa  416 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA  416 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence                                001223567999999999999765 99999999999999999999999999999999999


Q ss_pred             EEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--eeEEEecCCCeEEEEecCCeEEEEeCCCCcccccccc----
Q psy12911        125 WIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE----  198 (356)
Q Consensus       125 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----  198 (356)
                      |+| -|.+++++|+-||.||||++...+.+.-...+.  ..+|+.++|+..++|+.+|.+++|+....+.......    
T Consensus       417 FnP-vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  417 FNP-VDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             ecc-cCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence            997 688999999999999999999888877766665  5678888999999999999999999988653222111    


Q ss_pred             --CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEE
Q psy12911        199 --SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTL  276 (356)
Q Consensus       199 --~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l  276 (356)
                        ......|+.+.+.|..   ...+++.+.|..|+|||.+..  ..+..+++.....         .-....|+.||++|
T Consensus       496 ~Kk~~~~rITG~Q~~p~~---~~~vLVTSnDSrIRI~d~~~~--~lv~KfKG~~n~~---------SQ~~Asfs~Dgk~I  561 (712)
T KOG0283|consen  496 KKKKQGKRITGLQFFPGD---PDEVLVTSNDSRIRIYDGRDK--DLVHKFKGFRNTS---------SQISASFSSDGKHI  561 (712)
T ss_pred             CccccCceeeeeEecCCC---CCeEEEecCCCceEEEeccch--hhhhhhcccccCC---------cceeeeEccCCCEE
Confidence              1112379999999874   457999999999999999766  6788888776522         34567899999999


Q ss_pred             EEEcCCCeEEEEEcCc
Q psy12911        277 ATVGSEGTFSFWDKDA  292 (356)
Q Consensus       277 ~s~~~dg~i~iwd~~~  292 (356)
                      +++++|..|++|+...
T Consensus       562 Vs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  562 VSASEDSWVYIWKNDS  577 (712)
T ss_pred             EEeecCceEEEEeCCC
Confidence            9999999999999743

>KOG0319|consensus

Probab=100.00  E-value=7.9e-35  Score=243.97  Aligned_cols=282  Identities=19%  Similarity=0.211  Sum_probs=238.7

Q ss_pred             CCCceEEeCCCCCCeeEEEec-CCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFS-PSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~-~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      ..+....+-|..+.|..|+|- |+.   ++||+++..+.+++|++.+...   ..+.+|+..|.++....+|-+|++|+.
T Consensus       312 ~l~i~k~ivG~ndEI~Dm~~lG~e~---~~laVATNs~~lr~y~~~~~~c---~ii~GH~e~vlSL~~~~~g~llat~sK  385 (775)
T KOG0319|consen  312 ELTIVKQIVGYNDEILDMKFLGPEE---SHLAVATNSPELRLYTLPTSYC---QIIPGHTEAVLSLDVWSSGDLLATGSK  385 (775)
T ss_pred             ccEEehhhcCCchhheeeeecCCcc---ceEEEEeCCCceEEEecCCCce---EEEeCchhheeeeeecccCcEEEEecC
Confidence            334445566888999999986 455   8999999999999999887322   478999999999996667789999999


Q ss_pred             CCeEEEEEcCCCcee-----eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc---eEEE------eCC--
Q psy12911         97 DKTVKCWDLASNQSM-----QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP---IMTI------NLP--  160 (356)
Q Consensus        97 dg~i~vwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~------~~~--  160 (356)
                      |+++++|.++.+...     ...+|+..|.+++++. .....|++++.|+++++|++...+.   ...+      ..|  
T Consensus       386 D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~-~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK  464 (775)
T KOG0319|consen  386 DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSK-LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK  464 (775)
T ss_pred             CceEEEEEecCCcchhhhhhhhcccccccceeeecc-cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc
Confidence            999999998554332     2568999999999973 4456899999999999999976321   1111      122  


Q ss_pred             -CeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC
Q psy12911        161 -ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN  239 (356)
Q Consensus       161 -~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~  239 (356)
                       -+++.++++..++++|+.|.+.++|+++..  ........|...+.++.|+|.    ...+++++.|++|+||.+... 
T Consensus       465 dIN~Vaia~ndkLiAT~SqDktaKiW~le~~--~l~~vLsGH~RGvw~V~Fs~~----dq~laT~SgD~TvKIW~is~f-  537 (775)
T KOG0319|consen  465 DINCVAIAPNDKLIATGSQDKTAKIWDLEQL--RLLGVLSGHTRGVWCVSFSKN----DQLLATCSGDKTVKIWSISTF-  537 (775)
T ss_pred             cccceEecCCCceEEecccccceeeecccCc--eEEEEeeCCccceEEEEeccc----cceeEeccCCceEEEEEeccc-
Confidence             256777888889999999999999999943  334445578999999999999    789999999999999999877 


Q ss_pred             CCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEE
Q psy12911        240 PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFA  319 (356)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  319 (356)
                       .++.++.+|..           .|..+.|-.+|..|++++.||.|++|++++++++.++.+|++.|++++-+|.+.+++
T Consensus       538 -SClkT~eGH~~-----------aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~  605 (775)
T KOG0319|consen  538 -SCLKTFEGHTS-----------AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFV  605 (775)
T ss_pred             -eeeeeecCccc-----------eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeE
Confidence             78999999998           999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccC
Q psy12911        320 YAVSYD  325 (356)
Q Consensus       320 ~~s~~d  325 (356)
                      +|++|+
T Consensus       606 tgg~Dg  611 (775)
T KOG0319|consen  606 TGGGDG  611 (775)
T ss_pred             ecCCCe
Confidence            999877

>KOG0645|consensus

Probab=100.00  E-value=6.4e-34  Score=211.70  Aligned_cols=238  Identities=19%  Similarity=0.316  Sum_probs=199.0

Q ss_pred             CCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEc
Q psy12911         26 SPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL  105 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  105 (356)
                      .+|+..|++++|+|.|   ++||+|+.|.++.||.-..+....+..+.||...|.+++|+++|++||+++.|..|.||.+
T Consensus        58 ~~hkrsVRsvAwsp~g---~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~  134 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHG---RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI  134 (312)
T ss_pred             ccchheeeeeeecCCC---cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence            4799999999999999   9999999999999999887777888999999999999999999999999999999999999


Q ss_pred             CCCce---ee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC---CCceEEEeCCC-eeEEEe--cCCCeEEE
Q psy12911        106 ASNQS---MQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT---PQPIMTINLPE-RCYCAD--VDYPLAVV  175 (356)
Q Consensus       106 ~~~~~---~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~-~~~~~~--~~~~~~~~  175 (356)
                      ..+..   .. +..|...|..+.|+  |...+|++++.|.+|++|+-..   -++++++.++. .+.++.  ..+..+++
T Consensus       135 deddEfec~aVL~~HtqDVK~V~WH--Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s  212 (312)
T KOG0645|consen  135 DEDDEFECIAVLQEHTQDVKHVIWH--PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVS  212 (312)
T ss_pred             cCCCcEEEEeeeccccccccEEEEc--CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEE
Confidence            86543   33 78899999999999  8888999999999999998762   25788998887 555554  45679999


Q ss_pred             EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce-----eeeec
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT-----FKCHR  250 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~-----~~~~~  250 (356)
                      ++.|++++||.....      ....+...+..++|. +     ..+++++.|+.|++|.-......+...     -..|.
T Consensus       213 ~sdD~tv~Iw~~~~~------~~~~~sr~~Y~v~W~-~-----~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe  280 (312)
T KOG0645|consen  213 CSDDGTVSIWRLYTD------LSGMHSRALYDVPWD-N-----GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHE  280 (312)
T ss_pred             ecCCcceEeeeeccC------cchhcccceEeeeec-c-----cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccc
Confidence            999999999997633      233456778888887 3     379999999999999775432222222     23444


Q ss_pred             CCCCCCCcccccceEEEEEeCC-CCEEEEEcCCCeEEEEEcC
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPV-HGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~-~~~l~s~~~dg~i~iwd~~  291 (356)
                      .           .|++++|.|. .++|++|+.||.|++|.+.
T Consensus       281 ~-----------dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  281 V-----------DVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             c-----------ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            4           7999999995 6899999999999999875

>KOG0275|consensus

Probab=100.00  E-value=2.6e-35  Score=224.98  Aligned_cols=281  Identities=12%  Similarity=0.196  Sum_probs=239.9

Q ss_pred             CCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCcee------eeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         26 SPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTI------PKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      -+.+..+-|..|+|||   ++|++|+.||-|.||+..++....      ...+--+..+|.|+.|+.|...||+|+.||.
T Consensus       210 Fg~KSh~EcA~FSPDg---qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk  286 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDG---QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK  286 (508)
T ss_pred             cccccchhheeeCCCC---ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence            4667889999999999   999999999999999998743211      1123347889999999999999999999999


Q ss_pred             EEEEEcCCCceee-e-cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEE
Q psy12911        100 VKCWDLASNQSMQ-V-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAV  174 (356)
Q Consensus       100 i~vwd~~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~  174 (356)
                      |++|.+++|.+++ + ..|+..|+++.|+  .|+..+++++.|.++++.-+.+|++++.+.+|..   -..+..++..++
T Consensus       287 IKvWri~tG~ClRrFdrAHtkGvt~l~FS--rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii  364 (508)
T KOG0275|consen  287 IKVWRIETGQCLRRFDRAHTKGVTCLSFS--RDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII  364 (508)
T ss_pred             EEEEEEecchHHHHhhhhhccCeeEEEEc--cCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE
Confidence            9999999999988 3 4799999999999  9999999999999999999999999999999885   345677888999


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                      +++.||+|++|+..+.+........+...++.++-..|..   +..++++...++++|.++..   +.+.++......+ 
T Consensus       365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKn---peh~iVCNrsntv~imn~qG---QvVrsfsSGkREg-  437 (508)
T KOG0275|consen  365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKN---PEHFIVCNRSNTVYIMNMQG---QVVRSFSSGKREG-  437 (508)
T ss_pred             EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCC---CceEEEEcCCCeEEEEeccc---eEEeeeccCCccC-
Confidence            9999999999999988765555555667888898888875   67899999999999988764   3444544322211 


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                             +...+.+.||.|.++.+.++|+.++.|...+|++-.++..|+..|..++-+|..+.||+-+.|+
T Consensus       438 -------GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDg  501 (508)
T KOG0275|consen  438 -------GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDG  501 (508)
T ss_pred             -------CceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccc
Confidence                   1567788999999999999999999999999999999999999999999999999999988765

>KOG0265|consensus

Probab=100.00  E-value=1.7e-34  Score=217.77  Aligned_cols=237  Identities=15%  Similarity=0.208  Sum_probs=200.9

Q ss_pred             eeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc--eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEE
Q psy12911         67 TIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ--SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLK  144 (356)
Q Consensus        67 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~  144 (356)
                      .+...+.+|++.|+.+.|+|+|.+|++|+.|..|.+|++....  ...+.+|.+.|..+.|.  .|+..|++++.|.+|+
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~--~d~s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGM--RDGSHILSCGTDKTVR  115 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeec--cCCCEEEEecCCceEE
Confidence            3445678999999999999999999999999999999975432  23478999999999999  9999999999999999


Q ss_pred             EEeCCCCCceEEEeCCCeeEEEec-C--C-CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCe
Q psy12911        145 FWDLRTPQPIMTINLPERCYCADV-D--Y-PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAG  220 (356)
Q Consensus       145 iwd~~~~~~~~~~~~~~~~~~~~~-~--~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  220 (356)
                      .||+++++.++.++.+..++.... .  + ..+.+++.|+++++||++++......   ..+.+++++.|...    +..
T Consensus       116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~---~~kyqltAv~f~d~----s~q  188 (338)
T KOG0265|consen  116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF---ENKYQLTAVGFKDT----SDQ  188 (338)
T ss_pred             EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc---ccceeEEEEEeccc----ccc
Confidence            999999999999999987654332 1  2 37788899999999999976543222   23678899999988    788


Q ss_pred             EEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc----ceec
Q psy12911        221 YGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA----RTKL  296 (356)
Q Consensus       221 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~----~~~~  296 (356)
                      +.+|+-|+.|++||++..  ...+++.+|..           +|+.+..+|+|.++.+-+.|.++++||++.    .+++
T Consensus       189 v~sggIdn~ikvWd~r~~--d~~~~lsGh~D-----------tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v  255 (338)
T KOG0265|consen  189 VISGGIDNDIKVWDLRKN--DGLYTLSGHAD-----------TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV  255 (338)
T ss_pred             eeeccccCceeeeccccC--cceEEeecccC-----------ceeeEEeccCCCccccccccceEEEEEecccCCCCceE
Confidence            999999999999999877  67999999999           999999999999999999999999999873    3446


Q ss_pred             CCCCCCc----cceEEEEECCCCCEEEEEeccC
Q psy12911        297 KPSEAMD----MSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       297 ~~~~~~~----~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ..+.+|.    .....++|||+++.+.+++.|.
T Consensus       256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr  288 (338)
T KOG0265|consen  256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR  288 (338)
T ss_pred             EEeecchhhhhhhcceeeccCCCCccccccccc
Confidence            6666653    3456789999999999998764

>KOG0281|consensus

Probab=100.00  E-value=3.1e-35  Score=226.35  Aligned_cols=250  Identities=20%  Similarity=0.309  Sum_probs=210.0

Q ss_pred             cCCCCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeE
Q psy12911         12 TTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l   91 (356)
                      ...+.+.......+.||++.|.|+.|..     +.|++|+.|.+|+|||+++  ..++.++.+|...|..+.|+  ..++
T Consensus       220 kiWD~n~~~c~~~L~GHtGSVLCLqyd~-----rviisGSSDsTvrvWDv~t--ge~l~tlihHceaVLhlrf~--ng~m  290 (499)
T KOG0281|consen  220 KIWDKNSLECLKILTGHTGSVLCLQYDE-----RVIVSGSSDSTVRVWDVNT--GEPLNTLIHHCEAVLHLRFS--NGYM  290 (499)
T ss_pred             EEeccccHHHHHhhhcCCCcEEeeeccc-----eEEEecCCCceEEEEeccC--CchhhHHhhhcceeEEEEEe--CCEE
Confidence            3445566677788999999999999964     6899999999999999998  34558888999999999997  3599


Q ss_pred             EEEcCCCeEEEEEcCCCceee----ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEE
Q psy12911         92 FMAGCDKTVKCWDLASNQSMQ----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCA  166 (356)
Q Consensus        92 ~~~~~dg~i~vwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~  166 (356)
                      ++++.|.++.+||+.....+.    +.+|...|+.+.|+    .+++++++.|.+|++|++.+++.++++.+|.+ +.|+
T Consensus       291 vtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIACl  366 (499)
T KOG0281|consen  291 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACL  366 (499)
T ss_pred             EEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc----cceEEEecCCceEEEEeccceeeehhhhcccccceeh
Confidence            999999999999998765432    67999999999985    45999999999999999999999999999886 6677


Q ss_pred             ecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC-----
Q psy12911        167 DVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK-----  241 (356)
Q Consensus       167 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-----  241 (356)
                      .+.+.++++|+.|.+|++||+..+..  ......|..-|.|+.|...      .+++|+.||+|++||+......     
T Consensus       367 QYr~rlvVSGSSDntIRlwdi~~G~c--LRvLeGHEeLvRciRFd~k------rIVSGaYDGkikvWdl~aaldpra~~~  438 (499)
T KOG0281|consen  367 QYRDRLVVSGSSDNTIRLWDIECGAC--LRVLEGHEELVRCIRFDNK------RIVSGAYDGKIKVWDLQAALDPRAPAS  438 (499)
T ss_pred             hccCeEEEecCCCceEEEEeccccHH--HHHHhchHHhhhheeecCc------eeeeccccceEEEEecccccCCccccc
Confidence            78888999999999999999998753  2334468888999999755      8999999999999999654322     


Q ss_pred             --CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee
Q psy12911        242 --DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK  295 (356)
Q Consensus       242 --~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~  295 (356)
                        ++.++..|.+           .|..+.|  |...+++++.|.+|.|||..++..
T Consensus       439 ~~Cl~~lv~hsg-----------RVFrLQF--D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  439 TLCLRTLVEHSG-----------RVFRLQF--DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             chHHHhhhhccc-----------eeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence              3444555555           8999999  677899999999999999887644

>KOG0313|consensus

Probab=100.00  E-value=9.5e-34  Score=220.16  Aligned_cols=270  Identities=18%  Similarity=0.288  Sum_probs=222.6

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCC---CeEEEEcCCCeEEEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG---TKVFMAGCDKTVKCW  103 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vw  103 (356)
                      .|.+.|.++...  +   ..|++|++||.+++||...   .....+.+|.++|.+++|-...   ..|++++.|.++++|
T Consensus       103 ~hdDWVSsv~~~--~---~~IltgsYDg~~riWd~~G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw  174 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--S---KWILTGSYDGTSRIWDLKG---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW  174 (423)
T ss_pred             cchhhhhhhccc--C---ceEEEeecCCeeEEEecCC---ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence            489999999988  4   7899999999999999876   4457889999999999885433   359999999999999


Q ss_pred             EcCCCceee-----ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-------------------------CCc
Q psy12911        104 DLASNQSMQ-----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-------------------------PQP  153 (356)
Q Consensus       104 d~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------------------------~~~  153 (356)
                      .++.++...     ..+|...|.++...  +++..+++|+.|..|.||+..+                         +.+
T Consensus       175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~--~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P  252 (423)
T KOG0313|consen  175 KWNVGENKVKALKVCRGHKRSVDSVSVD--SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP  252 (423)
T ss_pred             EecCchhhhhHHhHhcccccceeEEEec--CCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence            998776432     45899999999999  9999999999999999999321                         124


Q ss_pred             eEEEeCCCe-eEEEecC-CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEE
Q psy12911        154 IMTINLPER-CYCADVD-YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVA  231 (356)
Q Consensus       154 ~~~~~~~~~-~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~  231 (356)
                      +.++.+|.. +..+.+. ...+++++.|.+|+.||+.++.......   ......++..+|.    ..++++|+.|..++
T Consensus       253 ~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~---~~ksl~~i~~~~~----~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  253 LVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT---TNKSLNCISYSPL----SKLLASGSSDRHIR  325 (423)
T ss_pred             eEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeee---cCcceeEeecccc----cceeeecCCCCcee
Confidence            455555554 3333333 4588999999999999999876443332   3567899999998    78999999999999


Q ss_pred             EEEeCCCCCC-CcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcce-ecCCCCCCccceEE
Q psy12911        232 IQYVNPANPK-DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDART-KLKPSEAMDMSIST  308 (356)
Q Consensus       232 i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~  308 (356)
                      +||-+.+... ..+++.+|..           .|.++.|+|.. ..|++|+.|+++++||+++.+ ++..+.+|...|.+
T Consensus       326 l~DPR~~~gs~v~~s~~gH~n-----------wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~  394 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGHKN-----------WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLS  394 (423)
T ss_pred             ecCCCCCCCceeEEeeecchh-----------hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEE
Confidence            9999877554 4578899998           99999999977 678899999999999999887 89999999999999


Q ss_pred             EEECCCCCEEEEEeccC
Q psy12911        309 CALNHNGQIFAYAVSYD  325 (356)
Q Consensus       309 ~~~s~~~~~l~~~s~~d  325 (356)
                      +.|. ++.+|++|+.|.
T Consensus       395 vdW~-~~~~IvSGGaD~  410 (423)
T KOG0313|consen  395 VDWN-EGGLIVSGGADN  410 (423)
T ss_pred             Eecc-CCceEEeccCcc
Confidence            9996 567888888653

>KOG0306|consensus

Probab=100.00  E-value=1.8e-33  Score=236.38  Aligned_cols=274  Identities=18%  Similarity=0.294  Sum_probs=235.9

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      -.+.||+..|.++++|.+.   ..+++|+ .+.+++|+..+  ...++++.  .+.+.+..|-|.++++++|...|.+.+
T Consensus       367 i~~~GHR~dVRsl~vS~d~---~~~~Sga-~~SikiWn~~t--~kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~v  438 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDS---ILLASGA-GESIKIWNRDT--LKCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQV  438 (888)
T ss_pred             eeeccchhheeEEEeecCc---eeeeecC-CCcEEEEEccC--cceeEEec--cccEEEEEecCCCceEEEeccCCceEE
Confidence            3467999999999999997   6666665 56999999987  34446664  348999999999999999999999999


Q ss_pred             EEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-----CC--------ceEEEeCCCeeEEE--
Q psy12911        103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-----PQ--------PIMTINLPERCYCA--  166 (356)
Q Consensus       103 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~--------~~~~~~~~~~~~~~--  166 (356)
                      ||+.+...+. ...|.+.|++++.+  ||+..+++|+.|.+|++||..-     +.        ..++++....++|+  
T Consensus       439 fdlaS~~l~Eti~AHdgaIWsi~~~--pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~  516 (888)
T KOG0306|consen  439 FDLASASLVETIRAHDGAIWSISLS--PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV  516 (888)
T ss_pred             EEeehhhhhhhhhccccceeeeeec--CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE
Confidence            9999988876 67899999999999  9999999999999999999642     11        12445555665554  


Q ss_pred             ecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee
Q psy12911        167 DVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       167 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~  246 (356)
                      ++++.+++++--|.++++|-+++-+.  ....-.|.-+|.|+.++|+    ...+++|+.|.+|++|-++.+  .+-..+
T Consensus       517 Spdgk~LaVsLLdnTVkVyflDtlKF--flsLYGHkLPV~smDIS~D----SklivTgSADKnVKiWGLdFG--DCHKS~  588 (888)
T KOG0306|consen  517 SPDGKLLAVSLLDNTVKVYFLDTLKF--FLSLYGHKLPVLSMDISPD----SKLIVTGSADKNVKIWGLDFG--DCHKSF  588 (888)
T ss_pred             cCCCcEEEEEeccCeEEEEEecceee--eeeecccccceeEEeccCC----cCeEEeccCCCceEEeccccc--hhhhhh
Confidence            55578999999999999999998643  2333468899999999999    889999999999999999887  677888


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      -+|..           .|.++.|-|+..++.+++.|+.|+-||-..-+.++.+.+|...|++++.+|+|.+++++|.|-
T Consensus       589 fAHdD-----------Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~  656 (888)
T KOG0306|consen  589 FAHDD-----------SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK  656 (888)
T ss_pred             hcccC-----------ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCc
Confidence            89988           899999999999999999999999999999999999999999999999999999999998643

>KOG0266|consensus

Probab=100.00  E-value=1e-33  Score=244.16  Aligned_cols=248  Identities=21%  Similarity=0.309  Sum_probs=207.8

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      ....+.+|...|++++|+|++   .++++++.|++|+|||+.. .....+++.+|...|++++|+|+++++++|+.|++|
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~---~~l~s~s~D~tiriwd~~~-~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tv  270 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDG---SYLLSGSDDKTLRIWDLKD-DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTV  270 (456)
T ss_pred             hhccccccccceeeeEECCCC---cEEEEecCCceEEEeeccC-CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcE
Confidence            455568999999999999999   9999999999999999955 345668999999999999999999999999999999


Q ss_pred             EEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC--ceEEEeCCC-----eeEEEecCCCe
Q psy12911        101 KCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ--PIMTINLPE-----RCYCADVDYPL  172 (356)
Q Consensus       101 ~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~-----~~~~~~~~~~~  172 (356)
                      ++||++++++.. +.+|.+.|++++|+  +++++|++++.|+.|++||+.+++  ++..+....     ....+++++.+
T Consensus       271 riWd~~~~~~~~~l~~hs~~is~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~  348 (456)
T KOG0266|consen  271 RIWDVRTGECVRKLKGHSDGISGLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY  348 (456)
T ss_pred             EEEeccCCeEEEeeeccCCceEEEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence            999999999887 88999999999999  999999999999999999999998  456665443     34556677789


Q ss_pred             EEEEecCCeEEEEeCCCCccccccccCccc-ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee-c
Q psy12911        173 AVVGTAGRGIVLYQLEGKPQEFKKTESPLK-YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH-R  250 (356)
Q Consensus       173 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~-~  250 (356)
                      +++++.|+.+++||++.............. ..+.+...++.    +..+++|+.|+.|++|+....  ..+..+.+| .
T Consensus       349 ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~sg~~d~~v~~~~~~s~--~~~~~l~~h~~  422 (456)
T KOG0266|consen  349 LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG----GKLIYSGSEDGSVYVWDSSSG--GILQRLEGHSK  422 (456)
T ss_pred             EEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC----CCeEEEEeCCceEEEEeCCcc--chhhhhcCCCC
Confidence            999999999999999977543333321111 12222233444    889999999999999999875  667788888 5


Q ss_pred             CCCCCCCcccccceEEEEEeCCCCEEEEEc--CCCeEEEEEcC
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVG--SEGTFSFWDKD  291 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~--~dg~i~iwd~~  291 (356)
                      .           .+..++++|..+++++++  .|+.+++|...
T Consensus       423 ~-----------~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  423 A-----------AVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             C-----------ceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            5           799999999999999998  78999999754

>KOG0277|consensus

Probab=100.00  E-value=2.9e-34  Score=211.65  Aligned_cols=243  Identities=19%  Similarity=0.259  Sum_probs=207.6

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEEEEEcC
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~  106 (356)
                      -.+.+..++|+++.  .+.+++++.||+++|||+... ..+++.++.|...|.++.|++ +++.+++++.|++|++|+..
T Consensus        59 ~~D~LfdV~Wse~~--e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~  135 (311)
T KOG0277|consen   59 TEDGLFDVAWSENH--ENQVIAASGDGSLRLFDLTMP-SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN  135 (311)
T ss_pred             cccceeEeeecCCC--cceEEEEecCceEEEeccCCC-CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC
Confidence            35788999999987  588999999999999997653 456688999999999999998 56678888999999999998


Q ss_pred             CCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCC---CeEEEEecCCe
Q psy12911        107 SNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDY---PLAVVGTAGRG  181 (356)
Q Consensus       107 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~d~~  181 (356)
                      .++.+. +.+|..-|...+|+| ..++++++++.|+++++||++..-....+..|. .++++++..   ..+++|+.|+.
T Consensus       136 r~~Sv~Tf~gh~~~Iy~a~~sp-~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~  214 (311)
T KOG0277|consen  136 RPNSVQTFNGHNSCIYQAAFSP-HIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL  214 (311)
T ss_pred             CCcceEeecCCccEEEEEecCC-CCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce
Confidence            877766 889999999999997 677899999999999999999865545577776 788887754   58999999999


Q ss_pred             EEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccc
Q psy12911        182 IVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDI  261 (356)
Q Consensus       182 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (356)
                      |+.||++.-..++..+ ..|...|+.+.|+|..   ...|++++.|=+++||+..... ..+.+...|..          
T Consensus       215 vr~wDir~~r~pl~eL-~gh~~AVRkvk~Sph~---~~lLaSasYDmT~riw~~~~~d-s~~e~~~~HtE----------  279 (311)
T KOG0277|consen  215 VRGWDIRNLRTPLFEL-NGHGLAVRKVKFSPHH---ASLLASASYDMTVRIWDPERQD-SAIETVDHHTE----------  279 (311)
T ss_pred             EEEEehhhccccceee-cCCceEEEEEecCcch---hhHhhhccccceEEecccccch-hhhhhhhccce----------
Confidence            9999999987666555 5788999999999986   6789999999999999997543 45666667776          


Q ss_pred             cceEEEEEeCC-CCEEEEEcCCCeEEEEEc
Q psy12911        262 YAVNGIVFHPV-HGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       262 ~~i~~i~~sp~-~~~l~s~~~dg~i~iwd~  290 (356)
                       -+..+.||+. ..++|+++.|+.++||+.
T Consensus       280 -Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  280 -FVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             -EEeccccccccCceeeecccccceeeecc
Confidence             7889999984 589999999999999984

>KOG0295|consensus

Probab=100.00  E-value=5.6e-34  Score=220.27  Aligned_cols=248  Identities=17%  Similarity=0.197  Sum_probs=216.8

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      ..+....++||.+.|..++|+..|   ++||+++.|=.+++||.++. ....+.+.+|...|.+++|-|.|.+|++++.|
T Consensus       139 tg~~e~~LrGHt~sv~di~~~a~G---k~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD  214 (406)
T KOG0295|consen  139 TGELERSLRGHTDSVFDISFDASG---KYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD  214 (406)
T ss_pred             chhhhhhhhccccceeEEEEecCc---cEEEecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccc
Confidence            334466789999999999999999   99999999999999999873 45567888999999999999999999999999


Q ss_pred             CeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEecC----
Q psy12911         98 KTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCADVD----  169 (356)
Q Consensus        98 g~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~----  169 (356)
                      .+|+.|++.++-++. +.+|..-|..++.+  .||.++++++.|.+|++|-+.++++...+..+.   .++.+.+.    
T Consensus       215 ~tik~We~~tg~cv~t~~~h~ewvr~v~v~--~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~  292 (406)
T KOG0295|consen  215 NTIKAWECDTGYCVKTFPGHSEWVRMVRVN--QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYP  292 (406)
T ss_pred             cceeEEecccceeEEeccCchHhEEEEEec--CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCc
Confidence            999999999999887 88999999999999  999999999999999999999997666665544   33332221    


Q ss_pred             -----------CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        170 -----------YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       170 -----------~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                                 ++.+.+++.|++|++||+.++...+..  ..|...|..++|+|.    |++++++.+|+++++||++..
T Consensus       293 ~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL--~ghdnwVr~~af~p~----Gkyi~ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  293 SISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL--VGHDNWVRGVAFSPG----GKYILSCADDKTLRVWDLKNL  366 (406)
T ss_pred             chhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE--ecccceeeeeEEcCC----CeEEEEEecCCcEEEEEeccc
Confidence                       148899999999999999998654433  358899999999999    899999999999999999877


Q ss_pred             CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                        ++..++..|..           -+++++|+.+..++++|+-|.++++|.-
T Consensus       367 --~cmk~~~ah~h-----------fvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  367 --QCMKTLEAHEH-----------FVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             --eeeeccCCCcc-----------eeEEEecCCCCceEEeccccceeeeeec
Confidence              77888888887           8999999999999999999999999974

>KOG0268|consensus

Probab=100.00  E-value=1.2e-34  Score=224.01  Aligned_cols=273  Identities=15%  Similarity=0.206  Sum_probs=225.0

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      ..+.||.+.|.|++=+|..  ...+|+|+.||.|+|||+..  .....++..|.+.|..|++..  ..+++++.|.+|+.
T Consensus        60 ~~L~gHrdGV~~lakhp~~--ls~~aSGs~DG~VkiWnlsq--R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNK--LSTVASGSCDGEVKIWNLSQ--RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ  133 (433)
T ss_pred             hhccccccccchhhcCcch--hhhhhccccCceEEEEehhh--hhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence            3468999999999999986  36899999999999999987  666789999999999999986  67899999999999


Q ss_pred             EEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCC---CeEEEEec
Q psy12911        103 WDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDY---PLAVVGTA  178 (356)
Q Consensus       103 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~  178 (356)
                      |.++.. .+........+..+.-+  ..+..++|||+  .|-|||.....+++++.... .+.++.++.   ..|+++..
T Consensus       134 wk~~~~-p~~tilg~s~~~gIdh~--~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s  208 (433)
T KOG0268|consen  134 WKIDGP-PLHTILGKSVYLGIDHH--RKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS  208 (433)
T ss_pred             eeccCC-cceeeeccccccccccc--cccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc
Confidence            998764 55555556777888777  77788999885  59999999999999998665 355555554   47778889


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCc
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGV  258 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (356)
                      |+.|.+||++......+..   .......|+|+|.    ...+++|+.|..++.||++.-. .++....+|..       
T Consensus       209 DrsIvLyD~R~~~Pl~KVi---~~mRTN~IswnPe----afnF~~a~ED~nlY~~DmR~l~-~p~~v~~dhvs-------  273 (433)
T KOG0268|consen  209 DRSIVLYDLRQASPLKKVI---LTMRTNTICWNPE----AFNFVAANEDHNLYTYDMRNLS-RPLNVHKDHVS-------  273 (433)
T ss_pred             CCceEEEecccCCccceee---eeccccceecCcc----ccceeeccccccceehhhhhhc-ccchhhcccce-------
Confidence            9999999999886544433   2455688999997    7889999999999999997654 56778888887       


Q ss_pred             ccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC-CCccceEEEEECCCCCEEEEEeccC
Q psy12911        259 QDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE-AMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       259 ~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                          .|.+++|||.|+-+++|+.|.+|+||..+.+....... ..-..|.++.||.|.+|+++||.|.
T Consensus       274 ----AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~  337 (433)
T KOG0268|consen  274 ----AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG  337 (433)
T ss_pred             ----eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence                99999999999999999999999999998765433221 1134689999999999999998654

>KOG0278|consensus

Probab=100.00  E-value=4.1e-34  Score=210.53  Aligned_cols=279  Identities=16%  Similarity=0.170  Sum_probs=234.5

Q ss_pred             eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911         22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK  101 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  101 (356)
                      -.+..||+.+|-.++|+|-...+-+|++++.|+.-.+-+-+++  --+-++.+|.+.|++...+.+....++++.|-+.+
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--dwigtfeghkgavw~~~l~~na~~aasaaadftak   84 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK   84 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--CcEEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence            3567899999999999863322389999999999888887774  34478999999999999999988899999999999


Q ss_pred             EEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC-ceEEEeCCCe---eEEEecCCCeEEEEe
Q psy12911        102 CWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ-PIMTINLPER---CYCADVDYPLAVVGT  177 (356)
Q Consensus       102 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~  177 (356)
                      +||.-+|..+....|..-|.+++|+  .|.++|++|+.+..+||||++..+ +...+.++..   -..+......+++++
T Consensus        85 vw~a~tgdelhsf~hkhivk~~af~--~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa  162 (334)
T KOG0278|consen   85 VWDAVTGDELHSFEHKHIVKAVAFS--QDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA  162 (334)
T ss_pred             hhhhhhhhhhhhhhhhheeeeEEec--ccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence            9999999999999999999999999  999999999999999999998764 5566666553   334455566888889


Q ss_pred             cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCC
Q psy12911        178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG  257 (356)
Q Consensus       178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  257 (356)
                      .|++|++||.+++......   ..+.+++++.++++    +. +++-...+.|.+||.+..  ..+..++...       
T Consensus       163 dd~tVRLWD~rTgt~v~sL---~~~s~VtSlEvs~d----G~-ilTia~gssV~Fwdaksf--~~lKs~k~P~-------  225 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTEVQSL---EFNSPVTSLEVSQD----GR-ILTIAYGSSVKFWDAKSF--GLLKSYKMPC-------  225 (334)
T ss_pred             cCCceEEEEeccCcEEEEE---ecCCCCcceeeccC----CC-EEEEecCceeEEeccccc--cceeeccCcc-------
Confidence            9999999999998643332   35678999999999    44 556667778999998765  4444444433       


Q ss_pred             cccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC-CCCccceEEEEECCCCCEEEEEeccCC
Q psy12911        258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS-EAMDMSISTCALNHNGQIFAYAVSYDW  326 (356)
Q Consensus       258 ~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~s~~d~  326 (356)
                           .|.+..++|+..++++|++|+.++.||..+++.+..+ ++|.++|.++.|+|||...|+||.|+-
T Consensus       226 -----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT  290 (334)
T KOG0278|consen  226 -----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT  290 (334)
T ss_pred             -----ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence                 5999999999999999999999999999999999886 899999999999999999999998773

>KOG0277|consensus

Probab=100.00  E-value=4.4e-33  Score=205.45  Aligned_cols=279  Identities=20%  Similarity=0.300  Sum_probs=220.5

Q ss_pred             eEEEecCCCCCceEEEEEe-------CCCeEEEEeccC-CCceeeeeeccCCcceeEEEEccC-CCeEEEEcCCCeEEEE
Q psy12911         33 SCMAFSPSTLPQYFLIAGS-------WDNNVRCWEVEP-NGKTIPKSMQGMSEPVLDVAWIDD-GTKVFMAGCDKTVKCW  103 (356)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~-------~dg~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw  103 (356)
                      .++.|||--  +++||++.       ..|.+.|.++.. .+......+ .-...+..++|+++ .+.+++++.||++++|
T Consensus        12 ysvqfSPf~--~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~   88 (311)
T KOG0277|consen   12 YSVQFSPFV--ENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLF   88 (311)
T ss_pred             ceeEecccc--cchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEe
Confidence            578899965  35565553       478999999963 233332333 35778999999994 4578888999999999


Q ss_pred             EcCCC-cee-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEE-EecC---CCeEEEEe
Q psy12911        104 DLASN-QSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYC-ADVD---YPLAVVGT  177 (356)
Q Consensus       104 d~~~~-~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~  177 (356)
                      |+... .++ .+++|...|.++.|++ .+++.+++++.|++|++|+...++.+.++.++..++. ..+.   ++.+++++
T Consensus        89 d~~~~s~Pi~~~kEH~~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen   89 DLTMPSKPIHKFKEHKREVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             ccCCCCcchhHHHhhhhheEEecccc-ccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence            96533 233 3889999999999995 5677888899999999999999999999999886443 3332   35889999


Q ss_pred             cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCC
Q psy12911        178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG  257 (356)
Q Consensus       178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  257 (356)
                      .|+++++||++.......  ...|..++.|..|+...   ...+++|+.|+.|+.||++.-. .++.++.+|.-      
T Consensus       168 gd~~l~lwdvr~~gk~~~--i~ah~~Eil~cdw~ky~---~~vl~Tg~vd~~vr~wDir~~r-~pl~eL~gh~~------  235 (311)
T KOG0277|consen  168 GDGTLRLWDVRSPGKFMS--IEAHNSEILCCDWSKYN---HNVLATGGVDNLVRGWDIRNLR-TPLFELNGHGL------  235 (311)
T ss_pred             CCceEEEEEecCCCceeE--EEeccceeEeecccccC---CcEEEecCCCceEEEEehhhcc-ccceeecCCce------
Confidence            999999999987644333  33466788999888753   6799999999999999998765 67888888887      


Q ss_pred             cccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcc-eecCCCCCCccceEEEEECCC-CCEEEEEeccCCcCCCccCC
Q psy12911        258 VQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDAR-TKLKPSEAMDMSISTCALNHN-GQIFAYAVSYDWSKGHEHNN  334 (356)
Q Consensus       258 ~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~~~s~~d~~~~~~~~~  334 (356)
                           .|..++|||.. .+||+++.|-++||||...+ ..+.+..-|+.-|..+.||+- +.++|+++   |+....+|+
T Consensus       236 -----AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g---WDe~l~Vw~  307 (311)
T KOG0277|consen  236 -----AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG---WDELLYVWN  307 (311)
T ss_pred             -----EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc---cccceeeec
Confidence                 99999999976 78999999999999998854 456677788999999999974 56677665   777777777


Q ss_pred             C
Q psy12911        335 P  335 (356)
Q Consensus       335 ~  335 (356)
                      |
T Consensus       308 p  308 (311)
T KOG0277|consen  308 P  308 (311)
T ss_pred             c
Confidence            6

>KOG1407|consensus

Probab=100.00  E-value=1.9e-33  Score=208.10  Aligned_cols=235  Identities=25%  Similarity=0.298  Sum_probs=206.4

Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee---ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEE
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ---VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW  146 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw  146 (356)
                      +.+++|...|.+++|+.+|..|++|+.|+++.+|+++..+...   ..+|.+.|-.++|+| +...++++++.|.+|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~-~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDP-KHPDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCC-CCCcceEEecCCceEEEE
Confidence            5677899999999999999999999999999999998876543   578999999999997 677899999999999999


Q ss_pred             eCCCCCceEEEeCCC--eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe
Q psy12911        147 DLRTPQPIMTINLPE--RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG  224 (356)
Q Consensus       147 d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  224 (356)
                      |++++++...+....  ...++++.+.+++++..|..|.+.|.++.....   ..+....+..++|+.+    +.+++..
T Consensus        93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~---~~~~~~e~ne~~w~~~----nd~Fflt  165 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN---EEQFKFEVNEISWNNS----NDLFFLT  165 (313)
T ss_pred             EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee---hhcccceeeeeeecCC----CCEEEEe
Confidence            999999998887544  466788888999999999999999999864322   2244567788888866    6788888


Q ss_pred             ecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCcc
Q psy12911        225 SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDM  304 (356)
Q Consensus       225 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  304 (356)
                      ...|+|.|..+..  .+++.++++|..           ...||.|+|+|++||+|+.|-.+.+||+...-+++.+..+.-
T Consensus       166 ~GlG~v~ILsyps--Lkpv~si~AH~s-----------nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw  232 (313)
T KOG1407|consen  166 NGLGCVEILSYPS--LKPVQSIKAHPS-----------NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW  232 (313)
T ss_pred             cCCceEEEEeccc--cccccccccCCc-----------ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC
Confidence            8889999988864  488999999987           788999999999999999999999999999889999999999


Q ss_pred             ceEEEEECCCCCEEEEEeccC
Q psy12911        305 SISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       305 ~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +|+.+.||.||++||+||.|-
T Consensus       233 pVRTlSFS~dg~~lASaSEDh  253 (313)
T KOG1407|consen  233 PVRTLSFSHDGRMLASASEDH  253 (313)
T ss_pred             ceEEEEeccCcceeeccCccc
Confidence            999999999999999999865

>KOG0296|consensus

Probab=100.00  E-value=1.8e-32  Score=212.03  Aligned_cols=245  Identities=19%  Similarity=0.335  Sum_probs=204.5

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      -.....+.+|++.|+|+.|+.+|   .+||||+.+|.|+||+..++...  ..+...-..+.=+.|+|.+..|++|+.||
T Consensus        96 ge~~~eltgHKDSVt~~~Fshdg---tlLATGdmsG~v~v~~~stg~~~--~~~~~e~~dieWl~WHp~a~illAG~~DG  170 (399)
T KOG0296|consen   96 GEFAGELTGHKDSVTCCSFSHDG---TLLATGDMSGKVLVFKVSTGGEQ--WKLDQEVEDIEWLKWHPRAHILLAGSTDG  170 (399)
T ss_pred             CcceeEecCCCCceEEEEEccCc---eEEEecCCCccEEEEEcccCceE--EEeecccCceEEEEecccccEEEeecCCC
Confidence            34566788999999999999999   99999999999999999984332  34444556788899999999999999999


Q ss_pred             eEEEEEcCCCc-eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----------------
Q psy12911         99 TVKCWDLASNQ-SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----------------  161 (356)
Q Consensus        99 ~i~vwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------  161 (356)
                      .+.+|.+.++. +..+.+|..++++-.|.  |+|+.++++..||+|++||+.+++++..+....                
T Consensus       171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~--pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~  248 (399)
T KOG0296|consen  171 SVWMWQIPSQALCKVMSGHNSPCTCGEFI--PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTL  248 (399)
T ss_pred             cEEEEECCCcceeeEecCCCCCccccccc--CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccccee
Confidence            99999999854 44489999999999999  999999999999999999999999888776210                


Q ss_pred             -----------------e-eEEEe-----------------------cCCCeEEEEecCCeEEEEeCCCCccccccccCc
Q psy12911        162 -----------------R-CYCAD-----------------------VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESP  200 (356)
Q Consensus       162 -----------------~-~~~~~-----------------------~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  200 (356)
                                       . +.+..                       ..-++.++|+-||+|.|||+.....   +....
T Consensus       249 ~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~---R~~c~  325 (399)
T KOG0296|consen  249 TKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL---RHICE  325 (399)
T ss_pred             EeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh---heecc
Confidence                             0 01111                       0012457888999999999987642   22335


Q ss_pred             ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        201 LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       201 ~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                      |...|..+.|.+.     .++++++.+|.|+.||.+.+  +.++++.+|..           .|.+++++|+++++++++
T Consensus       326 he~~V~~l~w~~t-----~~l~t~c~~g~v~~wDaRtG--~l~~~y~GH~~-----------~Il~f~ls~~~~~vvT~s  387 (399)
T KOG0296|consen  326 HEDGVTKLKWLNT-----DYLLTACANGKVRQWDARTG--QLKFTYTGHQM-----------GILDFALSPQKRLVVTVS  387 (399)
T ss_pred             CCCceEEEEEcCc-----chheeeccCceEEeeecccc--ceEEEEecCch-----------heeEEEEcCCCcEEEEec
Confidence            7778999999885     58999999999999999887  78999999998           999999999999999999


Q ss_pred             CCCeEEEEEcC
Q psy12911        281 SEGTFSFWDKD  291 (356)
Q Consensus       281 ~dg~i~iwd~~  291 (356)
                      .|++.+||+..
T Consensus       388 ~D~~a~VF~v~  398 (399)
T KOG0296|consen  388 DDNTALVFEVP  398 (399)
T ss_pred             CCCeEEEEecC
Confidence            99999999864

>KOG0278|consensus

Probab=100.00  E-value=3.9e-34  Score=210.62  Aligned_cols=250  Identities=14%  Similarity=0.258  Sum_probs=211.2

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      -.=+-++.||++.|.+...+.+.   ...|+++.|-+.+|||.-++. .+ ..+. |...|.+++|+.|.++|++|+.+.
T Consensus        49 gdwigtfeghkgavw~~~l~~na---~~aasaaadftakvw~a~tgd-el-hsf~-hkhivk~~af~~ds~~lltgg~ek  122 (334)
T KOG0278|consen   49 GDWIGTFEGHKGAVWSATLNKNA---TRAASAAADFTAKVWDAVTGD-EL-HSFE-HKHIVKAVAFSQDSNYLLTGGQEK  122 (334)
T ss_pred             CCcEEeeeccCcceeeeecCchh---hhhhhhcccchhhhhhhhhhh-hh-hhhh-hhheeeeEEecccchhhhccchHH
Confidence            34567899999999999999998   889999999999999998833 32 4554 899999999999999999999999


Q ss_pred             eEEEEEcCCCce--eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCC-eEEE
Q psy12911         99 TVKCWDLASNQS--MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYP-LAVV  175 (356)
Q Consensus        99 ~i~vwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  175 (356)
                      .++|||++..+.  ..+.+|.+.|..+.|.  ...+.|++++.|++||+||.+++..++++..+..+.++....+ .+++
T Consensus       123 llrvfdln~p~App~E~~ghtg~Ir~v~wc--~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilT  200 (334)
T KOG0278|consen  123 LLRVFDLNRPKAPPKEISGHTGGIRTVLWC--HEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILT  200 (334)
T ss_pred             HhhhhhccCCCCCchhhcCCCCcceeEEEe--ccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEE
Confidence            999999987653  3488999999999999  7778899999999999999999999999998887777666553 6677


Q ss_pred             EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee-eeecCCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF-KCHRSNGG  254 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~-~~~~~~~~  254 (356)
                      ....+.|.+||..+-.....   ......|.+.+.+|+    ...+++|+.|..++.||+.++  ..+..+ ++|.+   
T Consensus       201 ia~gssV~Fwdaksf~~lKs---~k~P~nV~SASL~P~----k~~fVaGged~~~~kfDy~Tg--eEi~~~nkgh~g---  268 (334)
T KOG0278|consen  201 IAYGSSVKFWDAKSFGLLKS---YKMPCNVESASLHPK----KEFFVAGGEDFKVYKFDYNTG--EEIGSYNKGHFG---  268 (334)
T ss_pred             EecCceeEEeccccccceee---ccCccccccccccCC----CceEEecCcceEEEEEeccCC--ceeeecccCCCC---
Confidence            77789999999987543221   134677899999999    678999999999999999877  444443 67776   


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceec
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKL  296 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  296 (356)
                              +|.|+.|+|+|...|+|++||+|++|.+..++..
T Consensus       269 --------pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  269 --------PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             --------ceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence                    9999999999999999999999999998766543

>KOG0310|consensus

Probab=100.00  E-value=2.1e-32  Score=219.23  Aligned_cols=271  Identities=17%  Similarity=0.230  Sum_probs=222.5

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  108 (356)
                      .+.|.+++|+|..  +.-+|+.+ .-.+.||+..+  ....+.+......|.+++|..||++|++|...|.|+|||+.+.
T Consensus        26 ~~~vssl~fsp~~--P~d~aVt~-S~rvqly~~~~--~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   26 HNSVSSLCFSPKH--PYDFAVTS-SVRVQLYSSVT--RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             cCcceeEecCCCC--CCceEEec-ccEEEEEecch--hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence            3589999999976  45566665 35799999887  4455667777899999999999999999999999999997765


Q ss_pred             ceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEE--EecCC-CeEEEEecCCeEE
Q psy12911        109 QSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYC--ADVDY-PLAVVGTAGRGIV  183 (356)
Q Consensus       109 ~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~--~~~~~-~~~~~~~~d~~i~  183 (356)
                      ..++ +.+|+.++..+.|+| .++..+++|+.|+.+++||+.+......+.+|.. +-|  +.+.. ..+++|+.||.|+
T Consensus       101 ~iLR~~~ah~apv~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr  179 (487)
T KOG0310|consen  101 VILRQLYAHQAPVHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR  179 (487)
T ss_pred             HHHHHHhhccCceeEEEecc-cCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence            5555 889999999999995 6777888999999999999999886557777763 333  33333 3899999999999


Q ss_pred             EEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccc
Q psy12911        184 LYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYA  263 (356)
Q Consensus       184 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      +||++....  ......|..+|..+.+.|.    +..+++++. ..+++||+-.+. +.+..+..|..           .
T Consensus       180 l~DtR~~~~--~v~elnhg~pVe~vl~lps----gs~iasAgG-n~vkVWDl~~G~-qll~~~~~H~K-----------t  240 (487)
T KOG0310|consen  180 LWDTRSLTS--RVVELNHGCPVESVLALPS----GSLIASAGG-NSVKVWDLTTGG-QLLTSMFNHNK-----------T  240 (487)
T ss_pred             EEEeccCCc--eeEEecCCCceeeEEEcCC----CCEEEEcCC-CeEEEEEecCCc-eehhhhhcccc-----------e
Confidence            999998753  3333458899999999999    677776654 569999998553 44555555666           8


Q ss_pred             eEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        264 VNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       264 i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      |+|+++..++..|++|+-|+.|++||+.+.+.+..+. ..++|.+++.+||++.++.|.+++
T Consensus       241 VTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  241 VTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNG  301 (487)
T ss_pred             EEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccc
Confidence            9999999999999999999999999999888888886 688999999999999999999887

>KOG0316|consensus

Probab=100.00  E-value=1.3e-32  Score=200.84  Aligned_cols=234  Identities=15%  Similarity=0.183  Sum_probs=203.9

Q ss_pred             eeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEe
Q psy12911         69 PKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD  147 (356)
Q Consensus        69 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd  147 (356)
                      ...+..+.++|.++.|+-+|+|.++++.|.+|++|+...+.+++ ..+|...|..++.+  .|...+++|+.|..|.+||
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s--~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALS--SDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccc--ccccccccCCCCceEEEEE
Confidence            46678899999999999999999999999999999999999988 78899999999999  9999999999999999999


Q ss_pred             CCCCCceEEEeCCCe-eEEEec--CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe
Q psy12911        148 LRTPQPIMTINLPER-CYCADV--DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG  224 (356)
Q Consensus       148 ~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  224 (356)
                      +.+|+.++.+.+|.. +-.+.+  ....+++|+-|.++++||.+........+.......|.++.+...      .+++|
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h------eIvaG  161 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH------EIVAG  161 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc------EEEee
Confidence            999999999998873 444444  445899999999999999999876655555566778888887644      89999


Q ss_pred             ecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCcc
Q psy12911        225 SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDM  304 (356)
Q Consensus       225 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  304 (356)
                      +.||+++.||++.++  .....-+|             +|+++.|++|++..++++.|+++++.|-++|++++.+++|.+
T Consensus       162 S~DGtvRtydiR~G~--l~sDy~g~-------------pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn  226 (307)
T KOG0316|consen  162 SVDGTVRTYDIRKGT--LSSDYFGH-------------PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN  226 (307)
T ss_pred             ccCCcEEEEEeecce--eehhhcCC-------------cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence            999999999998773  33334444             899999999999999999999999999999999999999976


Q ss_pred             c--eEEEEECCCCCEEEEEeccC
Q psy12911        305 S--ISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       305 ~--v~~~~~s~~~~~l~~~s~~d  325 (356)
                      .  =..++++....++++||.|+
T Consensus       227 ~eykldc~l~qsdthV~sgSEDG  249 (307)
T KOG0316|consen  227 MEYKLDCCLNQSDTHVFSGSEDG  249 (307)
T ss_pred             ceeeeeeeecccceeEEeccCCc
Confidence            3  35678888899999999887

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=8.7e-32  Score=231.25  Aligned_cols=232  Identities=16%  Similarity=0.149  Sum_probs=177.3

Q ss_pred             EEeCCCCCCeeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCc-----eeeeeeccCCcceeEEEEccCC-CeEEEEc
Q psy12911         23 EVVSPPEDSISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGK-----TIPKSMQGMSEPVLDVAWIDDG-TKVFMAG   95 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~   95 (356)
                      ..+.+|.+.|++++|+| ++   ++|++|+.|++|+|||+.+.+.     .....+.+|...|.+++|+|++ ++|++++
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~---~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs  145 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDP---QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG  145 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCC---CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe
Confidence            35789999999999999 66   8999999999999999976431     2446788999999999999975 6899999


Q ss_pred             CCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEE
Q psy12911         96 CDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAV  174 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (356)
                      .|++|+|||+++++... +..|...|.+++|+  +++.+|++++.|+.|++||+++++.+..+..+..            
T Consensus       146 ~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s--pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~------------  211 (493)
T PTZ00421        146 ADMVVNVWDVERGKAVEVIKCHSDQITSLEWN--LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS------------  211 (493)
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCCceEEEEEE--CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC------------
Confidence            99999999999988765 67799999999999  9999999999999999999999888777665431            


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee----cCCeEEEEEeCCCCCCCcceeeeec
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS----VEGRVAIQYVNPANPKDNFTFKCHR  250 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~dg~i~i~~~~~~~~~~~~~~~~~~  250 (356)
                                                  .....+.|.++    ...+++++    .|+.|++||++... .+......+.
T Consensus       212 ----------------------------~~~~~~~w~~~----~~~ivt~G~s~s~Dr~VklWDlr~~~-~p~~~~~~d~  258 (493)
T PTZ00421        212 ----------------------------AKSQRCLWAKR----KDLIITLGCSKSQQRQIMLWDTRKMA-SPYSTVDLDQ  258 (493)
T ss_pred             ----------------------------CcceEEEEcCC----CCeEEEEecCCCCCCeEEEEeCCCCC-CceeEeccCC
Confidence                                        11123344444    33444433    46788888886542 2222222221


Q ss_pred             CCCCCCCcccccceEEEEEeCCCCEEEEEc-CCCeEEEEEcCcceecCCCCC-CccceEEEEECCC
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWDKDARTKLKPSEA-MDMSISTCALNHN  314 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~  314 (356)
                      .          ..+....|++++++|++++ .|+.|++||+.+++.+..... +..++..++|.|.
T Consensus       259 ~----------~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        259 S----------SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             C----------CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            1          1466678999999998887 599999999998887665443 3456777777774

>KOG0285|consensus

Probab=100.00  E-value=4.8e-33  Score=214.86  Aligned_cols=234  Identities=19%  Similarity=0.252  Sum_probs=207.2

Q ss_pred             eeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEE
Q psy12911         67 TIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF  145 (356)
Q Consensus        67 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i  145 (356)
                      .+.+.+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.++++.. +.+|-..|..++++  +...+++++++|+.|+.
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS--~rHpYlFs~gedk~VKC  219 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVS--KRHPYLFSAGEDKQVKC  219 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeec--ccCceEEEecCCCeeEE
Confidence            3445678999999999999999999999999999999999999876 78899999999999  88999999999999999


Q ss_pred             EeCCCCCceEEEeCCC-eeEEEecC--CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEE
Q psy12911        146 WDLRTPQPIMTINLPE-RCYCADVD--YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYG  222 (356)
Q Consensus       146 wd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  222 (356)
                      ||++..+.++.+.+|- .+++++..  -+.+++++.|.++++||+++.....  ....|...|..+.+.|.    ...++
T Consensus       220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~--~l~GH~~~V~~V~~~~~----dpqvi  293 (460)
T KOG0285|consen  220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH--VLSGHTNPVASVMCQPT----DPQVI  293 (460)
T ss_pred             EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE--EecCCCCcceeEEeecC----CCceE
Confidence            9999999999999886 46666665  5799999999999999999975433  33468899999999987    56799


Q ss_pred             EeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC
Q psy12911        223 LGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM  302 (356)
Q Consensus       223 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  302 (356)
                      +|+.|++|++||+..+  +...++..|..           .+.+++.+|....+|+++.|. |+-|++..|..++.+.+|
T Consensus       294 t~S~D~tvrlWDl~ag--kt~~tlt~hkk-----------svral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh  359 (460)
T KOG0285|consen  294 TGSHDSTVRLWDLRAG--KTMITLTHHKK-----------SVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGH  359 (460)
T ss_pred             EecCCceEEEeeeccC--ceeEeeecccc-----------eeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccc
Confidence            9999999999999877  67788888887           899999999999999999884 999999999999999999


Q ss_pred             ccceEEEEECCCCCEEEEEec
Q psy12911        303 DMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       303 ~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      ..-|++++...||- +++|+.
T Consensus       360 ~~iintl~~nsD~v-~~~G~d  379 (460)
T KOG0285|consen  360 NAIINTLSVNSDGV-LVSGGD  379 (460)
T ss_pred             cceeeeeeeccCce-EEEcCC
Confidence            99999999988874 555554

>KOG0293|consensus

Probab=100.00  E-value=9.3e-33  Score=217.02  Aligned_cols=252  Identities=19%  Similarity=0.224  Sum_probs=204.1

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      ++...++.+|..+|..+.||||.   ++|++++.|..+.+||+.++. .....-.+|...+.+++|.|||..+++|+.|+
T Consensus       259 ~kl~~tlvgh~~~V~yi~wSPDd---ryLlaCg~~e~~~lwDv~tgd-~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr  334 (519)
T KOG0293|consen  259 FKLKKTLVGHSQPVSYIMWSPDD---RYLLACGFDEVLSLWDVDTGD-LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR  334 (519)
T ss_pred             eeeeeeeecccCceEEEEECCCC---CeEEecCchHheeeccCCcch-hhhhcccCcCCCcceeEEccCCceeEecCCCC
Confidence            56678899999999999999999   999999999999999999943 33233334668999999999999999999999


Q ss_pred             eEEEEEcCCCceeeeccc-CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe--eEEEecCCCeEEE
Q psy12911         99 TVKCWDLASNQSMQVAQH-DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER--CYCADVDYPLAVV  175 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  175 (356)
                      ++..||+.....-...+. ...|.+++..  +||+++++.+.|..|++++.++......+..+..  .++++-++.++++
T Consensus       335 ~i~~wdlDgn~~~~W~gvr~~~v~dlait--~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv  412 (519)
T KOG0293|consen  335 TIIMWDLDGNILGNWEGVRDPKVHDLAIT--YDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV  412 (519)
T ss_pred             cEEEecCCcchhhcccccccceeEEEEEc--CCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE
Confidence            999999987765554443 3569999999  9999999999999999999988766655555554  4556666779999


Q ss_pred             EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      .-.+..|++||++......+........-+-.-+|--.   +...+++|+.|+.|+||+...+  +++.++.+|..    
T Consensus       413 nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~---~~~fiaSGSED~kvyIWhr~sg--kll~~LsGHs~----  483 (519)
T KOG0293|consen  413 NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG---NDKFIASGSEDSKVYIWHRISG--KLLAVLSGHSK----  483 (519)
T ss_pred             EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC---CcceEEecCCCceEEEEEccCC--ceeEeecCCcc----
Confidence            99999999999996654444443222233333333222   2578999999999999999877  78999999998    


Q ss_pred             CCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCc
Q psy12911        256 GGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~  292 (356)
                             .|++++|+|.. .++|++++||+||||-...
T Consensus       484 -------~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  484 -------TVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             -------eeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence                   99999999976 7899999999999998764

>KOG0292|consensus

Probab=100.00  E-value=8.4e-32  Score=230.36  Aligned_cols=286  Identities=13%  Similarity=0.178  Sum_probs=226.9

Q ss_pred             CCCCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEE
Q psy12911         13 TSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVF   92 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   92 (356)
                      .++..-...+..+..|.++|..++|+|.+   .++++|+.|-.|+||+..+  ..+..++.+|-.-|..+.|++.-.+|+
T Consensus        35 lWDYRM~tli~rFdeHdGpVRgv~FH~~q---plFVSGGDDykIkVWnYk~--rrclftL~GHlDYVRt~~FHheyPWIl  109 (1202)
T KOG0292|consen   35 LWDYRMGTLIDRFDEHDGPVRGVDFHPTQ---PLFVSGGDDYKIKVWNYKT--RRCLFTLLGHLDYVRTVFFHHEYPWIL  109 (1202)
T ss_pred             eehhhhhhHHhhhhccCCccceeeecCCC---CeEEecCCccEEEEEeccc--ceehhhhccccceeEEeeccCCCceEE
Confidence            33444445566688999999999999999   9999999999999999988  667789999999999999999999999


Q ss_pred             EEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC-------------------
Q psy12911         93 MAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ-------------------  152 (356)
Q Consensus        93 ~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------------  152 (356)
                      ++|.|.+|+||+..+++++. +.+|...|.|.+|+  |...++++++-|.+||+||+..-+                   
T Consensus       110 SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh--ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~  187 (1202)
T KOG0292|consen  110 SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH--PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN  187 (1202)
T ss_pred             EccCCCeEEEEeccCCceEEEEecCceEEEeeccC--CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence            99999999999999999998 89999999999999  888899999999999999985211                   


Q ss_pred             ----------ceEEEeCCCee---EEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCC
Q psy12911        153 ----------PIMTINLPERC---YCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPA  219 (356)
Q Consensus       153 ----------~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  219 (356)
                                ....+++|.+.   .++.+.-+.+++|+.|..|++|.+...+.-.......|...|.++-|+|.    .+
T Consensus       188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~----q~  263 (1202)
T KOG0292|consen  188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH----QD  263 (1202)
T ss_pred             hhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCc----cc
Confidence                      01223444432   23333447999999999999999987665444555678899999999998    67


Q ss_pred             eEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC--------
Q psy12911        220 GYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD--------  291 (356)
Q Consensus       220 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~--------  291 (356)
                      .+++.+.|+.|+|||+...  ..+++++....           ..+.++-+|..+++|+|-+.| +.||.++        
T Consensus       264 lIlSnsEDksirVwDm~kR--t~v~tfrrend-----------RFW~laahP~lNLfAAgHDsG-m~VFkleRErpa~~v  329 (1202)
T KOG0292|consen  264 LILSNSEDKSIRVWDMTKR--TSVQTFRREND-----------RFWILAAHPELNLFAAGHDSG-MIVFKLERERPAYAV  329 (1202)
T ss_pred             eeEecCCCccEEEEecccc--cceeeeeccCC-----------eEEEEEecCCcceeeeecCCc-eEEEEEcccCceEEE
Confidence            9999999999999999887  55777765555           789999999999888885444 4455543        


Q ss_pred             -------------------cce--ecCCCCCC---ccceEEEEECCCCCEEEEEec
Q psy12911        292 -------------------ART--KLKPSEAM---DMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       292 -------------------~~~--~~~~~~~~---~~~v~~~~~s~~~~~l~~~s~  323 (356)
                                         +.+  .+..++..   -.++.++.++|....+..++.
T Consensus       330 ~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~  385 (1202)
T KOG0292|consen  330 NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSN  385 (1202)
T ss_pred             cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEec
Confidence                               211  11112211   256788999998777777654

>KOG0313|consensus

Probab=100.00  E-value=1.2e-31  Score=208.56  Aligned_cols=253  Identities=18%  Similarity=0.299  Sum_probs=210.5

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCcee--eeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTI--PKSMQGMSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      +...++.||.++|.+++|.-.......+++++.|.++++|..+.+....  .+...||...|.++...++|..+++|+.|
T Consensus       135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D  214 (423)
T KOG0313|consen  135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD  214 (423)
T ss_pred             ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccc
Confidence            5667789999999988886544122469999999999999998754322  23345999999999999999999999999


Q ss_pred             CeEEEEEcCCC-------------------------c-eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC
Q psy12911         98 KTVKCWDLASN-------------------------Q-SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP  151 (356)
Q Consensus        98 g~i~vwd~~~~-------------------------~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  151 (356)
                      .+|.+|+....                         . .+.+.+|.++|.++.|+  + ...+++++.|.+|+.||+.++
T Consensus       215 ~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~--d-~~v~yS~SwDHTIk~WDletg  291 (423)
T KOG0313|consen  215 TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS--D-ATVIYSVSWDHTIKVWDLETG  291 (423)
T ss_pred             ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc--C-CCceEeecccceEEEEEeecc
Confidence            99999993221                         0 12367899999999996  4 678999999999999999999


Q ss_pred             CceEEEeCCCeeEEEecCC--CeEEEEecCCeEEEEeCCCCcc-ccccccCcccccceEEEeecCCCCCCCeEEEeecCC
Q psy12911        152 QPIMTINLPERCYCADVDY--PLAVVGTAGRGIVLYQLEGKPQ-EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG  228 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg  228 (356)
                      ..+.++..+....+++..+  .++++|+.|..|++||.+++.. ........|..-|.++.|+|..   ...|++++.|+
T Consensus       292 ~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~---~~~~~S~S~D~  368 (423)
T KOG0313|consen  292 GLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN---EFQLVSGSYDN  368 (423)
T ss_pred             cceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC---ceEEEEEecCC
Confidence            9999999888777776655  6899999999999999998753 3334445788899999999985   67899999999


Q ss_pred             eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        229 RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       229 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      ++++||++... .+++.+.+|..           .|.++.|. ++.++++|+.|.+|+|+.-.
T Consensus       369 t~klWDvRS~k-~plydI~~h~D-----------Kvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  369 TVKLWDVRSTK-APLYDIAGHND-----------KVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             eEEEEEeccCC-CcceeeccCCc-----------eEEEEecc-CCceEEeccCcceEEEeccc
Confidence            99999998763 48999999988           89999997 56799999999999998743

>KOG0772|consensus

Probab=100.00  E-value=5.3e-32  Score=218.50  Aligned_cols=290  Identities=15%  Similarity=0.195  Sum_probs=228.4

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCcee--eeee-ccCCcceeEEEEccCCCeEEEE
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTI--PKSM-QGMSEPVLDVAWIDDGTKVFMA   94 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~~-~~~~~~v~~~~~s~~~~~l~~~   94 (356)
                      |...-..+++|+..|.++++.|.|   ..|++|+.|-.|++||........  .+.+ ......|.+++|++.|..|++.
T Consensus       156 P~shEi~l~hgtk~Vsal~~Dp~G---aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv  232 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVSALAVDPSG---ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV  232 (641)
T ss_pred             CccceEeccCCceEEEEeeecCCC---ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE
Confidence            334445678899999999999999   999999999999999997643221  1222 3455689999999999999999


Q ss_pred             cCCCeEEEEEcCCCceee-------------ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC-ceEEEeC-
Q psy12911         95 GCDKTVKCWDLASNQSMQ-------------VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ-PIMTINL-  159 (356)
Q Consensus        95 ~~dg~i~vwd~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~-  159 (356)
                      +...+++|+|-...+...             ..+|...+++.+|+| .+...+++++.||++||||+...+ .++.+.. 
T Consensus       233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP-~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k  311 (641)
T KOG0772|consen  233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHP-DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK  311 (641)
T ss_pred             ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeecccccc-CcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence            888999999977654332             457999999999996 455679999999999999998754 3333331 


Q ss_pred             -------CCeeEEEecCCCeEEEEecCCeEEEEeCCCCcc-ccccccCcccc--cceEEEeecCCCCCCCeEEEeecCCe
Q psy12911        160 -------PERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQ-EFKKTESPLKY--QNRCIAIFRDKKKQPAGYGLGSVEGR  229 (356)
Q Consensus       160 -------~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~dg~  229 (356)
                             +.....++.++..+++|+.||.|.+|+..+... +...+...|..  .|+|++|+++    +++|++-+.|+.
T Consensus       312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d----g~~LlSRg~D~t  387 (641)
T KOG0772|consen  312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD----GNYLLSRGFDDT  387 (641)
T ss_pred             cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc----cchhhhccCCCc
Confidence                   113455677788999999999999999866532 23333444554  8999999999    899999999999


Q ss_pred             EEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC------CCeEEEEEcCcceecCCCCCCc
Q psy12911        230 VAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS------EGTFSFWDKDARTKLKPSEAMD  303 (356)
Q Consensus       230 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~  303 (356)
                      +++||++... +++.+..+-..         .++-+.++|||+.++|++|..      .|++.+||..+-+.+.++.-..
T Consensus       388 LKvWDLrq~k-kpL~~~tgL~t---------~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~  457 (641)
T KOG0772|consen  388 LKVWDLRQFK-KPLNVRTGLPT---------PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST  457 (641)
T ss_pred             eeeeeccccc-cchhhhcCCCc---------cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC
Confidence            9999998764 45555444322         236778999999999999864      5789999999999888888778


Q ss_pred             cceEEEEECCCCCEEEEEeccC
Q psy12911        304 MSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       304 ~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ..|..+.|+|.=+.|..|++|+
T Consensus       458 aSvv~~~WhpkLNQi~~gsgdG  479 (641)
T KOG0772|consen  458 ASVVRCLWHPKLNQIFAGSGDG  479 (641)
T ss_pred             ceEEEEeecchhhheeeecCCC
Confidence            8999999999999999999886

>KOG0282|consensus

Probab=100.00  E-value=1.4e-32  Score=219.97  Aligned_cols=247  Identities=19%  Similarity=0.323  Sum_probs=209.0

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCC-CeEEEEcC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG-TKVFMAGC   96 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~   96 (356)
                      ..+.++++.+|..+|..++|+++|   ..+++++.|+.|++||++++ ... ..+. ....++|+.|.|++ +.+++|+.
T Consensus       247 ~~~~lrtf~gH~k~Vrd~~~s~~g---~~fLS~sfD~~lKlwDtETG-~~~-~~f~-~~~~~~cvkf~pd~~n~fl~G~s  320 (503)
T KOG0282|consen  247 DRRCLRTFKGHRKPVRDASFNNCG---TSFLSASFDRFLKLWDTETG-QVL-SRFH-LDKVPTCVKFHPDNQNIFLVGGS  320 (503)
T ss_pred             CcceehhhhcchhhhhhhhccccC---Ceeeeeecceeeeeeccccc-eEE-EEEe-cCCCceeeecCCCCCcEEEEecC
Confidence            456788899999999999999999   99999999999999999993 332 4443 45678999999988 78899999


Q ss_pred             CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----eeEEEecCCC
Q psy12911         97 DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----RCYCADVDYP  171 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~  171 (356)
                      |+.|+.||+++++.++ ...|-+.|..+.|-  +++..+++.++|++++||+.+.+..++.+..+.    .++.+.+.++
T Consensus       321 d~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~  398 (503)
T KOG0282|consen  321 DKKIRQWDIRSGKVVQEYDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK  398 (503)
T ss_pred             CCcEEEEeccchHHHHHHHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC
Confidence            9999999999999887 67789999999999  999999999999999999999887766554332    5777888889


Q ss_pred             eEEEEecCCeEEEEeCCCCccc-cccccCcc--cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQE-FKKTESPL--KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC  248 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~  248 (356)
                      .++.-+-|+.|.+|.+...-.. .+.....|  .+....+.|+|+    +.+|++|..+|.+.+||+++.  +.+..+++
T Consensus       399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD----G~~l~SGdsdG~v~~wdwkt~--kl~~~lka  472 (503)
T KOG0282|consen  399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD----GRTLCSGDSDGKVNFWDWKTT--KLVSKLKA  472 (503)
T ss_pred             eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC----CCeEEeecCCccEEEeechhh--hhhhcccc
Confidence            9999999999999997654221 11111222  244577899999    899999999999999999877  78889999


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEE
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWD  289 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd  289 (356)
                      |..           ++..+.|+|.. ..+|+++.||.|++||
T Consensus       473 h~~-----------~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  473 HDQ-----------PCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCc-----------ceEEEEecCCCcceeEecccCceeEecC
Confidence            977           89999999975 7899999999999996

>KOG0306|consensus

Probab=100.00  E-value=2.6e-31  Score=223.54  Aligned_cols=281  Identities=15%  Similarity=0.235  Sum_probs=229.2

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      ....++.||+.+|+++.|...|   ..|++|+.|+.|.|||+-.  +.-...+.+|+..|+..-|..+.++|++.+.|+.
T Consensus        98 ~~~~tfngHK~AVt~l~fd~~G---~rlaSGskDt~IIvwDlV~--E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~  172 (888)
T KOG0306|consen   98 EILITFNGHKAAVTTLKFDKIG---TRLASGSKDTDIIVWDLVG--EEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSM  172 (888)
T ss_pred             ceeeeecccccceEEEEEcccC---ceEeecCCCccEEEEEecc--ceeeEEeecchHHHhHHhccCCCeEEEEeccCce
Confidence            4556788999999999999999   9999999999999999976  4555788899999999888887788888888999


Q ss_pred             EEEEEcCCCc----------------------------------------------------------------------
Q psy12911        100 VKCWDLASNQ----------------------------------------------------------------------  109 (356)
Q Consensus       100 i~vwd~~~~~----------------------------------------------------------------------  109 (356)
                      |++||+++..                                                                      
T Consensus       173 iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~  252 (888)
T KOG0306|consen  173 IKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVT  252 (888)
T ss_pred             EEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEee
Confidence            9888876531                                                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy12911        110 --------------------------------------------------------------------------------  109 (356)
Q Consensus       110 --------------------------------------------------------------------------------  109 (356)
                                                                                                      
T Consensus       253 d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~  332 (888)
T KOG0306|consen  253 DFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSG  332 (888)
T ss_pred             cCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecC
Confidence                                                                                            


Q ss_pred             ---------------------------------eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEE
Q psy12911        110 ---------------------------------SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMT  156 (356)
Q Consensus       110 ---------------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  156 (356)
                                                       .+...+|...|.+++++  .+...+++|+ .+.+++|+..+.+++++
T Consensus       333 ~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS--~d~~~~~Sga-~~SikiWn~~t~kciRT  409 (888)
T KOG0306|consen  333 GTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS--SDSILLASGA-GESIKIWNRDTLKCIRT  409 (888)
T ss_pred             CcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee--cCceeeeecC-CCcEEEEEccCcceeEE
Confidence                                             01123577778888887  7766666554 57899999998888887


Q ss_pred             EeCCC-------------------------------------------eeEEEecCCCeEEEEecCCeEEEEeCCCCcc-
Q psy12911        157 INLPE-------------------------------------------RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQ-  192 (356)
Q Consensus       157 ~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-  192 (356)
                      +....                                           ..++..+++..+++|+.|.+|++||+.--.. 
T Consensus       410 i~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~  489 (888)
T KOG0306|consen  410 ITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV  489 (888)
T ss_pred             eccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence            75321                                           0233445556789999999999998743111 


Q ss_pred             -----c----cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccc
Q psy12911        193 -----E----FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYA  263 (356)
Q Consensus       193 -----~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                           .    ...........+.|++++|+    +.+++++--|.+++||.++.-  +...++.+|.-           |
T Consensus       490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Spd----gk~LaVsLLdnTVkVyflDtl--KFflsLYGHkL-----------P  552 (888)
T KOG0306|consen  490 PGTQKKVLSLKHTRTLELEDDVLCVSVSPD----GKLLAVSLLDNTVKVYFLDTL--KFFLSLYGHKL-----------P  552 (888)
T ss_pred             CcccceeeeeccceEEeccccEEEEEEcCC----CcEEEEEeccCeEEEEEecce--eeeeeeccccc-----------c
Confidence                 0    00011235578999999999    899999999999999999876  66788999998           9


Q ss_pred             eEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        264 VNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       264 i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      |.|+..|||+++++||+.|..|+||-+.-|.+-+.+-+|.+.|.++.|-|+...+.+++.|.
T Consensus       553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~  614 (888)
T KOG0306|consen  553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG  614 (888)
T ss_pred             eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcc
Confidence            99999999999999999999999999999999999999999999999999999999998876

>KOG0641|consensus

Probab=100.00  E-value=1.2e-29  Score=184.70  Aligned_cols=286  Identities=12%  Similarity=0.123  Sum_probs=226.2

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC----------C---ceeeeeeccCCcceeEEEE
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN----------G---KTIPKSMQGMSEPVLDVAW   84 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~----------~---~~~~~~~~~~~~~v~~~~~   84 (356)
                      .+..+.++. ....|.+++|+|.|   .+.++|+...+++|-....-          .   ..+.+.-+.|.+.|.|.+|
T Consensus        22 ~f~~i~~l~-dsqairav~fhp~g---~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w   97 (350)
T KOG0641|consen   22 HFEAINILE-DSQAIRAVAFHPAG---GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW   97 (350)
T ss_pred             ceEEEEEec-chhheeeEEecCCC---ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe
Confidence            344455554 56799999999999   99999999999998754320          0   1223445678999999999


Q ss_pred             ccCCCeEEEEcCCCeEEEEEcCCC------ceeeecccCCCeeEEEEEeC--CCCCeEEEEE-CCCeEEEEeCCCCCceE
Q psy12911         85 IDDGTKVFMAGCDKTVKCWDLASN------QSMQVAQHDAPVKTCHWIKA--PNYTCLMTGS-WDKTLKFWDLRTPQPIM  155 (356)
Q Consensus        85 s~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~-~dg~i~iwd~~~~~~~~  155 (356)
                      +|+|++|++|+.|.+|++...+..      ..+.+.-|.+.|..++|...  ..+.+|++++ .|..|++-|...++..+
T Consensus        98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~  177 (350)
T KOG0641|consen   98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH  177 (350)
T ss_pred             cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce
Confidence            999999999999999999876543      33456779999999999732  2456677765 36678888999999999


Q ss_pred             EEeCCCe-eE-EEecCCCeEEEEecCCeEEEEeCCCCccccccccCcc-----cccceEEEeecCCCCCCCeEEEeecCC
Q psy12911        156 TINLPER-CY-CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPL-----KYQNRCIAIFRDKKKQPAGYGLGSVEG  228 (356)
Q Consensus       156 ~~~~~~~-~~-~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~dg  228 (356)
                      .+.++.. ++ ..++++-.+++|+.|.+|++||++-+......-...+     ...+.++++.|.    +.++++|-.|.
T Consensus       178 a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps----grll~sg~~ds  253 (350)
T KOG0641|consen  178 ALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS----GRLLASGHADS  253 (350)
T ss_pred             eecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC----cceeeeccCCC
Confidence            9998874 33 3567788999999999999999987643322222122     256889999999    89999999999


Q ss_pred             eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC-----CCCCCc
Q psy12911        229 RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK-----PSEAMD  303 (356)
Q Consensus       229 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~  303 (356)
                      ...+||++.+  ..++.+..|..           .|.++.|||...||++++.|..|++-|+. |.+.+     ....|.
T Consensus       254 sc~lydirg~--r~iq~f~phsa-----------dir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ehk  319 (350)
T KOG0641|consen  254 SCMLYDIRGG--RMIQRFHPHSA-----------DIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHK  319 (350)
T ss_pred             ceEEEEeeCC--ceeeeeCCCcc-----------ceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEEecc
Confidence            9999999987  67888988887           89999999999999999999999999987 33333     334688


Q ss_pred             cceEEEEECCCCCEEEEEeccC
Q psy12911        304 MSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       304 ~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ..+..+.|+|..-.+++.+.|.
T Consensus       320 dk~i~~rwh~~d~sfisssadk  341 (350)
T KOG0641|consen  320 DKAIQCRWHPQDFSFISSSADK  341 (350)
T ss_pred             CceEEEEecCccceeeeccCcc
Confidence            8889999999998888887654

>KOG1332|consensus

Probab=100.00  E-value=1.3e-31  Score=196.61  Aligned_cols=255  Identities=18%  Similarity=0.185  Sum_probs=204.6

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc-eeeeeeccCCcceeEEEEcc--CCCeEEEEcCCCe
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK-TIPKSMQGMSEPVLDVAWID--DGTKVFMAGCDKT   99 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~   99 (356)
                      .+-..|++.|..+...-.|   ..|||++.|++|+|+.++.++. .++..+.+|.++|..++|..  -|..||+++.||.
T Consensus         5 ~idt~H~D~IHda~lDyyg---krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk   81 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYYG---KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK   81 (299)
T ss_pred             ehhhhhhhhhhHhhhhhhc---ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence            3456799999999999888   9999999999999999998775 77889999999999999976  8999999999999


Q ss_pred             EEEEEcCCCceee---ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-C-ce-EEEeCC---CeeEEEecC-
Q psy12911        100 VKCWDLASNQSMQ---VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-Q-PI-MTINLP---ERCYCADVD-  169 (356)
Q Consensus       100 i~vwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~-~~-~~~~~~---~~~~~~~~~-  169 (356)
                      |.||.-+.++..+   ...|...|++++|.|+.-|-.|++++.||.|.|.+.+.. . .. +....|   .+.++..+. 
T Consensus        82 VIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~  161 (299)
T KOG1332|consen   82 VIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS  161 (299)
T ss_pred             EEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcC
Confidence            9999998886543   567999999999998788889999999999999998764 1 11 112222   233444333 


Q ss_pred             --C-----------CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911        170 --Y-----------PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN  236 (356)
Q Consensus       170 --~-----------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  236 (356)
                        +           ..+++|+.|..|+||+.....-........|..-++.++|.|........+++++.||++.||..+
T Consensus       162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence              1           358999999999999999875444444567889999999999865556789999999999999887


Q ss_pred             CCCCCCc-ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        237 PANPKDN-FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       237 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      .....-. ..++....           .+..+.||+.|++|+.++.|+.|.+|.-.
T Consensus       242 ~e~e~wk~tll~~f~~-----------~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  242 EEYEPWKKTLLEEFPD-----------VVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             CccCcccccccccCCc-----------ceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            4422111 11222222           79999999999999999999999999754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.9e-30  Score=240.10  Aligned_cols=254  Identities=15%  Similarity=0.213  Sum_probs=193.4

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEEEEEcC
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~  106 (356)
                      +...|.+++|++..  +.+|++++.||+|+|||+.+  ......+.+|...|++++|+| ++.+|++|+.|++|++||+.
T Consensus       531 ~~~~v~~l~~~~~~--~~~las~~~Dg~v~lWd~~~--~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~  606 (793)
T PLN00181        531 SRSKLSGICWNSYI--KSQVASSNFEGVVQVWDVAR--SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN  606 (793)
T ss_pred             ccCceeeEEeccCC--CCEEEEEeCCCeEEEEECCC--CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence            35689999998853  28999999999999999987  345577889999999999997 78899999999999999999


Q ss_pred             CCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC-ceEEEeCCC-eeEEEec-CCCeEEEEecCCeEE
Q psy12911        107 SNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ-PIMTINLPE-RCYCADV-DYPLAVVGTAGRGIV  183 (356)
Q Consensus       107 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~-~~~~~~~-~~~~~~~~~~d~~i~  183 (356)
                      ++..+....+...+.++.|++ +++.+|++|+.||.|++||+++.+ .+..+..+. .+..+.+ .+..+++++.|++|+
T Consensus       607 ~~~~~~~~~~~~~v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ik  685 (793)
T PLN00181        607 QGVSIGTIKTKANICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLK  685 (793)
T ss_pred             CCcEEEEEecCCCeEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEE
Confidence            988776545567899999963 678999999999999999998865 466666655 3444444 456899999999999


Q ss_pred             EEeCCCCcc----ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcc
Q psy12911        184 LYQLEGKPQ----EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQ  259 (356)
Q Consensus       184 i~d~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (356)
                      +||++....    ........|...+.+++++++    +.++++|+.|+.+++|+.....+...+.+.............
T Consensus       686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~----~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~  761 (793)
T PLN00181        686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS----DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD  761 (793)
T ss_pred             EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC----CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCC
Confidence            999975321    111122346677889999998    789999999999999997654221111111110000000011


Q ss_pred             cccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        260 DIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       260 ~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                      +...|.+++|+|++..|++|+.||.|+||++
T Consensus       762 ~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        762 ASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            1226999999999999999999999999996

>KOG0276|consensus

Probab=100.00  E-value=1.4e-31  Score=220.76  Aligned_cols=237  Identities=16%  Similarity=0.242  Sum_probs=214.5

Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeC
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL  148 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~  148 (356)
                      +.+..++..|.++.|+|....++++-.+|.|.||+.++...++ +.-..-+|++..|.  ...+.+++|+.|..|++|+.
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfi--aRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFI--ARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheee--eccceEEEecCCceEEEEec
Confidence            4455689999999999999999999999999999999998887 56677899999999  88899999999999999999


Q ss_pred             CCCCceEEEeCCC---eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee
Q psy12911        149 RTPQPIMTINLPE---RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS  225 (356)
Q Consensus       149 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  225 (356)
                      .+++.+..++.|.   +++.+.+..+++++++.|-.|++||.+..-.. ......|.+.|.+++|.|..   .+.+++++
T Consensus        85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~-~qtfeGH~HyVMqv~fnPkD---~ntFaS~s  160 (794)
T KOG0276|consen   85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWAC-EQTFEGHEHYVMQVAFNPKD---PNTFASAS  160 (794)
T ss_pred             ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceee-eeEEcCcceEEEEEEecCCC---ccceeeee
Confidence            9999999999987   46777888899999999999999999876433 33344788999999999984   78999999


Q ss_pred             cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC--CEEEEEcCCCeEEEEEcCcceecCCCCCCc
Q psy12911        226 VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH--GTLATVGSEGTFSFWDKDARTKLKPSEAMD  303 (356)
Q Consensus       226 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  303 (356)
                      -|++|++|.+...  .+.+++++|..           .|+++.+-+-|  .+|++|++|.+|+|||..+..+++++++|.
T Consensus       161 LDrTVKVWslgs~--~~nfTl~gHek-----------GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt  227 (794)
T KOG0276|consen  161 LDRTVKVWSLGSP--HPNFTLEGHEK-----------GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHT  227 (794)
T ss_pred             ccccEEEEEcCCC--CCceeeecccc-----------CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccc
Confidence            9999999999766  77899999998           89999998755  799999999999999999999999999999


Q ss_pred             cceEEEEECCCCCEEEEEeccC
Q psy12911        304 MSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       304 ~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ..|..+.|+|.-..+++||.|+
T Consensus       228 ~Nvs~v~fhp~lpiiisgsEDG  249 (794)
T KOG0276|consen  228 NNVSFVFFHPELPIIISGSEDG  249 (794)
T ss_pred             ccceEEEecCCCcEEEEecCCc
Confidence            9999999999999999999887

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=2.3e-30  Score=223.56  Aligned_cols=240  Identities=11%  Similarity=0.115  Sum_probs=178.2

Q ss_pred             CceEEeCCCCCCeeEEEecCC-CCCceEEEEEeCCCeEEEEeccCCCc------eeeeeeccCCcceeEEEEccCCCe-E
Q psy12911         20 KDFEVVSPPEDSISCMAFSPS-TLPQYFLIAGSWDNNVRCWEVEPNGK------TIPKSMQGMSEPVLDVAWIDDGTK-V   91 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~-~~~~~~l~~~~~dg~i~vw~~~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~-l   91 (356)
                      ..+..+.+|.+.|.+++|+|+ +   .+||+|+.|++|+|||+.+.+.      .....+.+|...|.+++|+|++.. |
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~---~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iL  141 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFS---EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIM  141 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCC---CEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEE
Confidence            456778999999999999997 5   8999999999999999976332      123467889999999999998876 4


Q ss_pred             EEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCC
Q psy12911         92 FMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYP  171 (356)
Q Consensus        92 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (356)
                      ++++.|++|++||+++++......|...|.+++|+  ++|.+|++++.|+.|+|||+++++.+.++..|.....      
T Consensus       142 aSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slsws--pdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~------  213 (568)
T PTZ00420        142 CSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWN--IKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKN------  213 (568)
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEEC--CCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCce------
Confidence            68899999999999998876644577889999999  9999999999999999999999988887765542100      


Q ss_pred             eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC----eEEEEEeCCCCCCCcceee
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG----RVAIQYVNPANPKDNFTFK  247 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg----~i~i~~~~~~~~~~~~~~~  247 (356)
                                                    ...+....++++    +.++++++.++    .|+|||++... .++..+.
T Consensus       214 ------------------------------s~~v~~~~fs~d----~~~IlTtG~d~~~~R~VkLWDlr~~~-~pl~~~~  258 (568)
T PTZ00420        214 ------------------------------TKNIWIDGLGGD----DNYILSTGFSKNNMREMKLWDLKNTT-SALVTMS  258 (568)
T ss_pred             ------------------------------eEEEEeeeEcCC----CCEEEEEEcCCCCccEEEEEECCCCC-CceEEEE
Confidence                                          000112233455    56777777664    79999987532 3444433


Q ss_pred             eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee--cCCCCCCccceEEEEECCCC
Q psy12911        248 CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK--LKPSEAMDMSISTCALNHNG  315 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~  315 (356)
                      .+....         .+......++|.++++|+.|+.|++|++..+..  +..+. +..++.+++|.|..
T Consensus       259 ld~~~~---------~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        259 IDNASA---------PLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             ecCCcc---------ceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence            322100         333444456689999999999999999987642  22222 46688899999864

>KOG0640|consensus

Probab=100.00  E-value=3.6e-31  Score=201.04  Aligned_cols=291  Identities=14%  Similarity=0.168  Sum_probs=227.6

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccC------------C----CceeeeeeccCCcceeEE
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEP------------N----GKTIPKSMQGMSEPVLDV   82 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~------------~----~~~~~~~~~~~~~~v~~~   82 (356)
                      .-....+..|++++.+.+|+|||   .++|+|+.|..|+|.|++.            +    .-+.++++..|..+|+++
T Consensus       102 ~yEt~ylt~HK~~cR~aafs~DG---~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l  178 (430)
T KOG0640|consen  102 EYETKYLTSHKSPCRAAAFSPDG---SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL  178 (430)
T ss_pred             ccceEEEeecccceeeeeeCCCC---cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence            34456678899999999999999   9999999999999999972            1    125667888999999999


Q ss_pred             EEccCCCeEEEEcCCCeEEEEEcCCCceee---ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC
Q psy12911         83 AWIDDGTKVFMAGCDKTVKCWDLASNQSMQ---VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL  159 (356)
Q Consensus        83 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  159 (356)
                      .|+|....|++++.|++|++||+......+   ......+|.++.|+  |.|.+|+.|..-..+++||+.+.++...-+.
T Consensus       179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfH--PsGefllvgTdHp~~rlYdv~T~QcfvsanP  256 (430)
T KOG0640|consen  179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFH--PSGEFLLVGTDHPTLRLYDVNTYQCFVSANP  256 (430)
T ss_pred             eecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeec--CCCceEEEecCCCceeEEeccceeEeeecCc
Confidence            999999999999999999999997654433   45567899999999  9999999999999999999999887665542


Q ss_pred             CC------eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEE
Q psy12911        160 PE------RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQ  233 (356)
Q Consensus       160 ~~------~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~  233 (356)
                      ..      ..+..+..+...++++.||.|++||--.+..........-+..|.+..|..+    +.++++.+.|..+++|
T Consensus       257 d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn----~kyiLsSG~DS~vkLW  332 (430)
T KOG0640|consen  257 DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN----GKYILSSGKDSTVKLW  332 (430)
T ss_pred             ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC----CeEEeecCCcceeeee
Confidence            22      2344556667999999999999999877654433333333467888888888    8999999999999999


Q ss_pred             EeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC-CCeEEEEEcCcceecCCCC-CCccceEEEEE
Q psy12911        234 YVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS-EGTFSFWDKDARTKLKPSE-AMDMSISTCAL  311 (356)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~  311 (356)
                      .+..+  ..+.++.+....+. ..     --+...|.....|++.-.+ .+.+.-||.+++..+..+. +|.+.++.+.-
T Consensus       333 Ei~t~--R~l~~YtGAg~tgr-q~-----~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~H  404 (430)
T KOG0640|consen  333 EISTG--RMLKEYTGAGTTGR-QK-----HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVH  404 (430)
T ss_pred             eecCC--ceEEEEecCCcccc-hh-----hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEe
Confidence            99876  55655554321000 00     1234456666677666543 4679999999987766554 89999999999


Q ss_pred             CCCCCEEEEEeccCCc
Q psy12911        312 NHNGQIFAYAVSYDWS  327 (356)
Q Consensus       312 s~~~~~l~~~s~~d~~  327 (356)
                      ||.+.-+.+++ ||+.
T Consensus       405 SP~~p~FmTcs-dD~r  419 (430)
T KOG0640|consen  405 SPVEPAFMTCS-DDFR  419 (430)
T ss_pred             CCCCCceeeec-ccce
Confidence            99999999997 5543

>KOG0274|consensus

Probab=100.00  E-value=1.6e-30  Score=223.77  Aligned_cols=270  Identities=20%  Similarity=0.310  Sum_probs=227.4

Q ss_pred             EEeCC-CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911         23 EVVSP-PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK  101 (356)
Q Consensus        23 ~~~~~-h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  101 (356)
                      ..+.+ |...+.|..|. +    .++++++.|++|++|+..+ +..+...+.+|.+.|.++++..-+.+|++|+.|.+++
T Consensus       201 ~~~~~~~~~~~~~~q~~-~----~~~~~~s~~~tl~~~~~~~-~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~r  274 (537)
T KOG0274|consen  201 KVLLGTDDHVVLCLQLH-D----GFFKSGSDDSTLHLWDLNN-GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTER  274 (537)
T ss_pred             eeecccCcchhhhheee-c----CeEEecCCCceeEEeeccc-ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEE
Confidence            33443 67788999998 3    5899999999999999987 4555455999999999999987788999999999999


Q ss_pred             EEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC-CCeeEEEecCCCeEEEEecC
Q psy12911        102 CWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL-PERCYCADVDYPLAVVGTAG  179 (356)
Q Consensus       102 vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d  179 (356)
                      +||..++++.. +.+|.+.|.++...    ..++++|+.|.+|++|++.++..+..+.+ ...+.++...++.+++|+.|
T Consensus       275 vWd~~sg~C~~~l~gh~stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d  350 (537)
T KOG0274|consen  275 VWDCSTGECTHSLQGHTSSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYD  350 (537)
T ss_pred             eEecCCCcEEEEecCCCceEEEEEcc----CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecC
Confidence            99999999998 77899999999854    56788899999999999999999999995 44688888999999999999


Q ss_pred             CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcc
Q psy12911        180 RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQ  259 (356)
Q Consensus       180 ~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (356)
                      ++|++||+.+.+.  ......|...|.++.+...     ..+++|+.|+.|++||++... +++.++.+|..        
T Consensus       351 ~~v~VW~~~~~~c--l~sl~gH~~~V~sl~~~~~-----~~~~Sgs~D~~IkvWdl~~~~-~c~~tl~~h~~--------  414 (537)
T KOG0274|consen  351 GTVKVWDPRTGKC--LKSLSGHTGRVYSLIVDSE-----NRLLSGSLDTTIKVWDLRTKR-KCIHTLQGHTS--------  414 (537)
T ss_pred             ceEEEEEhhhcee--eeeecCCcceEEEEEecCc-----ceEEeeeeccceEeecCCchh-hhhhhhcCCcc--------
Confidence            9999999996543  2333458899999977662     489999999999999998764 67889999987        


Q ss_pred             cccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC-CccceEEEEECCCCCEEEEEeccC
Q psy12911        260 DIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA-MDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       260 ~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                         -+..+.+  .+++|++++.|++|++||.+++++++.+.+ |.+.|..+++.  ...+++++.+.
T Consensus       415 ---~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~  474 (537)
T KOG0274|consen  415 ---LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDG  474 (537)
T ss_pred             ---ccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCC
Confidence               5655555  578999999999999999999999999998 67889988887  44555555443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.7e-30  Score=210.27  Aligned_cols=244  Identities=22%  Similarity=0.326  Sum_probs=203.9

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      +....+..|...+.++.|+|++   ++|++++.||.|++|++...  .....+..|...|.++.|+++++++++++.|+.
T Consensus        42 ~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  116 (289)
T cd00200          42 ELLRTLKGHTGPVRDVAASADG---TYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT  116 (289)
T ss_pred             CcEEEEecCCcceeEEEECCCC---CEEEEEcCCCeEEEEEcCcc--cceEEEeccCCcEEEEEEcCCCCEEEEecCCCe
Confidence            3556678899999999999998   89999999999999999873  344667789999999999999888888888999


Q ss_pred             EEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-ee--EEEecCCCeEEE
Q psy12911        100 VKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RC--YCADVDYPLAVV  175 (356)
Q Consensus       100 i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~  175 (356)
                      |.+||+.+++... +..|...+.++.|+  +++.++++++.|+.|++||+++++.+..+..+. .+  +.+...+..+++
T Consensus       117 i~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  194 (289)
T cd00200         117 IKVWDVETGKCLTTLRGHTDWVNSVAFS--PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS  194 (289)
T ss_pred             EEEEECCCcEEEEEeccCCCcEEEEEEc--CcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEE
Confidence            9999999777665 56788999999999  888888888889999999999988888887665 34  444555558999


Q ss_pred             EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      ++.++.|++||++........  ..+...+.++.++|+    +..+++++.++.+++|++...  .....+..|..    
T Consensus       195 ~~~~~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~----  262 (289)
T cd00200         195 SSSDGTIKLWDLSTGKCLGTL--RGHENGVNSVAFSPD----GYLLASGSEDGTIRVWDLRTG--ECVQTLSGHTN----  262 (289)
T ss_pred             ecCCCcEEEEECCCCceecch--hhcCCceEEEEEcCC----CcEEEEEcCCCcEEEEEcCCc--eeEEEccccCC----
Confidence            999999999999875432222  145568999999998    678888888999999999765  45666666665    


Q ss_pred             CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD  289 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd  289 (356)
                             .|.+++|+|++++|++++.||.|++|+
T Consensus       263 -------~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         263 -------SVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             -------cEEEEEECCCCCEEEEecCCCeEEecC
Confidence                   799999999999999999999999996

>KOG0300|consensus

Probab=100.00  E-value=5.8e-31  Score=200.70  Aligned_cols=278  Identities=17%  Similarity=0.246  Sum_probs=228.3

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      .++..+.+.||++.|..++.....   ..+.+++.|.+.+||.+++ + .++..+.+|.+.|+++.|++.+.++++++.|
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tq---pi~gtASADhTA~iWs~Es-g-~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD  211 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQ---PICGTASADHTARIWSLES-G-ACLATYTGHTGSVNSIKFHNSGLLLLTASGD  211 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCC---cceeecccccceeEEeecc-c-cceeeecccccceeeEEeccccceEEEccCC
Confidence            456667789999999999988877   7999999999999999998 3 3447889999999999999999999999999


Q ss_pred             CeEEEEEc------CCC--------c---------------------------eeeecccCCCeeEEEEEeCCCCCeEEE
Q psy12911         98 KTVKCWDL------ASN--------Q---------------------------SMQVAQHDAPVKTCHWIKAPNYTCLMT  136 (356)
Q Consensus        98 g~i~vwd~------~~~--------~---------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~  136 (356)
                      ++..||..      ...        +                           +..+.+|.+.|.+..|.  ..|+.+++
T Consensus       212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL--~gg~Q~vT  289 (481)
T KOG0300|consen  212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL--AGGQQMVT  289 (481)
T ss_pred             cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh--cCcceeee
Confidence            99999972      110        0                           12366899999999999  99999999


Q ss_pred             EECCCeEEEEeCCCCCceEEEeCCCee---EEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecC
Q psy12911        137 GSWDKTLKFWDLRTPQPIMTINLPERC---YCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRD  213 (356)
Q Consensus       137 ~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  213 (356)
                      ++.|.+-.+||+++++.+..+.+|..-   .+..+...++++.+.|.+.++||++..-.. ......|...++++.|..+
T Consensus       290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s-V~VFQGHtdtVTS~vF~~d  368 (481)
T KOG0300|consen  290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS-VAVFQGHTDTVTSVVFNTD  368 (481)
T ss_pred             eeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcce-eeeecccccceeEEEEecC
Confidence            999999999999999999999988753   334445568889999999999999954333 3344578889999999887


Q ss_pred             CCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc
Q psy12911        214 KKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       214 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~  293 (356)
                           ..+++|+.|.+|++||+++.. .++.++....            +++.++.+..+..||.--++..|++||++. 
T Consensus       369 -----d~vVSgSDDrTvKvWdLrNMR-splATIRtdS------------~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-  429 (481)
T KOG0300|consen  369 -----DRVVSGSDDRTVKVWDLRNMR-SPLATIRTDS------------PANRVAVSKGHPIIAIPHDNRQVRLFDLNG-  429 (481)
T ss_pred             -----CceeecCCCceEEEeeecccc-CcceeeecCC------------ccceeEeecCCceEEeccCCceEEEEecCC-
Confidence                 579999999999999998664 5666666554            799999998888999999999999999984 


Q ss_pred             eecCCC-----CCCccceEEEEECCCC--CEEEEEe
Q psy12911        294 TKLKPS-----EAMDMSISTCALNHNG--QIFAYAV  322 (356)
Q Consensus       294 ~~~~~~-----~~~~~~v~~~~~s~~~--~~l~~~s  322 (356)
                      ..+..+     ++|...|.|++|..+.  .-|++++
T Consensus       430 ~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcG  465 (481)
T KOG0300|consen  430 NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCG  465 (481)
T ss_pred             CccccCCcccccccceeeeeeeccccCccccccccc
Confidence            444433     5889999999998553  3355555

>KOG0973|consensus

Probab=100.00  E-value=1.6e-30  Score=227.34  Aligned_cols=279  Identities=18%  Similarity=0.198  Sum_probs=224.5

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEe--CCCeEEEEeccCCC----------ceeeeeeccCCcceeEEEEccCCCeEE
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGS--WDNNVRCWEVEPNG----------KTIPKSMQGMSEPVLDVAWIDDGTKVF   92 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~----------~~~~~~~~~~~~~v~~~~~s~~~~~l~   92 (356)
                      +..+...|.+++.+|++   ..+|||+  .|+.++||+.+.-.          ...+.....|.+.|+|+.|+|||++||
T Consensus         9 v~H~~~~IfSIdv~pdg---~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA   85 (942)
T KOG0973|consen    9 VNHNEKSIFSIDVHPDG---VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA   85 (942)
T ss_pred             cccCCeeEEEEEecCCc---eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence            34456679999999999   9999999  89999999875411          233356678999999999999999999


Q ss_pred             EEcCCCeEEEEEcCC----------C---------ceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc
Q psy12911         93 MAGCDKTVKCWDLAS----------N---------QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP  153 (356)
Q Consensus        93 ~~~~dg~i~vwd~~~----------~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  153 (356)
                      +|++|+.|.||+...          |         ....+.+|...|..++|+  |++.++++++.|++|.|||.++.+.
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws--p~~~~lvS~s~DnsViiwn~~tF~~  163 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS--PDDSLLVSVSLDNSVIIWNAKTFEL  163 (942)
T ss_pred             eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC--CCccEEEEecccceEEEEcccccee
Confidence            999999999999873          0         122367899999999999  9999999999999999999999999


Q ss_pred             eEEEeCCCe---eEEEecCCCeEEEEecCCeEEEEeCCCCccccccc----cCcccccceEEEeecCCCCCCCeEEEeec
Q psy12911        154 IMTINLPER---CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT----ESPLKYQNRCIAIFRDKKKQPAGYGLGSV  226 (356)
Q Consensus       154 ~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  226 (356)
                      +..+.+|..   .+.+++.+.++++-+.|++|++|++..-.......    ..+.......++|+|+    |.+|++...
T Consensus       164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD----G~~las~nA  239 (942)
T KOG0973|consen  164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD----GHHLASPNA  239 (942)
T ss_pred             eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC----cCeecchhh
Confidence            999998774   67888999999999999999999976632211111    1233455788999999    788887642


Q ss_pred             ----CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCC-----CC------------EEEEEcCCCeE
Q psy12911        227 ----EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV-----HG------------TLATVGSEGTF  285 (356)
Q Consensus       227 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-----~~------------~l~s~~~dg~i  285 (356)
                          -..+.|.+-  ++.+.-..+.+|..           ++.+++|+|.     .+            .+|+|+.|++|
T Consensus       240 ~n~~~~~~~IieR--~tWk~~~~LvGH~~-----------p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl  306 (942)
T KOG0973|consen  240 VNGGKSTIAIIER--GTWKVDKDLVGHSA-----------PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL  306 (942)
T ss_pred             ccCCcceeEEEec--CCceeeeeeecCCC-----------ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence                334555544  44466778899998           9999999982     11            68899999999


Q ss_pred             EEEEcCcceecCCCC-CCccceEEEEECCCCCEEEEEeccC
Q psy12911        286 SFWDKDARTKLKPSE-AMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       286 ~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      .||.....+++.... -....|.+++|+|||..|..+|-|+
T Consensus       307 SVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG  347 (942)
T KOG0973|consen  307 SVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG  347 (942)
T ss_pred             EEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC
Confidence            999998888876654 2356899999999999999999776

>KOG0310|consensus

Probab=100.00  E-value=9.5e-31  Score=209.84  Aligned_cols=243  Identities=19%  Similarity=0.270  Sum_probs=202.4

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEEEE
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw  103 (356)
                      +.--++.|.++.|-.||   ++||+|...|.|+|||..+  ...++.+.+|..+|..+.|+| ++..+++|+.|+.+++|
T Consensus        64 ~srFk~~v~s~~fR~DG---~LlaaGD~sG~V~vfD~k~--r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~  138 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDG---RLLAAGDESGHVKVFDMKS--RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYW  138 (487)
T ss_pred             HHhhccceeEEEeecCC---eEEEccCCcCcEEEecccc--HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEE
Confidence            34456789999999999   9999999999999999655  667789999999999999999 45577888899999999


Q ss_pred             EcCCCcee-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeCCCeeEEEecCCC-eEEEEecCC
Q psy12911        104 DLASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINLPERCYCADVDYP-LAVVGTAGR  180 (356)
Q Consensus       104 d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~  180 (356)
                      |+.+.... .+.+|+..|.+.+|+| .++.++++|+.||.|++||+++. ..+.+++....+-.+.+-++ .+++.....
T Consensus       139 d~s~a~v~~~l~~htDYVR~g~~~~-~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn  217 (487)
T KOG0310|consen  139 DLSTAYVQAELSGHTDYVRCGDISP-ANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN  217 (487)
T ss_pred             EcCCcEEEEEecCCcceeEeecccc-CCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC
Confidence            99998865 3889999999999995 55679999999999999999987 78888888777655555444 555555668


Q ss_pred             eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCccc
Q psy12911        181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQD  260 (356)
Q Consensus       181 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      .+++||+-++.+...... .|...|+|+++..+    +..|++++-|+.+++|++...  +.++.+.-..          
T Consensus       218 ~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~----~~rLlS~sLD~~VKVfd~t~~--Kvv~s~~~~~----------  280 (487)
T KOG0310|consen  218 SVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASD----STRLLSGSLDRHVKVFDTTNY--KVVHSWKYPG----------  280 (487)
T ss_pred             eEEEEEecCCceehhhhh-cccceEEEEEeecC----CceEeecccccceEEEEccce--EEEEeeeccc----------
Confidence            999999997765544444 38889999999998    789999999999999997554  5566555443          


Q ss_pred             ccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        261 IYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       261 ~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                        +|.+++.+|+++.++.|..||.+.+-+...
T Consensus       281 --pvLsiavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  281 --PVLSIAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             --ceeeEEecCCCceEEEecccceeeeehhhc
Confidence              899999999999999999999988775443

>KOG2096|consensus

Probab=100.00  E-value=4.6e-30  Score=195.66  Aligned_cols=283  Identities=15%  Similarity=0.144  Sum_probs=211.4

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec--cCCcceeEEEEccCCCeEE-EEcCC
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ--GMSEPVLDVAWIDDGTKVF-MAGCD   97 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~-~~~~d   97 (356)
                      ....+++|.+.|++++|+.||   ++||+++.|+.|+||+++.-..+.-+.+.  ..-+..+.+.|+||-+-++ ++-..
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdG---K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g  154 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDG---KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG  154 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCC---ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence            345689999999999999999   99999999999999999873321111111  1123567889999887554 44456


Q ss_pred             CeEEEEEcCCCce-------e-----e-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---
Q psy12911         98 KTVKCWDLASNQS-------M-----Q-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---  161 (356)
Q Consensus        98 g~i~vwd~~~~~~-------~-----~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---  161 (356)
                      .++++|.+...+-       +     . ...|.-.+..+-..  .++.+|++++.|..|.+|+++ |+.+.++....   
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA--~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n  231 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA--GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN  231 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec--CCceEEEEecCCCcEEEEecC-Cceeeeeccccccc
Confidence            7899998753321       0     1 12355666666666  888999999999999999998 88888887544   


Q ss_pred             eeEEEecCCCeEEEEecCCeEEEEeCCCCc----c--ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911        162 RCYCADVDYPLAVVGTAGRGIVLYQLEGKP----Q--EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV  235 (356)
Q Consensus       162 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  235 (356)
                      .-.++++++.++++++-..-+++|.+--.+    +  ........|...|...+|+++    ...+++.+.||.+++||.
T Consensus       232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~----S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS----STRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC----cceeEEEecCCcEEEeec
Confidence            456789999999999999999999974321    1  112223568889999999999    889999999999999998


Q ss_pred             CCC-----CCCCcceee--eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC-CCccceE
Q psy12911        236 NPA-----NPKDNFTFK--CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE-AMDMSIS  307 (356)
Q Consensus       236 ~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~  307 (356)
                      +..     .++.+.+..  .|..     +   . .-..++++|.|+.||.+. ...++++..++|+....++ .|+..|.
T Consensus       308 dVrY~~~qDpk~Lk~g~~pl~aa-----g---~-~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is  377 (420)
T KOG2096|consen  308 DVRYEAGQDPKILKEGSAPLHAA-----G---S-EPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTIS  377 (420)
T ss_pred             cceEecCCCchHhhcCCcchhhc-----C---C-CceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCcee
Confidence            643     122222221  1111     0   0 233899999999998775 4579999999998887775 7899999


Q ss_pred             EEEECCCCCEEEEEec
Q psy12911        308 TCALNHNGQIFAYAVS  323 (356)
Q Consensus       308 ~~~~s~~~~~l~~~s~  323 (356)
                      +++|+++|+++++++.
T Consensus       378 ~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  378 SISYSSDGKYIATCGD  393 (420)
T ss_pred             eEEecCCCcEEeeecc
Confidence            9999999999999973

>KOG0305|consensus

Probab=99.98  E-value=3.8e-30  Score=213.67  Aligned_cols=250  Identities=16%  Similarity=0.235  Sum_probs=210.3

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeecc-CCcceeEEEEccCCCeEEEEcCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQG-MSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      -+...+...+.+.|+++.|+++|   .+|++|..+|.|.|||...  ......+.+ |...|-+++|+  +..+.+|+.|
T Consensus       207 ~~v~~l~~~~~~~vtSv~ws~~G---~~LavG~~~g~v~iwD~~~--~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~  279 (484)
T KOG0305|consen  207 GSVTELCSFGEELVTSVKWSPDG---SHLAVGTSDGTVQIWDVKE--QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRD  279 (484)
T ss_pred             CceEEeEecCCCceEEEEECCCC---CEEEEeecCCeEEEEehhh--ccccccccCCcCceeEEEecc--CceEEEecCC
Confidence            33444555558999999999999   9999999999999999987  444567777 99999999998  5689999999


Q ss_pred             CeEEEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEE
Q psy12911         98 KTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVV  175 (356)
Q Consensus        98 g~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (356)
                      +.|..+|++..+...  +.+|...|..+.|+  +|+.++++|+.|+.+.|||....+++..+.                 
T Consensus       280 ~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws--~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-----------------  340 (484)
T KOG0305|consen  280 GKILNHDVRISQHVVSTLQGHRQEVCGLKWS--PDGNQLASGGNDNVVFIWDGLSPEPKFTFT-----------------  340 (484)
T ss_pred             CcEEEEEEecchhhhhhhhcccceeeeeEEC--CCCCeeccCCCccceEeccCCCccccEEEe-----------------
Confidence            999999999876543  67899999999999  999999999999999999986666666654                 


Q ss_pred             EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee--cCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS--VEGRVAIQYVNPANPKDNFTFKCHRSNG  253 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~  253 (356)
                                              .|...|..++|+|-.   ..+||+|+  .|+.|++|+...+  ..+..+....   
T Consensus       341 ------------------------~H~aAVKA~awcP~q---~~lLAsGGGs~D~~i~fwn~~~g--~~i~~vdtgs---  388 (484)
T KOG0305|consen  341 ------------------------EHTAAVKALAWCPWQ---SGLLATGGGSADRCIKFWNTNTG--ARIDSVDTGS---  388 (484)
T ss_pred             ------------------------ccceeeeEeeeCCCc---cCceEEcCCCcccEEEEEEcCCC--cEecccccCC---
Confidence                                    356778999999975   56777765  6899999999865  5555555444   


Q ss_pred             CCCCcccccceEEEEEeCCCCEEEEE--cCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCc
Q psy12911        254 GAGGVQDIYAVNGIVFHPVHGTLATV--GSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHE  331 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~  331 (356)
                               .|..+.|++..+-|+++  ..++.|.||+..+.+++..+.+|...|..+++||||..+++|++|+--+.+.
T Consensus       389 ---------QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  389 ---------QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             ---------ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence                     69999999998766654  4567899999999999999999999999999999999999999998666666


Q ss_pred             cCCC
Q psy12911        332 HNNP  335 (356)
Q Consensus       332 ~~~~  335 (356)
                      .|+.
T Consensus       460 ~f~~  463 (484)
T KOG0305|consen  460 LFDE  463 (484)
T ss_pred             ccCC
Confidence            6665

>KOG0275|consensus

Probab=99.98  E-value=1.5e-31  Score=204.55  Aligned_cols=243  Identities=18%  Similarity=0.263  Sum_probs=209.0

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  103 (356)
                      .+--|.++|.|+.|+.|.   .+||+|+.||.|+||.+.+ +.++.+.-..|...|+|+.|+.|+..+++++.|.++++-
T Consensus       258 ~fMMmd~aVlci~FSRDs---EMlAsGsqDGkIKvWri~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiH  333 (508)
T KOG0275|consen  258 NFMMMDDAVLCISFSRDS---EMLASGSQDGKIKVWRIET-GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIH  333 (508)
T ss_pred             ceeecccceEEEeecccH---HHhhccCcCCcEEEEEEec-chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEe
Confidence            345688999999999998   9999999999999999999 455544445899999999999999999999999999999


Q ss_pred             EcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe------eEEEecCCCeEEEE
Q psy12911        104 DLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER------CYCADVDYPLAVVG  176 (356)
Q Consensus       104 d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  176 (356)
                      -+.+|++++ +.+|.+.|+...|.  ++|..+++++.||+|++|+..+.+++.+++....      +.-+..+...++++
T Consensus       334 GlKSGK~LKEfrGHsSyvn~a~ft--~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC  411 (508)
T KOG0275|consen  334 GLKSGKCLKEFRGHSSYVNEATFT--DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC  411 (508)
T ss_pred             ccccchhHHHhcCccccccceEEc--CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence            999999987 89999999999999  9999999999999999999999999999986542      33334455689999


Q ss_pred             ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG  256 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (356)
                      ...+++.+-++.+.-...........+..-+...+|.    +.++.+.+.|+.++.+..-.+  +...++..|..     
T Consensus       412 Nrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpk----GewiYcigED~vlYCF~~~sG--~LE~tl~VhEk-----  480 (508)
T KOG0275|consen  412 NRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPK----GEWIYCIGEDGVLYCFSVLSG--KLERTLPVHEK-----  480 (508)
T ss_pred             cCCCeEEEEeccceEEeeeccCCccCCceEEEEecCC----CcEEEEEccCcEEEEEEeecC--ceeeeeecccc-----
Confidence            9999999999987543322233334566677788898    889999999999999988766  67788888887     


Q ss_pred             CcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911        257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD  289 (356)
Q Consensus       257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd  289 (356)
                            .+..++-+|..+.||+-++||.+++|.
T Consensus       481 ------dvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  481 ------DVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ------cccccccCcccchhhhhcccchhhhcC
Confidence                  788999999999999999999999995

>KOG0289|consensus

Probab=99.98  E-value=1.3e-29  Score=200.54  Aligned_cols=271  Identities=16%  Similarity=0.203  Sum_probs=231.5

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  108 (356)
                      ...|+++...|..   ..+++|+.|..+.++|...  ...+..+.||...|+.+.|+|+...+++++.|..|+||.....
T Consensus       219 ~pgi~ald~~~s~---~~ilTGG~d~~av~~d~~s--~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~  293 (506)
T KOG0289|consen  219 TPGITALDIIPSS---SKILTGGEDKTAVLFDKPS--NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS  293 (506)
T ss_pred             CCCeeEEeecCCC---CcceecCCCCceEEEecch--hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence            4578899999886   7899999999999999987  5666899999999999999999999999999999999998766


Q ss_pred             ceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-----eeEEEecCCCeEEEEecCCeE
Q psy12911        109 QSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-----RCYCADVDYPLAVVGTAGRGI  182 (356)
Q Consensus       109 ~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~d~~i  182 (356)
                      .... ...|.++|+.+..+  |.|.||++++.|++..+.|++++..+.......     ....+.+++..+.+|..|+.+
T Consensus       294 s~~~~~~~h~~~V~~ls~h--~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~v  371 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLH--PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVV  371 (506)
T ss_pred             cCccccccccccceeeeec--cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceE
Confidence            6544 78899999999999  999999999999999999999999887776542     356677888899999999999


Q ss_pred             EEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCccccc
Q psy12911        183 VLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIY  262 (356)
Q Consensus       183 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      ++||+..+... ..+ ..|.++|..++|+.+    |.++++++.|+.|++||++..  +...++.....          +
T Consensus       372 kiwdlks~~~~-a~F-pght~~vk~i~FsEN----GY~Lat~add~~V~lwDLRKl--~n~kt~~l~~~----------~  433 (506)
T KOG0289|consen  372 KIWDLKSQTNV-AKF-PGHTGPVKAISFSEN----GYWLATAADDGSVKLWDLRKL--KNFKTIQLDEK----------K  433 (506)
T ss_pred             EEEEcCCcccc-ccC-CCCCCceeEEEeccC----ceEEEEEecCCeEEEEEehhh--cccceeecccc----------c
Confidence            99999987633 223 358999999999999    899999999999999999876  34444443332          1


Q ss_pred             ceEEEEEeCCCCEEEEEcCCCeEEEEEcC--cceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        263 AVNGIVFHPVHGTLATVGSEGTFSFWDKD--ARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       263 ~i~~i~~sp~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                      .+.++.|.+.|.+|+.++.|=.|++++-.  +.+++..+..|.+..+.+.|..+.++++++|-|
T Consensus       434 ~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd  497 (506)
T KOG0289|consen  434 EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMD  497 (506)
T ss_pred             cceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccch
Confidence            59999999999999999888777777733  567788888899999999999999999999854

>KOG0294|consensus

Probab=99.97  E-value=2.4e-29  Score=191.31  Aligned_cols=245  Identities=18%  Similarity=0.249  Sum_probs=200.0

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCC--eEEEEc
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT--KVFMAG   95 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~   95 (356)
                      .+.+...+..|.++|++++.+  +   .++|+|+.|-+|+|||+..  ......+..|.+.|+++.|.++-.  .|++|+
T Consensus        32 ~l~~lF~~~aH~~sitavAVs--~---~~~aSGssDetI~IYDm~k--~~qlg~ll~HagsitaL~F~~~~S~shLlS~s  104 (362)
T KOG0294|consen   32 TLKPLFAFSAHAGSITALAVS--G---PYVASGSSDETIHIYDMRK--RKQLGILLSHAGSITALKFYPPLSKSHLLSGS  104 (362)
T ss_pred             eeeccccccccccceeEEEec--c---eeEeccCCCCcEEEEeccc--hhhhcceeccccceEEEEecCCcchhheeeec
Confidence            345567788999999999987  4   8999999999999999988  444467778999999999998665  899999


Q ss_pred             CCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--eeEEEecCCCe
Q psy12911         96 CDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--RCYCADVDYPL  172 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~  172 (356)
                      .||.|.+|+...-+++. +..|.+.|+.++.+  |.+++-++.+.|+.+++||+-.|+.-..++...  ..+.+.+.++.
T Consensus       105 dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH--PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~  182 (362)
T KOG0294|consen  105 DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH--PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDH  182 (362)
T ss_pred             CCCcEEEEEcCCeEEeeeecccccccceeEec--CCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCE
Confidence            99999999999887776 88999999999999  999999999999999999999998766666544  45666667777


Q ss_pred             EEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCC
Q psy12911        173 AVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSN  252 (356)
Q Consensus       173 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  252 (356)
                      ++++.. ..|-+|.+......... .  ....+.|+.|..     +..+++|..++.|.+||.+..  .+...+.+|.. 
T Consensus       183 F~v~~~-~~i~i~q~d~A~v~~~i-~--~~~r~l~~~~l~-----~~~L~vG~d~~~i~~~D~ds~--~~~~~~~AH~~-  250 (362)
T KOG0294|consen  183 FVVSGR-NKIDIYQLDNASVFREI-E--NPKRILCATFLD-----GSELLVGGDNEWISLKDTDSD--TPLTEFLAHEN-  250 (362)
T ss_pred             EEEEec-cEEEEEecccHhHhhhh-h--ccccceeeeecC-----CceEEEecCCceEEEeccCCC--ccceeeecchh-
Confidence            776665 46888988765322211 1  123355555544     468999999999999999875  77899999998 


Q ss_pred             CCCCCcccccceEEEEE--eCCCCEEEEEcCCCeEEEEEcCcc
Q psy12911        253 GGAGGVQDIYAVNGIVF--HPVHGTLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       253 ~~~~~~~~~~~i~~i~~--sp~~~~l~s~~~dg~i~iwd~~~~  293 (356)
                                .|-++.+  .|++.+|++++.||.|+|||++..
T Consensus       251 ----------RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  251 ----------RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ----------heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence                      8988884  466799999999999999998865

>KOG0264|consensus

Probab=99.97  E-value=4.3e-30  Score=204.41  Aligned_cols=242  Identities=17%  Similarity=0.253  Sum_probs=200.7

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCce--------eeeeeccCCcceeEEEEccC-CCeEEEEc
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKT--------IPKSMQGMSEPVLDVAWIDD-GTKVFMAG   95 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~--------~~~~~~~~~~~v~~~~~s~~-~~~l~~~~   95 (356)
                      .--|.+.|+.+.+.|..  +.++|+++..+.|.|||.......        +...+.+|...-++++|++. .-.|++++
T Consensus       120 ~i~h~gEVnRaRymPQn--p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~  197 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQN--PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS  197 (422)
T ss_pred             eccCCccchhhhhCCCC--CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence            34699999999999988  678888999999999998763322        22378899998899999984 34899999


Q ss_pred             CCCeEEEEEcCCCce--------eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC--CceEEEeCCCeeEE
Q psy12911         96 CDKTVKCWDLASNQS--------MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP--QPIMTINLPERCYC  165 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~  165 (356)
                      .|++|++||+.....        ..+.+|...|..++|++ .+..+|++++.|+.+.|||+|++  ++...         
T Consensus       198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~-~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~---------  267 (422)
T KOG0264|consen  198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHP-LHEDLFGSVGDDGKLMIWDTRSNTSKPSHS---------  267 (422)
T ss_pred             CCCcEEEEeccccccCCccccceEEeecCCcceehhhccc-cchhhheeecCCCeEEEEEcCCCCCCCccc---------
Confidence            999999999975432        23678999999999996 56678999999999999999863  22222         


Q ss_pred             EecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911        166 ADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT  245 (356)
Q Consensus       166 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  245 (356)
                                                      ...|...+.|++|+|-.   +..||+|+.|++|.+||++... +++++
T Consensus       268 --------------------------------~~ah~~~vn~~~fnp~~---~~ilAT~S~D~tV~LwDlRnL~-~~lh~  311 (422)
T KOG0264|consen  268 --------------------------------VKAHSAEVNCVAFNPFN---EFILATGSADKTVALWDLRNLN-KPLHT  311 (422)
T ss_pred             --------------------------------ccccCCceeEEEeCCCC---CceEEeccCCCcEEEeechhcc-cCcee
Confidence                                            22467889999999985   6789999999999999998776 58899


Q ss_pred             eeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcc--------------eecCCCCCCccceEEEE
Q psy12911        246 FKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDAR--------------TKLKPSEAMDMSISTCA  310 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~v~~~~  310 (356)
                      +.+|..           .|.++.|||+. ..||+++.|+.+.|||+..-              +++..-.||...|..+.
T Consensus       312 ~e~H~d-----------ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Dfs  380 (422)
T KOG0264|consen  312 FEGHED-----------EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFS  380 (422)
T ss_pred             ccCCCc-----------ceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccccccc
Confidence            999998           89999999986 78999999999999998632              23455678999999999


Q ss_pred             ECCCCCEEEEEeccC
Q psy12911        311 LNHNGQIFAYAVSYD  325 (356)
Q Consensus       311 ~s~~~~~l~~~s~~d  325 (356)
                      |+|+..+++++..+|
T Consensus       381 Wnp~ePW~I~SvaeD  395 (422)
T KOG0264|consen  381 WNPNEPWTIASVAED  395 (422)
T ss_pred             CCCCCCeEEEEecCC
Confidence            999999988887777

>KOG0274|consensus

Probab=99.97  E-value=2.2e-29  Score=216.78  Aligned_cols=253  Identities=20%  Similarity=0.268  Sum_probs=209.3

Q ss_pred             CCCCCCceEE-eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE
Q psy12911         15 TPNPNKDFEV-VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM   93 (356)
Q Consensus        15 ~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~   93 (356)
                      +..+...+.. +.||.+.|.+++|..-+   .+|++|+.|.+++|||+.+  ......+.+|...|.++...  ..++++
T Consensus       234 ~~~~~~~i~~~l~GH~g~V~~l~~~~~~---~~lvsgS~D~t~rvWd~~s--g~C~~~l~gh~stv~~~~~~--~~~~~s  306 (537)
T KOG0274|consen  234 DLNNGYLILTRLVGHFGGVWGLAFPSGG---DKLVSGSTDKTERVWDCST--GECTHSLQGHTSSVRCLTID--PFLLVS  306 (537)
T ss_pred             ecccceEEEeeccCCCCCceeEEEecCC---CEEEEEecCCcEEeEecCC--CcEEEEecCCCceEEEEEcc--CceEee
Confidence            3334445555 89999999999998855   8999999999999999887  34558899999999999875  457888


Q ss_pred             EcCCCeEEEEEcCCCceeeecc-cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCC-
Q psy12911         94 AGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDY-  170 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~-  170 (356)
                      |+.|.+|++|++.++..+.+.. |.++|+++..+    +.++++|+.|++|++||+.++++++++.+|. .+.++.+.+ 
T Consensus       307 gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~  382 (537)
T KOG0274|consen  307 GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE  382 (537)
T ss_pred             ccCCceEEEEeccCcceEEEeccccccEEEEEec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc
Confidence            9999999999999999998555 99999999974    7899999999999999999999999999987 577778888 


Q ss_pred             CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee-e
Q psy12911        171 PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC-H  249 (356)
Q Consensus       171 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~  249 (356)
                      +.++.|+.|++|++||+++... .......|..-+..+.+.      ...+++++.|+.|++||....  ..+.++.+ |
T Consensus       383 ~~~~Sgs~D~~IkvWdl~~~~~-c~~tl~~h~~~v~~l~~~------~~~Lvs~~aD~~Ik~WD~~~~--~~~~~~~~~~  453 (537)
T KOG0274|consen  383 NRLLSGSLDTTIKVWDLRTKRK-CIHTLQGHTSLVSSLLLR------DNFLVSSSADGTIKLWDAEEG--ECLRTLEGRH  453 (537)
T ss_pred             ceEEeeeeccceEeecCCchhh-hhhhhcCCcccccccccc------cceeEeccccccEEEeecccC--ceeeeeccCC
Confidence            8999999999999999998731 122222444555555444      458999999999999999776  67777777 4


Q ss_pred             cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE  300 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  300 (356)
                      ..           .|..+++.  ...+++++.||.+++||++++++...+-
T Consensus       454 ~~-----------~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~  491 (537)
T KOG0274|consen  454 VG-----------GVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLL  491 (537)
T ss_pred             cc-----------cEEEeecC--cceEEEEecCCeeEEEecccCchhhhhh
Confidence            44           78888875  4688899999999999999999888763

>KOG0283|consensus

Probab=99.97  E-value=7.6e-30  Score=217.66  Aligned_cols=244  Identities=14%  Similarity=0.279  Sum_probs=195.0

Q ss_pred             eeec-cCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC--------------------------------C--------
Q psy12911         70 KSMQ-GMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS--------------------------------N--------  108 (356)
Q Consensus        70 ~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--------------------------------~--------  108 (356)
                      +.+. .|.+.|+++.||+||+|||+||.|+.|+||.+..                                .        
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            4455 8999999999999999999999999999998765                                0        


Q ss_pred             --------------------ceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEe
Q psy12911        109 --------------------QSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCAD  167 (356)
Q Consensus       109 --------------------~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  167 (356)
                                          ++++ +.+|.+.|.++.|+  . .++|++++.|.+||+|++...+++..|.+..-+.|+.
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--K-n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa  416 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--K-NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA  416 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccc--c-CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence                                0112 46899999999996  4 4689999999999999999999999999999888877


Q ss_pred             cCC---CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911        168 VDY---PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF  244 (356)
Q Consensus       168 ~~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  244 (356)
                      +.+   +++++|+-|+.++||++...+.....   ....-|+++++.|+    |...++|+.+|.+++|+..........
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~---Dl~~lITAvcy~Pd----Gk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWN---DLRDLITAVCYSPD----GKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeeh---hhhhhheeEEeccC----CceEEEEEeccEEEEEEccCCeEEEee
Confidence            765   59999999999999999876533222   34578999999999    899999999999999999776433222


Q ss_pred             eeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcceecCCCCCCcc--ceEEEEECCCCCEEEEE
Q psy12911        245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDARTKLKPSEAMDM--SISTCALNHNGQIFAYA  321 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~  321 (356)
                      .+..+...    ...+. .|+.+.|.|.. ..|++.+.|..|||+|.++..++..|+++..  .=....|+.||++|+++
T Consensus       490 ~I~~~~~K----k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~  564 (712)
T KOG0283|consen  490 HIRLHNKK----KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA  564 (712)
T ss_pred             eEeeccCc----cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence            33333221    11111 69999999854 4577777999999999998899999987643  34567899999999999


Q ss_pred             eccCCcC
Q psy12911        322 VSYDWSK  328 (356)
Q Consensus       322 s~~d~~~  328 (356)
                      +.|-|.-
T Consensus       565 seDs~VY  571 (712)
T KOG0283|consen  565 SEDSWVY  571 (712)
T ss_pred             ecCceEE
Confidence            9655443

>KOG0308|consensus

Probab=99.97  E-value=1.5e-30  Score=215.55  Aligned_cols=256  Identities=18%  Similarity=0.250  Sum_probs=210.9

Q ss_pred             CCCCCee---EEEecCCCCCceEEEEEeCCCeEEEEeccCCCc----eeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         27 PPEDSIS---CMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK----TIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        27 ~h~~~V~---~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      .|...|.   .+..+..+  +++|++|+.||.|++|++.....    .....++.|...|+.+....+++.|+++|.|-+
T Consensus        19 qn~~~v~~~~~Lq~da~~--~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtT   96 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPN--GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTT   96 (735)
T ss_pred             hccccccchhhccccCCC--CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCce
Confidence            4556666   55555544  37899999999999999876432    235678899999999999999999999999999


Q ss_pred             EEEEEcCCCc--eee-ecccCCCeeEEEE-EeCCCCCeEEEEECCCeEEEEeCCCCC--ceEEEeCCCeeEEEecCCCeE
Q psy12911        100 VKCWDLASNQ--SMQ-VAQHDAPVKTCHW-IKAPNYTCLMTGSWDKTLKFWDLRTPQ--PIMTINLPERCYCADVDYPLA  173 (356)
Q Consensus       100 i~vwd~~~~~--~~~-~~~~~~~v~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~  173 (356)
                      |++|+...+.  +.. +..|...|.|+++ .  ++..++++|+-|+.|.+||+.++.  .+.+++.-.            
T Consensus        97 VK~W~~~~~~~~c~stir~H~DYVkcla~~a--k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t------------  162 (735)
T KOG0308|consen   97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIA--KNNELVASGGLDRKIFLWDINTGTATLVASFNNVT------------  162 (735)
T ss_pred             EEEeecccCcchhHhhhhcccchheeeeecc--cCceeEEecCCCccEEEEEccCcchhhhhhccccc------------
Confidence            9999998774  333 6789999999999 5  888999999999999999999873  333332100            


Q ss_pred             EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911        174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG  253 (356)
Q Consensus       174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  253 (356)
                                          ...........+.+++..+.    +..++.|+.++.+++||.+..  +.+..+.+|..  
T Consensus       163 --------------------~~sl~sG~k~siYSLA~N~t----~t~ivsGgtek~lr~wDprt~--~kimkLrGHTd--  214 (735)
T KOG0308|consen  163 --------------------VNSLGSGPKDSIYSLAMNQT----GTIIVSGGTEKDLRLWDPRTC--KKIMKLRGHTD--  214 (735)
T ss_pred             --------------------cccCCCCCccceeeeecCCc----ceEEEecCcccceEEeccccc--cceeeeecccc--
Confidence                                01111145677889999888    789999999999999999877  77888999998  


Q ss_pred             CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccC
Q psy12911        254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHN  333 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~  333 (356)
                               .|..+..++||..+++++.||+|++||+...+++.++..|...|+++.-+|+-.++.+|+.|+....-.+.
T Consensus       215 ---------NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  215 ---------NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             ---------ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence                     89999999999999999999999999999999999999999999999999999999999987744444444


Q ss_pred             CC
Q psy12911        334 NP  335 (356)
Q Consensus       334 ~~  335 (356)
                      ++
T Consensus       286 n~  287 (735)
T KOG0308|consen  286 NP  287 (735)
T ss_pred             Cc
Confidence            44

>KOG0973|consensus

Probab=99.97  E-value=3e-29  Score=219.49  Aligned_cols=257  Identities=19%  Similarity=0.246  Sum_probs=206.2

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccC----------CC------ceeeeeeccCCcceeE
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEP----------NG------KTIPKSMQGMSEPVLD   81 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~----------~~------~~~~~~~~~~~~~v~~   81 (356)
                      -.+.+.....|.+.|+|+.|+|||   ++||+|+.|+.|.||+...          ++      ......+.+|...|..
T Consensus        58 l~k~l~~m~~h~~sv~CVR~S~dG---~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~D  134 (942)
T KOG0973|consen   58 LPKHLCTMDDHDGSVNCVRFSPDG---SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLD  134 (942)
T ss_pred             cchhheeeccccCceeEEEECCCC---CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccce
Confidence            345566778899999999999999   9999999999999999873          00      2345678899999999


Q ss_pred             EEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC
Q psy12911         82 VAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP  160 (356)
Q Consensus        82 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  160 (356)
                      ++|+|++.+|++++.|++|.+|+..+.+.+. +.+|.+.|..+.|.  |-|++|++-+.|++|++|++.+....+.+..+
T Consensus       135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~D--P~Gky~ASqsdDrtikvwrt~dw~i~k~It~p  212 (942)
T KOG0973|consen  135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWD--PIGKYFASQSDDRTLKVWRTSDWGIEKSITKP  212 (942)
T ss_pred             eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEEC--CccCeeeeecCCceEEEEEcccceeeEeeccc
Confidence            9999999999999999999999999998776 88999999999999  99999999999999999998877777777654


Q ss_pred             C---------eeEEEecCCCeEEEEe----cCCeEEEEeCCCCccccccccCcccccceEEEeecCC-CC--------CC
Q psy12911        161 E---------RCYCADVDYPLAVVGT----AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDK-KK--------QP  218 (356)
Q Consensus       161 ~---------~~~~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~--------~~  218 (356)
                      .         .-+.+++++.+|++..    ...++.|.+-.+.....  ....|..++.+++|+|.- +.        .+
T Consensus       213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~--~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~  290 (942)
T KOG0973|consen  213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDK--DLVGHSAPVEVVRFNPKLFERNNKNGTSTQP  290 (942)
T ss_pred             hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeee--eeecCCCceEEEEeChHHhccccccCCccCC
Confidence            3         2456777888887753    34577777765543322  233578899999999861 10        01


Q ss_pred             ----CeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc
Q psy12911        219 ----AGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       219 ----~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~  293 (356)
                          ..+++|+.|+.|.||.....  +++.....-..          ..|..++|+|||..|++++.||+|.+..++..
T Consensus       291 ~~~y~i~AvgSqDrSlSVW~T~~~--RPl~vi~~lf~----------~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  291 NCYYCIAAVGSQDRSLSVWNTALP--RPLFVIHNLFN----------KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             CcceEEEEEecCCccEEEEecCCC--Cchhhhhhhhc----------CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence                26899999999999998544  44443322111          17999999999999999999999999998753

>KOG0639|consensus

Probab=99.97  E-value=1.3e-29  Score=204.32  Aligned_cols=276  Identities=13%  Similarity=0.234  Sum_probs=227.3

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc-eeeeeecc--CCcceeEEEEccCCCeEEEEcCC
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK-TIPKSMQG--MSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      .+.++ .|..-|.++.++...   ++++||+ .|.|+|||+...+. ..+..+..  -..-|.++...|||+.|++|+.-
T Consensus       412 q~~tL-~HGEvVcAvtIS~~t---rhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea  486 (705)
T KOG0639|consen  412 QINTL-AHGEVVCAVTISNPT---RHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA  486 (705)
T ss_pred             hhhhh-ccCcEEEEEEecCCc---ceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc
Confidence            33444 589999999999887   8999998 57899999976442 22233322  35679999999999999999999


Q ss_pred             CeEEEEEcCCCceee---ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEecCCC
Q psy12911         98 KTVKCWDLASNQSMQ---VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCADVDYP  171 (356)
Q Consensus        98 g~i~vwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~  171 (356)
                      .++.|||+.......   +....-..++++.+  ||.++.+++..||.|.|||+.+...++.|+++.   .++.++.++.
T Consensus       487 stlsiWDLAapTprikaeltssapaCyALa~s--pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt  564 (705)
T KOG0639|consen  487 STLSIWDLAAPTPRIKAELTSSAPACYALAIS--PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT  564 (705)
T ss_pred             ceeeeeeccCCCcchhhhcCCcchhhhhhhcC--CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc
Confidence            999999998765432   33333457788888  999999999999999999999999999999876   3555666688


Q ss_pred             eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS  251 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  251 (356)
                      .|-+|+-|++++.||++++.+...   ..+..+|.++..+|.    +.++++|-.++.+.|.....   ...+.+..|..
T Consensus       565 klWTGGlDntvRcWDlregrqlqq---hdF~SQIfSLg~cP~----~dWlavGMens~vevlh~sk---p~kyqlhlheS  634 (705)
T KOG0639|consen  565 KLWTGGLDNTVRCWDLREGRQLQQ---HDFSSQIFSLGYCPT----GDWLAVGMENSNVEVLHTSK---PEKYQLHLHES  634 (705)
T ss_pred             eeecCCCccceeehhhhhhhhhhh---hhhhhhheecccCCC----ccceeeecccCcEEEEecCC---ccceeeccccc
Confidence            999999999999999998764432   245678999999999    88999999999988876654   34566667776


Q ss_pred             CCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                                 .|.++.|.+.|+++++.+.|..+..|.+.-|..+...+ ....|.++.+|.|.++|++||+|.
T Consensus       635 -----------cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  635 -----------CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             -----------EEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCc
Confidence                       89999999999999999999999999999888877766 356899999999999999999863

>KOG2055|consensus

Probab=99.97  E-value=1.3e-28  Score=196.36  Aligned_cols=279  Identities=14%  Similarity=0.184  Sum_probs=227.8

Q ss_pred             CCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCC-eEEEEcCCCeEEEEE
Q psy12911         26 SPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT-KVFMAGCDKTVKCWD  104 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd  104 (356)
                      ....+.|+++.|+|..   .+|++++.|++++||.++......++.+.--..+|.+++|.|+|. .+++++....++.||
T Consensus       210 ~ps~~~I~sv~FHp~~---plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD  286 (514)
T KOG2055|consen  210 HPSHGGITSVQFHPTA---PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD  286 (514)
T ss_pred             CcCcCCceEEEecCCC---ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence            3456799999999998   999999999999999998755666677777788999999999999 889999999999999


Q ss_pred             cCCCceeee---cccC-CCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCee--EEEecCCCeEEEEec
Q psy12911        105 LASNQSMQV---AQHD-APVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERC--YCADVDYPLAVVGTA  178 (356)
Q Consensus       105 ~~~~~~~~~---~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  178 (356)
                      +.+.+...+   .++. ..+.....+  +++++|+..+..|.|.+....+++.+.+++.+..+  ++++.++..+++++.
T Consensus       287 le~ak~~k~~~~~g~e~~~~e~FeVS--hd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~  364 (514)
T KOG2055|consen  287 LETAKVTKLKPPYGVEEKSMERFEVS--HDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGG  364 (514)
T ss_pred             ccccccccccCCCCcccchhheeEec--CCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcC
Confidence            999887653   3333 356777888  99999999999999999999999999999988765  455556678999999


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC----CCCCCCcceeeeecCCCC
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN----PANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~----~~~~~~~~~~~~~~~~~~  254 (356)
                      +|.|.+||++.+....+... .-.-.-++++.+++    +.++|+|+..|.|.|||.+    ...++++..+..-..   
T Consensus       365 ~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~n----g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt---  436 (514)
T KOG2055|consen  365 TGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLN----GSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT---  436 (514)
T ss_pred             CceEEEEecCCcceEEEEee-cCccceeeeeecCC----CceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe---
Confidence            99999999999854433333 22234477888888    7899999999999999964    345577777766555   


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcC--CCeEEEEEcCcceecCCCCCC---ccceEEEEECCCCCEEEEEeccC
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGS--EGTFSFWDKDARTKLKPSEAM---DMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                              .|+++.|+||+++||.++.  +..+++-.+.+......+...   -+.|+|++|||.|-+||.|...+
T Consensus       437 --------~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g  504 (514)
T KOG2055|consen  437 --------AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG  504 (514)
T ss_pred             --------eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCC
Confidence                    8999999999999887764  578999998887776666533   35789999999999999997554

>KOG0643|consensus

Probab=99.97  E-value=1.1e-28  Score=183.60  Aligned_cols=236  Identities=17%  Similarity=0.167  Sum_probs=200.1

Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeC
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL  148 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~  148 (356)
                      ..+++|..+++.+.++.+|.+|++++.|.++.||-...|+.+- +.+|++.|+++...  .+.+.+++|+.|.++++||+
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did--~~s~~liTGSAD~t~kLWDv   81 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDID--WDSKHLITGSADQTAKLWDV   81 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEec--CCcceeeeccccceeEEEEc
Confidence            3578999999999999999999999999999999887777775 89999999999999  99999999999999999999


Q ss_pred             CCCCceEEEeCCCeeEE--EecCCCeEEEEec-----CCeEEEEeCCCCc------cccccccCcccccceEEEeecCCC
Q psy12911        149 RTPQPIMTINLPERCYC--ADVDYPLAVVGTA-----GRGIVLYQLEGKP------QEFKKTESPLKYQNRCIAIFRDKK  215 (356)
Q Consensus       149 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----d~~i~i~d~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~  215 (356)
                      ++|+.+..++.+..+..  +++.++++++...     .+.|.++|++...      .+...+. .....++.+.|.|.  
T Consensus        82 ~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~l--  158 (327)
T KOG0643|consen   82 ETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGPL--  158 (327)
T ss_pred             CCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeeccc--
Confidence            99999999998876554  4555666666544     4789999998543      1122222 23478899999999  


Q ss_pred             CCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee
Q psy12911        216 KQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK  295 (356)
Q Consensus       216 ~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~  295 (356)
                        +..+++|..+|.|.+||.+.+. +.+..-..|..           .|+.+.++||..++++++.|.+-++||..+-+.
T Consensus       159 --~~~ii~Ghe~G~is~~da~~g~-~~v~s~~~h~~-----------~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v  224 (327)
T KOG0643|consen  159 --GETIIAGHEDGSISIYDARTGK-ELVDSDEEHSS-----------KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV  224 (327)
T ss_pred             --CCEEEEecCCCcEEEEEcccCc-eeeechhhhcc-----------ccccccccCCcceEEecccCccceeeeccceee
Confidence              8899999999999999998753 34445556665           899999999999999999999999999999999


Q ss_pred             cCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        296 LKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       296 ~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ++++. -..+|++.+++|--.+++.|++.+
T Consensus       225 ~Kty~-te~PvN~aaisP~~d~VilgGGqe  253 (327)
T KOG0643|consen  225 LKTYT-TERPVNTAAISPLLDHVILGGGQE  253 (327)
T ss_pred             EEEee-ecccccceecccccceEEecCCce
Confidence            98887 367999999999999999998755

>KOG0301|consensus

Probab=99.97  E-value=5.4e-29  Score=207.86  Aligned_cols=275  Identities=19%  Similarity=0.284  Sum_probs=225.5

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeE-EEEcc-CCCeEEEEcC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLD-VAWID-DGTKVFMAGC   96 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~-~~~s~-~~~~l~~~~~   96 (356)
                      .+..+.+.+|+..|..+++.+.    ..+++++.||++++|+-...+......+.+|.+-|.. +++.+ ++-.+++|+.
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~----~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~   79 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDG----VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGM   79 (745)
T ss_pred             ceeEEEeccCccchheeEecCC----eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecc
Confidence            4556789999999999998877    4899999999999999876555555677888888877 88876 5556999999


Q ss_pred             CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEEe-cCCCeE
Q psy12911         97 DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCAD-VDYPLA  173 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~~~  173 (356)
                      |.+|.+|......+.. +.+|...|.++...  .++. +++|+.|.++++|-  .+++...+++|.. ++++. +..+.+
T Consensus        80 D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~--~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~~~  154 (745)
T KOG0301|consen   80 DTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG--EDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPENTY  154 (745)
T ss_pred             cceEEEEecCCCCchhhhhccccceeeeecC--CcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCCcE
Confidence            9999999999998877 89999999999976  6665 99999999999995  5666777887764 44433 333589


Q ss_pred             EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911        174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG  253 (356)
Q Consensus       174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  253 (356)
                      ++|+.|.+|++|.-.+.    ......|...|+.+++.++     ..+++++.||.|++|+++.   ..+.++.+|+.  
T Consensus       155 vTgsaDKtIklWk~~~~----l~tf~gHtD~VRgL~vl~~-----~~flScsNDg~Ir~w~~~g---e~l~~~~ghtn--  220 (745)
T KOG0301|consen  155 VTGSADKTIKLWKGGTL----LKTFSGHTDCVRGLAVLDD-----SHFLSCSNDGSIRLWDLDG---EVLLEMHGHTN--  220 (745)
T ss_pred             EeccCcceeeeccCCch----hhhhccchhheeeeEEecC-----CCeEeecCCceEEEEeccC---ceeeeeeccce--
Confidence            99999999999987442    2233358889999999987     4799999999999999954   67888999988  


Q ss_pred             CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcC
Q psy12911        254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSK  328 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~  328 (356)
                               -|.+++..+++..++++++|++++||+..  ++.+.+.-....|+++.+-++|..+ +|++|+..+
T Consensus       221 ---------~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIv-vg~SDG~Vr  283 (745)
T KOG0301|consen  221 ---------FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIV-VGGSDGRVR  283 (745)
T ss_pred             ---------EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEE-EeccCceEE
Confidence                     89999988888999999999999999987  7777777556689999999999855 455577443

>KOG0289|consensus

Probab=99.97  E-value=1e-28  Score=195.50  Aligned_cols=254  Identities=17%  Similarity=0.207  Sum_probs=214.2

Q ss_pred             CCCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE
Q psy12911         14 STPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM   93 (356)
Q Consensus        14 ~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~   93 (356)
                      .+....+.+.+++||...|+.+.|+|+.   ..+++++.|..|+||......  .......|.++|+.+..+|.|.||++
T Consensus       246 ~d~~s~q~l~~~~Gh~kki~~v~~~~~~---~~v~~aSad~~i~vws~~~~s--~~~~~~~h~~~V~~ls~h~tgeYlls  320 (506)
T KOG0289|consen  246 FDKPSNQILATLKGHTKKITSVKFHKDL---DTVITASADEIIRVWSVPLSS--EPTSSRPHEEPVTGLSLHPTGEYLLS  320 (506)
T ss_pred             EecchhhhhhhccCcceEEEEEEeccch---hheeecCCcceEEeecccccc--CccccccccccceeeeeccCCcEEEE
Confidence            3455567788899999999999999998   999999999999999998733  33567789999999999999999999


Q ss_pred             EcCCCeEEEEEcCCCceeeecccC---CCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEe
Q psy12911         94 AGCDKTVKCWDLASNQSMQVAQHD---APVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCAD  167 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~  167 (356)
                      ++.|++..+.|++++..+....+.   -.+++++|+  |||.+|.+|..||.|+|||+.++..+..|.+|..   .+.++
T Consensus       321 As~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH--pDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~Fs  398 (506)
T KOG0289|consen  321 ASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH--PDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFS  398 (506)
T ss_pred             ecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc--CCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEec
Confidence            999999999999999987754443   358999999  9999999999999999999999999999988763   44555


Q ss_pred             cCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911        168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK  247 (356)
Q Consensus       168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  247 (356)
                      -+|-++++++.|+.|++||+|.... ++.+.......+.++.|.+.    +.++++++.+=+|++++-.......+..+.
T Consensus       399 ENGY~Lat~add~~V~lwDLRKl~n-~kt~~l~~~~~v~s~~fD~S----Gt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~  473 (506)
T KOG0289|consen  399 ENGYWLATAADDGSVKLWDLRKLKN-FKTIQLDEKKEVNSLSFDQS----GTYLGIAGSDLQVYICKKKTKSWTEIKELA  473 (506)
T ss_pred             cCceEEEEEecCCeEEEEEehhhcc-cceeeccccccceeEEEcCC----CCeEEeecceeEEEEEecccccceeeehhh
Confidence            5666999999999999999998753 33333344457899999998    889999988877777776666666777777


Q ss_pred             eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        248 CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                      .|.+           ..+++.|..+.+++++++.|..++++.+
T Consensus       474 ~~sg-----------~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  474 DHSG-----------LSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             hccc-----------ccceeeecccceEEeeccchhheEEeec
Confidence            7776           7889999999999999999999988764

>KOG0288|consensus

Probab=99.97  E-value=1.3e-29  Score=199.40  Aligned_cols=244  Identities=19%  Similarity=0.308  Sum_probs=205.5

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      .+.++.|-.+.|++++|.+++   .++++++.|+.+++|++..  .....++.+|.+.|+++.|......+++|+.|.+|
T Consensus       211 ~~~tLaGs~g~it~~d~d~~~---~~~iAas~d~~~r~Wnvd~--~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRti  285 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFDSDN---KHVIAASNDKNLRLWNVDS--LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTI  285 (459)
T ss_pred             hhhhhhccCCCcceeeecCCC---ceEEeecCCCceeeeeccc--hhhhhhhcccccceeeehhhccccceeeccccchh
Confidence            556678888999999999999   9999999999999999987  56678999999999999999877779999999999


Q ss_pred             EEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEe--cCCCeEEEEec
Q psy12911        101 KCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCAD--VDYPLAVVGTA  178 (356)
Q Consensus       101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  178 (356)
                      ++||+....+.+..-..+.+.+|..+    ...+++|-.|++|++||+++..+..+...++.+.+++  +++..+++++.
T Consensus       286 K~WDl~k~~C~kt~l~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssR  361 (459)
T KOG0288|consen  286 KLWDLQKAYCSKTVLPGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSR  361 (459)
T ss_pred             hhhhhhhhheeccccccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecC
Confidence            99999998888766667778888764    4578999999999999999999999999988765554  55668899999


Q ss_pred             CCeEEEEeCCCCccccccc--cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911        179 GRGIVLYQLEGKPQEFKKT--ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG  256 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (356)
                      |.++.+.|+++........  ........+.+.|+|+    +.++++|+.||.|+||+...+  +....+.......   
T Consensus       362 Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd----~~YvaAGS~dgsv~iW~v~tg--KlE~~l~~s~s~~---  432 (459)
T KOG0288|consen  362 DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD----GSYVAAGSADGSVYIWSVFTG--KLEKVLSLSTSNA---  432 (459)
T ss_pred             CCceeeeecccccEEEEeeccccccccccceeEECCC----CceeeeccCCCcEEEEEccCc--eEEEEeccCCCCc---
Confidence            9999999999876433222  2223355889999999    899999999999999999877  5555554443311   


Q ss_pred             CcccccceEEEEEeCCCCEEEEEcCCCeEEEE
Q psy12911        257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFW  288 (356)
Q Consensus       257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iw  288 (356)
                            .|++++|+|.|..|++++.++.+.+|
T Consensus       433 ------aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  433 ------AITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ------ceEEEEEcCCCchhhcccCCcceEec
Confidence                  59999999999999999999999999

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=7.3e-28  Score=207.13  Aligned_cols=234  Identities=15%  Similarity=0.173  Sum_probs=177.4

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCce---------e--eeeeccCCcceeEEEEcc-CCCeEEEEc
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKT---------I--PKSMQGMSEPVLDVAWID-DGTKVFMAG   95 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~---------~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~   95 (356)
                      |-..|.....++++   ..+++++.+..+..|+...+...         .  ...+.+|.+.|.+++|+| ++++|++|+
T Consensus        19 ~~~~i~~~~~~~d~---~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS   95 (493)
T PTZ00421         19 HFLNVTPSTALWDC---SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTAS   95 (493)
T ss_pred             ceeccccccccCCC---CCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEe
Confidence            34566666777776   56777777777777775442110         0  124678999999999999 888999999


Q ss_pred             CCCeEEEEEcCCCc--------eeeecccCCCeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEE
Q psy12911         96 CDKTVKCWDLASNQ--------SMQVAQHDAPVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCA  166 (356)
Q Consensus        96 ~dg~i~vwd~~~~~--------~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  166 (356)
                      .|++|++||+.++.        ...+.+|...|.+++|+  |++ .+|++++.|++|+|||+++++.+..+..       
T Consensus        96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~--P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~-------  166 (493)
T PTZ00421         96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFH--PSAMNVLASAGADMVVNVWDVERGKAVEVIKC-------  166 (493)
T ss_pred             CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeC--cCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC-------
Confidence            99999999997653        22377899999999999  654 6899999999999999988766555432       


Q ss_pred             ecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee
Q psy12911        167 DVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       167 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~  246 (356)
                                                        |...|.+++|+|+    +..+++++.|+.|++||++..  +.+.++
T Consensus       167 ----------------------------------h~~~V~sla~spd----G~lLatgs~Dg~IrIwD~rsg--~~v~tl  206 (493)
T PTZ00421        167 ----------------------------------HSDQITSLEWNLD----GSLLCTTSKDKKLNIIDPRDG--TIVSSV  206 (493)
T ss_pred             ----------------------------------CCCceEEEEEECC----CCEEEEecCCCEEEEEECCCC--cEEEEE
Confidence                                              3456899999999    789999999999999999865  556677


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCCCEEEEEc----CCCeEEEEEcCcce-ecCCCCCC-ccceEEEEECCCCCEEEE
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG----SEGTFSFWDKDART-KLKPSEAM-DMSISTCALNHNGQIFAY  320 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~----~dg~i~iwd~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~  320 (356)
                      .+|...          .+..+.|.+++..+++++    .|+.|++||+++.. ++.....+ ...+....|++++++|++
T Consensus       207 ~~H~~~----------~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~l  276 (493)
T PTZ00421        207 EAHASA----------KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYI  276 (493)
T ss_pred             ecCCCC----------cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEE
Confidence            777641          245678999887777654    47999999998654 33333322 345666789999999999


Q ss_pred             Eec
Q psy12911        321 AVS  323 (356)
Q Consensus       321 ~s~  323 (356)
                      ++.
T Consensus       277 ggk  279 (493)
T PTZ00421        277 GSK  279 (493)
T ss_pred             EEe
Confidence            874

>KOG1539|consensus

Probab=99.97  E-value=1.3e-27  Score=203.60  Aligned_cols=289  Identities=16%  Similarity=0.194  Sum_probs=219.8

Q ss_pred             CCCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCe-EE
Q psy12911         14 STPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK-VF   92 (356)
Q Consensus        14 ~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~   92 (356)
                      .+-...+.+.+++++...|+++.=+|--   +.+|.|..+|+|.|+++..+  ..+..++...++|++++|..||+. ++
T Consensus       187 ~Nvrt~K~v~~f~~~~s~IT~ieqsPaL---DVVaiG~~~G~ViifNlK~d--kil~sFk~d~g~VtslSFrtDG~p~la  261 (910)
T KOG1539|consen  187 WNVRTGKVVYTFQEFFSRITAIEQSPAL---DVVAIGLENGTVIIFNLKFD--KILMSFKQDWGRVTSLSFRTDGNPLLA  261 (910)
T ss_pred             EEeccCcEEEEecccccceeEeccCCcc---eEEEEeccCceEEEEEcccC--cEEEEEEccccceeEEEeccCCCeeEE
Confidence            3445667888899999999999999998   99999999999999999983  444667644699999999999985 55


Q ss_pred             EEcCCCeEEEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-------------------
Q psy12911         93 MAGCDKTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-------------------  151 (356)
Q Consensus        93 ~~~~dg~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------------------  151 (356)
                      +|+..|.+.+||++..+.+.  ...|.+.|..+.|.  +....+++++.|+.+++|=..++                   
T Consensus       262 s~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl--~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~  339 (910)
T KOG1539|consen  262 SGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFL--PGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSC  339 (910)
T ss_pred             eccCCceEEEEEcCCCeeeeeeeccccCCcccceec--CCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchh
Confidence            66667999999999877654  23466666666666  55566666666665554421100                   


Q ss_pred             -----------------------------------C---------------------ceEEEe-----------------
Q psy12911        152 -----------------------------------Q---------------------PIMTIN-----------------  158 (356)
Q Consensus       152 -----------------------------------~---------------------~~~~~~-----------------  158 (356)
                                                         +                     ++..+.                 
T Consensus       340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~  419 (910)
T KOG1539|consen  340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHK  419 (910)
T ss_pred             eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEec
Confidence                                               0                     000000                 


Q ss_pred             -----------------------------CCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccc-cCcccccceEE
Q psy12911        159 -----------------------------LPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT-ESPLKYQNRCI  208 (356)
Q Consensus       159 -----------------------------~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~i~~~  208 (356)
                                                   ....+++++..|++.+.|+..|.|-+|++.++....... ...|+.+|+.+
T Consensus       420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl  499 (910)
T KOG1539|consen  420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL  499 (910)
T ss_pred             CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEE
Confidence                                         001256677788899999999999999999885433332 34678899999


Q ss_pred             EeecCCCCCCCeEEEeecCCeEEEEEeCCCCC---------------------------------------CCcceeeee
Q psy12911        209 AIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP---------------------------------------KDNFTFKCH  249 (356)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~---------------------------------------~~~~~~~~~  249 (356)
                      +...-    +..+++++.+|-+.+|++.....                                       +.++.+.+|
T Consensus       500 a~D~~----n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh  575 (910)
T KOG1539|consen  500 AVDGT----NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH  575 (910)
T ss_pred             EecCC----CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc
Confidence            99887    78899999999999999976541                                       122233344


Q ss_pred             cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ..           .|++++|||||++|++++.|++|++||+.++.++-.+. -..+++++.|||+|.+||++..|.
T Consensus       576 ~n-----------ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  576 GN-----------RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             cc-----------ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecC
Confidence            43           89999999999999999999999999999999887664 367889999999999999998764

>KOG0641|consensus

Probab=99.97  E-value=3.4e-27  Score=171.89  Aligned_cols=250  Identities=19%  Similarity=0.251  Sum_probs=201.2

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc---eeeeeeccCCcceeEEEEcc----CCCeE
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK---TIPKSMQGMSEPVLDVAWID----DGTKV   91 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~s~----~~~~l   91 (356)
                      .-..+.-+.|++.|.|.+|+|+|   ++|++|+.|.+|++.-.+....   -....+.-|.+.|..++|..    .+..|
T Consensus        79 ~v~~kr~khhkgsiyc~~ws~~g---eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il  155 (350)
T KOG0641|consen   79 SVLCKRNKHHKGSIYCTAWSPCG---ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAIL  155 (350)
T ss_pred             eEEeeeccccCccEEEEEecCcc---CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEE
Confidence            33445567899999999999999   9999999999999976654211   11234566999999999965    34567


Q ss_pred             EEEcC-CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--------
Q psy12911         92 FMAGC-DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--------  161 (356)
Q Consensus        92 ~~~~~-dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------  161 (356)
                      ++++. |..|++-|-..|+... +.+|++.|.++- +  -++-.+++|+.|.+|++||++-..++.++....        
T Consensus       156 ~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-s--wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gless  232 (350)
T KOG0641|consen  156 ASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-S--WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESS  232 (350)
T ss_pred             EecCCCcceEEEeecCCCCcceeecCCcccEEEEE-E--ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccc
Confidence            77654 7788888888888776 889999999874 4  678899999999999999999998888775321        


Q ss_pred             --eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC
Q psy12911        162 --RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN  239 (356)
Q Consensus       162 --~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~  239 (356)
                        ..+++++.+.++++|..|....+||++.+......  .+|...|.|+.|+|.    ..++++++.|..|++-|+...-
T Consensus       233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f--~phsadir~vrfsp~----a~yllt~syd~~ikltdlqgdl  306 (350)
T KOG0641|consen  233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF--HPHSADIRCVRFSPG----AHYLLTCSYDMKIKLTDLQGDL  306 (350)
T ss_pred             eeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee--CCCccceeEEEeCCC----ceEEEEecccceEEEeecccch
Confidence              36778888999999999999999999998654333  368889999999999    7899999999999999986542


Q ss_pred             C--CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        240 P--KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       240 ~--~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      .  -++.....|..           .+..+.|+|..--+++.+.|.++.+|-+.
T Consensus       307 a~el~~~vv~ehkd-----------k~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  307 AHELPIMVVAEHKD-----------KAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             hhcCceEEEEeccC-----------ceEEEEecCccceeeeccCcceEEEeccC
Confidence            2  23344555666           78899999999889999999999999764

>KOG1408|consensus

Probab=99.96  E-value=1.3e-27  Score=200.64  Aligned_cols=275  Identities=16%  Similarity=0.154  Sum_probs=216.6

Q ss_pred             eeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc-eeeeeeccCCcceeEEEEcc-C----------CCeEEEEcCCCe
Q psy12911         32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK-TIPKSMQGMSEPVLDVAWID-D----------GTKVFMAGCDKT   99 (356)
Q Consensus        32 V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~s~-~----------~~~l~~~~~dg~   99 (356)
                      -.++.|.+..   ..|.+.-.|..++|||++...+ .....+..|...|+.+.--| +          ...+.+++.|++
T Consensus       327 ~IA~~Fdet~---~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~T  403 (1080)
T KOG1408|consen  327 AIACQFDETT---DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGT  403 (1080)
T ss_pred             eeEEEecCCC---ceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCc
Confidence            3477899887   8899999999999999987432 12234456888888876654 1          235889999999


Q ss_pred             EEEEEcCCCc---ee-----------------------------------eecccCCCeeEEEEEeCCCCCeEEEEECCC
Q psy12911        100 VKCWDLASNQ---SM-----------------------------------QVAQHDAPVKTCHWIKAPNYTCLMTGSWDK  141 (356)
Q Consensus       100 i~vwd~~~~~---~~-----------------------------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  141 (356)
                      |++|++..+.   ..                                   ......-.+.+++.+  |++++|++|..-|
T Consensus       404 IRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS--p~gqhLAsGDr~G  481 (1080)
T KOG1408|consen  404 IRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS--PDGQHLASGDRGG  481 (1080)
T ss_pred             EEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC--CCcceecccCccC
Confidence            9999997631   00                                   011233468999999  9999999999999


Q ss_pred             eEEEEeCCCCCceEEEeCCC-eeEEEecCCC-----eEEEEecCCeEEEEeCCCCccccccccCcccccc----------
Q psy12911        142 TLKFWDLRTPQPIMTINLPE-RCYCADVDYP-----LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQN----------  205 (356)
Q Consensus       142 ~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i----------  205 (356)
                      ++++||+...+....++.|. .++|+.+..+     +|++++.|..|++||+..+-....... .|...|          
T Consensus       482 nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld-~HSssITsvKFa~~gl  560 (1080)
T KOG1408|consen  482 NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD-GHSSSITSVKFACNGL  560 (1080)
T ss_pred             ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc-ccccceeEEEEeecCC
Confidence            99999999988888888766 6888888764     789999999999999976533222222 233333          


Q ss_pred             ---------------------------------------eEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee
Q psy12911        206 ---------------------------------------RCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       206 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~  246 (356)
                                                             ..+++.|.    ..++++++.|..|+||++..+  +....|
T Consensus       561 n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~----~k~v~t~cQDrnirif~i~sg--Kq~k~F  634 (1080)
T KOG1408|consen  561 NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT----SKLVVTVCQDRNIRIFDIESG--KQVKSF  634 (1080)
T ss_pred             ceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC----cceEEEEecccceEEEecccc--ceeeee
Confidence                                                   44444444    678999999999999999877  667777


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCC
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDW  326 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~  326 (356)
                      ++..+.        .+....+...|.|.|||+.+.|.++.++|..+|+++.++.+|...|+.+.|.+|-++|++.++|++
T Consensus       635 Kgs~~~--------eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC  706 (1080)
T KOG1408|consen  635 KGSRDH--------EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC  706 (1080)
T ss_pred             cccccC--------CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence            765542        126778999999999999999999999999999999999999999999999999999999999883

>KOG2445|consensus

Probab=99.96  E-value=6.2e-27  Score=177.76  Aligned_cols=264  Identities=16%  Similarity=0.196  Sum_probs=200.3

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC--CceeeeeeccCCcceeEEEEcc--CCCeEEEEcCCCe
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN--GKTIPKSMQGMSEPVLDVAWID--DGTKVFMAGCDKT   99 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~   99 (356)
                      +..+|.+-|.|+.|.+.|   +.+|+|+.|++|+|||.+..  ...+....+.|.+.|..+.|.+  -|+.+|+++.|++
T Consensus         8 i~s~h~DlihdVs~D~~G---RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt   84 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYG---RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT   84 (361)
T ss_pred             cccCCcceeeeeeecccC---ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence            356899999999999999   99999999999999996442  2455567889999999999976  6899999999999


Q ss_pred             EEEEEcCCC-------c---eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecC
Q psy12911        100 VKCWDLASN-------Q---SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVD  169 (356)
Q Consensus       100 i~vwd~~~~-------~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (356)
                      +.||.-...       +   ...+....+.|+++.|.|..-|-.|++++.||.+|||+.-..-.+...+           
T Consensus        85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~-----------  153 (361)
T KOG2445|consen   85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT-----------  153 (361)
T ss_pred             eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch-----------
Confidence            999975321       1   1124567789999999987788899999999999999876544333332           


Q ss_pred             CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-----CeEEEEEeCCCC--CCC
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-----GRVAIQYVNPAN--PKD  242 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~~--~~~  242 (356)
                                       +...-.........+.....|+.|+|.. ....++++|+.+     +.++||..+...  ...
T Consensus       154 -----------------Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr-~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k  215 (361)
T KOG2445|consen  154 -----------------LQHEIQNVIDPPGKNKQPCFCVSWNPSR-MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK  215 (361)
T ss_pred             -----------------hhhhhhhccCCcccccCcceEEeecccc-ccCceEEEEcccCCccccceEEEEecCCcceeee
Confidence                             2211111111222345566888888653 235678888776     578888876543  345


Q ss_pred             cceeeeecCCCCCCCcccccceEEEEEeCCC----CEEEEEcCCCeEEEEEcCcc--------------------eecCC
Q psy12911        243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH----GTLATVGSEGTFSFWDKDAR--------------------TKLKP  298 (356)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~----~~l~s~~~dg~i~iwd~~~~--------------------~~~~~  298 (356)
                      +.++.+|..           +|+.++|.|+-    .+||+++.|| |+||.++..                    +.+..
T Consensus       216 va~L~d~~d-----------pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~  283 (361)
T KOG2445|consen  216 VAELPDHTD-----------PIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE  283 (361)
T ss_pred             ehhcCCCCC-----------cceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence            566777777           99999999963    6899999999 999998731                    24556


Q ss_pred             CCCCccceEEEEECCCCCEEEEEeccCCcCCCc
Q psy12911        299 SEAMDMSISTCALNHNGQIFAYAVSYDWSKGHE  331 (356)
Q Consensus       299 ~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~  331 (356)
                      +..|.+.|+.+.|.-.|..|++++.|+..+.+.
T Consensus       284 ~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  284 LDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             ccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence            789999999999999999999999888655443

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=6.1e-27  Score=202.44  Aligned_cols=221  Identities=13%  Similarity=0.178  Sum_probs=166.3

Q ss_pred             EeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC-CCeEEEEcCCCeEEEEEcCCCce---------eeecccCCC
Q psy12911         50 GSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD-GTKVFMAGCDKTVKCWDLASNQS---------MQVAQHDAP  119 (356)
Q Consensus        50 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~---------~~~~~~~~~  119 (356)
                      |+.++.|++|+...  ......+.+|.++|.+++|+|+ +.+|++|+.|++|++||+.++..         ..+.+|...
T Consensus        50 GG~~gvI~L~~~~r--~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~  127 (568)
T PTZ00420         50 GGLIGAIRLENQMR--KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK  127 (568)
T ss_pred             CCceeEEEeeecCC--CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence            55688999999866  3456788999999999999996 78999999999999999976421         135789999


Q ss_pred             eeEEEEEeCCCCCe-EEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCcccccccc
Q psy12911        120 VKTCHWIKAPNYTC-LMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE  198 (356)
Q Consensus       120 v~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  198 (356)
                      |.+++|+  |++.. |++++.|++|++||+++++.+..+.                                        
T Consensus       128 V~sVaf~--P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----------------------------------------  165 (568)
T PTZ00420        128 ISIIDWN--PMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----------------------------------------  165 (568)
T ss_pred             EEEEEEC--CCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----------------------------------------
Confidence            9999999  77765 5789999999999999876554432                                        


Q ss_pred             CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEE
Q psy12911        199 SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLAT  278 (356)
Q Consensus       199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s  278 (356)
                        +...+.+++|+|+    +..+++++.|+.|+|||++..  ..+.++.+|.+...      ...+....|++++.+|++
T Consensus       166 --~~~~V~Slswspd----G~lLat~s~D~~IrIwD~Rsg--~~i~tl~gH~g~~~------s~~v~~~~fs~d~~~IlT  231 (568)
T PTZ00420        166 --MPKKLSSLKWNIK----GNLLSGTCVGKHMHIIDPRKQ--EIASSFHIHDGGKN------TKNIWIDGLGGDDNYILS  231 (568)
T ss_pred             --cCCcEEEEEECCC----CCEEEEEecCCEEEEEECCCC--cEEEEEecccCCce------eEEEEeeeEcCCCCEEEE
Confidence              1235789999999    789999999999999999876  55677888875100      002333456789999998


Q ss_pred             EcCCC----eEEEEEcCc-ceecCCC--CCCccceEEEEECCCCCEEEEEeccCCcC
Q psy12911        279 VGSEG----TFSFWDKDA-RTKLKPS--EAMDMSISTCALNHNGQIFAYAVSYDWSK  328 (356)
Q Consensus       279 ~~~dg----~i~iwd~~~-~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~s~~d~~~  328 (356)
                      ++.|+    .|+|||+++ ++++..+  ..+.+.+......++|.++++|++|...+
T Consensus       232 tG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr  288 (568)
T PTZ00420        232 TGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR  288 (568)
T ss_pred             EEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence            87764    799999985 4445443  33344444455566799999998876433

>KOG0646|consensus

Probab=99.96  E-value=1.2e-27  Score=191.10  Aligned_cols=245  Identities=17%  Similarity=0.252  Sum_probs=190.6

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC-
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS-  107 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-  107 (356)
                      .++|.|++-+|+|   .+|+.|+..|.|++|.+.++  .++..+.+|=..|+++.|+.||.+|++|+.||.|.+|.+.. 
T Consensus        81 Pg~v~al~s~n~G---~~l~ag~i~g~lYlWelssG--~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   81 PGPVHALASSNLG---YFLLAGTISGNLYLWELSSG--ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             ccceeeeecCCCc---eEEEeecccCcEEEEEeccc--cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee
Confidence            4689999999999   88888889999999999983  45567789999999999999999999999999999998642 


Q ss_pred             --------Cceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe--eEEEecCCCeEEEE
Q psy12911        108 --------NQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER--CYCADVDYPLAVVG  176 (356)
Q Consensus       108 --------~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  176 (356)
                              -++.. +..|.-+|+++...+.+...++++++.|.++++||+..+..+.++..+..  ++.+++....+++|
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiG  235 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIG  235 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEec
Confidence                    12333 77899999999998655567899999999999999999999998887764  44555556677888


Q ss_pred             ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG  256 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (356)
                      +.+|.|.+.++.....        ....+.                       .+.++...   .....+.+|...    
T Consensus       236 t~~G~I~~~~~~~~~~--------~~~~v~-----------------------~k~~~~~~---t~~~~~~Gh~~~----  277 (476)
T KOG0646|consen  236 TEEGKIFQNLLFKLSG--------QSAGVN-----------------------QKGRHEEN---TQINVLVGHENE----  277 (476)
T ss_pred             CCcceEEeeehhcCCc--------cccccc-----------------------cccccccc---ceeeeeccccCC----
Confidence            8888887777654310        000111                       11111111   234445555542    


Q ss_pred             CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEE
Q psy12911        257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                           .+|+|++++-||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|-.+-...+
T Consensus       278 -----~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~  337 (476)
T KOG0646|consen  278 -----SAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILF  337 (476)
T ss_pred             -----cceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecc
Confidence                 279999999999999999999999999999999999988778899999997765544443

>KOG0299|consensus

Probab=99.96  E-value=3.1e-27  Score=188.47  Aligned_cols=239  Identities=18%  Similarity=0.299  Sum_probs=189.2

Q ss_pred             CCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEc
Q psy12911         26 SPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL  105 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  105 (356)
                      ++|...|.+++.++||   ++||+|+.|..|.||+.++  ...++.+.+|.+.|.+++|-.....|++++.|+.|++|++
T Consensus       199 ~~h~keil~~avS~Dg---kylatgg~d~~v~Iw~~~t--~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~  273 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDG---KYLATGGRDRHVQIWDCDT--LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSI  273 (479)
T ss_pred             ccccceeEEEEEcCCC---cEEEecCCCceEEEecCcc--cchhhcccccccceeeeeeecCccceeeeecCCceEEEeh
Confidence            4899999999999999   9999999999999999998  5566789999999999999988889999999999999999


Q ss_pred             CCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC-CeeEEEecC-CCeEEEEecCCeE
Q psy12911        106 ASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP-ERCYCADVD-YPLAVVGTAGRGI  182 (356)
Q Consensus       106 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~d~~i  182 (356)
                      +....+. +++|.+.|.+|...  ..++.+-+|+.|+++++|++..... ..+.++ ..+-|+.+- ...+++|+.+|.|
T Consensus       274 ~~~s~vetlyGHqd~v~~IdaL--~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In~~HfvsGSdnG~I  350 (479)
T KOG0299|consen  274 DQLSYVETLYGHQDGVLGIDAL--SRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFINDEHFVSGSDNGSI  350 (479)
T ss_pred             hHhHHHHHHhCCccceeeechh--cccceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEecccceeeccCCceE
Confidence            9887776 89999999999987  7777777777999999999944433 333433 355555554 4689999999999


Q ss_pred             EEEeCCCCccccccccC----------cccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC--CCCCcceeeeec
Q psy12911        183 VLYQLEGKPQEFKKTES----------PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA--NPKDNFTFKCHR  250 (356)
Q Consensus       183 ~i~d~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~  250 (356)
                      .+|++......+.....          ..+..|++++..|.    .+++++|+.+|.|++|-+..+  ...++..+... 
T Consensus       351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~----sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~-  425 (479)
T KOG0299|consen  351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG----SDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV-  425 (479)
T ss_pred             EEeeecccCceeEeeccccccCCccccccccceeeeEeccc----CceEEecCCCCceEEEEecCCccccceeeecccc-
Confidence            99999887543332210          11236889999999    789999999999999999765  22344444422 


Q ss_pred             CCCCCCCcccccceEEEEEeCCCCEEEEE-cCCCeEEEE
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHGTLATV-GSEGTFSFW  288 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~-~~dg~i~iw  288 (356)
                      +           .|++++|+++|+.|++| +....+--|
T Consensus       426 G-----------fVNsl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  426 G-----------FVNSLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             c-----------EEEEEEEccCCCEEEEeccccccccee
Confidence            2           79999999999866555 444444344

>KOG1332|consensus

Probab=99.96  E-value=8.4e-28  Score=176.72  Aligned_cols=244  Identities=16%  Similarity=0.169  Sum_probs=194.6

Q ss_pred             eeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce----eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEE
Q psy12911         71 SMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS----MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW  146 (356)
Q Consensus        71 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw  146 (356)
                      ....|...|..+...--|+.|++++.|++|+|+..+....    ..+.+|.++|..++|....-|.+|++++.||.|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            3456899999988888899999999999999999986542    238899999999999854589999999999999999


Q ss_pred             eCCCCCceEE--EeCCC---eeEEEecCC--CeEEEEecCCeEEEEeCCCC-ccccccccCcccccceEEEeecCCCC--
Q psy12911        147 DLRTPQPIMT--INLPE---RCYCADVDY--PLAVVGTAGRGIVLYQLEGK-PQEFKKTESPLKYQNRCIAIFRDKKK--  216 (356)
Q Consensus       147 d~~~~~~~~~--~~~~~---~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~--  216 (356)
                      .-.+++-.+.  ...|.   +.++..+..  -.|++++.||.|.+.+.+.. .-....+...|...+++++|.|....  
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~  165 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS  165 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence            9887753322  22232   344444443  47889999999999999876 44555566678889999999987321  


Q ss_pred             --------CCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC----CEEEEEcCCCe
Q psy12911        217 --------QPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH----GTLATVGSEGT  284 (356)
Q Consensus       217 --------~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~----~~l~s~~~dg~  284 (356)
                              ....|++|+.|..|+||..+....+...++.+|..           .|+.++|.|.-    .+||+++.||+
T Consensus       166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d-----------wVRDVAwaP~~gl~~s~iAS~SqDg~  234 (299)
T KOG1332|consen  166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD-----------WVRDVAWAPSVGLPKSTIASCSQDGT  234 (299)
T ss_pred             ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch-----------hhhhhhhccccCCCceeeEEecCCCc
Confidence                    12569999999999999999887777788999998           99999999964    68999999999


Q ss_pred             EEEEEcCcc-e--ecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        285 FSFWDKDAR-T--KLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       285 i~iwd~~~~-~--~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      |.||..... +  ....++.....+..+.||..|..|+.+++|.
T Consensus       235 viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN  278 (299)
T KOG1332|consen  235 VIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN  278 (299)
T ss_pred             EEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc
Confidence            999987622 1  1223444567899999999999999998764

>KOG1273|consensus

Probab=99.96  E-value=6.2e-27  Score=178.43  Aligned_cols=270  Identities=14%  Similarity=0.201  Sum_probs=204.5

Q ss_pred             eeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCcee
Q psy12911         32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSM  111 (356)
Q Consensus        32 V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  111 (356)
                      -.|+.|++.|   .+||+|+.||.|.|||+.+  ..+.+.+.+|..+|++++||++|+.|++++.|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G---~~lAvGc~nG~vvI~D~~T--~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWG---DYLAVGCANGRVVIYDFDT--FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCc---ceeeeeccCCcEEEEEccc--cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence            7899999999   9999999999999999998  5566889999999999999999999999999999999999999999


Q ss_pred             eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe--------CCCeeEEEecCCCeEEEEecCCeEE
Q psy12911        112 QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN--------LPERCYCADVDYPLAVVGTAGRGIV  183 (356)
Q Consensus       112 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~d~~i~  183 (356)
                      ......++|+.+.|+|......+++- .+..-.+-++..++. ..+.        .......++..+.++++|...|.+.
T Consensus       101 ~rirf~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll  178 (405)
T KOG1273|consen  101 KRIRFDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL  178 (405)
T ss_pred             eEEEccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence            88889999999999974444444443 344444555543211 1111        1112234667788999999999999


Q ss_pred             EEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC-------CCCCcceeeeecCCCCCC
Q psy12911        184 LYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA-------NPKDNFTFKCHRSNGGAG  256 (356)
Q Consensus       184 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~-------~~~~~~~~~~~~~~~~~~  256 (356)
                      ++|..+.+....... .....|..+.++..    +..+++-+.|..|+.|++..-       .+.+.+.+..--.     
T Consensus       179 v~~a~t~e~vas~ri-ts~~~IK~I~~s~~----g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN-----  248 (405)
T KOG1273|consen  179 VYDAETLECVASFRI-TSVQAIKQIIVSRK----GRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN-----  248 (405)
T ss_pred             EEecchheeeeeeee-chheeeeEEEEecc----CcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh-----
Confidence            999988643211111 12367788889888    889999999999999998511       1111122211000     


Q ss_pred             CcccccceEEEEEeCCCCEEEEEcC-CCeEEEEEcCcceecCCCCCCc-cceEEEEECCCCCEEEEEe
Q psy12911        257 GVQDIYAVNGIVFHPVHGTLATVGS-EGTFSFWDKDARTKLKPSEAMD-MSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       257 ~~~~~~~i~~i~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~s  322 (356)
                          ..+-.+++||.+|.|+++++. -..++||....|.+++.+.+.. ....++.|+|-...+++-.
T Consensus       249 ----k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~  312 (405)
T KOG1273|consen  249 ----KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA  312 (405)
T ss_pred             ----hhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc
Confidence                014678999999999887764 4579999999999999998877 4678899999988888764

>KOG0300|consensus

Probab=99.96  E-value=2.7e-27  Score=180.78  Aligned_cols=258  Identities=17%  Similarity=0.299  Sum_probs=211.0

Q ss_pred             CCCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEec------cCC-----------------------
Q psy12911         14 STPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEV------EPN-----------------------   64 (356)
Q Consensus        14 ~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~------~~~-----------------------   64 (356)
                      .....-+.+....||.+.|+|++|++.+   .++++++.|++..||..      ..+                       
T Consensus       175 Ws~Esg~CL~~Y~GH~GSVNsikfh~s~---~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d  251 (481)
T KOG0300|consen  175 WSLESGACLATYTGHTGSVNSIKFHNSG---LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD  251 (481)
T ss_pred             EeeccccceeeecccccceeeEEecccc---ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence            3445567788899999999999999999   99999999999999972      110                       


Q ss_pred             ------C---ceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeE
Q psy12911         65 ------G---KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCL  134 (356)
Q Consensus        65 ------~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l  134 (356)
                            +   ..++..+.+|.+.|.++.|...|+.+++++.|.+..+||+++++.+. +.+|....+.++-+  |..+++
T Consensus       252 ~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstH--ptQrLV  329 (481)
T KOG0300|consen  252 SSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTH--PTQRLV  329 (481)
T ss_pred             cccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccC--CcceEE
Confidence                  0   12335678999999999999999999999999999999999999988 88999999999988  999999


Q ss_pred             EEEECCCeEEEEeCCCC-CceEEEeCCCe-eEEEecC-CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEee
Q psy12911        135 MTGSWDKTLKFWDLRTP-QPIMTINLPER-CYCADVD-YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIF  211 (356)
Q Consensus       135 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~-~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  211 (356)
                      ++++.|.+.++||.+.. ..+..|++|.. +....+. ++.+++|+.|.+|++||+++...++..+.  ...++..++++
T Consensus       330 vTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs  407 (481)
T KOG0300|consen  330 VTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVS  407 (481)
T ss_pred             EEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee--cCCccceeEee
Confidence            99999999999999854 45677777765 4444444 35889999999999999999876555543  45678888888


Q ss_pred             cCCCCCCCeEEEeecCCeEEEEEeCCCCCCCc--ceeeeecCCCCCCCcccccceEEEEEeCCC--CEEEEEcCCCeEEE
Q psy12911        212 RDKKKQPAGYGLGSVEGRVAIQYVNPANPKDN--FTFKCHRSNGGAGGVQDIYAVNGIVFHPVH--GTLATVGSEGTFSF  287 (356)
Q Consensus       212 ~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~--~~l~s~~~dg~i~i  287 (356)
                      ..    ...++.--.+..|++||++......+  ..-.+|+.           .|+|++|..+.  .-|++++.|..+.=
T Consensus       408 ~g----~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR-----------MV~c~AW~eehp~cnLftcGFDR~v~g  472 (481)
T KOG0300|consen  408 KG----HPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR-----------MVTCCAWLEEHPACNLFTCGFDRMVAG  472 (481)
T ss_pred             cC----CceEEeccCCceEEEEecCCCccccCCcccccccce-----------eeeeeeccccCcccccccccccceeee
Confidence            87    67899999999999999987643322  24456766           89999998765  45889999999999


Q ss_pred             EEcCcc
Q psy12911        288 WDKDAR  293 (356)
Q Consensus       288 wd~~~~  293 (356)
                      |++...
T Consensus       473 W~in~p  478 (481)
T KOG0300|consen  473 WKINTP  478 (481)
T ss_pred             eEeccc
Confidence            998754

>KOG0294|consensus

Probab=99.96  E-value=1.4e-26  Score=176.38  Aligned_cols=255  Identities=14%  Similarity=0.161  Sum_probs=204.4

Q ss_pred             EEEEEeCCCeEEEEeccCCC------c----eeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ec
Q psy12911         46 FLIAGSWDNNVRCWEVEPNG------K----TIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VA  114 (356)
Q Consensus        46 ~l~~~~~dg~i~vw~~~~~~------~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~  114 (356)
                      .|++|++...|.=+++....      .    .....+..|.++|++++.+  +.++|+|+.|-+|+|||+.....+. +.
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence            57888888888888775422      1    1234567899999999985  7899999999999999999877665 78


Q ss_pred             ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEEEecCCeEEEEeCCCCc
Q psy12911        115 QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVVGTAGRGIVLYQLEGKP  191 (356)
Q Consensus       115 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  191 (356)
                      .|.+.|+++.|.+......|++|++||.|.+|+....+++.+++.|..   -+++.+.+.+.++.+.|+.++.|++-.+.
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            899999999999433344899999999999999999999999997763   56677888899999999999999998876


Q ss_pred             cccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeC
Q psy12911        192 QEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP  271 (356)
Q Consensus       192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp  271 (356)
                      .....   ......+.+.|+|.    +.+++.+..++ |-+|.++..  .....+....            .+.++.|- 
T Consensus       161 ~a~v~---~L~~~at~v~w~~~----Gd~F~v~~~~~-i~i~q~d~A--~v~~~i~~~~------------r~l~~~~l-  217 (362)
T KOG0294|consen  161 VAFVL---NLKNKATLVSWSPQ----GDHFVVSGRNK-IDIYQLDNA--SVFREIENPK------------RILCATFL-  217 (362)
T ss_pred             cceee---ccCCcceeeEEcCC----CCEEEEEeccE-EEEEecccH--hHhhhhhccc------------cceeeeec-
Confidence            44333   23444566999998    78888777664 788888765  2222222221            46667665 


Q ss_pred             CCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEE--CCCCCEEEEEeccC
Q psy12911        272 VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCAL--NHNGQIFAYAVSYD  325 (356)
Q Consensus       272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~s~~d  325 (356)
                      ++..|++|++|+.|++||..+..++..+.+|..+|.++.+  .|++.+|+++|+|+
T Consensus       218 ~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  218 DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG  273 (362)
T ss_pred             CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence            5689999999999999999999999999999999999984  47889999999998

>KOG1446|consensus

Probab=99.96  E-value=7.5e-26  Score=172.69  Aligned_cols=239  Identities=10%  Similarity=0.085  Sum_probs=193.4

Q ss_pred             eeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEEC--CCeEEE
Q psy12911         69 PKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSW--DKTLKF  145 (356)
Q Consensus        69 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~i  145 (356)
                      .+.+......|+++.|+++|.++++++.|.++++||..+++.++ +..+...+..++|.  .....++.++.  |.+||.
T Consensus         7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Ft--h~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFT--HHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEe--cCCceEEEccCCCCCceEE
Confidence            35566678899999999999999999999999999999999887 55566788888998  55566666665  889999


Q ss_pred             EeCCCCCceEEEeCCCe---eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEE
Q psy12911        146 WDLRTPQPIMTINLPER---CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYG  222 (356)
Q Consensus       146 wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  222 (356)
                      .++.+.+.++.+.+|..   .+++++.++.+++++.|++|++||++.........    -..-...++.|.    |-.+|
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~----~~~~pi~AfDp~----GLifA  156 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN----LSGRPIAAFDPE----GLIFA  156 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe----cCCCcceeECCC----CcEEE
Confidence            99999999999999984   45677778999999999999999999654322211    223457889998    88899


Q ss_pred             EeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC
Q psy12911        223 LGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM  302 (356)
Q Consensus       223 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  302 (356)
                      ++.....|++||++.....+..++.......        ...+.+.|||||++|+.+...+.+++.|.-+|..+.++..+
T Consensus       157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~--------~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~  228 (311)
T KOG1446|consen  157 LANGSELIKLYDLRSFDKGPFTTFSITDNDE--------AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY  228 (311)
T ss_pred             EecCCCeEEEEEecccCCCCceeEccCCCCc--------cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec
Confidence            9988889999999876555555554431100        16899999999999999999999999999999988888766


Q ss_pred             ccce---EEEEECCCCCEEEEEeccC
Q psy12911        303 DMSI---STCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       303 ~~~v---~~~~~s~~~~~l~~~s~~d  325 (356)
                      ...-   .+.+|+||++++++|++|+
T Consensus       229 ~~~~~~~~~a~ftPds~Fvl~gs~dg  254 (311)
T KOG1446|consen  229 PNAGNLPLSATFTPDSKFVLSGSDDG  254 (311)
T ss_pred             cCCCCcceeEEECCCCcEEEEecCCC
Confidence            4432   5788999999999998766

>KOG4283|consensus

Probab=99.96  E-value=4e-26  Score=172.54  Aligned_cols=291  Identities=13%  Similarity=0.143  Sum_probs=221.4

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc-----------ee--eeeeccCCcceeEEEEcc
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK-----------TI--PKSMQGMSEPVLDVAWID   86 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-----------~~--~~~~~~~~~~v~~~~~s~   86 (356)
                      +...+...|.+.|+++...+..  ++++++|+.||.|.|||++....           +.  ...-.+|.-.|..+.|-|
T Consensus        34 ~d~d~~r~HgGsvNsL~id~te--grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP  111 (397)
T KOG4283|consen   34 NDKDFVRPHGGSVNSLQIDLTE--GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP  111 (397)
T ss_pred             CCcceeccCCCccceeeecccc--ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee
Confidence            3344566799999999999876  59999999999999999986331           10  012246888999999999


Q ss_pred             -CCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCC-CCeEEEEECCCeEEEEeCCCCCceEEEeCCC-ee
Q psy12911         87 -DGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPN-YTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RC  163 (356)
Q Consensus        87 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~  163 (356)
                       |...+.+++.|.+++|||.++-+....+...+.|++-+++|-.. .-++++|..|-.|++-|+.+|..-.++.+|. .+
T Consensus       112 ~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v  191 (397)
T KOG4283|consen  112 IDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV  191 (397)
T ss_pred             ecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence             66688889999999999999998888888889999999985433 4567788888899999999999999999887 56


Q ss_pred             EEEecCCC---eEEEEecCCeEEEEeCCCCc-------------cccccccCcccccceEEEeecCCCCCCCeEEEeecC
Q psy12911        164 YCADVDYP---LAVVGTAGRGIVLYQLEGKP-------------QEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE  227 (356)
Q Consensus       164 ~~~~~~~~---~~~~~~~d~~i~i~d~~~~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d  227 (356)
                      +++.+...   .|++|+.||.|++||++.-.             .+.......|.+.+..++|..+    +.++++.+.|
T Consensus       192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd----~~~l~~~gtd  267 (397)
T KOG4283|consen  192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD----ARYLASCGTD  267 (397)
T ss_pred             EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc----chhhhhccCc
Confidence            77776654   68899999999999998641             1111223456788999999999    8899999999


Q ss_pred             CeEEEEEeCCCCCCCcce-eeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccce
Q psy12911        228 GRVAIQYVNPANPKDNFT-FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSI  306 (356)
Q Consensus       228 g~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  306 (356)
                      ..+++|+...+....... -..|......       .+. +. +.+...++---.++.+.++++-++..+..+..|-..|
T Consensus       268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~-------~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i  338 (397)
T KOG4283|consen  268 DRIRVWNMESGRNTLREFGPIIHNQTTSF-------AVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRI  338 (397)
T ss_pred             cceEEeecccCcccccccccccccccccc-------eEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccccee
Confidence            999999997664322111 1122210000       122 22 3344445544556899999999999999999998899


Q ss_pred             EEEEECCCCCEEEEEeccC
Q psy12911        307 STCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       307 ~~~~~s~~~~~l~~~s~~d  325 (356)
                      .+.++-|+-+...++.-|.
T Consensus       339 ~c~~~~~~fq~~~tg~~d~  357 (397)
T KOG4283|consen  339 NCAAYRPDFEQCFTGDMNG  357 (397)
T ss_pred             eEEeecCchhhhhccccCC
Confidence            9999999988888887543

>KOG0640|consensus

Probab=99.96  E-value=1.5e-27  Score=181.42  Aligned_cols=252  Identities=16%  Similarity=0.192  Sum_probs=193.1

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      -..++++-.|.++|+++.|+|..   .+|++|+.|++|++||......+..........+|.++.|+|.|.+|+.|..-.
T Consensus       162 hPvIRTlYDH~devn~l~FHPre---~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp  238 (430)
T KOG0640|consen  162 HPVIRTLYDHVDEVNDLDFHPRE---TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHP  238 (430)
T ss_pred             CceEeehhhccCcccceeecchh---heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCC
Confidence            46788999999999999999998   999999999999999997633222122223567999999999999999999999


Q ss_pred             eEEEEEcCCCceee----ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC-C--ee--EEEecC
Q psy12911         99 TVKCWDLASNQSMQ----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP-E--RC--YCADVD  169 (356)
Q Consensus        99 ~i~vwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~--~~--~~~~~~  169 (356)
                      ++++||+++-++..    -..|++.|+++.++  +.+++.++++.||.|++||--+++++.++... .  .+  ..+..+
T Consensus       239 ~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn  316 (430)
T KOG0640|consen  239 TLRLYDVNTYQCFVSANPDDQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN  316 (430)
T ss_pred             ceeEEeccceeEeeecCcccccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC
Confidence            99999999988764    35699999999999  99999999999999999999999999888632 2  22  234456


Q ss_pred             CCeEEEEecCCeEEEEeCCCCccccccccCccccc---ceEEEeecCCCCCCCeEEEe-ecCCeEEEEEeCCCCCCCcce
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQ---NRCIAIFRDKKKQPAGYGLG-SVEGRVAIQYVNPANPKDNFT  245 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~~~~~~~  245 (356)
                      +.++++.+.|..+++|.+.++............+.   -+...|+..    ..+++.- -..+.+.-||.++.....+..
T Consensus       317 ~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht----EdyVl~pDEas~slcsWdaRtadr~~l~s  392 (430)
T KOG0640|consen  317 GKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT----EDYVLFPDEASNSLCSWDARTADRVALLS  392 (430)
T ss_pred             CeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc----cceEEccccccCceeeccccchhhhhhcc
Confidence            77999999999999999998865444433211111   122233333    2333332 235667778887664333322


Q ss_pred             eeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        246 FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                       .+|.+           .+..+.-||.+.-+++++.|..+|+|--+
T Consensus       393 -lgHn~-----------a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  393 -LGHNG-----------AVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             -cCCCC-----------CceEEEeCCCCCceeeecccceeeeeeec
Confidence             35665           89999999999999999999999999744

>KOG0267|consensus

Probab=99.96  E-value=7.8e-29  Score=207.87  Aligned_cols=241  Identities=21%  Similarity=0.328  Sum_probs=214.0

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      .-..+.+..|...|.|+..-..+   +.+++|+.|..+-+|.+..  ......+.+|..+|.++.|+++..+|++|+.+|
T Consensus        18 ~~~~~~~~~hsaav~~lk~~~s~---r~~~~Gg~~~k~~L~~i~k--p~~i~S~~~hespIeSl~f~~~E~Llaagsasg   92 (825)
T KOG0267|consen   18 VWDTREFVAHSAAVGCLKIRKSS---RSLVTGGEDEKVNLWAIGK--PNAITSLTGHESPIESLTFDTSERLLAAGSASG   92 (825)
T ss_pred             cccchhhhhhhhhhceeeeeccc---eeeccCCCceeeccccccC--CchhheeeccCCcceeeecCcchhhhcccccCC
Confidence            34445667899999999996666   8999999999999999876  333356899999999999999999999999999


Q ss_pred             eEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEe
Q psy12911         99 TVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGT  177 (356)
Q Consensus        99 ~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (356)
                      +|++||++.++.++ +.+|...+.++.|+  |-+.++++|+.|..+++||++..-+.+.+..                  
T Consensus        93 tiK~wDleeAk~vrtLtgh~~~~~sv~f~--P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s------------------  152 (825)
T KOG0267|consen   93 TIKVWDLEEAKIVRTLTGHLLNITSVDFH--PYGEFFASGSTDTDLKIWDIRKKGCSHTYKS------------------  152 (825)
T ss_pred             ceeeeehhhhhhhhhhhccccCcceeeec--cceEEeccccccccceehhhhccCceeeecC------------------
Confidence            99999999998887 88999999999999  9999999999999999999987777777654                  


Q ss_pred             cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCC
Q psy12911        178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG  257 (356)
Q Consensus       178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  257 (356)
                                             |...+.++.|+|+    +.+++.++.|..++|||...+  +.+.+|+.|..      
T Consensus       153 -----------------------~~~vv~~l~lsP~----Gr~v~~g~ed~tvki~d~~ag--k~~~ef~~~e~------  197 (825)
T KOG0267|consen  153 -----------------------HTRVVDVLRLSPD----GRWVASGGEDNTVKIWDLTAG--KLSKEFKSHEG------  197 (825)
T ss_pred             -----------------------CcceeEEEeecCC----CceeeccCCcceeeeeccccc--ccccccccccc------
Confidence                                   3445688999999    889999999999999999777  77888999988      


Q ss_pred             cccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       258 ~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                           .+..+.|+|..-++++|+.|++|++||+++-+.+...+.....|.+++|+|+++.+++|-..
T Consensus       198 -----~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  198 -----KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             -----cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence                 89999999999999999999999999999999998888888899999999999999888643

>KOG0772|consensus

Probab=99.96  E-value=4.5e-27  Score=190.25  Aligned_cols=239  Identities=13%  Similarity=0.172  Sum_probs=181.1

Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCcee----e--ecccCCCeeEEEEEeCCCCCeEEEEECCCeE
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSM----Q--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTL  143 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~----~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i  143 (356)
                      ..+++|+..|.++++.|.|..|++|+.|.+|++||+......    +  .......|++++|+  +.+..|++.+.....
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys--~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS--VTGDQILVVSGSAQA  238 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeec--CCCCeEEEEecCcce
Confidence            467789999999999999999999999999999999764321    1  23456789999999  888899988888999


Q ss_pred             EEEeCCCCCceEEEeCCC---------------eeEEEecCC-CeEEEEecCCeEEEEeCCCCccccccc----cCcccc
Q psy12911        144 KFWDLRTPQPIMTINLPE---------------RCYCADVDY-PLAVVGTAGRGIVLYQLEGKPQEFKKT----ESPLKY  203 (356)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~  203 (356)
                      +++|-...+.+...++..               .+-++.+.. ..+++++.||++++||+.........+    ......
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            999954333333333221               123334433 488999999999999998765332222    233456


Q ss_pred             cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee-eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC
Q psy12911        204 QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF-KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE  282 (356)
Q Consensus       204 ~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d  282 (356)
                      .++..+|+++    +..+++|+.||.|.+|+.......+...+ .+|....         .|++|.||+||++|++-+.|
T Consensus       319 ~~tsC~~nrd----g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~---------~Itsi~FS~dg~~LlSRg~D  385 (641)
T KOG0772|consen  319 PVTSCAWNRD----GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQ---------DITSISFSYDGNYLLSRGFD  385 (641)
T ss_pred             CceeeecCCC----cchhhhcccCCceeeeecCCcccccceEeeeccCCCC---------ceeEEEeccccchhhhccCC
Confidence            7899999999    78899999999999999866544444333 4454321         69999999999999999999


Q ss_pred             CeEEEEEcCcc-eecCCCCCCc--cceEEEEECCCCCEEEEEec
Q psy12911        283 GTFSFWDKDAR-TKLKPSEAMD--MSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       283 g~i~iwd~~~~-~~~~~~~~~~--~~v~~~~~s~~~~~l~~~s~  323 (356)
                      +++++||++.. +++....+-.  -+-+.++|||+.++|++|.+
T Consensus       386 ~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  386 DTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             CceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence            99999999864 4555544432  25578999999999999986

>KOG1274|consensus

Probab=99.96  E-value=2.6e-25  Score=191.66  Aligned_cols=273  Identities=13%  Similarity=0.184  Sum_probs=214.9

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  103 (356)
                      ...+|...-+.++|.|+|   .+|++++.||.|++|+.......+ ..+..+...|.+++-.  +.+|++|+.+++|.+|
T Consensus         8 lRyaht~G~t~i~~d~~g---efi~tcgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y   81 (933)
T KOG1274|consen    8 LRYAHTGGLTLICYDPDG---EFICTCGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIACY--SNHFLTGSEQNTVLRY   81 (933)
T ss_pred             chhhccCceEEEEEcCCC---CEEEEecCCCceEEeecCCcccCC-chhhccCceeEEEeec--ccceEEeeccceEEEe
Confidence            345799999999999999   899999999999999987642222 3343377788887764  5599999999999999


Q ss_pred             EcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-e--eEEEecCCCeEEEEecC
Q psy12911        104 DLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-R--CYCADVDYPLAVVGTAG  179 (356)
Q Consensus       104 d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~d  179 (356)
                      .+.+++.-. +...+-++++++|+  .+|.+++.|+.|-.|++.++......+.+.++. .  .+.+++.+.+|++.+.|
T Consensus        82 ~fps~~~~~iL~Rftlp~r~~~v~--g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d  159 (933)
T KOG1274|consen   82 KFPSGEEDTILARFTLPIRDLAVS--GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD  159 (933)
T ss_pred             eCCCCCccceeeeeeccceEEEEe--cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecC
Confidence            999888764 56678899999999  999999999999999999999888777777665 3  44455666799999999


Q ss_pred             CeEEEEeCCCCcccccccc------CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911        180 RGIVLYQLEGKPQEFKKTE------SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG  253 (356)
Q Consensus       180 ~~i~i~d~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  253 (356)
                      |.+++||+.++........      ......+..++|+|+    +..+++...|+.|++|+....  ...+.+.......
T Consensus       160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk----~g~la~~~~d~~Vkvy~r~~w--e~~f~Lr~~~~ss  233 (933)
T KOG1274|consen  160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK----GGTLAVPPVDNTVKVYSRKGW--ELQFKLRDKLSSS  233 (933)
T ss_pred             ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCC----CCeEEeeccCCeEEEEccCCc--eeheeeccccccc
Confidence            9999999998753222111      111345678899999    778999999999999988766  4444444322110


Q ss_pred             CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                               .+..+.|+|.|+|||+++.||.|.|||.++-+.    ......|.+++|.|++..+-.-..
T Consensus       234 ---------~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~  290 (933)
T KOG1274|consen  234 ---------KFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITA  290 (933)
T ss_pred             ---------ceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEee
Confidence                     589999999999999999999999999997222    223568999999999987765443

>KOG0647|consensus

Probab=99.95  E-value=1.5e-26  Score=175.25  Aligned_cols=230  Identities=15%  Similarity=0.156  Sum_probs=173.7

Q ss_pred             cCCcceeEEEEcc-CCCeEEEEcCCCeEEEEEcCC-Cceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC
Q psy12911         74 GMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDLAS-NQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR  149 (356)
Q Consensus        74 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~-~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  149 (356)
                      .-...|.+|+||| ...+++++|.||+|++|+++. +....  ...|.++|.+++|+  .||..+++|+.|+.+++||+.
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Ws--ddgskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWS--DDGSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEc--cCCceEEeeccCCceEEEEcc
Confidence            3567899999999 555667899999999999987 34432  67899999999999  999999999999999999999


Q ss_pred             CCCceEEEeCCCeeEEEecCC----CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee
Q psy12911        150 TPQPIMTINLPERCYCADVDY----PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS  225 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  225 (356)
                      +++..+.-.+...+-++.+-.    ..|++|+.|.+|+.||.+........   .....+.++..-.      .+++++.
T Consensus       103 S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~---~LPeRvYa~Dv~~------pm~vVat  173 (347)
T KOG0647|consen  103 SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL---QLPERVYAADVLY------PMAVVAT  173 (347)
T ss_pred             CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee---eccceeeehhccC------ceeEEEe
Confidence            996554444444444444433    47899999999999999976433222   2344455555443      4789999


Q ss_pred             cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc--eecCCCCCCc
Q psy12911        226 VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR--TKLKPSEAMD  303 (356)
Q Consensus       226 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~  303 (356)
                      .+..|.+|++.....    .++.+...       ..+.+++++..+|....|.|+-+|.+.|..+..+  +.-..|+.|.
T Consensus       174 a~r~i~vynL~n~~t----e~k~~~Sp-------Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR  242 (347)
T KOG0647|consen  174 AERHIAVYNLENPPT----EFKRIESP-------LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHR  242 (347)
T ss_pred             cCCcEEEEEcCCCcc----hhhhhcCc-------ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEec
Confidence            999999999965432    12222111       1126899999999988899999999999999876  3334555664


Q ss_pred             ---------cceEEEEECCCCCEEEEEeccC
Q psy12911        304 ---------MSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       304 ---------~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                               ..|++++|+|.-..|+++++|+
T Consensus       243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDG  273 (347)
T KOG0647|consen  243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSDG  273 (347)
T ss_pred             cCCCCCCceEEecceEeecccceEEEecCCc
Confidence                     2588999999999999999887

>KOG0269|consensus

Probab=99.95  E-value=1.2e-26  Score=196.29  Aligned_cols=274  Identities=15%  Similarity=0.189  Sum_probs=210.7

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec--c---CCcceeEEEEcc-CCCeEEEEcCCCeEEEE
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ--G---MSEPVLDVAWID-DGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--~---~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw  103 (356)
                      ....++..+++-   ..++.++. ..++||.++.........+.  .   -...+..+.|.. +.++||+++..|.|.+|
T Consensus        40 ~~~nAIs~nr~~---~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW  115 (839)
T KOG0269|consen   40 AKANAISVNRDI---NQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW  115 (839)
T ss_pred             cccceEeecCCc---ceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence            455667777887   77888875 48999988775432222221  1   122456678875 56799999999999999


Q ss_pred             EcCC---Ccee-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCC-CeEEE
Q psy12911        104 DLAS---NQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDY-PLAVV  175 (356)
Q Consensus       104 d~~~---~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~  175 (356)
                      |+..   .+.+ .+..|+..+.++.|++ ....+|++|+.||+|++||++..+...++.....   -+.+++.. ..+++
T Consensus       116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~-tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s  194 (839)
T KOG0269|consen  116 DLNKSIRNKLLTVFNEHERSANKLDFHS-TEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFAS  194 (839)
T ss_pred             ecCccccchhhhHhhhhccceeeeeecc-CCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEE
Confidence            9987   3333 3788999999999995 5678999999999999999999988888776542   34455444 57888


Q ss_pred             EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      +...|.+.+||++.......... .|.+++.|+.|+|+    ..+||+|+.|+.|+||++.....+.+.++..-.     
T Consensus       195 ~~dsG~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhPn----r~~lATGGRDK~vkiWd~t~~~~~~~~tInTia-----  264 (839)
T KOG0269|consen  195 IHDSGYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHPN----REWLATGGRDKMVKIWDMTDSRAKPKHTINTIA-----  264 (839)
T ss_pred             ecCCceEEEeeccCchhHHHHhh-cccCceEEEeecCC----CceeeecCCCccEEEEeccCCCccceeEEeecc-----
Confidence            89999999999998765444443 78999999999998    889999999999999999877666666655433     


Q ss_pred             CCcccccceEEEEEeCCCC-EEEEEc--CCCeEEEEEcCcc-eecCCCCCCccceEEEEECC-CCCEEEEEeccC
Q psy12911        256 GGVQDIYAVNGIVFHPVHG-TLATVG--SEGTFSFWDKDAR-TKLKPSEAMDMSISTCALNH-NGQIFAYAVSYD  325 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~-~l~s~~--~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~s~~d  325 (356)
                             +|.++.|-|+.. .||+++  .|-.|+|||+.-. -+..++..|...++.++|-. |-..|.+++.|.
T Consensus       265 -------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~  332 (839)
T KOG0269|consen  265 -------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDG  332 (839)
T ss_pred             -------eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCcc
Confidence                   799999999874 566654  4778999999744 34567889999999999976 455666776665

>KOG0264|consensus

Probab=99.95  E-value=2.3e-26  Score=183.28  Aligned_cols=216  Identities=21%  Similarity=0.306  Sum_probs=173.1

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc-----eeeeeeccCCcceeEEEEcc-CCCeE
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK-----TIPKSMQGMSEPVLDVAWID-DGTKV   91 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~s~-~~~~l   91 (356)
                      ..++-..+.+|++.=+.++|++..  .-.|++|+.|++|.+||+...+.     .....+.+|...|..++|++ +...+
T Consensus       166 ~~~Pdl~L~gH~~eg~glsWn~~~--~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF  243 (422)
T KOG0264|consen  166 ECRPDLRLKGHEKEGYGLSWNRQQ--EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLF  243 (422)
T ss_pred             cCCCceEEEeeccccccccccccc--ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhh
Confidence            445566788999988899999976  46899999999999999976443     23456789999999999999 55688


Q ss_pred             EEEcCCCeEEEEEcCC--Cceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC-ceEEEeCCCeeEEEe
Q psy12911         92 FMAGCDKTVKCWDLAS--NQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ-PIMTINLPERCYCAD  167 (356)
Q Consensus        92 ~~~~~dg~i~vwd~~~--~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~  167 (356)
                      ++++.|+.+.|||+++  .+... ..+|.+.|.|++|+| -++.+||+|+.|++|.+||+|+.. ++.++.         
T Consensus       244 ~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp-~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e---------  313 (422)
T KOG0264|consen  244 GSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNP-FNEFILATGSADKTVALWDLRNLNKPLHTFE---------  313 (422)
T ss_pred             eeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCC-CCCceEEeccCCCcEEEeechhcccCceecc---------
Confidence            8999999999999995  33333 678999999999996 567889999999999999998753 444444         


Q ss_pred             cCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC--------
Q psy12911        168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN--------  239 (356)
Q Consensus       168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~--------  239 (356)
                                                      .|...|.++.|+|..   ...+++++.|+.+.+||+..-.        
T Consensus       314 --------------------------------~H~dev~~V~WSPh~---etvLASSg~D~rl~vWDls~ig~eq~~eda  358 (422)
T KOG0264|consen  314 --------------------------------GHEDEVFQVEWSPHN---ETVLASSGTDRRLNVWDLSRIGEEQSPEDA  358 (422)
T ss_pred             --------------------------------CCCcceEEEEeCCCC---CceeEecccCCcEEEEeccccccccChhhh
Confidence                                            356677888888875   5678888888888888885322        


Q ss_pred             ----CCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcC
Q psy12911        240 ----PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKD  291 (356)
Q Consensus       240 ----~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~  291 (356)
                          +..++.-.||..           .|..+.|+|... .|++.++|+.+.||.+.
T Consensus       359 ~dgppEllF~HgGH~~-----------kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  359 EDGPPELLFIHGGHTA-----------KVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccCCcceeEEecCccc-----------ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                233455566666           899999999885 57788999999999986

>KOG1063|consensus

Probab=99.95  E-value=2.2e-25  Score=186.43  Aligned_cols=293  Identities=17%  Similarity=0.204  Sum_probs=212.1

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc-----------------------eee----
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK-----------------------TIP----   69 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-----------------------~~~----   69 (356)
                      ..++....+.||.+.|.+++|...+.+.-+||++|.|..||||.+...+.                       .+.    
T Consensus       179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is  258 (764)
T KOG1063|consen  179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS  258 (764)
T ss_pred             cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence            36788889999999999999998774456999999999999998765330                       000    


Q ss_pred             --eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce-----ee---ecccCCCeeEEEEEeCCCCCeEEEEEC
Q psy12911         70 --KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS-----MQ---VAQHDAPVKTCHWIKAPNYTCLMTGSW  139 (356)
Q Consensus        70 --~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~  139 (356)
                        ..+.||.+.|.++.|+|.+..|++++.|.++.+|...+..-     ++   ..+.........|+  ++++.+++-+.
T Consensus       259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~--~n~~~ii~~g~  336 (764)
T KOG1063|consen  259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS--PNSNVIIAHGR  336 (764)
T ss_pred             hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc--CCCCEEEEecc
Confidence              12349999999999999999999999999999998776521     12   12334568889999  99999999999


Q ss_pred             CCeEEEEeCCCCC---ceEEEeCCC---eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccc----------------
Q psy12911        140 DKTLKFWDLRTPQ---PIMTINLPE---RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT----------------  197 (356)
Q Consensus       140 dg~i~iwd~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----------------  197 (356)
                      .|..++|......   ....+.+|.   .-+..++.+.++++.+.|.+-++|-.-+++.....+                
T Consensus       337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v  416 (764)
T KOG1063|consen  337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV  416 (764)
T ss_pred             cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence            9999999832211   112222222   223334445555555555555554332110000000                


Q ss_pred             --------------------------------------------------------------------------------
Q psy12911        198 --------------------------------------------------------------------------------  197 (356)
Q Consensus       198 --------------------------------------------------------------------------------  197 (356)
                                                                                                      
T Consensus       417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~  496 (764)
T KOG1063|consen  417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA  496 (764)
T ss_pred             cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence                                                                                            


Q ss_pred             ------------------------cCcccccceEEEeecCCCCCCCeEEEeecCC-----eEEEEEeCCCCCCCcceeee
Q psy12911        198 ------------------------ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG-----RVAIQYVNPANPKDNFTFKC  248 (356)
Q Consensus       198 ------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg-----~i~i~~~~~~~~~~~~~~~~  248 (356)
                                              .-.|...+.+++.+|+    ++++++++...     .|++|+...-  .....+.+
T Consensus       497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~----gnliASaCKS~~~ehAvI~lw~t~~W--~~~~~L~~  570 (764)
T KOG1063|consen  497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT----GNLIASACKSSLKEHAVIRLWNTANW--LQVQELEG  570 (764)
T ss_pred             chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC----CCEEeehhhhCCccceEEEEEeccch--hhhheecc
Confidence                                    0015677899999999    78999888654     4677776544  66778899


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce----ecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART----KLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                      |.-           .|+.++|||||++|++.+.|.++.+|......    .....+.|+.-|+++.|+|++.++|++|-|
T Consensus       571 HsL-----------TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD  639 (764)
T KOG1063|consen  571 HSL-----------TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD  639 (764)
T ss_pred             cce-----------EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC
Confidence            987           89999999999999999999999999975432    233477899999999999999999999976


Q ss_pred             CCcC
Q psy12911        325 DWSK  328 (356)
Q Consensus       325 d~~~  328 (356)
                      ...+
T Consensus       640 K~Vk  643 (764)
T KOG1063|consen  640 KKVK  643 (764)
T ss_pred             ceEE
Confidence            6333

>KOG0321|consensus

Probab=99.95  E-value=8.8e-26  Score=187.17  Aligned_cols=250  Identities=16%  Similarity=0.187  Sum_probs=186.0

Q ss_pred             eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC-CCeEEEEcCCCeE
Q psy12911         22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD-GTKVFMAGCDKTV  100 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i  100 (356)
                      +.....|.+.|..+.|-|..   ..|++++.|.++++||++..+..-...+.+|...|.+++|.|. ...|++|+.||.|
T Consensus        93 lk~~~aH~nAifDl~wapge---~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~i  169 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGE---SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEI  169 (720)
T ss_pred             hcccccccceeEeeccCCCc---eeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcE
Confidence            45567899999999999955   8999999999999999998544433458899999999999994 4578899999999


Q ss_pred             EEEEcCCCce--------------------e--------eecccCCC----eeEEEEEeCCCCCeEEEEEC-CCeEEEEe
Q psy12911        101 KCWDLASNQS--------------------M--------QVAQHDAP----VKTCHWIKAPNYTCLMTGSW-DKTLKFWD  147 (356)
Q Consensus       101 ~vwd~~~~~~--------------------~--------~~~~~~~~----v~~~~~~~~~~~~~l~~~~~-dg~i~iwd  147 (356)
                      .|||++....                    .        ....+...    |+.+.|   .|...|++++. |+.|++||
T Consensus       170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWD  246 (720)
T KOG0321|consen  170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWD  246 (720)
T ss_pred             EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEe
Confidence            9999864320                    0        01123333    444555   78889999988 99999999


Q ss_pred             CCCCCceEEEe--------CC------CeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcc--cccceEEEee
Q psy12911        148 LRTPQPIMTIN--------LP------ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPL--KYQNRCIAIF  211 (356)
Q Consensus       148 ~~~~~~~~~~~--------~~------~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~i~~~~~~  211 (356)
                      ++.........        .+      ...++++..|.++++.+.|+.|++|++.............+  ......-..+
T Consensus       247 LRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lS  326 (720)
T KOG0321|consen  247 LRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELS  326 (720)
T ss_pred             ecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecC
Confidence            99865433221        11      12556677778999999999999999987643322222111  1222334456


Q ss_pred             cCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEc
Q psy12911        212 RDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDK  290 (356)
Q Consensus       212 ~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~  290 (356)
                      |+    +.++++|+.|...++|.++... .....+.+|..           .|++++|.|.. .-++++++|.+++||++
T Consensus       327 pd----~~~l~SgSsd~~ayiw~vs~~e-~~~~~l~Ght~-----------eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  327 PD----DCSLLSGSSDEQAYIWVVSSPE-APPALLLGHTR-----------EVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             CC----CceEeccCCCcceeeeeecCcc-CChhhhhCcce-----------EEEEEeeccccCCCceeeccCcceEEEec
Confidence            77    8899999999999999998664 45667778887           89999998854 45677799999999998


Q ss_pred             Ccc
Q psy12911        291 DAR  293 (356)
Q Consensus       291 ~~~  293 (356)
                      ..+
T Consensus       391 ~~~  393 (720)
T KOG0321|consen  391 SNG  393 (720)
T ss_pred             cCc
Confidence            654

>KOG0270|consensus

Probab=99.95  E-value=9.8e-26  Score=179.23  Aligned_cols=249  Identities=17%  Similarity=0.268  Sum_probs=188.0

Q ss_pred             eEEEecCC----CCCceEEEEEeCCCeEEEEeccCCCc-eee------------------eeeccCCcceeEEEEccCC-
Q psy12911         33 SCMAFSPS----TLPQYFLIAGSWDNNVRCWEVEPNGK-TIP------------------KSMQGMSEPVLDVAWIDDG-   88 (356)
Q Consensus        33 ~~~~~~~~----~~~~~~l~~~~~dg~i~vw~~~~~~~-~~~------------------~~~~~~~~~v~~~~~s~~~-   88 (356)
                      .|++|...    +..++++|.|+.|..|.|||+.--.. .+.                  ....+|+..|.+++|+..- 
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            46666433    33458999999999999999864211 000                  1123699999999998743 


Q ss_pred             CeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC---CceEEEeCCCeeE
Q psy12911         89 TKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP---QPIMTINLPERCY  164 (356)
Q Consensus        89 ~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~  164 (356)
                      +.||+||.|.+|++||+.++++.. +..|...|.++.|+| .....|++|+.|++|.+.|.|..   .....+.+....+
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~-~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv  335 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHP-YEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV  335 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecC-CCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence            578999999999999999999988 455899999999996 67789999999999999999943   2334444455555


Q ss_pred             EEecCCC-eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCc
Q psy12911        165 CADVDYP-LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDN  243 (356)
Q Consensus       165 ~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~  243 (356)
                      .+.+... .+++++.||+++-+|+|....+.... ..|...|.++++++..   +..+++++.++.+++|++....++.+
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~-~AHd~~ISgl~~n~~~---p~~l~t~s~d~~Vklw~~~~~~~~~v  411 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL-KAHDDEISGLSVNIQT---PGLLSTASTDKVVKLWKFDVDSPKSV  411 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecCCCCCceeEE-EeccCCcceEEecCCC---CcceeeccccceEEEEeecCCCCccc
Confidence            6665554 77788899999999999986544443 3788999999999874   67899999999999999987765443


Q ss_pred             ceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcceecC
Q psy12911        244 FTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDARTKLK  297 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~  297 (356)
                      ..-.-.-+           ...|.++.|+- -+||.|+..+.++|||+.+...+.
T Consensus       412 ~~~~~~~~-----------rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  412 KEHSFKLG-----------RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             cccccccc-----------ceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            32221111           45677787875 567888888999999998775543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=3.5e-24  Score=177.80  Aligned_cols=277  Identities=12%  Similarity=0.048  Sum_probs=193.0

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeE-EEEcCCCeEEEEEcCCCceeeecccCCCeeEE
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV-FMAGCDKTVKCWDLASNQSMQVAQHDAPVKTC  123 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~  123 (356)
                      .++++++.|+.|++||+.++  .....+..+. .+.+++|+|+++.+ ++++.++.|++||..+++..........+..+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~--~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   78 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATL--EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELF   78 (300)
T ss_pred             cEEEEecCCCEEEEEECCCC--ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEE
Confidence            67899999999999999873  3345555443 46789999999876 56677899999999998876633223345678


Q ss_pred             EEEeCCCCCeEEEE-ECCCeEEEEeCCCCCceEEEeCCC--eeEEEecCCCeEEEEecCC-eEEEEeCCCCccccccccC
Q psy12911        124 HWIKAPNYTCLMTG-SWDKTLKFWDLRTPQPIMTINLPE--RCYCADVDYPLAVVGTAGR-GIVLYQLEGKPQEFKKTES  199 (356)
Q Consensus       124 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~-~i~i~d~~~~~~~~~~~~~  199 (356)
                      +|+  ++++.++++ +.++.|++||+++.+.+..+..+.  ..+.+++++..++++..++ .+..||.++.......   
T Consensus        79 ~~~--~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~---  153 (300)
T TIGR03866        79 ALH--PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV---  153 (300)
T ss_pred             EEC--CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---
Confidence            898  888877554 568999999999988887776433  4566777788888887764 5677898775432211   


Q ss_pred             cccccceEEEeecCCCCCCCeEEEe-ecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEE
Q psy12911        200 PLKYQNRCIAIFRDKKKQPAGYGLG-SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLAT  278 (356)
Q Consensus       200 ~~~~~i~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s  278 (356)
                      .....+..++|+|+    +..++++ ..++.+++||++..  +.+..+..+....    .........++|+|++++++.
T Consensus       154 ~~~~~~~~~~~s~d----g~~l~~~~~~~~~v~i~d~~~~--~~~~~~~~~~~~~----~~~~~~~~~i~~s~dg~~~~~  223 (300)
T TIGR03866       154 LVDQRPRFAEFTAD----GKELWVSSEIGGTVSVIDVATR--KVIKKITFEIPGV----HPEAVQPVGIKLTKDGKTAFV  223 (300)
T ss_pred             EcCCCccEEEECCC----CCEEEEEcCCCCEEEEEEcCcc--eeeeeeeeccccc----ccccCCccceEECCCCCEEEE
Confidence            12334577899999    6666544 56999999999765  3333333221100    000002456889999987554


Q ss_pred             -EcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCceee
Q psy12911        279 -VGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIF  342 (356)
Q Consensus       279 -~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~~  342 (356)
                       .+.++.|.+||+.+++.+..+. +...+.+++|+|+|++|+++++.  +....+|+......+.
T Consensus       224 ~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~--~~~i~v~d~~~~~~~~  285 (300)
T TIGR03866       224 ALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGV--SNDVSVIDVAALKVIK  285 (300)
T ss_pred             EcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCC--CCeEEEEECCCCcEEE
Confidence             4557789999999887765543 34578999999999999987543  2346667777655543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321|consensus

Probab=99.95  E-value=2e-25  Score=185.04  Aligned_cols=277  Identities=13%  Similarity=0.140  Sum_probs=203.2

Q ss_pred             EEEecCCCCCceEEEEEeCCCeEEEEeccCCC----ceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc
Q psy12911         34 CMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG----KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ  109 (356)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  109 (356)
                      +..|++.-.....|+.+..||.|.++|...-.    +...+....|...|..+.|.|....|++++.|.++++||+++.+
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence            36676654445899999999999999986522    12234566899999999999977789999999999999999988


Q ss_pred             eee---ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC--------------------ceEEE-------eC
Q psy12911        110 SMQ---VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ--------------------PIMTI-------NL  159 (356)
Q Consensus       110 ~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~-------~~  159 (356)
                      +..   +.+|.+.|.+++|.| .+...|++|+.||.|.|||++-..                    ..+.+       ..
T Consensus       134 l~G~~~~~GH~~SvkS~cf~~-~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  134 LVGGRLNLGHTGSVKSECFMP-TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             eecceeecccccccchhhhcc-CCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence            765   689999999999995 566789999999999999987432                    00000       00


Q ss_pred             CC-e----e-EEEecCCCeEEEEec-CCeEEEEeCCCCccccccccCc---------ccccceEEEeecCCCCCCCeEEE
Q psy12911        160 PE-R----C-YCADVDYPLAVVGTA-GRGIVLYQLEGKPQEFKKTESP---------LKYQNRCIAIFRDKKKQPAGYGL  223 (356)
Q Consensus       160 ~~-~----~-~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~  223 (356)
                      +. .    + ..+..+...|++++. |+.|++||++......+.....         ....+.++.....    |.++.+
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss----Gt~L~A  288 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS----GTYLFA  288 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC----CCeEEE
Confidence            11 0    1 223345567888777 9999999999875433322211         1233455555554    678888


Q ss_pred             eecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee-cCCCCCC
Q psy12911        224 GSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK-LKPSEAM  302 (356)
Q Consensus       224 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~  302 (356)
                      .+.|+.|++|++......++..+.++....         .-..-..+||+.+|++|+.|...++|.+.+.+. ...+.+|
T Consensus       289 sCtD~sIy~ynm~s~s~sP~~~~sg~~~~s---------f~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Gh  359 (720)
T KOG0321|consen  289 SCTDNSIYFYNMRSLSISPVAEFSGKLNSS---------FYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGH  359 (720)
T ss_pred             EecCCcEEEEeccccCcCchhhccCcccce---------eeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCc
Confidence            888999999999887767777777665421         122345789999999999999999999987654 5567799


Q ss_pred             ccceEEEEECCCC-CEEEEEeccC
Q psy12911        303 DMSISTCALNHNG-QIFAYAVSYD  325 (356)
Q Consensus       303 ~~~v~~~~~s~~~-~~l~~~s~~d  325 (356)
                      .-.|++++|.|.. .-++++ +||
T Consensus       360 t~eVt~V~w~pS~~t~v~Tc-SdD  382 (720)
T KOG0321|consen  360 TREVTTVRWLPSATTPVATC-SDD  382 (720)
T ss_pred             ceEEEEEeeccccCCCceee-ccC
Confidence            9999999998753 335555 565

>KOG0268|consensus

Probab=99.95  E-value=2.4e-26  Score=178.30  Aligned_cols=255  Identities=12%  Similarity=0.197  Sum_probs=203.9

Q ss_pred             CCCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE
Q psy12911         14 STPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM   93 (356)
Q Consensus        14 ~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~   93 (356)
                      ++......+..+++|.+.|..+++...     .+++++.|.+|+.|.++.   ...+++. ....+..+.-+..+..+++
T Consensus        94 WnlsqR~~~~~f~AH~G~V~Gi~v~~~-----~~~tvgdDKtvK~wk~~~---~p~~til-g~s~~~gIdh~~~~~~FaT  164 (433)
T KOG0268|consen   94 WNLSQRECIRTFKAHEGLVRGICVTQT-----SFFTVGDDKTVKQWKIDG---PPLHTIL-GKSVYLGIDHHRKNSVFAT  164 (433)
T ss_pred             EehhhhhhhheeecccCceeeEEeccc-----ceEEecCCcceeeeeccC---Ccceeee-ccccccccccccccccccc
Confidence            345556678889999999999999874     488888999999999876   2445554 3566778887777788888


Q ss_pred             EcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--eeEEEecCC
Q psy12911         94 AGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--RCYCADVDY  170 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~  170 (356)
                      ++.  .|.|||.....+++ +.-....|.++.|+| -.-..|++|+.|+.|.+||++++.+++.+....  +.+|+.+..
T Consensus       165 cGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNp-vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea  241 (433)
T KOG0268|consen  165 CGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNP-VETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA  241 (433)
T ss_pred             cCc--eeeecccccCCccceeecCCCceeEEecCC-CcchheeeeccCCceEEEecccCCccceeeeeccccceecCccc
Confidence            875  69999998877776 555677899999995 445678888899999999999999988776544  566777755


Q ss_pred             CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeec
Q psy12911        171 PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHR  250 (356)
Q Consensus       171 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  250 (356)
                      ..+.++..|..++.||++....+..... .|...+..+.|+|.    |..+++|+.|.+|+||..+......++-.+--.
T Consensus       242 fnF~~a~ED~nlY~~DmR~l~~p~~v~~-dhvsAV~dVdfspt----G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq  316 (433)
T KOG0268|consen  242 FNFVAANEDHNLYTYDMRNLSRPLNVHK-DHVSAVMDVDFSPT----GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ  316 (433)
T ss_pred             cceeeccccccceehhhhhhcccchhhc-ccceeEEEeccCCC----cchhccccccceEEEeecCCCcchhhhhHhhhh
Confidence            6788899999999999998765554443 67788999999999    899999999999999999876544443322222


Q ss_pred             CCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK  297 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~  297 (356)
                                  .|.++.||.|.+|+++|++|+.|++|.....+.+.
T Consensus       317 ------------~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  317 ------------HVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             ------------eeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence                        59999999999999999999999999976554443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=7.2e-24  Score=175.91  Aligned_cols=267  Identities=14%  Similarity=0.052  Sum_probs=189.0

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEE-EEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFL-IAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GC   96 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~   96 (356)
                      .+....+..|. .+.+++|+|++   ..+ ++++.++.|++||..++  .....+..+. .+..++|+|+++.++++ +.
T Consensus        21 ~~~~~~~~~~~-~~~~l~~~~dg---~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~   93 (300)
T TIGR03866        21 LEVTRTFPVGQ-RPRGITLSKDG---KLLYVCASDSDTIQVIDLATG--EVIGTLPSGP-DPELFALHPNGKILYIANED   93 (300)
T ss_pred             CceEEEEECCC-CCCceEECCCC---CEEEEEECCCCeEEEEECCCC--cEEEeccCCC-CccEEEECCCCCEEEEEcCC
Confidence            34555565554 46789999998   665 66778899999999873  2334444443 35678999999977655 45


Q ss_pred             CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCC-eEEEEeCCCCCceEEEeCCC--eeEEEecCCCeE
Q psy12911         97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK-TLKFWDLRTPQPIMTINLPE--RCYCADVDYPLA  173 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~  173 (356)
                      ++.|++||+.+++.+....+...+.+++|+  |++.+++++..++ .+.+||.++++.+..+....  ..+.+++++..+
T Consensus        94 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l  171 (300)
T TIGR03866        94 DNLVTVIDIETRKVLAEIPVGVEPEGMAVS--PDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKEL  171 (300)
T ss_pred             CCeEEEEECCCCeEEeEeeCCCCcceEEEC--CCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEE
Confidence            899999999988776644444567889999  9999999988765 46778998887766554333  345667777777


Q ss_pred             EEE-ecCCeEEEEeCCCCccccccccC-----cccccceEEEeecCCCCCCCeEE-EeecCCeEEEEEeCCCCCCCccee
Q psy12911        174 VVG-TAGRGIVLYQLEGKPQEFKKTES-----PLKYQNRCIAIFRDKKKQPAGYG-LGSVEGRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       174 ~~~-~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~-~~~~dg~i~i~~~~~~~~~~~~~~  246 (356)
                      +++ ..++.|.+||+++..........     ........++++|+    +..++ +...++.+.+||.+..  +....+
T Consensus       172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d----g~~~~~~~~~~~~i~v~d~~~~--~~~~~~  245 (300)
T TIGR03866       172 WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD----GKTAFVALGPANRVAVVDAKTY--EVLDYL  245 (300)
T ss_pred             EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC----CCEEEEEcCCCCeEEEEECCCC--cEEEEE
Confidence            555 46899999999886532211110     01123356888998    56544 4456778999998654  333333


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCCCEEEEE-cCCCeEEEEEcCcceecCCCCCCccceEEEEECC
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV-GSEGTFSFWDKDARTKLKPSEAMDMSISTCALNH  313 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  313 (356)
                      . +..           .+.+++|+|+|++|+++ +.+|.|++||+.+++++..++.. ...+.++++|
T Consensus       246 ~-~~~-----------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       246 L-VGQ-----------RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             E-eCC-----------CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            2 222           68899999999999876 56899999999999998888754 5558888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036|consensus

Probab=99.94  E-value=4.3e-25  Score=167.85  Aligned_cols=232  Identities=14%  Similarity=0.150  Sum_probs=180.0

Q ss_pred             CCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce
Q psy12911         75 MSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI  154 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  154 (356)
                      ....|.++.|+|.++.|+++++||++++||+...+......|..++.+++|.  + ...+++|+.||.|+.+|+.+++..
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~--d-~~~~~~G~~dg~vr~~Dln~~~~~   88 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFA--D-ESTIVTGGLDGQVRRYDLNTGNED   88 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeecc--C-CceEEEeccCceEEEEEecCCcce
Confidence            3678999999999999999999999999999998777788899999999996  4 568999999999999999998776


Q ss_pred             EEEeCCCeeEEEecC--CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911        155 MTINLPERCYCADVD--YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI  232 (356)
Q Consensus       155 ~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i  232 (356)
                      ..-.+...+.++...  .+.+++|+.|++|++||.+.......   ......|.++...      +..|++|+.+..+.+
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~---~d~~kkVy~~~v~------g~~LvVg~~~r~v~i  159 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT---FDQGKKVYCMDVS------GNRLVVGTSDRKVLI  159 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc---cccCceEEEEecc------CCEEEEeecCceEEE
Confidence            666655555555544  67999999999999999997322211   1223467777766      458999999999999


Q ss_pred             EEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc----eecCCCCCCc-----
Q psy12911        233 QYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR----TKLKPSEAMD-----  303 (356)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~-----  303 (356)
                      ||++.........-.           +-.+.+.++++-|++.=+++++-||+|.+=.++..    +....|+.|.     
T Consensus       160 yDLRn~~~~~q~reS-----------~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~  228 (323)
T KOG1036|consen  160 YDLRNLDEPFQRRES-----------SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD  228 (323)
T ss_pred             EEcccccchhhhccc-----------cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC
Confidence            999865321111001           11137999999998888899999999988776655    3334555662     


Q ss_pred             ----cceEEEEECCCCCEEEEEeccCCcCC
Q psy12911        304 ----MSISTCALNHNGQIFAYAVSYDWSKG  329 (356)
Q Consensus       304 ----~~v~~~~~s~~~~~l~~~s~~d~~~~  329 (356)
                          -+|++++|+|-...||+|++|+....
T Consensus       229 ~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~  258 (323)
T KOG1036|consen  229 TEIIYPVNAIAFHPIHGTFATGGSDGIVNI  258 (323)
T ss_pred             ceEEEEeceeEeccccceEEecCCCceEEE
Confidence                37999999999999999999885433

>KOG2106|consensus

Probab=99.94  E-value=2.4e-24  Score=174.12  Aligned_cols=266  Identities=14%  Similarity=0.252  Sum_probs=195.6

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceee-eeecc-CCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIP-KSMQG-MSEPVLDVAWIDDGTKVFMAGCDKTVKCWD  104 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  104 (356)
                      ..++.|..+.|+|.+  ++++++.+ .|-+..|+.+.+..... ..+.. .+.-|.|++|.++|+ +++|..+|.|.||+
T Consensus       198 ~sne~v~~a~FHPtd--~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~  273 (626)
T KOG2106|consen  198 TSNEVVFLATFHPTD--PNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWS  273 (626)
T ss_pred             eccceEEEEEeccCC--CcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEe
Confidence            345678899999998  45666655 67899999987542221 12222 236899999999984 88999999999999


Q ss_pred             cCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC-----------------------
Q psy12911        105 LASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP-----------------------  160 (356)
Q Consensus       105 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------  160 (356)
                      ..+.+..+ ...|.+.|.+++..  .+|. |++|+.|+.|..|| ..-+.++..+.+                       
T Consensus       274 ~~~~~~~k~~~aH~ggv~~L~~l--r~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN  349 (626)
T KOG2106|consen  274 KGTNRISKQVHAHDGGVFSLCML--RDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRN  349 (626)
T ss_pred             CCCceEEeEeeecCCceEEEEEe--cCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccc
Confidence            98777655 55999999999998  8876 55699999999999 222222211111                       


Q ss_pred             ------------------C-e--eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCC
Q psy12911        161 ------------------E-R--CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPA  219 (356)
Q Consensus       161 ------------------~-~--~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  219 (356)
                                        . .  .++..++.+.+++++.|+.+++|+  ..+....   .....+..|+.|+|.    + 
T Consensus       350 ~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt---~~~~d~~~~~~fhps----g-  419 (626)
T KOG2106|consen  350 FILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT---KIIEDPAECADFHPS----G-  419 (626)
T ss_pred             eEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE---EEecCceeEeeccCc----c-
Confidence                              0 0  233444556889999999999999  2222222   234577899999999    6 


Q ss_pred             eEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc-eecCC
Q psy12911        220 GYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR-TKLKP  298 (356)
Q Consensus       220 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~  298 (356)
                      .+++|+..|...+.|.+..   .+.++.....           ++++++|+|+|.+||.|+.|+.|+||.+... ..+..
T Consensus       420 ~va~Gt~~G~w~V~d~e~~---~lv~~~~d~~-----------~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r  485 (626)
T KOG2106|consen  420 VVAVGTATGRWFVLDTETQ---DLVTIHTDNE-----------QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR  485 (626)
T ss_pred             eEEEeeccceEEEEecccc---eeEEEEecCC-----------ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence            8999999999999888763   2223322233           8999999999999999999999999998643 44333


Q ss_pred             CC-CCccceEEEEECCCCCEEEEEecc
Q psy12911        299 SE-AMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       299 ~~-~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                      .. .+..+|+.+.||+|+++|.+-++|
T Consensus       486 ~~k~~gs~ithLDwS~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  486 VGKCSGSPITHLDWSSDSQFLVSNSGD  512 (626)
T ss_pred             eeeecCceeEEeeecCCCceEEeccCc
Confidence            32 334799999999999999998854

>KOG0639|consensus

Probab=99.94  E-value=2.2e-26  Score=185.85  Aligned_cols=237  Identities=14%  Similarity=0.151  Sum_probs=203.9

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS  107 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  107 (356)
                      ..+.|+++...|||   +.|++|+.-.++.|||+......+...+....-..++++.+||.+..+++..||.|.|||+..
T Consensus       464 rdnyiRSckL~pdg---rtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn  540 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDG---RTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN  540 (705)
T ss_pred             cccceeeeEecCCC---ceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence            46789999999999   999999999999999998865555556665566788999999999999999999999999999


Q ss_pred             Cceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEe--cCCCeEEEEecCCeEEE
Q psy12911        108 NQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCAD--VDYPLAVVGTAGRGIVL  184 (356)
Q Consensus       108 ~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~i  184 (356)
                      ...++ +.+|...+.||..+  ++|..|.+|+-|++||.||+++++.+........++++.  +.++++++|-.++.+.+
T Consensus       541 q~~VrqfqGhtDGascIdis--~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vev  618 (705)
T KOG0639|consen  541 QTLVRQFQGHTDGASCIDIS--KDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEV  618 (705)
T ss_pred             ceeeecccCCCCCceeEEec--CCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEE
Confidence            88887 89999999999999  999999999999999999999999888888877777665  55679999999999999


Q ss_pred             EeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccce
Q psy12911        185 YQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAV  264 (356)
Q Consensus       185 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  264 (356)
                      .......   +.....|..-|.++.|.+.    +.++++.+.|..+..|....+  ..++..+...            .|
T Consensus       619 lh~skp~---kyqlhlheScVLSlKFa~c----GkwfvStGkDnlLnawrtPyG--asiFqskE~S------------sV  677 (705)
T KOG0639|consen  619 LHTSKPE---KYQLHLHESCVLSLKFAYC----GKWFVSTGKDNLLNAWRTPYG--ASIFQSKESS------------SV  677 (705)
T ss_pred             EecCCcc---ceeecccccEEEEEEeccc----CceeeecCchhhhhhccCccc--cceeeccccC------------cc
Confidence            8887653   2333457788999999999    899999999999999987655  3444444333            79


Q ss_pred             EEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        265 NGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       265 ~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                      .++.+|.|.+++++|+.|....||.+
T Consensus       678 lsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  678 LSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eeeeeccCceEEEecCCCcceEEEEE
Confidence            99999999999999999998888875

>KOG0650|consensus

Probab=99.94  E-value=8.9e-25  Score=180.09  Aligned_cols=282  Identities=18%  Similarity=0.206  Sum_probs=212.6

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCC--eEEE
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT--KVFM   93 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~   93 (356)
                      +.|.....++.||++.|.|+...|.|   .+|++|+.||+|+||.+.+ +.++ +.+. ..+.|.|++|+|.+.  .||+
T Consensus       387 PFPt~~~lvyrGHtg~Vr~iSvdp~G---~wlasGsdDGtvriWEi~T-gRcv-r~~~-~d~~I~~vaw~P~~~~~vLAv  460 (733)
T KOG0650|consen  387 PFPTRCALVYRGHTGLVRSISVDPSG---EWLASGSDDGTVRIWEIAT-GRCV-RTVQ-FDSEIRSVAWNPLSDLCVLAV  460 (733)
T ss_pred             CCcceeeeeEeccCCeEEEEEecCCc---ceeeecCCCCcEEEEEeec-ceEE-EEEe-ecceeEEEEecCCCCceeEEE
Confidence            44555667889999999999999999   9999999999999999998 3333 4443 467999999999665  3443


Q ss_pred             EcCCCeEEEEEcCCC---------------------------------c-----eeeecccCCCeeEEEEEeCCCCCeEE
Q psy12911         94 AGCDKTVKCWDLASN---------------------------------Q-----SMQVAQHDAPVKTCHWIKAPNYTCLM  135 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~---------------------------------~-----~~~~~~~~~~v~~~~~~~~~~~~~l~  135 (356)
                      +- +..+.|-+..-|                                 +     ......|...|..+.|+  ..|.+|+
T Consensus       461 A~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH--rkGDYla  537 (733)
T KOG0650|consen  461 AV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH--RKGDYLA  537 (733)
T ss_pred             Ee-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee--cCCceEE
Confidence            33 333444433211                                 0     01134578899999999  9999999


Q ss_pred             EEECC---CeEEEEeCCCCCceEEEe---CCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEE
Q psy12911        136 TGSWD---KTLKFWDLRTPQPIMTIN---LPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIA  209 (356)
Q Consensus       136 ~~~~d---g~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  209 (356)
                      +...+   ..|.|.++...+...-|.   +......+.+...++++++. ..|++||+..+....+..  .....+..++
T Consensus       538 tV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~--tg~kwiS~ms  614 (733)
T KOG0650|consen  538 TVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL--TGSKWISSMS  614 (733)
T ss_pred             EeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHh--cCCeeeeeee
Confidence            97764   469999987765544442   22234445555567777665 789999998753322222  3345688999


Q ss_pred             eecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911        210 IFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD  289 (356)
Q Consensus       210 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd  289 (356)
                      ++|.    |..+++++.|+.+..+|++..+ ++.+++..|..           .+++++||+.-.++++|+.||++.|+.
T Consensus       615 ihp~----GDnli~gs~d~k~~WfDldlss-kPyk~lr~H~~-----------avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  615 IHPN----GDNLILGSYDKKMCWFDLDLSS-KPYKTLRLHEK-----------AVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             ecCC----CCeEEEecCCCeeEEEEcccCc-chhHHhhhhhh-----------hhhhhhhccccceeeeecCCCcEEEEe
Confidence            9999    8899999999999999998765 77888999988           899999999999999999999999985


Q ss_pred             cC------cc---eecCCCCCCccc----eEEEEECCCCCEEEEEeccC
Q psy12911        290 KD------AR---TKLKPSEAMDMS----ISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       290 ~~------~~---~~~~~~~~~~~~----v~~~~~s~~~~~l~~~s~~d  325 (356)
                      -.      ..   -+++.+++|...    |.++.|+|...+|++++.|+
T Consensus       679 g~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~  727 (733)
T KOG0650|consen  679 GMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG  727 (733)
T ss_pred             eeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc
Confidence            22      11   346778888654    99999999999999999875

>KOG2048|consensus

Probab=99.94  E-value=5.3e-24  Score=177.85  Aligned_cols=273  Identities=14%  Similarity=0.184  Sum_probs=217.9

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccC-CcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM-SEPVLDVAWIDDGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vw  103 (356)
                      ..--..+|.|++|+...   +.||.+-.||.|.+|++.. +..+...+.++ +..|.+++|++ +..|++.+.+|.|.-|
T Consensus        21 ~d~~Ps~I~slA~s~kS---~~lAvsRt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~Ew   95 (691)
T KOG2048|consen   21 VDYKPSEIVSLAYSHKS---NQLAVSRTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEW   95 (691)
T ss_pred             EeeeccceEEEEEeccC---CceeeeccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEE
Confidence            33445799999999998   8999999999999999987 45555666655 45899999995 5578888999999999


Q ss_pred             EcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC---CCeeEEEecCCC--eEEEEe
Q psy12911        104 DLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL---PERCYCADVDYP--LAVVGT  177 (356)
Q Consensus       104 d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~  177 (356)
                      |+.+.+... .....+.|++++.+  |.+..++.|++||.+..++...++.......   ..+++++++.+.  .++.|+
T Consensus        96 Dl~~lk~~~~~d~~gg~IWsiai~--p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs  173 (691)
T KOG2048|consen   96 DLHTLKQKYNIDSNGGAIWSIAIN--PENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS  173 (691)
T ss_pred             ecccCceeEEecCCCcceeEEEeC--CccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence            999998876 66678899999999  8889999999999888888877765544332   357888888775  589999


Q ss_pred             cCCeEEEEeCCCCcccccc------ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911        178 AGRGIVLYQLEGKPQEFKK------TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS  251 (356)
Q Consensus       178 ~d~~i~i~d~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  251 (356)
                      .||.|++||...+......      .......-+.++.+..+     ..+++|...|.|.+||...+  ..+..+..|..
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-----~tI~sgDS~G~V~FWd~~~g--TLiqS~~~h~a  246 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-----STIASGDSAGTVTFWDSIFG--TLIQSHSCHDA  246 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-----CcEEEecCCceEEEEcccCc--chhhhhhhhhc
Confidence            9999999999987644311      11112344677777765     58999999999999999877  56888888887


Q ss_pred             CCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee----cCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK----LKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                                 -|.+++..+++.++++++.|+.|.-|...+.+.    ......|...|++++..++  .|++|+.|
T Consensus       247 -----------dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d  310 (691)
T KOG2048|consen  247 -----------DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRD  310 (691)
T ss_pred             -----------ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEeccee
Confidence                       899999999999999999999999998776533    3344578889999998887  56666543

>KOG2106|consensus

Probab=99.94  E-value=4.6e-24  Score=172.52  Aligned_cols=232  Identities=19%  Similarity=0.277  Sum_probs=183.2

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  108 (356)
                      +.-|.|++|.++|    -+++|..+|.|.||+..+  ....+....|.+.|.+++...+|. |++|+.|..|..||-.-.
T Consensus       246 kk~Vl~v~F~eng----dviTgDS~G~i~Iw~~~~--~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~  318 (626)
T KOG2106|consen  246 KKFVLCVTFLENG----DVITGDSGGNILIWSKGT--NRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYR  318 (626)
T ss_pred             ceEEEEEEEcCCC----CEEeecCCceEEEEeCCC--ceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecccccc
Confidence            3679999999997    688999999999999966  455555569999999999999995 566999999999983211


Q ss_pred             c-----------------------------------------eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEe
Q psy12911        109 Q-----------------------------------------SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD  147 (356)
Q Consensus       109 ~-----------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd  147 (356)
                      +                                         .+...+|......++.+  |+.+++++++.|+.+++|+
T Consensus       319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h--ps~~q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH--PSKNQLLTCGQDKHVRLWN  396 (626)
T ss_pred             ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC--CChhheeeccCcceEEEcc
Confidence            0                                         01134678888999998  8889999999999999999


Q ss_pred             CCCCCceEEEeCCC--eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee
Q psy12911        148 LRTPQPIMTINLPE--RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS  225 (356)
Q Consensus       148 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  225 (356)
                        ..+++.+.....  .+..+.+.+ .+++|+..|...+.|.++........  . ..++++++++|+    +..+++|+
T Consensus       397 --~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~--d-~~~ls~v~ysp~----G~~lAvgs  466 (626)
T KOG2106|consen  397 --DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT--D-NEQLSVVRYSPD----GAFLAVGS  466 (626)
T ss_pred             --CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe--c-CCceEEEEEcCC----CCEEEEec
Confidence              556665555444  455556666 99999999999999999854322222  2 788999999999    89999999


Q ss_pred             cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        226 VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       226 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                      .|+.|++|.++....+....-+++..           +|+.+.||+|+++|.+-+.|-.|..|..
T Consensus       467 ~d~~iyiy~Vs~~g~~y~r~~k~~gs-----------~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  467 HDNHIYIYRVSANGRKYSRVGKCSGS-----------PITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             CCCeEEEEEECCCCcEEEEeeeecCc-----------eeEEeeecCCCceEEeccCceEEEEEcc
Confidence            99999999997664333333333333           8999999999999999999999999943

>KOG4328|consensus

Probab=99.94  E-value=1.4e-24  Score=173.28  Aligned_cols=294  Identities=10%  Similarity=0.117  Sum_probs=215.6

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC--ceeeeeeccCCcceeEEEEcc-CCCeEEEE
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWID-DGTKVFMA   94 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~   94 (356)
                      ......+.+.+.+.|++++|+|.. +.+++|+|..-|+|-+||+.+.+  ..-...+..|..+|.++.|+| +-..+++.
T Consensus       175 ~~~~~~v~kv~~~Rit~l~fHPt~-~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  175 DYRILNVAKVTDRRITSLAFHPTE-NRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             cceecceeEecccceEEEEecccC-cceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence            344555667789999999999987 12689999999999999995322  333456778999999999999 55689999


Q ss_pred             cCCCeEEEEEcCCCceee---ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc-eEEEeCCC-eeEEEecC
Q psy12911         95 GCDKTVKCWDLASNQSMQ---VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP-IMTINLPE-RCYCADVD  169 (356)
Q Consensus        95 ~~dg~i~vwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~-~~~~~~~~  169 (356)
                      +.||+|++-|++......   .......+.++.|+  .+...++.++.=|...+||++++.. ...+..+. .+..++.+
T Consensus       254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~--~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N  331 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS--AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN  331 (498)
T ss_pred             ccCceeeeeeecchhhHHHhhcCccceeeeecccc--CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence            999999999999875443   22345567788888  7777788888778999999998754 44444443 33334433


Q ss_pred             --C-CeEEEEecCCeEEEEeCCCCcccc--ccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC-CCCCCc
Q psy12911        170 --Y-PLAVVGTAGRGIVLYQLEGKPQEF--KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP-ANPKDN  243 (356)
Q Consensus       170 --~-~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~-~~~~~~  243 (356)
                        . .++++++.|++.+|||++.-....  ......|...|.+..|+|.    +..+++.+.|..|+|||..- ....+.
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs----~gtl~TT~~D~~IRv~dss~~sa~~~p  407 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS----GGTLLTTCQDNEIRVFDSSCISAKDEP  407 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC----CCceEeeccCCceEEeecccccccCCc
Confidence              3 489999999999999998754322  2344568889999999999    55699999999999999841 111122


Q ss_pred             ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCcc-ceEE-EEECCCCCEEEEE
Q psy12911        244 FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDM-SIST-CALNHNGQIFAYA  321 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~-~~~s~~~~~l~~~  321 (356)
                      .....|....     ..-......+|.|+..++++|..-..|-|+|-+.++.+..+..... .|.+ ..|+|-+..+++|
T Consensus       408 ~~~I~Hn~~t-----~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG  482 (498)
T KOG4328|consen  408 LGTIPHNNRT-----GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAG  482 (498)
T ss_pred             cceeeccCcc-----cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceecc
Confidence            2223333211     0101345678999999999999999999999998887777654433 4544 4899999988888


Q ss_pred             ec
Q psy12911        322 VS  323 (356)
Q Consensus       322 s~  323 (356)
                      ++
T Consensus       483 ~~  484 (498)
T KOG4328|consen  483 GN  484 (498)
T ss_pred             CC
Confidence            75

>KOG0308|consensus

Probab=99.94  E-value=5.8e-26  Score=188.62  Aligned_cols=210  Identities=17%  Similarity=0.243  Sum_probs=186.2

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEE-ccCCCeEEEEcCCCe
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAW-IDDGTKVFMAGCDKT   99 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~   99 (356)
                      ....++.|.+.|+.+....++   +.|+++|.|-+|++|+....+.-...++..|...|.|+++ .++...+|+|+.|+.
T Consensus        65 ~~asme~HsDWVNDiiL~~~~---~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~  141 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNG---KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRK  141 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCC---CceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCcc
Confidence            466788999999999999998   9999999999999999988554556788899999999999 778889999999999


Q ss_pred             EEEEEcCCCce--e---------eec-ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEe
Q psy12911        100 VKCWDLASNQS--M---------QVA-QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCAD  167 (356)
Q Consensus       100 i~vwd~~~~~~--~---------~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  167 (356)
                      |.+||++++..  +         .+. ++...|++++.+  +.|..|++|+..+.+++||.++++.+..+.+        
T Consensus       142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrG--------  211 (735)
T KOG0308|consen  142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG--------  211 (735)
T ss_pred             EEEEEccCcchhhhhhccccccccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeec--------
Confidence            99999997722  1         122 788899999999  8999999999999999999999988877764        


Q ss_pred             cCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911        168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK  247 (356)
Q Consensus       168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  247 (356)
                                                       |...|.++..+++    +..+++++.||+|++||+...  +++.++.
T Consensus       212 ---------------------------------HTdNVr~ll~~dD----Gt~~ls~sSDgtIrlWdLgqQ--rCl~T~~  252 (735)
T KOG0308|consen  212 ---------------------------------HTDNVRVLLVNDD----GTRLLSASSDGTIRLWDLGQQ--RCLATYI  252 (735)
T ss_pred             ---------------------------------cccceEEEEEcCC----CCeEeecCCCceEEeeecccc--ceeeeEE
Confidence                                             4567888889998    889999999999999999776  7899999


Q ss_pred             eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc
Q psy12911        248 CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~  293 (356)
                      .|..           .|+++..+|+-..+++|+.||.|..=|+.+.
T Consensus       253 vH~e-----------~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  253 VHKE-----------GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eccC-----------ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            9998           8999999999999999999999999999874

>KOG0302|consensus

Probab=99.94  E-value=1.5e-24  Score=169.13  Aligned_cols=250  Identities=14%  Similarity=0.222  Sum_probs=185.2

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC--------------CceeeeeeccCCcceeEEEEccC-CC
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN--------------GKTIPKSMQGMSEPVLDVAWIDD-GT   89 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--------------~~~~~~~~~~~~~~v~~~~~s~~-~~   89 (356)
                      .-+|.+.|+.+.-++-+ +..+.++-+..|.|.||++...              ....+.++.+|...=++++|||- ..
T Consensus       147 ~i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g  225 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG  225 (440)
T ss_pred             ccccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence            34688899999888875 2357777789999999998541              13455678899999999999992 23


Q ss_pred             eEEEEcCCCeEEEEEcCCCceee----ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC---CceEEEeCCCe
Q psy12911         90 KVFMAGCDKTVKCWDLASNQSMQ----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP---QPIMTINLPER  162 (356)
Q Consensus        90 ~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~  162 (356)
                      .|++|..-+.|++|...++....    +.+|+..|-.++|+| .....|++|+.||+|+|||+|.+   .++.+-.....
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSp-tE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD  304 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSP-TEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD  304 (440)
T ss_pred             ccccCccccceEeeeeccCceeecCccccccccchhhhccCC-ccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence            58888888999999999887542    678999999999997 44568999999999999999998   34444223334


Q ss_pred             eEEEecC--CCeEEEEecCCeEEEEeCCCCccc-cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC
Q psy12911        163 CYCADVD--YPLAVVGTAGRGIVLYQLEGKPQE-FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN  239 (356)
Q Consensus       163 ~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~  239 (356)
                      +-.++++  .++|++|+.||+++|||++.-+.. .......|..+|+++.|+|..   ...+++++.|.+|.+||+....
T Consensus       305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e---~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE---DSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc---CceEEeccCCCcEEEEEeeccC
Confidence            4455554  458999999999999999975432 122334688999999999984   5689999999999999995432


Q ss_pred             C--------------CCcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEE
Q psy12911        240 P--------------KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWD  289 (356)
Q Consensus       240 ~--------------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd  289 (356)
                      -              .+.+-+-.|.++         ..+..+.|++.- .+|++.+.|| +.||.
T Consensus       382 D~ee~~~~a~~~L~dlPpQLLFVHqGQ---------ke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  382 DEEEIDQEAAEGLQDLPPQLLFVHQGQ---------KEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             ChhhhccccccchhcCCceeEEEecch---------hHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            1              011122233321         258889999875 6888888888 45553

>KOG1445|consensus

Probab=99.94  E-value=3.8e-25  Score=183.77  Aligned_cols=138  Identities=20%  Similarity=0.356  Sum_probs=110.1

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCce-e---eeeeccCCcceeEEEEccCCCeEEE
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKT-I---PKSMQGMSEPVLDVAWIDDGTKVFM   93 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~---~~~~~~~~~~v~~~~~s~~~~~l~~   93 (356)
                      ..+.+..+.+|.+.|+.+.|+|..  ..+||+|+.|..|+||.+..+-.+ +   ...+.+..-.|.++.|+|...-|+.
T Consensus        68 ~~r~i~~l~~H~d~VtDl~FspF~--D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~  145 (1012)
T KOG1445|consen   68 RTRDIGILAAHGDQVTDLGFSPFA--DELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILA  145 (1012)
T ss_pred             cccccceeecccceeeccCccccc--hhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEE
Confidence            345778899999999999999976  479999999999999999842211 1   1223334457899999996555555


Q ss_pred             EcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeC
Q psy12911         94 AGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINL  159 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~  159 (356)
                      .+..|+++|||+.+++.+. +.+|...|.++.|+  .||.+|++++.|..|+|||.+.. +.++..+.
T Consensus       146 s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~Ws--eDG~llatscKdkqirifDPRa~~~piQ~te~  211 (1012)
T KOG1445|consen  146 SGAHGSVYITDISTQKTAVELSGHTDKVQSADWS--EDGKLLATSCKDKQIRIFDPRASMEPIQTTEG  211 (1012)
T ss_pred             eccCceEEEEEcccCceeecccCCchhhhccccc--cCCceEeeecCCcceEEeCCccCCCccccccc
Confidence            5667999999999988776 88999999999999  99999999999999999998753 45554443

>KOG0305|consensus

Probab=99.94  E-value=1.4e-24  Score=180.66  Aligned_cols=222  Identities=17%  Similarity=0.279  Sum_probs=191.9

Q ss_pred             EEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecc-cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC
Q psy12911         81 DVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL  159 (356)
Q Consensus        81 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  159 (356)
                      -+.|+. .+.|+.|. ...|++|+..+++...+.. +...|+++.|+  ++|.+|++|..+|.|.|||..+.+.+..+..
T Consensus       182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws--~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~  257 (484)
T KOG0305|consen  182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWS--PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG  257 (484)
T ss_pred             Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEEC--CCCCEEEEeecCCeEEEEehhhccccccccC
Confidence            456774 34566654 5689999999998766433 38999999999  9999999999999999999999999999888


Q ss_pred             --CCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        160 --PERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       160 --~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                        ..++.++++....+.+|+.++.|..+|++....... ....|...|..+.|+++    +.++++|+.|+.+.|||...
T Consensus       258 ~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d----~~~lASGgnDN~~~Iwd~~~  332 (484)
T KOG0305|consen  258 SHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPD----GNQLASGGNDNVVFIWDGLS  332 (484)
T ss_pred             CcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCC----CCeeccCCCccceEeccCCC
Confidence              447889999999999999999999999999876666 46678999999999999    89999999999999999954


Q ss_pred             CCCCCcceeeeecCCCCCCCcccccceEEEEEeCC-CCEEEEEc--CCCeEEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911        238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV-HGTLATVG--SEGTFSFWDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                      .  .+...+..|..           .|..++|+|- ..+||+|+  .|++|++||..+++.+..+.. .+.|.+|.|++.
T Consensus       333 ~--~p~~~~~~H~a-----------AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~  398 (484)
T KOG0305|consen  333 P--EPKFTFTEHTA-----------AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKK  398 (484)
T ss_pred             c--cccEEEeccce-----------eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCC
Confidence            4  77889999998           9999999995 47888875  699999999999999988864 567999999999


Q ss_pred             CCEEEEEeccC
Q psy12911        315 GQIFAYAVSYD  325 (356)
Q Consensus       315 ~~~l~~~s~~d  325 (356)
                      .+-|+++.++.
T Consensus       399 ~kEi~sthG~s  409 (484)
T KOG0305|consen  399 YKELLSTHGYS  409 (484)
T ss_pred             CCEEEEecCCC
Confidence            99999988754

>KOG4378|consensus

Probab=99.94  E-value=1.1e-24  Score=175.97  Aligned_cols=263  Identities=14%  Similarity=0.160  Sum_probs=203.5

Q ss_pred             CeeEEEecCCCCCceEEEEE--eCCCeEEEEeccCCC--ceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911         31 SISCMAFSPSTLPQYFLIAG--SWDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~--~~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  106 (356)
                      .|.++.|+...    .|+++  +.|..+++|.-....  .+.+....+.  .-.|++......++++|+..+.|+|||++
T Consensus        36 g~~s~~w~~~n----~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~  109 (673)
T KOG4378|consen   36 GDFSFNWQRRN----FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLR  109 (673)
T ss_pred             cceeeeccccc----eEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhH
Confidence            49999999885    45555  467789999765421  1222222222  33444444455899999999999999999


Q ss_pred             CCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-ee---EEEecCCC-eEEEEecCC
Q psy12911        107 SNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RC---YCADVDYP-LAVVGTAGR  180 (356)
Q Consensus       107 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~---~~~~~~~~-~~~~~~~d~  180 (356)
                      ...+.+ +.+|...|+++.++  ....+|++++..|.|.|..+.++.....|..+. ..   +.+++... .|.+++.+|
T Consensus       110 ~kl~hr~lkdh~stvt~v~YN--~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G  187 (673)
T KOG4378|consen  110 AKLIHRFLKDHQSTVTYVDYN--NTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKG  187 (673)
T ss_pred             HHHHhhhccCCcceeEEEEec--CCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCC
Confidence            666665 78899999999999  888999999999999999999998888887663 22   23333333 677789999


Q ss_pred             eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCccc
Q psy12911        181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQD  260 (356)
Q Consensus       181 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      .+.+||+........ ....|..+...++|+|..   ..++++.+.|..|.+||....  .....+....          
T Consensus       188 ~VtlwDv~g~sp~~~-~~~~HsAP~~gicfspsn---e~l~vsVG~Dkki~~yD~~s~--~s~~~l~y~~----------  251 (673)
T KOG4378|consen  188 AVTLWDVQGMSPIFH-ASEAHSAPCRGICFSPSN---EALLVSVGYDKKINIYDIRSQ--ASTDRLTYSH----------  251 (673)
T ss_pred             eEEEEeccCCCcccc-hhhhccCCcCcceecCCc---cceEEEecccceEEEeecccc--cccceeeecC----------
Confidence            999999998754433 344788899999999985   678999999999999999865  3333333332          


Q ss_pred             ccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc-eecCCCCCCccceEEEEECCCCCEEEE
Q psy12911        261 IYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR-TKLKPSEAMDMSISTCALNHNGQIFAY  320 (356)
Q Consensus       261 ~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~  320 (356)
                        +...++|+++|.+|++|...|.|..||++.. .++..+.+|...|++++|-|.- .+++
T Consensus       252 --Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~-tvlt  309 (673)
T KOG4378|consen  252 --PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP-TVLT  309 (673)
T ss_pred             --CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc-eeee
Confidence              7999999999999999999999999999854 5688888999999999998775 4444

>KOG0269|consensus

Probab=99.93  E-value=1.8e-25  Score=189.20  Aligned_cols=245  Identities=15%  Similarity=0.183  Sum_probs=190.6

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-ceeeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEEEEEcCCC
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-KTIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~  108 (356)
                      .+..++|+...  .++|||++..|.|.+||+.... ..+...+..|...++++.|++ ...+|++|+.||+|++||++..
T Consensus        89 S~~DVkW~~~~--~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   89 SAADVKWGQLY--SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             ehhhcccccch--hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence            44566777433  4899999999999999997632 344467889999999999998 4568999999999999999988


Q ss_pred             ceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeCCC-eeEEEecC--CCeEEEEecCCeEE
Q psy12911        109 QSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINLPE-RCYCADVD--YPLAVVGTAGRGIV  183 (356)
Q Consensus       109 ~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~-~~~~~~~~--~~~~~~~~~d~~i~  183 (356)
                      +... +.+..+.|+++.|+| ..+..++++.+.|.+++||++.. ++...+..|. .++|+++.  ..+|++|+.|+.|+
T Consensus       167 ~S~~t~~~nSESiRDV~fsp-~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vk  245 (839)
T KOG0269|consen  167 KSKSTFRSNSESIRDVKFSP-GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVK  245 (839)
T ss_pred             cccccccccchhhhceeecc-CCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEE
Confidence            7665 777889999999997 45788999999999999999986 4556666554 45555544  46999999999999


Q ss_pred             EEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee--cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccc
Q psy12911        184 LYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS--VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDI  261 (356)
Q Consensus       184 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (356)
                      |||+.+...... .......++.++.|-|..   ...|++++  .|-.|+|||++..- -+..++..|+.          
T Consensus       246 iWd~t~~~~~~~-~tInTiapv~rVkWRP~~---~~hLAtcsmv~dtsV~VWDvrRPY-IP~~t~~eH~~----------  310 (839)
T KOG0269|consen  246 IWDMTDSRAKPK-HTINTIAPVGRVKWRPAR---SYHLATCSMVVDTSVHVWDVRRPY-IPYATFLEHTD----------  310 (839)
T ss_pred             EEeccCCCccce-eEEeecceeeeeeeccCc---cchhhhhhccccceEEEEeecccc-ccceeeeccCc----------
Confidence            999986543221 112345788999999985   35677665  47789999997543 56788899988          


Q ss_pred             cceEEEEEeC-CCCEEEEEcCCCeEEEEEcCcce
Q psy12911        262 YAVNGIVFHP-VHGTLATVGSEGTFSFWDKDART  294 (356)
Q Consensus       262 ~~i~~i~~sp-~~~~l~s~~~dg~i~iwd~~~~~  294 (356)
                       .++.++|-. |-..|.+++.||+|..-.++++.
T Consensus       311 -~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  311 -SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             -cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence             889999965 34678899999988766655543

>KOG0301|consensus

Probab=99.93  E-value=2.2e-24  Score=180.62  Aligned_cols=237  Identities=17%  Similarity=0.211  Sum_probs=189.6

Q ss_pred             ceEEeCCCCCCeeE-EEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         21 DFEVVSPPEDSISC-MAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        21 ~~~~~~~h~~~V~~-~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      ....+.+|.+-|.+ ++|-+..  .-.|++|+.|+++.+|....  ..+...+.+|...|.+++...++. +++||.|.+
T Consensus        49 ~~~~~~~~~g~i~~~i~y~e~~--~~~l~~g~~D~~i~v~~~~~--~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T  123 (745)
T KOG0301|consen   49 ETHAFEGPKGFIANSICYAESD--KGRLVVGGMDTTIIVFKLSQ--AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST  123 (745)
T ss_pred             cceecccCcceeeccceecccc--CcceEeecccceEEEEecCC--CCchhhhhccccceeeeecCCcCc-eEecccccc
Confidence            34557788888888 8887632  25799999999999999987  455689999999999999888886 999999999


Q ss_pred             EEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEE-Eec-CCCeEEEEe
Q psy12911        100 VKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYC-ADV-DYPLAVVGT  177 (356)
Q Consensus       100 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~  177 (356)
                      +++|....-.. .+.+|+..|+++...  |++ .++||+.|.+|++|.  .++.++++.+|..++. +.. +...+++++
T Consensus       124 akvW~~~~l~~-~l~gH~asVWAv~~l--~e~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~flScs  197 (745)
T KOG0301|consen  124 AKVWRIGELVY-SLQGHTASVWAVASL--PEN-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHFLSCS  197 (745)
T ss_pred             eEEecchhhhc-ccCCcchheeeeeec--CCC-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCeEeec
Confidence            99998643222 288999999999998  776 899999999999996  4889999999886543 333 445899999


Q ss_pred             cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCC
Q psy12911        178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG  257 (356)
Q Consensus       178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  257 (356)
                      .||.|++|++.+..   ......|...+.+++...+    ...+++++.|++++||+.+    .+.+.+.....      
T Consensus       198 NDg~Ir~w~~~ge~---l~~~~ghtn~vYsis~~~~----~~~Ivs~gEDrtlriW~~~----e~~q~I~lPtt------  260 (745)
T KOG0301|consen  198 NDGSIRLWDLDGEV---LLEMHGHTNFVYSISMALS----DGLIVSTGEDRTLRIWKKD----ECVQVITLPTT------  260 (745)
T ss_pred             CCceEEEEeccCce---eeeeeccceEEEEEEecCC----CCeEEEecCCceEEEeecC----ceEEEEecCcc------
Confidence            99999999995542   2223357788899996666    6799999999999999886    34455544443      


Q ss_pred             cccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       258 ~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                           .|+++.+-++|. +++|+.||.||||...
T Consensus       261 -----siWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  261 -----SIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             -----ceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence                 689999888876 6678889999999876

>KOG2055|consensus

Probab=99.93  E-value=3.7e-24  Score=171.18  Aligned_cols=257  Identities=13%  Similarity=0.190  Sum_probs=202.8

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCC-cceeEEEEccCCCeEEEE
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS-EPVLDVAWIDDGTKVFMA   94 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~   94 (356)
                      ...+..++.+.--..+|.+++|.|+|  ...+++++....++.||+.+.....+..+.++. ..+.....++++++|+..
T Consensus       244 Gk~N~~lqS~~l~~fPi~~a~f~p~G--~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~  321 (514)
T KOG2055|consen  244 GKVNPKLQSIHLEKFPIQKAEFAPNG--HSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIA  321 (514)
T ss_pred             CccChhheeeeeccCccceeeecCCC--ceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEc
Confidence            33444555555567799999999999  238999999999999999986555555566665 356778889999999999


Q ss_pred             cCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC----CeeEEEecCC
Q psy12911         95 GCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP----ERCYCADVDY  170 (356)
Q Consensus        95 ~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~  170 (356)
                      +..|.|.+....+++.+....-.+.|..++|+  .+++.|++++.+|.|.+||+++..+++.+...    ...+|.+.++
T Consensus       322 G~~G~I~lLhakT~eli~s~KieG~v~~~~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng  399 (514)
T KOG2055|consen  322 GNNGHIHLLHAKTKELITSFKIEGVVSDFTFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNG  399 (514)
T ss_pred             ccCceEEeehhhhhhhhheeeeccEEeeEEEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCC
Confidence            99999999999999999888889999999999  99999999999999999999999999988754    3577888999


Q ss_pred             CeEEEEecCCeEEEEeCCCC-----ccccccccCcccccceEEEeecCCCCCCCeEEEeec--CCeEEEEEeCCCCCCCc
Q psy12911        171 PLAVVGTAGRGIVLYQLEGK-----PQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV--EGRVAIQYVNPANPKDN  243 (356)
Q Consensus       171 ~~~~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--dg~i~i~~~~~~~~~~~  243 (356)
                      .++++|+..|.|.|||.++.     +.+...+. .....|+++.|+++    ..+|+.++.  ...+++..+...+  ..
T Consensus       400 ~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-NLtt~Itsl~Fn~d----~qiLAiaS~~~knalrLVHvPS~T--VF  472 (514)
T KOG2055|consen  400 SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-NLTTAITSLQFNHD----AQILAIASRVKKNALRLVHVPSCT--VF  472 (514)
T ss_pred             ceEEeccCcceEEEeccchhhccCCCCchhhhh-hhheeeeeeeeCcc----hhhhhhhhhccccceEEEecccee--ee
Confidence            99999999999999997653     22222222 45678999999999    788888875  5567776654332  11


Q ss_pred             ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        244 FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      ..++....        ....|+|++|||.+.+||.|..+|.|.+|.+.
T Consensus       473 sNfP~~n~--------~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  473 SNFPTSNT--------KVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ccCCCCCC--------cccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            11111110        11269999999999999999999999999875

>KOG1539|consensus

Probab=99.93  E-value=5.3e-23  Score=175.80  Aligned_cols=293  Identities=15%  Similarity=0.191  Sum_probs=210.7

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      ..++.-.+.|+++. +|.. .-+.++.|+.+|.+.||++.+  ...+.+++++...|+++.=+|-=..++.|..+|+|.+
T Consensus       153 ~~~~~~~~~Ital~-HP~T-YLNKIvvGs~~G~lql~Nvrt--~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vii  228 (910)
T KOG1539|consen  153 TFLKVEGDFITALL-HPST-YLNKIVVGSSQGRLQLWNVRT--GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVII  228 (910)
T ss_pred             eeeeccCCceeeEe-cchh-heeeEEEeecCCcEEEEEecc--CcEEEEecccccceeEeccCCcceEEEEeccCceEEE
Confidence            33444344488874 5543 125689999999999999998  5666899999999999999998889999999999999


Q ss_pred             EEcCCCceeeecccC-CCeeEEEEEeCCCCCe-EEEEECCCeEEEEeCCCCCceEEEe-CCC---eeEEEecCCCeEEEE
Q psy12911        103 WDLASNQSMQVAQHD-APVKTCHWIKAPNYTC-LMTGSWDKTLKFWDLRTPQPIMTIN-LPE---RCYCADVDYPLAVVG  176 (356)
Q Consensus       103 wd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~  176 (356)
                      ++++.++.+....|. ++|++++|.  .||+. +++|+..|.+-+||++..+.+..+. .|.   ....+....+.++++
T Consensus       229 fNlK~dkil~sFk~d~g~VtslSFr--tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta  306 (910)
T KOG1539|consen  229 FNLKFDKILMSFKQDWGRVTSLSFR--TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA  306 (910)
T ss_pred             EEcccCcEEEEEEccccceeEEEec--cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec
Confidence            999999999877775 999999998  88765 5556666999999999877665554 221   112222333455555


Q ss_pred             ecCCeEEEEeCCCCc-----------------------------------------------------------------
Q psy12911        177 TAGRGIVLYQLEGKP-----------------------------------------------------------------  191 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~-----------------------------------------------------------------  191 (356)
                      +.|+.+++|=.+++.                                                                 
T Consensus       307 ~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~  386 (910)
T KOG1539|consen  307 GADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN  386 (910)
T ss_pred             cCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence            555554444332110                                                                 


Q ss_pred             -----------------------------------------------ccccccc----CcccccceEEEeecCCCCCCCe
Q psy12911        192 -----------------------------------------------QEFKKTE----SPLKYQNRCIAIFRDKKKQPAG  220 (356)
Q Consensus       192 -----------------------------------------------~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~  220 (356)
                                                                     .-.....    ......+++++.++.    |+.
T Consensus       387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C----GNF  462 (910)
T KOG1539|consen  387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC----GNF  462 (910)
T ss_pred             ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc----Cce
Confidence                                                           0000000    001245677888888    788


Q ss_pred             EEEeecCCeEEEEEeCCCCCCCccee---eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce---
Q psy12911        221 YGLGSVEGRVAIQYVNPANPKDNFTF---KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART---  294 (356)
Q Consensus       221 ~~~~~~dg~i~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~---  294 (356)
                      .+.|+..|.|.+|++..+  ....++   ..|..           +|+.++...-++.+++++.+|.+.+||.++..   
T Consensus       463 ~~IG~S~G~Id~fNmQSG--i~r~sf~~~~ah~~-----------~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~  529 (910)
T KOG1539|consen  463 VFIGYSKGTIDRFNMQSG--IHRKSFGDSPAHKG-----------EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK  529 (910)
T ss_pred             EEEeccCCeEEEEEcccC--eeecccccCccccC-----------ceeEEEecCCCceEEEccCcceEEEEecCCcceee
Confidence            999999999999999766  223333   45655           89999998888999999999999999987532   


Q ss_pred             --------------------------------------ecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCC
Q psy12911        295 --------------------------------------KLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPN  336 (356)
Q Consensus       295 --------------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~  336 (356)
                                                            .++.+.+|.+.|++++|||||++|++++-|..   .+.||..
T Consensus       530 ~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t---Ir~wDlp  606 (910)
T KOG1539|consen  530 SLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST---IRTWDLP  606 (910)
T ss_pred             eeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc---EEEEecc
Confidence                                                  23456789999999999999999999997653   4445555


Q ss_pred             CCcee
Q psy12911        337 KGNAI  341 (356)
Q Consensus       337 ~~~~~  341 (356)
                      .+..|
T Consensus       607 t~~lI  611 (910)
T KOG1539|consen  607 TGTLI  611 (910)
T ss_pred             Cccee
Confidence            44444

>KOG0307|consensus

Probab=99.93  E-value=1.8e-25  Score=197.10  Aligned_cols=273  Identities=19%  Similarity=0.246  Sum_probs=211.4

Q ss_pred             EEEecCCCCCceEEEEEe----------CCCeEEEEeccCCCc----eeeeeeccCCcceeEEEEccCCCe----EEEEc
Q psy12911         34 CMAFSPSTLPQYFLIAGS----------WDNNVRCWEVEPNGK----TIPKSMQGMSEPVLDVAWIDDGTK----VFMAG   95 (356)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~   95 (356)
                      .++|+|++  ..+||+|.          .+.++.||.+.....    .....+. .....+.++|.+.+..    |+.|.
T Consensus        11 ~~awSp~~--~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~   87 (1049)
T KOG0307|consen   11 TFAWSPAS--PPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGL   87 (1049)
T ss_pred             eEEecCCC--chhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccc
Confidence            57899998  34677663          355677776654221    1222222 3567889999987765    88888


Q ss_pred             CCCeEEEEEcCC---Cce----eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE---eCCCeeEE
Q psy12911         96 CDKTVKCWDLAS---NQS----MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI---NLPERCYC  165 (356)
Q Consensus        96 ~dg~i~vwd~~~---~~~----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~  165 (356)
                      .||.|.+||...   +..    .+...|.+.|..+.|++ -.+++|++|+.||.|.|||+...+.-.+.   .....+.+
T Consensus        88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~-~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~  166 (1049)
T KOG0307|consen   88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP-FQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC  166 (1049)
T ss_pred             cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccc-cCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence            899999999875   221    23678999999999993 34459999999999999999886544443   23456788


Q ss_pred             EecCCC---eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC---eEEEEEeCCCC
Q psy12911        166 ADVDYP---LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG---RVAIQYVNPAN  239 (356)
Q Consensus       166 ~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg---~i~i~~~~~~~  239 (356)
                      ++++..   .+++++.+|.+.|||++.++..+..........+..++|+|+.   ...+++++.|.   .|.+||++...
T Consensus       167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~---aTql~~As~dd~~PviqlWDlR~as  243 (1049)
T KOG0307|consen  167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH---ATQLLVASGDDSAPVIQLWDLRFAS  243 (1049)
T ss_pred             eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC---ceeeeeecCCCCCceeEeecccccC
Confidence            888764   7889999999999999998766666665555678899999996   55677777654   58999998765


Q ss_pred             CCCcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCC-E
Q psy12911        240 PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQ-I  317 (356)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~  317 (356)
                       .+++++.+|..           .|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+....+++..+.|.|... .
T Consensus       244 -sP~k~~~~H~~-----------GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~  311 (1049)
T KOG0307|consen  244 -SPLKILEGHQR-----------GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSV  311 (1049)
T ss_pred             -Cchhhhccccc-----------ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcch
Confidence             67888899988           89999999977 8999999999999999999999999998889999999999887 4


Q ss_pred             EEEEeccC
Q psy12911        318 FAYAVSYD  325 (356)
Q Consensus       318 l~~~s~~d  325 (356)
                      ++.++-++
T Consensus       312 ~A~asfdg  319 (1049)
T KOG0307|consen  312 MAAASFDG  319 (1049)
T ss_pred             hhhheecc
Confidence            55555444

>KOG1274|consensus

Probab=99.93  E-value=2.6e-23  Score=179.47  Aligned_cols=238  Identities=15%  Similarity=0.156  Sum_probs=194.6

Q ss_pred             ccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC-ceeeecc-cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC
Q psy12911         73 QGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN-QSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT  150 (356)
Q Consensus        73 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  150 (356)
                      ..|...-+.++|.|+|++|++++.||.|++|+.... +.-.... +...|.+++.    .+.+|++|+.+++|.+|.+.+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~----~s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC----YSNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee----cccceEEeeccceEEEeeCCC
Confidence            358889999999999999999999999999998765 3333333 7888888884    456899999999999999988


Q ss_pred             CC---ceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC
Q psy12911        151 PQ---PIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE  227 (356)
Q Consensus       151 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d  227 (356)
                      ++   .+..+..+.+.++++.++..++.|+.|-.|++.++......  .....|..+|.++.++|.    +.+|++.+.|
T Consensus        86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--~~lrgh~apVl~l~~~p~----~~fLAvss~d  159 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--KVLRGHDAPVLQLSYDPK----GNFLAVSSCD  159 (933)
T ss_pred             CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh--eeecccCCceeeeeEcCC----CCEEEEEecC
Confidence            74   67888899999999999999999999999999999876543  334468999999999999    8999999999


Q ss_pred             CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC--Cccc
Q psy12911        228 GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA--MDMS  305 (356)
Q Consensus       228 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~  305 (356)
                      |.|++|++...  ....++.+-....   .......+..++|+|+|..++..+.|+.|++|+..+++....+..  +...
T Consensus       160 G~v~iw~~~~~--~~~~tl~~v~k~n---~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~  234 (933)
T KOG1274|consen  160 GKVQIWDLQDG--ILSKTLTGVDKDN---EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK  234 (933)
T ss_pred             ceEEEEEcccc--hhhhhcccCCccc---cccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc
Confidence            99999999866  3444443322111   111122678899999998888899999999999999998887753  3445


Q ss_pred             eEEEEECCCCCEEEEEeccC
Q psy12911        306 ISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       306 v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +.++.|||+|+|||+++-++
T Consensus       235 ~~~~~wsPnG~YiAAs~~~g  254 (933)
T KOG1274|consen  235 FSDLQWSPNGKYIAASTLDG  254 (933)
T ss_pred             eEEEEEcCCCcEEeeeccCC
Confidence            99999999999999998654

>KOG1408|consensus

Probab=99.93  E-value=3.8e-24  Score=180.06  Aligned_cols=242  Identities=15%  Similarity=0.165  Sum_probs=194.3

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc---CCCeEEEEcCCCeEEEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID---DGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vw  103 (356)
                      ..+..|.+++.+|+|   ++||+|..-|+++||++..  ......+..|...|.|+.|+.   ..++||+++.|.-|.||
T Consensus       457 d~r~G~R~~~vSp~g---qhLAsGDr~GnlrVy~Lq~--l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~  531 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDG---QHLASGDRGGNLRVYDLQE--LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVY  531 (1080)
T ss_pred             CcccceEEEEECCCc---ceecccCccCceEEEEehh--hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEE
Confidence            456789999999999   9999999999999999987  455567888999999999986   45689999999999999


Q ss_pred             EcCCCcee-e-ecccCCCeeEEEEEeCCCC--CeEEEEECCCeEEEEeCCCCCceEEEe------CCCeeEEE--ecCCC
Q psy12911        104 DLASNQSM-Q-VAQHDAPVKTCHWIKAPNY--TCLMTGSWDKTLKFWDLRTPQPIMTIN------LPERCYCA--DVDYP  171 (356)
Q Consensus       104 d~~~~~~~-~-~~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~--~~~~~  171 (356)
                      |+...-.+ . +.+|...|+++.|.  .+|  ..+++++.|..|.+--.+.......+.      .+...+.+  ++...
T Consensus       532 Dv~rny~l~qtld~HSssITsvKFa--~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k  609 (1080)
T KOG1408|consen  532 DVKRNYDLVQTLDGHSSSITSVKFA--CNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK  609 (1080)
T ss_pred             ecccccchhhhhcccccceeEEEEe--ecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc
Confidence            99765433 2 78899999999998  665  789999999887643322111122222      22334444  45556


Q ss_pred             eEEEEecCCeEEEEeCCCCcccccccc-CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeec
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQEFKKTE-SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHR  250 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  250 (356)
                      ++++++.|..|+||++.++++...... ..+.+..-.+...|.    +.++++.+.|.++.++|+-.+  +++..+.+|.
T Consensus       610 ~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS----giY~atScsdktl~~~Df~sg--EcvA~m~GHs  683 (1080)
T KOG1408|consen  610 LVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS----GIYLATSCSDKTLCFVDFVSG--ECVAQMTGHS  683 (1080)
T ss_pred             eEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC----ccEEEEeecCCceEEEEeccc--hhhhhhcCcc
Confidence            999999999999999999875433322 334466677777888    899999999999999999877  7889999998


Q ss_pred             CCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                      .           .|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus       684 E-----------~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  684 E-----------AVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             h-----------heeeeeecccchhheeecCCceEEEEECch
Confidence            8           899999999999999999999999999863

>KOG1034|consensus

Probab=99.93  E-value=2.1e-24  Score=165.48  Aligned_cols=249  Identities=18%  Similarity=0.249  Sum_probs=187.8

Q ss_pred             CCCCeeEEEecCCCCC-ceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC-CCeEEEEcCCCeEEEEEc
Q psy12911         28 PEDSISCMAFSPSTLP-QYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD-GTKVFMAGCDKTVKCWDL  105 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~  105 (356)
                      |......++|+-+... ..+||+|+.-|.|+|.|+..  ......+.+|...|+.+.|.|+ .++++++|.|..|++|++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~--~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI  165 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS--GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI  165 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch--hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence            6777888888876531 36899999999999999987  5666889999999999999995 468999999999999999


Q ss_pred             CCCceee----ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe-----------------------
Q psy12911        106 ASNQSMQ----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN-----------------------  158 (356)
Q Consensus       106 ~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------------------  158 (356)
                      ++..++.    ..+|.+.|.++.|+  .++.+|++++.|.+|++|++...+....++                       
T Consensus       166 ~~~~Cv~VfGG~egHrdeVLSvD~~--~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~  243 (385)
T KOG1034|consen  166 QTDVCVAVFGGVEGHRDEVLSVDFS--LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD  243 (385)
T ss_pred             cCCeEEEEecccccccCcEEEEEEc--CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence            9999886    45799999999999  999999999999999999998432111110                       


Q ss_pred             -----CC-CeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccC------------cccccceEEEeecCCCCCCCe
Q psy12911        159 -----LP-ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES------------PLKYQNRCIAIFRDKKKQPAG  220 (356)
Q Consensus       159 -----~~-~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~~~~~  220 (356)
                           .| ..+-|+.+.++++++-+.++.|..|....-.........            -....+.-+.|.-+.-  ...
T Consensus       244 fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~--~~~  321 (385)
T KOG1034|consen  244 FSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW--QKM  321 (385)
T ss_pred             ccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH--HHH
Confidence                 00 013345556678999999999999998432221111110            0122344444443311  578


Q ss_pred             EEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        221 YGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       221 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      |+.|...|.+++||++...+....++..+...         ..|...+||.||.+|+..++|++|.-||.-
T Consensus       322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~---------~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSG---------STVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HhhccCCCcEEEEECCCCCCccCceEEecccc---------ceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            99999999999999998876544444443332         179999999999999999999999999853

>KOG1009|consensus

Probab=99.93  E-value=1.9e-23  Score=164.57  Aligned_cols=284  Identities=14%  Similarity=0.185  Sum_probs=199.7

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-------ceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-------KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      ...+|.++.|.++.  .+.||||+.|..|++|.++.+.       ......+..|...|+++.|+|+|..|++|+.+|.|
T Consensus        12 ~~~pv~s~dfq~n~--~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v   89 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNS--LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV   89 (434)
T ss_pred             CCCceEEEEeccCc--ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence            45699999999988  2499999999999999986532       13345677899999999999999999999999999


Q ss_pred             EEEEcC--------C-----Cc-e---eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--
Q psy12911        101 KCWDLA--------S-----NQ-S---MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--  161 (356)
Q Consensus       101 ~vwd~~--------~-----~~-~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--  161 (356)
                      .+|-..        +     .+ .   ..+.+|...|..++|+  +++.++++++.|..+++||+..|+.+..+..|.  
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws--~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y  167 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS--PDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY  167 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc--CCCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence            999766        2     11 1   1256799999999999  999999999999999999999999999988776  


Q ss_pred             -eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccc---------------------cCcccccceEEEeecCCCCCCC
Q psy12911        162 -RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT---------------------ESPLKYQNRCIAIFRDKKKQPA  219 (356)
Q Consensus       162 -~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---------------------~~~~~~~i~~~~~~~~~~~~~~  219 (356)
                       +.+++++.+.++++-+.|...+.+.+..........                     ......-...++|+|+    +.
T Consensus       168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd----G~  243 (434)
T KOG1009|consen  168 VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD----GS  243 (434)
T ss_pred             cceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC----Cc
Confidence             356677777788887777766666654432111100                     0111223456777888    66


Q ss_pred             eEEEeec----CCe-----EEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeC------------------C
Q psy12911        220 GYGLGSV----EGR-----VAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP------------------V  272 (356)
Q Consensus       220 ~~~~~~~----dg~-----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp------------------~  272 (356)
                      ++++...    .+.     .++|+-... .++...+.+...           +...+.|+|                  .
T Consensus       244 llvtPag~~~~g~~~~~n~tYvfsrk~l-~rP~~~lp~~~k-----------~~lavr~~pVy~elrp~~~~~~~~~lpy  311 (434)
T KOG1009|consen  244 LLVTPAGLFKVGGGVFRNTSYVFSRKDL-KRPAARLPSPKK-----------PALAVRFSPVYYELRPLSSEKFLFVLPY  311 (434)
T ss_pred             EEEcccceeeeCCceeeceeEeeccccc-cCceeecCCCCc-----------ceEEEEeeeeEEEecccccccccccccc
Confidence            6665532    222     233322111 122233333222           344444444                  2


Q ss_pred             CCEEEEEcCCCeEEEEEcCcceecCCCC-CCccceEEEEECCCCCEEEEEeccCCcCCCcc
Q psy12911        273 HGTLATVGSEGTFSFWDKDARTKLKPSE-AMDMSISTCALNHNGQIFAYAVSYDWSKGHEH  332 (356)
Q Consensus       273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~  332 (356)
                      +..+|.++. ..|+|||.++-+++.... -|-..|++++|++||.+|+.+|.|+++....+
T Consensus       312 rlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf  371 (434)
T KOG1009|consen  312 RLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF  371 (434)
T ss_pred             ceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence            234555554 579999999887776554 47789999999999999999999997655443

>KOG4283|consensus

Probab=99.92  E-value=9.8e-24  Score=159.72  Aligned_cols=216  Identities=17%  Similarity=0.254  Sum_probs=174.5

Q ss_pred             eccCCcceeEEEEcc-CCCeEEEEcCCCeEEEEEcCCCc------------ee----eecccCCCeeEEEEEeCCCCCeE
Q psy12911         72 MQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDLASNQ------------SM----QVAQHDAPVKTCHWIKAPNYTCL  134 (356)
Q Consensus        72 ~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~------------~~----~~~~~~~~v~~~~~~~~~~~~~l  134 (356)
                      ...|.+.|+++...+ .|+++++|+.||.|.+||++...            ++    ...+|.-.|.++.|-| -|...+
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP-~DtGmF  117 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP-IDTGMF  117 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee-ecCcee
Confidence            345889999999988 78999999999999999997543            11    1345888999999997 455689


Q ss_pred             EEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCC-----CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEE
Q psy12911        135 MTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDY-----PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIA  209 (356)
Q Consensus       135 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  209 (356)
                      .+++.|.++++||..+.+....|+.+..++.-...+     -++++|..+-.|++-|+..+..  ......|...|.++.
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~--sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF--SHTLSGHRDGVLAVE  195 (397)
T ss_pred             ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc--eeeeccccCceEEEE
Confidence            999999999999999999999999888776644433     4788899999999999998753  334457899999999


Q ss_pred             eecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC---CCCcccccceEEEEEeCCCCEEEEEcCCCeEE
Q psy12911        210 IFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG---AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFS  286 (356)
Q Consensus       210 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~  286 (356)
                      |+|..   .-.|++|+.||.+++||++... .+...+..|.....   .....+...|+.++|+.++.++++++.|..++
T Consensus       196 Wsp~~---e~vLatgsaDg~irlWDiRras-gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r  271 (397)
T KOG4283|consen  196 WSPSS---EWVLATGSADGAIRLWDIRRAS-GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR  271 (397)
T ss_pred             eccCc---eeEEEecCCCceEEEEEeeccc-ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence            99985   4578999999999999997653 34556666653222   22445556899999999999999999999999


Q ss_pred             EEEcCcce
Q psy12911        287 FWDKDART  294 (356)
Q Consensus       287 iwd~~~~~  294 (356)
                      +|+..+|+
T Consensus       272 ~wn~~~G~  279 (397)
T KOG4283|consen  272 VWNMESGR  279 (397)
T ss_pred             EeecccCc
Confidence            99998875

>KOG0642|consensus

Probab=99.92  E-value=1.9e-24  Score=176.95  Aligned_cols=262  Identities=19%  Similarity=0.225  Sum_probs=198.0

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccC---C---CceeeeeeccCCcceeEEEEccCCCeEE
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEP---N---GKTIPKSMQGMSEPVLDVAWIDDGTKVF   92 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~---~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~   92 (356)
                      +..-.++..|.+.|+.++|.|..   ..|++++.||.|++|+++.   .   ....+.++.+|.++|.|+++.+++.+++
T Consensus       284 w~ik~tl~s~~d~ir~l~~~~se---p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y  360 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFHPSE---PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY  360 (577)
T ss_pred             cceeeeeecchhhhhhhhcCCCC---CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence            33444788899999999999998   8999999999999999932   1   1355678999999999999999999999


Q ss_pred             EEcCCCeEEEEEcCCCc---------ee--eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe---
Q psy12911         93 MAGCDKTVKCWDLASNQ---------SM--QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN---  158 (356)
Q Consensus        93 ~~~~dg~i~vwd~~~~~---------~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---  158 (356)
                      +|+-||+|+.|++....         .+  .+.+|.+.|+.++++  +....|++++.||++++|+.....+ .++.   
T Consensus       361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s--~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~  437 (577)
T KOG0642|consen  361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS--STKDRLLSCSSDGTVRLWEPTEESP-CTFGEPK  437 (577)
T ss_pred             eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeec--ccccceeeecCCceEEeeccCCcCc-cccCCcc
Confidence            99999999999665221         11  277999999999999  7777899999999999999876665 3333   


Q ss_pred             CCCeeEEEecCCCeEEEEecCCeEEEEeC---CCCcccccccc--C---cccccceEEEeecCCCCCCCeEEEeecCCeE
Q psy12911        159 LPERCYCADVDYPLAVVGTAGRGIVLYQL---EGKPQEFKKTE--S---PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRV  230 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~---~~~~~~~~~~~--~---~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i  230 (356)
                      .+.....++......+....+.....+++   ...........  .   .....+..+..+|.    ..+.+++..|+.|
T Consensus       438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~----~~~~~~~hed~~I  513 (577)
T KOG0642|consen  438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT----ADITFTAHEDRSI  513 (577)
T ss_pred             ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC----CCeeEecccCCce
Confidence            23334455554433322223333333333   32211111111  0   11245677788888    6789999999999


Q ss_pred             EEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCc
Q psy12911        231 AIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMD  303 (356)
Q Consensus       231 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  303 (356)
                      +++|....  +.++....|..           .++++++.|+|.+|++++.||.+++|.+....++.....|.
T Consensus       514 r~~dn~~~--~~l~s~~a~~~-----------svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  514 RFFDNKTG--KILHSMVAHKD-----------SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             eccccccc--ccchheeeccc-----------eecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            99998776  77889999988           89999999999999999999999999998877777666554

>KOG2096|consensus

Probab=99.92  E-value=3e-23  Score=158.74  Aligned_cols=236  Identities=18%  Similarity=0.244  Sum_probs=168.1

Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce-----eeecccCCCeeEEEEEeCCCCCeEE-EEECCCeE
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS-----MQVAQHDAPVKTCHWIKAPNYTCLM-TGSWDKTL  143 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~i  143 (356)
                      ..+++|.+.|++++|+.||++|++++.|++|++|+++.-..     ++..-.-+..+.+.|.  ||-+-++ ++-...++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fa--pDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFA--PDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEEC--CCcceEEEEEccCCEE
Confidence            46789999999999999999999999999999999986432     2222223356788999  7665554 44455679


Q ss_pred             EEEeCCCCCc----eEE-------EeCCC--eeEEEe--cCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEE
Q psy12911        144 KFWDLRTPQP----IMT-------INLPE--RCYCAD--VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCI  208 (356)
Q Consensus       144 ~iwd~~~~~~----~~~-------~~~~~--~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~  208 (356)
                      ++|.+...+.    ...       +....  .++.+.  -.+.++++++.|..|.+|++++..  +..+. .........
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~--L~~id-tnq~~n~~a  234 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQL--LQSID-TNQSSNYDA  234 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCce--eeeec-cccccccce
Confidence            9998654321    111       11111  123333  334589999999999999999542  11121 223345678


Q ss_pred             EeecCCCCCCCeEEEeecCCeEEEEEeCC---C---CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC
Q psy12911        209 AIFRDKKKQPAGYGLGSVEGRVAIQYVNP---A---NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE  282 (356)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~dg~i~i~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d  282 (356)
                      +.+|+    ++.+++++.--.+++|..-.   +   .....+.+++|..           .|..++||++...+++.+.|
T Consensus       235 avSP~----GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s-----------aV~~~aFsn~S~r~vtvSkD  299 (420)
T KOG2096|consen  235 AVSPD----GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS-----------AVLAAAFSNSSTRAVTVSKD  299 (420)
T ss_pred             eeCCC----CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh-----------heeeeeeCCCcceeEEEecC
Confidence            89999    89999999999999998621   1   2256678999998           99999999999999999999


Q ss_pred             CeEEEEEcCc-------ceecCCC----CCCccceEEEEECCCCCEEEEEeccC
Q psy12911        283 GTFSFWDKDA-------RTKLKPS----EAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       283 g~i~iwd~~~-------~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      |+++|||++-       .+.+++.    ....+.-..++.+|.|+.||.+.+.+
T Consensus       300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~  353 (420)
T KOG2096|consen  300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSD  353 (420)
T ss_pred             CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCc
Confidence            9999999752       1223322    12233344899999999999998766

>KOG0322|consensus

Probab=99.92  E-value=8.4e-24  Score=157.54  Aligned_cols=284  Identities=14%  Similarity=0.163  Sum_probs=197.1

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec-cCCcceeEEEEccCCCeEEEEcC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-GMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      |..++.++++|.+.|+|+.|..++    +|.+|..-|.|.+|++.+.  .....+. .|...|+.+.--|+ ..+.+-+.
T Consensus         3 pPdP~fvLRp~~~~v~s~~fqa~~----rL~sg~~~G~V~~w~lqt~--r~~~~~r~~g~~~it~lq~~p~-d~l~tqgR   75 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQANE----RLMSGLSVGIVKMWVLQTE--RDLPLIRLFGRLFITNLQSIPN-DSLDTQGR   75 (323)
T ss_pred             CCCCeeEeccccchheehhhccch----hhhcccccceEEEEEeecC--ccchhhhhhccceeeceeecCC-cchhhcCC
Confidence            445677788999999999999886    6999999999999999983  3333444 57889999999987 47888899


Q ss_pred             CCeEEEEEcCCCceeeecccCCCeeEEEEEe---CCCC----CeEEEEECCC-eEEEEeCCCCCceEEEeC-----CCee
Q psy12911         97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIK---APNY----TCLMTGSWDK-TLKFWDLRTPQPIMTINL-----PERC  163 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~---~~~~----~~l~~~~~dg-~i~iwd~~~~~~~~~~~~-----~~~~  163 (356)
                      |+.+.+|++..+..+..  |.-.++++.|.+   .+.+    ..++.-++.. .+.+-|......++....     ...+
T Consensus        76 d~~L~lw~ia~s~~i~i--~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv  153 (323)
T KOG0322|consen   76 DPLLILWTIAYSAFISI--HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV  153 (323)
T ss_pred             CceEEEEEccCcceEEE--eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence            99999999987655432  334444444431   0111    1111111110 012222211111111111     1235


Q ss_pred             EEEecCC-----CeEEEEecCCeEEEEeCCCCccccc--------cccCcccccceEEEeecCCCCCCCeEEEeecCCeE
Q psy12911        164 YCADVDY-----PLAVVGTAGRGIVLYQLEGKPQEFK--------KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRV  230 (356)
Q Consensus       164 ~~~~~~~-----~~~~~~~~d~~i~i~d~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i  230 (356)
                      ++.....     .++++|..+|.+.+||+.++.....        .....|..++.++.+.+.    -..=++|+.+..+
T Consensus       154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~----~~rGisgga~dkl  229 (323)
T KOG0322|consen  154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS----CDRGISGGADDKL  229 (323)
T ss_pred             eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh----hcCCcCCCccccc
Confidence            5555332     2678888999999999998632211        122346788899998876    4456778888889


Q ss_pred             EEEEeCCCCCCCc--ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEE
Q psy12911        231 AIQYVNPANPKDN--FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSIST  308 (356)
Q Consensus       231 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  308 (356)
                      ..|.++-......  .+......           .|..+.+-||++.+|+++.|++||||..++.+++..++.|.+.|++
T Consensus       230 ~~~Sl~~s~gslq~~~e~~lknp-----------Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~  298 (323)
T KOG0322|consen  230 VMYSLNHSTGSLQIRKEITLKNP-----------GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNA  298 (323)
T ss_pred             eeeeeccccCcccccceEEecCC-----------CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeE
Confidence            9998865533221  11111111           5889999999999999999999999999999999999999999999


Q ss_pred             EEECCCCCEEEEEeccC
Q psy12911        309 CALNHNGQIFAYAVSYD  325 (356)
Q Consensus       309 ~~~s~~~~~l~~~s~~d  325 (356)
                      ++|+||...+|.||.|.
T Consensus       299 vAfspd~~lmAaaskD~  315 (323)
T KOG0322|consen  299 VAFSPDCELMAAASKDA  315 (323)
T ss_pred             EEeCCCCchhhhccCCc
Confidence            99999999999999776

>KOG2919|consensus

Probab=99.92  E-value=7e-23  Score=156.99  Aligned_cols=274  Identities=15%  Similarity=0.237  Sum_probs=204.0

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc------ee----eeeec-cCCcceeEEEEc-------cCCCeE
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK------TI----PKSMQ-GMSEPVLDVAWI-------DDGTKV   91 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~------~~----~~~~~-~~~~~v~~~~~s-------~~~~~l   91 (356)
                      .-...+.|+|||   ..|++-+.|..+.+|++.....      ..    ...++ .....|...+|-       |+..++
T Consensus        50 nf~kgckWSPDG---SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~  126 (406)
T KOG2919|consen   50 NFLKGCKWSPDG---SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF  126 (406)
T ss_pred             hhhccceeCCCC---ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence            345678899999   9999999999999999865211      00    00111 134567788874       577889


Q ss_pred             EEEcCCCeEEEEEcCCCceee---ecccCC---CeeEEEEEeCCCCCeEEEEECCCeEEEEeC-CCCCceE---EEeC--
Q psy12911         92 FMAGCDKTVKCWDLASNQSMQ---VAQHDA---PVKTCHWIKAPNYTCLMTGSWDKTLKFWDL-RTPQPIM---TINL--  159 (356)
Q Consensus        92 ~~~~~dg~i~vwd~~~~~~~~---~~~~~~---~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~---~~~~--  159 (356)
                      ++.+.+.-|++||.-+|+...   ...|..   ...+++|+  |||..|++|. .++|++||+ +.|+.-.   ++..  
T Consensus       127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs--~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k  203 (406)
T KOG2919|consen  127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS--PDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGK  203 (406)
T ss_pred             eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec--CCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccc
Confidence            999999999999999998765   233443   35689999  9999998765 689999999 5554221   1111  


Q ss_pred             ---CC--eeEEEecCCC-eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee-cCCeEEE
Q psy12911        160 ---PE--RCYCADVDYP-LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAI  232 (356)
Q Consensus       160 ---~~--~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i  232 (356)
                         ..  .++++++... .+++++...++-||.-..+....  ....+.+.|+.+.|.++    ++.|.+|+ .+..|..
T Consensus       204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~--llggh~gGvThL~~~ed----Gn~lfsGaRk~dkIl~  277 (406)
T KOG2919|consen  204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ--LLGGHGGGVTHLQWCED----GNKLFSGARKDDKILC  277 (406)
T ss_pred             ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee--eecccCCCeeeEEeccC----cCeecccccCCCeEEE
Confidence               11  2334444444 88999999999888877654332  23378899999999999    67788777 4788999


Q ss_pred             EEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc-ceecCCCCCCccceEEEEE
Q psy12911        233 QYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA-RTKLKPSEAMDMSISTCAL  311 (356)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~  311 (356)
                      ||++... .++..+..|.....        .-.-....|++++|++|+.||.|++||+++ ++.+..+..|...++.+++
T Consensus       278 WDiR~~~-~pv~~L~rhv~~TN--------QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl  348 (406)
T KOG2919|consen  278 WDIRYSR-DPVYALERHVGDTN--------QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL  348 (406)
T ss_pred             Eeehhcc-chhhhhhhhccCcc--------ceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence            9998654 67777877765211        222455678999999999999999999998 7778888899999999999


Q ss_pred             CCCCCEEEEEecc
Q psy12911        312 NHNGQIFAYAVSY  324 (356)
Q Consensus       312 s~~~~~l~~~s~~  324 (356)
                      +|-=.++|++++.
T Consensus       349 nP~mpilatssGq  361 (406)
T KOG2919|consen  349 NPIMPILATSSGQ  361 (406)
T ss_pred             CcccceeeeccCc
Confidence            9999999998874

>KOG4328|consensus

Probab=99.92  E-value=1.9e-23  Score=166.91  Aligned_cols=250  Identities=14%  Similarity=0.194  Sum_probs=185.7

Q ss_pred             eeeccCCcceeEEEEccCC--CeEEEEcCCCeEEEEEcCCCc-----eeeecccCCCeeEEEEEeCCCCCeEEEEECCCe
Q psy12911         70 KSMQGMSEPVLDVAWIDDG--TKVFMAGCDKTVKCWDLASNQ-----SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKT  142 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~  142 (356)
                      .....+..+|++++|+|..  +.+|+|..-|+|-+||+.+.+     ...+..|..+|.++.|+| .+-..+++.+.||+
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P-~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSP-ANTSQIYSSSYDGT  258 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecC-CChhheeeeccCce
Confidence            4556688999999999944  578888889999999996333     233678999999999997 45567889999999


Q ss_pred             EEEEeCCCCCc--eEEEeCCCee---EEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCC
Q psy12911        143 LKFWDLRTPQP--IMTINLPERC---YCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQ  217 (356)
Q Consensus       143 i~iwd~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  217 (356)
                      |++-|++....  +.+.+.....   +.+......++.+..=|.+.+||++.+........ .|...|..++++|..   
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~---  334 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVC---  334 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceeecCCCC---
Confidence            99999988743  3333212211   12223345677777777999999998866544443 355699999999986   


Q ss_pred             CCeEEEeecCCeEEEEEeCCCCCCCc--ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC----
Q psy12911        218 PAGYGLGSVEGRVAIQYVNPANPKDN--FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD----  291 (356)
Q Consensus       218 ~~~~~~~~~dg~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~----  291 (356)
                      +.++++++.|++.+|||++.-..+..  .....|+.           .|.+..|||.+..|++.+.|..|+|||..    
T Consensus       335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr-----------sV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa  403 (498)
T KOG4328|consen  335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR-----------SVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA  403 (498)
T ss_pred             chheeecccCcceeeeehhhhcCCCCcceecccccc-----------eeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence            67899999999999999986655442  44445555           89999999998779999999999999983    


Q ss_pred             cceecCCCCCCc----c--ceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCc
Q psy12911        292 ARTKLKPSEAMD----M--SISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGN  339 (356)
Q Consensus       292 ~~~~~~~~~~~~----~--~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~  339 (356)
                      .-+++.++. |.    .  ..-..+|.|+..++++|-   +.+.+++++++.+.
T Consensus       404 ~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~---~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  404 KDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGR---YPRPIDVFDGNGGQ  453 (498)
T ss_pred             cCCccceee-ccCcccccccchhheeCCCccEEEEec---cCcceeEEcCCCCE
Confidence            223333332 21    1  233568999999999986   56668888888655

>KOG1273|consensus

Probab=99.92  E-value=6e-23  Score=156.85  Aligned_cols=228  Identities=13%  Similarity=0.171  Sum_probs=170.0

Q ss_pred             eeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE
Q psy12911         79 VLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI  157 (356)
Q Consensus        79 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  157 (356)
                      ..|+.|++.|.+||+|+.||.|.|||+.+....+ +.+|..+|.+++|+  ++|+.|++++.|..|.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS--~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWS--RDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEec--CCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            7899999999999999999999999999988776 78899999999999  99999999999999999999999999999


Q ss_pred             eCCCeeEEEecCC---CeEEEEecCCeEEEEeCCCCcccccccc--CcccccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911        158 NLPERCYCADVDY---PLAVVGTAGRGIVLYQLEGKPQEFKKTE--SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI  232 (356)
Q Consensus       158 ~~~~~~~~~~~~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i  232 (356)
                      .....+....+..   +..++.--+..-.+.++...........  ........+..|.+.    |.++++|...|.+.+
T Consensus       104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~----g~yIitGtsKGkllv  179 (405)
T KOG1273|consen  104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR----GKYIITGTSKGKLLV  179 (405)
T ss_pred             EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCC----CCEEEEecCcceEEE
Confidence            9988877666554   2333333333344445443322111111  111222233345555    899999999999999


Q ss_pred             EEeCCCCCCCcceeeeec-CCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc-------e--ecCCCCC-
Q psy12911        233 QYVNPANPKDNFTFKCHR-SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR-------T--KLKPSEA-  301 (356)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~-------~--~~~~~~~-  301 (356)
                      ++..+.  +.+..++... .           .|..+.++..|++|+.-+.|..||.|+++.-       +  +.+.++. 
T Consensus       180 ~~a~t~--e~vas~rits~~-----------~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv  246 (405)
T KOG1273|consen  180 YDAETL--ECVASFRITSVQ-----------AIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV  246 (405)
T ss_pred             Eecchh--eeeeeeeechhe-----------eeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence            998766  5566655544 2           6999999999999999999999999997621       1  1112211 


Q ss_pred             -CccceEEEEECCCCCEEEEEeccC
Q psy12911        302 -MDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       302 -~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                       ....=.+++||.||.|++.++.-.
T Consensus       247 VNk~~Wk~ccfs~dgeYv~a~s~~a  271 (405)
T KOG1273|consen  247 VNKLQWKKCCFSGDGEYVCAGSARA  271 (405)
T ss_pred             HhhhhhhheeecCCccEEEeccccc
Confidence             112235789999999999998543

>KOG1538|consensus

Probab=99.92  E-value=8.6e-23  Score=170.87  Aligned_cols=269  Identities=15%  Similarity=0.191  Sum_probs=208.6

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS  110 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  110 (356)
                      .|..++|-|||   ..|+.+. +..+.+||.+.+  .+..++++|...|++++|+.||+.+++|+.|..|.+|+..-.-.
T Consensus        14 ci~d~afkPDG---sqL~lAA-g~rlliyD~ndG--~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~   87 (1081)
T KOG1538|consen   14 CINDIAFKPDG---TQLILAA-GSRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI   87 (1081)
T ss_pred             chheeEECCCC---ceEEEec-CCEEEEEeCCCc--ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce
Confidence            89999999999   6666655 358999999883  45589999999999999999999999999999999998654333


Q ss_pred             eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEec--CCCeEEEEecCCeEEEEeCC
Q psy12911        111 MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADV--DYPLAVVGTAGRGIVLYQLE  188 (356)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~  188 (356)
                      + ...|...|.|+.|+  |-.+.|++++-. ..-+|.... +.+...+...++.+.++  ++.+++.|-.+|+|.+-+-.
T Consensus        88 L-kYSH~D~IQCMsFN--P~~h~LasCsLs-dFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~  162 (1081)
T KOG1538|consen   88 L-KYSHNDAIQCMSFN--PITHQLASCSLS-DFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN  162 (1081)
T ss_pred             e-eeccCCeeeEeecC--chHHHhhhcchh-hccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence            3 45699999999999  877889998754 466887543 34444455556666555  55699999999999998766


Q ss_pred             CCccccccccCcccccceEEEeecCCC-CCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEE
Q psy12911        189 GKPQEFKKTESPLKYQNRCIAIFRDKK-KQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGI  267 (356)
Q Consensus       189 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  267 (356)
                      ..+............+|.+++|+|... .....+++.....++.+|.++.........+.-              .-.|+
T Consensus       163 gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~F--------------dP~Ci  228 (1081)
T KOG1538|consen  163 GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNF--------------DPCCI  228 (1081)
T ss_pred             CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCC--------------Cchhh
Confidence            554444444445678999999999843 234567778888888888776542211112211              35689


Q ss_pred             EEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        268 VFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       268 ~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      .+.++|.++..|+.|+.+.+|.-+ |-.+.++.....+|+.++..|++++++.|+-|+
T Consensus       229 sYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG  285 (1081)
T KOG1538|consen  229 SYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG  285 (1081)
T ss_pred             eeccCCcEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCCceEEEEEccC
Confidence            999999999999999999999855 777778877888999999999999999999887

>KOG2048|consensus

Probab=99.91  E-value=4.8e-22  Score=166.30  Aligned_cols=238  Identities=16%  Similarity=0.251  Sum_probs=191.6

Q ss_pred             CCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee--ec-ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC
Q psy12911         75 MSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ--VA-QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP  151 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  151 (356)
                      ...+|.+++|+.+.+.||.+-.+|.|-+|++..+=...  +. +..+.|.+++|.   ++..|++.+.+|.|.-||+.+.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEecccC
Confidence            46789999999999999999999999999999864433  33 456789999996   4557888899999999999999


Q ss_pred             CceEEEeCCCe---eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC
Q psy12911        152 QPIMTINLPER---CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG  228 (356)
Q Consensus       152 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg  228 (356)
                      +++..+.....   .+++.+.+..+++|+.||.+..++...+............+.+.+++|.|+    +..++.|+.||
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~----~~~i~~Gs~Dg  176 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT----GTKIAGGSIDG  176 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC----ccEEEecccCc
Confidence            99988886553   455566678999999999888888888877766666666789999999999    78899999999


Q ss_pred             eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEE
Q psy12911        229 RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSIST  308 (356)
Q Consensus       229 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  308 (356)
                      .|++||........+.+......     .-....-|+++.|-.+ ..|++|..-|+|.+||...+.+++.+..|.+.|.+
T Consensus       177 ~Iriwd~~~~~t~~~~~~~~d~l-----~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~  250 (691)
T KOG2048|consen  177 VIRIWDVKSGQTLHIITMQLDRL-----SKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLA  250 (691)
T ss_pred             eEEEEEcCCCceEEEeeeccccc-----ccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeE
Confidence            99999997663211111111110     0001125788888755 57999999999999999999999999999999999


Q ss_pred             EEECCCCCEEEEEeccC
Q psy12911        309 CALNHNGQIFAYAVSYD  325 (356)
Q Consensus       309 ~~~s~~~~~l~~~s~~d  325 (356)
                      ++-.+++.++++++-|.
T Consensus       251 Lav~~~~d~vfsaGvd~  267 (691)
T KOG2048|consen  251 LAVADNEDRVFSAGVDP  267 (691)
T ss_pred             EEEcCCCCeEEEccCCC
Confidence            99999999999998766

>KOG0267|consensus

Probab=99.91  E-value=1e-24  Score=183.38  Aligned_cols=198  Identities=18%  Similarity=0.250  Sum_probs=164.5

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      .+..+.+|..+|.|+.|+++.   .+|++|+.+|+|++||++.  ...++++.+|...+..+.|+|-+.+.+.|+.|+.+
T Consensus        62 ~i~S~~~hespIeSl~f~~~E---~LlaagsasgtiK~wDlee--Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~  136 (825)
T KOG0267|consen   62 AITSLTGHESPIESLTFDTSE---RLLAAGSASGTIKVWDLEE--AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDL  136 (825)
T ss_pred             hhheeeccCCcceeeecCcch---hhhcccccCCceeeeehhh--hhhhhhhhccccCcceeeeccceEEeccccccccc
Confidence            334488999999999999998   9999999999999999997  45668999999999999999999999999999999


Q ss_pred             EEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecC
Q psy12911        101 KCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAG  179 (356)
Q Consensus       101 ~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  179 (356)
                      ++||++...+.. +.+|...|..++|+  |+|++++.+++|..++|||+..|+.+..|+.+                   
T Consensus       137 ~iwD~Rk~Gc~~~~~s~~~vv~~l~ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-------------------  195 (825)
T KOG0267|consen  137 KIWDIRKKGCSHTYKSHTRVVDVLRLS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-------------------  195 (825)
T ss_pred             eehhhhccCceeeecCCcceeEEEeec--CCCceeeccCCcceeeeecccccccccccccc-------------------
Confidence            999999666665 67799999999999  99999999999999999999999998888743                   


Q ss_pred             CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcc
Q psy12911        180 RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQ  259 (356)
Q Consensus       180 ~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (356)
                                            .+.+..+.++|.    ..+++.|+.|+.+++||++..  ..+...+....        
T Consensus       196 ----------------------e~~v~sle~hp~----e~Lla~Gs~d~tv~f~dletf--e~I~s~~~~~~--------  239 (825)
T KOG0267|consen  196 ----------------------EGKVQSLEFHPL----EVLLAPGSSDRTVRFWDLETF--EVISSGKPETD--------  239 (825)
T ss_pred             ----------------------cccccccccCch----hhhhccCCCCceeeeecccee--EEeeccCCccC--------
Confidence                                  344555666666    567788888888888888643  22222222222        


Q ss_pred             cccceEEEEEeCCCCEEEEEcCCC
Q psy12911        260 DIYAVNGIVFHPVHGTLATVGSEG  283 (356)
Q Consensus       260 ~~~~i~~i~~sp~~~~l~s~~~dg  283 (356)
                         .|.+.+|+|++..+++|....
T Consensus       240 ---~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  240 ---GVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ---CceeeeecCCceeeecCchhh
Confidence               799999999999998887653

>KOG1007|consensus

Probab=99.91  E-value=1.3e-22  Score=153.14  Aligned_cols=244  Identities=19%  Similarity=0.212  Sum_probs=189.1

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCC-------CeEEEEeccCCCce-------eeeeec-cCCcceeEEEEccC
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWD-------NNVRCWEVEPNGKT-------IPKSMQ-GMSEPVLDVAWIDD   87 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~d-------g~i~vw~~~~~~~~-------~~~~~~-~~~~~v~~~~~s~~   87 (356)
                      +++..|.+.|..++-+|..  +.+|+++..+       ..+.||.+..+-..       .+..+. .+-+.|.|+.|.|+
T Consensus        57 kvf~h~agEvw~las~P~d--~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn  134 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFD--QRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN  134 (370)
T ss_pred             hhhhcCCcceehhhcCCCC--CceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence            3466788999999999987  4667766442       25789998763221       112232 34568999999999


Q ss_pred             CCeEEEEcCCCeEEEEEcCCCcee-e------ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC
Q psy12911         88 GTKVFMAGCDKTVKCWDLASNQSM-Q------VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP  160 (356)
Q Consensus        88 ~~~l~~~~~dg~i~vwd~~~~~~~-~------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  160 (356)
                      +..+++-. |..|.+|++..+..+ .      ..++....++-+|+|+.+++.+++.+ |++++.||+++.+....++. 
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~d-  211 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIED-  211 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhh-
Confidence            99998876 889999999877652 1      23466778999999888998888765 78999999998766555432 


Q ss_pred             CeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC
Q psy12911        161 ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP  240 (356)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~  240 (356)
                                                             .|...+..+.|+|+.   ...|++++.||.|++||.+... 
T Consensus       212 ---------------------------------------AHgq~vrdlDfNpnk---q~~lvt~gDdgyvriWD~R~tk-  248 (370)
T KOG1007|consen  212 ---------------------------------------AHGQRVRDLDFNPNK---QHILVTCGDDGYVRIWDTRKTK-  248 (370)
T ss_pred             ---------------------------------------hhcceeeeccCCCCc---eEEEEEcCCCccEEEEeccCCC-
Confidence                                                   456667888888884   5689999999999999998654 


Q ss_pred             CCcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcc--------------------------
Q psy12911        241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDAR--------------------------  293 (356)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~--------------------------  293 (356)
                      .+++++.+|..           +|+++.|+|.. ++|++|+.|..|.+|...+-                          
T Consensus       249 ~pv~el~~HsH-----------WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kp  317 (370)
T KOG1007|consen  249 FPVQELPGHSH-----------WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKP  317 (370)
T ss_pred             ccccccCCCce-----------EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccc
Confidence            67888998887           99999999965 78889999999999965320                          


Q ss_pred             ---eecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        294 ---TKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       294 ---~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                         ..+.++..|+..|.+++||.-..+++.+-++|
T Consensus       318 L~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD  352 (370)
T KOG1007|consen  318 LQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD  352 (370)
T ss_pred             ccccccccccccccceEEEeeccCCCeeEEEeccC
Confidence               12446778999999999999999988887776

>KOG4227|consensus

Probab=99.91  E-value=4.8e-22  Score=156.47  Aligned_cols=293  Identities=16%  Similarity=0.151  Sum_probs=208.4

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-----ceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-----KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      +.+|.+.|+++.|+.++   ++|++|+.|..++||+++..-     +.+...-..|...|.|++|....++|++|..+++
T Consensus        52 ~~~H~GCiNAlqFS~N~---~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   52 VREHTGCINALQFSHND---RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhccccceeeeccCC---eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            56899999999999999   999999999999999986410     1111112346689999999999999999999999


Q ss_pred             EEEEEcCCCceeeecccCC---CeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC-ce---EEEeCCCeeEEEecC--C
Q psy12911        100 VKCWDLASNQSMQVAQHDA---PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ-PI---MTINLPERCYCADVD--Y  170 (356)
Q Consensus       100 i~vwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~---~~~~~~~~~~~~~~~--~  170 (356)
                      |.+-|+++.+.+....|..   .|+.+..+  |..+.|++.+.++.|.+||++..+ .+   .--+.+.......+.  .
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~--P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQH--PTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccC--CCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            9999999999888776655   89999999  667899999999999999998765 22   222223333333332  2


Q ss_pred             -CeEEEEecCCeEEEEeCCCCccccccccCc--c---cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911        171 -PLAVVGTAGRGIVLYQLEGKPQEFKKTESP--L---KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF  244 (356)
Q Consensus       171 -~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~---~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  244 (356)
                       .+|++.+..+.+.+||.+.....+......  .   ...-..+.|+|+    +..+++--....-.+||+-..   ...
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~----G~Q~msiRR~~~P~~~D~~S~---R~~  279 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS----GNQFMSIRRGKCPLYFDFISQ---RCF  279 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC----CCeehhhhccCCCEEeeeecc---cce
Confidence             478889999999999999876544332211  1   122367888998    667776666666667777542   223


Q ss_pred             eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc-----------------------eecCCCCC
Q psy12911        245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR-----------------------TKLKPSEA  301 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~-----------------------~~~~~~~~  301 (356)
                      .++....   ..+.-+...+.+++|-.|. -+++|+.+-.|++|.+...                       +.+..+++
T Consensus       280 V~k~D~N---~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG  355 (609)
T KOG4227|consen  280 VLKSDHN---PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG  355 (609)
T ss_pred             eEeccCC---CCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence            3332211   1122233367888887654 4999999999999987521                       12345789


Q ss_pred             CccceEEEEECCCCCEEEEEeccCCcCCCccCCCC
Q psy12911        302 MDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPN  336 (356)
Q Consensus       302 ~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~  336 (356)
                      |..-++.|.|+|...+|++++   -.+.+.+|.+-
T Consensus       356 HRSv~NQVRF~~H~~~l~SSG---VE~~~KlWS~~  387 (609)
T KOG4227|consen  356 HRSVPNQVRFSQHNNLLVSSG---VENSFKLWSDH  387 (609)
T ss_pred             ccccccceeecCCcceEeccc---hhhheeccccc
Confidence            999999999999998888776   34444444443

>KOG0646|consensus

Probab=99.91  E-value=1.9e-22  Score=161.64  Aligned_cols=238  Identities=13%  Similarity=0.104  Sum_probs=178.6

Q ss_pred             eEEEEEeC-CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeE
Q psy12911         45 YFLIAGSW-DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKT  122 (356)
Q Consensus        45 ~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~  122 (356)
                      .+++++.. -..|.+|.+...  ........-.++|.+++-+|+|.+|+.|+..|.|++|.+.+|.++. +.+|-..|++
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~--~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITc  128 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKK--DQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITC  128 (476)
T ss_pred             hheeeecccCccccccccCch--hhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeE
Confidence            46666543 447889998762  2222233356889999999999999999899999999999999987 7889999999


Q ss_pred             EEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCccc
Q psy12911        123 CHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLK  202 (356)
Q Consensus       123 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  202 (356)
                      +.|+  .|+.+|++|+.||.|.+|++..-                      +.+..++          ..........|.
T Consensus       129 L~fs--~dgs~iiTgskDg~V~vW~l~~l----------------------v~a~~~~----------~~~p~~~f~~Ht  174 (476)
T KOG0646|consen  129 LKFS--DDGSHIITGSKDGAVLVWLLTDL----------------------VSADNDH----------SVKPLHIFSDHT  174 (476)
T ss_pred             EEEe--CCCcEEEecCCCccEEEEEEEee----------------------cccccCC----------CccceeeeccCc
Confidence            9999  99999999999999999986421                      1111111          001111122456


Q ss_pred             ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC
Q psy12911        203 YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE  282 (356)
Q Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d  282 (356)
                      -+|+.+.+.+.+.  ..++++++.|.++++||+..+  ..+.++.-..            ++.+++.+|-++.++.|+.+
T Consensus       175 lsITDl~ig~Gg~--~~rl~TaS~D~t~k~wdlS~g--~LLlti~fp~------------si~av~lDpae~~~yiGt~~  238 (476)
T KOG0646|consen  175 LSITDLQIGSGGT--NARLYTASEDRTIKLWDLSLG--VLLLTITFPS------------SIKAVALDPAERVVYIGTEE  238 (476)
T ss_pred             ceeEEEEecCCCc--cceEEEecCCceEEEEEeccc--eeeEEEecCC------------cceeEEEcccccEEEecCCc
Confidence            6777777766532  578999999999999999877  4455544433            79999999999999999999


Q ss_pred             CeEEEEEcCcc----------------eecCCCCCCcc--ceEEEEECCCCCEEEEEeccCCcCCCccCCCCC
Q psy12911        283 GTFSFWDKDAR----------------TKLKPSEAMDM--SISTCALNHNGQIFAYAVSYDWSKGHEHNNPNK  337 (356)
Q Consensus       283 g~i~iwd~~~~----------------~~~~~~~~~~~--~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~  337 (356)
                      |.|.+.++...                ..+..+.+|.+  .|+|++.+-||..|++|+.|+   .+.+|++..
T Consensus       239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg---~VcvWdi~S  308 (476)
T KOG0646|consen  239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG---KVCVWDIYS  308 (476)
T ss_pred             ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC---CEEEEecch
Confidence            99999886532                23456778888  999999999999999998765   233444443

>KOG1063|consensus

Probab=99.91  E-value=1.9e-21  Score=163.21  Aligned_cols=306  Identities=11%  Similarity=0.082  Sum_probs=209.8

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      +........+.||.++|+|+.|-|+.....++++|+.|+.|++|.++......+..+++|...+.|+.=  ......+..
T Consensus        41 p~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a--~~~~~~~~~  118 (764)
T KOG1063|consen   41 PEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVA--RSSVMTCKA  118 (764)
T ss_pred             cccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEe--eeeEEEeec
Confidence            333355677899999999999999872222899999999999999996556666778877766665542  222233336


Q ss_pred             CCCeEEEEEcCCCcee-----eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC--CceEEEeCCCe-e--EE
Q psy12911         96 CDKTVKCWDLASNQSM-----QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP--QPIMTINLPER-C--YC  165 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-~--~~  165 (356)
                      .|+.+.+||.+..+..     ++....--..|+++.+.++.-+++.|+.+..|.++.-.+.  +.+..+.+|.. +  +.
T Consensus       119 ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~  198 (764)
T KOG1063|consen  119 ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLA  198 (764)
T ss_pred             cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhh
Confidence            7999999999666622     1222222335556663233334566667777888765543  45566677663 2  22


Q ss_pred             EecC-C--CeEEEEecCCeEEEEeCCCCccc-----------------------------cccccCcccccceEEEeecC
Q psy12911        166 ADVD-Y--PLAVVGTAGRGIVLYQLEGKPQE-----------------------------FKKTESPLKYQNRCIAIFRD  213 (356)
Q Consensus       166 ~~~~-~--~~~~~~~~d~~i~i~d~~~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~  213 (356)
                      +... +  -++++++.|..|+||.+.-....                             .......|..-|.++.|+|.
T Consensus       199 f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~  278 (764)
T KOG1063|consen  199 FARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPE  278 (764)
T ss_pred             hhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccc
Confidence            2222 2  27888999999999988543200                             00122357788999999999


Q ss_pred             CCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc-
Q psy12911        214 KKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA-  292 (356)
Q Consensus       214 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~-  292 (356)
                          +..|++++.|.++.+|.-+..++.-+.........      +.........|+|++..+++-+.-|..++|..+. 
T Consensus       279 ----~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g------g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~  348 (764)
T KOG1063|consen  279 ----GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG------GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK  348 (764)
T ss_pred             ----hhhheecccCcceEEEecCCccceEEEEEEeeccc------ccccceeeEEEcCCCCEEEEecccCcEEEEeccCc
Confidence                77899999999999998876644333333222110      1111588999999999999999999999998332 


Q ss_pred             --ceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccC
Q psy12911        293 --RTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHN  333 (356)
Q Consensus       293 --~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~  333 (356)
                        ......+.+|.+.|++++|+|.|++|.++|-|.-.+.+..|
T Consensus       349 ~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w  391 (764)
T KOG1063|consen  349 TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW  391 (764)
T ss_pred             cceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence              24456678999999999999999999999988755444444

>KOG0303|consensus

Probab=99.90  E-value=2.3e-22  Score=158.03  Aligned_cols=213  Identities=17%  Similarity=0.183  Sum_probs=164.9

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc-----eeeeeeccCCcceeEEEEcc-CCCeEEE
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK-----TIPKSMQGMSEPVLDVAWID-DGTKVFM   93 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~s~-~~~~l~~   93 (356)
                      +......||+++|..++|+|.+  ...||+||.|.+|.||++..++.     ..+..+.+|...|--++|+| ..+.|++
T Consensus        72 ~~~P~v~GHt~~vLDi~w~Pfn--D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLls  149 (472)
T KOG0303|consen   72 ASYPLVCGHTAPVLDIDWCPFN--DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLS  149 (472)
T ss_pred             CCCCCccCccccccccccCccC--CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhh
Confidence            4455678999999999999987  58999999999999999987552     34567889999999999999 4468899


Q ss_pred             EcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe----eEEEecC
Q psy12911         94 AGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER----CYCADVD  169 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~  169 (356)
                      ++.|.+|.+|++.+++.+....|...|+++.|+  .+|.+|++.+.|..|||||.++++.+..-..|..    -..+-.+
T Consensus       150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~  227 (472)
T KOG0303|consen  150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS  227 (472)
T ss_pred             ccCCceEEEEeccCCceeeecCCCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc
Confidence            999999999999999987766699999999999  9999999999999999999999999887765542    1222333


Q ss_pred             CCeEEEE---ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC
Q psy12911        170 YPLAVVG---TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN  239 (356)
Q Consensus       170 ~~~~~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~  239 (356)
                      +..+.+|   ..+.++.+||..+-..+...........|.---+.++.   .-..++|-.|+.|+-|.+....
T Consensus       228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt---~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT---SIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             CceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC---CEEEEEecCCcceEEEEecCCC
Confidence            4433333   24789999998876554333332333444444455552   3345667789999999997654

>KOG1034|consensus

Probab=99.90  E-value=1e-21  Score=150.88  Aligned_cols=294  Identities=16%  Similarity=0.183  Sum_probs=202.1

Q ss_pred             EEeCCCCCCeeEEEecCCC--CCceEEEEEeCCCeEEEEeccCCCc-eeeeeec--cCCcceeEEEEccC----CCeEEE
Q psy12911         23 EVVSPPEDSISCMAFSPST--LPQYFLIAGSWDNNVRCWEVEPNGK-TIPKSMQ--GMSEPVLDVAWIDD----GTKVFM   93 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~--~~~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~--~~~~~v~~~~~s~~----~~~l~~   93 (356)
                      ++...|..+|..++|++-.  ..+..+|+.+. ..+.+|.....+. .+.+...  .|......++|+-+    ..++|+
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            3456799999999998421  11356666664 5899999876441 2222222  37778888999763    347889


Q ss_pred             EcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----eeEEEec
Q psy12911         94 AGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----RCYCADV  168 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~  168 (356)
                      ++.-|.|+|.|+.++++.. +.+|...|+.+.++| .+.+++++++.|..||+|++++..++..+.+-.    .++++++
T Consensus       111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             ecceeEEEEEecchhhhccceeccCccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence            9999999999999999887 899999999999995 456799999999999999999999998887432    4666555


Q ss_pred             --CCCeEEEEecCCeEEEEeCCCCcccccc--------------------------ccCcccccceEEEeecCCCCCCCe
Q psy12911        169 --DYPLAVVGTAGRGIVLYQLEGKPQEFKK--------------------------TESPLKYQNRCIAIFRDKKKQPAG  220 (356)
Q Consensus       169 --~~~~~~~~~~d~~i~i~d~~~~~~~~~~--------------------------~~~~~~~~i~~~~~~~~~~~~~~~  220 (356)
                        ++.++++++-|.+|++|++...+.....                          ....|...|.|+.|.      +++
T Consensus       190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~------gd~  263 (385)
T KOG1034|consen  190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF------GDF  263 (385)
T ss_pred             cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH------hhh
Confidence              4579999999999999999843210000                          111244555666665      448


Q ss_pred             EEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC-CCCc-ccccceEEEE--EeCCCCEEEEEcCCCeEEEEEcCcceec
Q psy12911        221 YGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG-AGGV-QDIYAVNGIV--FHPVHGTLATVGSEGTFSFWDKDARTKL  296 (356)
Q Consensus       221 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~i~--~sp~~~~l~s~~~dg~i~iwd~~~~~~~  296 (356)
                      +++-+.++.|..|....-. +.+...+....... .... -....|+-+.  |.|-+++||.|...|.|.+||++..++.
T Consensus       264 ilSkscenaI~~w~pgkl~-e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~  342 (385)
T KOG1034|consen  264 ILSKSCENAIVCWKPGKLE-ESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP  342 (385)
T ss_pred             eeecccCceEEEEecchhh-hhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence            8898999999999762110 11111100000000 0000 0001345454  5556799999999999999999877653


Q ss_pred             C--CCC--CCccceEEEEECCCCCEEEEEeccC
Q psy12911        297 K--PSE--AMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       297 ~--~~~--~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      .  ++.  .....|+..+||.||.+|+...+|.
T Consensus       343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~  375 (385)
T KOG1034|consen  343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG  375 (385)
T ss_pred             cCceEEeccccceeeeeeecccCcEEEEEeCCC
Confidence            2  221  1245799999999999999998765

>KOG0302|consensus

Probab=99.89  E-value=7.7e-22  Score=154.22  Aligned_cols=208  Identities=17%  Similarity=0.292  Sum_probs=161.2

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCcee-eeeeccCCcceeEEEEccC-CCeEEE
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTI-PKSMQGMSEPVLDVAWIDD-GTKVFM   93 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~v~~~~~s~~-~~~l~~   93 (356)
                      ...++++.++.+|.+.=+.++|||-.  ...|++|..-+.|++|...++.... ...+.+|+..|-.++|||. ...|++
T Consensus       198 ~s~~~Pl~t~~ghk~EGy~LdWSp~~--~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaS  275 (440)
T KOG0302|consen  198 DSEFRPLFTFNGHKGEGYGLDWSPIK--TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFAS  275 (440)
T ss_pred             ccccCceEEecccCccceeeeccccc--ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEe
Confidence            36678899999999999999999954  2468999888999999998854322 2456789999999999994 458899


Q ss_pred             EcCCCeEEEEEcCCC---ceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC---CCceEEEeCCC-eeEEE
Q psy12911         94 AGCDKTVKCWDLASN---QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT---PQPIMTINLPE-RCYCA  166 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~-~~~~~  166 (356)
                      ||.||+|+|||++.+   .++....|.+.|+.|.|+  .+-.+|++|+.||+++|||+++   ++++..++.|. .+.++
T Consensus       276 cS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWn--r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsi  353 (440)
T KOG0302|consen  276 CSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWN--RREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSI  353 (440)
T ss_pred             eecCceEEEEEecCCCccceeEeeccCCceeeEEcc--CCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEE
Confidence            999999999999988   445578899999999999  7777999999999999999987   46788888776 46666


Q ss_pred             ecCC---CeEEEEecCCeEEEEeCCCCcccc----------------ccccCcccccceEEEeecCCCCCCCeEEEeecC
Q psy12911        167 DVDY---PLAVVGTAGRGIVLYQLEGKPQEF----------------KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE  227 (356)
Q Consensus       167 ~~~~---~~~~~~~~d~~i~i~d~~~~~~~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d  227 (356)
                      .+..   ..+++++.|.+|.+||+.-....-                ..+...-...+..+.|++..   +.++++.+.|
T Consensus       354 eW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Qi---PG~lvsTa~d  430 (440)
T KOG0302|consen  354 EWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQI---PGLLVSTAID  430 (440)
T ss_pred             EeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCC---CCeEEEeccc
Confidence            6663   589999999999999996532200                00001122346677777763   5677777777


Q ss_pred             CeE
Q psy12911        228 GRV  230 (356)
Q Consensus       228 g~i  230 (356)
                      |.-
T Consensus       431 Gfn  433 (440)
T KOG0302|consen  431 GFN  433 (440)
T ss_pred             cee
Confidence            753

>KOG1334|consensus

Probab=99.89  E-value=1.6e-22  Score=163.08  Aligned_cols=308  Identities=14%  Similarity=0.139  Sum_probs=232.7

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc--CCCeEEEEcCC
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID--DGTKVFMAGCD   97 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d   97 (356)
                      .....|.+|.+.|+.+.|+..|   ..|++|+.|..|.+||.... ........+|...|....|-|  +.+.+++++.|
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~G---d~l~SgSDD~~vv~WdW~~~-~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d  208 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRG---DVLASGSDDLQVVVWDWVSG-SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD  208 (559)
T ss_pred             hhhhcccCCCCccceeeecccC---ceeeccCccceEEeehhhcc-CcccccccccccchhhhhccCCCCCcCceecccc
Confidence            3445688999999999999999   99999999999999999883 444456678999999999988  44689999999


Q ss_pred             CeEEEEEcCCCce----eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe---CCCe------eE
Q psy12911         98 KTVKCWDLASNQS----MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN---LPER------CY  164 (356)
Q Consensus        98 g~i~vwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~------~~  164 (356)
                      |+|++=.+.....    .++..|.++|.-++.-| .....|.++++|+.+.-+|++++.+...+.   .+..      .+
T Consensus       209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p-~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I  287 (559)
T KOG1334|consen  209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEP-DSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI  287 (559)
T ss_pred             CceeeeeeccccceecceecccccCccceeeecC-CCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence            9999987654332    23677999999999984 344568999999999999999876543332   1111      23


Q ss_pred             EEecCC-CeEEEEecCCeEEEEeCCCCccc-----cccc-----cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEE
Q psy12911        165 CADVDY-PLAVVGTAGRGIVLYQLEGKPQE-----FKKT-----ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQ  233 (356)
Q Consensus       165 ~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~-----~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~  233 (356)
                      ++.+.. ..+++++.|...++||.+.-...     +...     .......|++++++.+    +.-++++..|-.|+++
T Consensus       288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~----~sElLaSYnDe~IYLF  363 (559)
T KOG1334|consen  288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD----GSELLASYNDEDIYLF  363 (559)
T ss_pred             ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC----ccceeeeecccceEEe
Confidence            344444 38899999999999999764322     1111     1133467899999988    6678888889899998


Q ss_pred             EeCCCCC----------CC-cceeeeecCCCCCCCcccccceEEEEE-eCCCCEEEEEcCCCeEEEEEcCcceecCCCCC
Q psy12911        234 YVNPANP----------KD-NFTFKCHRSNGGAGGVQDIYAVNGIVF-HPVHGTLATVGSEGTFSFWDKDARTKLKPSEA  301 (356)
Q Consensus       234 ~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~i~~i~~-sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  301 (356)
                      .-+.+.+          .. ...+++|+...         .|..+-| -|...|+++|+.-|.|.||+-++++.+..+++
T Consensus       364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~---------TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg  434 (559)
T KOG1334|consen  364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSR---------TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG  434 (559)
T ss_pred             ccccccCCCCCCCcchhhccchhhccccccc---------ccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence            5443322          11 12366776533         5666664 57779999999999999999999999999998


Q ss_pred             CccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCceeeeccccc
Q psy12911        302 MDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFE  348 (356)
Q Consensus       302 ~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~  348 (356)
                      ...-|+||.=+|--..||+++   .+..+.+|.|...+.++....-+
T Consensus       435 Dr~VVNCLEpHP~~PvLAsSG---id~DVKIWTP~~~er~~~~~~lk  478 (559)
T KOG1334|consen  435 DRHVVNCLEPHPHLPVLASSG---IDHDVKIWTPLTAERATEPTLLK  478 (559)
T ss_pred             ccceEeccCCCCCCchhhccC---CccceeeecCCccccccChhhHH
Confidence            777999999999999999887   45678888887666665554443

>KOG0307|consensus

Probab=99.89  E-value=8e-23  Score=180.57  Aligned_cols=248  Identities=14%  Similarity=0.173  Sum_probs=196.2

Q ss_pred             CCCeeEEEecCCCCCc-eEEEEEeCCCeEEEEeccC----CCceeeeeeccCCcceeEEEEccCCC-eEEEEcCCCeEEE
Q psy12911         29 EDSISCMAFSPSTLPQ-YFLIAGSWDNNVRCWEVEP----NGKTIPKSMQGMSEPVLDVAWIDDGT-KVFMAGCDKTVKC  102 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~v  102 (356)
                      ....+.++|.+.+... .+||.|..||.|.+||...    .....+.+...|.+.|..+.|++... .||+|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            4577899999988110 1488899999999999765    22455567788999999999999554 9999999999999


Q ss_pred             EEcCCCceeee---cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-----eEEEecCCC-eE
Q psy12911        103 WDLASNQSMQV---AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-----CYCADVDYP-LA  173 (356)
Q Consensus       103 wd~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~-~~  173 (356)
                      ||+..-+.-..   ....+.|.+++|+. ...+.|++++.+|.+.|||++..+.+..+..+..     .+.++++.. .+
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNr-kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql  222 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNR-KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL  222 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccch-hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence            99987543322   23567899999983 4567889999999999999999988888776654     344444442 66


Q ss_pred             EEEecC---CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeec
Q psy12911        174 VVGTAG---RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHR  250 (356)
Q Consensus       174 ~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  250 (356)
                      ++++.|   -.|.+||+|.-..+.+.. ..|...|.++.|++..   ..++++++.|+.+.+|+.+++  +.+..+....
T Consensus       223 ~~As~dd~~PviqlWDlR~assP~k~~-~~H~~GilslsWc~~D---~~lllSsgkD~~ii~wN~~tg--Evl~~~p~~~  296 (1049)
T KOG0307|consen  223 LVASGDDSAPVIQLWDLRFASSPLKIL-EGHQRGILSLSWCPQD---PRLLLSSGKDNRIICWNPNTG--EVLGELPAQG  296 (1049)
T ss_pred             eeecCCCCCceeEeecccccCCchhhh-cccccceeeeccCCCC---chhhhcccCCCCeeEecCCCc--eEeeecCCCC
Confidence            666665   579999999877766666 4788899999999973   589999999999999998876  6677776654


Q ss_pred             CCCCCCCcccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcCcce
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKDART  294 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~~~~  294 (356)
                      .           ++..+.|+|... .|++++-||.|.|+.+....
T Consensus       297 n-----------W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  297 N-----------WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             c-----------ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            4           899999999874 88999999999999987553

>KOG0644|consensus

Probab=99.89  E-value=4.3e-23  Score=176.47  Aligned_cols=268  Identities=17%  Similarity=0.217  Sum_probs=200.9

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      .+.++.+.+|.++|+|+.|...|   .++++|+.|..++||..++  ..+.....||.+.|+.++.+.+..++++++.|.
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg---~~Iitgsdd~lvKiwS~et--~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~  254 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTG---RYIITGSDDRLVKIWSMET--ARCLASCRGHSGDITDLAVSSNNTMIAAASNDK  254 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeecccc---ceEeecCccceeeeeeccc--hhhhccCCCCccccchhccchhhhhhhhcccCc
Confidence            34556678999999999999999   9999999999999999877  455588999999999999999999999999999


Q ss_pred             eEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE------eCCCe--eEEEecC
Q psy12911         99 TVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI------NLPER--CYCADVD  169 (356)
Q Consensus        99 ~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~--~~~~~~~  169 (356)
                      .|++|.+..+.++. +.+|++.|++++|+|  -.    +.+.||++++||.+ ...+...      .....  ...+...
T Consensus       255 vIrvWrl~~~~pvsvLrghtgavtaiafsP--~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~  327 (1113)
T KOG0644|consen  255 VIRVWRLPDGAPVSVLRGHTGAVTAIAFSP--RA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENN  327 (1113)
T ss_pred             eEEEEecCCCchHHHHhccccceeeeccCc--cc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccc
Confidence            99999999999988 889999999999994  32    67889999999987 1111111      11111  2223334


Q ss_pred             CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH  249 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  249 (356)
                      +..+++++.++.-..|.+....-        +.....-+..+.+.   ..+.+++-.+-.+.+|++-.+  ...+.+.+|
T Consensus       328 ~~~f~Tgs~d~ea~n~e~~~l~~--------~~~~lif~t~ssd~---~~~~~~ar~~~~~~vwnl~~g--~l~H~l~gh  394 (1113)
T KOG0644|consen  328 GDRFLTGSRDGEARNHEFEQLAW--------RSNLLIFVTRSSDL---SSIVVTARNDHRLCVWNLYTG--QLLHNLMGH  394 (1113)
T ss_pred             ccccccccCCcccccchhhHhhh--------hccceEEEeccccc---cccceeeeeeeEeeeeecccc--hhhhhhccc
Confidence            45778888888877776643210        00001111111111   245566667777888887655  678888888


Q ss_pred             cCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                      ..           .+..+.++|-. +...+++.||...|||+-.|.+++......+.+...+||+||..++...
T Consensus       395 sd-----------~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd  457 (1113)
T KOG0644|consen  395 SD-----------EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSD  457 (1113)
T ss_pred             cc-----------ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCC
Confidence            87           89999999976 5556899999999999998887765543355677889999998887653

>KOG0270|consensus

Probab=99.89  E-value=1e-21  Score=156.55  Aligned_cols=206  Identities=17%  Similarity=0.276  Sum_probs=160.8

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEEEE
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw  103 (356)
                      -.+|++.|.+++|+..-  .+.||+||.|.+|++||+.++  .+..++..|.+.|.++.|+| ....|++|+.|++|.+.
T Consensus       239 ~~gHTdavl~Ls~n~~~--~nVLaSgsaD~TV~lWD~~~g--~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~  314 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNF--RNVLASGSADKTVKLWDVDTG--KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALK  314 (463)
T ss_pred             cccchHHHHHHHhcccc--ceeEEecCCCceEEEEEcCCC--CcceehhhcCCceeEEEecCCCceEEEeccccceEEee
Confidence            45799999999999876  589999999999999999983  44467778999999999999 56789999999999999


Q ss_pred             EcCCCcee-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeCCCe-eEEEecCC---CeEEEEe
Q psy12911        104 DLASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINLPER-CYCADVDY---PLAVVGT  177 (356)
Q Consensus       104 d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~-~~~~~~~~---~~~~~~~  177 (356)
                      |.+..... ..-...+.|-.++|.| .....++++..||+|+-+|+|.. +++.+++.|.. +..++.+.   .++++++
T Consensus       315 D~R~~~~s~~~wk~~g~VEkv~w~~-~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s  393 (463)
T KOG0270|consen  315 DCRDPSNSGKEWKFDGEVEKVAWDP-HSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS  393 (463)
T ss_pred             eccCccccCceEEeccceEEEEecC-CCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc
Confidence            99853322 2445678899999995 34456788889999999999986 89999998774 33444433   4888999


Q ss_pred             cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                      .++.+++|++..............-+...|.++.|+.   ...++.|+..+.++|||+-..
T Consensus       394 ~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~---a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  394 TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDV---AFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             ccceEEEEeecCCCCcccccccccccceeecccCCCc---ceEEEecCccceEEEeecccC
Confidence            9999999999875432222221112335666777763   567889999999999998655

>KOG4378|consensus

Probab=99.88  E-value=3.3e-21  Score=156.00  Aligned_cols=218  Identities=15%  Similarity=0.223  Sum_probs=177.7

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS  110 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  110 (356)
                      .-.|++.....   .++++|+..+.|+|||+..  +.+.+.+++|...|+++.++....+||+++..|.|.|..+.++..
T Consensus        81 ~~~Cv~~~s~S---~y~~sgG~~~~Vkiwdl~~--kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~  155 (673)
T KOG4378|consen   81 NAFCVACASQS---LYEISGGQSGCVKIWDLRA--KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK  155 (673)
T ss_pred             hHHHHhhhhcc---eeeeccCcCceeeehhhHH--HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence            33455555444   7999999999999999986  677788999999999999999999999999999999999999887


Q ss_pred             eeecccC--CCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe----CCCeeEEEecCCC-eEEEEecCCeEE
Q psy12911        111 MQVAQHD--APVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN----LPERCYCADVDYP-LAVVGTAGRGIV  183 (356)
Q Consensus       111 ~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~d~~i~  183 (356)
                      ....+|.  ..|.-+.|+| ....+|.+++.+|.|.+||+....++..+.    .+...+|+++... ++++.+.|..|.
T Consensus       156 tt~f~~~sgqsvRll~ys~-skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~  234 (673)
T KOG4378|consen  156 TTTFTIDSGQSVRLLRYSP-SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKIN  234 (673)
T ss_pred             ccceecCCCCeEEEeeccc-ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEE
Confidence            7655444  4567899994 344567889999999999998877766554    3446788888776 677789999999


Q ss_pred             EEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccc
Q psy12911        184 LYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYA  263 (356)
Q Consensus       184 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      +||++........   ....+...++|.++    |.+|++|...|.|..||++... .++.++..|..           .
T Consensus       235 ~yD~~s~~s~~~l---~y~~Plstvaf~~~----G~~L~aG~s~G~~i~YD~R~~k-~Pv~v~sah~~-----------s  295 (673)
T KOG4378|consen  235 IYDIRSQASTDRL---TYSHPLSTVAFSEC----GTYLCAGNSKGELIAYDMRSTK-APVAVRSAHDA-----------S  295 (673)
T ss_pred             Eeeccccccccee---eecCCcceeeecCC----ceEEEeecCCceEEEEecccCC-CCceEeeeccc-----------c
Confidence            9999976432222   23567899999999    8999999999999999998654 78889999988           8


Q ss_pred             eEEEEEeCCC
Q psy12911        264 VNGIVFHPVH  273 (356)
Q Consensus       264 i~~i~~sp~~  273 (356)
                      |++++|-|..
T Consensus       296 Vt~vafq~s~  305 (673)
T KOG4378|consen  296 VTRVAFQPSP  305 (673)
T ss_pred             eeEEEeeecc
Confidence            9999997753

>KOG0290|consensus

Probab=99.87  E-value=1.1e-19  Score=137.55  Aligned_cols=282  Identities=16%  Similarity=0.251  Sum_probs=203.7

Q ss_pred             eEEeCCCCCCeeEEEecCCCCCceEEEEEeC----CCeEEEEeccCCCcee-eeeeccCCcceeEEEEccCCC-----eE
Q psy12911         22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSW----DNNVRCWEVEPNGKTI-PKSMQGMSEPVLDVAWIDDGT-----KV   91 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~----dg~i~vw~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~-----~l   91 (356)
                      +.....| -.+.++.|+.......+||.|+.    .+.|.|-.+....... ...-..|.-+++.+.|.|+..     +|
T Consensus        38 iy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL  116 (364)
T KOG0290|consen   38 IYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL  116 (364)
T ss_pred             EEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence            4444433 37889999843222468999973    4677777766433322 222246899999999999763     45


Q ss_pred             EEEcCCCeEEEEEcCCCc--ee--------eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc----eEEE
Q psy12911         92 FMAGCDKTVKCWDLASNQ--SM--------QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP----IMTI  157 (356)
Q Consensus        92 ~~~~~dg~i~vwd~~~~~--~~--------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~  157 (356)
                      |+++  ..+++|.+...+  ..        +...+..++++..|+. -+.++|.+++-|-+..|||++++..    .+-+
T Consensus       117 ATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne-~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI  193 (364)
T KOG0290|consen  117 ATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNE-VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI  193 (364)
T ss_pred             hccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccccccc-CCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence            5544  479999987422  11        1234678999999984 6788999999999999999999733    2334


Q ss_pred             eCCCeeEEEecCC---CeEEEEecCCeEEEEeCCCCccccccccCcc-cccceEEEeecCCCCCCCeEEEeecC-CeEEE
Q psy12911        158 NLPERCYCADVDY---PLAVVGTAGRGIVLYQLEGKPQEFKKTESPL-KYQNRCIAIFRDKKKQPAGYGLGSVE-GRVAI  232 (356)
Q Consensus       158 ~~~~~~~~~~~~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~d-g~i~i  232 (356)
                      .+...++.+.+..   +.+++.+.||.+++||++...........+. ..+...++|++..   .+++++-..| ..|.|
T Consensus       194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD---pnymATf~~dS~~V~i  270 (364)
T KOG0290|consen  194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD---PNYMATFAMDSNKVVI  270 (364)
T ss_pred             ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC---chHHhhhhcCCceEEE
Confidence            4455676666654   5889999999999999998765555554444 5667788887763   6777776654 56888


Q ss_pred             EEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCccee------cCCCCCCccc
Q psy12911        233 QYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDARTK------LKPSEAMDMS  305 (356)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~  305 (356)
                      .|++... .++..+.+|..           .|+.++|.|.. ..|+++++|..+.+||+...-.      +.... -.+.
T Consensus       271 LDiR~P~-tpva~L~~H~a-----------~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~E  337 (364)
T KOG0290|consen  271 LDIRVPC-TPVARLRNHQA-----------SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGE  337 (364)
T ss_pred             EEecCCC-cceehhhcCcc-----------cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccce
Confidence            8987654 67888999998           99999999975 7899999999999999875321      22222 4678


Q ss_pred             eEEEEEC-CCCCEEEEEec
Q psy12911        306 ISTCALN-HNGQIFAYAVS  323 (356)
Q Consensus       306 v~~~~~s-~~~~~l~~~s~  323 (356)
                      |+.+.|+ ....+++.+.+
T Consensus       338 VNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  338 VNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             eeeeeecccCCCEEEEEec
Confidence            9999999 46778888864

>KOG1963|consensus

Probab=99.87  E-value=1.1e-19  Score=156.73  Aligned_cols=275  Identities=16%  Similarity=0.224  Sum_probs=199.6

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccC--CCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEP--NGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD  104 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  104 (356)
                      .|.-.++|.+++|++   +++|+|..||.|.+|.--.  +...-...+.=|...|.+++|+++|.+|++|+..|.+.+|.
T Consensus       203 ~Htf~~t~~~~spn~---~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq  279 (792)
T KOG1963|consen  203 HHTFNITCVALSPNE---RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ  279 (792)
T ss_pred             hhcccceeEEecccc---ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence            466779999999999   9999999999999997533  22333466777999999999999999999999999999999


Q ss_pred             cCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC---C-----------CeeEEEecCC
Q psy12911        105 LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL---P-----------ERCYCADVDY  170 (356)
Q Consensus       105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~-----------~~~~~~~~~~  170 (356)
                      +.+++...+..-.++|..+.++  ||+.+.+...+|+.|.+....+.+...++.+   .           ...+++++..
T Consensus       280 ~~T~~kqfLPRLgs~I~~i~vS--~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~  357 (792)
T KOG1963|consen  280 LETGKKQFLPRLGSPILHIVVS--PDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT  357 (792)
T ss_pred             ecCCCcccccccCCeeEEEEEc--CCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence            9999966678889999999999  9999999999999999998766554444432   1           1356677767


Q ss_pred             CeEEEEecCCeEEEEeCCCCccccccccC---------cccccceEEEeecCCCCCCCeEEEee--------c--CCeEE
Q psy12911        171 PLAVVGTAGRGIVLYQLEGKPQEFKKTES---------PLKYQNRCIAIFRDKKKQPAGYGLGS--------V--EGRVA  231 (356)
Q Consensus       171 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~--------~--dg~i~  231 (356)
                      +.++..+..+.|.+||+.+..........         .+.-.++.++.+..    +.++++.-        .  .-.++
T Consensus       358 ~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~----gs~maT~E~~~d~~~~~~~e~~LK  433 (792)
T KOG1963|consen  358 NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF----GSWMATLEARIDKFNFFDGEVSLK  433 (792)
T ss_pred             CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc----ceEEEEeeeeehhhhccCceEEEE
Confidence            78888999999999999887544322211         11223455555555    56666653        2  23478


Q ss_pred             EEEeCCCCCCCcceee-----eecCCCCCCCcccccceEEEEE-eCCCC-EEEEEcCCCeEEEEEcCcce----------
Q psy12911        232 IQYVNPANPKDNFTFK-----CHRSNGGAGGVQDIYAVNGIVF-HPVHG-TLATVGSEGTFSFWDKDART----------  294 (356)
Q Consensus       232 i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~-sp~~~-~l~s~~~dg~i~iwd~~~~~----------  294 (356)
                      +|..+...  ..+.+.     .|..           .+...++ +|... .+++++.||.++||-+...+          
T Consensus       434 FW~~n~~~--kt~~L~T~I~~PH~~-----------~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~  500 (792)
T KOG1963|consen  434 FWQYNPNS--KTFILNTKINNPHGN-----------AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWT  500 (792)
T ss_pred             EEEEcCCc--ceeEEEEEEecCCCc-----------eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceE
Confidence            88886653  222222     2332           3334444 44333 89999999999999884322          


Q ss_pred             ecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        295 KLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       295 ~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      +...-.-|..++++++|+.||..|+.+.+
T Consensus       501 c~~i~sy~k~~i~a~~fs~dGslla~s~~  529 (792)
T KOG1963|consen  501 CKAIGSYHKTPITALCFSQDGSLLAVSFD  529 (792)
T ss_pred             EeeeeccccCcccchhhcCCCcEEEEecC
Confidence            21111236789999999999998888854

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.87  E-value=8.1e-19  Score=147.05  Aligned_cols=266  Identities=12%  Similarity=0.088  Sum_probs=171.6

Q ss_pred             EEEEEeCCCeEEEEeccCCCc-eeeeeeccCCcceeEEEEccCCCeEEEEc-CCCeEEEEEcCC-Cceee--ecccCCCe
Q psy12911         46 FLIAGSWDNNVRCWEVEPNGK-TIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWDLAS-NQSMQ--VAQHDAPV  120 (356)
Q Consensus        46 ~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~-~~~~~--~~~~~~~v  120 (356)
                      ..++...++.|++|++.+++. .....+. +.+....++++|++++|++++ .++.|.+|++.. ++...  ........
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p   82 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP   82 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence            344446789999999975332 3334443 446678899999999987765 478999999973 33321  22233456


Q ss_pred             eEEEEEeCCCCCeEEEEEC-CCeEEEEeCCCC----CceEEEeCC--CeeEEEecCCCeEEEEe-cCCeEEEEeCCCCcc
Q psy12911        121 KTCHWIKAPNYTCLMTGSW-DKTLKFWDLRTP----QPIMTINLP--ERCYCADVDYPLAVVGT-AGRGIVLYQLEGKPQ  192 (356)
Q Consensus       121 ~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~  192 (356)
                      ..++++  |+++++++++. ++.|.+||+.+.    +.+..+...  .....+++++..++++. .++.|.+||+++...
T Consensus        83 ~~i~~~--~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         83 THISTD--HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             eEEEEC--CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence            789999  99998888764 789999999743    233333332  23455677777776554 569999999986322


Q ss_pred             cc----ccccCcccccceEEEeecCCCCCCCeEEEeec-CCeEEEEEeCCCCC--CCcceeeeecCCCCCCCcccccceE
Q psy12911        193 EF----KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV-EGRVAIQYVNPANP--KDNFTFKCHRSNGGAGGVQDIYAVN  265 (356)
Q Consensus       193 ~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-dg~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~  265 (356)
                      ..    .............++|+|+    +.+++++.. ++.|.+|+++....  +.+..+.....     .........
T Consensus       161 l~~~~~~~~~~~~g~~p~~~~~~pd----g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~-----~~~~~~~~~  231 (330)
T PRK11028        161 LVAQEPAEVTTVEGAGPRHMVFHPN----QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA-----DFSDTRWAA  231 (330)
T ss_pred             ccccCCCceecCCCCCCceEEECCC----CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC-----cCCCCccce
Confidence            11    1111122445678999999    778877765 99999999974321  22222221111     000001334


Q ss_pred             EEEEeCCCCEEEEEcC-CCeEEEEEcCcceecCCCCCC---ccceEEEEECCCCCEEEEEec
Q psy12911        266 GIVFHPVHGTLATVGS-EGTFSFWDKDARTKLKPSEAM---DMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       266 ~i~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      .+.++|+|++|+++.. ++.|.+|++.......++.++   ......++|+|||++|+++..
T Consensus       232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        232 DIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             eEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence            6899999999988854 789999998643211111112   124568999999999999875

>KOG1188|consensus

Probab=99.87  E-value=1.1e-20  Score=145.97  Aligned_cols=191  Identities=17%  Similarity=0.268  Sum_probs=147.0

Q ss_pred             CeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe--CCC--ee
Q psy12911         89 TKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN--LPE--RC  163 (356)
Q Consensus        89 ~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~--~~  163 (356)
                      ..+|++...|.|++||..+++.+. +.++...++.+.|.-......+.+|+.||+|++||+|+......+.  .+.  .-
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            568888889999999999988877 8889999999999832256789999999999999999876554443  222  34


Q ss_pred             EEEec--CCCeEEEEec----CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        164 YCADV--DYPLAVVGTA----GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       164 ~~~~~--~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                      .+++.  ..+.+++|+.    +-.+.+||+|...+.+......|...|+++.|+|..   +++|++|+.||.+.+||++.
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~---pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD---PNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC---CCeEEeecccceEEeeecCC
Confidence            45555  3456666643    678999999999887888888899999999999985   88999999999999999965


Q ss_pred             CCC-CCcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcc
Q psy12911        238 ANP-KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       238 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~  293 (356)
                      ... ..+.....+..           .|.++.|+.++ +.|.+-+..++..+|+++.+
T Consensus       198 d~EeDaL~~viN~~s-----------SI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  198 DNEEDALLHVINHGS-----------SIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             CcchhhHHHhhcccc-----------eeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence            421 12222233333           68888888777 45777777788888877643

>KOG1188|consensus

Probab=99.87  E-value=2.9e-20  Score=143.73  Aligned_cols=259  Identities=17%  Similarity=0.206  Sum_probs=184.1

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCC-cceeEEEEccCCCeEEEE
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS-EPVLDVAWIDDGTKVFMA   94 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~   94 (356)
                      ....+.++.+++|...++.++|..+. .+..+.+|+.||+|++||++..++........+. .+..+++.+..++.+++|
T Consensus        57 ~~tg~~l~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~G  135 (376)
T KOG1188|consen   57 KGTGQLLEEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACG  135 (376)
T ss_pred             ccchhhhheecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEec
Confidence            33456778889999999999998742 2478999999999999999987666656666666 567777777677788887


Q ss_pred             cC----CCeEEEEEcCCCce-ee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC----ceEEEeCCCee
Q psy12911         95 GC----DKTVKCWDLASNQS-MQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ----PIMTINLPERC  163 (356)
Q Consensus        95 ~~----dg~i~vwd~~~~~~-~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~  163 (356)
                      ..    +-.|.+||++..+. +.  ...|...|++++|+| .+.++|++|+.||.|.+||+....    ++..++....+
T Consensus       136 tE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP-~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI  214 (376)
T KOG1188|consen  136 TELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP-SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSI  214 (376)
T ss_pred             cccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC-CCCCeEEeecccceEEeeecCCCcchhhHHHhhccccee
Confidence            54    67899999998766 44  567999999999997 678899999999999999987652    45666666666


Q ss_pred             EEEecCC---CeEEEEecCCeEEEEeCCCCccccccccCcccccc--------eEEEe-ecCCCCCCCeEEEeec-CCeE
Q psy12911        164 YCADVDY---PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQN--------RCIAI-FRDKKKQPAGYGLGSV-EGRV  230 (356)
Q Consensus       164 ~~~~~~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i--------~~~~~-~~~~~~~~~~~~~~~~-dg~i  230 (356)
                      -.+.+.+   ..+.+-+...+..+|+++.+..............+        .-+-. +|..   ...+++++. -+..
T Consensus       215 ~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~---~~~~~l~g~~~n~~  291 (376)
T KOG1188|consen  215 HLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGD---KDTCALAGTDSNKG  291 (376)
T ss_pred             eeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCC---cceEEEeccccCce
Confidence            6666555   37889999999999999887633322221111000        11111 1221   334444443 6666


Q ss_pred             EEEEeCCC----CCCCcceeee-ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        231 AIQYVNPA----NPKDNFTFKC-HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       231 ~i~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                      .++-+...    ....+..+.+ |..           .|+++.|...+.++.+|++||.+.+|..
T Consensus       292 ~~~~~~~~~s~~~~~~~a~l~g~~~e-----------iVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  292 TIFPLVDTSSGSLLTEPAILQGGHEE-----------IVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             eEEEeeecccccccCccccccCCcHH-----------HHHHHhhhcccceeeccCCCceEEEEec
Confidence            66655421    1233344444 333           6888999888999999999999999996

>KOG1523|consensus

Probab=99.86  E-value=1.9e-19  Score=138.12  Aligned_cols=249  Identities=14%  Similarity=0.210  Sum_probs=185.3

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-ceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEc
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL  105 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  105 (356)
                      --..+|+|.+|++|.   ..+|++..+..|.||...... ....+++..|...|+.++|+|..+.|++++.|..-+||..
T Consensus         8 ~~~~pitchAwn~dr---t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDR---TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             eccCceeeeeecCCC---ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            345799999999999   999999999999999998866 6777899999999999999999999999999999999998


Q ss_pred             -CCCce---eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCe
Q psy12911        106 -ASNQS---MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRG  181 (356)
Q Consensus       106 -~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  181 (356)
                       ..++.   +.+..++..++++.|+  |..+.|++|+....|.||-++....-.                          
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~Ws--P~enkFAVgSgar~isVcy~E~ENdWW--------------------------  136 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWS--PKENKFAVGSGARLISVCYYEQENDWW--------------------------  136 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeec--CcCceEEeccCccEEEEEEEeccccee--------------------------
Confidence             44433   3377899999999999  999999999999999888754332110                          


Q ss_pred             EEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC--CCcceeeeecCCCC--CCC
Q psy12911        182 IVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP--KDNFTFKCHRSNGG--AGG  257 (356)
Q Consensus       182 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~--~~~~~~~~~~~~~~--~~~  257 (356)
                                 ..+.+..+++..|.++.|+|+    +.++++|+.|+..+++..-.+..  ++.-.--+.+....  ...
T Consensus       137 -----------VsKhikkPirStv~sldWhpn----nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E  201 (361)
T KOG1523|consen  137 -----------VSKHIKKPIRSTVTSLDWHPN----NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE  201 (361)
T ss_pred             -----------hhhhhCCccccceeeeeccCC----cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence                       112234467788999999999    88999999999999987521100  00000000000000  000


Q ss_pred             c-ccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce-ecCCCCCCccceEEEEECCCCCEEEEE
Q psy12911        258 V-QDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART-KLKPSEAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       258 ~-~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                      . .....+..+.|+|+|..|+-.+.|..+.+=|..... .+..+....-+..++.|-.+...++.|
T Consensus       202 ~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag  267 (361)
T KOG1523|consen  202 ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAG  267 (361)
T ss_pred             hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecC
Confidence            0 122389999999999999999999999999987654 344444334677888887776655544

>KOG1587|consensus

Probab=99.86  E-value=1.8e-19  Score=154.70  Aligned_cols=254  Identities=14%  Similarity=0.156  Sum_probs=182.7

Q ss_pred             CeEEEEeccCCCceeeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEEEEEcCCCcee-------eecccCCCeeEEEE
Q psy12911         54 NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDLASNQSM-------QVAQHDAPVKTCHW  125 (356)
Q Consensus        54 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~v~~~~~  125 (356)
                      +.+.||++... ......+. -...|.+++|+| +..+++.|..+|+|.+||++.+...       ....|..+++.+.|
T Consensus       222 ~~~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNP-NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCC-CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            47999999885 33333343 578999999999 6667888888999999999877652       13468999999999


Q ss_pred             EeCCCCCeEEEEECCCeEEEEeCCCCCc-eEEE------------eCCCeeEEEecC---CCeEEEEecCCeEEEEeCCC
Q psy12911        126 IKAPNYTCLMTGSWDKTLKFWDLRTPQP-IMTI------------NLPERCYCADVD---YPLAVVGTAGRGIVLYQLEG  189 (356)
Q Consensus       126 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~------------~~~~~~~~~~~~---~~~~~~~~~d~~i~i~d~~~  189 (356)
                      ...+.+.-+++++.||.|..|+++.-.. ....            .....+.++.+.   ...+++|+.+|.|.--+-.+
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            8545555699999999999998875422 1111            111123333332   35889999999998744433


Q ss_pred             Ccccc------ccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccc
Q psy12911        190 KPQEF------KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYA  263 (356)
Q Consensus       190 ~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      .....      ......|.+.+.++.++|-.    ..++..+.|..++||...... .++..+..+..           .
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~----~k~fls~gDW~vriWs~~~~~-~Pl~~~~~~~~-----------~  443 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFY----PKNFLSVGDWTVRIWSEDVIA-SPLLSLDSSPD-----------Y  443 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCc----cceeeeeccceeEeccccCCC-Ccchhhhhccc-----------e
Confidence            32222      22334567889999999983    344444449999999987332 56777776665           7


Q ss_pred             eEEEEEeCCC-CEEEEEcCCCeEEEEEcCcc--eecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        264 VNGIVFHPVH-GTLATVGSEGTFSFWDKDAR--TKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       264 i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +++++|||.. ..++++..||.|.+||+...  .++.+...+....+.+.|++.|+.|++|...+
T Consensus       444 v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G  508 (555)
T KOG1587|consen  444 VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG  508 (555)
T ss_pred             eeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCC
Confidence            9999999987 67888889999999998643  44555555566778899999999999998766

>KOG0650|consensus

Probab=99.86  E-value=5.4e-20  Score=152.20  Aligned_cols=237  Identities=12%  Similarity=0.135  Sum_probs=178.0

Q ss_pred             eeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEe
Q psy12911         68 IPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD  147 (356)
Q Consensus        68 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd  147 (356)
                      +...+.+|++.|.++...|.|.+|++|+.||+|+||.+.++.+++.....+.|.+++|+|.++-..|+++-.+. +.|.+
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivn  470 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVN  470 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeC
Confidence            34567899999999999999999999999999999999999999988888999999999766666666655443 66665


Q ss_pred             CCCCC---------ce-----------------------------EEEeCCCe--eEEEecCCCeEEEEec---CCeEEE
Q psy12911        148 LRTPQ---------PI-----------------------------MTINLPER--CYCADVDYPLAVVGTA---GRGIVL  184 (356)
Q Consensus       148 ~~~~~---------~~-----------------------------~~~~~~~~--~~~~~~~~~~~~~~~~---d~~i~i  184 (356)
                      ..-|.         .+                             ..+.....  .+.+.-.|+++++...   ...|.|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence            43221         00                             11111122  2334445678887655   468899


Q ss_pred             EeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccce
Q psy12911        185 YQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAV  264 (356)
Q Consensus       185 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  264 (356)
                      +++......  ......++.+.++.|+|.    ..++++++ ...|+|||+...  ..+..+.....           .|
T Consensus       551 HQLSK~~sQ--~PF~kskG~vq~v~FHPs----~p~lfVaT-q~~vRiYdL~kq--elvKkL~tg~k-----------wi  610 (733)
T KOG0650|consen  551 HQLSKRKSQ--SPFRKSKGLVQRVKFHPS----KPYLFVAT-QRSVRIYDLSKQ--ELVKKLLTGSK-----------WI  610 (733)
T ss_pred             Eeccccccc--CchhhcCCceeEEEecCC----CceEEEEe-ccceEEEehhHH--HHHHHHhcCCe-----------ee
Confidence            998765422  222234678999999998    45565555 456999999654  44444444333           79


Q ss_pred             EEEEEeCCCCEEEEEcCCCeEEEEEcCcc-eecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        265 NGIVFHPVHGTLATVGSEGTFSFWDKDAR-TKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       265 ~~i~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ..++.+|.|.-|+.|+.|+.+..+|+.-. ++.++++-|...+++|+|++.-.++++|+.|+
T Consensus       611 S~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDg  672 (733)
T KOG0650|consen  611 SSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDG  672 (733)
T ss_pred             eeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCC
Confidence            99999999999999999999999998744 67888999999999999999999999998665

>KOG1587|consensus

Probab=99.86  E-value=1.7e-19  Score=154.89  Aligned_cols=254  Identities=14%  Similarity=0.208  Sum_probs=182.4

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceee----eeeccCCcceeEEEEccCCC--eEEE
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIP----KSMQGMSEPVLDVAWIDDGT--KVFM   93 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~--~l~~   93 (356)
                      .+...+. -...|+|++|+|..  +.+||.|..+|+|.+||+...+..+.    .....|..+|+.+.|..+..  -+++
T Consensus       234 ~Pe~~~~-~~s~v~~~~f~p~~--p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s  310 (555)
T KOG1587|consen  234 TPELVLE-SPSEVTCLKFCPFD--PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFS  310 (555)
T ss_pred             CceEEEe-cCCceeEEEeccCC--cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEE
Confidence            3333343 46799999999987  68999999999999999988554222    23346899999999977544  4999


Q ss_pred             EcCCCeEEEEEcCCCce------eeec-------ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC---CC-----
Q psy12911         94 AGCDKTVKCWDLASNQS------MQVA-------QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT---PQ-----  152 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~------~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~-----  152 (356)
                      ++.||.|..|+++.-..      ....       .....+++++|.+ .+...++.|+++|.|.-=+-..   ..     
T Consensus       311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~-~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~  389 (555)
T KOG1587|consen  311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP-TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK  389 (555)
T ss_pred             EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc-CCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence            99999999998764322      1111       2335688999985 5667899999999988733222   21     


Q ss_pred             ceEEEeC-CCee--EEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCe
Q psy12911        153 PIMTINL-PERC--YCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGR  229 (356)
Q Consensus       153 ~~~~~~~-~~~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~  229 (356)
                      .+..+.. ...+  +...+.+..++..+.|-+++||.......+..... .....+++++|+|..   +..++++..+|.
T Consensus       390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptr---pavF~~~d~~G~  465 (555)
T KOG1587|consen  390 GHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTR---PAVFATVDGDGN  465 (555)
T ss_pred             ccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEcCcC---ceEEEEEcCCCc
Confidence            1112222 2233  33444455555555599999999874333333332 233458999999986   678999999999


Q ss_pred             EEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        230 VAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       230 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                      +.+||+......++.+.+.+..           ..+.+.|++.|+.|++|...|++++|++..
T Consensus       466 l~iWDLl~~~~~Pv~s~~~~~~-----------~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  466 LDIWDLLQDDEEPVLSQKVCSP-----------ALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eehhhhhccccCCccccccccc-----------ccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            9999998777777777766644           678899999999999999999999999864

>KOG2110|consensus

Probab=99.86  E-value=1.5e-18  Score=135.67  Aligned_cols=227  Identities=14%  Similarity=0.144  Sum_probs=172.3

Q ss_pred             CcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCcee-eecccCCCeeEEEEEeCCCCCeEEEEECC--CeEEEEeCCCCC
Q psy12911         76 SEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWD--KTLKFWDLRTPQ  152 (356)
Q Consensus        76 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~  152 (356)
                      ...+..+.|+.+...|..|+.|| .++|+.+.-... ........|.-+-|+    ..+++..+.+  +.+++++++.+.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS----SSLvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS----SSLVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc----cceeEEEecCCCceEEEEEcccCc
Confidence            34566777999998888998888 577777654331 122233345555554    3455555544  459999999999


Q ss_pred             ceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccC-cccccceEEEeecCCCCCCCeEEEe--ecCCe
Q psy12911        153 PIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES-PLKYQNRCIAIFRDKKKQPAGYGLG--SVEGR  229 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~--~~dg~  229 (356)
                      .+..+..+..++++..+-+.+++.-.+. |+|||++..+........ ++...+.++++++.    +.+++.-  ...|.
T Consensus        80 ~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~----n~ylAyp~s~t~Gd  154 (391)
T KOG2110|consen   80 TICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA----NCYLAYPGSTTSGD  154 (391)
T ss_pred             eEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCC----CceEEecCCCCCce
Confidence            9999999999999999999998888776 999999987644333332 23334555555554    4566543  35789


Q ss_pred             EEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCe-EEEEEcCcceecCCCCCC--ccce
Q psy12911        230 VAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGT-FSFWDKDARTKLKPSEAM--DMSI  306 (356)
Q Consensus       230 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v  306 (356)
                      |.+||...-  +....+.+|++           ++-+++|+++|.+||++++.|+ |||+.+.+|+.+.+|+.-  ...|
T Consensus       155 V~l~d~~nl--~~v~~I~aH~~-----------~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~I  221 (391)
T KOG2110|consen  155 VVLFDTINL--QPVNTINAHKG-----------PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSI  221 (391)
T ss_pred             EEEEEcccc--eeeeEEEecCC-----------ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEE
Confidence            999999766  67888999998           9999999999999999999997 699999999999988743  3468


Q ss_pred             EEEEECCCCCEEEEEeccC
Q psy12911        307 STCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       307 ~~~~~s~~~~~l~~~s~~d  325 (356)
                      .+++|+||+++|+++|+.+
T Consensus       222 ySL~Fs~ds~~L~~sS~Te  240 (391)
T KOG2110|consen  222 YSLSFSPDSQFLAASSNTE  240 (391)
T ss_pred             EEEEECCCCCeEEEecCCC
Confidence            8999999999999998766

>KOG1007|consensus

Probab=99.85  E-value=6.1e-20  Score=138.92  Aligned_cols=239  Identities=17%  Similarity=0.295  Sum_probs=156.5

Q ss_pred             CCCCCCCceEEeC-CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee-----ccCCcceeEEEEcc-
Q psy12911         14 STPNPNKDFEVVS-PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM-----QGMSEPVLDVAWID-   86 (356)
Q Consensus        14 ~~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-----~~~~~~v~~~~~s~-   86 (356)
                      ++..+...+..+. .+-+.|.|+.|.|++   ..|++-. |..|.+|+++.... +...+     ..|....++-+|+| 
T Consensus       107 S~~~tlE~v~~Ldteavg~i~cvew~Pns---~klasm~-dn~i~l~~l~ess~-~vaev~ss~s~e~~~~ftsg~WspH  181 (370)
T KOG1007|consen  107 SNSSTLECVASLDTEAVGKINCVEWEPNS---DKLASMD-DNNIVLWSLDESSK-IVAEVLSSESAEMRHSFTSGAWSPH  181 (370)
T ss_pred             cccchhhHhhcCCHHHhCceeeEEEcCCC---CeeEEec-cCceEEEEcccCcc-hheeecccccccccceecccccCCC
Confidence            4445555666665 566799999999998   7888776 78999999987433 22222     23566788899999 


Q ss_pred             -CCCeEEEEcCCCeEEEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeCCCe
Q psy12911         87 -DGTKVFMAGCDKTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINLPER  162 (356)
Q Consensus        87 -~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~  162 (356)
                       +++.+++.+ |+++..||+++.+...  ...|...|..+.|+| ....+|++|+.||.|+|||.+.. .+++++..|..
T Consensus       182 Hdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp-nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH  259 (370)
T KOG1007|consen  182 HDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP-NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH  259 (370)
T ss_pred             CccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCC-CceEEEEEcCCCccEEEEeccCCCccccccCCCce
Confidence             888888865 7999999999877654  456899999999994 34457899999999999999875 46777776653


Q ss_pred             -eEEEecCC---CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        163 -CYCADVDY---PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       163 -~~~~~~~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                       +.++.++.   +++++++.|..+.+|....-..            -..+.+-.+....      -..+..=++--+   
T Consensus       260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS------------E~qi~~~~dese~------e~~dseer~kpL---  318 (370)
T KOG1007|consen  260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS------------EQQIEFEDDESES------EDEDSEERVKPL---  318 (370)
T ss_pred             EEEEEEecCccceEEEecCCCceeEEEecccccc------------ccccccccccccC------cchhhHHhcccc---
Confidence             44443332   3666777777777766543110            0011111110000      000000000000   


Q ss_pred             CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcC
Q psy12911        239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKD  291 (356)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~  291 (356)
                      .-..+.++..|..           .|++++||.-.. .+|+-+.||++.|=.+.
T Consensus       319 ~dg~l~tydehED-----------SVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  319 QDGQLETYDEHED-----------SVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccccccccccc-----------ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            0023445666666           899999998665 56788999999887665

>KOG1538|consensus

Probab=99.85  E-value=7.5e-20  Score=153.52  Aligned_cols=244  Identities=14%  Similarity=0.236  Sum_probs=187.9

Q ss_pred             CCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE
Q psy12911         15 TPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA   94 (356)
Q Consensus        15 ~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~   94 (356)
                      +.+.-...+.+++|++.|+|++|+.+|   +.+|+|+.|..|.+|.-.-.|.    .-..|...|.|+.|+|-...|+++
T Consensus        39 D~ndG~llqtLKgHKDtVycVAys~dG---krFASG~aDK~VI~W~~klEG~----LkYSH~D~IQCMsFNP~~h~LasC  111 (1081)
T KOG1538|consen   39 DTSDGTLLQPLKGHKDTVYCVAYAKDG---KRFASGSADKSVIIWTSKLEGI----LKYSHNDAIQCMSFNPITHQLASC  111 (1081)
T ss_pred             eCCCcccccccccccceEEEEEEccCC---ceeccCCCceeEEEecccccce----eeeccCCeeeEeecCchHHHhhhc
Confidence            344556678899999999999999999   9999999999999999765221    123599999999999988899998


Q ss_pred             cCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----eeEEEecCC
Q psy12911         95 GCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----RCYCADVDY  170 (356)
Q Consensus        95 ~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~  170 (356)
                      +. ...-+|........ .......+.+++|.  .||++++.|-.+|+|.+-+ .+++....++.++    +++.+.+..
T Consensus       112 sL-sdFglWS~~qK~V~-K~kss~R~~~CsWt--nDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p  186 (1081)
T KOG1538|consen  112 SL-SDFGLWSPEQKSVS-KHKSSSRIICCSWT--NDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNP  186 (1081)
T ss_pred             ch-hhccccChhhhhHH-hhhhheeEEEeeec--CCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecC
Confidence            86 34678887654433 23345678899999  9999999999999999986 4555555554322    344444332


Q ss_pred             -------CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCc
Q psy12911        171 -------PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDN  243 (356)
Q Consensus       171 -------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~  243 (356)
                             +.+++.....++.+|.+.+....   ..........|+++.++    |.+++.|+.|+.+.+|.-+.   ..+
T Consensus       187 ~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig---k~r~L~FdP~CisYf~N----GEy~LiGGsdk~L~~fTR~G---vrL  256 (1081)
T KOG1538|consen  187 SSGEGRNDILAVADWGQTLSFYQLSGKQIG---KDRALNFDPCCISYFTN----GEYILLGGSDKQLSLFTRDG---VRL  256 (1081)
T ss_pred             CCCCCccceEEEEeccceeEEEEecceeec---ccccCCCCchhheeccC----CcEEEEccCCCceEEEeecC---eEE
Confidence                   37888899999999999875322   12234567789999999    89999999999999986543   233


Q ss_pred             ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        244 FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      -++.....           +|+.++..|++++++.|+.||+|..|++-
T Consensus       257 GTvg~~D~-----------WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  257 GTVGEQDS-----------WIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             eeccccce-----------eEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            33333333           89999999999999999999999999874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=1.3e-17  Score=145.51  Aligned_cols=278  Identities=26%  Similarity=0.393  Sum_probs=205.7

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCC-cceeEEEE-ccCCC-eEEEEcC-CCe
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS-EPVLDVAW-IDDGT-KVFMAGC-DKT   99 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~-s~~~~-~l~~~~~-dg~   99 (356)
                      ....|...|.++.+.+.+   ..++.++.|+.+.+|+..... .....+..+. ..+..+.+ ++++. .++..+. |+.
T Consensus        60 ~~~~~~~~i~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  135 (466)
T COG2319          60 LLRGHEDSITSIAFSPDG---ELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT  135 (466)
T ss_pred             eeeeccceEEEEEECCCC---cEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCcc
Confidence            567899999999999999   899999999999999998732 2335555533 37777777 78887 5555455 999


Q ss_pred             EEEEEcCC-Cce-eeecccCCCeeEEEEEeCCCCCeEEEEEC-CCeEEEEeCCCCCceEEEeCCC-eeEE--EecCCCeE
Q psy12911        100 VKCWDLAS-NQS-MQVAQHDAPVKTCHWIKAPNYTCLMTGSW-DKTLKFWDLRTPQPIMTINLPE-RCYC--ADVDYPLA  173 (356)
Q Consensus       100 i~vwd~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~~~--~~~~~~~~  173 (356)
                      +.+|+... ... .....|...|..+.|+  +++..+++++. |+.+++|++..+..+..+..+. .+.+  +.+.+..+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  213 (466)
T COG2319         136 VKLWDLSTPGKLIRTLEGHSESVTSLAFS--PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL  213 (466)
T ss_pred             EEEEEecCCCeEEEEEecCcccEEEEEEC--CCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceE
Confidence            99999997 444 4488899999999999  88888888885 9999999999988888888644 3333  34444434


Q ss_pred             EE-EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCC
Q psy12911        174 VV-GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSN  252 (356)
Q Consensus       174 ~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  252 (356)
                      ++ ++.|+.|.+||...+..... ....+.... ...|+++    +..+++++.++.+++|+...... ....+..|.. 
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~-~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~-  285 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSV-VSSFSPD----GSLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSS-  285 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEee-ecCCCCcce-eEeECCC----CCEEEEecCCCcEEEeeecCCCc-EEEEEecCCc-
Confidence            44 48999999998874432221 122233332 2278888    56888999999999999986642 2333344444 


Q ss_pred             CCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC--CCccceEEEEECCCCCEEEEEeccC
Q psy12911        253 GGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE--AMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       253 ~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                                .+.++.|+|++..+++++.|+.+.+||..+........  .|...+..+.|.+++..++.+...|
T Consensus       286 ----------~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  350 (466)
T COG2319         286 ----------SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD  350 (466)
T ss_pred             ----------cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCC
Confidence                      89999999988888889999999999998877665554  7877899999943435666664333

>KOG1009|consensus

Probab=99.84  E-value=4.3e-19  Score=140.25  Aligned_cols=257  Identities=17%  Similarity=0.204  Sum_probs=177.4

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEecc--------C------CCceeeeeeccCCcceeEEEEc
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVE--------P------NGKTIPKSMQGMSEPVLDVAWI   85 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~--------~------~~~~~~~~~~~~~~~v~~~~~s   85 (356)
                      .-...+..|..+|+++.|+|+|   ++||+|+.+|.|.+|...        +      ......+.+.+|...|..++|+
T Consensus        56 ~y~s~Ls~H~~aVN~vRf~p~g---elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws  132 (434)
T KOG1009|consen   56 EYLSSLSRHTRAVNVVRFSPDG---ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS  132 (434)
T ss_pred             EEeecccCCcceeEEEEEcCCc---CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc
Confidence            3455688999999999999999   999999999999999876        1      1134456778899999999999


Q ss_pred             cCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC-----
Q psy12911         86 DDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL-----  159 (356)
Q Consensus        86 ~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----  159 (356)
                      |++.++++++.|+.+++||+..|+... +.+|...+..++|.  |-++++++-+.|...+.+.+...+.++....     
T Consensus       133 ~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawD--pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~  210 (434)
T KOG1009|consen  133 PDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWD--PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA  210 (434)
T ss_pred             CCCceeeeeeccceEEEEEeccceeEeeccccccccceeecc--hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence            999999999999999999999999988 78899999999999  8889999999998888887765544333220     


Q ss_pred             ------CC---------------eeEEEecCCCeEEEEec----C-----CeEEEEeCCCCccccccccCcccccceEEE
Q psy12911        160 ------PE---------------RCYCADVDYPLAVVGTA----G-----RGIVLYQLEGKPQEFKKTESPLKYQNRCIA  209 (356)
Q Consensus       160 ------~~---------------~~~~~~~~~~~~~~~~~----d-----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  209 (356)
                            +.               +-.++.+++.++++...    +     +..++|+-.....+...... .......+.
T Consensus       211 ~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~-~~k~~lavr  289 (434)
T KOG1009|consen  211 KAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS-PKKPALAVR  289 (434)
T ss_pred             cccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC-CCcceEEEE
Confidence                  00               13345555555554322    1     22344443322222222211 122233333


Q ss_pred             eecCC-------CC------CCCeEEEeecCCeEEEEEeCCCCCCCcceee-eecCCCCCCCcccccceEEEEEeCCCCE
Q psy12911        210 IFRDK-------KK------QPAGYGLGSVEGRVAIQYVNPANPKDNFTFK-CHRSNGGAGGVQDIYAVNGIVFHPVHGT  275 (356)
Q Consensus       210 ~~~~~-------~~------~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~sp~~~~  275 (356)
                      ++|-.       ..      -...+++......+++||....  .++.... -|-.           .|+.++|++||.+
T Consensus       290 ~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~--~P~~~v~nihy~-----------~iTDiaws~dg~~  356 (434)
T KOG1009|consen  290 FSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTL--EPLAVVDNIHYS-----------AITDIAWSDDGSV  356 (434)
T ss_pred             eeeeEEEeccccccccccccccceEEEEeecceEEEeccccc--cceEEEeeeeee-----------eecceeecCCCcE
Confidence            33320       00      0123333344556888888654  3444332 3433           8999999999999


Q ss_pred             EEEEcCCCeEEEEEcCccee
Q psy12911        276 LATVGSEGTFSFWDKDARTK  295 (356)
Q Consensus       276 l~s~~~dg~i~iwd~~~~~~  295 (356)
                      |+..+.||...+-.++..++
T Consensus       357 l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  357 LLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             EEEeccCCceEEEEEcchhc
Confidence            99999999988887776543

>KOG1517|consensus

Probab=99.84  E-value=8.1e-19  Score=154.34  Aligned_cols=279  Identities=14%  Similarity=0.190  Sum_probs=194.6

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeecc---CCcceeEEEEcc--CCCeEEEEcCCCeEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQG---MSEPVLDVAWID--DGTKVFMAGCDKTVK  101 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~---~~~~v~~~~~s~--~~~~l~~~~~dg~i~  101 (356)
                      +....-..+.|+|-.   ..++++...-.|+|||.+.+  .....+..   ....|+.+.+-.  |..++++|+.||.|+
T Consensus      1062 ~n~~~pk~~~~hpf~---p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFE---PQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred             cCCCCCceeeecCCC---ceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecccchhheeeeccCceEE
Confidence            333456678899998   88999887789999999873  22233332   235788888865  556899999999999


Q ss_pred             EEEcCCC-----ceee-ec-------ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe--eEEE
Q psy12911        102 CWDLASN-----QSMQ-VA-------QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER--CYCA  166 (356)
Q Consensus       102 vwd~~~~-----~~~~-~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~  166 (356)
                      ||+--..     +.+. ..       +-.+.-.-+.|.  ....+|+++|.-..|+|||....+.+..+.....  +.++
T Consensus      1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq--Q~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ--QQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTAL 1214 (1387)
T ss_pred             EecccccccCCceeEEeeccccccCccCCCCCeeeehh--hhCCeEEecCCeeEEEEEecccceeEeecccCCCccceee
Confidence            9964322     2221 11       111222445676  5555666666678999999998888888776553  2233


Q ss_pred             ec---CCCeEEEEecCCeEEEEeCCCCccc-cccccCccccc--ceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC
Q psy12911        167 DV---DYPLAVVGTAGRGIVLYQLEGKPQE-FKKTESPLKYQ--NRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP  240 (356)
Q Consensus       167 ~~---~~~~~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~  240 (356)
                      +.   .++.+++|..||.+++||.+..... .......|...  |..+.+.+.+   -..+++|+.+|.|++||++....
T Consensus      1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G---~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG---LGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred             cccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC---CcceeeeccCCeEEEEecccCcc
Confidence            32   3578999999999999999876532 12222344444  8888888873   23599999999999999987533


Q ss_pred             CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC-------ccceEEEEECC
Q psy12911        241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM-------DMSISTCALNH  313 (356)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~  313 (356)
                      ....+...|..-+        ..++++..|++...+|+|+. +.|+||++. |+.+..++.+       .+.+.+++|+|
T Consensus      1292 e~~~~iv~~~~yG--------s~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYG--------SALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred             cccceeeeccccC--------ccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc
Confidence            3334444443211        04899999999999999998 999999987 5665555433       34679999999


Q ss_pred             CCCEEEEEeccC
Q psy12911        314 NGQIFAYAVSYD  325 (356)
Q Consensus       314 ~~~~l~~~s~~d  325 (356)
                      .--+||+|+.|.
T Consensus      1362 ~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1362 HRLLLAAGSADS 1373 (1387)
T ss_pred             hhHhhhhccCCc
Confidence            999999986543

>KOG2919|consensus

Probab=99.84  E-value=1.2e-18  Score=133.97  Aligned_cols=262  Identities=13%  Similarity=0.158  Sum_probs=186.1

Q ss_pred             CCCCCCCccccCCCCCCCCceEEeC-CCCCCeeEEEec-------CCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec
Q psy12911          2 FGQPALSTTTTTSTPNPNKDFEVVS-PPEDSISCMAFS-------PSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ   73 (356)
Q Consensus         2 f~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~-------~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~   73 (356)
                      |+.|.....+....+...+....++ .-...|...+|-       |+.   .++|+.+.+.-|.+||.-++.........
T Consensus        76 ~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t---~l~a~ssr~~PIh~wdaftG~lraSy~~y  152 (406)
T KOG2919|consen   76 WNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST---NLFAVSSRDQPIHLWDAFTGKLRASYRAY  152 (406)
T ss_pred             EecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc---ceeeeccccCceeeeeccccccccchhhh
Confidence            4555543333322333333333332 234567777775       555   89999999999999999885444333333


Q ss_pred             cCCc---ceeEEEEccCCCeEEEEcCCCeEEEEEc-CCCceee--------ecccCCCeeEEEEEeCCCCCeEEEEECCC
Q psy12911         74 GMSE---PVLDVAWIDDGTKVFMAGCDKTVKCWDL-ASNQSMQ--------VAQHDAPVKTCHWIKAPNYTCLMTGSWDK  141 (356)
Q Consensus        74 ~~~~---~v~~~~~s~~~~~l~~~~~dg~i~vwd~-~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  141 (356)
                      .|..   .-.+++|+|||.+|++|. ...|++||+ +.|..-.        ..+..+-+.+++|+| .+...++.++...
T Consensus       153 dh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP-~~~~~~a~gsY~q  230 (406)
T KOG2919|consen  153 DHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSP-MDSKTLAVGSYGQ  230 (406)
T ss_pred             hhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccC-CCCcceeeecccc
Confidence            4544   346899999999999875 689999999 4444211        123467789999996 5666899999999


Q ss_pred             eEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEEEec-CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCC
Q psy12911        142 TLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVVGTA-GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQ  217 (356)
Q Consensus       142 ~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  217 (356)
                      .+-||.-..+.++..+-++..   -+++..+++.+++|.. +..|..||++....++..........-..|.|.-+.+  
T Consensus       231 ~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~--  308 (406)
T KOG2919|consen  231 RVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPK--  308 (406)
T ss_pred             eeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCC--
Confidence            999998888888888876653   4667778888888876 7899999999877666665544443455565554422  


Q ss_pred             CCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC
Q psy12911        218 PAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE  282 (356)
Q Consensus       218 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d  282 (356)
                      +..|++|+.+|.|++||++... ..+..+..+..           .++.++++|--.++|+++..
T Consensus       309 ~~~LasG~tdG~V~vwdlk~~g-n~~sv~~~~sd-----------~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  309 GEILASGDTDGSVRVWDLKDLG-NEVSVTGNYSD-----------TVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CceeeccCCCccEEEEecCCCC-Ccccccccccc-----------cccceecCcccceeeeccCc
Confidence            7899999999999999997632 34666667766           89999999998888888754

>KOG0771|consensus

Probab=99.84  E-value=7.8e-20  Score=145.23  Aligned_cols=191  Identities=17%  Similarity=0.185  Sum_probs=136.9

Q ss_pred             eEEEEccCCCeEEEEcCCCeEEEEEcCCCcee-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe
Q psy12911         80 LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN  158 (356)
Q Consensus        80 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  158 (356)
                      ..++|+.+|..|++++.||++|+|+......+ ....|...|.++.|+  |||+.|++-+.| ..+||+.+++..+....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS--~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS--PDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeC--CCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            68999999999999999999999996665554 478899999999999  999999999999 89999999996665544


Q ss_pred             CCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCC
Q psy12911        159 LPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNP  237 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~  237 (356)
                      ...                                       .+.....+.|+.+.....-++ +.....+.++.|++..
T Consensus       225 ~~~---------------------------------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~  265 (398)
T KOG0771|consen  225 PFS---------------------------------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISL  265 (398)
T ss_pred             Ccc---------------------------------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeee
Confidence            211                                       111122333333311101111 1112233344444422


Q ss_pred             CCC----CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC-CCCccceEEEEEC
Q psy12911        238 ANP----KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS-EAMDMSISTCALN  312 (356)
Q Consensus       238 ~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s  312 (356)
                      ...    +....+..+.            .|++++.|++|+++|.|+.||.|.|++..+.+.++.. +.|...|+.+.|+
T Consensus       266 w~~~~~l~~~~~~~~~~------------siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~  333 (398)
T KOG0771|consen  266 WSGSNFLRLRKKIKRFK------------SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFS  333 (398)
T ss_pred             eccccccchhhhhhccC------------cceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEc
Confidence            211    2222223333            6999999999999999999999999999988877655 5899999999999


Q ss_pred             CCCCEEEEEecc
Q psy12911        313 HNGQIFAYAVSY  324 (356)
Q Consensus       313 ~~~~~l~~~s~~  324 (356)
                      ||.+++++.+++
T Consensus       334 Pdsr~~~svSs~  345 (398)
T KOG0771|consen  334 PDSRYLASVSSD  345 (398)
T ss_pred             CCcCcccccccC
Confidence            999999996643

>KOG0649|consensus

Probab=99.84  E-value=3.1e-18  Score=126.72  Aligned_cols=200  Identities=17%  Similarity=0.202  Sum_probs=148.6

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc-----eee-eeeccCC-----cceeEEEEccCC
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK-----TIP-KSMQGMS-----EPVLDVAWIDDG   88 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~-~~~~~~~-----~~v~~~~~s~~~   88 (356)
                      ..+...++|.++|+.++|..     .+|++|+ ||.|+=|......+     .+. ....-|.     -.|+++-..|..
T Consensus        53 ~~iv~eqahdgpiy~~~f~d-----~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e  126 (325)
T KOG0649|consen   53 LKIVPEQAHDGPIYYLAFHD-----DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE  126 (325)
T ss_pred             cceeeccccCCCeeeeeeeh-----hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC
Confidence            34445589999999999984     4677776 59999998765322     000 0111122     368899999977


Q ss_pred             CeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-----
Q psy12911         89 TKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-----  162 (356)
Q Consensus        89 ~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----  162 (356)
                      +-++.++.|+.++-||+++|+..+ +.+|++.|.++.--  .....+++|++||++|+||.++++.++.+.....     
T Consensus       127 nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R--~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR  204 (325)
T KOG0649|consen  127 NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR--NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR  204 (325)
T ss_pred             CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec--ccCcceeecCCCccEEEEeccccceeEEeccccChhhcC
Confidence            777777789999999999999887 89999999999885  5556799999999999999999999988874332     


Q ss_pred             ------eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911        163 ------CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN  236 (356)
Q Consensus       163 ------~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  236 (356)
                            +.+++.+.+.++. +....+.+|.++..+.....   +....+..+.|..+      .+++++..+.+.-|.+.
T Consensus       205 p~~g~wigala~~edWlvC-GgGp~lslwhLrsse~t~vf---pipa~v~~v~F~~d------~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  205 PDWGKWIGALAVNEDWLVC-GGGPKLSLWHLRSSESTCVF---PIPARVHLVDFVDD------CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             cccCceeEEEeccCceEEe-cCCCceeEEeccCCCceEEE---ecccceeEeeeecc------eEEEeccccceeeeeec
Confidence                  4455555555554 45578999999987543222   34566777777766      68888888888888775


Q ss_pred             C
Q psy12911        237 P  237 (356)
Q Consensus       237 ~  237 (356)
                      .
T Consensus       275 G  275 (325)
T KOG0649|consen  275 G  275 (325)
T ss_pred             c
Confidence            4

>KOG0649|consensus

Probab=99.84  E-value=6.2e-18  Score=125.14  Aligned_cols=260  Identities=11%  Similarity=0.093  Sum_probs=180.6

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccC--------CCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEP--------NGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~--------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      .|.+-+++|.+   ++|++|+.+|.|.+..+..        .++..+...++|.++|+.++|.  ..+|++|+ ||.|+-
T Consensus        12 tvf~qa~sp~~---~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~g   85 (325)
T KOG0649|consen   12 TVFAQAISPSK---QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYG   85 (325)
T ss_pred             HHHHHhhCCcc---eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEE
Confidence            46667899998   9999999999999998864        2344445668999999999998  34777776 599999


Q ss_pred             EEcCCCce-------ee--eccc-----CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeE---E
Q psy12911        103 WDLASNQS-------MQ--VAQH-----DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCY---C  165 (356)
Q Consensus       103 wd~~~~~~-------~~--~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~  165 (356)
                      |..+....       ..  ..-|     --.|+++-..  |..+-++.++.|+.++-||+++|+..+++++|..-+   .
T Consensus        86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld--P~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv  163 (325)
T KOG0649|consen   86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD--PSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV  163 (325)
T ss_pred             eeehhhhhhccchhhhhhcCccccCcccCCccceeEec--cCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence            98764322       11  1112     2357888887  555566677789999999999999999999998533   2


Q ss_pred             EecCCCeEEEEecCCeEEEEeCCCCccccccccCc--------ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        166 ADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESP--------LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       166 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                      ..-....+++|+.||++++||.++.+.........        ...-|-+++.+.+      .++ ++....+.+|.++.
T Consensus       164 ~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed------Wlv-CGgGp~lslwhLrs  236 (325)
T KOG0649|consen  164 GRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED------WLV-CGGGPKLSLWHLRS  236 (325)
T ss_pred             ecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc------eEE-ecCCCceeEEeccC
Confidence            33345699999999999999999876432222111        1223455665544      444 45566789999998


Q ss_pred             CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCE
Q psy12911        238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI  317 (356)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  317 (356)
                      .+...++.+++              .+..+.|-  .+.+++++..+.|.-|.+. |..-..+........+..|+..--.
T Consensus       237 se~t~vfpipa--------------~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k  299 (325)
T KOG0649|consen  237 SESTCVFPIPA--------------RVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIK  299 (325)
T ss_pred             CCceEEEeccc--------------ceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceE
Confidence            86655555555              47778885  4577788888889999886 5554444444444556666544433


Q ss_pred             EEEEe
Q psy12911        318 FAYAV  322 (356)
Q Consensus       318 l~~~s  322 (356)
                      +++..
T Consensus       300 ~~s~a  304 (325)
T KOG0649|consen  300 FISIA  304 (325)
T ss_pred             EEEec
Confidence            44443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.83  E-value=4.7e-17  Score=136.45  Aligned_cols=269  Identities=14%  Similarity=0.145  Sum_probs=170.7

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEe-CCCeEEEEeccCCCc-eeeeeeccCCcceeEEEEccCCCeEEEEcC-C
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGS-WDNNVRCWEVEPNGK-TIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-D   97 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d   97 (356)
                      .+..+. +.+....++++|++   ++|++++ .++.|.+|+++..+. ....... .......++|+|++++|++++. +
T Consensus        27 ~~~~~~-~~~~~~~l~~spd~---~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~  101 (330)
T PRK11028         27 LLQVVD-VPGQVQPMVISPDK---RHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNA  101 (330)
T ss_pred             eeeEEe-cCCCCccEEECCCC---CEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCC
Confidence            344443 34567789999999   8877664 578999999974332 2222222 3345678999999999888765 8


Q ss_pred             CeEEEEEcCCC-ce---eeecccCCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCCCceE-------EEeCC--Cee
Q psy12911         98 KTVKCWDLASN-QS---MQVAQHDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTPQPIM-------TINLP--ERC  163 (356)
Q Consensus        98 g~i~vwd~~~~-~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-------~~~~~--~~~  163 (356)
                      +.|.+|++++. ..   +....+......++++  |+++++++++ .++.|.+||+.+...+.       .....  .+.
T Consensus       102 ~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~--p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~  179 (330)
T PRK11028        102 NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANID--PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRH  179 (330)
T ss_pred             CeEEEEEECCCCCCCCceeeccCCCcccEeEeC--CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCce
Confidence            89999999743 22   2222233456778888  8988886555 56999999997643221       11111  235


Q ss_pred             EEEecCCCeEEEEec-CCeEEEEeCCCC--ccc-ccccc---C--cccccceEEEeecCCCCCCCeEEEee-cCCeEEEE
Q psy12911        164 YCADVDYPLAVVGTA-GRGIVLYQLEGK--PQE-FKKTE---S--PLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQ  233 (356)
Q Consensus       164 ~~~~~~~~~~~~~~~-d~~i~i~d~~~~--~~~-~~~~~---~--~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~  233 (356)
                      +.+++++.+++++.. ++.|.+|+++..  ... .....   .  ........+.++|+    +++++++. .++.|.+|
T Consensus       180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd----g~~lyv~~~~~~~I~v~  255 (330)
T PRK11028        180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD----GRHLYACDRTASLISVF  255 (330)
T ss_pred             EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC----CCEEEEecCCCCeEEEE
Confidence            677788888888776 899999999742  211 11111   0  01112335888998    67777775 47899999


Q ss_pred             EeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC-CCeEEEEEcC--cce--ecCCCCCCccceEE
Q psy12911        234 YVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS-EGTFSFWDKD--ART--KLKPSEAMDMSIST  308 (356)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-dg~i~iwd~~--~~~--~~~~~~~~~~~v~~  308 (356)
                      +++....  ..++.++.....        ....+.++|+|++|+++.. +++|.+|+++  ++.  .+..+.. .....+
T Consensus       256 ~i~~~~~--~~~~~~~~~~~~--------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~-g~~P~~  324 (330)
T PRK11028        256 SVSEDGS--VLSFEGHQPTET--------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV-GQGPMW  324 (330)
T ss_pred             EEeCCCC--eEEEeEEEeccc--------cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc-CCCceE
Confidence            9965421  223333321110        3457899999999987765 8999999874  333  3344432 333455


Q ss_pred             EEE
Q psy12911        309 CAL  311 (356)
Q Consensus       309 ~~~  311 (356)
                      ++|
T Consensus       325 ~~~  327 (330)
T PRK11028        325 VSV  327 (330)
T ss_pred             EEE
Confidence            554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=1.3e-16  Score=139.20  Aligned_cols=280  Identities=21%  Similarity=0.373  Sum_probs=206.9

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeC-CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCC-eEEEEcC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSW-DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT-KVFMAGC   96 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~   96 (356)
                      ......+..|...|.+++|+|++   ..+++++. |+.+++|++..  ......+.+|...|.+++|+|++. .+++++.
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  219 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDG---KLLASGSSLDGTIKLWDLRT--GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS  219 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCC---CEEEecCCCCCceEEEEcCC--CceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence            45667788999999999999999   78888885 99999999987  345567777999999999999998 5555588


Q ss_pred             CCeEEEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc-eEEEeCC-CeeEE--EecCC
Q psy12911         97 DKTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP-IMTINLP-ERCYC--ADVDY  170 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~-~~~~~--~~~~~  170 (356)
                      |+.|++||...+....  +..|.... ...|+  +++..+++++.|+.+++||++.... +..+..+ ..+.+  +.+.+
T Consensus       220 d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  296 (466)
T COG2319         220 DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFS--PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG  296 (466)
T ss_pred             CCcEEEEECCCCcEEeeecCCCCcce-eEeEC--CCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCC
Confidence            9999999988777665  66677775 44788  8888899999999999999987765 4444333 33333  34445


Q ss_pred             CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe-ecCCeEEEEEeCCCCCCCcceeeee
Q psy12911        171 PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG-SVEGRVAIQYVNPANPKDNFTFKCH  249 (356)
Q Consensus       171 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~~~~~~~~~~~  249 (356)
                      ..+++++.|+.+.+||..............+...+..+.+ +..   +..++.+ ..|+.+.+|++....  ........
T Consensus       297 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~  370 (466)
T COG2319         297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD---GSLLVSGGSDDGTIRLWDLRTGK--PLKTLEGH  370 (466)
T ss_pred             CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCC---CCEEEEeecCCCcEEeeecCCCc--eeEEecCC
Confidence            6777788888899998887654333332234446888888 531   2455555 678889999887653  11111111


Q ss_pred             cCCCCCCCcccccceEEEEEeCCCCEEEE-EcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFHPVHGTLAT-VGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      .            .+..+.+++ ...++. +..++.+.+|+............+...+....+++++..++.++.+.
T Consensus       371 ~------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (466)
T COG2319         371 S------------NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN  434 (466)
T ss_pred             c------------eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCC
Confidence            1            278889988 544444 68899999999998877766665447889999999999999865443

>KOG2445|consensus

Probab=99.83  E-value=5.8e-18  Score=129.39  Aligned_cols=227  Identities=15%  Similarity=0.205  Sum_probs=159.9

Q ss_pred             CCCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC-------CceeeeeeccCCcceeEEEEcc
Q psy12911         14 STPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN-------GKTIPKSMQGMSEPVLDVAWID   86 (356)
Q Consensus        14 ~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-------~~~~~~~~~~~~~~v~~~~~s~   86 (356)
                      +...........+.|.+.|..+.|.+-. .++.+|+++.|+++.||.-...       ......++......|+.++|.|
T Consensus        44 ~~s~~W~~Ts~Wrah~~Si~rV~WAhPE-fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP  122 (361)
T KOG2445|consen   44 SDSGTWSCTSSWRAHDGSIWRVVWAHPE-FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAP  122 (361)
T ss_pred             CCCCceEEeeeEEecCCcEEEEEecCcc-ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecc
Confidence            3444555666678999999999997642 2499999999999999986321       1233456677788999999999


Q ss_pred             --CCCeEEEEcCCCeEEEEEcCCCcee------e--------ecccCCCeeEEEEEeCC-CCCeEEEEECC-----CeEE
Q psy12911         87 --DGTKVFMAGCDKTVKCWDLASNQSM------Q--------VAQHDAPVKTCHWIKAP-NYTCLMTGSWD-----KTLK  144 (356)
Q Consensus        87 --~~~~l~~~~~dg~i~vwd~~~~~~~------~--------~~~~~~~v~~~~~~~~~-~~~~l~~~~~d-----g~i~  144 (356)
                        -|-.||+++.||.++||+.-..--+      .        ...+..+..|+.|+|.. ...+|+.|+.+     +.++
T Consensus       123 ~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~  202 (361)
T KOG2445|consen  123 KHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVK  202 (361)
T ss_pred             hhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceE
Confidence              5668999999999999987543211      1        12366777888887432 23456666544     2566


Q ss_pred             EEeCCCCC-ceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEE
Q psy12911        145 FWDLRTPQ-PIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL  223 (356)
Q Consensus       145 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  223 (356)
                      ||....+. ....                                      ......+..+|+.++|.|+-......+++
T Consensus       203 Iye~~e~~rKw~k--------------------------------------va~L~d~~dpI~di~wAPn~Gr~y~~lAv  244 (361)
T KOG2445|consen  203 IYEYNENGRKWLK--------------------------------------VAELPDHTDPIRDISWAPNIGRSYHLLAV  244 (361)
T ss_pred             EEEecCCcceeee--------------------------------------ehhcCCCCCcceeeeeccccCCceeeEEE
Confidence            66533221 1100                                      01111577899999999997777788999


Q ss_pred             eecCCeEEEEEeCCCC----------C--------CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeE
Q psy12911        224 GSVEGRVAIQYVNPAN----------P--------KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTF  285 (356)
Q Consensus       224 ~~~dg~i~i~~~~~~~----------~--------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i  285 (356)
                      ++.|| |+||.+....          +        +.+..+..|..           .|..+.|.-.|..|++.+.||.|
T Consensus       245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-----------~VWrv~wNmtGtiLsStGdDG~V  312 (361)
T KOG2445|consen  245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-----------EVWRVRWNMTGTILSSTGDDGCV  312 (361)
T ss_pred             eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-----------ceEEEEEeeeeeEEeecCCCcee
Confidence            99999 9999987421          1        12223445554           89999999999999999999999


Q ss_pred             EEEEcC
Q psy12911        286 SFWDKD  291 (356)
Q Consensus       286 ~iwd~~  291 (356)
                      |+|...
T Consensus       313 RLWkan  318 (361)
T KOG2445|consen  313 RLWKAN  318 (361)
T ss_pred             eehhhh
Confidence            999854

>KOG1310|consensus

Probab=99.82  E-value=7.9e-19  Score=144.17  Aligned_cols=164  Identities=20%  Similarity=0.269  Sum_probs=128.3

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc--CCCeEEEEcCCC
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID--DGTKVFMAGCDK   98 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg   98 (356)
                      ....+.||++.|+|++|+.+|   .+|++|+.|-.+.|||.-. .+.+...-.+|...|.++.|-|  +.+.+++|..|.
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG---~lL~SGSDD~r~ivWd~~~-~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk  117 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADG---ELLASGSDDTRLIVWDPFE-YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK  117 (758)
T ss_pred             hhhhhccccceecceeecCCC---CEEeecCCcceEEeecchh-cceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence            345688999999999999999   9999999999999999875 2333344568999999999999  566899999999


Q ss_pred             eEEEEEcCCCc----------eee-ecccCCCeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCC-ceEEEeC------
Q psy12911         99 TVKCWDLASNQ----------SMQ-VAQHDAPVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQ-PIMTINL------  159 (356)
Q Consensus        99 ~i~vwd~~~~~----------~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~------  159 (356)
                      .|+++|+...+          ... +..|...|..++..  |++ +.+.++++||+|+-+|++... +-.....      
T Consensus       118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~--p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n  195 (758)
T KOG1310|consen  118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATA--PNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN  195 (758)
T ss_pred             eEEEEecccccccccccCccchhhhhhhhhhhhhheecC--CCCCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence            99999998521          122 56799999999988  776 789999999999999998742 1111111      


Q ss_pred             ------CCeeEEEecCC-CeEEEEecCCeEEEEeCCCC
Q psy12911        160 ------PERCYCADVDY-PLAVVGTAGRGIVLYQLEGK  190 (356)
Q Consensus       160 ------~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~  190 (356)
                            .-.++.+++.. .++++|+.|...++||.+..
T Consensus       196 y~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~  233 (758)
T KOG1310|consen  196 YNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV  233 (758)
T ss_pred             hchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhh
Confidence                  11344555554 48999999999999997543

>KOG0290|consensus

Probab=99.82  E-value=8.8e-18  Score=127.47  Aligned_cols=241  Identities=13%  Similarity=0.180  Sum_probs=173.9

Q ss_pred             CCCCCeeEEEecCCC--CCceEEEEEeCCCeEEEEeccCCCc--eeeeee-----ccCCcceeEEEEcc-CCCeEEEEcC
Q psy12911         27 PPEDSISCMAFSPST--LPQYFLIAGSWDNNVRCWEVEPNGK--TIPKSM-----QGMSEPVLDVAWID-DGTKVFMAGC   96 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~--~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~-----~~~~~~v~~~~~s~-~~~~l~~~~~   96 (356)
                      .|.-+++.+-|.|+.  ..+++||+.+  ..+|+|.+.....  .+...+     ..+..++++..|+. +-++|.+++-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            577899999999986  3456777765  4799999975221  111112     23567999999987 7788999999


Q ss_pred             CCeEEEEEcCCCce----eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEE-EeCC---CeeEEEec
Q psy12911         97 DKTVKCWDLASNQS----MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMT-INLP---ERCYCADV  168 (356)
Q Consensus        97 dg~i~vwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~---~~~~~~~~  168 (356)
                      |-+..|||++++..    .++..|...|..++|.. ..-+.+++.+.||.||+||++..+--.. ++.+   ...+.+++
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            99999999999743    34889999999999982 2346799999999999999998653322 2222   23455555


Q ss_pred             CC---CeEEEE-ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC----
Q psy12911        169 DY---PLAVVG-TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP----  240 (356)
Q Consensus       169 ~~---~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~----  240 (356)
                      +.   +++++- -....|.+.|++....++.... .|...|..++|.|..   ...+.+++.|..+.+||+.....    
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS---~~hictaGDD~qaliWDl~q~~~~~~~  326 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAWAPHS---SSHICTAGDDCQALIWDLQQMPRENGE  326 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEecCCC---CceeeecCCcceEEEEecccccccCCC
Confidence            44   355554 4457899999998776655544 789999999999985   67899999999999999965432    


Q ss_pred             CCcceeeeecCCCCCCCcccccceEEEEEeCC-CCEEEEEcCCCeEEE
Q psy12911        241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV-HGTLATVGSEGTFSF  287 (356)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~~~l~s~~~dg~i~i  287 (356)
                      .++..+....            .|+.+.|++. +.+++.+.. +++.+
T Consensus       327 dPilay~a~~------------EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  327 DPILAYTAGG------------EVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             Cchhhhhccc------------eeeeeeecccCCCEEEEEec-CeeeE
Confidence            1222222111            6999999975 578877754 34433

>KOG1524|consensus

Probab=99.82  E-value=2.1e-18  Score=141.26  Aligned_cols=257  Identities=15%  Similarity=0.163  Sum_probs=174.3

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-------CCCeEEEEcCCCe
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-------DGTKVFMAGCDKT   99 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~   99 (356)
                      -|...|.|+.|+.+.   ..+.+++.+..+.-|++.+..... ..+.. ..--+.+..-+       ....|+.++.||.
T Consensus        12 r~~e~vc~v~w~~~e---ei~~~~dDh~~~~~~~~~~~s~~~-~~~p~-df~pt~~h~~~rs~~~g~~~d~~~i~s~DGk   86 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNE---EIYFVSDDHQIFKWSDVSRDSVEV-AKLPD-DFVPTDMHLGGRSSGGGKGSDTLLICSNDGR   86 (737)
T ss_pred             ccceeEEeecccccc---eEEEeccCceEEEeecccchhhhh-hhCCc-ccCCccccccccccCCCCCcceEEEEcCCce
Confidence            477788899999886   666666655455555555533222 11111 11111111111       2346888899999


Q ss_pred             EEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe-CCCeeEEEecCC--CeEEEE
Q psy12911        100 VKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN-LPERCYCADVDY--PLAVVG  176 (356)
Q Consensus       100 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~  176 (356)
                      +.+.+-...-......|.+.+.+-.|+  +||.-|+++++||.|++|. ++|....++. ....+.|..+.+  +.++. 
T Consensus        87 f~il~k~~rVE~sv~AH~~A~~~gRW~--~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~-  162 (737)
T KOG1524|consen   87 FVILNKSARVERSISAHAAAISSGRWS--PDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVF-  162 (737)
T ss_pred             EEEecccchhhhhhhhhhhhhhhcccC--CCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEE-
Confidence            999885543333478899999999999  9999999999999999998 5665443333 333455555544  33332 


Q ss_pred             ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG  256 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (356)
                      +..+.+.|=.+..+....+.  ..|.+-|.++.|++.    .+.+++|+.|-..++||--.   ..++.-..|.-     
T Consensus       163 c~g~h~~IKpL~~n~k~i~W--kAHDGiiL~~~W~~~----s~lI~sgGED~kfKvWD~~G---~~Lf~S~~~ey-----  228 (737)
T KOG1524|consen  163 CQGGHISIKPLAANSKIIRW--RAHDGLVLSLSWSTQ----SNIIASGGEDFRFKIWDAQG---ANLFTSAAEEY-----  228 (737)
T ss_pred             ecCCeEEEeecccccceeEE--eccCcEEEEeecCcc----ccceeecCCceeEEeecccC---cccccCChhcc-----
Confidence            34455555555444333222  358899999999999    78999999999999999754   45666666665     


Q ss_pred             CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                            +|++++|.|+ ..++.++.+ ++|+           -+...+.|..++||+||..++.|.+.+
T Consensus       229 ------~ITSva~npd-~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  229 ------AITSVAFNPE-KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             ------ceeeeeeccc-cceeeeeee-eeee-----------cCCCccceEEEEEcCCCceeeccccCc
Confidence                  9999999999 666666543 4441           123467899999999999999998766

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=2.5e-18  Score=148.39  Aligned_cols=232  Identities=13%  Similarity=0.052  Sum_probs=158.8

Q ss_pred             CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC---CeEEEEEcCCCceeeecccCCCeeEEEEEeCC
Q psy12911         53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD---KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAP  129 (356)
Q Consensus        53 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~  129 (356)
                      +..|.+||.+...   .+.+..|...+...+|+|||+.|+.++.+   ..|++||+.+++...+....+....++|+  |
T Consensus       183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS--P  257 (429)
T PRK01742        183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS--P  257 (429)
T ss_pred             eEEEEEECCCCCC---ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC--C
Confidence            4689999987632   24566788899999999999999887653   47999999988754443333445578999  9


Q ss_pred             CCCeEEEEE-CCCeEEE--EeCCCCCceEEEeCCC---eeEEEecCCCeEEEEe-cCCeEEEEeCCCCccccccccCccc
Q psy12911        130 NYTCLMTGS-WDKTLKF--WDLRTPQPIMTINLPE---RCYCADVDYPLAVVGT-AGRGIVLYQLEGKPQEFKKTESPLK  202 (356)
Q Consensus       130 ~~~~l~~~~-~dg~i~i--wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~  202 (356)
                      ||+.|+.+. .+|.+.|  ||+.+++. ..+..+.   ....+++++..++..+ .++...+|+++..........  +.
T Consensus       258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~--~~  334 (429)
T PRK01742        258 DGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG--GR  334 (429)
T ss_pred             CCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec--CC
Confidence            999888764 6776555  56665553 3333222   3466777777666554 578888887754322222221  11


Q ss_pred             ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC
Q psy12911        203 YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE  282 (356)
Q Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d  282 (356)
                      .  ....|+|+    +..++..+.++ +.+||+..+...   .+....            ....+.|+|+|++|+.++.+
T Consensus       335 ~--~~~~~SpD----G~~ia~~~~~~-i~~~Dl~~g~~~---~lt~~~------------~~~~~~~sPdG~~i~~~s~~  392 (429)
T PRK01742        335 G--YSAQISAD----GKTLVMINGDN-VVKQDLTSGSTE---VLSSTF------------LDESPSISPNGIMIIYSSTQ  392 (429)
T ss_pred             C--CCccCCCC----CCEEEEEcCCC-EEEEECCCCCeE---EecCCC------------CCCCceECCCCCEEEEEEcC
Confidence            2  45778999    77887777654 556888655321   111111            23457899999999999999


Q ss_pred             CeEEEEEc--CcceecCCCCCCccceEEEEECCC
Q psy12911        283 GTFSFWDK--DARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       283 g~i~iwd~--~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                      +.+.+|++  .+|+.+..+..|.+.+...+|||-
T Consensus       393 g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        393 GLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            98888875  357778888888888999999985

>KOG0771|consensus

Probab=99.81  E-value=1.4e-18  Score=138.21  Aligned_cols=200  Identities=18%  Similarity=0.257  Sum_probs=146.7

Q ss_pred             eEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee
Q psy12911         33 SCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ  112 (356)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  112 (356)
                      .+++|+++|   ..|++|+.||++|||+...  ...+.....|...|.++.|+|||++|++.+.| ..+||+.+++..+.
T Consensus       148 k~vaf~~~g---s~latgg~dg~lRv~~~Ps--~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDG---SKLATGGTDGTLRVWEWPS--MLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcCCC---CEeeeccccceEEEEecCc--chhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence            789999999   9999999999999999876  34445677899999999999999999999999 89999999996665


Q ss_pred             e---cccCCCeeEEEEEeCCCC-----CeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEE
Q psy12911        113 V---AQHDAPVKTCHWIKAPNY-----TCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVL  184 (356)
Q Consensus       113 ~---~~~~~~v~~~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  184 (356)
                      .   .........+.|+  .++     .+++....-+.|+.||+.                                  +
T Consensus       222 ~~t~~~k~~~~~~cRF~--~d~~~~~l~laa~~~~~~~v~~~~~~----------------------------------~  265 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFS--VDNAQETLRLAASQFPGGGVRLCDIS----------------------------------L  265 (398)
T ss_pred             hcCCcccchhhhhceec--ccCCCceEEEEEecCCCCceeEEEee----------------------------------e
Confidence            3   2344556777887  554     222222233445555542                                  2


Q ss_pred             EeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccce
Q psy12911        185 YQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAV  264 (356)
Q Consensus       185 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  264 (356)
                      |+-. .-.... ........+.+++++++    +++++.|+.||.|.|++...-. .....-+.|..           .|
T Consensus       266 w~~~-~~l~~~-~~~~~~~siSsl~VS~d----Gkf~AlGT~dGsVai~~~~~lq-~~~~vk~aH~~-----------~V  327 (398)
T KOG0771|consen  266 WSGS-NFLRLR-KKIKRFKSISSLAVSDD----GKFLALGTMDGSVAIYDAKSLQ-RLQYVKEAHLG-----------FV  327 (398)
T ss_pred             eccc-cccchh-hhhhccCcceeEEEcCC----CcEEEEeccCCcEEEEEeceee-eeEeehhhhee-----------ee
Confidence            2221 000000 01112357899999999    8999999999999999986542 12233345665           89


Q ss_pred             EEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        265 NGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       265 ~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                      +.+.|+||.+++++.+.|..+.|..+.-
T Consensus       328 T~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  328 TGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999999999999999999888753

>KOG0642|consensus

Probab=99.81  E-value=1.1e-18  Score=143.52  Aligned_cols=244  Identities=16%  Similarity=0.174  Sum_probs=172.1

Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC---------ceeeecccCCCeeEEEEEeCCCCCeEEEEECC
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN---------QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD  140 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  140 (356)
                      .++..|...|++++|.|....|++++.||.+.+|+++..         ....+.+|.++|.|+++.  ++++.+++|+.|
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~--~n~~~~ysgg~D  365 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP--SNGEHCYSGGID  365 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec--CCceEEEeeccC
Confidence            356678899999999999899999999999999999321         123478999999999999  999999999999


Q ss_pred             CeEEEEeCCCC----------CceEEEeCCCe---eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceE
Q psy12911        141 KTLKFWDLRTP----------QPIMTINLPER---CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRC  207 (356)
Q Consensus       141 g~i~iwd~~~~----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~  207 (356)
                      |+|+.|++...          .....+.++..   .+.++...+.|++++.||++++|+....... ........+...+
T Consensus       366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~-~f~~~~e~g~Pls  444 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC-TFGEPKEHGYPLS  444 (577)
T ss_pred             ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc-ccCCccccCCcce
Confidence            99999966422          12334455553   3455556679999999999999998776441 1111112233445


Q ss_pred             EEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEE
Q psy12911        208 IAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSF  287 (356)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~i  287 (356)
                      +.+-...   ....++...-+.-.++++...  ..+..+.....    .+......++.+.++|.+.+.+++..|+.|++
T Consensus       445 vd~~ss~---~a~~~~s~~~~~~~~~~~ev~--s~~~~~~s~~~----~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~  515 (577)
T KOG0642|consen  445 VDRTSSR---PAHSLASFRFGYTSIDDMEVV--SDLLIFESSAS----PGPRRYPQINKVVSHPTADITFTAHEDRSIRF  515 (577)
T ss_pred             Eeeccch---hHhhhhhcccccccchhhhhh--hheeeccccCC----CcccccCccceEEecCCCCeeEecccCCceec
Confidence            5544331   122222222333233333222  11222211111    11111125888999999999999999999999


Q ss_pred             EEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        288 WDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       288 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +|..+++.++...+|...++++++.|+|-+|++++.|.
T Consensus       516 ~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~  553 (577)
T KOG0642|consen  516 FDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG  553 (577)
T ss_pred             ccccccccchheeeccceecceeecCCCceEEeecCCc
Confidence            99999999999999999999999999999999998765

>KOG0303|consensus

Probab=99.81  E-value=5.2e-18  Score=133.83  Aligned_cols=232  Identities=14%  Similarity=0.223  Sum_probs=163.6

Q ss_pred             eEEEEE---eCCCeEEEEeccCCCce--eeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEEEEEcCCCc--------e
Q psy12911         45 YFLIAG---SWDNNVRCWEVEPNGKT--IPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDLASNQ--------S  110 (356)
Q Consensus        45 ~~l~~~---~~dg~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~--------~  110 (356)
                      .+||..   +..|...|.-+...|..  ..-.+.+|.++|..++|+| +...||+||.|.+|.||.+-.+-        .
T Consensus        45 kfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepv  124 (472)
T KOG0303|consen   45 KFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPV  124 (472)
T ss_pred             ceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccce
Confidence            555543   33345555544432321  1124568999999999999 66789999999999999987543        2


Q ss_pred             eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEec--CCCeEEEEecCCeEEEEeCC
Q psy12911        111 MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADV--DYPLAVVGTAGRGIVLYQLE  188 (356)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~  188 (356)
                      +.+.+|...|-.++|+| ...+.|++++.|.+|.+||+.+++.+.++..+..++++++  ++.++++.+.|..|++||.+
T Consensus       125 v~L~gH~rrVg~V~wHP-tA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr  203 (472)
T KOG0303|consen  125 VELYGHQRRVGLVQWHP-TAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR  203 (472)
T ss_pred             EEEeecceeEEEEeecc-cchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCC
Confidence            33789999999999996 4457899999999999999999999999997777666554  56799999999999999999


Q ss_pred             CCccccccccCcccccceEEEeecCCCCCCCeEEEee---cCCeEEEEEeCCCC-CCCcceeeeecCCCCCCCcccccce
Q psy12911        189 GKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS---VEGRVAIQYVNPAN-PKDNFTFKCHRSNGGAGGVQDIYAV  264 (356)
Q Consensus       189 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~dg~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i  264 (356)
                      ++...... ..........+.|..+    +..+.+|.   .+.++.+||-+.-. +-...++....            .|
T Consensus       204 ~~~~v~e~-~~heG~k~~Raifl~~----g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn------------Gv  266 (472)
T KOG0303|consen  204 RGTVVSEG-VAHEGAKPARAIFLAS----GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN------------GV  266 (472)
T ss_pred             CCcEeeec-ccccCCCcceeEEecc----CceeeeccccccccceeccCcccccCcceeEEeccCC------------ce
Confidence            98654443 2122334455666666    55444443   46789999875442 22223333322            35


Q ss_pred             EEEEEeCCCCEEE-EEcCCCeEEEEEcCcce
Q psy12911        265 NGIVFHPVHGTLA-TVGSEGTFSFWDKDART  294 (356)
Q Consensus       265 ~~i~~sp~~~~l~-s~~~dg~i~iwd~~~~~  294 (356)
                      .---|.||..++. +|-.|+.||.|.+....
T Consensus       267 l~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  267 LLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             EEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            5555778877665 55579999999987543

>KOG1963|consensus

Probab=99.80  E-value=1.9e-16  Score=137.13  Aligned_cols=279  Identities=13%  Similarity=0.200  Sum_probs=189.7

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCC---CeEEEEcCCCeE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG---TKVFMAGCDKTV  100 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i  100 (356)
                      .+.|-...-..-.|++|+   ++++... +..|.||...+  ...+..+.+|..+++.+.+.|..   .++++++.||.|
T Consensus        11 ~lgg~n~~~~~avfSnD~---k~l~~~~-~~~V~VyS~~T--g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I   84 (792)
T KOG1963|consen   11 LLGGRNGNKSPAVFSNDA---KFLFLCT-GNFVKVYSTAT--GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTI   84 (792)
T ss_pred             eeccccceecccccccCC---cEEEEee-CCEEEEEecch--HhhhhhcccccCccceeeecCCCccceEEEEEecCccE
Confidence            355555455566789998   7777766 45999999998  34456899999999999998854   367799999999


Q ss_pred             EEEEcCCCceeeecccCCCeeEEEEEeC-CCCCeEE-EEECCCeEE-EEeCCCCCceEEEe-------------CC--Ce
Q psy12911        101 KCWDLASNQSMQVAQHDAPVKTCHWIKA-PNYTCLM-TGSWDKTLK-FWDLRTPQPIMTIN-------------LP--ER  162 (356)
Q Consensus       101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~-~~~~dg~i~-iwd~~~~~~~~~~~-------------~~--~~  162 (356)
                      ++||...+.+++......++..+.+.|. .+...++ .+..|..+. .......+....+.             .+  ..
T Consensus        85 ~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~  164 (792)
T KOG1963|consen   85 RVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPK  164 (792)
T ss_pred             EEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCc
Confidence            9999999998886666666666555321 0111222 222222111 11111111111111             11  12


Q ss_pred             eEEEecCCCeEEEEecCCeEEEEeCCCCc--cccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC--C
Q psy12911        163 CYCADVDYPLAVVGTAGRGIVLYQLEGKP--QEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP--A  238 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~--~  238 (356)
                      ++.....+ .+.....+..+.+|......  .........|...+++.+++|+    +.+++++..||+|.+|.--.  .
T Consensus       165 ~I~~~~~g-e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn----~~~~Aa~d~dGrI~vw~d~~~~~  239 (792)
T KOG1963|consen  165 SIVDNNSG-EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN----ERYLAAGDSDGRILVWRDFGSSD  239 (792)
T ss_pred             cEEEcCCc-eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccc----cceEEEeccCCcEEEEecccccc
Confidence            22222222 34445556778888887743  2222233345566899999999    89999999999999996433  2


Q ss_pred             CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEE
Q psy12911        239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIF  318 (356)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  318 (356)
                      .......+.-|..           .|++++|+++|.+|++|+..|.+.+|.+.+++ .+-+..-.++|..+.+|||+.+.
T Consensus       240 ~~~t~t~lHWH~~-----------~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~  307 (792)
T KOG1963|consen  240 DSETCTLLHWHHD-----------EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLY  307 (792)
T ss_pred             ccccceEEEeccc-----------ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeE
Confidence            2234455666766           89999999999999999999999999999988 45555667899999999999998


Q ss_pred             EEEeccC
Q psy12911        319 AYAVSYD  325 (356)
Q Consensus       319 ~~~s~~d  325 (356)
                      +....|.
T Consensus       308 sl~~~DN  314 (792)
T KOG1963|consen  308 SLVLEDN  314 (792)
T ss_pred             EEEecCc
Confidence            8887754

>KOG4227|consensus

Probab=99.79  E-value=9.2e-18  Score=132.57  Aligned_cols=244  Identities=12%  Similarity=0.112  Sum_probs=178.5

Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC------Cceeeecc--cCCCeeEEEEEeCCCCCeEEEEECCC
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS------NQSMQVAQ--HDAPVKTCHWIKAPNYTCLMTGSWDK  141 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg  141 (356)
                      +.+.+|.+.|.++.|+.++++|++|+.|..+++|++..      .+++.+.+  |.+.|.|++|.  .....+++|+.++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~--~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD--LENRFLYSGERWG  127 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc--cCCeeEecCCCcc
Confidence            45678999999999999999999999999999999863      34555443  66899999999  8889999999999


Q ss_pred             eEEEEeCCCCCceEEEeCCC---eeEEEe--cCCCeEEEEecCCeEEEEeCCCCccccccc-cCcccccceEEEeecCCC
Q psy12911        142 TLKFWDLRTPQPIMTINLPE---RCYCAD--VDYPLAVVGTAGRGIVLYQLEGKPQEFKKT-ESPLKYQNRCIAIFRDKK  215 (356)
Q Consensus       142 ~i~iwd~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~  215 (356)
                      +|...|+++.+.+..+....   .++.++  +..+.+++.+.++.+.+||.+..+.....+ ..........+.|+|.. 
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~-  206 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET-  206 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC-
Confidence            99999999999998887665   455544  445799999999999999999876333222 22334556788888874 


Q ss_pred             CCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee
Q psy12911        216 KQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK  295 (356)
Q Consensus       216 ~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~  295 (356)
                        +.++++.+..+-+.+||.+... ..+....+..++...     .....++.|+|.|..|.+--....-.+||+.+.++
T Consensus       207 --P~Li~~~~~~~G~~~~D~R~~~-~~~~~~~~~~~L~~~-----~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~  278 (609)
T KOG4227|consen  207 --PALILVNSETGGPNVFDRRMQA-RPVYQRSMFKGLPQE-----NTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC  278 (609)
T ss_pred             --ceeEEeccccCCCCceeecccc-chHHhhhccccCccc-----chhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence              7889999999999999997653 233333332221110     01345788999999888877766677889887544


Q ss_pred             c-CCCCCC-------ccceEEEEECCCCCEEEEEeccCCc
Q psy12911        296 L-KPSEAM-------DMSISTCALNHNGQIFAYAVSYDWS  327 (356)
Q Consensus       296 ~-~~~~~~-------~~~v~~~~~s~~~~~l~~~s~~d~~  327 (356)
                      . ..+. |       ...+.+++|--|-. +++| +|+|.
T Consensus       279 ~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tG-SD~~~  315 (609)
T KOG4227|consen  279 FVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATG-SDHWG  315 (609)
T ss_pred             eeEecc-CCCCcceeeeeeeeeeeeccee-eecc-Ccccc
Confidence            3 2222 2       12467888876544 5555 47765

>KOG1517|consensus

Probab=99.79  E-value=2.4e-17  Score=145.31  Aligned_cols=252  Identities=15%  Similarity=0.191  Sum_probs=174.5

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC---ceeeeeec-------cCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG---KTIPKSMQ-------GMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      ...|+.+.+-.+. +..++++|+.||.|+||+-....   .+++....       +..+.=.-+.|.....+|++++.-.
T Consensus      1109 ~t~Vs~l~liNe~-D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQ-DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred             CCccceeeeeccc-chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee
Confidence            4578888876542 23689999999999999854432   22222222       1122224567887667788777789


Q ss_pred             eEEEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC---ceEEEeCCCe---eEEEecCC
Q psy12911         99 TVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ---PIMTINLPER---CYCADVDY  170 (356)
Q Consensus        99 ~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~---~~~~~~~~  170 (356)
                      .|+|||.....+..  ..+....|+++.-.. ..|+.+++|..||.|++||.+...   .+...+.|..   ++.++...
T Consensus      1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~-~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADL-VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred             EEEEEecccceeEeecccCCCccceeecccc-cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec
Confidence            99999999887766  344556677776653 457999999999999999998753   3455554432   44444433


Q ss_pred             ---CeEEEEecCCeEEEEeCCCCc-cccccccCcc--cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911        171 ---PLAVVGTAGRGIVLYQLEGKP-QEFKKTESPL--KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF  244 (356)
Q Consensus       171 ---~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  244 (356)
                         ..+++|+.+|.|++||++... .....+....  +...+++..++.    ...+++|+. +.|+||++......   
T Consensus      1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h----apiiAsGs~-q~ikIy~~~G~~l~--- 1338 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH----APIIASGSA-QLIKIYSLSGEQLN--- 1338 (1387)
T ss_pred             CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC----CCeeeecCc-ceEEEEecChhhhc---
Confidence               369999999999999999842 2222222222  235899999998    778898888 99999999765432   


Q ss_pred             eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911        245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART  294 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~  294 (356)
                      .++.+...    ..+....+.|++|||..-++|+|+.|.+|.||.....+
T Consensus      1339 ~~k~n~~F----~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1339 IIKYNPGF----MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ccccCccc----ccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            22222211    11122368999999999999999999999999877543

>KOG1445|consensus

Probab=99.79  E-value=2.3e-18  Score=143.88  Aligned_cols=202  Identities=18%  Similarity=0.218  Sum_probs=149.3

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-----ceeeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEE
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-----KTIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVK  101 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~  101 (356)
                      ....|+.+.|.|..  ...||+++.||.|++|.+..++     ......+..|...|+++.|+| ..+.|+++++|-+|+
T Consensus       626 Ngt~vtDl~WdPFD--~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~  703 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFD--DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIE  703 (1012)
T ss_pred             cCceeeecccCCCC--hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceee
Confidence            35679999999976  5899999999999999998755     344567889999999999999 556899999999999


Q ss_pred             EEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC-ceEEEeCCC----eeEEEecCCCeEEE
Q psy12911        102 CWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ-PIMTINLPE----RCYCADVDYPLAVV  175 (356)
Q Consensus       102 vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~  175 (356)
                      +||+.+++... +.+|.+.|.+++|+  |+|+.+++.+.||+|++|+.++++ +++.-+++.    .-+.+..++.++++
T Consensus       704 lWDl~~~~~~~~l~gHtdqIf~~AWS--pdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv  781 (1012)
T KOG1445|consen  704 LWDLANAKLYSRLVGHTDQIFGIAWS--PDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIV  781 (1012)
T ss_pred             eeehhhhhhhheeccCcCceeEEEEC--CCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEE
Confidence            99999987765 89999999999999  999999999999999999998764 454444332    24556666776666


Q ss_pred             Eec----CCeEEEEeCCCCccccccccCcccccceEEEee---cCCC-CCCCeEEEeecCCeEEEEEeCCCC
Q psy12911        176 GTA----GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIF---RDKK-KQPAGYGLGSVEGRVAIQYVNPAN  239 (356)
Q Consensus       176 ~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~-~~~~~~~~~~~dg~i~i~~~~~~~  239 (356)
                      .+-    ...|.+||..+-...      +....+..++-+   |... ..+.++++|-.|..|.+|.+-...
T Consensus       782 ~Gfdk~SeRQv~~Y~Aq~l~~~------pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  782 VGFDKSSERQVQMYDAQTLDLR------PLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             ecccccchhhhhhhhhhhccCC------cceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence            554    357778876653210      011111111111   1111 125678888899999999886543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=5.9e-17  Score=139.97  Aligned_cols=222  Identities=13%  Similarity=0.125  Sum_probs=154.8

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCC---CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-CCC
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWD---NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDK   98 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg   98 (356)
                      +.+..|...|.+.+|+|+|   +.|+..+.+   ..|++||+.++....+..+.+|   ...++|+|||+.|+.++ .+|
T Consensus       197 ~~lt~~~~~v~~p~wSPDG---~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g  270 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDG---SKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDG  270 (429)
T ss_pred             eEeccCCCccccceEcCCC---CEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCC
Confidence            4466788899999999999   888887643   4799999987443333444443   44689999999888765 577


Q ss_pred             eEE--EEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCC-CceEEEeCCCeeEEEecCCCeEE
Q psy12911         99 TVK--CWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTP-QPIMTINLPERCYCADVDYPLAV  174 (356)
Q Consensus        99 ~i~--vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~  174 (356)
                      .+.  +||+.+++...+..+...+....|+  |||+.|+.++ .+|...||++... .....+........+++++..++
T Consensus       271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wS--pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia  348 (429)
T PRK01742        271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWS--PDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLV  348 (429)
T ss_pred             cEEEEEEECCCCCeEeeccCCCCcCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEE
Confidence            655  4577777776677777788899999  9999777655 5788888876542 22233322222345677778887


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                      +.+.++ +.+||+.++...... . .  .......|+|+    +..++.++.++...+|.+..........+..|..   
T Consensus       349 ~~~~~~-i~~~Dl~~g~~~~lt-~-~--~~~~~~~~sPd----G~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g---  416 (429)
T PRK01742        349 MINGDN-VVKQDLTSGSTEVLS-S-T--FLDESPSISPN----GIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG---  416 (429)
T ss_pred             EEcCCC-EEEEECCCCCeEEec-C-C--CCCCCceECCC----CCEEEEEEcCCCceEEEEEECCCCceEEccCCCC---
Confidence            777654 566999876532211 1 1  12356789999    8899999999988888775444466777776665   


Q ss_pred             CCCcccccceEEEEEeCC
Q psy12911        255 AGGVQDIYAVNGIVFHPV  272 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~  272 (356)
                              .+...+|||-
T Consensus       417 --------~~~~p~wsp~  426 (429)
T PRK01742        417 --------QVKFPAWSPY  426 (429)
T ss_pred             --------CCCCcccCCC
Confidence                    6788899884

>KOG2111|consensus

Probab=99.78  E-value=3.6e-16  Score=120.30  Aligned_cols=227  Identities=15%  Similarity=0.179  Sum_probs=160.7

Q ss_pred             ceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCC--CeeEEEEEeCCCCCeE-EEEECC------CeEEEEe
Q psy12911         78 PVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDA--PVKTCHWIKAPNYTCL-MTGSWD------KTLKFWD  147 (356)
Q Consensus        78 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~--~v~~~~~~~~~~~~~l-~~~~~d------g~i~iwd  147 (356)
                      ...+++|+.|...+++|..+| .+||+.+.-+... ...+.+  .+.-+-|   . .+++ +.|+.+      ..|.|||
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf---R-~N~laLVGGg~~pky~pNkviIWD   81 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF---R-SNYLALVGGGSRPKYPPNKVIIWD   81 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh---h-hceEEEecCCCCCCCCCceEEEEe
Confidence            345599999998888887665 8999987533221 111222  2222222   1 2333 334333      4799999


Q ss_pred             CCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcc-cccceEEEeecCCCCCCCeEEE-ee
Q psy12911        148 LRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPL-KYQNRCIAIFRDKKKQPAGYGL-GS  225 (356)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~-~~  225 (356)
                      -...+++.++.....+..+....+.+++.. .+.|.+|....+......+.... .....+++-..+    ...|+. |-
T Consensus        82 D~k~~~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~----k~~LafPg~  156 (346)
T KOG2111|consen   82 DLKERCIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN----KSLLAFPGF  156 (346)
T ss_pred             cccCcEEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCC----ceEEEcCCC
Confidence            777889999999999988888888777665 47899999987655444443222 122222222222    233333 44


Q ss_pred             cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCe-EEEEEcCcceecCCCCCC--
Q psy12911        226 VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGT-FSFWDKDARTKLKPSEAM--  302 (356)
Q Consensus       226 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~--  302 (356)
                      .-|.|+|-|+..........+.+|..           .|.|++.+-+|.++||++..|+ |||||..+|+++.+++.-  
T Consensus       157 k~GqvQi~dL~~~~~~~p~~I~AH~s-----------~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d  225 (346)
T KOG2111|consen  157 KTGQVQIVDLASTKPNAPSIINAHDS-----------DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD  225 (346)
T ss_pred             ccceEEEEEhhhcCcCCceEEEcccC-----------ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc
Confidence            67999999998765545678899998           8999999999999999999997 799999999999988732  


Q ss_pred             ccceEEEEECCCCCEEEEEeccC
Q psy12911        303 DMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       303 ~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ...|.+++|||++.+||++|.-+
T Consensus       226 ~A~iy~iaFSp~~s~LavsSdKg  248 (346)
T KOG2111|consen  226 RADIYCIAFSPNSSWLAVSSDKG  248 (346)
T ss_pred             hheEEEEEeCCCccEEEEEcCCC
Confidence            45899999999999999998655

>KOG2111|consensus

Probab=99.77  E-value=2.1e-15  Score=116.16  Aligned_cols=236  Identities=11%  Similarity=0.167  Sum_probs=164.5

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE-EcCC------CeEEEE
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM-AGCD------KTVKCW  103 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d------g~i~vw  103 (356)
                      ...+++|+.|.   .-+++|..+| .+||+++.-.+...+....-.-.+..+-|  ..++|+- |+.+      +.|.||
T Consensus         7 ~~lsvs~NQD~---ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW   80 (346)
T KOG2111|consen    7 KTLSVSFNQDH---SCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW   80 (346)
T ss_pred             ceeEEEEccCC---ceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence            34459999998   7888887654 99999987332222222211122333333  2345543 3332      579999


Q ss_pred             EcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC-CCCceEEEeC---CCeeEEEecCCC--eEEE-E
Q psy12911        104 DLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR-TPQPIMTINL---PERCYCADVDYP--LAVV-G  176 (356)
Q Consensus       104 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~---~~~~~~~~~~~~--~~~~-~  176 (356)
                      |-...+++.......+|.++.+.  .+  .|++.- ++.|++|... +.+.++.+..   +....++.+..+  .|+. |
T Consensus        81 DD~k~~~i~el~f~~~I~~V~l~--r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg  155 (346)
T KOG2111|consen   81 DDLKERCIIELSFNSEIKAVKLR--RD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG  155 (346)
T ss_pred             ecccCcEEEEEEeccceeeEEEc--CC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC
Confidence            97777777777889999999987  44  455544 5789999987 4466666553   444555555544  3333 4


Q ss_pred             ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCe-EEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGR-VAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      ..-|.|.+-|+.............|...|.|++.+.+    |..+|+++..|+ |+|||...+  ..+.++.-....   
T Consensus       156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~----Gt~vATaStkGTLIRIFdt~~g--~~l~E~RRG~d~---  226 (346)
T KOG2111|consen  156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ----GTLVATASTKGTLIRIFDTEDG--TLLQELRRGVDR---  226 (346)
T ss_pred             CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC----ccEEEEeccCcEEEEEEEcCCC--cEeeeeecCCch---
Confidence            4569999999987654333444578999999999999    899999999998 699998777  456655432221   


Q ss_pred             CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                            ..|.+++|||+..+||++|+.|+|+|+.++.
T Consensus       227 ------A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  227 ------ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             ------heEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence                  1699999999999999999999999998865

>KOG2110|consensus

Probab=99.77  E-value=7.1e-16  Score=120.98  Aligned_cols=234  Identities=13%  Similarity=0.163  Sum_probs=172.3

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC--CeEEEEEcC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD--KTVKCWDLA  106 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~vwd~~  106 (356)
                      ...+..+.|+.+.   ..|..|+.|| .++|..+..++.  .........|..+-|+.  .++|..+.+  ..+++.+++
T Consensus         5 ~~ti~~~~~Nqd~---~~lsvGs~~G-yk~~~~~~~~k~--~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~K   76 (391)
T KOG2110|consen    5 KPTINFIGFNQDS---TLLSVGSKDG-YKIFSCSPFEKC--FSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFK   76 (391)
T ss_pred             Ccceeeeeeccce---eEEEccCCCc-eeEEecCchHHh--hcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcc
Confidence            4567778899998   8888899887 788888764331  12222334566666764  466655544  459999999


Q ss_pred             CCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC----CeeEEEecCCC--eEEEE--ec
Q psy12911        107 SNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP----ERCYCADVDYP--LAVVG--TA  178 (356)
Q Consensus       107 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~--~~  178 (356)
                      .+..+.......+|.++.++    .+.|+++-++ .|+|||+++.+.+.++...    ....+++++..  +++.-  ..
T Consensus        77 k~~~ICe~~fpt~IL~VrmN----r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t  151 (391)
T KOG2110|consen   77 KKTTICEIFFPTSILAVRMN----RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT  151 (391)
T ss_pred             cCceEEEEecCCceEEEEEc----cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence            88888877778899999986    3456655544 4999999999999888743    23566666654  55543  33


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCe-EEEEEeCCCCCCCcceeeeecCCCCCCC
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGR-VAIQYVNPANPKDNFTFKCHRSNGGAGG  257 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~  257 (356)
                      .|.|.+||..+-..... + ..|++.+.+++|+++    |.++|+++..|+ |+|+.+..+  +.+++|+-....     
T Consensus       152 ~GdV~l~d~~nl~~v~~-I-~aH~~~lAalafs~~----G~llATASeKGTVIRVf~v~~G--~kl~eFRRG~~~-----  218 (391)
T KOG2110|consen  152 SGDVVLFDTINLQPVNT-I-NAHKGPLAALAFSPD----GTLLATASEKGTVIRVFSVPEG--QKLYEFRRGTYP-----  218 (391)
T ss_pred             CceEEEEEcccceeeeE-E-EecCCceeEEEECCC----CCEEEEeccCceEEEEEEcCCc--cEeeeeeCCcee-----
Confidence            59999999987643322 2 278999999999999    899999999998 588888665  556666533221     


Q ss_pred             cccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       258 ~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                          ..|.+++|+|++++|++.+..++|+||.++.
T Consensus       219 ----~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  219 ----VSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             ----eEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence                1699999999999999999999999998864

>KOG1240|consensus

Probab=99.77  E-value=1.4e-16  Score=142.50  Aligned_cols=269  Identities=15%  Similarity=0.141  Sum_probs=182.9

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc-----eeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK-----TIPKSMQGMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      .+..+..|+..|..++.++..  ..++++||.||+|++|++..-..     ....++......+.++...+.++.+|.++
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~--~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEH--TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             EeehhhhccccccceeecCCC--CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            455677899999999988765  48999999999999999865211     12223333567899999999999999999


Q ss_pred             CCCeEEEEEcCCCc--e-----eee--cccCCCeeEE-EEEeCCCCC-eEEEEECCCeEEEEeCCCCCceEEEeCCC---
Q psy12911         96 CDKTVKCWDLASNQ--S-----MQV--AQHDAPVKTC-HWIKAPNYT-CLMTGSWDKTLKFWDLRTPQPIMTINLPE---  161 (356)
Q Consensus        96 ~dg~i~vwd~~~~~--~-----~~~--~~~~~~v~~~-~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---  161 (356)
                      .||.|.+.+++..+  .     .+.  ....+.+.++ +|.. ..+. .++.+..-+.|..||+++...+.+++...   
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~-~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA-IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccc-cccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            99999999987621  1     111  1123334333 3332 2333 78888888999999999887766665432   


Q ss_pred             --eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCC
Q psy12911        162 --RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPA  238 (356)
Q Consensus       162 --~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~  238 (356)
                        ..+++++.+..++.|+..|.+.+||++-+... .....+...+++.+..+|-.......+.++. ..+.+.+|++..+
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i-~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI-LSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCcee-ecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence              46778888899999999999999999987433 3334456688888888887543333444444 6788999999776


Q ss_pred             CCCCcceeeeecCCCCC--------CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee
Q psy12911        239 NPKDNFTFKCHRSNGGA--------GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK  295 (356)
Q Consensus       239 ~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~  295 (356)
                      .  ...++.........        ...+..-......+...+.++.+|+.|..|+.||....+.
T Consensus      1276 ~--~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1276 L--RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             c--ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            3  33333332111110        0001111233344444568999999999999999876543

>KOG1272|consensus

Probab=99.76  E-value=4.9e-18  Score=136.72  Aligned_cols=267  Identities=13%  Similarity=0.125  Sum_probs=201.7

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  108 (356)
                      .-.-..+.|+.+|   .+|+.|+..|-|..+|..+  ..+...+. -...|.++.|..+.+++|++- ...+.|||-..-
T Consensus       129 eFGPY~~~ytrnG---rhlllgGrKGHlAa~Dw~t--~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~Gt  201 (545)
T KOG1272|consen  129 EFGPYHLDYTRNG---RHLLLGGRKGHLAAFDWVT--KKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGT  201 (545)
T ss_pred             ccCCeeeeecCCc---cEEEecCCccceeeeeccc--ceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCc
Confidence            3445688999999   9999999999999999988  34434443 457899999999888888775 578999996654


Q ss_pred             ceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEecCCCeEEEEecCCeEEEE
Q psy12911        109 QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCADVDYPLAVVGTAGRGIVLY  185 (356)
Q Consensus       109 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~i~i~  185 (356)
                      ++.++ .....|..+.|.  |..-+|++++..|.++.-|+.+|+.+..+....   .+++-.+.+..+-+|...|+|.+|
T Consensus       202 ElHCl-k~~~~v~rLeFL--PyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW  278 (545)
T KOG1272|consen  202 ELHCL-KRHIRVARLEFL--PYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW  278 (545)
T ss_pred             EEeeh-hhcCchhhhccc--chhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEec
Confidence            44444 445688999999  888889999999999999999999888776443   456666667788899999999999


Q ss_pred             eCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceE
Q psy12911        186 QLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVN  265 (356)
Q Consensus       186 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  265 (356)
                      .........+..  .|.++|.++++.+.    |.++++.+.|..++|||++..  ..+.++.. ..           +..
T Consensus       279 SP~skePLvKiL--cH~g~V~siAv~~~----G~YMaTtG~Dr~~kIWDlR~~--~ql~t~~t-p~-----------~a~  338 (545)
T KOG1272|consen  279 SPNSKEPLVKIL--CHRGPVSSIAVDRG----GRYMATTGLDRKVKIWDLRNF--YQLHTYRT-PH-----------PAS  338 (545)
T ss_pred             CCCCcchHHHHH--hcCCCcceEEECCC----CcEEeecccccceeEeeeccc--cccceeec-CC-----------Ccc
Confidence            998876655554  38899999999999    899999999999999999876  33444433 11           677


Q ss_pred             EEEEeCCCCEEEEEcCCCeEEEEE-cCcc--eecCCCCCC--ccceEEEEECCCCCEEEEEeccCCc
Q psy12911        266 GIVFHPVHGTLATVGSEGTFSFWD-KDAR--TKLKPSEAM--DMSISTCALNHNGQIFAYAVSYDWS  327 (356)
Q Consensus       266 ~i~~sp~~~~l~s~~~dg~i~iwd-~~~~--~~~~~~~~~--~~~v~~~~~s~~~~~l~~~s~~d~~  327 (356)
                      .+++|..| +||.+ ....|.||. .-.+  ..-..+-.|  .++|.++.|.|-...|-.|-.-+|.
T Consensus       339 ~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~t  403 (545)
T KOG1272|consen  339 NLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGIT  403 (545)
T ss_pred             cccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCce
Confidence            88998655 44444 445799995 2221  111222223  4589999999988777777665544

>KOG1524|consensus

Probab=99.76  E-value=1.2e-16  Score=131.20  Aligned_cols=204  Identities=15%  Similarity=0.205  Sum_probs=154.8

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEE
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTC  123 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~  123 (356)
                      +.|+.++.||.+.|.+-..   ...+.+..|.+.+.+-.|+|||.-|++++.||.|++|.- +|.+.. +.....+|+|+
T Consensus        76 d~~~i~s~DGkf~il~k~~---rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSA---RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCA  151 (737)
T ss_pred             ceEEEEcCCceEEEecccc---hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEE
Confidence            6788888999999987544   455778899999999999999999999999999999985 444433 56678899999


Q ss_pred             EEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEEecCC--CeEEEEecCCeEEEEeCCCCccccccccCc
Q psy12911        124 HWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCADVDY--PLAVVGTAGRGIVLYQLEGKPQEFKKTESP  200 (356)
Q Consensus       124 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  200 (356)
                      +|.  |+.+.++.+- .+.+.|=.+.....+-..+.|.. +++++++.  +.+++|+.|-..++||-.+..   ......
T Consensus       152 ~W~--p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~---Lf~S~~  225 (737)
T KOG1524|consen  152 RWA--PNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN---LFTSAA  225 (737)
T ss_pred             EEC--CCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc---cccCCh
Confidence            999  6666665544 36788877777766666666664 66777665  699999999999999987753   233446


Q ss_pred             ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        201 LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       201 ~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                      +..+|++++|.|+     ..++.++.+ .+++-             +...+           .|..++||+||..+++|+
T Consensus       226 ~ey~ITSva~npd-----~~~~v~S~n-t~R~~-------------~p~~G-----------SifnlsWS~DGTQ~a~gt  275 (737)
T KOG1524|consen  226 EEYAITSVAFNPE-----KDYLLWSYN-TARFS-------------SPRVG-----------SIFNLSWSADGTQATCGT  275 (737)
T ss_pred             hccceeeeeeccc-----cceeeeeee-eeeec-------------CCCcc-----------ceEEEEEcCCCceeeccc
Confidence            7899999999998     344444432 22211             01111           799999999999999999


Q ss_pred             CCCeEEEE
Q psy12911        281 SEGTFSFW  288 (356)
Q Consensus       281 ~dg~i~iw  288 (356)
                      ..|.+.+=
T Consensus       276 ~~G~v~~A  283 (737)
T KOG1524|consen  276 STGQLIVA  283 (737)
T ss_pred             cCceEEEe
Confidence            99987653

>KOG2394|consensus

Probab=99.75  E-value=2.5e-16  Score=129.28  Aligned_cols=241  Identities=12%  Similarity=0.084  Sum_probs=158.2

Q ss_pred             eeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC---ceeeeeeccCCcceeEEEE-----ccCCCeEEEEcCCCeEEEE
Q psy12911         32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG---KTIPKSMQGMSEPVLDVAW-----IDDGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        32 V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~vw  103 (356)
                      +....++-.|   ++|+-.- ...+.+|+.....   ..+.+.+. ......|-+|     .+.+--|+.|-.-|.|.+.
T Consensus       126 ~~~~~~~~~g---d~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y-~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~i  200 (636)
T KOG2394|consen  126 VTNTNQSGKG---DRLCFNV-GRELYVYSYRGAADLSKPIDKREY-KGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLI  200 (636)
T ss_pred             eeeccccCCC---CEEEEec-CCeEEEEEccCcchhccchhhhcc-cCCCCceecccccccCCCCcceEEeeccCceEEe
Confidence            3344444444   5554433 2468888887421   11112221 1122333344     3456678888888999999


Q ss_pred             EcCCCceeeecc-----cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEec
Q psy12911        104 DLASNQSMQVAQ-----HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTA  178 (356)
Q Consensus       104 d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (356)
                      |....+..++..     ....|+++.|-| .+...++.+-.+|.+++||....     .............+..+.+...
T Consensus       201 dp~~~~~sklfne~r~i~ktsvT~ikWvp-g~~~~Fl~a~~sGnlyly~~~~~-----~~~t~p~~~~~k~~~~f~i~t~  274 (636)
T KOG2394|consen  201 DPINFEVSKLFNEERLINKSSVTCIKWVP-GSDSLFLVAHASGNLYLYDKEIV-----CGATAPSYQALKDGDQFAILTS  274 (636)
T ss_pred             cchhhHHHHhhhhcccccccceEEEEEEe-CCCceEEEEEecCceEEeecccc-----ccCCCCcccccCCCCeeEEeee
Confidence            987644433222     347899999996 44456777788999999986211     0011111222222232222211


Q ss_pred             -----CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911        179 -----GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG  253 (356)
Q Consensus       179 -----d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  253 (356)
                           ++-+.-|-+             -...|...+|+||    +.+||+.+.||.++||+++..  +.+..++..-+  
T Consensus       275 ksk~~rNPv~~w~~-------------~~g~in~f~FS~D----G~~LA~VSqDGfLRvF~fdt~--eLlg~mkSYFG--  333 (636)
T KOG2394|consen  275 KSKKTRNPVARWHI-------------GEGSINEFAFSPD----GKYLATVSQDGFLRIFDFDTQ--ELLGVMKSYFG--  333 (636)
T ss_pred             eccccCCccceeEe-------------ccccccceeEcCC----CceEEEEecCceEEEeeccHH--HHHHHHHhhcc--
Confidence                 122222222             2347899999999    899999999999999999876  34444444433  


Q ss_pred             CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECC
Q psy12911        254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNH  313 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  313 (356)
                               ...|++|||||+||++|++|-.|.||.+..++.+..=++|..+|+.|+|.|
T Consensus       334 ---------GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  334 ---------GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ---------ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence                     799999999999999999999999999999999999999999999999997

>KOG1272|consensus

Probab=99.75  E-value=4.9e-18  Score=136.70  Aligned_cols=223  Identities=14%  Similarity=0.144  Sum_probs=181.1

Q ss_pred             CcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceE
Q psy12911         76 SEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIM  155 (356)
Q Consensus        76 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  155 (356)
                      ...-..+.++.+|++|+.|+..|.|..+|..++++.....-...|.++.|.  .+.++++++ ....++||| ..|..+.
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~L--Hneq~~AVA-QK~y~yvYD-~~GtElH  204 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFL--HNEQFFAVA-QKKYVYVYD-NNGTELH  204 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhh--cchHHHHhh-hhceEEEec-CCCcEEe
Confidence            345578899999999999999999999999999998877788899999998  776777665 467899999 6788888


Q ss_pred             EEeCCCeeEEEecCCC--eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEE
Q psy12911        156 TINLPERCYCADVDYP--LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQ  233 (356)
Q Consensus       156 ~~~~~~~~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~  233 (356)
                      .+..+..+..+.+-..  +|++++..|.++--|+..+.......  .-.+.+..+.-+|-    ...+-+|...|+|.+|
T Consensus       205 Clk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~--t~~G~~~vm~qNP~----NaVih~GhsnGtVSlW  278 (545)
T KOG1272|consen  205 CLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR--TGAGRTDVMKQNPY----NAVIHLGHSNGTVSLW  278 (545)
T ss_pred             ehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHH--ccCCccchhhcCCc----cceEEEcCCCceEEec
Confidence            8888887777666553  67778888999999999886432222  23456677777887    6789999999999999


Q ss_pred             EeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECC
Q psy12911        234 YVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNH  313 (356)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  313 (356)
                      .-...  .++..+-+|.+           +|.+|++.++|+|+||.+.|..++|||++.-..+.++.. .-+...++||.
T Consensus       279 SP~sk--ePLvKiLcH~g-----------~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq  344 (545)
T KOG1272|consen  279 SPNSK--EPLVKILCHRG-----------PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ  344 (545)
T ss_pred             CCCCc--chHHHHHhcCC-----------CcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc
Confidence            88766  67888889998           999999999999999999999999999998776666554 45677889987


Q ss_pred             CCCEEEEEec
Q psy12911        314 NGQIFAYAVS  323 (356)
Q Consensus       314 ~~~~l~~~s~  323 (356)
                      .|- ||.+-+
T Consensus       345 kgl-LA~~~G  353 (545)
T KOG1272|consen  345 KGL-LALSYG  353 (545)
T ss_pred             ccc-eeeecC
Confidence            774 444433

>KOG1523|consensus

Probab=99.75  E-value=1.6e-16  Score=122.30  Aligned_cols=195  Identities=17%  Similarity=0.262  Sum_probs=153.5

Q ss_pred             CCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce---e-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC
Q psy12911         75 MSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS---M-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT  150 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  150 (356)
                      -..+|+|.+|++|...+|.+-....|.||.....+.   . .+..|...|+.+.|+  |..+.|++|+.|..-++|....
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa--p~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA--PKSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeec--CCCCceeEccCCCCccccccCC
Confidence            457999999999999999999999999999987762   2 267899999999999  9999999999999999998743


Q ss_pred             C-CceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCe
Q psy12911        151 P-QPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGR  229 (356)
Q Consensus       151 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~  229 (356)
                      + +-..++.                                       ...++...+++.|+|.    ++.+++|+....
T Consensus        87 ~~~Wkptlv---------------------------------------LlRiNrAAt~V~WsP~----enkFAVgSgar~  123 (361)
T KOG1523|consen   87 GGTWKPTLV---------------------------------------LLRINRAATCVKWSPK----ENKFAVGSGARL  123 (361)
T ss_pred             CCeecccee---------------------------------------EEEeccceeeEeecCc----CceEEeccCccE
Confidence            2 2211111                                       0124567799999999    889999999999


Q ss_pred             EEEEEeCCCCCC--CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC-----c----------
Q psy12911        230 VAIQYVNPANPK--DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD-----A----------  292 (356)
Q Consensus       230 i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~-----~----------  292 (356)
                      |.||.++..+.=  ..+.-+.++.           .|++++|+|++-+|++|+.|+..||+..-     +          
T Consensus       124 isVcy~E~ENdWWVsKhikkPirS-----------tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk  192 (361)
T KOG1523|consen  124 ISVCYYEQENDWWVSKHIKKPIRS-----------TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSK  192 (361)
T ss_pred             EEEEEEecccceehhhhhCCcccc-----------ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccC
Confidence            999998765321  1122233444           79999999999999999999999999632     1          


Q ss_pred             ---ceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        293 ---RTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       293 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                         |+++.++....+.|..+.|+|+|..|+..+.|.
T Consensus       193 ~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds  228 (361)
T KOG1523|consen  193 MPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS  228 (361)
T ss_pred             CcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC
Confidence               234445555578999999999999999998665

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1.6e-15  Score=130.74  Aligned_cols=232  Identities=15%  Similarity=0.045  Sum_probs=154.9

Q ss_pred             eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC---CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCC
Q psy12911         55 NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC---DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNY  131 (356)
Q Consensus        55 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  131 (356)
                      .|.+||.+....   +.+..+...+...+|+|||+.|+..+.   +..|.+|++.+++...+....+.+....|+  |||
T Consensus       180 ~l~~~d~dg~~~---~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~S--PDG  254 (429)
T PRK03629        180 ELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFS--PDG  254 (429)
T ss_pred             eEEEEcCCCCCC---EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEEC--CCC
Confidence            688888875322   334456778999999999999887543   457999999988766655555556678999  999


Q ss_pred             CeEEEE-ECCC--eEEEEeCCCCCceEEEeCCC--eeEEEecCCCeEEEEecC-C--eEEEEeCCCCccccccccCcccc
Q psy12911        132 TCLMTG-SWDK--TLKFWDLRTPQPIMTINLPE--RCYCADVDYPLAVVGTAG-R--GIVLYQLEGKPQEFKKTESPLKY  203 (356)
Q Consensus       132 ~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~  203 (356)
                      +.|+.. +.+|  .|++||+.+++..+......  ....+++++..++..+.+ +  .|.++|+.++...  ... ....
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~--~lt-~~~~  331 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ--RIT-WEGS  331 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE--Eee-cCCC
Confidence            988765 4444  59999998876554443332  345677778877766653 4  4555566654322  111 1223


Q ss_pred             cceEEEeecCCCCCCCeEEEeecC---CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        204 QNRCIAIFRDKKKQPAGYGLGSVE---GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       204 ~i~~~~~~~~~~~~~~~~~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                      ......|+|+    +..++..+.+   ..+.+||++....   ..+....            ......|+|||++|+.++
T Consensus       332 ~~~~~~~SpD----G~~Ia~~~~~~g~~~I~~~dl~~g~~---~~Lt~~~------------~~~~p~~SpDG~~i~~~s  392 (429)
T PRK03629        332 QNQDADVSSD----GKFMVMVSSNGGQQHIAKQDLATGGV---QVLTDTF------------LDETPSIAPNGTMVIYSS  392 (429)
T ss_pred             CccCEEECCC----CCEEEEEEccCCCceEEEEECCCCCe---EEeCCCC------------CCCCceECCCCCEEEEEE
Confidence            4567889999    6777765543   3467777765432   2222111            234578999999999888


Q ss_pred             CCCe---EEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911        281 SEGT---FSFWDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       281 ~dg~---i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                      .++.   +.++++. |+....+.+|.+.+...+|+|-
T Consensus       393 ~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        393 SQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             cCCCceEEEEEECC-CCCeEECccCCCCcCCcccCCC
Confidence            7764   6777874 5666677778888999999973

>KOG1310|consensus

Probab=99.74  E-value=8.5e-17  Score=132.42  Aligned_cols=221  Identities=16%  Similarity=0.164  Sum_probs=151.9

Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEe
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD  147 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd  147 (356)
                      ..+.||.+.|+++.|+.+|.+|++|+.|-.+.|||.-..+++.  -.+|...|.++.|-|..+.+++++|..|..|+++|
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            5788999999999999999999999999999999998877776  56899999999999877889999999999999999


Q ss_pred             CCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC
Q psy12911        148 LRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE  227 (356)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d  227 (356)
                      +...+.-..-.+.                  .-+++.|             .-|...+..++..|+.   +..+.+++.|
T Consensus       124 l~~~~~~~~d~~~------------------~~~~~~~-------------~cht~rVKria~~p~~---PhtfwsasED  169 (758)
T KOG1310|consen  124 LDSSKEGGMDHGM------------------EETTRCW-------------SCHTDRVKRIATAPNG---PHTFWSASED  169 (758)
T ss_pred             cccccccccccCc------------------cchhhhh-------------hhhhhhhhheecCCCC---CceEEEecCC
Confidence            8753211110000                  0011111             1244566777777774   5889999999


Q ss_pred             CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCc--------ce----
Q psy12911        228 GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDA--------RT----  294 (356)
Q Consensus       228 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~--------~~----  294 (356)
                      |+++-+|++.... +.....++.......  ...-...++..+|.. .+||.|+.|-..++||.+.        +.    
T Consensus       170 GtirQyDiREph~-c~p~~~~~~~l~ny~--~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~  246 (758)
T KOG1310|consen  170 GTIRQYDIREPHV-CNPDEDCPSILVNYN--PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTC  246 (758)
T ss_pred             cceeeecccCCcc-CCccccccHHHHHhc--hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCC
Confidence            9999999976431 111111111000000  000157789999976 7899999999999999421        11    


Q ss_pred             ------ecCCC-CCCc-----------cceEEEEECCCCCEEEEEeccCCc
Q psy12911        295 ------KLKPS-EAMD-----------MSISTCALNHNGQIFAYAVSYDWS  327 (356)
Q Consensus       295 ------~~~~~-~~~~-----------~~v~~~~~s~~~~~l~~~s~~d~~  327 (356)
                            ++..+ .+|.           ..++-+.|+|+|.-|...-+.+..
T Consensus       247 pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhV  297 (758)
T KOG1310|consen  247 PPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHV  297 (758)
T ss_pred             CCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEE
Confidence                  11111 1221           125678999999888777655533

>KOG3881|consensus

Probab=99.74  E-value=6e-16  Score=122.22  Aligned_cols=264  Identities=16%  Similarity=0.146  Sum_probs=184.1

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceee----eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIP----KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  103 (356)
                      -...|.+++|.-++ ....|...+.|..+..+.....+....    .......++|..++.. |+ .|++|-.+|.+.+|
T Consensus        54 ~~~ris~l~~~~d~-~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   54 ELDRISSLLFGVDG-ETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhhheeecCC-ceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEE
Confidence            45678888888665 123444444677788777766432221    1334456777777765 44 67788889999999


Q ss_pred             EcCCC-----ceeeecccCCCeeEEEEEeCCCCCeEEEEECC--CeEEEEeCCCCCceEEEeCCC--------eeEE---
Q psy12911        104 DLASN-----QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD--KTLKFWDLRTPQPIMTINLPE--------RCYC---  165 (356)
Q Consensus       104 d~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~--------~~~~---  165 (356)
                      ..+.+     .++.+.. ...+..+.-++ ....++++|+..  ..+.+||+.+.+.+.+-+...        +++.   
T Consensus       131 ~~k~~d~hss~l~~la~-g~g~~~~r~~~-~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi  208 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLAT-GPGLYDVRQTD-TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI  208 (412)
T ss_pred             eccCCccccccceeeec-CCceeeeccCC-CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence            99844     3333333 35566666652 344566779988  889999998885554433211        1111   


Q ss_pred             -EecC--CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCC
Q psy12911        166 -ADVD--YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKD  242 (356)
Q Consensus       166 -~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~  242 (356)
                       +-..  ...+++++.-+.+++||.+.+..++..+. .....++++...|.    ++.+++|..-+.+..||++... ..
T Consensus       209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~----gn~Iy~gn~~g~l~~FD~r~~k-l~  282 (412)
T KOG3881|consen  209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGLTPS----GNFIYTGNTKGQLAKFDLRGGK-LL  282 (412)
T ss_pred             eecCCCCCceEEEEecceeEEEecCcccCcceeEec-cccCcceeeeecCC----CcEEEEecccchhheecccCce-ee
Confidence             1122  35899999999999999998877766665 34688999999999    8899999999999999998763 12


Q ss_pred             cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911        243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                      ...+.+-.+           .|++|..+|.+++||+++-|..|||+|+++.+++...- -...++++-+.++
T Consensus       283 g~~~kg~tG-----------sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  283 GCGLKGITG-----------SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             ccccCCccC-----------CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence            233566555           89999999999999999999999999999977665432 1334556666444

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.73  E-value=8.8e-15  Score=122.51  Aligned_cols=280  Identities=14%  Similarity=0.061  Sum_probs=168.7

Q ss_pred             eEEE-EEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEE
Q psy12911         45 YFLI-AGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTC  123 (356)
Q Consensus        45 ~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~  123 (356)
                      ++++ +-..++.|.|.|..+  .+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+....-.....++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t--~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGAT--NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGI   83 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCC--CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence            4554 555689999999987  4555666654444455789999999999999999999999999988866666778899


Q ss_pred             EEEeCCCCCeEEEEE-CCCeEEEEeCCCCCceEEEeCCC--------ee--EEEecCCCeE-EEEecCCeEEEEeCCCCc
Q psy12911        124 HWIKAPNYTCLMTGS-WDKTLKFWDLRTPQPIMTINLPE--------RC--YCADVDYPLA-VVGTAGRGIVLYQLEGKP  191 (356)
Q Consensus       124 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~--------~~--~~~~~~~~~~-~~~~~d~~i~i~d~~~~~  191 (356)
                      +++  +||++++++. .++.+.++|.++.+.++.+....        ++  +..+...+.+ +..-..+.|.+.|.....
T Consensus        84 ~~s--~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~  161 (369)
T PF02239_consen   84 AVS--PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK  161 (369)
T ss_dssp             EE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred             EEc--CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence            999  9999988765 68999999999999999887532        22  2233444544 444555899999987653


Q ss_pred             cccccccCcccccceEEEeecCCCCCCCeEEE-eecCCeEEEEEeCCCCCCCcceee-------------eecCC-----
Q psy12911        192 QEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL-GSVEGRVAIQYVNPANPKDNFTFK-------------CHRSN-----  252 (356)
Q Consensus       192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~dg~i~i~~~~~~~~~~~~~~~-------------~~~~~-----  252 (356)
                      .... .............|.|+    ++++++ ...+..+.++|.....  ....+.             .|...     
T Consensus       162 ~~~~-~~i~~g~~~~D~~~dpd----gry~~va~~~sn~i~viD~~~~k--~v~~i~~g~~p~~~~~~~~php~~g~vw~  234 (369)
T PF02239_consen  162 NLKV-TTIKVGRFPHDGGFDPD----GRYFLVAANGSNKIAVIDTKTGK--LVALIDTGKKPHPGPGANFPHPGFGPVWA  234 (369)
T ss_dssp             CEEE-EEEE--TTEEEEEE-TT----SSEEEEEEGGGTEEEEEETTTTE--EEEEEE-SSSBEETTEEEEEETTTEEEEE
T ss_pred             ccce-eeecccccccccccCcc----cceeeecccccceeEEEeeccce--EEEEeeccccccccccccccCCCcceEEe
Confidence            2211 11123345567888888    666555 4556677777765431  111000             01000     


Q ss_pred             --------------CCCC-----C------cccccceEEEEEeCCCCEEEEE----cCCCeEEEEEcCcceecCCCCCCc
Q psy12911        253 --------------GGAG-----G------VQDIYAVNGIVFHPVHGTLATV----GSEGTFSFWDKDARTKLKPSEAMD  303 (356)
Q Consensus       253 --------------~~~~-----~------~~~~~~i~~i~~sp~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~  303 (356)
                                    ....     .      ......-.-+..||+++++.+.    ...++|.++|.++.+.+..+....
T Consensus       235 ~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~  314 (369)
T PF02239_consen  235 TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP  314 (369)
T ss_dssp             EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH
T ss_pred             eccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC
Confidence                          0000     0      0000011456779999999988    455899999999988777765322


Q ss_pred             -cceEEEEECCCCCEEEEEeccCCcCC--CccCCCCCC
Q psy12911        304 -MSISTCALNHNGQIFAYAVSYDWSKG--HEHNNPNKG  338 (356)
Q Consensus       304 -~~v~~~~~s~~~~~l~~~s~~d~~~~--~~~~~~~~~  338 (356)
                       ..+..+.|++||+++..+.   |...  ..++|...-
T Consensus       315 ~~~~~h~ef~~dG~~v~vS~---~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  315 GKRVVHMEFNPDGKEVWVSV---WDGNGAIVVYDAKTL  349 (369)
T ss_dssp             T--EEEEEE-TTSSEEEEEE---E--TTEEEEEETTTT
T ss_pred             CCcEeccEECCCCCEEEEEE---ecCCCEEEEEECCCc
Confidence             2589999999999998876   3333  555665543

...

>KOG0322|consensus

Probab=99.73  E-value=5.3e-16  Score=116.34  Aligned_cols=247  Identities=15%  Similarity=0.143  Sum_probs=165.4

Q ss_pred             CCCCceEEeC-CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC-----CC-
Q psy12911         17 NPNKDFEVVS-PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD-----GT-   89 (356)
Q Consensus        17 ~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~-   89 (356)
                      ...+....++ .|...|+.+.--|++    .|.+-+.|+.+.+|++.....     ...|+-.++++.|.+.     ++ 
T Consensus        43 qt~r~~~~~r~~g~~~it~lq~~p~d----~l~tqgRd~~L~lw~ia~s~~-----i~i~Si~~nslgFCrfSl~~~~k~  113 (323)
T KOG0322|consen   43 QTERDLPLIRLFGRLFITNLQSIPND----SLDTQGRDPLLILWTIAYSAF-----ISIHSIVVNSLGFCRFSLVKKPKN  113 (323)
T ss_pred             ecCccchhhhhhccceeeceeecCCc----chhhcCCCceEEEEEccCcce-----EEEeeeeccccccccceeccCCCc
Confidence            3344445555 577889999988874    688889999999999976322     2234556666666542     11 


Q ss_pred             ---eEEEEcCCC-eEEEEEcCCCceee-----ecccCCCeeEEEEEeCCCC--CeEEEEECCCeEEEEeCCCCCceEEEe
Q psy12911         90 ---KVFMAGCDK-TVKCWDLASNQSMQ-----VAQHDAPVKTCHWIKAPNY--TCLMTGSWDKTLKFWDLRTPQPIMTIN  158 (356)
Q Consensus        90 ---~l~~~~~dg-~i~vwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~  158 (356)
                         .++.-+... .+.+-|......+.     .....+.+.+..+.. .++  -+++.|.++|.+.+||+.++..+..+.
T Consensus       114 ~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~-~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~  192 (323)
T KOG0322|consen  114 SEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH-ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP  192 (323)
T ss_pred             chhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc-cccceEEEEEeccCCeEEEEEccCCceeeccc
Confidence               111111100 01222221111111     123456677766542 233  246778899999999999974443333


Q ss_pred             C-----------CCeeEEEecCC--CeEEEEecCCeEEEEeCCCCc--cccccccCcccccceEEEeecCCCCCCCeEEE
Q psy12911        159 L-----------PERCYCADVDY--PLAVVGTAGRGIVLYQLEGKP--QEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL  223 (356)
Q Consensus       159 ~-----------~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  223 (356)
                      .           ...++.+++..  +.-++++.+..+..|.++...  ..........+..+..+.+-||    ++.+++
T Consensus       193 ~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD----~KIlAT  268 (323)
T KOG0322|consen  193 QSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD----GKILAT  268 (323)
T ss_pred             cccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccC----CcEEee
Confidence            2           22455555543  466788888999999987642  2222222233456788999999    889999


Q ss_pred             eecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        224 GSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       224 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                      ++.|+.|+||.++..  .++..++.|..           .|++++|+|+..++|+++.|++|.+|++
T Consensus       269 AGWD~RiRVyswrtl--~pLAVLkyHsa-----------gvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  269 AGWDHRIRVYSWRTL--NPLAVLKYHSA-----------GVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cccCCcEEEEEeccC--Cchhhhhhhhc-----------ceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999877  67888999987           8999999999999999999999999986

>KOG1240|consensus

Probab=99.72  E-value=1.8e-15  Score=135.64  Aligned_cols=213  Identities=13%  Similarity=0.130  Sum_probs=158.7

Q ss_pred             eeeeeeccCCcceeEEEEccCC-CeEEEEcCCCeEEEEEcCCCce--------eeecccCCCeeEEEEEeCCCCCeEEEE
Q psy12911         67 TIPKSMQGMSEPVLDVAWIDDG-TKVFMAGCDKTVKCWDLASNQS--------MQVAQHDAPVKTCHWIKAPNYTCLMTG  137 (356)
Q Consensus        67 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~l~~~  137 (356)
                      .++..+..|...|..++.++.. .++++||.||+|++|+.+.-..        ..+......+.++.+.  +.++.+|.+
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~--~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC--GNGDQFAVS 1116 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec--cCCCeEEEE
Confidence            5667888899999999998755 8999999999999999864221        1122356788888888  899999999


Q ss_pred             ECCCeEEEEeCCCCC-------ceEEEe--CCCeeEEEecC----C-CeEEEEecCCeEEEEeCCCCccccccccCcccc
Q psy12911        138 SWDKTLKFWDLRTPQ-------PIMTIN--LPERCYCADVD----Y-PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKY  203 (356)
Q Consensus       138 ~~dg~i~iwd~~~~~-------~~~~~~--~~~~~~~~~~~----~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  203 (356)
                      +.||.|++.++...+       ..+..+  ..+.++.+...    . ..++.+..-+.|..||++..............+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            999999999987621       111111  12223333221    1 267888889999999999887666666666778


Q ss_pred             cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC---CEEEEEc
Q psy12911        204 QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH---GTLATVG  280 (356)
Q Consensus       204 ~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~---~~l~s~~  280 (356)
                      .+++++.+|.    +..+++|+..|.+.+||++.+.+...+....+.            +|+.+..+|-.   ...++++
T Consensus      1197 ~vTSi~idp~----~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~------------~i~~v~~~~~~~~~S~~vs~~ 1260 (1431)
T KOG1240|consen 1197 LVTSIVIDPW----CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARA------------PIRHVWLCPTYPQESVSVSAG 1260 (1431)
T ss_pred             ceeEEEecCC----ceEEEEecCCceEEEEEeecCceeecccCcccC------------CcceEEeeccCCCCceEEEec
Confidence            9999999999    789999999999999999988655555555553            67777777643   3444444


Q ss_pred             --CCCeEEEEEcCcceecC
Q psy12911        281 --SEGTFSFWDKDARTKLK  297 (356)
Q Consensus       281 --~dg~i~iwd~~~~~~~~  297 (356)
                        ..+-|.+|++.+|.+..
T Consensus      1261 ~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1261 SSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred             ccCCCceeeeecccCcceE
Confidence              57789999999885433

>KOG2321|consensus

Probab=99.71  E-value=3.4e-15  Score=123.71  Aligned_cols=297  Identities=14%  Similarity=0.178  Sum_probs=200.2

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  106 (356)
                      .|...-+.|..+|||  ..++|+|...-.|++||+..-.....+.+  ....|.-.-.+.|-..++.-..|.+|-+-...
T Consensus        49 e~p~ast~ik~s~DG--qY~lAtG~YKP~ikvydlanLSLKFERhl--Dae~V~feiLsDD~SK~v~L~~DR~IefHak~  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDG--QYLLATGTYKPQIKVYDLANLSLKFERHL--DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY  124 (703)
T ss_pred             CCccccceeEecCCC--cEEEEecccCCceEEEEcccceeeeeecc--cccceeEEEeccchhhheEeecCceeeehhhc
Confidence            467788899999999  45677888899999999977222222222  23445555555565566666677777654322


Q ss_pred             CCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEecCCCeEEEEecCCeEE
Q psy12911        107 SNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCADVDYPLAVVGTAGRGIV  183 (356)
Q Consensus       107 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~i~  183 (356)
                       |.... ..-...-.+++++. +... |++++....|+-++++.|+.+..+....   +++.+.....++++|+.+|.+.
T Consensus       125 -G~hy~-~RIP~~GRDm~y~~-~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE  200 (703)
T KOG2321|consen  125 -GRHYR-TRIPKFGRDMKYHK-PSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE  200 (703)
T ss_pred             -Ceeee-eecCcCCccccccC-CCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEE
Confidence             22111 11223334566652 4444 4444555679999999999888877553   4566666778999999999999


Q ss_pred             EEeCCCCcccccccc----Cccc-----ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        184 LYQLEGKPQEFKKTE----SPLK-----YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       184 i~d~~~~~~~~~~~~----~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                      +||.+..........    ..+.     ..|+++.|..+    +-.+++|+.+|.+.|||++...+  +. .+.|...  
T Consensus       201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~----gL~~aVGts~G~v~iyDLRa~~p--l~-~kdh~~e--  271 (703)
T KOG2321|consen  201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD----GLHVAVGTSTGSVLIYDLRASKP--LL-VKDHGYE--  271 (703)
T ss_pred             EecchhhhhheeeecccccCCCccccccCcceEEEecCC----ceeEEeeccCCcEEEEEcccCCc--ee-ecccCCc--
Confidence            999998643211111    1122     34899999998    88999999999999999998743  22 2223221  


Q ss_pred             CCCcccccceEEEEEeCC--CCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCcc
Q psy12911        255 AGGVQDIYAVNGIVFHPV--HGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEH  332 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~  332 (356)
                             .+|..+.|-+.  +..+++. ....++|||-.+|+....+.. +..++.+|+-|++-++++|-..  .+....
T Consensus       272 -------~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~--~~m~~y  340 (703)
T KOG2321|consen  272 -------LPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANES--SKMHTY  340 (703)
T ss_pred             -------cceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCC--CcceeE
Confidence                   17999999775  3556655 456899999999999888874 4559999999999999998543  344444


Q ss_pred             CCCC----CCceeeecccccccC
Q psy12911        333 NNPN----KGNAIFLRPCFEDMK  351 (356)
Q Consensus       333 ~~~~----~~~~~~~~~~~~~~~  351 (356)
                      |-|.    +.-|-++..+.||+.
T Consensus       341 yiP~LGPaPrWCSfLdnlTEElE  363 (703)
T KOG2321|consen  341 YIPSLGPAPRWCSFLDNLTEELE  363 (703)
T ss_pred             EccccCCCchhhhHHHhHHHHHh
Confidence            4444    445667777776443

>KOG1354|consensus

Probab=99.71  E-value=1.5e-15  Score=118.25  Aligned_cols=261  Identities=15%  Similarity=0.230  Sum_probs=164.9

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc---eeeeeeccCC------------cceeEEEEccCCC--e
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK---TIPKSMQGMS------------EPVLDVAWIDDGT--K   90 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~------------~~v~~~~~s~~~~--~   90 (356)
                      -.+-|.++.|...|   .+||+|..+|.|.++.-+....   .....++.|.            ..|..+.|.++++  .
T Consensus        24 eadiis~vef~~~G---e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~  100 (433)
T KOG1354|consen   24 EADIISAVEFDHYG---ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE  100 (433)
T ss_pred             hhcceeeEEeeccc---ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence            35678999999999   9999999999999998654221   2333444443            4688999988654  5


Q ss_pred             EEEEcCCCeEEEEEcCCCceee-------------------------------------ecccCCCeeEEEEEeCCCCCe
Q psy12911         91 VFMAGCDKTVKCWDLASNQSMQ-------------------------------------VAQHDAPVKTCHWIKAPNYTC  133 (356)
Q Consensus        91 l~~~~~dg~i~vwd~~~~~~~~-------------------------------------~~~~~~~v~~~~~~~~~~~~~  133 (356)
                      ++..+.|.+|++|.+.......                                     -..|+..|+++.++  .|++.
T Consensus       101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N--sD~Et  178 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN--SDKET  178 (433)
T ss_pred             EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec--Cccce
Confidence            6677789999999886432111                                     11355556666666  66665


Q ss_pred             EEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecC
Q psy12911        134 LMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRD  213 (356)
Q Consensus       134 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  213 (356)
                      ++++. |=.|.+|+++-.                           |+...|.|+....      ......-|++..|+|.
T Consensus       179 ~lSAD-dLRINLWnlei~---------------------------d~sFnIVDIKP~n------mEeLteVITsaEFhp~  224 (433)
T KOG1354|consen  179 FLSAD-DLRINLWNLEII---------------------------DQSFNIVDIKPAN------MEELTEVITSAEFHPH  224 (433)
T ss_pred             Eeecc-ceeeeecccccc---------------------------CCceeEEEccccC------HHHHHHHHhhhccCHh
Confidence            55543 455666665421                           2223333333211      0112345788889987


Q ss_pred             CCCCCCeEEEeecCCeEEEEEeCCCCCCC--cceeeeecCCCCCCCc-ccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        214 KKKQPAGYGLGSVEGRVAIQYVNPANPKD--NFTFKCHRSNGGAGGV-QDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       214 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                      +   ...++..+..|.|++.|++....-.  ...+.....+...... .-...|..+.|++.|+|+++-+. -+|++||+
T Consensus       225 ~---cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~  300 (433)
T KOG1354|consen  225 H---CNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDL  300 (433)
T ss_pred             H---ccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEec
Confidence            5   5788899999999999997432100  0011111110000000 11236889999999999998754 48999998


Q ss_pred             C-cceecCCCCCCc------------cce---EEEEECCCCCEEEEEeccCCcCCCccCC
Q psy12911        291 D-ARTKLKPSEAMD------------MSI---STCALNHNGQIFAYAVSYDWSKGHEHNN  334 (356)
Q Consensus       291 ~-~~~~~~~~~~~~------------~~v---~~~~~s~~~~~l~~~s~~d~~~~~~~~~  334 (356)
                      . ..+++.+++.|.            ..|   -.++|+.++.++++|+   +...+.+++
T Consensus       301 nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGs---y~n~frvf~  357 (433)
T KOG1354|consen  301 NMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGS---YNNVFRVFN  357 (433)
T ss_pred             cccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccc---ccceEEEec
Confidence            4 445555555552            122   3689999999999998   566666666

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.1e-14  Score=126.19  Aligned_cols=232  Identities=18%  Similarity=0.123  Sum_probs=152.8

Q ss_pred             CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC---CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCC
Q psy12911         54 NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC---DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPN  130 (356)
Q Consensus        54 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~  130 (356)
                      ..|.+||...  ... +.+..+...+.+.+|+|||+.|+..+.   +..|.+||+.+++...+....+...+..|+  |+
T Consensus       184 ~~l~i~D~~g--~~~-~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~S--pD  258 (433)
T PRK04922        184 YALQVADSDG--YNP-QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFS--PD  258 (433)
T ss_pred             EEEEEECCCC--CCc-eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceEC--CC
Confidence            3688888864  222 345567788999999999999998764   347999999988876665556666688999  99


Q ss_pred             CCeEE-EEECCC--eEEEEeCCCCCceEEEeCC--CeeEEEecCCCeEEEEec-CCe--EEEEeCCCCccccccccCccc
Q psy12911        131 YTCLM-TGSWDK--TLKFWDLRTPQPIMTINLP--ERCYCADVDYPLAVVGTA-GRG--IVLYQLEGKPQEFKKTESPLK  202 (356)
Q Consensus       131 ~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~  202 (356)
                      |+.|+ +.+.+|  .|++||+.+++........  .....+++++..++..+. ++.  |.++|+.++.......   ..
T Consensus       259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~---~g  335 (433)
T PRK04922        259 GRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF---QG  335 (433)
T ss_pred             CCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec---CC
Confidence            98775 445555  5999999887643322221  124567777887776654 444  6666776653221111   12


Q ss_pred             ccceEEEeecCCCCCCCeEEEeecCC---eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE
Q psy12911        203 YQNRCIAIFRDKKKQPAGYGLGSVEG---RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV  279 (356)
Q Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~~dg---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~  279 (356)
                      ......+|+|+    +..++..+.++   .|.+|++......   .+. +..           ......|+|||++|+..
T Consensus       336 ~~~~~~~~SpD----G~~Ia~~~~~~~~~~I~v~d~~~g~~~---~Lt-~~~-----------~~~~p~~spdG~~i~~~  396 (433)
T PRK04922        336 NYNARASVSPD----GKKIAMVHGSGGQYRIAVMDLSTGSVR---TLT-PGS-----------LDESPSFAPNGSMVLYA  396 (433)
T ss_pred             CCccCEEECCC----CCEEEEEECCCCceeEEEEECCCCCeE---ECC-CCC-----------CCCCceECCCCCEEEEE
Confidence            33456899999    77777665433   5788887654322   221 111           23456899999988776


Q ss_pred             cCC---CeEEEEEcCcceecCCCCCCccceEEEEECC
Q psy12911        280 GSE---GTFSFWDKDARTKLKPSEAMDMSISTCALNH  313 (356)
Q Consensus       280 ~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  313 (356)
                      +.+   +.|.++++. +.....+..+.+.+...+|+|
T Consensus       397 s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        397 TREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            653   468888885 444555555667778888887

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.4e-14  Score=123.68  Aligned_cols=231  Identities=14%  Similarity=0.139  Sum_probs=147.8

Q ss_pred             eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC---CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCC
Q psy12911         55 NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD---KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNY  131 (356)
Q Consensus        55 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  131 (356)
                      .|.++|.+.  ... +.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++...+....+.+....|+  |||
T Consensus       177 ~L~~~D~dG--~~~-~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~S--PDG  251 (427)
T PRK02889        177 QLQISDADG--QNA-QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWS--PDG  251 (427)
T ss_pred             EEEEECCCC--CCc-eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEEC--CCC
Confidence            566666543  322 3455677889999999999999877643   46999999998876665555667789999  999


Q ss_pred             CeEE-EEECCCeEEEE--eCCCCCceEEEeCC---CeeEEEecCCCeEEEEec-CCeEEEEeC--CCCccccccccCccc
Q psy12911        132 TCLM-TGSWDKTLKFW--DLRTPQPIMTINLP---ERCYCADVDYPLAVVGTA-GRGIVLYQL--EGKPQEFKKTESPLK  202 (356)
Q Consensus       132 ~~l~-~~~~dg~i~iw--d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-d~~i~i~d~--~~~~~~~~~~~~~~~  202 (356)
                      +.|+ +.+.+|...||  |+..+. ...+..+   .....+++++..++..+. ++...+|.+  .++.......   ..
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~---~g  327 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF---TG  327 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec---CC
Confidence            8876 45677775555  444444 3334322   234567778887766554 455566654  4432211111   12


Q ss_pred             ccceEEEeecCCCCCCCeEEEeecCC---eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE
Q psy12911        203 YQNRCIAIFRDKKKQPAGYGLGSVEG---RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV  279 (356)
Q Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~~dg---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~  279 (356)
                      ......+|+|+    +..++..+.++   .|.+|++.....+   .+... .           ......|+|||++|+.+
T Consensus       328 ~~~~~~~~SpD----G~~Ia~~s~~~g~~~I~v~d~~~g~~~---~lt~~-~-----------~~~~p~~spdg~~l~~~  388 (427)
T PRK02889        328 SYNTSPRISPD----GKLLAYISRVGGAFKLYVQDLATGQVT---ALTDT-T-----------RDESPSFAPNGRYILYA  388 (427)
T ss_pred             CCcCceEECCC----CCEEEEEEccCCcEEEEEEECCCCCeE---EccCC-C-----------CccCceECCCCCEEEEE
Confidence            22346789999    77887776554   5888888665322   22111 1           23567899999988877


Q ss_pred             cCCC---eEEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911        280 GSEG---TFSFWDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       280 ~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                      +.++   .+.+.++ +++....+..+.+.+...+|+|-
T Consensus       389 ~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        389 TQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            6544   3556666 35555556666677788888874

>KOG0644|consensus

Probab=99.68  E-value=8e-17  Score=138.69  Aligned_cols=230  Identities=13%  Similarity=0.160  Sum_probs=175.5

Q ss_pred             eeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEe
Q psy12911         69 PKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD  147 (356)
Q Consensus        69 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd  147 (356)
                      ++.+.+|..+|+|+.|...|.++++|+.|..++||.++++.++. ..+|.+.|+.++.+  .+..++++++.|..|++|.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs--~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVS--SNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccc--hhhhhhhhcccCceEEEEe
Confidence            35677999999999999999999999999999999999998887 89999999999998  8888999999999999999


Q ss_pred             CCCCCceEEEeCCCe-eEEEecCCCeEEEEecCCeEEEEeCCCCccccc--cccCcccccceEEEeecCCCCCCCeEEEe
Q psy12911        148 LRTPQPIMTINLPER-CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFK--KTESPLKYQNRCIAIFRDKKKQPAGYGLG  224 (356)
Q Consensus       148 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  224 (356)
                      +..+.++..+.+|.. +.++.+....  +.+.||++++||.+-......  ......+.-+.++.+-..    +..++++
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~----~~~f~Tg  334 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN----GDRFLTG  334 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeecccc----ccccccc
Confidence            999999999998874 4444444432  778899999999982211111  011112233455555555    6788999


Q ss_pred             ecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCC-CCEEEEEcCCCeEEEEEcCcceecCCCCCCc
Q psy12911        225 SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV-HGTLATVGSEGTFSFWDKDARTKLKPSEAMD  303 (356)
Q Consensus       225 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  303 (356)
                      +.++.-..|.+........                   .+.-+.++.+ ..+.+++-.+-.+.+|++.+|.+++.+.+|.
T Consensus       335 s~d~ea~n~e~~~l~~~~~-------------------~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs  395 (1113)
T KOG0644|consen  335 SRDGEARNHEFEQLAWRSN-------------------LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS  395 (1113)
T ss_pred             cCCcccccchhhHhhhhcc-------------------ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc
Confidence            9999888876643321111                   1112222222 2567777788899999999999999999999


Q ss_pred             cceEEEEECCCCCEEEEEeccC
Q psy12911        304 MSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       304 ~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ..+..+.++|-...++-..++|
T Consensus       396 d~~yvLd~Hpfn~ri~msag~d  417 (1113)
T KOG0644|consen  396 DEVYVLDVHPFNPRIAMSAGYD  417 (1113)
T ss_pred             cceeeeeecCCCcHhhhhccCC
Confidence            9999999999888887766655

>KOG4497|consensus

Probab=99.68  E-value=1.9e-13  Score=106.16  Aligned_cols=274  Identities=11%  Similarity=0.157  Sum_probs=180.5

Q ss_pred             CCeeEEEecCCCCCceEEE-EEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE-EcCCCeEEEEEcCC
Q psy12911         30 DSISCMAFSPSTLPQYFLI-AGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM-AGCDKTVKCWDLAS  107 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~  107 (356)
                      +.|.-+.|..+.   .+++ ....++.|.+|++...+  -...+.....++.+++|||||+.|+. ...+-.|.||.+.+
T Consensus        49 dki~yieW~ads---~~ilC~~yk~~~vqvwsl~Qpe--w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t  123 (447)
T KOG4497|consen   49 DKIVYIEWKADS---CHILCVAYKDPKVQVWSLVQPE--WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT  123 (447)
T ss_pred             HHhhheeeeccc---eeeeeeeeccceEEEEEeecce--eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc
Confidence            567788999887   5544 45778899999998743  33456667789999999999976655 45589999999998


Q ss_pred             CceeeecccCCCeeEEEEEeCCCCCeEEEEECC------------------------------------CeEEEEeCCCC
Q psy12911        108 NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD------------------------------------KTLKFWDLRTP  151 (356)
Q Consensus       108 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------------------------------------g~i~iwd~~~~  151 (356)
                      .+...+.-....+..++|+  ++|++.+.++.-                                    ..+.+||---.
T Consensus       124 ~~~~~~~~pK~~~kg~~f~--~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le  201 (447)
T KOG4497|consen  124 QKGYLLPHPKTNVKGYAFH--PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE  201 (447)
T ss_pred             ceeEEecccccCceeEEEC--CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh
Confidence            8776655555566888888  888877765532                                    12344442222


Q ss_pred             CceEEEeCCC--eeEEEecCCCeEEEEecCCeEEEEeCCCCcc-------------------------------------
Q psy12911        152 QPIMTINLPE--RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQ-------------------------------------  192 (356)
Q Consensus       152 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-------------------------------------  192 (356)
                      -.+..++..-  .....++.++++++|+.|+.+++.+--+-+.                                     
T Consensus       202 ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p  281 (447)
T KOG4497|consen  202 YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP  281 (447)
T ss_pred             heeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCC
Confidence            2222222222  3455666778999999999888754321100                                     


Q ss_pred             ----------------------cccccc-----CcccccceEEEeecCCCCCCCeEEEeecC--CeEEEEEeCCCCCCCc
Q psy12911        193 ----------------------EFKKTE-----SPLKYQNRCIAIFRDKKKQPAGYGLGSVE--GRVAIQYVNPANPKDN  243 (356)
Q Consensus       193 ----------------------~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~d--g~i~i~~~~~~~~~~~  243 (356)
                                            .+....     ......+.-++|++|    ..++++-...  ..+-+||+...  +.-
T Consensus       282 ~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D----s~y~aTrnd~~PnalW~Wdlq~l--~l~  355 (447)
T KOG4497|consen  282 TDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD----STYAATRNDKYPNALWLWDLQNL--KLH  355 (447)
T ss_pred             CccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC----ceEEeeecCCCCceEEEEechhh--hhh
Confidence                                  000000     001234566788888    5555554433  45677777654  222


Q ss_pred             ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        244 FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      ..+. ...           +|....|+|....|+.+.....+++|...-...+..- ...-.|..+.|..+|..++..+.
T Consensus       356 avLi-Qk~-----------piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~k  422 (447)
T KOG4497|consen  356 AVLI-QKH-----------PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGK  422 (447)
T ss_pred             hhhh-hcc-----------ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcC
Confidence            2222 222           7999999999988888877788999998754444433 23357999999999999999998


Q ss_pred             cCCcCC
Q psy12911        324 YDWSKG  329 (356)
Q Consensus       324 ~d~~~~  329 (356)
                      |.+.-.
T Consensus       423 Dafc~a  428 (447)
T KOG4497|consen  423 DAFCVA  428 (447)
T ss_pred             CceEEE
Confidence            876543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=8.8e-14  Score=120.76  Aligned_cols=231  Identities=11%  Similarity=0.037  Sum_probs=151.1

Q ss_pred             eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC---CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCC
Q psy12911         55 NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC---DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNY  131 (356)
Q Consensus        55 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  131 (356)
                      .|.++|.+.  ... +.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++...+..+.+.+...+|+  |||
T Consensus       183 ~l~~~d~dg--~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~S--PDG  257 (435)
T PRK05137        183 RLAIMDQDG--ANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFS--PDG  257 (435)
T ss_pred             EEEEECCCC--CCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEEC--CCC
Confidence            688888754  222 456668889999999999999888764   468999999998877776677788889999  999


Q ss_pred             CeEE-EEECCCe--EEEEeCCCCCceEEEeCC--CeeEEEecCCCeEEEEec-C--CeEEEEeCCCCccccccccCcccc
Q psy12911        132 TCLM-TGSWDKT--LKFWDLRTPQPIMTINLP--ERCYCADVDYPLAVVGTA-G--RGIVLYQLEGKPQEFKKTESPLKY  203 (356)
Q Consensus       132 ~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~  203 (356)
                      +.|+ +.+.++.  |.+||+.+++........  .....+++++..++..+. +  ..|.++|+.++......   ....
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---~~~~  334 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS---FGGG  334 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee---cCCC
Confidence            8775 4555554  788898877653322222  223567778887776654 3  36888888765432111   1234


Q ss_pred             cceEEEeecCCCCCCCeEEEeecC-C--eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        204 QNRCIAIFRDKKKQPAGYGLGSVE-G--RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       204 ~i~~~~~~~~~~~~~~~~~~~~~d-g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                      .+....|+|+    +..++....+ +  .|.+|+.+...   ...+.. ..           .+....|+|||++|+..+
T Consensus       335 ~~~~~~~Spd----G~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~-~~-----------~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        335 RYSTPVWSPR----GDLIAFTKQGGGQFSIGVMKPDGSG---ERILTS-GF-----------LVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             cccCeEECCC----CCEEEEEEcCCCceEEEEEECCCCc---eEeccC-CC-----------CCCCCeECCCCCEEEEEE
Confidence            4566889999    7777776543 2  46666664332   122211 11           356789999999887654


Q ss_pred             CC------CeEEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911        281 SE------GTFSFWDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       281 ~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                      .+      ..|.++|+..+.. ..+. ..+.+...+|+|-
T Consensus       396 ~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        396 QTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSPL  433 (435)
T ss_pred             ccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence            43      3588888875543 3343 2344666777763

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=6.2e-14  Score=120.98  Aligned_cols=216  Identities=15%  Similarity=0.099  Sum_probs=144.7

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEe---CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCC--
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGS---WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDK--   98 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~---~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--   98 (356)
                      +..+...+.+.+|+|||   +.|+..+   .+..|.+|++.++....+..+   .+.+..++|+|||+.|+.. +.+|  
T Consensus       194 lt~~~~~~~~p~wSPDG---~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~---~~~~~~~~~SPDG~~La~~~~~~g~~  267 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDG---SKLAYVTFESGRSALVIQTLANGAVRQVASF---PRHNGAPAFSPDGSKLAFALSKTGSL  267 (429)
T ss_pred             eecCCCceeeeEEcCCC---CEEEEEEecCCCcEEEEEECCCCCeEEccCC---CCCcCCeEECCCCCEEEEEEcCCCCc
Confidence            34466789999999999   8787654   245799999987433332333   3345578999999988865 3344  


Q ss_pred             eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC-C--eEEEEeCCCCCceEEEeCC---CeeEEEecCCCe
Q psy12911         99 TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD-K--TLKFWDLRTPQPIMTINLP---ERCYCADVDYPL  172 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~  172 (356)
                      .|++||+.+++...+..+...+....|+  |||+.|+..+.+ +  .|.++|+.+++.. .+...   .....+++++..
T Consensus       268 ~I~~~d~~tg~~~~lt~~~~~~~~~~wS--PDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~  344 (429)
T PRK03629        268 NLYVMDLASGQIRQVTDGRSNNTEPTWF--PDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKF  344 (429)
T ss_pred             EEEEEECCCCCEEEccCCCCCcCceEEC--CCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCE
Confidence            5999999998887766666678889999  999988777654 3  4555577666443 33222   134567788887


Q ss_pred             EEEEecC---CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCe---EEEEEeCCCCCCCccee
Q psy12911        173 AVVGTAG---RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGR---VAIQYVNPANPKDNFTF  246 (356)
Q Consensus       173 ~~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~---i~i~~~~~~~~~~~~~~  246 (356)
                      ++..+.+   ..|.+||+.++....  +...  .......|+|+    +..++.++.++.   +.+++++.   .....+
T Consensus       345 Ia~~~~~~g~~~I~~~dl~~g~~~~--Lt~~--~~~~~p~~SpD----G~~i~~~s~~~~~~~l~~~~~~G---~~~~~l  413 (429)
T PRK03629        345 MVMVSSNGGQQHIAKQDLATGGVQV--LTDT--FLDETPSIAPN----GTMVIYSSSQGMGSVLNLVSTDG---RFKARL  413 (429)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEE--eCCC--CCCCCceECCC----CCEEEEEEcCCCceEEEEEECCC---CCeEEC
Confidence            7765543   468889998765322  1111  22346789999    788888887765   55555544   334455


Q ss_pred             eeecCCCCCCCcccccceEEEEEeC
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHP  271 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp  271 (356)
                      ..|..           .+...+|+|
T Consensus       414 ~~~~~-----------~~~~p~Wsp  427 (429)
T PRK03629        414 PATDG-----------QVKFPAWSP  427 (429)
T ss_pred             ccCCC-----------CcCCcccCC
Confidence            55554           677788887

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=5e-14  Score=121.67  Aligned_cols=205  Identities=14%  Similarity=0.088  Sum_probs=134.4

Q ss_pred             CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC---CeEEEEeCCCCCceEE--EeCCCeeEEEecCCCe
Q psy12911         98 KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD---KTLKFWDLRTPQPIMT--INLPERCYCADVDYPL  172 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~  172 (356)
                      ..|.++|........+..+...+.+.+|+  |||+.|+..+.+   ..|.+||+.+++....  +........+++++..
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wS--PDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWS--PDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEc--CCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence            46888887655555566778889999999  999998887643   3599999998865433  2233345677788877


Q ss_pred             EEE-EecCCeEEEEeC--CCCccccccccCcccccceEEEeecCCCCCCCeEEEeec-CCeEEEEEeCCCCCCCcceeee
Q psy12911        173 AVV-GTAGRGIVLYQL--EGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV-EGRVAIQYVNPANPKDNFTFKC  248 (356)
Q Consensus       173 ~~~-~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-dg~i~i~~~~~~~~~~~~~~~~  248 (356)
                      ++. .+.++...+|.+  .++.  ..... .+........|+|+    +..++..+. +|...+|.++..... ...+..
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~--~~~lt-~~~~~~~~~~wSpD----G~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~  325 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG--LRRLT-QSSGIDTEPFFSPD----GRSIYFTSDRGGAPQIYRMPASGGA-AQRVTF  325 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC--cEECC-CCCCCCcCeEEcCC----CCEEEEEecCCCCcEEEEEECCCCc-eEEEec
Confidence            764 566777666654  4332  22222 12334567789999    777765554 567777776543222 111111


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC---eEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG---TFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ...           .....+|||||++|+..+.++   .|.+||+.+++.......  .......|+|||++|+.++.++
T Consensus       326 ~g~-----------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        326 TGS-----------YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CCC-----------CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecC
Confidence            111           234578999999998776554   699999988765433222  2346789999999999998654

>KOG2139|consensus

Probab=99.66  E-value=5.9e-14  Score=110.14  Aligned_cols=174  Identities=17%  Similarity=0.154  Sum_probs=124.6

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCC-CeEEEEcCCCeEEEEEcCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG-TKVFMAGCDKTVKCWDLAS  107 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~  107 (356)
                      +-.+..++|++.-   .-+|++..|-.|++|+-...  .....-......|++++|-|.+ +.|+.|+. +-|.+|....
T Consensus        98 ~~dlr~~aWhqH~---~~fava~nddvVriy~ksst--~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~  171 (445)
T KOG2139|consen   98 EIDLRGVAWHQHI---IAFAVATNDDVVRIYDKSST--CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSR  171 (445)
T ss_pred             hcceeeEeechhh---hhhhhhccCcEEEEeccCCC--CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCc
Confidence            4578889999987   78899999999999998762  2212222345689999999955 45666654 5699997653


Q ss_pred             C----c-----------eeeecccCCCeeEEEEEeCCCCCeEEEEEC-CCeEEEEeCCCCCceEEE--eCCC-eeEEEec
Q psy12911        108 N----Q-----------SMQVAQHDAPVKTCHWIKAPNYTCLMTGSW-DKTLKFWDLRTPQPIMTI--NLPE-RCYCADV  168 (356)
Q Consensus       108 ~----~-----------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~--~~~~-~~~~~~~  168 (356)
                      .    .           ..+-.+| .+|++++|.  +||..+++++. |..|+|||..++..+.-.  ..++ ..+-+++
T Consensus       172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn--~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP  248 (445)
T KOG2139|consen  172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWN--EDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP  248 (445)
T ss_pred             ccccccccccccccchhheeCCCC-ceeeEEEEc--CCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence            1    1           1112234 689999999  99999999885 567999999998765544  2222 3677899


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecC
Q psy12911        169 DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRD  213 (356)
Q Consensus       169 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  213 (356)
                      +++.+++++.|+..++|+....-...+...  ..+.+....|+|+
T Consensus       249 dgd~lfaAt~davfrlw~e~q~wt~erw~l--gsgrvqtacWspc  291 (445)
T KOG2139|consen  249 DGDVLFAATCDAVFRLWQENQSWTKERWIL--GSGRVQTACWSPC  291 (445)
T ss_pred             CCCEEEEecccceeeeehhcccceecceec--cCCceeeeeecCC
Confidence            999999999999999996554322222221  2347888899999

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=1.1e-14  Score=110.94  Aligned_cols=145  Identities=19%  Similarity=0.260  Sum_probs=103.1

Q ss_pred             CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe--ecCCeEEEEEeCCCCCCCcceeeeecCCCCCCC
Q psy12911        180 RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG--SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG  257 (356)
Q Consensus       180 ~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  257 (356)
                      +...+|.++........+.....++|.+++|+|+    +..+++.  ..+..+.+||.+.   +.+..+..  .      
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~----g~~favi~g~~~~~v~lyd~~~---~~i~~~~~--~------  101 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN----GNEFAVIYGSMPAKVTLYDVKG---KKIFSFGT--Q------  101 (194)
T ss_pred             eeEEEEEEecCCCccceeeccCCCceEEEEECcC----CCEEEEEEccCCcccEEEcCcc---cEeEeecC--C------
Confidence            4455666655444444444444567999999999    6665544  4677999999962   44555532  2      


Q ss_pred             cccccceEEEEEeCCCCEEEEEcC---CCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc---CCcCCCc
Q psy12911        258 VQDIYAVNGIVFHPVHGTLATVGS---EGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY---DWSKGHE  331 (356)
Q Consensus       258 ~~~~~~i~~i~~sp~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~---d~~~~~~  331 (356)
                           .++.+.|+|+|++|++++.   .|.|.+||+++.+.+...+ | ..++.++|||||++|++++..   .-+.++.
T Consensus       102 -----~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~  174 (194)
T PF08662_consen  102 -----PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFK  174 (194)
T ss_pred             -----CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEE
Confidence                 6889999999999999864   4679999999988888775 3 347899999999999999864   1345666


Q ss_pred             cCCCCCCceeeecccc
Q psy12911        332 HNNPNKGNAIFLRPCF  347 (356)
Q Consensus       332 ~~~~~~~~~~~~~~~~  347 (356)
                      +|+-. +..++-.+++
T Consensus       175 Iw~~~-G~~l~~~~~~  189 (194)
T PF08662_consen  175 IWSFQ-GRLLYKKPFD  189 (194)
T ss_pred             EEEec-CeEeEecchh
Confidence            77764 5555555443

>KOG4497|consensus

Probab=99.65  E-value=6.9e-14  Score=108.48  Aligned_cols=273  Identities=13%  Similarity=0.182  Sum_probs=177.2

Q ss_pred             EEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCCCceee
Q psy12911         34 CMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLASNQSMQ  112 (356)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~  112 (356)
                      -++|||+|   +++|+++.- .+.|=|.++  .++.+.+ ..-..|.-+.|..|..+++.+ ..|+.|.+|++...+...
T Consensus        13 ~c~fSp~g---~yiAs~~~y-rlviRd~~t--lq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c   85 (447)
T KOG4497|consen   13 FCSFSPCG---NYIASLSRY-RLVIRDSET--LQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC   85 (447)
T ss_pred             ceeECCCC---Ceeeeeeee-EEEEeccch--hhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence            46799999   999999865 777888776  3332222 234678889999988776655 558899999999887765


Q ss_pred             -ecccCCCeeEEEEEeCCCCC-eEEEEECCCeEEEEeCCCCCceE--EEeCCCeeEEEecCCCeEEEEec----------
Q psy12911        113 -VAQHDAPVKTCHWIKAPNYT-CLMTGSWDKTLKFWDLRTPQPIM--TINLPERCYCADVDYPLAVVGTA----------  178 (356)
Q Consensus       113 -~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----------  178 (356)
                       ......++.+++|+  |+|+ +|.+...+-.|.+|.+.+.+...  --+.....+++..++++.+..+.          
T Consensus        86 kIdeg~agls~~~WS--PdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~  163 (447)
T KOG4497|consen   86 KIDEGQAGLSSISWS--PDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS  163 (447)
T ss_pred             EeccCCCcceeeeEC--CCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence             66778899999999  9995 55566678899999998765432  22233345556666554433322          


Q ss_pred             --------------------------CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911        179 --------------------------GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI  232 (356)
Q Consensus       179 --------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i  232 (356)
                                                +..+.+||---.   .+...-...-.+..++|+|.    ++.+++|+.|+.+++
T Consensus       164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le---ykv~aYe~~lG~k~v~wsP~----~qflavGsyD~~lrv  236 (447)
T KOG4497|consen  164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE---YKVYAYERGLGLKFVEWSPC----NQFLAVGSYDQMLRV  236 (447)
T ss_pred             hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh---heeeeeeeccceeEEEeccc----cceEEeeccchhhhh
Confidence                                      234455553221   12112223356788999998    789999999998887


Q ss_pred             EEe---CCC----------CCC----------Ccc------------------------------eeeeecCCCCCCCcc
Q psy12911        233 QYV---NPA----------NPK----------DNF------------------------------TFKCHRSNGGAGGVQ  259 (356)
Q Consensus       233 ~~~---~~~----------~~~----------~~~------------------------------~~~~~~~~~~~~~~~  259 (356)
                      .+-   ..-          .+.          .++                              ....|.... ....+
T Consensus       237 lnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp-~tD~p  315 (447)
T KOG4497|consen  237 LNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP-PTDFP  315 (447)
T ss_pred             hceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC-CCCCC
Confidence            542   100          000          000                              000010000 01111


Q ss_pred             c-ccceEEEEEeCCCCEEEEEcCC--CeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        260 D-IYAVNGIVFHPVHGTLATVGSE--GTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       260 ~-~~~i~~i~~sp~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                      + .-.+.-++|++|..++++-.+.  +.+.+||+...+....+. ...+|+...|.|....|+.+.+.
T Consensus       316 nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~  382 (447)
T KOG4497|consen  316 NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGK  382 (447)
T ss_pred             CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCC
Confidence            1 1246779999999999987543  679999999766544443 56789999999998888877653

>KOG2139|consensus

Probab=99.63  E-value=1.8e-12  Score=101.94  Aligned_cols=243  Identities=15%  Similarity=0.202  Sum_probs=157.1

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc------------eeeeeeccCCcceeEEEEccCCCeEEEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK------------TIPKSMQGMSEPVLDVAWIDDGTKVFMA   94 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~   94 (356)
                      .....|+|++|-|.+  ..-|++|+.. -|.+|..+....            ..+..-.+| .+|++++|++||..++++
T Consensus       138 ~sQrnvtclawRPls--aselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tA  213 (445)
T KOG2139|consen  138 VSQRNVTCLAWRPLS--ASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTA  213 (445)
T ss_pred             hhhcceeEEEeccCC--cceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeec
Confidence            346789999999987  5788888865 589998765221            011122344 689999999999999998


Q ss_pred             cC-CCeEEEEEcCCCceeeec-ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-CCceEEEeCCCe--eEEEecC
Q psy12911         95 GC-DKTVKCWDLASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-PQPIMTINLPER--CYCADVD  169 (356)
Q Consensus        95 ~~-dg~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~--~~~~~~~  169 (356)
                      +. |..|.|||..++..+.+. ...+.+.-+.|+  ||+.+|+++.-|+..++|.... ....+-.-+..+  ..+.++.
T Consensus       214 S~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS--Pdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspc  291 (445)
T KOG2139|consen  214 SFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS--PDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPC  291 (445)
T ss_pred             ccCcceEEEEcCCCCCcccccccCCCceeeEEEc--CCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCC
Confidence            87 688999999999988755 556788899999  9999999999999999995433 233333333333  3456667


Q ss_pred             CCeEE-EEecCCeEEEEeCCCCccccc--------------------cccCcccccceEEEeecCCCCCCCeEEEeecCC
Q psy12911        170 YPLAV-VGTAGRGIVLYQLEGKPQEFK--------------------KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG  228 (356)
Q Consensus       170 ~~~~~-~~~~d~~i~i~d~~~~~~~~~--------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg  228 (356)
                      +.+++ +.+....++-...........                    .......+.+.+++|.|.    |.++++.-..+
T Consensus       292 GsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps----GeyLav~fKg~  367 (445)
T KOG2139|consen  292 GSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS----GEYLAVIFKGQ  367 (445)
T ss_pred             CCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCC----CCEEEEEEcCC
Confidence            76444 344444444333332211111                    001112467899999999    78888876554


Q ss_pred             e--------EEEEEeCCCCCCCcceee--eecCCCCCCCcccccceEEEEEeC---CCCEEEEEcCCCeEEEEEcC
Q psy12911        229 R--------VAIQYVNPANPKDNFTFK--CHRSNGGAGGVQDIYAVNGIVFHP---VHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       229 ~--------i~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~sp---~~~~l~s~~~dg~i~iwd~~  291 (356)
                      .        |.+||....   +...+.  +... .+        .-.-|.|+|   ++.+|..+-..|.+.-|++.
T Consensus       368 ~~v~~~k~~i~~fdtr~s---p~vels~cg~i~-ge--------~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  368 SFVLLCKLHISRFDTRKS---PPVELSYCGMIG-GE--------YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             chhhhhhhhhhhhccccc---CceEEEeccccc-CC--------CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            3        455555432   222222  1111 00        233456665   46777777778888887764

>KOG1334|consensus

Probab=99.63  E-value=9.4e-15  Score=118.78  Aligned_cols=248  Identities=13%  Similarity=0.094  Sum_probs=178.5

Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEe
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD  147 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd  147 (356)
                      ..|..|.+.|..|.|+..|..|++|+.|..|.+||...++...  ..+|...|....|.|..+...+++++.||.+++=.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            4677899999999999999999999999999999999887654  56799999999999777788899999999999877


Q ss_pred             CCCCCc------eEEEeCCCeeEEEecCCC-eEEEEecCCeEEEEeCCCCccccccccCccc----ccceEEEeecCCCC
Q psy12911        148 LRTPQP------IMTINLPERCYCADVDYP-LAVVGTAGRGIVLYQLEGKPQEFKKTESPLK----YQNRCIAIFRDKKK  216 (356)
Q Consensus       148 ~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~  216 (356)
                      +.....      +....++...+++.+..+ .+++++.|+.+.-+|++..............    -....++..|..  
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n--  293 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN--  293 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC--
Confidence            654322      222233445566666654 7889999999999999987543333322222    245677888773  


Q ss_pred             CCCeEEEeecCCeEEEEEeCCCCCC----CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC-
Q psy12911        217 QPAGYGLGSVEGRVAIQYVNPANPK----DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD-  291 (356)
Q Consensus       217 ~~~~~~~~~~dg~i~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~-  291 (356)
                       ...+++++.|..+++||.+....+    .+..+..|....     ...-.|++++|+.++.-|.++-.|-.|+++.-. 
T Consensus       294 -t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~-----d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~  367 (559)
T KOG1334|consen  294 -TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE-----DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM  367 (559)
T ss_pred             -ccccccCChhhhhhhhcccchhhccccchhhhcCCccccc-----cCcccceeEEecCCccceeeeecccceEEecccc
Confidence             568999999999999998644322    122222222111     111269999999888777777778889999533 


Q ss_pred             -cc----------eecCC-CCCCcc--ceEEEE-ECCCCCEEEEEeccC
Q psy12911        292 -AR----------TKLKP-SEAMDM--SISTCA-LNHNGQIFAYAVSYD  325 (356)
Q Consensus       292 -~~----------~~~~~-~~~~~~--~v~~~~-~s~~~~~l~~~s~~d  325 (356)
                       .|          ..++. +++|.+  .|..+- |-|...|+++||..+
T Consensus       368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCG  416 (559)
T KOG1334|consen  368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCG  416 (559)
T ss_pred             ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccc
Confidence             22          22233 778855  566775 468999999998655

>KOG1409|consensus

Probab=99.62  E-value=3.4e-14  Score=110.73  Aligned_cols=253  Identities=15%  Similarity=0.233  Sum_probs=196.5

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      ..+..++||.+.|+....-|..   .-+++.+.|.+++||--.+.++.-.........+++++.+.++...|+.|-..|+
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e---~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKE---EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT   91 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCC---CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence            3456688999999999998887   8899999999999998766454332333345678999999999999999999999


Q ss_pred             EEEEEcCC----Cceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEE
Q psy12911        100 VKCWDLAS----NQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAV  174 (356)
Q Consensus       100 i~vwd~~~----~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (356)
                      +.-+.+..    ....+ ...|...+..+.|+  .....+++.+.|..+.---.+.+..+..+.......+...+-...+
T Consensus        92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~--~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~f  169 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFS--LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAF  169 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhhhhcceeeEEec--CCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEE
Confidence            98887653    22233 56799999999999  7778999999998876655666666655544333333333333677


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                      +|...|.|..-.+............++...+.+++|.+.    ...+.+|..|..+.+||+.... .....+.+|..   
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~----~~~LfSg~~d~~vi~wdigg~~-g~~~el~gh~~---  241 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG----QRLLFSGASDHSVIMWDIGGRK-GTAYELQGHND---  241 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC----CcEEEeccccCceEEEeccCCc-ceeeeeccchh---
Confidence            788888888887776665555566678899999999999    7899999999999999997664 34566677766   


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~  293 (356)
                              .|..+..-+.-+.+.+++.||.|.+|+++..
T Consensus       242 --------kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  242 --------KVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             --------hhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence                    7888888777889999999999999998743

>KOG3881|consensus

Probab=99.61  E-value=1.6e-13  Score=108.79  Aligned_cols=235  Identities=11%  Similarity=0.094  Sum_probs=171.8

Q ss_pred             CCcceeEEEEccCCC--eEEEEcCCCeEEEEEcCCCceee-------ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEE
Q psy12911         75 MSEPVLDVAWIDDGT--KVFMAGCDKTVKCWDLASNQSMQ-------VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF  145 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i  145 (356)
                      ....|..++|..+++  .+...+.+..+..+.+....+..       ......+|..++.   .+ ..|++|-.+|.+.+
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~d-g~Litc~~sG~l~~  129 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---AD-GTLITCVSSGNLQV  129 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cC-CEEEEEecCCcEEE
Confidence            456788888877554  44444466777777776655433       2345667777775   34 46788888999999


Q ss_pred             EeCCCCC----ceEEEeCCCeeEEEecC---CCeEEEEecC--CeEEEEeCCCCccccccccCc-------ccccceEEE
Q psy12911        146 WDLRTPQ----PIMTINLPERCYCADVD---YPLAVVGTAG--RGIVLYQLEGKPQEFKKTESP-------LKYQNRCIA  209 (356)
Q Consensus       146 wd~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~-------~~~~i~~~~  209 (356)
                      |..+.+.    .+..+..+.....+...   ...+++|+..  ..+.+||+++..+.+.....+       .+-.++.+.
T Consensus       130 ~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  130 RHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             EeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence            9988542    44444444444443332   2466678888  899999999875443332211       223456777


Q ss_pred             eecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911        210 IFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD  289 (356)
Q Consensus       210 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd  289 (356)
                      |.+...  ...|++++.-+.+++||..... +++..+.....           +++++...|+++++++|..-|.+..||
T Consensus       210 Fl~g~~--~~~fat~T~~hqvR~YDt~~qR-RPV~~fd~~E~-----------~is~~~l~p~gn~Iy~gn~~g~l~~FD  275 (412)
T KOG3881|consen  210 FLEGSP--NYKFATITRYHQVRLYDTRHQR-RPVAQFDFLEN-----------PISSTGLTPSGNFIYTGNTKGQLAKFD  275 (412)
T ss_pred             ecCCCC--CceEEEEecceeEEEecCcccC-cceeEeccccC-----------cceeeeecCCCcEEEEecccchhheec
Confidence            776522  4689999999999999998543 66777666555           899999999999999999999999999


Q ss_pred             cCcceecCC-CCCCccceEEEEECCCCCEEEEEeccCCc
Q psy12911        290 KDARTKLKP-SEAMDMSISTCALNHNGQIFAYAVSYDWS  327 (356)
Q Consensus       290 ~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~s~~d~~  327 (356)
                      ++.++.+.. +++..+.|+++..+|.+++||+++-|-+.
T Consensus       276 ~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyv  314 (412)
T KOG3881|consen  276 LRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYV  314 (412)
T ss_pred             ccCceeeccccCCccCCcceEEEcCCCceEEeeccceeE
Confidence            999998876 88999999999999999999999965543

>KOG2041|consensus

Probab=99.61  E-value=2e-13  Score=116.47  Aligned_cols=275  Identities=13%  Similarity=0.139  Sum_probs=195.2

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-------------ceeeeeeccCCcceeEEEEccCCCeEEEE
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-------------KTIPKSMQGMSEPVLDVAWIDDGTKVFMA   94 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~   94 (356)
                      ......|++|+...   .++|+|+.||.++|..+.+..             ...-+++.||++.|..+.|+.+.+.|-+.
T Consensus        13 nnvkL~c~~WNke~---gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS   89 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKES---GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS   89 (1189)
T ss_pred             CCceEEEEEEcccC---CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence            45578899999998   899999999999999887632             12224678999999999999999999999


Q ss_pred             cCCCeEEEEEcCCCceee---ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce-EEEeCCC-eeEEEecC
Q psy12911         95 GCDKTVKCWDLASNQSMQ---VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI-MTINLPE-RCYCADVD  169 (356)
Q Consensus        95 ~~dg~i~vwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~-~~~~~~~~  169 (356)
                      ..+|.|.||-+-.+....   -....+.|.+++|.  .+|..++...+||.|.+=.+..++.- +.+++.. .-+..+.+
T Consensus        90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn--~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D  167 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN--LDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSED  167 (1189)
T ss_pred             CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc--CCCcEEEEEEccCCEEEEeeccceecchhcchheccceeeccc
Confidence            999999999998887654   23356779999999  99999999999999877665443211 1122111 12334555


Q ss_pred             CCeEEEEecCCeEEEEeCCCCcccccc---------ccCcccccceEEEeecCC----CCCCCeEEEeecCCeEEEEEeC
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKK---------TESPLKYQNRCIAIFRDK----KKQPAGYGLGSVEGRVAIQYVN  236 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~dg~i~i~~~~  236 (356)
                      ...++.+-.+|.+.+||...+-.....         ........+..+.|....    ..+...++++..+|.+.+..-.
T Consensus       168 ~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e  247 (1189)
T KOG2041|consen  168 LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE  247 (1189)
T ss_pred             HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence            567777888899999998765211111         111222335555554221    1125689999999998876443


Q ss_pred             CCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC---------CeEEEEEcCcceecCCCCCCccceE
Q psy12911        237 PANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE---------GTFSFWDKDARTKLKPSEAMDMSIS  307 (356)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~  307 (356)
                      +.. .++..-.+  .           .+..+.|+++|.+||.++.|         +.|.+|..- |+.+.+++.....|+
T Consensus       248 ND~-~Pvv~dtg--m-----------~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It  312 (1189)
T KOG2041|consen  248 NDP-EPVVVDTG--M-----------KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCIT  312 (1189)
T ss_pred             CCC-CCeEEecc--c-----------EeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCceee
Confidence            322 22221112  1           68899999999999998864         356777654 677888888888999


Q ss_pred             EEEECCCCCEEEEEe
Q psy12911        308 TCALNHNGQIFAYAV  322 (356)
Q Consensus       308 ~~~~s~~~~~l~~~s  322 (356)
                      +++|-..|-.+|.+-
T Consensus       313 ~lsWEg~gLriA~Av  327 (1189)
T KOG2041|consen  313 GLSWEGTGLRIAIAV  327 (1189)
T ss_pred             eeEEcCCceEEEEEe
Confidence            999999998888775

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.61  E-value=1.6e-11  Score=100.71  Aligned_cols=271  Identities=11%  Similarity=0.031  Sum_probs=164.7

Q ss_pred             CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC----------CCeEEEEEcCCCceeeeccc-------
Q psy12911         54 NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC----------DKTVKCWDLASNQSMQVAQH-------  116 (356)
Q Consensus        54 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~-------  116 (356)
                      ++|.+.|..+  .+.+..+..-..+- .+ ++||++.|+.+..          +..|.+||..+.+.+.....       
T Consensus        27 ~~v~ViD~~~--~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~  102 (352)
T TIGR02658        27 TQVYTIDGEA--GRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL  102 (352)
T ss_pred             ceEEEEECCC--CEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence            8999999988  34445554322222 34 9999998887765          78999999999988763322       


Q ss_pred             -CCCeeEEEEEeCCCCCeEEEEE-C-CCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccc
Q psy12911        117 -DAPVKTCHWIKAPNYTCLMTGS-W-DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQE  193 (356)
Q Consensus       117 -~~~v~~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  193 (356)
                       ......++++  +||++|+... . +..|.+.|+.+++.+.++..+.....+........+.+.||......+......
T Consensus       103 ~~~~~~~~~ls--~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~  180 (352)
T TIGR02658       103 VGTYPWMTSLT--PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP  180 (352)
T ss_pred             ccCccceEEEC--CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce
Confidence             1223467788  9999988766 3 689999999999999999887654444444444445556666655544432211


Q ss_pred             cccccCc-cc--cc--ceEEEeec-CCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEE
Q psy12911        194 FKKTESP-LK--YQ--NRCIAIFR-DKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGI  267 (356)
Q Consensus       194 ~~~~~~~-~~--~~--i~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  267 (356)
                      ......- +.  ..  .+. .+.+ +    +.++.+... |.|.+.|+..........+..-.......+.. ...+.-+
T Consensus       181 ~~~~~~vf~~~~~~v~~rP-~~~~~d----g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr-P~g~q~i  253 (352)
T TIGR02658       181 KIKPTEVFHPEDEYLINHP-AYSNKS----GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR-PGGWQQV  253 (352)
T ss_pred             EEeeeeeecCCccccccCC-ceEcCC----CcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccC-CCcceeE
Confidence            1000000 00  00  000 3344 4    555655555 99999997554322222221111000000000 0133449


Q ss_pred             EEeCCCCEEEEEc----------CCCeEEEEEcCcceecCCCCCCccceEEEEECCCCC-EEEEEeccCCcCCCccCCCC
Q psy12911        268 VFHPVHGTLATVG----------SEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQ-IFAYAVSYDWSKGHEHNNPN  336 (356)
Q Consensus       268 ~~sp~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~s~~d~~~~~~~~~~~  336 (356)
                      +++|+++.++...          ..+.|.++|..+++.+..+.. ...+..++++||++ +|.++...  .....++|..
T Consensus       254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~--s~~VsViD~~  330 (352)
T TIGR02658       254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTG--DKTLYIFDAE  330 (352)
T ss_pred             EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCC--CCcEEEEECc
Confidence            9999998877742          225799999999999888763 45789999999999 77666532  2334455554


Q ss_pred             CCce
Q psy12911        337 KGNA  340 (356)
Q Consensus       337 ~~~~  340 (356)
                      ....
T Consensus       331 t~k~  334 (352)
T TIGR02658       331 TGKE  334 (352)
T ss_pred             CCeE
Confidence            4433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2315|consensus

Probab=99.60  E-value=3.7e-13  Score=111.54  Aligned_cols=277  Identities=14%  Similarity=0.132  Sum_probs=179.2

Q ss_pred             CeeEEEecCCCCCceEEEEEe-----C-----CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         31 SISCMAFSPSTLPQYFLIAGS-----W-----DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~-----~-----dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      .++++.|+|.+   .+|.+--     .     .-.+.+|++++ +.. ...++.....-++..|+.|..+.+ --..+.+
T Consensus        75 ~~~~L~fSP~g---~yL~T~e~~~i~~~~~~~~pn~~v~~vet-~~~-~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev  148 (566)
T KOG2315|consen   75 KTYDLLFSPKG---NYLLTWEPWAIYGPKNASNPNVLVYNVET-GVQ-RSQIQKKMQNGWVPQFSIDESLAA-RLVSNEV  148 (566)
T ss_pred             eeeeeeecccc---cccccccccccccCCCCCCCceeeeeecc-cee-hhheehhhhcCcccccccchhhhh-hhhcceE
Confidence            67888899988   7776541     1     23577999988 332 233332222226889998875433 3335789


Q ss_pred             EEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEE-----EECCCeEEEEeCCCCCce-----EEEe-CCCeeEEEecC
Q psy12911        101 KCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMT-----GSWDKTLKFWDLRTPQPI-----MTIN-LPERCYCADVD  169 (356)
Q Consensus       101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~-----~~~~-~~~~~~~~~~~  169 (356)
                      .+|++...+...-.-|...|..+.++|.|....+++     .+.-+.|+||.......-     ++|- ...-.+.+...
T Consensus       149 ~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~  228 (566)
T KOG2315|consen  149 QFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKL  228 (566)
T ss_pred             EEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccC
Confidence            999998866665556788999999997656666665     344567999987632211     1221 11112222323


Q ss_pred             CC-eEEEEe-----------cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        170 YP-LAVVGT-----------AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       170 ~~-~~~~~~-----------~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                      +. +|+.++           .+.+++++++.+...   .+.....++|.++.|+|++.  ...++.|-.-..+.|||++.
T Consensus       229 gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~---~V~L~k~GPVhdv~W~~s~~--EF~VvyGfMPAkvtifnlr~  303 (566)
T KOG2315|consen  229 GTALLVLASTDVDKTNASYYGEQTLYLLATQGESV---SVPLLKEGPVHDVTWSPSGR--EFAVVYGFMPAKVTIFNLRG  303 (566)
T ss_pred             CceEEEEEEEeecCCCccccccceEEEEEecCceE---EEecCCCCCceEEEECCCCC--EEEEEEecccceEEEEcCCC
Confidence            33 333222           235788888874322   22224468999999999932  13345566778899999875


Q ss_pred             CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC---CeEEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911        238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE---GTFSFWDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                      .   +++.+..  +           +-+++-|+|.|++|+.++-+   |.|.|||+.+.+++..+.+..  -+-+.|+||
T Consensus       304 ~---~v~df~e--g-----------pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~Pd  365 (566)
T KOG2315|consen  304 K---PVFDFPE--G-----------PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPD  365 (566)
T ss_pred             C---EeEeCCC--C-----------CccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCC
Confidence            3   3444432  2           67899999999999887754   789999999988888887543  356899999


Q ss_pred             CCEEEEEeccC---CcCCCccCCCC
Q psy12911        315 GQIFAYAVSYD---WSKGHEHNNPN  336 (356)
Q Consensus       315 ~~~l~~~s~~d---~~~~~~~~~~~  336 (356)
                      |++++++..--   -++++.+|+-.
T Consensus       366 Ge~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  366 GEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CcEEEEEeccccEEecCCeEEEEec
Confidence            99999998642   33444444433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=5.4e-13  Score=115.72  Aligned_cols=198  Identities=12%  Similarity=0.037  Sum_probs=132.5

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeC---CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE-EcCCC-
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSW---DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM-AGCDK-   98 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg-   98 (356)
                      .+..|...+.+.+|+|+|   +.|+..+.   +..|.+||+.++...   .+....+...+++|+|||+.|+. .+.+| 
T Consensus       198 ~lt~~~~~v~~p~wSpDg---~~la~~s~~~~~~~l~~~dl~~g~~~---~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~  271 (433)
T PRK04922        198 TILRSAEPILSPAWSPDG---KKLAYVSFERGRSAIYVQDLATGQRE---LVASFRGINGAPSFSPDGRRLALTLSRDGN  271 (433)
T ss_pred             EeecCCCccccccCCCCC---CEEEEEecCCCCcEEEEEECCCCCEE---EeccCCCCccCceECCCCCEEEEEEeCCCC
Confidence            345567789999999999   88887764   347999999774332   23334445568899999997764 44454 


Q ss_pred             -eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEEC-CCe--EEEEeCCCCCceEEE-eCC-CeeEEEecCCCe
Q psy12911         99 -TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW-DKT--LKFWDLRTPQPIMTI-NLP-ERCYCADVDYPL  172 (356)
Q Consensus        99 -~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~-~~~-~~~~~~~~~~~~  172 (356)
                       .|++||+.+++...+..+.......+|+  ||++.|+.++. +|.  |.++|+.+++..... ... .....++++++.
T Consensus       272 ~~Iy~~d~~~g~~~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~  349 (433)
T PRK04922        272 PEIYVMDLGSRQLTRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKK  349 (433)
T ss_pred             ceEEEEECCCCCeEECccCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCE
Confidence             6999999998877766666666788999  99998887764 444  777777766543222 111 124567788888


Q ss_pred             EEEEecCC---eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC---CeEEEEEeCC
Q psy12911        173 AVVGTAGR---GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE---GRVAIQYVNP  237 (356)
Q Consensus       173 ~~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d---g~i~i~~~~~  237 (356)
                      ++..+.++   .|.+||+.++....  ..  .........|+|+    +..++..+.+   +.+.+++.+.
T Consensus       350 Ia~~~~~~~~~~I~v~d~~~g~~~~--Lt--~~~~~~~p~~spd----G~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        350 IAMVHGSGGQYRIAVMDLSTGSVRT--LT--PGSLDESPSFAPN----GSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             EEEEECCCCceeEEEEECCCCCeEE--CC--CCCCCCCceECCC----CCEEEEEEecCCceEEEEEECCC
Confidence            87765433   69999998765331  11  1123456789999    7776666553   3455555543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.60  E-value=2.2e-12  Score=108.26  Aligned_cols=262  Identities=15%  Similarity=0.092  Sum_probs=155.3

Q ss_pred             CCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE
Q psy12911         15 TPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA   94 (356)
Q Consensus        15 ~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~   94 (356)
                      +....+.+..+....+.-..+.|+|||   +++++++.||.|.++|+.+  .+.+.++.. .....++++++||++++++
T Consensus        22 D~~t~~~~~~i~~~~~~h~~~~~s~Dg---r~~yv~~rdg~vsviD~~~--~~~v~~i~~-G~~~~~i~~s~DG~~~~v~   95 (369)
T PF02239_consen   22 DGATNKVVARIPTGGAPHAGLKFSPDG---RYLYVANRDGTVSVIDLAT--GKVVATIKV-GGNPRGIAVSPDGKYVYVA   95 (369)
T ss_dssp             ETTT-SEEEEEE-STTEEEEEE-TT-S---SEEEEEETTSEEEEEETTS--SSEEEEEE--SSEEEEEEE--TTTEEEEE
T ss_pred             ECCCCeEEEEEcCCCCceeEEEecCCC---CEEEEEcCCCeEEEEECCc--ccEEEEEec-CCCcceEEEcCCCCEEEEE
Confidence            344456666666544444557899999   9999999999999999988  345566654 3456789999999999877


Q ss_pred             c-CCCeEEEEEcCCCceeeecc--------cCCCeeEEEEEeCCCCCeEEEEEC-CCeEEEEeCCCCCce--EEEeCCC-
Q psy12911         95 G-CDKTVKCWDLASNQSMQVAQ--------HDAPVKTCHWIKAPNYTCLMTGSW-DKTLKFWDLRTPQPI--MTINLPE-  161 (356)
Q Consensus        95 ~-~dg~i~vwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~--~~~~~~~-  161 (356)
                      . .++.+.++|.++.+.++...        ....+.++..+  +....++..-. .+.|.+.|....+.+  ..+.... 
T Consensus        96 n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s--~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~  173 (369)
T PF02239_consen   96 NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS--PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRF  173 (369)
T ss_dssp             EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE---SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TT
T ss_pred             ecCCCceeEeccccccceeecccccccccccCCCceeEEec--CCCCEEEEEEccCCeEEEEEeccccccceeeeccccc
Confidence            6 48999999999988776221        23467778777  66665555544 488989898776544  3444333 


Q ss_pred             -eeEEEecCCCeEEE-EecCCeEEEEeCCCCccccccc--cCc-------------------------------------
Q psy12911        162 -RCYCADVDYPLAVV-GTAGRGIVLYQLEGKPQEFKKT--ESP-------------------------------------  200 (356)
Q Consensus       162 -~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~--~~~-------------------------------------  200 (356)
                       .-..+++++.++++ ....+.|.++|..++.......  ..+                                     
T Consensus       174 ~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v  253 (369)
T PF02239_consen  174 PHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSV  253 (369)
T ss_dssp             EEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred             ccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCcccc
Confidence             23456666666555 4556778888877653221100  000                                     


Q ss_pred             -------------ccccceEEEeecCCCCCCCeEEEe----ecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccc
Q psy12911        201 -------------LKYQNRCIAIFRDKKKQPAGYGLG----SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYA  263 (356)
Q Consensus       201 -------------~~~~i~~~~~~~~~~~~~~~~~~~----~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                                   ..+...-+..+|+    +.++.+.    ...+.|.++|.+..  +...++.....          ..
T Consensus       254 ~d~~~wkvv~~I~~~G~glFi~thP~----s~~vwvd~~~~~~~~~v~viD~~tl--~~~~~i~~~~~----------~~  317 (369)
T PF02239_consen  254 HDDYAWKVVKTIPTQGGGLFIKTHPD----SRYVWVDTFLNPDADTVQVIDKKTL--KVVKTITPGPG----------KR  317 (369)
T ss_dssp             STTTBTSEEEEEE-SSSS--EE--TT-----SEEEEE-TT-SSHT-EEEEECCGT--EEEE-HHHHHT------------
T ss_pred             chhhcCeEEEEEECCCCcceeecCCC----CccEEeeccCCCCCceEEEEECcCc--ceeEEEeccCC----------Cc
Confidence                         0111233444555    5566665    44577888887654  23333322211          04


Q ss_pred             eEEEEEeCCCCEEEEEcC--CCeEEEEEcCcceecCCCC
Q psy12911        264 VNGIVFHPVHGTLATVGS--EGTFSFWDKDARTKLKPSE  300 (356)
Q Consensus       264 i~~i~~sp~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~  300 (356)
                      +..+.|+++|+++..+..  ++.|.+||..+.+.+.++.
T Consensus       318 ~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  318 VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             EeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            889999999986654433  3479999999999887765

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.59  E-value=3.1e-13  Score=103.05  Aligned_cols=150  Identities=19%  Similarity=0.374  Sum_probs=109.0

Q ss_pred             eEEEecCCCCCceEEEEEeC----------CCeEEEEeccCCCceeeeeec-cCCcceeEEEEccCCCeEEEE--cCCCe
Q psy12911         33 SCMAFSPSTLPQYFLIAGSW----------DNNVRCWEVEPNGKTIPKSMQ-GMSEPVLDVAWIDDGTKVFMA--GCDKT   99 (356)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~--~~dg~   99 (356)
                      ..+.|++.|   ++|++-..          -+...||.++..+... ..+. ...++|.+++|+|+|+.|++.  ..++.
T Consensus         9 ~~~~W~~~G---~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~-~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~   84 (194)
T PF08662_consen    9 AKLHWQPSG---DYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPV-ESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK   84 (194)
T ss_pred             EEEEecccC---CEEEEEEEEeeccCcceEEeeEEEEEEecCCCcc-ceeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence            467899999   66554432          2456777775533332 3332 245579999999999987654  35779


Q ss_pred             EEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC---CeEEEEeCCCCCceEEEeCCC-eeEEEecCCCeEEE
Q psy12911        100 VKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD---KTLKFWDLRTPQPIMTINLPE-RCYCADVDYPLAVV  175 (356)
Q Consensus       100 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  175 (356)
                      |.+||++ ++.+... +...+..+.|+  |+|++|++++.+   |.|.+||+++.+.+...+... ..+.+++++.++++
T Consensus        85 v~lyd~~-~~~i~~~-~~~~~n~i~ws--P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   85 VTLYDVK-GKKIFSF-GTQPRNTISWS--PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLAT  160 (194)
T ss_pred             cEEEcCc-ccEeEee-cCCCceEEEEC--CCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEE
Confidence            9999997 3333322 35678899999  999999998754   679999999888888777554 45678888888888


Q ss_pred             Eec------CCeEEEEeCCCC
Q psy12911        176 GTA------GRGIVLYQLEGK  190 (356)
Q Consensus       176 ~~~------d~~i~i~d~~~~  190 (356)
                      +..      |+.++||+..+.
T Consensus       161 a~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEeccceeccccEEEEEecCe
Confidence            764      788999998765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.58  E-value=2.7e-11  Score=101.84  Aligned_cols=267  Identities=13%  Similarity=0.131  Sum_probs=167.9

Q ss_pred             EEEEeCC----CeEEEEeccCCCcee--eeeeccCCcceeEEEEccCCCeEEEEcC----CCeEEEEEcCCC--ceee--
Q psy12911         47 LIAGSWD----NNVRCWEVEPNGKTI--PKSMQGMSEPVLDVAWIDDGTKVFMAGC----DKTVKCWDLASN--QSMQ--  112 (356)
Q Consensus        47 l~~~~~d----g~i~vw~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~--~~~~--  112 (356)
                      +++|+..    +.|.+|+++.....+  ... .........++++|++++|+++..    ++.|..|++...  ++..  
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            5566666    799999994433322  222 223455677899999999998876    579999988764  4332  


Q ss_pred             -ecccCCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCC-CceE---EEe-------------CCCeeEEEecCCCeE
Q psy12911        113 -VAQHDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTP-QPIM---TIN-------------LPERCYCADVDYPLA  173 (356)
Q Consensus       113 -~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~---~~~-------------~~~~~~~~~~~~~~~  173 (356)
                       ..........++++  +++++|+++. .+|.|.++++... ....   .+.             .+...+.++++++++
T Consensus        81 ~~~~~g~~p~~i~~~--~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v  158 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVD--PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV  158 (345)
T ss_dssp             EEEESSSCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred             eeccCCCCcEEEEEe--cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence             22234455678888  9999988887 4899999999874 3222   221             112356777888877


Q ss_pred             EEEe-cCCeEEEEeCCCCcccc---ccccCcccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCCC--CCccee
Q psy12911        174 VVGT-AGRGIVLYQLEGKPQEF---KKTESPLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPANP--KDNFTF  246 (356)
Q Consensus       174 ~~~~-~d~~i~i~d~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~~--~~~~~~  246 (356)
                      ++.. ....|.+|++......+   .....+.....+.+.|+|+    +.++ ++.-.++.|.+++++....  +.+..+
T Consensus       159 ~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pd----g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~  234 (345)
T PF10282_consen  159 YVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPD----GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI  234 (345)
T ss_dssp             EEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TT----SSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCC----cCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence            7654 35789999998765221   2223345667899999999    5555 5556688899999984332  112222


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCCCEEEEEc-CCCeEEEEEcC--cce--ecCCCCCCccceEEEEECCCCCEEEEE
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWDKD--ART--KLKPSEAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                      .....     +.........|+++|||++|+++. ..+.|.+|++.  +++  .+..+.......+.++++|+|++|+++
T Consensus       235 ~~~~~-----~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va  309 (345)
T PF10282_consen  235 STLPE-----GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA  309 (345)
T ss_dssp             ESCET-----TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred             eeccc-----cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence            11111     111111577899999999877654 56789999993  232  233333333457899999999999998


Q ss_pred             eccC
Q psy12911        322 VSYD  325 (356)
Q Consensus       322 s~~d  325 (356)
                      ..++
T Consensus       310 ~~~s  313 (345)
T PF10282_consen  310 NQDS  313 (345)
T ss_dssp             ETTT
T ss_pred             ecCC
Confidence            7543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.5e-12  Score=113.17  Aligned_cols=202  Identities=13%  Similarity=0.054  Sum_probs=135.0

Q ss_pred             CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEEC---CCeEEEEeCCCCCceEEEe--CCCeeEEEecCCCe
Q psy12911         98 KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW---DKTLKFWDLRTPQPIMTIN--LPERCYCADVDYPL  172 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~  172 (356)
                      ..|.++|........+..+...+...+|+  |||+.|+..+.   +..|++||+.+++......  .......+++++..
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wS--pDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFS--PNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEEC--CCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence            47999999877776777888899999999  99998888764   4689999998886533222  22234567778876


Q ss_pred             EE-EEecCC--eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec-CC--eEEEEEeCCCCCCCccee
Q psy12911        173 AV-VGTAGR--GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV-EG--RVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       173 ~~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-dg--~i~i~~~~~~~~~~~~~~  246 (356)
                      ++ +.+.++  .|.+||+.++...  .+. .+........|+|+    +..++..+. +|  .|++++++...   ...+
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~--~Lt-~~~~~~~~~~~spD----G~~i~f~s~~~g~~~Iy~~d~~g~~---~~~l  329 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTT--RLT-DSPAIDTSPSYSPD----GSQIVFESDRSGSPQLYVMNADGSN---PRRI  329 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceE--Ecc-CCCCccCceeEcCC----CCEEEEEECCCCCCeEEEEECCCCC---eEEe
Confidence            65 445454  4777788776432  111 23344567899999    777776653 44  46666665432   2222


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC---CeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE---GTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      ..+..           .+....|+|||++|+..+.+   ..|.+||+..+.. ..+. ....+....|+|||++|+..+.
T Consensus       330 t~~~~-----------~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        330 SFGGG-----------RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             ecCCC-----------cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEc
Confidence            22222           45678899999999876543   3688899865443 2232 1234678899999999988775


Q ss_pred             c
Q psy12911        324 Y  324 (356)
Q Consensus       324 ~  324 (356)
                      +
T Consensus       397 ~  397 (435)
T PRK05137        397 T  397 (435)
T ss_pred             c
Confidence            3

>KOG2394|consensus

Probab=99.58  E-value=1.3e-14  Score=119.30  Aligned_cols=93  Identities=25%  Similarity=0.394  Sum_probs=84.1

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  108 (356)
                      .+.|+..+|+|||   ++||+.+.||.+||||..+  +.+...++.--+...|++|||||++|++|+.|--|.||.+..+
T Consensus       290 ~g~in~f~FS~DG---~~LA~VSqDGfLRvF~fdt--~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er  364 (636)
T KOG2394|consen  290 EGSINEFAFSPDG---KYLATVSQDGFLRIFDFDT--QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER  364 (636)
T ss_pred             cccccceeEcCCC---ceEEEEecCceEEEeeccH--HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence            4499999999999   9999999999999999988  5555556656678999999999999999999999999999999


Q ss_pred             ceee-ecccCCCeeEEEEE
Q psy12911        109 QSMQ-VAQHDAPVKTCHWI  126 (356)
Q Consensus       109 ~~~~-~~~~~~~v~~~~~~  126 (356)
                      +.+. -.+|.+.|..++|.
T Consensus       365 RVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  365 RVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             eEEEeccccccceeeEeec
Confidence            8886 68999999999998

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.58  E-value=1.4e-12  Score=113.43  Aligned_cols=219  Identities=13%  Similarity=0.097  Sum_probs=137.5

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCC---CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE-EcCC-
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWD---NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM-AGCD-   97 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d-   97 (356)
                      +.+..+...+.+.+|+|+|   ++|+.+..+   ..|++||+.++...   .+..+...+.+++|+|||+.|+. .+.+ 
T Consensus       183 ~~l~~~~~~~~~p~~Spdg---~~la~~~~~~~~~~i~v~d~~~g~~~---~~~~~~~~~~~~~~spDg~~l~~~~~~~~  256 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDG---QKLAYVSFESGKPEIYVQDLATGQRE---KVASFPGMNGAPAFSPDGSKLAVSLSKDG  256 (417)
T ss_pred             EEeecCCCceecccCCCCC---CEEEEEEcCCCCcEEEEEECCCCCEE---EeecCCCCccceEECCCCCEEEEEECCCC
Confidence            3344566678999999999   888877644   47999999873222   23345566778999999997764 4444 


Q ss_pred             -CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC-C--eEEEEeCCCCCceEEEeCCCeeEEEecCCCeE
Q psy12911         98 -KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD-K--TLKFWDLRTPQPIMTINLPERCYCADVDYPLA  173 (356)
Q Consensus        98 -g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (356)
                       ..|++||+.+++...+..+........|+  ++++.|+..+.. +  .|.++|+.+++.. .+..              
T Consensus       257 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~--------------  319 (417)
T TIGR02800       257 NPDIYVMDLDGKQLTRLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF--------------  319 (417)
T ss_pred             CccEEEEECCCCCEEECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec--------------
Confidence             36999999988776666666556677898  899888776543 2  4666665543321 1110              


Q ss_pred             EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC---eEEEEEeCCCCCCCcceeeeec
Q psy12911        174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG---RVAIQYVNPANPKDNFTFKCHR  250 (356)
Q Consensus       174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg---~i~i~~~~~~~~~~~~~~~~~~  250 (356)
                                                 .........|+|+    +..++.+..++   .|.+|++....   ...+....
T Consensus       320 ---------------------------~~~~~~~~~~spd----g~~i~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~  365 (417)
T TIGR02800       320 ---------------------------RGGYNASPSWSPD----GDLIAFVHREGGGFNIAVMDLDGGG---ERVLTDTG  365 (417)
T ss_pred             ---------------------------CCCCccCeEECCC----CCEEEEEEccCCceEEEEEeCCCCC---eEEccCCC
Confidence                                       1123355678888    67777777665   66777765432   11121111


Q ss_pred             CCCCCCCcccccceEEEEEeCCCCEEEEEcCCC---eEEEEEcCcceecCCCCCCccceEEEEE
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG---TFSFWDKDARTKLKPSEAMDMSISTCAL  311 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~  311 (356)
                                  ......|+|+|++|+..+.++   .+++.+.. ++....+..+.+.+..++|
T Consensus       366 ------------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       366 ------------LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             ------------CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence                        233468999999888776654   45565644 4444445444445555554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.58  E-value=1.6e-12  Score=112.96  Aligned_cols=204  Identities=17%  Similarity=0.159  Sum_probs=131.2

Q ss_pred             eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC---CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCC
Q psy12911         55 NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD---KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNY  131 (356)
Q Consensus        55 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  131 (356)
                      .|.++|...  ... +.+..+...+...+|+|||++|+.+..+   ..|++||+.+++...+..+...+.+++|+  |++
T Consensus       171 ~l~~~d~~g--~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~s--pDg  245 (417)
T TIGR02800       171 ELQVADYDG--ANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFS--PDG  245 (417)
T ss_pred             eEEEEcCCC--CCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEEC--CCC
Confidence            577777654  222 4455567789999999999999887653   48999999998776666666777789999  999


Q ss_pred             CeEEEE-ECCC--eEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEE
Q psy12911        132 TCLMTG-SWDK--TLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCI  208 (356)
Q Consensus       132 ~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~  208 (356)
                      +.|+.. +.++  .|++||+.+++... +..                                         +.......
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~-----------------------------------------~~~~~~~~  283 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQLTR-LTN-----------------------------------------GPGIDTEP  283 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCEEE-CCC-----------------------------------------CCCCCCCE
Confidence            877644 3333  46667765543211 110                                         11112345


Q ss_pred             EeecCCCCCCCeEEEeec-CC--eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC--
Q psy12911        209 AIFRDKKKQPAGYGLGSV-EG--RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG--  283 (356)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~-dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg--  283 (356)
                      .|+|+    +..++..+. .+  .|++++++..  + ...+..+..           .+....|+|+|++|+.++.++  
T Consensus       284 ~~s~d----g~~l~~~s~~~g~~~iy~~d~~~~--~-~~~l~~~~~-----------~~~~~~~spdg~~i~~~~~~~~~  345 (417)
T TIGR02800       284 SWSPD----GKSIAFTSDRGGSPQIYMMDADGG--E-VRRLTFRGG-----------YNASPSWSPDGDLIAFVHREGGG  345 (417)
T ss_pred             EECCC----CCEEEEEECCCCCceEEEEECCCC--C-EEEeecCCC-----------CccCeEECCCCCEEEEEEccCCc
Confidence            67777    666655543 33  4555555433  2 222222222           466789999999999887775  


Q ss_pred             -eEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        284 -TFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       284 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                       .|.+||+.++.... +... ......+|+|||++|+.++.++
T Consensus       346 ~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       346 FNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             eEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC
Confidence             79999988764322 2211 2234568999999999988654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=4.2e-12  Score=110.48  Aligned_cols=232  Identities=15%  Similarity=0.105  Sum_probs=144.5

Q ss_pred             eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC---CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCC
Q psy12911         55 NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD---KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNY  131 (356)
Q Consensus        55 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  131 (356)
                      .|.++|.+.  ... +.+..+...+....|+|||+.|+..+.+   ..|.+||+.+++...+....+.+....|+  |||
T Consensus       180 ~l~~~d~~g--~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~S--pDG  254 (430)
T PRK00178        180 TLQRSDYDG--ARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWS--PDG  254 (430)
T ss_pred             EEEEECCCC--CCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEEC--CCC
Confidence            466667654  222 3455567789999999999999876643   47999999998876655555566678999  999


Q ss_pred             CeEEE-EECCC--eEEEEeCCCCCceEEEeCC--CeeEEEecCCCeEEEEec-C--CeEEEEeCCCCccccccccCcccc
Q psy12911        132 TCLMT-GSWDK--TLKFWDLRTPQPIMTINLP--ERCYCADVDYPLAVVGTA-G--RGIVLYQLEGKPQEFKKTESPLKY  203 (356)
Q Consensus       132 ~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~  203 (356)
                      +.|+. ...+|  .|++||+.+++........  .....+++++..++..+. +  ..|.++++.++........   ..
T Consensus       255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~---~~  331 (430)
T PRK00178        255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV---GN  331 (430)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC---CC
Confidence            88774 44454  5888899887644322222  123456777777666553 3  3677778776543211111   12


Q ss_pred             cceEEEeecCCCCCCCeEEEeec-CC--eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        204 QNRCIAIFRDKKKQPAGYGLGSV-EG--RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       204 ~i~~~~~~~~~~~~~~~~~~~~~-dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                      ......|+|+    +..++.... ++  .|.++|+.....   ..+.. ..           ......|+|||++++..+
T Consensus       332 ~~~~~~~Spd----g~~i~~~~~~~~~~~l~~~dl~tg~~---~~lt~-~~-----------~~~~p~~spdg~~i~~~~  392 (430)
T PRK00178        332 YNARPRLSAD----GKTLVMVHRQDGNFHVAAQDLQRGSV---RILTD-TS-----------LDESPSVAPNGTMLIYAT  392 (430)
T ss_pred             CccceEECCC----CCEEEEEEccCCceEEEEEECCCCCE---EEccC-CC-----------CCCCceECCCCCEEEEEE
Confidence            2345688998    667766654 33  466677665432   11211 11           122458999999887765


Q ss_pred             CC---CeEEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911        281 SE---GTFSFWDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       281 ~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                      .+   ..|.++++. +.....+..+.+.+...+|+|-
T Consensus       393 ~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        393 RQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             ecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence            43   357777775 3333445445566777788763

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.7e-12  Score=112.60  Aligned_cols=222  Identities=14%  Similarity=0.066  Sum_probs=133.5

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeC-CC--eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE-EcCCC--
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSW-DN--NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM-AGCDK--   98 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg--   98 (356)
                      +..+...+.+..|+|||   +.|+..+. ++  .|.+||+.++....+..+   .+.....+|+|||+.|+. .+.++  
T Consensus       213 l~~~~~~~~~p~wSPDG---~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSPDG~~La~~~~~~g~~  286 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDG---RKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFSPDGKKLALVLSKDGQP  286 (448)
T ss_pred             eecCCCcccCceECCCC---CEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeECCCCCEEEEEEeCCCCe
Confidence            33456678899999999   77776653 33  588888877433222222   334457899999998875 44555  


Q ss_pred             eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEEC-CC--eEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEE
Q psy12911         99 TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW-DK--TLKFWDLRTPQPIMTINLPERCYCADVDYPLAVV  175 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (356)
                      .|.++|+.+++...+..+........|+  ||++.|+..+. ++  .|.++|+.+++... +..                
T Consensus       287 ~Iy~~dl~tg~~~~lt~~~~~~~~p~wS--pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~----------------  347 (448)
T PRK04792        287 EIYVVDIATKALTRITRHRAIDTEPSWH--PDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTF----------------  347 (448)
T ss_pred             EEEEEECCCCCeEECccCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEE-Eec----------------
Confidence            4888899888877666666667788999  99988876653 23  35555554443211 110                


Q ss_pred             EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec-CCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV-EGRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                                               ........+|+|+    +..++..+. ++...||-++...... ..+....    
T Consensus       348 -------------------------~g~~~~~~~~SpD----G~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~----  393 (448)
T PRK04792        348 -------------------------EGEQNLGGSITPD----GRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTR----  393 (448)
T ss_pred             -------------------------CCCCCcCeeECCC----CCEEEEEEecCCceEEEEEECCCCCe-EEccCCC----
Confidence                                     0011123577888    556655544 4444454443222121 1121111    


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCC-C--eEEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSE-G--TFSFWDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                              ......|+|+|++|+..+.+ |  .+++++.+ |+....+..+.+.+...+|||-
T Consensus       394 --------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        394 --------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             --------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence                    11234799999887765543 3  37777874 5566666666667788888873

>KOG2321|consensus

Probab=99.56  E-value=2.7e-12  Score=106.87  Aligned_cols=252  Identities=14%  Similarity=0.039  Sum_probs=164.2

Q ss_pred             cCCcceeEEEEccCCCeEE-EEcCCCeEEEEEcCCCceeeecccCCCeeE-EEEEeCCCCCeEEEEECCCeEEEEeCCCC
Q psy12911         74 GMSEPVLDVAWIDDGTKVF-MAGCDKTVKCWDLASNQSMQVAQHDAPVKT-CHWIKAPNYTCLMTGSWDKTLKFWDLRTP  151 (356)
Q Consensus        74 ~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  151 (356)
                      .+...-+.|..+|||+|++ +|..--.|++||+..-.+.........+.. .-.+  .|-..++.-..|.+|.+...-..
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLs--DD~SK~v~L~~DR~IefHak~G~  126 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILS--DDYSKSVFLQNDRTIEFHAKYGR  126 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEec--cchhhheEeecCceeeehhhcCe
Confidence            4677888999999999865 555678999999986655433333333433 3333  55555666667888876542211


Q ss_pred             CceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEE
Q psy12911        152 QPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVA  231 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~  231 (356)
                      .....+.....-++.+...--+++++....|+-++++.+.-...  .......++++.+++.    ..++++|+.+|.+.
T Consensus       127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P--~~~~~~~lN~v~in~~----hgLla~Gt~~g~VE  200 (703)
T KOG2321|consen  127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNP--FETDSGELNVVSINEE----HGLLACGTEDGVVE  200 (703)
T ss_pred             eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccc--cccccccceeeeecCc----cceEEecccCceEE
Confidence            11222222333344444444677777778888899988752211  1122367899999998    67899999999999


Q ss_pred             EEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC-CCccceEEEE
Q psy12911        232 IQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE-AMDMSISTCA  310 (356)
Q Consensus       232 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~  310 (356)
                      .||.+..  ..+.++..........+......|+++.|+.+|-.+++|..+|.|.|||+++.+++..-. +..-+|..+.
T Consensus       201 fwDpR~k--srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~  278 (703)
T KOG2321|consen  201 FWDPRDK--SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD  278 (703)
T ss_pred             Eecchhh--hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence            9999776  334444433322111222222369999999999999999999999999999887765443 3355899999


Q ss_pred             ECCC--CCEEEEEeccCCcCCCccCCCCCCc
Q psy12911        311 LNHN--GQIFAYAVSYDWSKGHEHNNPNKGN  339 (356)
Q Consensus       311 ~s~~--~~~l~~~s~~d~~~~~~~~~~~~~~  339 (356)
                      |-+.  +..|++..    .....+|++..+.
T Consensus       279 ~~~~~~q~~v~S~D----k~~~kiWd~~~Gk  305 (703)
T KOG2321|consen  279 WQDTDQQNKVVSMD----KRILKIWDECTGK  305 (703)
T ss_pred             ccccCCCceEEecc----hHHhhhcccccCC
Confidence            9776  45566654    2445556655443

>KOG4547|consensus

Probab=99.53  E-value=4.5e-13  Score=111.75  Aligned_cols=176  Identities=14%  Similarity=0.131  Sum_probs=143.6

Q ss_pred             CCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----eeEE----Eec------------------CCCeEEEEecCCeE
Q psy12911        129 PNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----RCYC----ADV------------------DYPLAVVGTAGRGI  182 (356)
Q Consensus       129 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~----~~~------------------~~~~~~~~~~d~~i  182 (356)
                      +...+++....||.+++||...++....+....    .+.+    +..                  +...++.|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            566789999999999999999888776665321    1211    111                  11267889999999


Q ss_pred             EEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCccccc
Q psy12911        183 VLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIY  262 (356)
Q Consensus       183 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      .+|++..++...+.....|.+.+.++.++.+    ...+.+++.|+.+..|+....  ..+....+...           
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~----~~ciyS~~ad~~v~~~~~~~~--~~~~~~~~~~~-----------  145 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQR----LGCIYSVGADLKVVYILEKEK--VIIRIWKEQKP-----------  145 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccc----cCceEecCCceeEEEEecccc--eeeeeeccCCC-----------
Confidence            9999999988777777789999999999888    678999999999999998765  45555666555           


Q ss_pred             ceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCC-----CCEEEEEec
Q psy12911        263 AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHN-----GQIFAYAVS  323 (356)
Q Consensus       263 ~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~s~  323 (356)
                      .+.+++.+|||..+++++  +.|++||+++++.+..|.+|.++|++++|--+     |.++.++..
T Consensus       146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~  209 (541)
T KOG4547|consen  146 LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA  209 (541)
T ss_pred             ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc
Confidence            789999999999999986  57999999999999999999999999999887     778777643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.52  E-value=1.8e-10  Score=96.85  Aligned_cols=248  Identities=16%  Similarity=0.156  Sum_probs=159.2

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeC----CCeEEEEeccCC-C-ceeeeeeccCCcceeEEEEccCCCeEEEEcC-CCeEE
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSW----DNNVRCWEVEPN-G-KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVK  101 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~----dg~i~vw~~~~~-~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~  101 (356)
                      ...-..++++|++   ++|++...    ++.|..|++... + ...+............++++|++++|+++.. +|.|.
T Consensus        36 ~~~Ps~l~~~~~~---~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~  112 (345)
T PF10282_consen   36 GENPSWLAVSPDG---RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVS  112 (345)
T ss_dssp             SSSECCEEE-TTS---SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCCCceEEEEeCC---CEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEE
Confidence            3455678899998   88888876    579999999874 2 2233333334455668999999999998875 89999


Q ss_pred             EEEcCC-Cceee---ec-----------ccCCCeeEEEEEeCCCCCeEEEEEC-CCeEEEEeCCCCC--c--eEEEeCCC
Q psy12911        102 CWDLAS-NQSMQ---VA-----------QHDAPVKTCHWIKAPNYTCLMTGSW-DKTLKFWDLRTPQ--P--IMTINLPE  161 (356)
Q Consensus       102 vwd~~~-~~~~~---~~-----------~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~--~--~~~~~~~~  161 (356)
                      ++++.. +.+..   ..           .......++.++  |+++++++... ...|.+|++....  .  ...+..+.
T Consensus       113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~--pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~  190 (345)
T PF10282_consen  113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS--PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP  190 (345)
T ss_dssp             EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred             EEEccCCcccceeeeecccCCCCCcccccccccceeEEEC--CCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence            999987 33322   11           123456789999  99998887653 3579999997765  2  22333222


Q ss_pred             ----eeEEEecCCCeEEEEe-cCCeEEEEeCCC--Cccccc----cccCcc--cccceEEEeecCCCCCCCeEEEee-cC
Q psy12911        162 ----RCYCADVDYPLAVVGT-AGRGIVLYQLEG--KPQEFK----KTESPL--KYQNRCIAIFRDKKKQPAGYGLGS-VE  227 (356)
Q Consensus       162 ----~~~~~~~~~~~~~~~~-~d~~i~i~d~~~--~~~~~~----~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~-~d  227 (356)
                          +-+.+++++.++++.. .++.|.+|++..  +.....    ......  ......++++|+    ++++.++. ..
T Consensus       191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd----g~~lyvsnr~~  266 (345)
T PF10282_consen  191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD----GRFLYVSNRGS  266 (345)
T ss_dssp             TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT----SSEEEEEECTT
T ss_pred             CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC----CCEEEEEeccC
Confidence                4677888888776654 478899999883  211111    111111  125678999999    66665554 67


Q ss_pred             CeEEEEEeCCCCCC--CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc-CCCeEEEEEc--Ccceec
Q psy12911        228 GRVAIQYVNPANPK--DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWDK--DARTKL  296 (356)
Q Consensus       228 g~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd~--~~~~~~  296 (356)
                      +.|.+|+++..+..  .+..+.....           ..+.++++|+|++|+++. .++.|.+|++  ++|.+.
T Consensus       267 ~sI~vf~~d~~~g~l~~~~~~~~~G~-----------~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~  329 (345)
T PF10282_consen  267 NSISVFDLDPATGTLTLVQTVPTGGK-----------FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT  329 (345)
T ss_dssp             TEEEEEEECTTTTTEEEEEEEEESSS-----------SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEeCCCC-----------CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence            78999999654322  2222222111           478999999999988776 5678999976  456543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0974|consensus

Probab=99.52  E-value=1e-11  Score=110.28  Aligned_cols=119  Identities=22%  Similarity=0.321  Sum_probs=103.6

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  103 (356)
                      .+.||.+.|.++.|+-+|   .++++.|.|.++|+|++++.. ......-+|+..|..++|.|+  .+++++.|.+.++|
T Consensus       170 ~l~GHeG~iF~i~~s~dg---~~i~s~SdDRsiRlW~i~s~~-~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW  243 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDG---RYIASVSDDRSIRLWPIDSRE-VLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVW  243 (967)
T ss_pred             eecccCCceEEEEEccCC---cEEEEEecCcceeeeeccccc-ccCcccccccceeEEEEeccc--eeEEeccceEEEEE
Confidence            688999999999999999   999999999999999999843 333466789999999999998  89999999999999


Q ss_pred             EcCCCceeeecccC-CCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC
Q psy12911        104 DLASNQSMQVAQHD-APVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT  150 (356)
Q Consensus       104 d~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  150 (356)
                      +.+..+...+.+|. ..+..++..  ++...++|++.|+.+++||+..
T Consensus       244 ~~~~~~l~~y~~h~g~~iw~~~~~--~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  244 GVNGTQLEVYDEHSGKGIWKIAVP--IGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ecccceehhhhhhhhcceeEEEEc--CCceEEEeeccCcchhhhhhhc
Confidence            87766666666665 468899988  8888999999999999999753

>KOG0280|consensus

Probab=99.51  E-value=7.9e-12  Score=95.73  Aligned_cols=255  Identities=14%  Similarity=0.093  Sum_probs=170.2

Q ss_pred             CCCeEEEEeccCCCceeeeeec-cCCcceeEEEEcc---CCC-eEEEEcCCCeEEEEEcCCCceee-eccc------CCC
Q psy12911         52 WDNNVRCWEVEPNGKTIPKSMQ-GMSEPVLDVAWID---DGT-KVFMAGCDKTVKCWDLASNQSMQ-VAQH------DAP  119 (356)
Q Consensus        52 ~dg~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~s~---~~~-~l~~~~~dg~i~vwd~~~~~~~~-~~~~------~~~  119 (356)
                      ..|.+.+|++..........++ .....+..+.|..   +|. .++-+-.+|.|.++.....+... +.+-      ...
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            3478899998774432222222 2345677788864   455 45666678999999876543322 2221      113


Q ss_pred             eeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc--eEEEeCCC-eeEEEecC---CCeEEEEecCCeEEEEeCCCCccc
Q psy12911        120 VKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP--IMTINLPE-RCYCADVD---YPLAVVGTAGRGIVLYQLEGKPQE  193 (356)
Q Consensus       120 v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~-~~~~~~~~---~~~~~~~~~d~~i~i~d~~~~~~~  193 (356)
                      ..++.|+  +.+..++++..+|.+.+-+......  ++..+.|. .++...++   ++.+++|+.|+.+..||+|....-
T Consensus       124 ~lslD~~--~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~  201 (339)
T KOG0280|consen  124 ALSLDIS--TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF  201 (339)
T ss_pred             eeEEEee--ccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence            5677888  7888899999999999666554433  33555555 34443333   358899999999999999954433


Q ss_pred             cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC
Q psy12911        194 FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH  273 (356)
Q Consensus       194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~  273 (356)
                      .......|...|.+|..+|..   +.++++|+.|..|++||.+... ++++.-....            .|+.+.++|.-
T Consensus       202 i~~n~kvH~~GV~SI~ss~~~---~~~I~TGsYDe~i~~~DtRnm~-kPl~~~~v~G------------GVWRi~~~p~~  265 (339)
T KOG0280|consen  202 IWHNSKVHTSGVVSIYSSPPK---PTYIATGSYDECIRVLDTRNMG-KPLFKAKVGG------------GVWRIKHHPEI  265 (339)
T ss_pred             eeecceeeecceEEEecCCCC---CceEEEeccccceeeeehhccc-CccccCcccc------------ceEEEEecchh
Confidence            333345677889999988874   7899999999999999998442 4444333221            69999999964


Q ss_pred             --CEEEEEcCCCeEEEEEcCcc--e---ecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        274 --GTLATVGSEGTFSFWDKDAR--T---KLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       274 --~~l~s~~~dg~i~iwd~~~~--~---~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                        ++|+++-.+| .+|-+.+.+  +   .+...+.|.+-+..-.|.....+||+++.+|
T Consensus       266 ~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYD  323 (339)
T KOG0280|consen  266 FHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYD  323 (339)
T ss_pred             hhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccc
Confidence              4566665555 667776543  2   3445567877777888866677899988765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=2.2e-11  Score=105.71  Aligned_cols=206  Identities=16%  Similarity=0.137  Sum_probs=122.8

Q ss_pred             eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC---CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCC
Q psy12911         55 NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD---KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNY  131 (356)
Q Consensus        55 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  131 (356)
                      .|.++|.+..  .. +.+..+...+.+..|+|||+.|+..+.+   ..|++||+.+++...+....+......|+  |||
T Consensus       199 ~l~i~d~dG~--~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wS--PDG  273 (448)
T PRK04792        199 QLMIADYDGY--NE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFS--PDG  273 (448)
T ss_pred             EEEEEeCCCC--Cc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeEC--CCC
Confidence            5666676552  22 3445567789999999999998876543   36899999988765544444455678999  999


Q ss_pred             CeEEE-EECCCe--EEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEE
Q psy12911        132 TCLMT-GSWDKT--LKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCI  208 (356)
Q Consensus       132 ~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~  208 (356)
                      +.|+. .+.+|.  |+++|+.+++... +.                                         .........
T Consensus       274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt-----------------------------------------~~~~~~~~p  311 (448)
T PRK04792        274 KKLALVLSKDGQPEIYVVDIATKALTR-IT-----------------------------------------RHRAIDTEP  311 (448)
T ss_pred             CEEEEEEeCCCCeEEEEEECCCCCeEE-Cc-----------------------------------------cCCCCccce
Confidence            97765 444553  5555655443211 11                                         011233556


Q ss_pred             EeecCCCCCCCeEEEee-cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC-CC--e
Q psy12911        209 AIFRDKKKQPAGYGLGS-VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS-EG--T  284 (356)
Q Consensus       209 ~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-dg--~  284 (356)
                      +|+|+    +..++..+ .++...+|.++....+ ...+.....           .....+|+|||++|+..+. ++  .
T Consensus       312 ~wSpD----G~~I~f~s~~~g~~~Iy~~dl~~g~-~~~Lt~~g~-----------~~~~~~~SpDG~~l~~~~~~~g~~~  375 (448)
T PRK04792        312 SWHPD----GKSLIFTSERGGKPQIYRVNLASGK-VSRLTFEGE-----------QNLGGSITPDGRSMIMVNRTNGKFN  375 (448)
T ss_pred             EECCC----CCEEEEEECCCCCceEEEEECCCCC-EEEEecCCC-----------CCcCeeECCCCCEEEEEEecCCceE
Confidence            78888    56565544 3444455544332212 122211111           2345689999998877654 34  4


Q ss_pred             EEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        285 FSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       285 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      |.++|+.+++... +... .......|+|||++|+.++..+
T Consensus       376 I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~  414 (448)
T PRK04792        376 IARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQ  414 (448)
T ss_pred             EEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecC
Confidence            6667887775432 2211 1122458999999999987654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=5e-11  Score=102.73  Aligned_cols=211  Identities=8%  Similarity=0.008  Sum_probs=125.4

Q ss_pred             eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEE---EEcCC--CeEEEEEcCCCceeeecccCCCeeEEEEEeCC
Q psy12911         55 NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVF---MAGCD--KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAP  129 (356)
Q Consensus        55 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~d--g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~  129 (356)
                      .|.+.|.+.  ... +.+......+..-+|+|||+.++   +...+  ..|.+.++.+++...+....+.....+|+  |
T Consensus       166 ~l~~~d~dG--~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wS--P  240 (428)
T PRK01029        166 ELWSVDYDG--QNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFS--P  240 (428)
T ss_pred             eEEEEcCCC--CCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEEC--C
Confidence            566666654  222 33444556677889999997532   33333  46888899988877666666666778999  9


Q ss_pred             CCCeEEEEEC-CC----eEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCccccc
Q psy12911        130 NYTCLMTGSW-DK----TLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQ  204 (356)
Q Consensus       130 ~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  204 (356)
                      ||+.|+..+. +|    .+.+|++..+..                                    + . ...........
T Consensus       241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~------------------------------------g-~-~~~lt~~~~~~  282 (428)
T PRK01029        241 RKKLLAFISDRYGNPDLFIQSFSLETGAI------------------------------------G-K-PRRLLNEAFGT  282 (428)
T ss_pred             CCCEEEEEECCCCCcceeEEEeecccCCC------------------------------------C-c-ceEeecCCCCC
Confidence            9988887653 22    122234332100                                    0 0 00000001122


Q ss_pred             ceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCCC-CCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC
Q psy12911        205 NRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPAN-PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE  282 (356)
Q Consensus       205 i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d  282 (356)
                      ....+|+|+    +..++..+ .+|...+|.++... ......+..+..           .+....|||||+.|+..+.+
T Consensus       283 ~~~p~wSPD----G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-----------~~~~p~wSPDG~~Laf~~~~  347 (428)
T PRK01029        283 QGNPSFSPD----GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-----------NSSCPAWSPDGKKIAFCSVI  347 (428)
T ss_pred             cCCeEECCC----CCEEEEEECCCCCceEEEEECcccccceEEeccCCC-----------CccceeECCCCCEEEEEEcC
Confidence            345789999    67666555 46655666543211 111222222222           46778999999988866543


Q ss_pred             ---CeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        283 ---GTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       283 ---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                         ..|.+||+.+++...... ....+....|+|||++|+..+..
T Consensus       348 ~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        348 KGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             CCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC
Confidence               479999999886543322 23456789999999999877653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=5.2e-11  Score=103.70  Aligned_cols=198  Identities=14%  Similarity=0.090  Sum_probs=128.4

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCC---CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE-EcCCC
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWD---NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM-AGCDK   98 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg   98 (356)
                      +.+..+...+...+|+|+|   +.|+..+.+   ..|.+|++.++....   +....+.+....|+|||+.|+. ...+|
T Consensus       192 ~~l~~~~~~~~~p~wSpDG---~~la~~s~~~~~~~l~~~~l~~g~~~~---l~~~~g~~~~~~~SpDG~~la~~~~~~g  265 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDG---KRIAYVSFEQKRPRIFVQNLDTGRREQ---ITNFEGLNGAPAWSPDGSKLAFVLSKDG  265 (430)
T ss_pred             eEEecCCCceeeeeECCCC---CEEEEEEcCCCCCEEEEEECCCCCEEE---ccCCCCCcCCeEECCCCCEEEEEEccCC
Confidence            3344567789999999999   888776543   368899998743332   3323345567899999998874 44444


Q ss_pred             --eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEEC-CC--eEEEEeCCCCCceEEEeCCC--eeEEEecCCC
Q psy12911         99 --TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW-DK--TLKFWDLRTPQPIMTINLPE--RCYCADVDYP  171 (356)
Q Consensus        99 --~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~  171 (356)
                        .|++||+.+++...+..+........|+  |+++.|+..+. +|  .|+++|+.+++.........  ....+++++.
T Consensus       266 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~  343 (430)
T PRK00178        266 NPEIYVMDLASRQLSRVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGK  343 (430)
T ss_pred             CceEEEEECCCCCeEEcccCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence              6888899988877666666667778899  99988776654 33  58888887776433221111  2345677888


Q ss_pred             eEEEEecC-C--eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-Ce--EEEEEeC
Q psy12911        172 LAVVGTAG-R--GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-GR--VAIQYVN  236 (356)
Q Consensus       172 ~~~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-g~--i~i~~~~  236 (356)
                      .++....+ +  .|.++|+.++.......  .  .......|+|+    +..++..+.+ +.  +.+++.+
T Consensus       344 ~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~--~~~~~p~~spd----g~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        344 TLVMVHRQDGNFHVAAQDLQRGSVRILTD--T--SLDESPSVAPN----GTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             EEEEEEccCCceEEEEEECCCCCEEEccC--C--CCCCCceECCC----CCEEEEEEecCCceEEEEEECC
Confidence            77766543 2  58889988764322211  1  12235589998    6677666543 33  4455554

>KOG2314|consensus

Probab=99.47  E-value=1.1e-10  Score=97.25  Aligned_cols=269  Identities=13%  Similarity=0.143  Sum_probs=176.3

Q ss_pred             CCeeEEEecCCCCCceEEEEEeC-----------CCeEEEEeccCCCceeeeeecc--CCccee-EEEEccCCCeEEEEc
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSW-----------DNNVRCWEVEPNGKTIPKSMQG--MSEPVL-DVAWIDDGTKVFMAG   95 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~-----------dg~i~vw~~~~~~~~~~~~~~~--~~~~v~-~~~~s~~~~~l~~~~   95 (356)
                      ..|.-+.|||..   +||+|-+.           ...++|||+.++.  +.+.+..  ....+. -..||.|++++|--.
T Consensus       250 p~Vq~idfSP~E---kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~--lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~  324 (698)
T KOG2314|consen  250 PGVQFIDFSPNE---KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL--LKRSFPVIKSPYLKWPIFRWSHDDKYFARMT  324 (698)
T ss_pred             CCceeeecCCcc---ceEEEecCCccccCcccCCCceEEEEEccccc--hhcceeccCCCccccceEEeccCCceeEEec
Confidence            368899999998   99999763           2579999999843  3344443  222222 368999999998776


Q ss_pred             CCCeEEEEEcCCCceeee-cccCCCeeEEEEEeCCCCCeEEEEECC-----CeEEEEeCCCCCceEEEeCCC---eeEEE
Q psy12911         96 CDKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWD-----KTLKFWDLRTPQPIMTINLPE---RCYCA  166 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~---~~~~~  166 (356)
                      . ..|.||+..+-.++.. .-.-..|....|+  |.+++||.=...     ..+.+-.+.+++.+++-+...   --+.+
T Consensus       325 ~-~sisIyEtpsf~lld~Kslki~gIr~Fsws--P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhW  401 (698)
T KOG2314|consen  325 G-NSISIYETPSFMLLDKKSLKISGIRDFSWS--PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHW  401 (698)
T ss_pred             c-ceEEEEecCceeeecccccCCccccCcccC--CCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEe
Confidence            5 5799999876444432 2234678888999  877777764432     246666777776666655433   22334


Q ss_pred             ecCCCeEEEE----------ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec---CCeEEEE
Q psy12911        167 DVDYPLAVVG----------TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV---EGRVAIQ  233 (356)
Q Consensus       167 ~~~~~~~~~~----------~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---dg~i~i~  233 (356)
                      ..++++|++-          +.-..+.|+.++....++...  .....+...+|-|.    ++.+++-+.   ..++.+|
T Consensus       402 Qk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v--elke~vi~FaWEP~----gdkF~vi~g~~~k~tvsfY  475 (698)
T KOG2314|consen  402 QKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV--ELKESVIAFAWEPH----GDKFAVISGNTVKNTVSFY  475 (698)
T ss_pred             ccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee--ecchheeeeeeccC----CCeEEEEEccccccceeEE
Confidence            4445555542          223456788888776554444  35678889999998    555554432   4567888


Q ss_pred             EeCCC--CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE---cCCCeEEEEEcCcceecCCCCCCccceEE
Q psy12911        234 YVNPA--NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV---GSEGTFSFWDKDARTKLKPSEAMDMSIST  308 (356)
Q Consensus       234 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  308 (356)
                      -++..  .+..+..+..  .           ..+.+.|+|.|++++.+   |..|.+.++|+.-..+...-..-....+.
T Consensus       476 ~~e~~~~~~~lVk~~dk--~-----------~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~  542 (698)
T KOG2314|consen  476 AVETNIKKPSLVKELDK--K-----------FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATE  542 (698)
T ss_pred             EeecCCCchhhhhhhcc--c-----------ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccccccc
Confidence            77632  2233444433  2           57889999999998876   45688999998843322221111234578


Q ss_pred             EEECCCCCEEEEEeccC
Q psy12911        309 CALNHNGQIFAYAVSYD  325 (356)
Q Consensus       309 ~~~s~~~~~l~~~s~~d  325 (356)
                      +.|.|.|+|++++++..
T Consensus       543 veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  543 VEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             ceECCCCCEEEEeeehh
Confidence            99999999999998753

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.45  E-value=3e-09  Score=84.47  Aligned_cols=264  Identities=10%  Similarity=0.055  Sum_probs=172.8

Q ss_pred             CCeEEEEeccCCC-ceeeeeeccCCcceeEEEEccCCCeEEEEcC---CCeEEEEEcCC--Cceeee---cccCCCeeEE
Q psy12911         53 DNNVRCWEVEPNG-KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC---DKTVKCWDLAS--NQSMQV---AQHDAPVKTC  123 (356)
Q Consensus        53 dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~--~~~~~~---~~~~~~v~~~  123 (356)
                      +.-|++|++++.. ..-...+..+.+.++-|+|+|++++|+++-.   +|.|..|.+..  |++..+   .....+-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            4679999998432 2222334457788999999999999998865   47787777764  554332   1122333778


Q ss_pred             EEEeCCCCCeEEEEEC-CCeEEEEeCCC-CC---ceEEEeC------------CCeeEEEecCCCeEEEEec-CCeEEEE
Q psy12911        124 HWIKAPNYTCLMTGSW-DKTLKFWDLRT-PQ---PIMTINL------------PERCYCADVDYPLAVVGTA-GRGIVLY  185 (356)
Q Consensus       124 ~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~---~~~~~~~------------~~~~~~~~~~~~~~~~~~~-d~~i~i~  185 (356)
                      +++  +++++++++.. .|.|.++-++. |.   .+..+..            |.....+.++++++++..- ...|.+|
T Consensus        95 svd--~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706          95 SVD--EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EEC--CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence            888  99999888865 57899999866 32   2222221            1234556777777777654 4789999


Q ss_pred             eCCCCccccc-cccCcccccceEEEeecCCCCCCCeEE-EeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccc
Q psy12911        186 QLEGKPQEFK-KTESPLKYQNRCIAIFRDKKKQPAGYG-LGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYA  263 (356)
Q Consensus       186 d~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      ++..+..... ..........+-|.|+|+    +++.. +.--+++|.+|.++... ..+..+..+....  ........
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn----~k~aY~v~EL~stV~v~~y~~~~-g~~~~lQ~i~tlP--~dF~g~~~  245 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPN----GKYAYLVNELNSTVDVLEYNPAV-GKFEELQTIDTLP--EDFTGTNW  245 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCC----CcEEEEEeccCCEEEEEEEcCCC-ceEEEeeeeccCc--cccCCCCc
Confidence            9987653222 222244567899999999    55544 44568999999998752 2233333332221  12333336


Q ss_pred             eEEEEEeCCCCEEEEEcC-CCeEEEEEcCc--cee--cCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        264 VNGIVFHPVHGTLATVGS-EGTFSFWDKDA--RTK--LKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       264 i~~i~~sp~~~~l~s~~~-dg~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ...|..+|||++|.++.. ...|.+|.+..  +++  +.....+....+...|++.|++|+++..+.
T Consensus       246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s  312 (346)
T COG2706         246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS  312 (346)
T ss_pred             eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence            788999999999998753 34788887653  322  222233445578999999999999998654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.44  E-value=7.3e-12  Score=96.83  Aligned_cols=275  Identities=14%  Similarity=0.179  Sum_probs=149.7

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC---ceeeeeeccCC------------cceeEEEEccCCC--e
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG---KTIPKSMQGMS------------EPVLDVAWIDDGT--K   90 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~~~~------------~~v~~~~~s~~~~--~   90 (356)
                      ..+.|+++.|...|   .+|++|...|.|.+|.-+...   ......+++|.            ..|..+.|..++.  .
T Consensus        25 ead~ItaVefd~tg---~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h  101 (460)
T COG5170          25 EADKITAVEFDETG---LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             ccceeeEEEecccc---ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence            35689999999999   999999999999999876532   12223455664            3578888877543  5


Q ss_pred             EEEEcCCCeEEEEEcCCCceeeec----------ccCCCeeEEEEE--eC-CCCCeEEEEECCCeEEEEeCCCCCceEEE
Q psy12911         91 VFMAGCDKTVKCWDLASNQSMQVA----------QHDAPVKTCHWI--KA-PNYTCLMTGSWDKTLKFWDLRTPQPIMTI  157 (356)
Q Consensus        91 l~~~~~dg~i~vwd~~~~~~~~~~----------~~~~~v~~~~~~--~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  157 (356)
                      ++..+.|.+|++|.+.........          ...+++++..-.  |. .....++++.   ..|+|.         -
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~---p~rvya---------N  169 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK---PCRVYA---------N  169 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec---cceecc---------c
Confidence            666678999999998755321100          001111111000  00 0000111110   011110         0


Q ss_pred             eCCCeeEEEecCCC-eEEEEecCCeEEEEeCCCCcccccccc------CcccccceEEEeecCCCCCCCeEEEeecCCeE
Q psy12911        158 NLPERCYCADVDYP-LAVVGTAGRGIVLYQLEGKPQEFKKTE------SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRV  230 (356)
Q Consensus       158 ~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i  230 (356)
                      ..+-.+-++++..+ ..+....|-.|.+|++.-....+..+.      .....-|++..|+|..   ...+...+..|.|
T Consensus       170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~---cn~fmYSsSkG~I  246 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM---CNVFMYSSSKGEI  246 (460)
T ss_pred             cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH---cceEEEecCCCcE
Confidence            01111122222222 223333445555555543322111111      1122456788888874   4677888899999


Q ss_pred             EEEEeCCCCC----CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc-eecCCCCCCc--
Q psy12911        231 AIQYVNPANP----KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR-TKLKPSEAMD--  303 (356)
Q Consensus       231 ~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~--  303 (356)
                      ++-|++....    +.+........ ....-..-...|..+.|+++|+++++-+. -+|+|||++.. .+++++.-|.  
T Consensus       247 kl~DlRq~alcdn~~klfe~~~D~v-~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l  324 (460)
T COG5170         247 KLNDLRQSALCDNSKKLFELTIDGV-DVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDL  324 (460)
T ss_pred             EehhhhhhhhccCchhhhhhccCcc-cchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHH
Confidence            9999874321    11111110000 00000001126889999999999998765 48999998743 4566664442  


Q ss_pred             ----------cce---EEEEECCCCCEEEEEe
Q psy12911        304 ----------MSI---STCALNHNGQIFAYAV  322 (356)
Q Consensus       304 ----------~~v---~~~~~s~~~~~l~~~s  322 (356)
                                ..|   -.+.||.|.+.+.+|+
T Consensus       325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs  356 (460)
T COG5170         325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGS  356 (460)
T ss_pred             HHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence                      222   3578999999998887

>KOG0280|consensus

Probab=99.44  E-value=4.4e-11  Score=91.70  Aligned_cols=247  Identities=13%  Similarity=0.085  Sum_probs=159.2

Q ss_pred             CCCCeeEEEecCCCCCce-EEEEEeCCCeEEEEeccCCCceeeeeeccC---C---cceeEEEEccCCCeEEEEcCCCeE
Q psy12911         28 PEDSISCMAFSPSTLPQY-FLIAGSWDNNVRCWEVEPNGKTIPKSMQGM---S---EPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~---~---~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      -...+..+.|..-+.++. .|+-+..+|.|.++.......  ...+.+-   .   ....++.|++.+..++++..+|.+
T Consensus        68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s--s~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~  145 (339)
T KOG0280|consen   68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES--SVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSI  145 (339)
T ss_pred             cccccceeeeeeccCCccceeeeccccceEEEEeecccee--eeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcE
Confidence            345667777764332234 567777889999998765221  1222221   1   124578899999999999999999


Q ss_pred             EEEEcCCCcee---eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEE-EeC-CCeeEEEec---CCC
Q psy12911        101 KCWDLASNQSM---QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMT-INL-PERCYCADV---DYP  171 (356)
Q Consensus       101 ~vwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~-~~~-~~~~~~~~~---~~~  171 (356)
                      .+-+.....+.   ....|.-+++...|+- .+.+++.+|+.|+.+..||++.. +.+.. .+. ...+.++..   .+.
T Consensus       146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~-~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~  224 (339)
T KOG0280|consen  146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSD-KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT  224 (339)
T ss_pred             EEEecceeeeeecccccccceeeeeeeccc-CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence            96655544333   3678999999999984 55678999999999999999943 33333 222 233444443   345


Q ss_pred             eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC---Ccceeee
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK---DNFTFKC  248 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~---~~~~~~~  248 (356)
                      .+++|+.|..|++||.|+..+++...  ...+.|..+..+|..   ...++.++.-.-.+|-+......+   .....+.
T Consensus       225 ~I~TGsYDe~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~~---~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~  299 (339)
T KOG0280|consen  225 YIATGSYDECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPEI---FHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKI  299 (339)
T ss_pred             eEEEeccccceeeeehhcccCccccC--ccccceEEEEecchh---hhHHHHHHHhcCceEEEecccccchheeeecccc
Confidence            99999999999999999765544333  345889999999973   234455555555677777655444   2223334


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEEEEEc-CCCeEE-EEEcCcc
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG-SEGTFS-FWDKDAR  293 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~-iwd~~~~  293 (356)
                      |..           -...-.|.....+||+++ .|+.++ +|-.-++
T Consensus       300 hdS-----------l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  300 HDS-----------LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             ccc-----------eeeccccccccceeeeeeccccceeeeeeeccC
Confidence            433           344455533345677754 466644 6655444

>KOG0974|consensus

Probab=99.44  E-value=3.6e-11  Score=106.92  Aligned_cols=261  Identities=13%  Similarity=0.063  Sum_probs=173.0

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc----eeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEc
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK----TIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL  105 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  105 (356)
                      +++++.++-.     ++|+.|. --.|.+||+..+..    ...+.+..|...=.--.   .+.+++++..-+.+..=+.
T Consensus         8 ~~l~~~~~~~-----~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l---~~~~~v~~~~~~~v~~~~~   78 (967)
T KOG0974|consen    8 GPLNLPQLVS-----DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKL---LSGKIVTCAKSDEVYVKEA   78 (967)
T ss_pred             ccccchhhcc-----ceeeecC-CCceEEeeCCchhHhhhhhhhccccccccccccee---ccceEEEEEeecceeecch
Confidence            3445555443     2455554 34799999987321    11112223310000000   1234555544333333332


Q ss_pred             CCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEE-------ecCCCeEEEEec
Q psy12911        106 ASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCA-------DVDYPLAVVGTA  178 (356)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  178 (356)
                      .-.....+   ...+....+.  .+...++.++.++.+.+||...+..+..+.....+...       +...-++++|+.
T Consensus        79 ~~~~~~~~---s~wi~g~~l~--~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv  153 (967)
T KOG0974|consen   79 SNQIIERF---SDWIFGAKLF--EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV  153 (967)
T ss_pred             hhhhhhhc---cccccccchh--hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc
Confidence            22221122   2233334444  56677888888999999999988888888777754322       122237888899


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCc
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGV  258 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (356)
                      -+.|.+|+......+.  ....|.+.+-.+.++.+    +.++++.++|..+++|+++.... ...+.-+|..       
T Consensus       154 ~~~iivW~~~~dn~p~--~l~GHeG~iF~i~~s~d----g~~i~s~SdDRsiRlW~i~s~~~-~~~~~fgHsa-------  219 (967)
T KOG0974|consen  154 FGEIIVWKPHEDNKPI--RLKGHEGSIFSIVTSLD----GRYIASVSDDRSIRLWPIDSREV-LGCTGFGHSA-------  219 (967)
T ss_pred             cccEEEEeccccCCcc--eecccCCceEEEEEccC----CcEEEEEecCcceeeeecccccc-cCcccccccc-------
Confidence            9999999998443333  34478899999999999    89999999999999999987642 2235556665       


Q ss_pred             ccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCcc-ceEEEEECCCCCEEEEEeccC
Q psy12911        259 QDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDM-SISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       259 ~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~s~~d  325 (356)
                          .|+.+.|+|.  .+++++.|.+.++|+.+ ++.+..+..|.+ .|+.++..++...+++++.|.
T Consensus       220 ----Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds  280 (967)
T KOG0974|consen  220 ----RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS  280 (967)
T ss_pred             ----eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence                8999999998  99999999999999766 566668888865 799999998888888887655

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.43  E-value=1.5e-09  Score=89.31  Aligned_cols=234  Identities=12%  Similarity=0.031  Sum_probs=141.2

Q ss_pred             ecCCCCCceEEEEEeC----------CCeEEEEeccCCCceeeeeeccC-------CcceeEEEEccCCCeEEEEc-C-C
Q psy12911         37 FSPSTLPQYFLIAGSW----------DNNVRCWEVEPNGKTIPKSMQGM-------SEPVLDVAWIDDGTKVFMAG-C-D   97 (356)
Q Consensus        37 ~~~~~~~~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~-~-d   97 (356)
                      ++||+   +.|+++..          +..|.+||..+.  .....+..-       ......++++|||++|+... . +
T Consensus        53 ~spDg---~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~  127 (352)
T TIGR02658        53 VASDG---SFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS  127 (352)
T ss_pred             ECCCC---CEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCC
Confidence            99999   76666654          789999999983  333444321       22334789999999999776 3 7


Q ss_pred             CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-CCc-eEE---EeCC-----CeeEEEe
Q psy12911         98 KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-PQP-IMT---INLP-----ERCYCAD  167 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~~---~~~~-----~~~~~~~  167 (356)
                      ..|.+.|+.+++.+....-.+...-...   .+...++ -+.||......+.+ ++. ...   +...     .+. .+.
T Consensus       128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t---~e~~~~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~  202 (352)
T TIGR02658       128 PAVGVVDLEGKAFVRMMDVPDCYHIFPT---ANDTFFM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYS  202 (352)
T ss_pred             CEEEEEECCCCcEEEEEeCCCCcEEEEe---cCCccEE-EeecCceEEEEecCCCceEEeeeeeecCCccccccCC-ceE
Confidence            8999999999998874433332222222   2222222 23355544433322 221 111   1110     111 123


Q ss_pred             c-CCCeEEEEecCCeEEEEeCCCCccccccc----c------CcccccceEEEeecCCCCCCCeEEEeec----------
Q psy12911        168 V-DYPLAVVGTAGRGIVLYQLEGKPQEFKKT----E------SPLKYQNRCIAIFRDKKKQPAGYGLGSV----------  226 (356)
Q Consensus       168 ~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~----------  226 (356)
                      . ++..+++... |.|.+.|+..........    .      .-......-++++++    +..+.+...          
T Consensus       203 ~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d----g~~lyV~~~~~~~~thk~~  277 (352)
T TIGR02658       203 NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA----RDRIYLLADQRAKWTHKTA  277 (352)
T ss_pred             cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC----CCEEEEEecCCccccccCC
Confidence            3 4555555555 999999975543211111    0      012233445999999    566666431          


Q ss_pred             CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEEEc-CCCeEEEEEcCcceecCCC
Q psy12911        227 EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVG-SEGTFSFWDKDARTKLKPS  299 (356)
Q Consensus       227 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~  299 (356)
                      .+.|.++|....  +.+..+....            .+..++++||++ +|++.. .++.|.++|..+++.+..+
T Consensus       278 ~~~V~ViD~~t~--kvi~~i~vG~------------~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       278 SRFLFVVDAKTG--KRLRKIELGH------------EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCEEEEEECCCC--eEEEEEeCCC------------ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            235666665444  6666665433            689999999998 887666 5788999999999998887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.5e-10  Score=99.85  Aligned_cols=220  Identities=9%  Similarity=-0.050  Sum_probs=128.7

Q ss_pred             CCCCeeEEEecCCCCCceE---EEEEeCCC--eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC-----C
Q psy12911         28 PEDSISCMAFSPSTLPQYF---LIAGSWDN--NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-----D   97 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~---l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d   97 (356)
                      ....+.+-+|+|||   +.   +++...+|  .|.+.++..+....+..   ..+.....+|+|||+.|+..+.     +
T Consensus       183 ~~~~~~sP~wSPDG---~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~---~~g~~~~p~wSPDG~~Laf~s~~~g~~d  256 (428)
T PRK01029        183 EHSLSITPTWMHIG---SGFPYLYVSYKLGVPKIFLGSLENPAGKKILA---LQGNQLMPTFSPRKKLLAFISDRYGNPD  256 (428)
T ss_pred             CCCCcccceEccCC---CceEEEEEEccCCCceEEEEECCCCCceEeec---CCCCccceEECCCCCEEEEEECCCCCcc
Confidence            45566788999998   53   33444444  57777777643333333   3445567899999998887653     2


Q ss_pred             CeEEEEEcCCC---ceeeeccc-CCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEe--CCC-CCceEEEeCCCeeEEEecC
Q psy12911         98 KTVKCWDLASN---QSMQVAQH-DAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWD--LRT-PQPIMTINLPERCYCADVD  169 (356)
Q Consensus        98 g~i~vwd~~~~---~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd--~~~-~~~~~~~~~~~~~~~~~~~  169 (356)
                      -.+.+|++..+   +...+... ........|+  |||+.|+..+ .+|...+|.  +.. +.....+.           
T Consensus       257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS--PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-----------  323 (428)
T PRK01029        257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS--PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-----------  323 (428)
T ss_pred             eeEEEeecccCCCCcceEeecCCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECcccccceEEec-----------
Confidence            23445777653   33333322 2345678999  9999877665 345444443  211 01011000           


Q ss_pred             CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC---CeEEEEEeCCCCCCCccee
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE---GRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d---g~i~i~~~~~~~~~~~~~~  246 (356)
                                                    .....+....|+|+    +..++....+   ..|.+||+..+...   .+
T Consensus       324 ------------------------------~~~~~~~~p~wSPD----G~~Laf~~~~~g~~~I~v~dl~~g~~~---~L  366 (428)
T PRK01029        324 ------------------------------KKYRNSSCPAWSPD----GKKIAFCSVIKGVRQICVYDLATGRDY---QL  366 (428)
T ss_pred             ------------------------------cCCCCccceeECCC----CCEEEEEEcCCCCcEEEEEECCCCCeE---Ec
Confidence                                          11224456788999    6777665543   35788887665322   22


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC---CCeEEEEEcCcceecCCCCCCccceEEEEECCCC
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS---EGTFSFWDKDARTKLKPSEAMDMSISTCALNHNG  315 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  315 (356)
                      .....           .+....|+|||++|+..+.   ...|+++|+.+++...... ..+.+...+|+|-.
T Consensus       367 t~~~~-----------~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~  426 (428)
T PRK01029        367 TTSPE-----------NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGAFP  426 (428)
T ss_pred             cCCCC-----------CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence            21111           4567899999988775432   3578899998776543332 34556778888754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.36  E-value=2.6e-08  Score=79.26  Aligned_cols=268  Identities=15%  Similarity=0.159  Sum_probs=173.1

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCC---CeEEEEeccCC-C-ceeeeeeccCCcceeEEEEccCCCeEEEEcC-CCeE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWD---NNVRCWEVEPN-G-KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTV  100 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~-~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i  100 (356)
                      .+.+..+-|+|+|++   ++|.++..+   |.|.-|.++.. | ...+........+-..++++++|++|+++.. -|.|
T Consensus        37 ~~~~nptyl~~~~~~---~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v  113 (346)
T COG2706          37 AELGNPTYLAVNPDQ---RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSV  113 (346)
T ss_pred             cccCCCceEEECCCC---CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceE
Confidence            456788899999998   899988654   77888888763 2 2222222223344488999999999999877 6899


Q ss_pred             EEEEcCC-Ccee---eecccCCC----------eeEEEEEeCCCCCeEEEEEC-CCeEEEEeCCCCCceEEE----e--C
Q psy12911        101 KCWDLAS-NQSM---QVAQHDAP----------VKTCHWIKAPNYTCLMTGSW-DKTLKFWDLRTPQPIMTI----N--L  159 (356)
Q Consensus       101 ~vwd~~~-~~~~---~~~~~~~~----------v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~----~--~  159 (356)
                      .++-++. |.+.   ....|.+.          +....+.  |++++|++.+- --.|.+|++..++....-    +  .
T Consensus       114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t--P~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~  191 (346)
T COG2706         114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT--PDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA  191 (346)
T ss_pred             EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC--CCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence            9999865 4432   24445554          7788888  99999988763 236999999977543222    1  1


Q ss_pred             CCeeEEEecCCCeEEEEec-CCeEEEEeCCCCccccccc------cCcc--cccceEEEeecCCCCCCCeEEEeec-CCe
Q psy12911        160 PERCYCADVDYPLAVVGTA-GRGIVLYQLEGKPQEFKKT------ESPL--KYQNRCIAIFRDKKKQPAGYGLGSV-EGR  229 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~------~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~-dg~  229 (356)
                      ..+-+.+.+++++.++.+. +++|.+|..+.....+..+      ....  ......|.++++    +++|.++.. ...
T Consensus       192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d----GrFLYasNRg~ds  267 (346)
T COG2706         192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD----GRFLYASNRGHDS  267 (346)
T ss_pred             CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC----CCEEEEecCCCCe
Confidence            2256788888887776655 8999999998753222211      1112  234567888888    666666543 346


Q ss_pred             EEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-CeEEEEEcC--cceecCCCC-CCccc
Q psy12911        230 VAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-GTFSFWDKD--ARTKLKPSE-AMDMS  305 (356)
Q Consensus       230 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-g~i~iwd~~--~~~~~~~~~-~~~~~  305 (356)
                      |.+|.++....+  ..+........       ..-+...|+|.|++|+++..+ ..|.+|.++  +|++-.... .....
T Consensus       268 I~~f~V~~~~g~--L~~~~~~~teg-------~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~  338 (346)
T COG2706         268 IAVFSVDPDGGK--LELVGITPTEG-------QFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPE  338 (346)
T ss_pred             EEEEEEcCCCCE--EEEEEEeccCC-------cCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCC
Confidence            777777765433  22222211000       035788999999999988876 468888654  555433332 23334


Q ss_pred             eEEEEEC
Q psy12911        306 ISTCALN  312 (356)
Q Consensus       306 v~~~~~s  312 (356)
                      ..||.|.
T Consensus       339 Pvcv~f~  345 (346)
T COG2706         339 PVCVKFL  345 (346)
T ss_pred             cEEEEEc
Confidence            5566664

>KOG1064|consensus

Probab=99.36  E-value=1.2e-11  Score=115.69  Aligned_cols=203  Identities=17%  Similarity=0.233  Sum_probs=154.2

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      ...+.|-..|.++.=+|..   .+-+||+.||.|++|....+.........+. ..|+.+.|+.+|+.+..+..||.+.+
T Consensus      2202 ~~~k~~v~~v~r~~sHp~~---~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSD---PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred             eEeecccCceeeecCCCCC---ceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceee
Confidence            4455667789999999998   8999999999999999877444333333444 89999999999999999999999999


Q ss_pred             EEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEE---CCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecC
Q psy12911        103 WDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGS---WDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAG  179 (356)
Q Consensus       103 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  179 (356)
                      |.+...-......|.....+..|.  .  ..+++++   .++.+.+||..-.....-                       
T Consensus      2278 ~q~~pk~~~s~qchnk~~~Df~Fi--~--s~~~tag~s~d~~n~~lwDtl~~~~~s~----------------------- 2330 (2439)
T KOG1064|consen 2278 WQASPKPYTSWQCHNKALSDFRFI--G--SLLATAGRSSDNRNVCLWDTLLPPMNSL----------------------- 2330 (2439)
T ss_pred             cccCCcceeccccCCccccceeee--e--hhhhccccCCCCCcccchhcccCcccce-----------------------
Confidence            999855555578899999999997  4  5677765   457788888533211110                       


Q ss_pred             CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcc
Q psy12911        180 RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQ  259 (356)
Q Consensus       180 ~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (356)
                                       +...|.+..+++++.|.    ...+++|+.+|.+++||++..  +..+.++            
T Consensus      2331 -----------------v~~~H~~gaT~l~~~P~----~qllisggr~G~v~l~D~rqr--ql~h~~~------------ 2375 (2439)
T KOG1064|consen 2331 -----------------VHTCHDGGATVLAYAPK----HQLLISGGRKGEVCLFDIRQR--QLRHTFQ------------ 2375 (2439)
T ss_pred             -----------------eeeecCCCceEEEEcCc----ceEEEecCCcCcEEEeehHHH--HHHHHhh------------
Confidence                             11246778899999998    688999999999999999765  3333332            


Q ss_pred             cccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC
Q psy12911        260 DIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE  300 (356)
Q Consensus       260 ~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  300 (356)
                          .    +. ...++++|+..|.|+||++..-..++.+.
T Consensus      2376 ----~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2376 ----A----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             ----h----hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence                1    33 45789999999999999998877776664

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.35  E-value=6.7e-10  Score=95.14  Aligned_cols=247  Identities=13%  Similarity=0.092  Sum_probs=145.0

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCee---
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVK---  121 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~---  121 (356)
                      ..+++++.++.+..+|..++. .. .... ....+.+.... .+..++.++.++.|..||.++++.+.......+..   
T Consensus       106 ~~v~v~~~~g~l~ald~~tG~-~~-W~~~-~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~  181 (377)
T TIGR03300       106 GLVFVGTEKGEVIALDAEDGK-EL-WRAK-LSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR  181 (377)
T ss_pred             CEEEEEcCCCEEEEEECCCCc-Ee-eeec-cCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence            456667777777777776632 22 1111 11222211111 24567777788999999999988765332222211   


Q ss_pred             ---EEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe------------eEEEecCCCeEEEEecCCeEEEEe
Q psy12911        122 ---TCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER------------CYCADVDYPLAVVGTAGRGIVLYQ  186 (356)
Q Consensus       122 ---~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~d~~i~i~d  186 (356)
                         +...   .+ ..++.+..++.+..+|+++++.+........            .......++.+++++.++.+..+|
T Consensus       182 ~~~sp~~---~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d  257 (377)
T TIGR03300       182 GSASPVI---AD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD  257 (377)
T ss_pred             CCCCCEE---EC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence               1122   22 4677788889999999999987765442110            011122356888889999999999


Q ss_pred             CCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE
Q psy12911        187 LEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG  266 (356)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (356)
                      ..+++.......   . .......  .    +..+++++.+|.+..+|...+  +.+.........          ....
T Consensus       258 ~~tG~~~W~~~~---~-~~~~p~~--~----~~~vyv~~~~G~l~~~d~~tG--~~~W~~~~~~~~----------~~ss  315 (377)
T TIGR03300       258 LRSGRVLWKRDA---S-SYQGPAV--D----DNRLYVTDADGVVVALDRRSG--SELWKNDELKYR----------QLTA  315 (377)
T ss_pred             CCCCcEEEeecc---C-CccCceE--e----CCEEEEECCCCeEEEEECCCC--cEEEccccccCC----------cccc
Confidence            988754332221   1 1111122  2    457888889999999998765  333333111100          1222


Q ss_pred             EEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        267 IVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       267 i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                      ...  .+..|++++.+|.|+++|..+|+.+.+++.+...+..--...+++ |+.++.+
T Consensus       316 p~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~~d  370 (377)
T TIGR03300       316 PAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQTRD  370 (377)
T ss_pred             CEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCE-EEEEeCC
Confidence            222  367888999999999999999999888876554433222223444 5555544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.34  E-value=4.7e-09  Score=99.77  Aligned_cols=248  Identities=9%  Similarity=0.037  Sum_probs=157.5

Q ss_pred             eEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeecc--------------CCcceeEEEEccCCCeEEEEcC-C
Q psy12911         33 SCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQG--------------MSEPVLDVAWIDDGTKVFMAGC-D   97 (356)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~~-d   97 (356)
                      ..+++++.+  +.++++-+.++.|++||...  ... ..+.+              .-.....+++.++++.|+.+.. .
T Consensus       571 ~gvavd~~~--g~lyVaDs~n~rI~v~d~~G--~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n  645 (1057)
T PLN02919        571 GKLAIDLLN--NRLFISDSNHNRIVVTDLDG--NFI-VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN  645 (1057)
T ss_pred             ceEEEECCC--CeEEEEECCCCeEEEEeCCC--CEE-EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence            467888754  26777777888999999864  222 22211              1123578999998887666544 5


Q ss_pred             CeEEEEEcCCCceeeeccc-----------------CCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEEeC
Q psy12911         98 KTVKCWDLASNQSMQVAQH-----------------DAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTINL  159 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~~~-----------------~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  159 (356)
                      +.|+++|+.++....+.+.                 -.....++++  + ++.++++.+.++.|++||..++... .+.+
T Consensus       646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d--p~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G  722 (1057)
T PLN02919        646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE--PVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG  722 (1057)
T ss_pred             ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe--cCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence            7899999887765433210                 1123578998  7 6667777778899999998776432 2211


Q ss_pred             ------------------CCeeEEEecCCCeEE-EEecCCeEEEEeCCCCccccccc------------c-------Ccc
Q psy12911        160 ------------------PERCYCADVDYPLAV-VGTAGRGIVLYQLEGKPQEFKKT------------E-------SPL  201 (356)
Q Consensus       160 ------------------~~~~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~------------~-------~~~  201 (356)
                                        ....+++++++..++ +-+.++.|++||+.++.......            .       ...
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~  802 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL  802 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence                              112356677777454 45567999999998654211100            0       001


Q ss_pred             cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC---CCcccccceEEEEEeCCCCEEEE
Q psy12911        202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA---GGVQDIYAVNGIVFHPVHGTLAT  278 (356)
Q Consensus       202 ~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~i~~sp~~~~l~s  278 (356)
                      -.....+++.++    +..+++-..++.|++||.+...   +.++.+.......   ...........++++++|+++++
T Consensus       803 l~~P~Gvavd~d----G~LYVADs~N~rIrviD~~tg~---v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa  875 (1057)
T PLN02919        803 LQHPLGVLCAKD----GQIYVADSYNHKIKKLDPATKR---VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA  875 (1057)
T ss_pred             ccCCceeeEeCC----CcEEEEECCCCEEEEEECCCCe---EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence            123468888888    7788888899999999987542   2222221100000   00111124678999999999999


Q ss_pred             EcCCCeEEEEEcCccee
Q psy12911        279 VGSEGTFSFWDKDARTK  295 (356)
Q Consensus       279 ~~~dg~i~iwd~~~~~~  295 (356)
                      -+.+++|++||+.+++.
T Consensus       876 Dt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        876 DTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCcc
Confidence            99999999999988754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.34  E-value=1.3e-09  Score=89.37  Aligned_cols=144  Identities=12%  Similarity=0.087  Sum_probs=112.1

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCC-eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDN-NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK  101 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  101 (356)
                      .+.-+|.+.|.-..+.-++   +-++.|..|| .+-|+|.+++   ..+.+...-+.|.++..+++|++++.+-....+.
T Consensus       353 ~iqv~~~~~VrY~r~~~~~---e~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~  426 (668)
T COG4946         353 SIQVGKKGGVRYRRIQVDP---EGDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELW  426 (668)
T ss_pred             eEEcCCCCceEEEEEccCC---cceEEeccCCceEEEEecCCc---eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence            3445788889999998888   7899999999 8999999873   2345666678999999999999999999899999


Q ss_pred             EEEcCCCceeee-cccCCCeeEEEEEeCCCCCeEEEEECCC----eEEEEeCCCCCceEEEeC--CCeeEEEecCCCeEE
Q psy12911        102 CWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDK----TLKFWDLRTPQPIMTINL--PERCYCADVDYPLAV  174 (356)
Q Consensus       102 vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~  174 (356)
                      +.|+.++..... ....+-|+...|+  |+++.+|.+--+|    .|+++|+..++....-..  +.-.-++++++.+|.
T Consensus       427 vididngnv~~idkS~~~lItdf~~~--~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         427 VIDIDNGNVRLIDKSEYGLITDFDWH--PNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             EEEecCCCeeEecccccceeEEEEEc--CCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence            999999987663 4456789999999  9999999887765    589999988775544332  223344455555443

>KOG1409|consensus

Probab=99.33  E-value=5.3e-10  Score=87.77  Aligned_cols=158  Identities=17%  Similarity=0.223  Sum_probs=115.4

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC--CceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN--GKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  106 (356)
                      ..+++++.+.++.   ..|++|-.+|++.-+.+...  .....+....|...|..+-|+.....+++.+.|..+.---.+
T Consensus        68 P~~~~~~~y~~e~---~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e  144 (404)
T KOG1409|consen   68 PSPCSAMEYVSES---RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE  144 (404)
T ss_pred             CCCceEeeeeccc---eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeec
Confidence            4688999999998   99999999999999887542  234445667799999999998877788887776554322111


Q ss_pred             CC-----------------------------c-------------eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEE
Q psy12911        107 SN-----------------------------Q-------------SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLK  144 (356)
Q Consensus       107 ~~-----------------------------~-------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~  144 (356)
                      .+                             +             ..++.+|...+.++.|.  +...++++|..|..+.
T Consensus       145 ~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd--~~~~~LfSg~~d~~vi  222 (404)
T KOG1409|consen  145 SGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD--PGQRLLFSGASDHSVI  222 (404)
T ss_pred             cCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc--CCCcEEEeccccCceE
Confidence            11                             0             12356799999999999  8889999999999999


Q ss_pred             EEeCCCCCce-EEEeCCC-ee--EEEecCCCeEEEEecCCeEEEEeCCCCc
Q psy12911        145 FWDLRTPQPI-MTINLPE-RC--YCADVDYPLAVVGTAGRGIVLYQLEGKP  191 (356)
Q Consensus       145 iwd~~~~~~~-~~~~~~~-~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~~  191 (356)
                      +||+--.+-+ ..+.++. .+  ++....-..+++++.||.|.+|+++...
T Consensus       223 ~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  223 MWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             EEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            9999765433 3333333 22  2222333588999999999999997653

>KOG4190|consensus

Probab=99.32  E-value=2.3e-11  Score=101.32  Aligned_cols=274  Identities=13%  Similarity=0.167  Sum_probs=172.9

Q ss_pred             eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc-----eeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK-----TIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      +..+.||+..|..++--.+.   +-+++++.|++|++|.++..+.     ....+++.|+.+|.++.|-.+-++++++  
T Consensus       728 L~nf~GH~~~iRai~AidNE---NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--  802 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNE---NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--  802 (1034)
T ss_pred             eecccCcHHHhHHHHhcccc---cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence            34567999999999877776   8899999999999999976442     2346788999999999999988888775  


Q ss_pred             CCeEEEEEcCCCceee-e--cccCCCeeEEEEEeCCCCCeEEEE-ECCCeEEEEeCCCCCceEEEeCC--------CeeE
Q psy12911         97 DKTVKCWDLASNQSMQ-V--AQHDAPVKTCHWIKAPNYTCLMTG-SWDKTLKFWDLRTPQPIMTINLP--------ERCY  164 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~--------~~~~  164 (356)
                      ||-|.+||.--+..+. .  ....+.+..+...+.-+..+++.+ +...+|+++|.+..+....++..        .+++
T Consensus       803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i  882 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI  882 (1034)
T ss_pred             cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence            7899999988777654 1  112233333333322355555554 77889999999998876666532        2577


Q ss_pred             EEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE-EEeCCCCCCCc
Q psy12911        165 CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI-QYVNPANPKDN  243 (356)
Q Consensus       165 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i-~~~~~~~~~~~  243 (356)
                      .+...++.++++-..|.|.+.|.+++.......  +.......++- |.    ...++....|..+.+ |..-.+  ...
T Consensus       883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswr--pmecdllqlaa-ps----dq~L~~saldHslaVnWhaldg--imh  953 (1034)
T KOG4190|consen  883 AVADKGNKLAAALSNGCIAILDARNGKVINSWR--PMECDLLQLAA-PS----DQALAQSALDHSLAVNWHALDG--IMH  953 (1034)
T ss_pred             EeccCcchhhHHhcCCcEEEEecCCCceeccCC--cccchhhhhcC-ch----hHHHHhhcccceeEeeehhcCC--eee
Confidence            888899999999999999999999985332211  12222222222 11    345666666777766 543222  111


Q ss_pred             ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc----eecCCCC--CCccceEEEEECCCCCE
Q psy12911        244 FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR----TKLKPSE--AMDMSISTCALNHNGQI  317 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~--~~~~~v~~~~~s~~~~~  317 (356)
                      ...+....           +..-+  -.-|.-|+++.....+.+|--...    ..+..++  ...+..++++--|-..-
T Consensus       954 ~q~kpppe-----------pahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~a 1020 (1034)
T KOG4190|consen  954 LQDKPPPE-----------PAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCA 1020 (1034)
T ss_pred             eccCCCCc-----------chhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccch
Confidence            11111111           11101  112567777777777888852210    1111222  23456677777776665


Q ss_pred             EEEEe
Q psy12911        318 FAYAV  322 (356)
Q Consensus       318 l~~~s  322 (356)
                      +..|.
T Consensus      1021 fLaGn 1025 (1034)
T KOG4190|consen 1021 FLAGN 1025 (1034)
T ss_pred             hhccC
Confidence            55554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.31  E-value=1.1e-08  Score=84.19  Aligned_cols=104  Identities=15%  Similarity=0.123  Sum_probs=80.1

Q ss_pred             cceEEEeecCCCCCCCeEEEeecCC-eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC
Q psy12911        204 QNRCIAIFRDKKKQPAGYGLGSVEG-RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE  282 (356)
Q Consensus       204 ~i~~~~~~~~~~~~~~~~~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d  282 (356)
                      .|.-..+..+    +..++.|..|| .+-|++.+...   ...+...-+           .|.++..+|+|++++.+...
T Consensus       361 ~VrY~r~~~~----~e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg-----------~I~av~vs~dGK~~vvaNdr  422 (668)
T COG4946         361 GVRYRRIQVD----PEGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLG-----------NIEAVKVSPDGKKVVVANDR  422 (668)
T ss_pred             ceEEEEEccC----CcceEEeccCCceEEEEecCCce---EEEeeCCcc-----------ceEEEEEcCCCcEEEEEcCc
Confidence            3444444444    55788888888 78888887653   233333333           79999999999999999999


Q ss_pred             CeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        283 GTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       283 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ..|.+.|+.+|+....-+...+-|+..+|||+++++|.+--++
T Consensus       423 ~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~g  465 (668)
T COG4946         423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEG  465 (668)
T ss_pred             eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcc
Confidence            9999999999987655555678899999999999999997655

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.31  E-value=8.7e-09  Score=96.25  Aligned_cols=274  Identities=14%  Similarity=0.125  Sum_probs=176.9

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEE----eccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCW----EVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  103 (356)
                      ..+.|.++.|-++.   ..++.+..+|.|.+.    +......   .....-...|.+++||||+..|+....++++.+-
T Consensus        74 ~~~~ivs~~yl~d~---~~l~~~~~~Gdi~~~~~~~~~~~~~~---E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m  147 (928)
T PF04762_consen   74 PNDKIVSFQYLADS---ESLCIALASGDIILVREDPDPDEDEI---EIVGSVDSGILAASWSPDEELLALVTGEGNLLLM  147 (928)
T ss_pred             CCCcEEEEEeccCC---CcEEEEECCceEEEEEccCCCCCcee---EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence            45689999999998   889999999999999    5444222   2233346799999999999999999988888876


Q ss_pred             EcC----C---------C--c---------eeeecc------------------------cCCCeeEEEEEeCCCCCeEE
Q psy12911        104 DLA----S---------N--Q---------SMQVAQ------------------------HDAPVKTCHWIKAPNYTCLM  135 (356)
Q Consensus       104 d~~----~---------~--~---------~~~~~~------------------------~~~~v~~~~~~~~~~~~~l~  135 (356)
                      +-.    .         +  +         ..++.+                        ....-..|+|-  .||.+++
T Consensus       148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWR--GDG~yFA  225 (928)
T PF04762_consen  148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWR--GDGEYFA  225 (928)
T ss_pred             eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEEC--CCCcEEE
Confidence            421    0         0  0         001100                        22344568888  9999999


Q ss_pred             EEEC---C---CeEEEEeCCCCCceEEEe---CCCeeEEEecCCCeEEEEec---CCeEEEEeCCCCccccccc-cCccc
Q psy12911        136 TGSW---D---KTLKFWDLRTPQPIMTIN---LPERCYCADVDYPLAVVGTA---GRGIVLYQLEGKPQEFKKT-ESPLK  202 (356)
Q Consensus       136 ~~~~---d---g~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~-~~~~~  202 (356)
                      +.+.   .   +.+|||+ +.|+...+-+   +-...+++.+.|+++++...   ...|.+|.-++-....... ..+..
T Consensus       226 Vss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~  304 (928)
T PF04762_consen  226 VSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEE  304 (928)
T ss_pred             EEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCC
Confidence            8875   2   5799999 4465433332   22357788888888888765   4667777766543221111 12445


Q ss_pred             ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcC
Q psy12911        203 YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGS  281 (356)
Q Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~  281 (356)
                      ..+..+.|+++    +..|++...|. |.+|-..+...-..+.+......          .+..+.|+|.. ..|...+.
T Consensus       305 ~~v~~l~Wn~d----s~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~----------~~~~~~Wdpe~p~~L~v~t~  369 (928)
T PF04762_consen  305 EKVIELAWNSD----SEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSE----------SVNFVKWDPEKPLRLHVLTS  369 (928)
T ss_pred             ceeeEEEECCC----CCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCC----------CCCceEECCCCCCEEEEEec
Confidence            67899999999    78888877555 99998877654334444432221          34558898865 44555555


Q ss_pred             CCeEEEEEcC----cc----------------ee--cCCCC-------------CCccceEEEEECCCCCEEEEEeccC
Q psy12911        282 EGTFSFWDKD----AR----------------TK--LKPSE-------------AMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       282 dg~i~iwd~~----~~----------------~~--~~~~~-------------~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +|.+..++..    .+                ..  +..|+             ....+|.+++|++++..+++-..++
T Consensus       370 ~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~  448 (928)
T PF04762_consen  370 NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDG  448 (928)
T ss_pred             CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCC
Confidence            5655554421    11                10  00010             1256799999999998776666555

>KOG4547|consensus

Probab=99.30  E-value=8.5e-10  Score=92.59  Aligned_cols=184  Identities=14%  Similarity=0.171  Sum_probs=137.9

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeec---cCCcceeEEEEc--------------------cCCCeEEEEcCCCeEE
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQ---GMSEPVLDVAWI--------------------DDGTKVFMAGCDKTVK  101 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~~~~~v~~~~~s--------------------~~~~~l~~~~~dg~i~  101 (356)
                      .++|....||.+++|+...+..  ...+.   .-++..++..|.                    .+...++-|...|.|.
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~~--~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQL--QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             heEeecCCCCeEEEEEccCcee--eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            7999999999999999987432  22222   123344444442                    1334677777899999


Q ss_pred             EEEcCCCceee---ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEec
Q psy12911        102 CWDLASNQSMQ---VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTA  178 (356)
Q Consensus       102 vwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (356)
                      +|++..++...   ...|.+.|.++.++  .+-..|.+++.|+.+..|+....+.++....                   
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-------------------  142 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKE-------------------  142 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeecc-------------------
Confidence            99999999876   24699999999998  8888999999999999999887765554432                   


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCc
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGV  258 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (356)
                                            ....+.+++++||    +..+++++  +.|++|+++..  +.+.+|.+|.+       
T Consensus       143 ----------------------~~~~~~sl~is~D----~~~l~~as--~~ik~~~~~~k--evv~~ftgh~s-------  185 (541)
T KOG4547|consen  143 ----------------------QKPLVSSLCISPD----GKILLTAS--RQIKVLDIETK--EVVITFTGHGS-------  185 (541)
T ss_pred             ----------------------CCCccceEEEcCC----CCEEEecc--ceEEEEEccCc--eEEEEecCCCc-------
Confidence                                  1234678888998    66777665  57999999877  78899999998       


Q ss_pred             ccccceEEEEEeCC-----CCEEEE-EcCCCeEEEEEcCc
Q psy12911        259 QDIYAVNGIVFHPV-----HGTLAT-VGSEGTFSFWDKDA  292 (356)
Q Consensus       259 ~~~~~i~~i~~sp~-----~~~l~s-~~~dg~i~iwd~~~  292 (356)
                          +|++++|--+     |.++.+ ...+..+.+|-+..
T Consensus       186 ----~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  186 ----PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ----ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence                9999999876     555554 44566688887654

>KOG2041|consensus

Probab=99.29  E-value=3.6e-10  Score=97.11  Aligned_cols=235  Identities=12%  Similarity=0.062  Sum_probs=161.7

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      ...-+++.||++.|.-+.|+...   +.|-+...+|.|.||-+-.+.......-...++-|.+++|+.||..++....||
T Consensus        61 LsmNQtLeGH~~sV~vvTWNe~~---QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDG  137 (1189)
T KOG2041|consen   61 LSMNQTLEGHNASVMVVTWNENN---QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDG  137 (1189)
T ss_pred             cchhhhhccCcceEEEEEecccc---ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccC
Confidence            34456789999999999999998   889999999999999998755433333445677899999999999999999999


Q ss_pred             eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-------CceEEEeC-----C------
Q psy12911         99 TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-------QPIMTINL-----P------  160 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~-----~------  160 (356)
                      .|.|=.++..+.....-.......+.|+  +|.+.++.+-.+|.+.+||....       .+.....+     +      
T Consensus       138 avIVGsvdGNRIwgKeLkg~~l~hv~ws--~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i  215 (1189)
T KOG2041|consen  138 AVIVGSVDGNRIWGKELKGQLLAHVLWS--EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEI  215 (1189)
T ss_pred             CEEEEeeccceecchhcchheccceeec--ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccce
Confidence            9998887765543211122334578899  99998888888999999996532       11111110     1      


Q ss_pred             ----CeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC--------
Q psy12911        161 ----ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG--------  228 (356)
Q Consensus       161 ----~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg--------  228 (356)
                          +....+.++.+.++++...|.+.+-.-.+...+....   ....+....|+++    |..+++++.+.        
T Consensus       216 ~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d---tgm~~vgakWnh~----G~vLAvcG~~~da~~~~d~  288 (1189)
T KOG2041|consen  216 EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD---TGMKIVGAKWNHN----GAVLAVCGNDSDADEPTDS  288 (1189)
T ss_pred             eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe---cccEeecceecCC----CcEEEEccCcccccCcccc
Confidence                1122233455689999999999887766654433322   2366788999999    88899887653        


Q ss_pred             -eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE
Q psy12911        229 -RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV  279 (356)
Q Consensus       229 -~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~  279 (356)
                       .|.+|..-   +..+.+++....           .|++++|-..|-.+|.+
T Consensus       289 n~v~Fysp~---G~i~gtlkvpg~-----------~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  289 NKVHFYSPY---GHIVGTLKVPGS-----------CITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             ceEEEeccc---hhheEEEecCCc-----------eeeeeEEcCCceEEEEE
Confidence             23333221   134455555444           68888887666444433

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.28  E-value=3.2e-09  Score=87.79  Aligned_cols=278  Identities=10%  Similarity=0.068  Sum_probs=169.7

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-------
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-------   97 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------   97 (356)
                      +..-.-++..++|||.|   .+|++.... .|.+|.-...+ .+ ..+.  ...|..+.|+|++++|.+=+..       
T Consensus        28 ~~~~~~p~~~~~~SP~G---~~l~~~~~~-~V~~~~g~~~~-~l-~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~   99 (561)
T COG5354          28 FESENWPVAYVSESPLG---TYLFSEHAA-GVECWGGPSKA-KL-VRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEI   99 (561)
T ss_pred             ccccCcchhheeecCcc---hheehhhcc-ceEEccccchh-he-eeee--cCCceecccCcccceeeeeccCCccChhh
Confidence            33456689999999999   888887755 59999987744 22 3332  3579999999999999986543       


Q ss_pred             --------CeEEEEEcCCCceee-ecccCCC--ee-EEEEEeCCCCCeEEEEECCCeEEEEeCCCCC----ceEEEe-CC
Q psy12911         98 --------KTVKCWDLASNQSMQ-VAQHDAP--VK-TCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ----PIMTIN-LP  160 (356)
Q Consensus        98 --------g~i~vwd~~~~~~~~-~~~~~~~--v~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~-~~  160 (356)
                              +.+.+||+.++.++. +.....+  .+ -+.|+  .+..+++-. ....+.|+++ ++.    +...+. .+
T Consensus       100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s--~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~g  175 (561)
T COG5354         100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFS--IDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVG  175 (561)
T ss_pred             ccCCccccCceeEEeccCceeEeeccccCCcccccceeeee--ecchhhhhh-ccCeEEEEec-CCccccCchhhccccc
Confidence                    359999999999886 4333333  44 67888  776666554 3457999997 332    222222 11


Q ss_pred             CeeEEEecCC--CeEEE-----EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee--------
Q psy12911        161 ERCYCADVDY--PLAVV-----GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS--------  225 (356)
Q Consensus       161 ~~~~~~~~~~--~~~~~-----~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------  225 (356)
                      -.-+.+++.+  +.++.     ....+++++|.+..+.......  -....-..+.|.+.    +.++++-.        
T Consensus       176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~--lfk~~~~qLkW~~~----g~~ll~l~~t~~ksnK  249 (561)
T COG5354         176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN--LFKVSGVQLKWQVL----GKYLLVLVMTHTKSNK  249 (561)
T ss_pred             eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--eEeecccEEEEecC----CceEEEEEEEeeeccc
Confidence            2233444442  23333     3456788888887543222111  12233345666666    33333221        


Q ss_pred             ---cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE--cCCCeEEEEEcCcceecCCCC
Q psy12911        226 ---VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV--GSEGTFSFWDKDARTKLKPSE  300 (356)
Q Consensus       226 ---~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~  300 (356)
                         ....++++++.....   .....-.+           +|...+|.|+++.+++.  -.+-.+.++|++.. ....+.
T Consensus       250 syfgesnLyl~~~~e~~i---~V~~~~~~-----------pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P  314 (561)
T COG5354         250 SYFGESNLYLLRITERSI---PVEKDLKD-----------PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP  314 (561)
T ss_pred             ceeccceEEEEeeccccc---ceeccccc-----------cceeeeecccCCceeEEecccccceeecccccc-eEEecC
Confidence               234577777764321   11112233           89999999998766654  46788999998854 333222


Q ss_pred             CCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCC
Q psy12911        301 AMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNK  337 (356)
Q Consensus       301 ~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~  337 (356)
                        ...=+.+.|||.+++++.++-+.-.-..++|++..
T Consensus       315 --e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~  349 (561)
T COG5354         315 --EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             --CcccccccccCcccEEEEecCCccccceEEeccCC
Confidence              33335566777777777776444444455566553

>KOG2315|consensus

Probab=99.28  E-value=9e-09  Score=86.12  Aligned_cols=283  Identities=12%  Similarity=0.093  Sum_probs=171.5

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-----cC-----CC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-----GC-----DK   98 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-----~~-----dg   98 (356)
                      ....+..+++++|   +++|.+. +..++|++..... ..+...   ...++++.|+|-|.+|.+=     ..     .-
T Consensus        34 ~~~~~v~~~S~~G---~lfA~~~-~~~v~i~~~~~~~-~~lt~~---~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p  105 (566)
T KOG2315|consen   34 SRPCNVFAYSNNG---RLFAYSD-NQVVKVFEIATLK-VVLCVE---LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNP  105 (566)
T ss_pred             CCcceeEEEcCCC---cEEEEEc-CCeEEEEEccCCc-EEEEec---cceeeeeeecccccccccccccccccCCCCCCC
Confidence            3447788899998   7777665 6799999998743 222222   2288999999999988762     11     24


Q ss_pred             eEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce-EEEeCC-CeeEEEecCC--CeE
Q psy12911         99 TVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI-MTINLP-ERCYCADVDY--PLA  173 (356)
Q Consensus        99 ~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~-~~~~~~~~~~--~~~  173 (356)
                      .+.+|+++++.... +......-++..|+  .|..+ ++--..+.+.+|++...+.+ ..+... ...+.+++.+  ..+
T Consensus       106 n~~v~~vet~~~~s~~q~k~Q~~W~~qfs--~dEsl-~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~v  182 (566)
T KOG2315|consen  106 NVLVYNVETGVQRSQIQKKMQNGWVPQFS--IDESL-AARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFV  182 (566)
T ss_pred             ceeeeeeccceehhheehhhhcCcccccc--cchhh-hhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceE
Confidence            57799999954443 22222222788898  66543 33334578999998875433 233322 2345555553  244


Q ss_pred             EE-----EecCCeEEEEeCCCCcc-ccccccCcccccceEEEeecCCCCCCCeEEEeec-----------CCeEEEEEeC
Q psy12911        174 VV-----GTAGRGIVLYQLEGKPQ-EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV-----------EGRVAIQYVN  236 (356)
Q Consensus       174 ~~-----~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----------dg~i~i~~~~  236 (356)
                      ++     .+.-..+++|....... .......-....-..+.|.+-+   ..+|+.++.           +..+++.+++
T Consensus       183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~g---t~LLvLastdVDktn~SYYGEq~Lyll~t~  259 (566)
T KOG2315|consen  183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLG---TALLVLASTDVDKTNASYYGEQTLYLLATQ  259 (566)
T ss_pred             EEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCC---ceEEEEEEEeecCCCccccccceEEEEEec
Confidence            43     34457899998763211 1111111122223345555542   223333332           2345555555


Q ss_pred             CCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE--cCCCeEEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911        237 PANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV--GSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                      ..  .....+.. .+           +|.++.|+|+++-++++  -.--.+.|||++ +.++..+.  +++-+++-|+|.
T Consensus       260 g~--s~~V~L~k-~G-----------PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~  322 (566)
T KOG2315|consen  260 GE--SVSVPLLK-EG-----------PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPH  322 (566)
T ss_pred             Cc--eEEEecCC-CC-----------CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCC
Confidence            22  22222221 22           89999999999766654  456789999987 67776664  677789999999


Q ss_pred             CCEEEEEeccCCcCCCccCCCCCCceee
Q psy12911        315 GQIFAYAVSYDWSKGHEHNNPNKGNAIF  342 (356)
Q Consensus       315 ~~~l~~~s~~d~~~~~~~~~~~~~~~~~  342 (356)
                      |++|+.|+-+.-....++||.....+|.
T Consensus       323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~  350 (566)
T KOG2315|consen  323 GNIILLAGFGNLPGDMEVWDVPNRKLIA  350 (566)
T ss_pred             CCEEEEeecCCCCCceEEEeccchhhcc
Confidence            9999999865555566777777654443

>KOG4532|consensus

Probab=99.27  E-value=3.4e-09  Score=80.59  Aligned_cols=250  Identities=12%  Similarity=0.015  Sum_probs=158.4

Q ss_pred             eCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-----CCCeEEEEcCCCeEEEEEcCCCceee--ecccCCCeeEE
Q psy12911         51 SWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-----DGTKVFMAGCDKTVKCWDLASNQSMQ--VAQHDAPVKTC  123 (356)
Q Consensus        51 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~v~~~  123 (356)
                      +....+-+|++.++.+..+...       ..+.|-|     .-.+||.|+..|...+|...+.+...  ...|...|.-+
T Consensus        49 ~~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~  121 (344)
T KOG4532|consen   49 SKTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV  121 (344)
T ss_pred             cceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence            4455688888877543333333       3345544     34589999999999999998766433  22233322211


Q ss_pred             EEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe---CCCeeEEEecCCCeEEEEecCCeEEEEeCCCCcccccc-ccC
Q psy12911        124 HWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN---LPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKK-TES  199 (356)
Q Consensus       124 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~  199 (356)
                      .=. .....-+..++.|.++++.++.-+.......   .......++.++.++++.+....|..|.+......... ...
T Consensus       122 ~r~-cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a  200 (344)
T KOG4532|consen  122 KRY-CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA  200 (344)
T ss_pred             hhh-cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec
Confidence            100 0112235667788888888876554333322   22456667778889999999999999999875433222 333


Q ss_pred             cccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCc---ceeeeecCCCCCCCcccccceEEEEEeCCC--C
Q psy12911        200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDN---FTFKCHRSNGGAGGVQDIYAVNGIVFHPVH--G  274 (356)
Q Consensus       200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~--~  274 (356)
                      +....--+.+|+..    ...+|++..||.+.|||++.......   .+-+.|.           +.+..+.|++.|  .
T Consensus       201 ~t~D~gF~~S~s~~----~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hn-----------Ga~R~c~Fsl~g~lD  265 (344)
T KOG4532|consen  201 PTSDHGFYNSFSEN----DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHN-----------GAFRVCRFSLYGLLD  265 (344)
T ss_pred             ccCCCceeeeeccC----cceEEEEecCCcEEEEEecccccchhhhcccCCCCC-----------CceEEEEecCCCcce
Confidence            44455577888877    78899999999999999976532111   1112233           389999999977  4


Q ss_pred             EEEEEcCCCeEEEEEcCcceecCCCC-------CCc-cceEEEEECCCCCEEEEEec
Q psy12911        275 TLATVGSEGTFSFWDKDARTKLKPSE-------AMD-MSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       275 ~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~-~~v~~~~~s~~~~~l~~~s~  323 (356)
                      +|+-.-.-+.+.+-|+++++..+.+.       .|. ..|..-.|+.++.-+.+++.
T Consensus       266 LLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  266 LLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             EEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence            56666566789999999876544322       222 34666777777666655553

>KOG0309|consensus

Probab=99.27  E-value=4e-11  Score=103.09  Aligned_cols=264  Identities=13%  Similarity=0.138  Sum_probs=177.1

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCC--eEEEEcCCCeEEEEEcC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT--KVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~  106 (356)
                      .+++.++..+|.|   +-+|.++.-| +.+-|+...............-.|-.+.|+|...  +-++........+|++.
T Consensus        24 ~~~~~a~si~p~g---rdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA   99 (1081)
T KOG0309|consen   24 DGGFNAVSINPSG---RDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA   99 (1081)
T ss_pred             cCcccceeecccc---chhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence            5688899999999   8899988776 5677777654444222222234577888988432  33333345566789886


Q ss_pred             CC--ceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC-ceEEEeC---CCeeEEEecCCCeEEEEec
Q psy12911        107 SN--QSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ-PIMTINL---PERCYCADVDYPLAVVGTA  178 (356)
Q Consensus       107 ~~--~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~  178 (356)
                      ..  +.+.  +.+|...|+.+.|+| .....+++++.|-.+..||+++.. ++..+..   ....+.+....+.+++.+.
T Consensus       100 ~ss~~aIef~lhghsraitd~n~~~-q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh  178 (1081)
T KOG0309|consen  100 KSSSNAIEFVLHGHSRAITDINFNP-QHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH  178 (1081)
T ss_pred             cCCccceEEEEecCccceeccccCC-CCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhcc
Confidence            43  2333  678999999999995 556789999999999999999874 4444432   2234556666678888899


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCc
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGV  258 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (356)
                      .+.|.+||++.+..+...... +-..+..+.|..-.   ...+.+.+.|++++.|+.+..+....+......        
T Consensus       179 g~~i~vwd~r~gs~pl~s~K~-~vs~vn~~~fnr~~---~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~--------  246 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGSTPLCSLKG-HVSSVNSIDFNRFK---YSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNF--------  246 (1081)
T ss_pred             CCceEEEeccCCCcceEEecc-cceeeehHHHhhhh---hhhhcccCCCCceeeecccccccccceeccccC--------
Confidence            999999999998766655553 55566677766542   457889999999999999876543333332221        


Q ss_pred             ccccceEEEEEeCCC--CEEEEEcCCCeEEEEE---------cCc-ceecCCCCCCccceEEEEECC
Q psy12911        259 QDIYAVNGIVFHPVH--GTLATVGSEGTFSFWD---------KDA-RTKLKPSEAMDMSISTCALNH  313 (356)
Q Consensus       259 ~~~~~i~~i~~sp~~--~~l~s~~~dg~i~iwd---------~~~-~~~~~~~~~~~~~v~~~~~s~  313 (356)
                          +|..-.+-|-|  .++.-.-.+..+.+++         ..+ .+++++|.+|.+.|....|-.
T Consensus       247 ----piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~  309 (1081)
T KOG0309|consen  247 ----PIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK  309 (1081)
T ss_pred             ----cceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence                67777777755  2332222222444443         322 357888999988876655543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.25  E-value=1.3e-08  Score=87.26  Aligned_cols=253  Identities=15%  Similarity=0.082  Sum_probs=150.9

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEE
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCH  124 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~  124 (356)
                      ..+++++.+|.|..+|..++. .. -.............  .++..++.++.++.+..+|..+|+.+........+.+.-
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~-~~-W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p  141 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGK-RL-WRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP  141 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCc-Ee-eeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence            578888889999999988743 22 22221111111222  246788888899999999999998876444334333221


Q ss_pred             EEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEE------EecCCCeEEEEecCCeEEEEeCCCCcccccccc
Q psy12911        125 WIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYC------ADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE  198 (356)
Q Consensus       125 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  198 (356)
                      .   -.+..++.++.++.|..||.++++.+..++.......      ....+..++++..++.+..+|.+++........
T Consensus       142 ~---v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~  218 (377)
T TIGR03300       142 L---VANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRV  218 (377)
T ss_pred             E---EECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence            1   2244677778899999999999998887765443211      112235678888899999999988764332211


Q ss_pred             C-ccc-ccc---eEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC
Q psy12911        199 S-PLK-YQN---RCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH  273 (356)
Q Consensus       199 ~-~~~-~~i---~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~  273 (356)
                      . ... ..+   ..+.-+|-  ..+..+++++.+|.++.+|...+  +.++.....             .......  ++
T Consensus       219 ~~~~g~~~~~~~~~~~~~p~--~~~~~vy~~~~~g~l~a~d~~tG--~~~W~~~~~-------------~~~~p~~--~~  279 (377)
T TIGR03300       219 ALPKGRTELERLVDVDGDPV--VDGGQVYAVSYQGRVAALDLRSG--RVLWKRDAS-------------SYQGPAV--DD  279 (377)
T ss_pred             ccCCCCCchhhhhccCCccE--EECCEEEEEEcCCEEEEEECCCC--cEEEeeccC-------------CccCceE--eC
Confidence            0 000 000   00111110  01357788888999999998755  444433311             1112222  46


Q ss_pred             CEEEEEcCCCeEEEEEcCcceecCCCCCCcc-ceEEEEECCCCCEEEEEeccC
Q psy12911        274 GTLATVGSEGTFSFWDKDARTKLKPSEAMDM-SISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       274 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ..++.++.||.|..+|..+|+.+........ .......  .+..|++++.++
T Consensus       280 ~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G  330 (377)
T TIGR03300       280 NRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEG  330 (377)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCC
Confidence            6788888999999999999988765532211 1122122  355666665444

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.25  E-value=1.1e-08  Score=84.61  Aligned_cols=265  Identities=16%  Similarity=0.179  Sum_probs=174.3

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCC---------------eEEEEeccCCCceeeeeeccCCcc--ee-EEEEccCCCe
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDN---------------NVRCWEVEPNGKTIPKSMQGMSEP--VL-DVAWIDDGTK   90 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg---------------~i~vw~~~~~~~~~~~~~~~~~~~--v~-~~~~s~~~~~   90 (356)
                      ...|.-+.|+|.+   ++|.+-+..+               .+.+||+.+  ..++..+..-..+  .. -+.|+-+.++
T Consensus        71 ~~~V~~~~fSP~~---kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s--g~iv~sf~~~~q~~~~Wp~~k~s~~D~y  145 (561)
T COG5354          71 HPDVKYLDFSPNE---KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS--GMIVFSFNGISQPYLGWPVLKFSIDDKY  145 (561)
T ss_pred             cCCceecccCccc---ceeeeeccCCccChhhccCCccccCceeEEeccC--ceeEeeccccCCcccccceeeeeecchh
Confidence            3478889999999   9999986543               499999988  4555666655555  55 6889988887


Q ss_pred             EEEEcCCCeEEEEEcCCCceee--eccc-CCCeeEEEEEeCCCCCeEEE-----EECCCeEEEEeCCCCCceEEEe---C
Q psy12911         91 VFMAGCDKTVKCWDLASNQSMQ--VAQH-DAPVKTCHWIKAPNYTCLMT-----GSWDKTLKFWDLRTPQPIMTIN---L  159 (356)
Q Consensus        91 l~~~~~dg~i~vwd~~~~~~~~--~~~~-~~~v~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~---~  159 (356)
                      +|-.. ...+.|+++ ++....  +..- ...+....|+|..++..|+.     .+.++.+++|.+..+..+.+-.   .
T Consensus       146 ~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~  223 (561)
T COG5354         146 VARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV  223 (561)
T ss_pred             hhhhc-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee
Confidence            76553 457999997 444332  2221 35678888885445555554     3457889999998776655433   2


Q ss_pred             CCeeEEEecCCCeEEEE-----------ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC
Q psy12911        160 PERCYCADVDYPLAVVG-----------TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG  228 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~-----------~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg  228 (356)
                      ..-.+-+...+.++++-           ..+..++++++.........   ...++|...+|.|..+  .-.++.|...-
T Consensus       224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~---~~~~pVhdf~W~p~S~--~F~vi~g~~pa  298 (561)
T COG5354         224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK---DLKDPVHDFTWEPLSS--RFAVISGYMPA  298 (561)
T ss_pred             cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec---cccccceeeeecccCC--ceeEEeccccc
Confidence            33334444555544321           12367888888855433222   4578899999999832  22344456788


Q ss_pred             eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC---CeEEEEEcCcceecC-CCCCCcc
Q psy12911        229 RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE---GTFSFWDKDARTKLK-PSEAMDM  304 (356)
Q Consensus       229 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~-~~~~~~~  304 (356)
                      .+.+++++.+   ..+.+  ...           .-+.+.|+|.+++++.++-|   |.|.+||........ .+.+.  
T Consensus       299 ~~s~~~lr~N---l~~~~--Pe~-----------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--  360 (561)
T COG5354         299 SVSVFDLRGN---LRFYF--PEQ-----------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--  360 (561)
T ss_pred             ceeecccccc---eEEec--CCc-----------ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--
Confidence            8888888764   22222  222           45678899999999987766   679999987654433 44432  


Q ss_pred             ceEEEEECCCCCEEEEEec
Q psy12911        305 SISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       305 ~v~~~~~s~~~~~l~~~s~  323 (356)
                      ..+-+.|+||++++.++..
T Consensus       361 n~s~~~wspd~qF~~~~~t  379 (561)
T COG5354         361 NTSYCDWSPDGQFYDTDTT  379 (561)
T ss_pred             CceEeeccCCceEEEecCC
Confidence            3355789999999887764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=1.3e-08  Score=87.40  Aligned_cols=182  Identities=9%  Similarity=0.044  Sum_probs=110.1

Q ss_pred             ceeEEEEccCCCe-EEEEcC---CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEE-CC--CeEEEEeCCC
Q psy12911         78 PVLDVAWIDDGTK-VFMAGC---DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGS-WD--KTLKFWDLRT  150 (356)
Q Consensus        78 ~v~~~~~s~~~~~-l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~  150 (356)
                      ......|+|||+. ++..+.   +..|.++|+.+++...+....+......|+  |||+.++... .+  ..|.++|+.+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~S--PDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVS--KDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEEC--CCCCEEEEEEccCCCcEEEEEECCC
Confidence            7788999999985 554443   357999999999887766666667778899  9998776543 22  3455555544


Q ss_pred             CCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee-cCC-
Q psy12911        151 PQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS-VEG-  228 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg-  228 (356)
                      ++.. .+..                                         .........|+|+    +..++..+ ..+ 
T Consensus       267 g~~~-~LT~-----------------------------------------~~~~d~~p~~SPD----G~~I~F~Sdr~g~  300 (419)
T PRK04043        267 KTLT-QITN-----------------------------------------YPGIDVNGNFVED----DKRIVFVSDRLGY  300 (419)
T ss_pred             CcEE-Eccc-----------------------------------------CCCccCccEECCC----CCEEEEEECCCCC
Confidence            4321 1110                                         0111223468888    55555544 334 


Q ss_pred             -eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC---------CeEEEEEcCcceecCC
Q psy12911        229 -RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE---------GTFSFWDKDARTKLKP  298 (356)
Q Consensus       229 -~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d---------g~i~iwd~~~~~~~~~  298 (356)
                       .|++.+++.+..+.+. ..+              . ....|||||++|+..+..         ..|.+.|+.+++.. .
T Consensus       301 ~~Iy~~dl~~g~~~rlt-~~g--------------~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~  363 (419)
T PRK04043        301 PNIFMKKLNSGSVEQVV-FHG--------------K-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-R  363 (419)
T ss_pred             ceEEEEECCCCCeEeCc-cCC--------------C-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-E
Confidence             3555555544221111 111              1 124899999988766543         36888898877543 2


Q ss_pred             CCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        299 SEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       299 ~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +... .......|+|||+.|+..+..+
T Consensus       364 LT~~-~~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        364 LTAN-GVNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             CCCC-CCcCCeEECCCCCEEEEEEccC
Confidence            3222 2233588999999999987543

>KOG1912|consensus

Probab=99.23  E-value=2.7e-09  Score=92.64  Aligned_cols=305  Identities=10%  Similarity=0.100  Sum_probs=178.4

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCC---------CceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTL---------PQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID   86 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~---------~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~   86 (356)
                      ....+.++.+..|...|+.+.|.|...         ..-+||++...|.|.+||...  ...+..+..|..++..++|-+
T Consensus        42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~--~s~~~~l~~~~~~~qdl~W~~  119 (1062)
T KOG1912|consen   42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL--ASVINWLSHSNDSVQDLCWVP  119 (1062)
T ss_pred             hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh--hhhhhhhcCCCcchhheeeee
Confidence            345677788889999999999987542         124678888899999999987  334456778899999999977


Q ss_pred             ---CC-CeEEEEcCCCeEEEEEcCCCceeeecc-cCCCeeEEEEEeCCCCCeEEEEECCCe-------------------
Q psy12911         87 ---DG-TKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKT-------------------  142 (356)
Q Consensus        87 ---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~-------------------  142 (356)
                         +. ..|++-....++.+|+..+|+...... ......|+.+.| -|.+.+..-+..|.                   
T Consensus       120 ~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP-fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~  198 (1062)
T KOG1912|consen  120 ARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP-FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEF  198 (1062)
T ss_pred             ccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCC-CCcceEEEEccCceEEEEeccCCCCCCCCceeE
Confidence               33 356666667899999999987654222 222333344443 23333333333333                   


Q ss_pred             -------------------------------------------------------EEEEeCCCCCceEEEeCCCe---eE
Q psy12911        143 -------------------------------------------------------LKFWDLRTPQPIMTINLPER---CY  164 (356)
Q Consensus       143 -------------------------------------------------------i~iwd~~~~~~~~~~~~~~~---~~  164 (356)
                                                                             +.++|++-..++..+..+..   .+
T Consensus       199 qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv  278 (1062)
T KOG1912|consen  199 QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFV  278 (1062)
T ss_pred             EEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCccee
Confidence                                                                   33444433333333333222   33


Q ss_pred             EEecCC--CeEEEEecCCeEEEEeCCCCcccccccc----CcccccceEEEeecCCC--------CCCCeEEEeecCCeE
Q psy12911        165 CADVDY--PLAVVGTAGRGIVLYQLEGKPQEFKKTE----SPLKYQNRCIAIFRDKK--------KQPAGYGLGSVEGRV  230 (356)
Q Consensus       165 ~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~dg~i  230 (356)
                      .+-+++  +.++....+|.+.+|--+.....+....    .....++.+++......        ..+..++.--.+|..
T Consensus       279 ~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~  358 (1062)
T KOG1912|consen  279 DVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDS  358 (1062)
T ss_pred             EeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchh
Confidence            333333  4778888999999998766433332211    11223333333322110        002334444567777


Q ss_pred             EEEEeCCCCCCCcce---------e--eeec------CCC-CCCCcccccceEEEEEeC-----------CC-------C
Q psy12911        231 AIQYVNPANPKDNFT---------F--KCHR------SNG-GAGGVQDIYAVNGIVFHP-----------VH-------G  274 (356)
Q Consensus       231 ~i~~~~~~~~~~~~~---------~--~~~~------~~~-~~~~~~~~~~i~~i~~sp-----------~~-------~  274 (356)
                      .+|.+..+.......         +  ....      ... ......|.....+....|           .|       .
T Consensus       359 ~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~p  438 (1062)
T KOG1912|consen  359 TFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVP  438 (1062)
T ss_pred             HHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeee
Confidence            888776432211100         0  0000      000 000001111222222222           12       3


Q ss_pred             EEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        275 TLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       275 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      ++|.|...|+|.++|+.++...+.+..|...|.++.|-...+++-.+.+
T Consensus       439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys  487 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYS  487 (1062)
T ss_pred             eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeec
Confidence            7889999999999999999999999999999999999988877766554

>KOG1354|consensus

Probab=99.23  E-value=1.4e-10  Score=91.00  Aligned_cols=227  Identities=17%  Similarity=0.215  Sum_probs=139.2

Q ss_pred             CCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce-----ee-ecc------------cCCCeeEEEEEeCCCCCeEEE
Q psy12911         75 MSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS-----MQ-VAQ------------HDAPVKTCHWIKAPNYTCLMT  136 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----~~-~~~------------~~~~v~~~~~~~~~~~~~l~~  136 (356)
                      ...-|.++.|...|.+|++|..+|.|.++.-.....     .. +..            -...|..+.|.+..+...++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            345788999999999999999999999996543221     11 222            245789999995556667888


Q ss_pred             EECCCeEEEEeCCCCCceE-EEeCCCeeEEEecCC----CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEee
Q psy12911        137 GSWDKTLKFWDLRTPQPIM-TINLPERCYCADVDY----PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIF  211 (356)
Q Consensus       137 ~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  211 (356)
                      .+.|.+|++|.+....... .+..+...   .+..    ...+.+..+-.+       ...+.+.....|...+.+++++
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~---~~~~~~~lr~p~~~~~~~~v-------ea~prRv~aNaHtyhiNSIS~N  173 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEG---PPGTITSLRLPVEGRHDLEV-------EASPRRVYANAHTYHINSISVN  173 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccC---CCCccceeeceeecccccee-------eeeeeeeccccceeEeeeeeec
Confidence            8999999999987543222 11111110   0000    000111111111       0112334455688899999999


Q ss_pred             cCCCCCCCeEEEeecCCeEEEEEeCCCCCC-CcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEE
Q psy12911        212 RDKKKQPAGYGLGSVEGRVAIQYVNPANPK-DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWD  289 (356)
Q Consensus       212 ~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd  289 (356)
                      .|    ... .....|-.|.+|.++..... .+..++.+..      -....-|++..|||.. ++++-.+..|+|++-|
T Consensus       174 sD----~Et-~lSADdLRINLWnlei~d~sFnIVDIKP~nm------EeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  174 SD----KET-FLSADDLRINLWNLEIIDQSFNIVDIKPANM------EELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD  242 (433)
T ss_pred             Cc----cce-EeeccceeeeeccccccCCceeEEEccccCH------HHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence            98    444 45567788999988654321 1111222211      0011158899999975 7788888999999999


Q ss_pred             cCccee------cCC----------CCCCccceEEEEECCCCCEEEEEe
Q psy12911        290 KDARTK------LKP----------SEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       290 ~~~~~~------~~~----------~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                      ++...+      +..          +..--..|.++.|++.|+|+++-.
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD  291 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD  291 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec
Confidence            984211      111          111134688999999999999864

>KOG2314|consensus

Probab=99.22  E-value=2.4e-08  Score=83.59  Aligned_cols=260  Identities=10%  Similarity=0.116  Sum_probs=152.3

Q ss_pred             eeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC-----------CCeE
Q psy12911         32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-----------DKTV  100 (356)
Q Consensus        32 V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg~i  100 (356)
                      =+-+.|||.|   .||++-..-| |.+|--+.  ...++.+. |. .|.-+.|||+.+||++-+.           ...+
T Consensus       213 etyv~wSP~G---TYL~t~Hk~G-I~lWGG~~--f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l  284 (698)
T KOG2314|consen  213 ETYVRWSPKG---TYLVTFHKQG-IALWGGES--FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL  284 (698)
T ss_pred             eeeEEecCCc---eEEEEEeccc-eeeecCcc--HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceE
Confidence            3568899999   9999998765 88996554  22223332 43 5889999999999998654           2579


Q ss_pred             EEEEcCCCceee-ecc--cCCCe-eEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce--EEEeCCC-eeEEEecCCCeE
Q psy12911        101 KCWDLASNQSMQ-VAQ--HDAPV-KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI--MTINLPE-RCYCADVDYPLA  173 (356)
Q Consensus       101 ~vwd~~~~~~~~-~~~--~~~~v-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~-~~~~~~~~~~~~  173 (356)
                      .|||+.+|...+ +..  ....+ .-..||  .|++++|.-.. ..|.||+..+..++  +.++..+ +-+.+++.++.|
T Consensus       285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS--~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll  361 (698)
T KOG2314|consen  285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWS--HDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL  361 (698)
T ss_pred             EEEEccccchhcceeccCCCccccceEEec--cCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence            999999998876 332  22222 346888  99999988776 46889986653322  1222211 233444444444


Q ss_pred             EEEecC-----CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEE----------eecCCeEEEEEeCCC
Q psy12911        174 VVGTAG-----RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL----------GSVEGRVAIQYVNPA  238 (356)
Q Consensus       174 ~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~~dg~i~i~~~~~~  238 (356)
                      +.-+..     ..+.+-.+.++......  .-+.-.-..+-|..+    +.+|+.          .+.-..+.|+.++..
T Consensus       362 AYwtpe~~~~parvtL~evPs~~~iRt~--nlfnVsDckLhWQk~----gdyLcvkvdR~tK~~~~g~f~n~eIfrireK  435 (698)
T KOG2314|consen  362 AYWTPETNNIPARVTLMEVPSKREIRTK--NLFNVSDCKLHWQKS----GDYLCVKVDRHTKSKVKGQFSNLEIFRIREK  435 (698)
T ss_pred             EEEcccccCCcceEEEEecCccceeeec--cceeeeccEEEeccC----CcEEEEEEEeeccccccceEeeEEEEEeecc
Confidence            332211     22333333322111000  001111112223233    344432          222334566666544


Q ss_pred             CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC---CCeEEEEEcCc-c---eecCCCCCCccceEEEEE
Q psy12911        239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS---EGTFSFWDKDA-R---TKLKPSEAMDMSISTCAL  311 (356)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~---dg~i~iwd~~~-~---~~~~~~~~~~~~v~~~~~  311 (356)
                      . .++..+....            .|...+|-|.|..+++-+.   ..++.+|.+++ .   +++..+..  ...+.+.|
T Consensus       436 d-Ipve~velke------------~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfw  500 (698)
T KOG2314|consen  436 D-IPVEVVELKE------------SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFW  500 (698)
T ss_pred             C-CCceeeecch------------heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEE
Confidence            3 2333333333            6899999999987765543   35799998873 2   33444442  45688999


Q ss_pred             CCCCCEEEEEec
Q psy12911        312 NHNGQIFAYAVS  323 (356)
Q Consensus       312 s~~~~~l~~~s~  323 (356)
                      +|.|++++.+.-
T Consensus       501 sPkG~fvvva~l  512 (698)
T KOG2314|consen  501 SPKGRFVVVAAL  512 (698)
T ss_pred             cCCCcEEEEEEe
Confidence            999999998864

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.17  E-value=1.7e-07  Score=75.26  Aligned_cols=221  Identities=12%  Similarity=0.057  Sum_probs=136.5

Q ss_pred             EEEecC-CCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEc-cCCCeEEEEcCCCeEEEEEcCCCcee
Q psy12911         34 CMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWI-DDGTKVFMAGCDKTVKCWDLASNQSM  111 (356)
Q Consensus        34 ~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~  111 (356)
                      ++.|.+ ++   .++++--..+.|..|+..+. ......+.   . ...+++. +++ .|+.+...+ +.++|..+++..
T Consensus         4 gp~~d~~~g---~l~~~D~~~~~i~~~~~~~~-~~~~~~~~---~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~   73 (246)
T PF08450_consen    4 GPVWDPRDG---RLYWVDIPGGRIYRVDPDTG-EVEVIDLP---G-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVT   73 (246)
T ss_dssp             EEEEETTTT---EEEEEETTTTEEEEEETTTT-EEEEEESS---S-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEE
T ss_pred             ceEEECCCC---EEEEEEcCCCEEEEEECCCC-eEEEEecC---C-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEE
Confidence            567887 55   77777778899999999872 22222222   2 6777777 665 455555444 556699988765


Q ss_pred             eecc------cCCCeeEEEEEeCCCCCeEEEEECC--------CeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEe
Q psy12911        112 QVAQ------HDAPVKTCHWIKAPNYTCLMTGSWD--------KTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGT  177 (356)
Q Consensus       112 ~~~~------~~~~v~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (356)
                      .+..      .....+.+++.  ++|++.++....        |.|..++.. ++......                   
T Consensus        74 ~~~~~~~~~~~~~~~ND~~vd--~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-------------------  131 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAVD--PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-------------------  131 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-------------------
T ss_pred             EEeeccCCCcccCCCceEEEc--CCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-------------------
Confidence            5322      23457888888  888877665533        334444433 22111110                   


Q ss_pred             cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCCCCC--cceeeeecCCCC
Q psy12911        178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPANPKD--NFTFKCHRSNGG  254 (356)
Q Consensus       178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~~~~--~~~~~~~~~~~~  254 (356)
                                             .-.....++|+|+    +..| ++-+..+.|..++++......  ...+....... 
T Consensus       132 -----------------------~~~~pNGi~~s~d----g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-  183 (246)
T PF08450_consen  132 -----------------------GLGFPNGIAFSPD----GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-  183 (246)
T ss_dssp             -----------------------EESSEEEEEEETT----SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-
T ss_pred             -----------------------CcccccceEECCc----chheeecccccceeEEEeccccccceeeeeeEEEcCCCC-
Confidence                                   1123478889988    5544 466677888888886543211  11121111100 


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEE-CCCCCEEEEEe
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCAL-NHNGQIFAYAV  322 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~s  322 (356)
                             ...-.+++..+|++.++....+.|.++|.+ |+.+..+......+++++| .++.+.|...+
T Consensus       184 -------g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  184 -------GYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -------CEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             -------cCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence                   036789999999998888889999999988 8888777655558999999 47777776655

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532|consensus

Probab=99.17  E-value=1.9e-08  Score=76.59  Aligned_cols=236  Identities=9%  Similarity=-0.030  Sum_probs=149.4

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC-CCeEEEEcCCCeEEEEEcCCCceeeecccCC--Cee
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD-GTKVFMAGCDKTVKCWDLASNQSMQVAQHDA--PVK  121 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~v~  121 (356)
                      .+||.|+.-|...+|...++. ........|...|+-+.=..+ .-.+..++.|.++++.+++.+.... .-|..  .+.
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~-~~h~~~~~~n  162 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF-AVHNQNLTQN  162 (344)
T ss_pred             cEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc-eeecccccee
Confidence            589999999999999998743 333444445544433221112 2346777889999999887554332 22333  378


Q ss_pred             EEEEEeCCCCCeEEEEECCCeEEEEeCCCC-Cc-eEEEeCC--CeeEE--EecCCCeEEEEecCCeEEEEeCCCCccccc
Q psy12911        122 TCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QP-IMTINLP--ERCYC--ADVDYPLAVVGTAGRGIVLYQLEGKPQEFK  195 (356)
Q Consensus       122 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~-~~~~~~~--~~~~~--~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  195 (356)
                      +++++  ++++++++.+....|..|.+... +. +.....+  ...++  ++.....++++..||++.|||++....+..
T Consensus       163 s~~~s--nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  163 SLHYS--NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeEEc--CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            88998  99999999999999999988654 32 2322222  23344  444456899999999999999998654333


Q ss_pred             c---ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCC
Q psy12911        196 K---TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV  272 (356)
Q Consensus       196 ~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~  272 (356)
                      .   ....|.+.++.+.|++.+.  -.+|+..-.-+.+.+.|++....  .+.+........   .+...-|..-.|+.+
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~--lDLLf~sEhfs~~hv~D~R~~~~--~q~I~i~~d~~~---~~~tq~ifgt~f~~~  313 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGL--LDLLFISEHFSRVHVVDTRNYVN--HQVIVIPDDVER---KHNTQHIFGTNFNNE  313 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCc--ceEEEEecCcceEEEEEcccCce--eeEEecCccccc---cccccccccccccCC
Confidence            2   2345778999999998643  35667777778889988876532  222211111000   000013677778877


Q ss_pred             CCEEEEEcCCCeEEEEEcCc
Q psy12911        273 HGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       273 ~~~l~s~~~dg~i~iwd~~~  292 (356)
                      +..+.+.+++ .+.=|++.+
T Consensus       314 n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  314 NESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             Ccccccccch-hhheeeccc
Confidence            7666666554 345566554

>KOG0309|consensus

Probab=99.14  E-value=1.1e-09  Score=94.57  Aligned_cols=245  Identities=14%  Similarity=0.221  Sum_probs=158.4

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-ceeeeeeccCCcceeEEEEccCC-CeEEEEcCCCeEEEEEcCCC
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-KTIPKSMQGMSEPVLDVAWIDDG-TKVFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~  108 (356)
                      .|-.+.|+|..-.+..+++. ....-.+|++.... ..+...+.+|...|+.+.|.|.. ..+++++-|-.+..||+++.
T Consensus        69 ~vad~qws~h~a~~~wiVst-s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp  147 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVST-SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP  147 (1081)
T ss_pred             hhcceecccCCCCceeEEec-CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence            46677888764223344444 45667789986533 45556788999999999999854 47889999999999999876


Q ss_pred             ceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeCCCeeEE-Eec---CCCeEEEEecCCe
Q psy12911        109 QSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINLPERCYC-ADV---DYPLAVVGTAGRG  181 (356)
Q Consensus       109 ~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~-~~~---~~~~~~~~~~d~~  181 (356)
                      ..-.  +..-......++|+  .....+++.+..+.|++||++.+ .++..++.+...+. +.+   ....+.+.+.|++
T Consensus       148 ~~p~ys~~~w~s~asqVkwn--yk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t  225 (1081)
T KOG0309|consen  148 HRPFYSTSSWRSAASQVKWN--YKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT  225 (1081)
T ss_pred             CcceeeeecccccCceeeec--ccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence            5432  34445567788998  44444555566788999999987 56777777543322 222   2347889999999


Q ss_pred             EEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC--------CCCCcceeeeecCCC
Q psy12911        182 IVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA--------NPKDNFTFKCHRSNG  253 (356)
Q Consensus       182 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~--------~~~~~~~~~~~~~~~  253 (356)
                      ++.||............ ....++..-.+.|-++  +..+.-.-.+..+.+++.+..        ...+++.+.+|..  
T Consensus       226 vkfw~y~kSt~e~~~~v-tt~~piw~~r~~Pfg~--g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--  300 (1081)
T KOG0309|consen  226 VKFWDYSKSTTESKRTV-TTNFPIWRGRYLPFGE--GYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--  300 (1081)
T ss_pred             eeeecccccccccceec-cccCcceeccccccCc--eeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--
Confidence            99999987644333222 3345555555555521  111111111223333333211        2367889999987  


Q ss_pred             CCCCcccccceEEEEEeCCC----------CEEEEEcCCCeEEEEEcCc
Q psy12911        254 GAGGVQDIYAVNGIVFHPVH----------GTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp~~----------~~l~s~~~dg~i~iwd~~~  292 (356)
                               .|....|-..+          -.|++-+.|..+++|-+.+
T Consensus       301 ---------~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  301 ---------VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ---------HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence                     55555443211          3699999999999998864

>KOG3914|consensus

Probab=99.12  E-value=5.6e-10  Score=89.42  Aligned_cols=88  Identities=25%  Similarity=0.356  Sum_probs=76.1

Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEe
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD  147 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd  147 (356)
                      ..+-||-..++.++|+||+++|+++..|..|++-....--.+.  ..+|+.-|..++.-   ++..|++++.|++|++||
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~---~~~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT---DNYLLLSGSGDKTLRLWD  221 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec---cCceeeecCCCCcEEEEe
Confidence            4456899999999999999999999999999998877655554  67899999999984   556799999999999999


Q ss_pred             CCCCCceEEEeCC
Q psy12911        148 LRTPQPIMTINLP  160 (356)
Q Consensus       148 ~~~~~~~~~~~~~  160 (356)
                      +++++.+.++...
T Consensus       222 ~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  222 ITSGKLLDTCDLS  234 (390)
T ss_pred             cccCCcccccchh
Confidence            9999998777654

>KOG3914|consensus

Probab=99.12  E-value=2.7e-09  Score=85.57  Aligned_cols=157  Identities=13%  Similarity=0.102  Sum_probs=103.9

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc--eeeeeeccCCcceeEEEEccCCCeEEE---EcCCCeEEEEEc
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK--TIPKSMQGMSEPVLDVAWIDDGTKVFM---AGCDKTVKCWDL  105 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~---~~~dg~i~vwd~  105 (356)
                      .+..+..++.+   ++||++..+....++++..+.+  .+.... .-...-+++.|..+...+..   ++....+.+|..
T Consensus        64 a~~~~~~s~~~---~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   64 APALVLTSDSG---RLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             cccccccCCCc---eEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            34455677887   9999999888888888766432  221111 12233344555444444443   344566777777


Q ss_pred             CCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEE
Q psy12911        106 ASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLY  185 (356)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~  185 (356)
                      ..+......+|-+.++.++|+  +|+++|+++..|..|++-.....-.+..+-.                          
T Consensus       140 ~~~~~~~~lGhvSml~dVavS--~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--------------------------  191 (390)
T KOG3914|consen  140 DSGRCEPILGHVSMLLDVAVS--PDDQFIITADRDEKIRVSRYPATFVIESFCL--------------------------  191 (390)
T ss_pred             cccCcchhhhhhhhhheeeec--CCCCEEEEecCCceEEEEecCcccchhhhcc--------------------------
Confidence            667777789999999999999  9999999999999999987655444444332                          


Q ss_pred             eCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        186 QLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       186 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                                    .|..-|..+++.++     ..|++++.|+++++||+..+
T Consensus       192 --------------GH~eFVS~isl~~~-----~~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  192 --------------GHKEFVSTISLTDN-----YLLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             --------------ccHhheeeeeeccC-----ceeeecCCCCcEEEEecccC
Confidence                          34455556666555     34666777777777776655

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.12  E-value=1e-07  Score=76.24  Aligned_cols=219  Identities=16%  Similarity=0.122  Sum_probs=131.8

Q ss_pred             CCeEEEEeccCCCceeeee-eccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCC
Q psy12911         53 DNNVRCWEVEPNGKTIPKS-MQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNY  131 (356)
Q Consensus        53 dg~i~vw~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  131 (356)
                      +|.|..||..++ ..+-.. +..-.....+. ..+++..+++++.++.|..||..+|+.+........+.....   ..+
T Consensus         2 ~g~l~~~d~~tG-~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~---~~~   76 (238)
T PF13360_consen    2 DGTLSALDPRTG-KELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPV---VDG   76 (238)
T ss_dssp             TSEEEEEETTTT-EEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEE---EET
T ss_pred             CCEEEEEECCCC-CEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceee---ecc
Confidence            688999998773 333222 21101111111 233566788888999999999999998764333443333222   344


Q ss_pred             CeEEEEECCCeEEEEeCCCCCceEEE-eCCC------eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCccc--
Q psy12911        132 TCLMTGSWDKTLKFWDLRTPQPIMTI-NLPE------RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLK--  202 (356)
Q Consensus       132 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--  202 (356)
                      ..++.++.++.|+.+|..+++.+... ....      ........++.++++..++.|..+|++++............  
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~  156 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS  156 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred             cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence            56777778889999999999998884 3221      22334445788999999999999999988764443321111  


Q ss_pred             cc------ceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEE
Q psy12911        203 YQ------NRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTL  276 (356)
Q Consensus       203 ~~------i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l  276 (356)
                      ..      +..-....+    + .+.++..++.+..+|...+  +.+....  ..           .+..+ ...++..|
T Consensus       157 ~~~~~~~~~~~~~~~~~----~-~v~~~~~~g~~~~~d~~tg--~~~w~~~--~~-----------~~~~~-~~~~~~~l  215 (238)
T PF13360_consen  157 SPISSFSDINGSPVISD----G-RVYVSSGDGRVVAVDLATG--EKLWSKP--IS-----------GIYSL-PSVDGGTL  215 (238)
T ss_dssp             --EEEETTEEEEEECCT----T-EEEEECCTSSEEEEETTTT--EEEEEEC--SS------------ECEC-EECCCTEE
T ss_pred             cceeeecccccceEEEC----C-EEEEEcCCCeEEEEECCCC--CEEEEec--CC-----------CccCC-ceeeCCEE
Confidence            11      111112222    3 6667777775333377655  3222222  11           22221 34567788


Q ss_pred             EEEcCCCeEEEEEcCcceecC
Q psy12911        277 ATVGSEGTFSFWDKDARTKLK  297 (356)
Q Consensus       277 ~s~~~dg~i~iwd~~~~~~~~  297 (356)
                      +.++.++.|..||+++|+.+.
T Consensus       216 ~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  216 YVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEEETTTEEEEEETTTTEEEE
T ss_pred             EEEeCCCEEEEEECCCCCEEe
Confidence            888799999999999998753

...

>KOG4190|consensus

Probab=99.11  E-value=3e-10  Score=94.90  Aligned_cols=209  Identities=17%  Similarity=0.257  Sum_probs=147.4

Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC-------cee-eecccCCCeeEEEEEeCCCCCeEEEEECCC
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN-------QSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDK  141 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  141 (356)
                      ..+.+|...|..++--.+.+.+++++.|.+|++|.++..       .+. .+..|..+|.++.|.  .+.++++++  ||
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL--~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL--ADLRSIASC--DG  804 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee--eccceeeec--cC
Confidence            466789999999887778889999999999999998742       122 267899999999998  888788765  78


Q ss_pred             eEEEEeCCCCCceEEEeC------CCeeEEEec-CCCeEEEE-ecCCeEEEEeCCCCcc--cccccc-CcccccceEEEe
Q psy12911        142 TLKFWDLRTPQPIMTINL------PERCYCADV-DYPLAVVG-TAGRGIVLYQLEGKPQ--EFKKTE-SPLKYQNRCIAI  210 (356)
Q Consensus       142 ~i~iwd~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~-~~d~~i~i~d~~~~~~--~~~~~~-~~~~~~i~~~~~  210 (356)
                      -|.+||.--++++.....      ...+.++.- +...++++ +...+++++|.+...-  +.+.-. ......++++++
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            899999887776654331      123455544 33444444 7789999999987652  222222 223366789999


Q ss_pred             ecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEE-EE
Q psy12911        211 FRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSF-WD  289 (356)
Q Consensus       211 ~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~i-wd  289 (356)
                      .+.    ++.++++-.+|.+.+.|.+++  +.+..+..-.-           ....++ .|..+.|+....|.++.+ |.
T Consensus       885 a~~----GN~lAa~LSnGci~~LDaR~G--~vINswrpmec-----------dllqla-apsdq~L~~saldHslaVnWh  946 (1034)
T KOG4190|consen  885 ADK----GNKLAAALSNGCIAILDARNG--KVINSWRPMEC-----------DLLQLA-APSDQALAQSALDHSLAVNWH  946 (1034)
T ss_pred             ccC----cchhhHHhcCCcEEEEecCCC--ceeccCCcccc-----------hhhhhc-CchhHHHHhhcccceeEeeeh
Confidence            998    889999999999999998776  44443332221           222232 345577888888888888 88


Q ss_pred             cCcceecCCCC
Q psy12911        290 KDARTKLKPSE  300 (356)
Q Consensus       290 ~~~~~~~~~~~  300 (356)
                      ..+|......+
T Consensus       947 aldgimh~q~k  957 (1034)
T KOG4190|consen  947 ALDGIMHLQDK  957 (1034)
T ss_pred             hcCCeeeeccC
Confidence            77665544443

>KOG0882|consensus

Probab=99.11  E-value=1.3e-09  Score=88.77  Aligned_cols=240  Identities=12%  Similarity=0.039  Sum_probs=169.4

Q ss_pred             CCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc---ee-eecccCCCeeEEEEEeCCCCCeEEEEEC-CCeEEEEeCC
Q psy12911         75 MSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ---SM-QVAQHDAPVKTCHWIKAPNYTCLMTGSW-DKTLKFWDLR  149 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~  149 (356)
                      |...|+.+.-. -.+++.+++.||.++.|.-..-.   .+ .+..|...|.+++.+  .++.++.+.+. |..++++|+.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S--~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS--YDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc--ccceeEeeccCcccceeEEEee
Confidence            77778777554 45699999999999999765422   22 267788999999999  99999999777 9999999998


Q ss_pred             CCCceEEEe---CCCeeEEEecCCC---eEEEE-ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEE
Q psy12911        150 TPQPIMTIN---LPERCYCADVDYP---LAVVG-TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYG  222 (356)
Q Consensus       150 ~~~~~~~~~---~~~~~~~~~~~~~---~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  222 (356)
                      +-..+.-++   .+..+......++   .++++ -.++.|.++|-.............|..+|.++.+.+.    +..++
T Consensus        85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa----~Ds~v  160 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA----GDSAV  160 (558)
T ss_pred             ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecc----cccee
Confidence            876554433   3444444444442   34443 4579999999988776666666778899999999998    78899


Q ss_pred             EeecCCeEEEEEeCCC----CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC
Q psy12911        223 LGSVEGRVAIQYVNPA----NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP  298 (356)
Q Consensus       223 ~~~~dg~i~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  298 (356)
                      +....|.|.-|..+..    .......++.....-...  ..-....++.|+|+|..+.+-+.|..|++++.++|+.++.
T Consensus       161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~--K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP--KAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             eccccceeEeecCCCcccCccccccccccccchhhccc--ccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence            9999999999987641    111122222111111000  0001578999999999999999999999999999876554


Q ss_pred             CC--------------------------------CCcc-ceEEEEECCCCCEEEEEec
Q psy12911        299 SE--------------------------------AMDM-SISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       299 ~~--------------------------------~~~~-~v~~~~~s~~~~~l~~~s~  323 (356)
                      +.                                .|.. .-+.+.|...|++|+.++-
T Consensus       239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~  296 (558)
T KOG0882|consen  239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI  296 (558)
T ss_pred             hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc
Confidence            32                                1111 2346778888999988863

>KOG1912|consensus

Probab=99.11  E-value=2.8e-08  Score=86.58  Aligned_cols=238  Identities=13%  Similarity=0.096  Sum_probs=161.5

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCC------------CeEEEEcCCC
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG------------TKVFMAGCDK   98 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~~dg   98 (356)
                      .-.++.|+|.|    +||.|+. ..|.|-|..+  .+.+..+.-|...|+.+.|.|..            -.||++.-.|
T Consensus        17 N~~A~Dw~~~G----LiAygsh-slV~VVDs~s--~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   17 NRNAADWSPSG----LIAYGSH-SLVSVVDSRS--LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             cccccccCccc----eEEEecC-ceEEEEehhh--hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            36688999997    7888774 4788888877  56667888899999999998721            1466666789


Q ss_pred             eEEEEEcCCCceee-ecccCCCeeEEEEEeCCCC--CeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEE-EecCC---C
Q psy12911         99 TVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNY--TCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYC-ADVDY---P  171 (356)
Q Consensus        99 ~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~---~  171 (356)
                      .|.+||...+..+. +..|..++..++|-+..+.  ..|+.-....+|.+|+..+|+....+.....++. +..+.   .
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r  169 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR  169 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence            99999999887766 6778899999999864332  4566667778999999999999888887665433 43332   3


Q ss_pred             eEEEEecCCeEEEEeCCCCccc---cc--cccCcc----------------cc---------cceEEEeecCCCCCCCeE
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQE---FK--KTESPL----------------KY---------QNRCIAIFRDKKKQPAGY  221 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~---~~--~~~~~~----------------~~---------~i~~~~~~~~~~~~~~~~  221 (356)
                      .+.+.+..|.+.+-+.-....+   .+  .+...+                ..         ....++|+|.    -+.+
T Consensus       170 h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~----~rn~  245 (1062)
T KOG1912|consen  170 HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPH----WRNI  245 (1062)
T ss_pred             eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChh----hhce
Confidence            5555666666665554321100   00  000000                00         0122445665    3445


Q ss_pred             EEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC--CEEEEEcCCCeEEEEEcCc
Q psy12911        222 GLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH--GTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       222 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~--~~l~s~~~dg~i~iwd~~~  292 (356)
                      +.......+.++|++..  ..+....-.++           .+.-+.+-|++  ..|++.-.||.+.+|-.+.
T Consensus       246 lfi~~prellv~dle~~--~~l~vvpier~-----------~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  246 LFITFPRELLVFDLEYE--CCLAVVPIERG-----------GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEEEeccceEEEcchhh--ceeEEEEeccC-----------CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            55666777889988766  45555555554           45567777776  6799999999999997654

>KOG1064|consensus

Probab=99.11  E-value=2.1e-10  Score=107.74  Aligned_cols=145  Identities=19%  Similarity=0.278  Sum_probs=121.4

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC---CCeEEEEEc
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC---DKTVKCWDL  105 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~  105 (356)
                      ...|+.+.|+..|   +.+..+..||.+.+|....   .+....+.|+.......|-.  ..+++++.   ++.+.+||.
T Consensus      2251 ~s~vtr~~f~~qG---nk~~i~d~dg~l~l~q~~p---k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2251 NSRVTRSRFNHQG---NKFGIVDGDGDLSLWQASP---KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred             cchhhhhhhcccC---CceeeeccCCceeecccCC---cceeccccCCccccceeeee--hhhhccccCCCCCcccchhc
Confidence            3778888899998   8888999999999999874   55577888999999999975  56777654   789999997


Q ss_pred             CCCc--eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEE
Q psy12911        106 ASNQ--SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIV  183 (356)
Q Consensus       106 ~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  183 (356)
                      .-..  ...-..|.+.++++++.  |..++|++|+.+|.|++||++..+.+++++.      ++ ...++++++..|.|+
T Consensus      2323 l~~~~~s~v~~~H~~gaT~l~~~--P~~qllisggr~G~v~l~D~rqrql~h~~~~------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2323 LLPPMNSLVHTCHDGGATVLAYA--PKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred             ccCcccceeeeecCCCceEEEEc--CcceEEEecCCcCcEEEeehHHHHHHHHhhh------hh-hhheeeccCcccceE
Confidence            5432  22247899999999999  9999999999999999999999988888775      33 456889999999999


Q ss_pred             EEeCCCC
Q psy12911        184 LYQLEGK  190 (356)
Q Consensus       184 i~d~~~~  190 (356)
                      ||++..-
T Consensus      2394 Iw~~s~~ 2400 (2439)
T KOG1064|consen 2394 IWRLSEF 2400 (2439)
T ss_pred             EEEcccc
Confidence            9999875

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=1.2e-07  Score=81.46  Aligned_cols=180  Identities=7%  Similarity=-0.027  Sum_probs=116.8

Q ss_pred             CeeEEEecCCCCCceE-EEEEeC---CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC---CCeEEEE
Q psy12911         31 SISCMAFSPSTLPQYF-LIAGSW---DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC---DKTVKCW  103 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~-l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vw  103 (356)
                      .+....|+|+|   +. ++..+.   +..|.++|+.++....   +....+......|+|||+.|+....   +..|.++
T Consensus       189 ~~~~p~wSpDG---~~~i~y~s~~~~~~~Iyv~dl~tg~~~~---lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  262 (419)
T PRK04043        189 LNIFPKWANKE---QTAFYYTSYGERKPTLYKYNLYTGKKEK---IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY  262 (419)
T ss_pred             CeEeEEECCCC---CcEEEEEEccCCCCEEEEEECCCCcEEE---EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence            77889999999   63 664443   3568888987743333   2224555667889999987765432   4578888


Q ss_pred             EcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC-C--eEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecC-
Q psy12911        104 DLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD-K--TLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAG-  179 (356)
Q Consensus       104 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-  179 (356)
                      |+.+++...+..+........|+  |||+.|+..+.. +  .|.+.|+.+++..+..........+++++..++..... 
T Consensus       263 dl~~g~~~~LT~~~~~d~~p~~S--PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~  340 (419)
T PRK04043        263 DTNTKTLTQITNYPGIDVNGNFV--EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRET  340 (419)
T ss_pred             ECCCCcEEEcccCCCccCccEEC--CCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCC
Confidence            99888876665555444556799  999877776632 2  68888988776533332222234788888877665543 


Q ss_pred             --------CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec
Q psy12911        180 --------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV  226 (356)
Q Consensus       180 --------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  226 (356)
                              ..|.+.|+.++....  +...  .......|+|+    +..++....
T Consensus       341 ~~~~~~~~~~I~v~d~~~g~~~~--LT~~--~~~~~p~~SPD----G~~I~f~~~  387 (419)
T PRK04043        341 NNEFGKNTFNLYLISTNSDYIRR--LTAN--GVNQFPRFSSD----GGSIMFIKY  387 (419)
T ss_pred             CcccCCCCcEEEEEECCCCCeEE--CCCC--CCcCCeEECCC----CCEEEEEEc
Confidence                    378888887764322  2111  22345889999    666665553

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.10  E-value=4.1e-07  Score=70.44  Aligned_cols=236  Identities=13%  Similarity=0.137  Sum_probs=129.9

Q ss_pred             EEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec---cCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCcee
Q psy12911         35 MAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ---GMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSM  111 (356)
Q Consensus        35 ~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  111 (356)
                      ++.+.+|   ++||.-. |..|.|=...++=...+...+   ...-.-.-++||||+..||.+...|+|+++|+...++.
T Consensus         3 ~~~~~~G---k~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf   78 (282)
T PF15492_consen    3 LALSSDG---KLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF   78 (282)
T ss_pred             eeecCCC---cEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE
Confidence            5667788   7777764 667877766553222222222   22334678999999999999999999999999876544


Q ss_pred             eec-------ccCCCeeEEEEEeCC-C---CCeEEEEECCCeEEEEeCCCC-----CceEEEeC------CCeeEEEecC
Q psy12911        112 QVA-------QHDAPVKTCHWIKAP-N---YTCLMTGSWDKTLKFWDLRTP-----QPIMTINL------PERCYCADVD  169 (356)
Q Consensus       112 ~~~-------~~~~~v~~~~~~~~~-~---~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~------~~~~~~~~~~  169 (356)
                      ...       .....|..+.|.... +   ...|++-..+|.++-|-+..+     +...++..      .......++.
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            321       123567777776311 0   124666667888877765322     23333332      1234455555


Q ss_pred             CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec-CCeE------EEEEeCCCCCCC
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV-EGRV------AIQYVNPANPKD  242 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-dg~i------~i~~~~~~~~~~  242 (356)
                      .++|++|+....      +.+      ........+++-.+..+.   +.+..+... ++..      .++.+-.   ..
T Consensus       159 h~LLlVgG~~~~------~~~------~s~a~~~GLtaWRiL~~~---Pyyk~v~~~~~~~~~~~~~~~~~~~~~---~~  220 (282)
T PF15492_consen  159 HRLLLVGGCEQN------QDG------MSKASSCGLTAWRILSDS---PYYKQVTSSEDDITASSKRRGLLRIPS---FK  220 (282)
T ss_pred             CCEEEEeccCCC------CCc------cccccccCceEEEEcCCC---CcEEEccccCccccccccccceeeccc---ee
Confidence            567777665322      000      000111122222222221   111111111 1110      1111110   00


Q ss_pred             cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC
Q psy12911        243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM  302 (356)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  302 (356)
                      .+...+..          ...|..|..||||..||+...+|.|.+|++.+-++.....-+
T Consensus       221 ~fs~~~~~----------~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  221 FFSRQGQE----------QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             eeeccccC----------CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            11111100          117999999999999999999999999999987777666543

>KOG2695|consensus

Probab=99.09  E-value=8.7e-10  Score=86.70  Aligned_cols=168  Identities=13%  Similarity=0.155  Sum_probs=118.9

Q ss_pred             EEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCC
Q psy12911         92 FMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYP  171 (356)
Q Consensus        92 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (356)
                      ++.+.+..|.+-|+++|....+. ..+.|.++.|.  ..+++++.|+.+|.|..+|++.+.     ++...         
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~--~s~nLv~~GcRngeI~~iDLR~rn-----qG~~~---------  290 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFA--GSDNLVFNGCRNGEIFVIDLRCRN-----QGNGW---------  290 (425)
T ss_pred             ecccccceeEEEEeecccccccc-cchhHHHHHhc--ccCCeeEecccCCcEEEEEeeecc-----cCCCc---------
Confidence            55667788999999988765555 67889999998  878899999999999999998751     11000         


Q ss_pred             eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeec-CCCCCCCeEEEeecCCeEEEEEeCCCCC-CCcceeeee
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFR-DKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKCH  249 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~~  249 (356)
                              ...+               .-|...++++.... +    ...|++.+.+|+|++||++.... +-+.++.+|
T Consensus       291 --------~a~r---------------lyh~Ssvtslq~Lq~s----~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH  343 (425)
T KOG2695|consen  291 --------CAQR---------------LYHDSSVTSLQILQFS----QQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH  343 (425)
T ss_pred             --------ceEE---------------EEcCcchhhhhhhccc----cceEeeccCcCceeEeeehhhhcccceeeeecc
Confidence                    0000               12455666666555 3    67899999999999999976521 237778888


Q ss_pred             cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC----ccceEEEEEC
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM----DMSISTCALN  312 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s  312 (356)
                      ....         .-.-+-..+....++++++|...|||.++.|.++.++.-.    +..+.+++|.
T Consensus       344 vN~~---------a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  344 VNLS---------AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             cccc---------cccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            6532         1222345566788999999999999999999998877633    2345566654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.06  E-value=6.3e-07  Score=84.14  Aligned_cols=259  Identities=13%  Similarity=0.149  Sum_probs=161.1

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeC---C---CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC---CC
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSW---D---NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC---DK   98 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~---d---g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg   98 (356)
                      +.+.-..++|-.||   .++|+.+.   .   ..++||+-+.   .+..+...-.+--.+++|.|.|++||+...   ..
T Consensus       208 ~dd~~~~ISWRGDG---~yFAVss~~~~~~~~R~iRVy~ReG---~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~  281 (928)
T PF04762_consen  208 WDDGRVRISWRGDG---EYFAVSSVEPETGSRRVIRVYSREG---ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH  281 (928)
T ss_pred             cCCCceEEEECCCC---cEEEEEEEEcCCCceeEEEEECCCc---eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence            56677799999999   99999875   2   5799999763   222233233344457899999999998765   45


Q ss_pred             eEEEEEcCCCceee----ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC--ceEEEeCC--Ce--eEEEec
Q psy12911         99 TVKCWDLASNQSMQ----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ--PIMTINLP--ER--CYCADV  168 (356)
Q Consensus        99 ~i~vwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~--~~--~~~~~~  168 (356)
                      .|.+|.-+.-+.-.    +......|..+.|+  +++..|+....|. |.+|-..+..  ..+.+..+  ..  .+.+++
T Consensus       282 ~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn--~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp  358 (928)
T PF04762_consen  282 DVVFFERNGLRHGEFTLRFDPEEEKVIELAWN--SDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP  358 (928)
T ss_pred             EEEEEecCCcEeeeEecCCCCCCceeeEEEEC--CCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence            67888755433222    22456789999999  9999999987665 9999877654  22333322  22  244444


Q ss_pred             CCC-eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC-CCc--c
Q psy12911        169 DYP-LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDN--F  244 (356)
Q Consensus       169 ~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~~~--~  244 (356)
                      ..+ .+.+.+.++.+..+++.-                 .+..++.........+..-....+.+-.++.... .+.  +
T Consensus       359 e~p~~L~v~t~~g~~~~~~~~~-----------------~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~  421 (928)
T PF04762_consen  359 EKPLRLHVLTSNGQYEIYDFAW-----------------DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSY  421 (928)
T ss_pred             CCCCEEEEEecCCcEEEEEEEE-----------------EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhce
Confidence            333 566777767777666532                 1111111111122333444444566665543321 222  2


Q ss_pred             eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee--------cCCCC----------CCccce
Q psy12911        245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK--------LKPSE----------AMDMSI  306 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~----------~~~~~v  306 (356)
                      .+....            +|.+++|++++..+|+-..||.|.+|.......        ...+.          .....+
T Consensus       422 ~l~~~~------------~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (928)
T PF04762_consen  422 ELELPS------------PVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSL  489 (928)
T ss_pred             EEcCCC------------CcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccE
Confidence            222222            799999999998899999999999998543221        11111          123467


Q ss_pred             EEEEECCCCCEEEEEecc
Q psy12911        307 STCALNHNGQIFAYAVSY  324 (356)
Q Consensus       307 ~~~~~s~~~~~l~~~s~~  324 (356)
                      ..++|..+...++....+
T Consensus       490 ~~~~~~~~~~~~~~~~~~  507 (928)
T PF04762_consen  490 RQLAWLNDDTLLVLSDSD  507 (928)
T ss_pred             EEEEEeCCCEEEEEEecC
Confidence            889998888877777654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.02  E-value=4e-07  Score=86.99  Aligned_cols=196  Identities=10%  Similarity=0.053  Sum_probs=127.7

Q ss_pred             eeEEEecCCCCCceEEEEEe-CCCeEEEEeccCCCceeeeeeccC-----------------CcceeEEEEcc-CCCeEE
Q psy12911         32 ISCMAFSPSTLPQYFLIAGS-WDNNVRCWEVEPNGKTIPKSMQGM-----------------SEPVLDVAWID-DGTKVF   92 (356)
Q Consensus        32 V~~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~-----------------~~~v~~~~~s~-~~~~l~   92 (356)
                      -..+++++++   +.|+++. .++.|+++|..++  . +.++.+.                 -..-..++|+| ++..++
T Consensus       626 P~GIavd~~g---n~LYVaDt~n~~Ir~id~~~~--~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyV  699 (1057)
T PLN02919        626 PQGLAYNAKK---NLLYVADTENHALREIDFVNE--T-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYI  699 (1057)
T ss_pred             CcEEEEeCCC---CEEEEEeCCCceEEEEecCCC--E-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEE
Confidence            4678888877   6555554 4578999998662  1 1222110                 11235799999 555666


Q ss_pred             EEcCCCeEEEEEcCCCceeeeccc---------------CCCeeEEEEEeCCCCC-eEEEEECCCeEEEEeCCCCCceEE
Q psy12911         93 MAGCDKTVKCWDLASNQSMQVAQH---------------DAPVKTCHWIKAPNYT-CLMTGSWDKTLKFWDLRTPQPIMT  156 (356)
Q Consensus        93 ~~~~dg~i~vwd~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~  156 (356)
                      +.+.++.|++||..++....+.+.               -.....++++  +++. ++++-+.++.|++||+.++.....
T Consensus       700 ad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavs--pdG~~LYVADs~n~~Irv~D~~tg~~~~~  777 (1057)
T PLN02919        700 AMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLS--PDLKELYIADSESSSIRALDLKTGGSRLL  777 (1057)
T ss_pred             EECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEe--CCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence            667789999999987765432211               1235678999  8887 455556678999999987653211


Q ss_pred             Ee------------------------CCCeeEEEecCCCeEEEEecCCeEEEEeCCCCcccccccc-----------Ccc
Q psy12911        157 IN------------------------LPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE-----------SPL  201 (356)
Q Consensus       157 ~~------------------------~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~  201 (356)
                      ..                        .+...++++.++..+++-..++.|++||..++........           ...
T Consensus       778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~  857 (1057)
T PLN02919        778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ  857 (1057)
T ss_pred             EecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence            10                        0112455667777777778899999999987643211110           011


Q ss_pred             cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC
Q psy12911        202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN  239 (356)
Q Consensus       202 ~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~  239 (356)
                      -.....++++++    +..+++-+.++.|++||++...
T Consensus       858 l~~P~GIavd~d----G~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        858 LSEPAGLALGEN----GRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             cCCceEEEEeCC----CCEEEEECCCCEEEEEECCCCc
Confidence            135678999998    7788888899999999997764

>KOG4714|consensus

Probab=99.01  E-value=7.9e-09  Score=78.30  Aligned_cols=72  Identities=25%  Similarity=0.236  Sum_probs=60.5

Q ss_pred             ceeEEEEccC-CCeEEEEcCCCeEEEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC
Q psy12911         78 PVLDVAWIDD-GTKVFMAGCDKTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT  150 (356)
Q Consensus        78 ~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  150 (356)
                      .|.+++-.|. ...+++|+.||.+-+||.+......  +..|+.+++.+.|+| .++..|+++++||.+..||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHp-k~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHP-KNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccC-CCchheeEecCCCcEEEEcCCC
Confidence            4778888884 4467778889999999999875443  678999999999997 7888999999999999999654

>KOG2695|consensus

Probab=98.99  E-value=1.3e-09  Score=85.68  Aligned_cols=129  Identities=12%  Similarity=0.189  Sum_probs=102.4

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC----CceeeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEEEE
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN----GKTIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~----~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw  103 (356)
                      ++.|.++.|...+   +++..|+.+|.|.++|+...    +.+. ..+ .|...|+++..-. ++++|.+.+.+|+|++|
T Consensus       252 ksDVfAlQf~~s~---nLv~~GcRngeI~~iDLR~rnqG~~~~a-~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy  326 (425)
T KOG2695|consen  252 KSDVFALQFAGSD---NLVFNGCRNGEIFVIDLRCRNQGNGWCA-QRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLY  326 (425)
T ss_pred             chhHHHHHhcccC---CeeEecccCCcEEEEEeeecccCCCcce-EEE-EcCcchhhhhhhccccceEeeccCcCceeEe
Confidence            5688899999877   89999999999999999873    2222 333 3999999998877 78899999999999999


Q ss_pred             EcCCCce---ee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe
Q psy12911        104 DLASNQS---MQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER  162 (356)
Q Consensus       104 d~~~~~~---~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  162 (356)
                      |.+.-++   +. ..+|...-.-+-++-.+....+++++.|-..|||.++.+..+.++..+..
T Consensus       327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s  389 (425)
T KOG2695|consen  327 DLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS  389 (425)
T ss_pred             eehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence            9986655   33 66676554444444346777889999999999999999999998886653

>KOG1832|consensus

Probab=98.99  E-value=7.1e-10  Score=97.66  Aligned_cols=228  Identities=17%  Similarity=0.223  Sum_probs=152.1

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      -++..+.++.|....+|++|+-+.   ++|++|+..|.|++|++.++  .......+|..+|+.+.=+.+|..+++.+.-
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~---~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGT---NHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCC---ceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeeccc
Confidence            356677788899999999999998   99999999999999999984  3336788999999999999999987776553


Q ss_pred             C--eEEEEEcCC-CceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEE
Q psy12911         98 K--TVKCWDLAS-NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAV  174 (356)
Q Consensus        98 g--~i~vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (356)
                      .  -..+|++.+ +.....+   ..-.++.|+  .....-+.|+......+||+.++..+.++-.+.-            
T Consensus      1165 S~PlsaLW~~~s~~~~~Hsf---~ed~~vkFs--n~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~------------ 1227 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSF---DEDKAVKFS--NSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV------------ 1227 (1516)
T ss_pred             cCchHHHhccccccCccccc---cccceeehh--hhHHHHHhcccccceEEEecccCcHHHHhcCcch------------
Confidence            3  467899865 2222211   234567887  4444444455556788999999887766432110            


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                                               .....-.+..|+|+    ..+++   .||  .+||.+..  ..++.|.....   
T Consensus      1228 -------------------------~~~y~~n~a~FsP~----D~LIl---ndG--vLWDvR~~--~aIh~FD~ft~--- 1268 (1516)
T KOG1832|consen 1228 -------------------------TSSYSNNLAHFSPC----DTLIL---NDG--VLWDVRIP--EAIHRFDQFTD--- 1268 (1516)
T ss_pred             -------------------------hhhhhccccccCCC----cceEe---eCc--eeeeeccH--HHHhhhhhhee---
Confidence                                     01122256677777    33332   344  46888765  44555443322   


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                               -..=.|+|.|..++.-++     |||+++-+.++....-..  ..+.|+..|..+...-
T Consensus      1269 ---------~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq--c~VtFNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1269 ---------YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ--CAVTFNSTGDVMYAML 1320 (1516)
T ss_pred             ---------cccccccCCCceEEeech-----hhhhHHHHHHhcCccccc--eEEEeccCccchhhhh
Confidence                     112348888887776553     899988887776653322  4677888777665543

>KOG0882|consensus

Probab=98.98  E-value=2.6e-08  Score=81.30  Aligned_cols=259  Identities=14%  Similarity=0.016  Sum_probs=170.1

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccC-CCceeeeeeccCCcceeEEEEccCCCeEEEEcC-CCeEEEEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEP-NGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKCWD  104 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd  104 (356)
                      -|.+.|+.+.-+..    +++.+++.||.++.|.-.. .+...++.+..|...|.+++.+-++.++.+.+. |..++++|
T Consensus         7 mhrd~i~hv~~tka----~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    7 MHRDVITHVFPTKA----KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             cccceeeeEeeehh----heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence            48888888877665    6999999999999998765 566777888899999999999999999999887 99999999


Q ss_pred             cCCCceeeecccCCCeeEEEEEeCCCC----CeEEEEECCCeEEEEeCCCCCc-e-EEEeCCC---eeEEEecCCCeEEE
Q psy12911        105 LASNQSMQVAQHDAPVKTCHWIKAPNY----TCLMTGSWDKTLKFWDLRTPQP-I-MTINLPE---RCYCADVDYPLAVV  175 (356)
Q Consensus       105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~-~-~~~~~~~---~~~~~~~~~~~~~~  175 (356)
                      ++.-..+........-..+.|.. ..|    .+-++.-.++.+.++|-...-+ . ..-..|.   .+..+...++.+++
T Consensus        83 vEn~DminmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS  161 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS  161 (558)
T ss_pred             eeccchhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence            98766553222222222233331 222    2233344578899999765432 2 2222222   34445566678888


Q ss_pred             EecCCeEEEEeCCCCccccc-------------cccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFK-------------KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKD  242 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~  242 (356)
                      ....|.|.-|.....-+..+             ......+....++.++|+    +..+.+-+.|..|+++++..+..  
T Consensus       162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~----g~qistl~~DrkVR~F~~KtGkl--  235 (558)
T KOG0882|consen  162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD----GAQISTLNPDRKVRGFVFKTGKL--  235 (558)
T ss_pred             ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc----cCcccccCcccEEEEEEeccchh--
Confidence            88889999999874110000             001123456789999999    78888889999999999877632  


Q ss_pred             cceeeee-----cCCCCCC-----------------CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC
Q psy12911        243 NFTFKCH-----RSNGGAG-----------------GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK  297 (356)
Q Consensus       243 ~~~~~~~-----~~~~~~~-----------------~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~  297 (356)
                      ++.+...     ......-                 .-.....-+.+.|...|++|+-|+-=| |+|.++.++++.+
T Consensus       236 vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r  311 (558)
T KOG0882|consen  236 VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR  311 (558)
T ss_pred             hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence            2211110     0000000                 000111345677888899999887665 7888888776544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.95  E-value=2.4e-09  Score=58.46  Aligned_cols=37  Identities=32%  Similarity=0.593  Sum_probs=35.0

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEe
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE   60 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~   60 (356)
                      .+..+.+|.+.|++|+|+|++   .+|++|+.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~---~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDG---NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTS---SEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEeccc---ccceeeCCCCEEEEEC
Confidence            467889999999999999998   9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275|consensus

Probab=98.94  E-value=5.5e-08  Score=86.29  Aligned_cols=184  Identities=14%  Similarity=0.121  Sum_probs=135.8

Q ss_pred             CCCeEEEEcCCCeEEEEEcCCCceeeecccC-CCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eE
Q psy12911         87 DGTKVFMAGCDKTVKCWDLASNQSMQVAQHD-APVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CY  164 (356)
Q Consensus        87 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~  164 (356)
                      ++..++.|+....+..+|+++.+..+...-. +.|.-++    .+++.+.+|...|+|.+-|.++.+.++++..|.. +.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR----~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS  221 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR----YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS  221 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE----ecCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence            3456777777778888999988877644433 3466665    5678999999999999999999999999998875 66


Q ss_pred             EEecCCCeEEEEec---------CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911        165 CADVDYPLAVVGTA---------GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV  235 (356)
Q Consensus       165 ~~~~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  235 (356)
                      .++..++.|++++.         |.-|++||++........   +......-+.|+|.-   ...+++++..|...+-|.
T Consensus       222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI---~~~~~P~flrf~Psl---~t~~~V~S~sGq~q~vd~  295 (1118)
T KOG1275|consen  222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI---QFPYGPQFLRFHPSL---TTRLAVTSQSGQFQFVDT  295 (1118)
T ss_pred             eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCc---ccccCchhhhhcccc---cceEEEEecccceeeccc
Confidence            79999999888765         567899999976432211   223334667777774   568999999999999883


Q ss_pred             CCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911        236 NPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD  289 (356)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd  289 (356)
                      ..-.......+..+....         .+..+++|++|+.||.|..+|.|.+|.
T Consensus       296 ~~lsNP~~~~~~v~p~~s---------~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  296 ATLSNPPAGVKMVNPNGS---------GISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccCCCccceeEEccCCC---------cceeEEecCCCceEEEecccCcEeeec
Confidence            222112222332222210         589999999999999999999999997

>KOG4714|consensus

Probab=98.94  E-value=1.2e-08  Score=77.41  Aligned_cols=194  Identities=12%  Similarity=0.099  Sum_probs=119.8

Q ss_pred             eeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-------------ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEE
Q psy12911         79 VLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-------------VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF  145 (356)
Q Consensus        79 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i  145 (356)
                      ++.+.++-+ -.|+++..++.+.......+.+..             +..|.++-.+-+.+  -.+..+++++.||.+.+
T Consensus        39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s--~~~t~V~~~~~dg~~~v  115 (319)
T KOG4714|consen   39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACT--MTDNRVCIGYADGSLAV  115 (319)
T ss_pred             EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCccccc--ccCCceEecCCCceEEE
Confidence            566666543 356666666666655544333222             22333332222222  33567999999999999


Q ss_pred             EeCCCCCce-EEEe---CCCeeEEEecCCCeEEEE-----ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCC
Q psy12911        146 WDLRTPQPI-MTIN---LPERCYCADVDYPLAVVG-----TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKK  216 (356)
Q Consensus       146 wd~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  216 (356)
                      ++.+.-..+ ..+.   ......+..-.++.+.++     ..-+..+.|+++..........  ....+.+++-+|..  
T Consensus       116 ~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~--~~~~v~~l~~hp~q--  191 (319)
T KOG4714|consen  116 FSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK--ALDAVTALCSHPAQ--  191 (319)
T ss_pred             EechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc--ccccchhhhCCccc--
Confidence            997652111 1111   111111222222333322     2235566777765433222111  22338888888874  


Q ss_pred             CCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCC-CCEEEEEcCCCeEEEEEcCc
Q psy12911        217 QPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV-HGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       217 ~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~~~l~s~~~dg~i~iwd~~~  292 (356)
                       ...+++|+.||.+.+||++... .+...++.|+.           +|+.+-|+|. +..|+++++||.+..||..+
T Consensus       192 -q~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~-----------~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  192 -QHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKA-----------EIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             -ccEEEEecCCCeEEEEEccccc-chHHHHHHhhh-----------hhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence             5788899999999999998774 56777888988           8999999996 48899999999999999874

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.94  E-value=5.5e-07  Score=77.60  Aligned_cols=250  Identities=11%  Similarity=0.031  Sum_probs=144.1

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeE-EEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEE
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLD-VAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTC  123 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~  123 (356)
                      ..++.++.+|.+..+|.+++. .. -..... ..+.+ ...  .+..++.+..++.+..+|.++|+.+.......+...+
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~-~~-W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~  195 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGE-VA-WQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL  195 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCC-Cc-ccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence            466777889999999998743 22 222211 22221 111  2346777788999999999999987533222111100


Q ss_pred             --EEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe------------eEEEecCCCeEEEEecCCeEEEEeCCC
Q psy12911        124 --HWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER------------CYCADVDYPLAVVGTAGRGIVLYQLEG  189 (356)
Q Consensus       124 --~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~d~~i~i~d~~~  189 (356)
                        .-+|...+..++.++.+|.+..+|..+++.+...+....            .......++.+++++.++.+..+|..+
T Consensus       196 ~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t  275 (394)
T PRK11138        196 RGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS  275 (394)
T ss_pred             cCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence              011111233567778899999999999987766542210            011112356778888899999999998


Q ss_pred             CccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEE
Q psy12911        190 KPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVF  269 (356)
Q Consensus       190 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  269 (356)
                      ++...+....    ....+..  .    +..+++++.+|.+..+|...+  +.+.........          ...+...
T Consensus       276 G~~~W~~~~~----~~~~~~~--~----~~~vy~~~~~g~l~ald~~tG--~~~W~~~~~~~~----------~~~sp~v  333 (394)
T PRK11138        276 GQIVWKREYG----SVNDFAV--D----GGRIYLVDQNDRVYALDTRGG--VELWSQSDLLHR----------LLTAPVL  333 (394)
T ss_pred             CCEEEeecCC----CccCcEE--E----CCEEEEEcCCCeEEEEECCCC--cEEEcccccCCC----------cccCCEE
Confidence            8654433211    1111222  2    457788888999999888655  333322110000          1122222


Q ss_pred             eCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEE-EEECCCCCEEEEEeccC
Q psy12911        270 HPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSIST-CALNHNGQIFAYAVSYD  325 (356)
Q Consensus       270 sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~s~~d  325 (356)
                        .+.+|+.++.||.|++.|..+|+.+...+.....+.+ ..+ .++ .|+.++.++
T Consensus       334 --~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~-~l~v~t~~G  386 (394)
T PRK11138        334 --YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD-KLLIQARDG  386 (394)
T ss_pred             --ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC-EEEEEeCCc
Confidence              2567788899999999999999987766533232222 122 233 566665443

>KOG2066|consensus

Probab=98.92  E-value=1.2e-07  Score=83.08  Aligned_cols=183  Identities=15%  Similarity=0.126  Sum_probs=130.2

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  108 (356)
                      .+.++|++++.     ++|+-|..+|.|++++...+  .  .....|+..      ..+|.++++|+.||+|.|-.+-+.
T Consensus        39 ~D~is~~av~~-----~~~~~GtH~g~v~~~~~~~~--~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~  103 (846)
T KOG2066|consen   39 NDAISCCAVHD-----KFFALGTHRGAVYLTTCQGN--P--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD  103 (846)
T ss_pred             hhHHHHHHhhc-----ceeeeccccceEEEEecCCc--c--ccccccccc------ccCCceEEEecCCCcEEEeeccCC
Confidence            46778888874     68999999999999998762  2  333345544      568999999999999999999998


Q ss_pred             ceeeecccCCCeeEEEEEeCCC-----CCeEEEEECCCeEEEEeCCC---CCceEEEeCCCeeEEEecCCCeEEEEecCC
Q psy12911        109 QSMQVAQHDAPVKTCHWIKAPN-----YTCLMTGSWDKTLKFWDLRT---PQPIMTINLPERCYCADVDYPLAVVGTAGR  180 (356)
Q Consensus       109 ~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  180 (356)
                      +.........++.+++++  |+     .+.+++|+.-| +.++.-+=   ...+..-...+.+.++.+.+++++-+..+|
T Consensus       104 ~~~~~~df~rpiksial~--Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G  180 (846)
T KOG2066|consen  104 DEITQYDFKRPIKSIALH--PDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG  180 (846)
T ss_pred             ccceeEecCCcceeEEec--cchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC
Confidence            888877888999999999  55     56799999888 77765321   123323345567899999999988887766


Q ss_pred             eEEEEeCCCCccccccccCc----ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911        181 GIVLYQLEGKPQEFKKTESP----LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN  236 (356)
Q Consensus       181 ~i~i~d~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  236 (356)
                       |++||...+..........    .......+.|.++     ..+++|- ..+|+|..++
T Consensus       181 -v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-----~~LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  181 -VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-----DRLVIGW-GDSVKICSIK  233 (846)
T ss_pred             -cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-----CeEEEec-CCeEEEEEEe
Confidence             8999998875432222211    1112344556555     4555554 4467787776

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.92  E-value=5.8e-09  Score=56.93  Aligned_cols=37  Identities=27%  Similarity=0.619  Sum_probs=34.9

Q ss_pred             eeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911         68 IPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD  104 (356)
Q Consensus        68 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  104 (356)
                      +...+.+|.+.|++|+|+|++++|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4578899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066|consensus

Probab=98.90  E-value=3e-07  Score=80.65  Aligned_cols=157  Identities=13%  Similarity=0.160  Sum_probs=116.3

Q ss_pred             ceEEeCCCCCCeeEEEecCC-------------CCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC
Q psy12911         21 DFEVVSPPEDSISCMAFSPS-------------TLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD   87 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~-------------~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~   87 (356)
                      .+..+..|.+.|.-..+.-+             |   .++++|+.||+|.|-.+.++.......   ...++.+++++|+
T Consensus        50 ~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~G---ey~asCS~DGkv~I~sl~~~~~~~~~d---f~rpiksial~Pd  123 (846)
T KOG2066|consen   50 KFFALGTHRGAVYLTTCQGNPKTNFDHSSSILEG---EYVASCSDDGKVVIGSLFTDDEITQYD---FKRPIKSIALHPD  123 (846)
T ss_pred             ceeeeccccceEEEEecCCcccccccccccccCC---ceEEEecCCCcEEEeeccCCccceeEe---cCCcceeEEeccc
Confidence            44557778888887776655             6   999999999999999988744333223   4578999999997


Q ss_pred             -----CCeEEEEcCCCeEEEEEcC---CCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC
Q psy12911         88 -----GTKVFMAGCDKTVKCWDLA---SNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL  159 (356)
Q Consensus        88 -----~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  159 (356)
                           .+.+++|+.-| +.++.-+   ....+......++|.++.|.    |+++|-++.+| |++||+.+++.+..++.
T Consensus       124 ~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~----g~lIAWand~G-v~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  124 FSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR----GNLIAWANDDG-VKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             hhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec----CcEEEEecCCC-cEEEeccccceeeccCC
Confidence                 56899999888 7777533   22223356678999999997    67888888776 99999999998888876


Q ss_pred             CCee-------EEEecCCCeEEEEecCCeEEEEeCCC
Q psy12911        160 PERC-------YCADVDYPLAVVGTAGRGIVLYQLEG  189 (356)
Q Consensus       160 ~~~~-------~~~~~~~~~~~~~~~d~~i~i~d~~~  189 (356)
                      +...       ..+.+.....++.+...+|++..++.
T Consensus       198 p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~  234 (846)
T KOG2066|consen  198 PSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKK  234 (846)
T ss_pred             CCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEec
Confidence            6532       23344445556667777889988883

>KOG1008|consensus

Probab=98.89  E-value=3.3e-09  Score=90.25  Aligned_cols=203  Identities=14%  Similarity=0.192  Sum_probs=136.1

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-CCCeEEEEcC----CCeEEE
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-DGTKVFMAGC----DKTVKC  102 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~----dg~i~v  102 (356)
                      ....+.|+++..+. +..++++|..+|.|.+-.+......-.....++..+.++++|++ |.+.||+|-.    |..+.|
T Consensus        55 dtqy~kcva~~y~~-d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   55 DTQYVKCVASFYGN-DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             cCCCceeehhhcCC-chhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            34577888887665 12588999999999999887643333345667889999999998 6667777643    678999


Q ss_pred             EEcCCC--cee---eecc-cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeC-CCeeEEEec-CCCeE
Q psy12911        103 WDLASN--QSM---QVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINL-PERCYCADV-DYPLA  173 (356)
Q Consensus       103 wd~~~~--~~~---~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~-~~~~~~~~~-~~~~~  173 (356)
                      ||+.++  .+.   .+.. ......+++|.  .+.+++++|.....+.++|++.. .....+.. -.+...+++ .++++
T Consensus       134 wdi~s~ltvPke~~~fs~~~l~gqns~cwl--rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSSSTLDGQNSVCWL--RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYF  211 (783)
T ss_pred             eecccccCCCccccccccccccCccccccc--cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCce
Confidence            999877  221   1222 44556688998  88899999999999999999843 23333332 223455565 44455


Q ss_pred             EEEecCCeEEEEe-CCCCcccccccc---CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911        174 VVGTAGRGIVLYQ-LEGKPQEFKKTE---SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN  236 (356)
Q Consensus       174 ~~~~~d~~i~i~d-~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  236 (356)
                      +. ..|+.|.+|| .++-+.++....   .+...++..++|.|...  +...+..-..+.|+++++.
T Consensus       212 cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--glla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  212 CS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--GLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ec-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--chhhhhccCcceEEEeccc
Confidence            44 4599999999 444333333222   22334688999999842  3444444566789999874

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.87  E-value=1.2e-05  Score=64.39  Aligned_cols=250  Identities=9%  Similarity=0.045  Sum_probs=132.3

Q ss_pred             eEEEecCCCCCceEEEEEeCCCe-EEEEeccCCCceeeeeeccCCcce--eEEEEccCCCeEEEEcC-----CCeEEEEE
Q psy12911         33 SCMAFSPSTLPQYFLIAGSWDNN-VRCWEVEPNGKTIPKSMQGMSEPV--LDVAWIDDGTKVFMAGC-----DKTVKCWD  104 (356)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~~dg~-i~vw~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~-----dg~i~vwd  104 (356)
                      ..++.+|..  +..++.+-.-|+ ..+||..++.  ....+....+.-  =.-.||+||++|++.-.     .|.|-|||
T Consensus         8 H~~a~~p~~--~~avafaRRPG~~~~v~D~~~g~--~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    8 HGVAAHPTR--PEAVAFARRPGTFALVFDCRTGQ--LLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             cceeeCCCC--CeEEEEEeCCCcEEEEEEcCCCc--eeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            367788854  377777877764 7789988733  223333222221  13679999999998644     58999999


Q ss_pred             cC-CCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeE
Q psy12911        105 LA-SNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGI  182 (356)
Q Consensus       105 ~~-~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  182 (356)
                      .. +-+.+. +..|.-.-..+.+.  ||++.|+.+-  |-|.-- ..+++....+..                  -+..+
T Consensus        84 ~~~~~~ri~E~~s~GIGPHel~l~--pDG~tLvVAN--GGI~Th-pd~GR~kLNl~t------------------M~psL  140 (305)
T PF07433_consen   84 AARGYRRIGEFPSHGIGPHELLLM--PDGETLVVAN--GGIETH-PDSGRAKLNLDT------------------MQPSL  140 (305)
T ss_pred             CcCCcEEEeEecCCCcChhhEEEc--CCCCEEEEEc--CCCccC-cccCceecChhh------------------cCCce
Confidence            98 333332 55555556677788  9998887763  333211 111211111110                  01112


Q ss_pred             EEEeCCCCcccccccc--CcccccceEEEeecCCCCCCCeEEEeecCCeE-----EEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        183 VLYQLEGKPQEFKKTE--SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRV-----AIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       183 ~i~d~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i-----~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      ...|..++....+...  ..+...+.-+++.++    +..++..-..|.-     -+.-.+...  .+..+.....    
T Consensus       141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~----G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~----  210 (305)
T PF07433_consen  141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGD----GTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEE----  210 (305)
T ss_pred             EEEecCCCceeeeeecCccccccceeeEEecCC----CcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChH----
Confidence            2222222221111111  124456667777766    3333333222210     011111111  0111111000    


Q ss_pred             CCcccccceEEEEEeCCCCEEEEEc-CCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                      ....-...+-+|++++++.++++.+ ..+.+.+||..+++.+....-  ..+..++-.+++ ++++++
T Consensus       211 ~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  211 QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCC
Confidence            0000011789999999998776554 568999999999998876653  345677777777 555554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.87  E-value=1.4e-06  Score=69.67  Aligned_cols=215  Identities=14%  Similarity=0.093  Sum_probs=127.0

Q ss_pred             CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEE-EecCCCeEEE
Q psy12911         97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYC-ADVDYPLAVV  175 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  175 (356)
                      +|+|..||..+|+.+...............+.+++..+++++.++.|..||..+++.+..+........ ....++.+++
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v   81 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYV   81 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccc
Confidence            689999999999887644332222222211114567788888999999999999999988887554222 3556677888


Q ss_pred             EecCCeEEEEeCCCCcccccc-ccCc-ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKK-TESP-LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG  253 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~-~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  253 (356)
                      ++.++.+..+|..++...... .... .............    +..++++..++.+..+|.+.+  +.+..........
T Consensus        82 ~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~l~~~d~~tG--~~~w~~~~~~~~~  155 (238)
T PF13360_consen   82 GTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD----GDRLYVGTSSGKLVALDPKTG--KLLWKYPVGEPRG  155 (238)
T ss_dssp             EETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE----TTEEEEEETCSEEEEEETTTT--EEEEEEESSTT-S
T ss_pred             ccceeeeEecccCCcceeeeeccccccccccccccCceEe----cCEEEEEeccCcEEEEecCCC--cEEEEeecCCCCC
Confidence            888899999999888765552 2211 0111112222222    457888888999999998766  4555554422110


Q ss_pred             CCCCcccccceEEEEEeCCCCEEEEEcCCCe-EEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGT-FSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      . ........+..-....++ .++.++.++. +.+ |+.+++.+....  ...+..+ ...++..|+.++.
T Consensus       156 ~-~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~  220 (238)
T PF13360_consen  156 S-SPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSS  220 (238)
T ss_dssp             S---EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEET
T ss_pred             C-cceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeC
Confidence            0 000000012222222344 6666777775 566 999998664333  2222221 3467777777763

...

>KOG1920|consensus

Probab=98.86  E-value=1.8e-06  Score=79.43  Aligned_cols=199  Identities=12%  Similarity=0.075  Sum_probs=133.1

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEc---
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL---  105 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~---  105 (356)
                      .+.|.++.|..+.   .-++.+...|.|.+-|.++....+   ...-...|.+++|+||++.++..+..+++.+-+-   
T Consensus        68 d~~i~s~~fl~d~---~~i~v~~~~G~iilvd~et~~~ei---vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~  141 (1265)
T KOG1920|consen   68 DDEIVSVQFLADT---NSICVITALGDIILVDPETLELEI---VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFE  141 (1265)
T ss_pred             CcceEEEEEeccc---ceEEEEecCCcEEEEcccccceee---eeeccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence            3689999999998   888888899999999887733322   3334678999999999999998888787766432   


Q ss_pred             -CCCcee--------------------eecc---------------------cCCCeeEEEEEeCCCCCeEEEEE-----
Q psy12911        106 -ASNQSM--------------------QVAQ---------------------HDAPVKTCHWIKAPNYTCLMTGS-----  138 (356)
Q Consensus       106 -~~~~~~--------------------~~~~---------------------~~~~v~~~~~~~~~~~~~l~~~~-----  138 (356)
                       -..+.+                    ++.+                     -...=++|.|-  .||+++++..     
T Consensus       142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR--gDg~~fAVs~~~~~~  219 (1265)
T KOG1920|consen  142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR--GDGEYFAVSFVESET  219 (1265)
T ss_pred             chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc--cCCcEEEEEEEeccC
Confidence             111100                    1111                     11122458898  9999998832     


Q ss_pred             CCCeEEEEeCCCCCceEE---EeCCCeeEEEecCCCeEEEE---ecCCeEEEEeCCCCccccccccCccccc-ceEEEee
Q psy12911        139 WDKTLKFWDLRTPQPIMT---INLPERCYCADVDYPLAVVG---TAGRGIVLYQLEGKPQEFKKTESPLKYQ-NRCIAIF  211 (356)
Q Consensus       139 ~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~-i~~~~~~  211 (356)
                      ..+.|++||-+ +..-..   ..+-..++++.+.|..+++.   ..++.|.+|.-++-.........+.... +..++|+
T Consensus       220 ~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn  298 (1265)
T KOG1920|consen  220 GTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN  298 (1265)
T ss_pred             CceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeec
Confidence            23789999965 432111   12233567777878777775   3456899998876543323333333333 8999999


Q ss_pred             cCCCCCCCeEEE---eecCCeEEEEEeCCCCC
Q psy12911        212 RDKKKQPAGYGL---GSVEGRVAIQYVNPANP  240 (356)
Q Consensus       212 ~~~~~~~~~~~~---~~~dg~i~i~~~~~~~~  240 (356)
                      .+    +..|++   ......|++|-+.+...
T Consensus       299 s~----sdiLAv~~~~~e~~~v~lwt~~NyhW  326 (1265)
T KOG1920|consen  299 SN----SDILAVVTSNLENSLVQLWTTGNYHW  326 (1265)
T ss_pred             CC----CCceeeeecccccceEEEEEecCeEE
Confidence            99    777777   55566699998876543

>KOG1275|consensus

Probab=98.85  E-value=8e-08  Score=85.28  Aligned_cols=178  Identities=15%  Similarity=0.165  Sum_probs=129.5

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEE
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTC  123 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~  123 (356)
                      ..++.|+-...+..+|+.+.  +..+........|+-++.  +++++++|...|+|.+-|.++.+.+. +..|++.|.++
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~--~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTE--KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             cceeecchhhheeeeecccc--eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            56777776777888888773  333333333334666654  57899999999999999999998887 88999999988


Q ss_pred             EEEeCCCCCeEEEEEC---------CCeEEEEeCCCCCceEEEeCCCe--eEEEecCC-CeEEEEecCCeEEEEeCCCCc
Q psy12911        124 HWIKAPNYTCLMTGSW---------DKTLKFWDLRTPQPIMTINLPER--CYCADVDY-PLAVVGTAGRGIVLYQLEGKP  191 (356)
Q Consensus       124 ~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~  191 (356)
                      ..    .|++|++|+.         |.-|++||++..+.+.-+..+..  .+.+.+.- ..+++++..|...+-|..+-.
T Consensus       224 Dv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls  299 (1118)
T KOG1275|consen  224 DV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS  299 (1118)
T ss_pred             ec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence            75    4788999885         45689999998877666654443  23333333 478999999999999944322


Q ss_pred             cc--cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEE
Q psy12911        192 QE--FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQY  234 (356)
Q Consensus       192 ~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  234 (356)
                      .+  ......+....+..+.++++    ++.++.|..+|.|.+|-
T Consensus       300 NP~~~~~~v~p~~s~i~~fDiSsn----~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  300 NPPAGVKMVNPNGSGISAFDISSN----GDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCccceeEEccCCCcceeEEecCC----CceEEEecccCcEeeec
Confidence            21  11222244556899999999    89999999999999997

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.82  E-value=1.4e-08  Score=79.09  Aligned_cols=229  Identities=15%  Similarity=0.212  Sum_probs=135.9

Q ss_pred             CCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc---e--e-eeccc------------CCCeeEEEEEeCCCCCeEEE
Q psy12911         75 MSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ---S--M-QVAQH------------DAPVKTCHWIKAPNYTCLMT  136 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~--~-~~~~~------------~~~v~~~~~~~~~~~~~l~~  136 (356)
                      ....|+++.|...|.+|++|...|.|.+|.-+...   .  . .+..|            ...|..+.|........++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34679999999999999999999999999865432   1  0 12333            35688899974334456777


Q ss_pred             EECCCeEEEEeCCCCC--ceEEEeCCCeeEEEecCCC-----eEEEE---ecCCeEEEEeCCCCccccccccCcccccce
Q psy12911        137 GSWDKTLKFWDLRTPQ--PIMTINLPERCYCADVDYP-----LAVVG---TAGRGIVLYQLEGKPQEFKKTESPLKYQNR  206 (356)
Q Consensus       137 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~  206 (356)
                      .+.|.+|++|.+....  .+..-.... .+.....++     .+..+   -.|..|...       +.+.....|...+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~-~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-------p~rvyaNaH~yhiN  176 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSD-SFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-------PCRVYANAHPYHIN  176 (460)
T ss_pred             ecCCceeeeeeeecccchhhhcccccc-ccccccCCCcCCHHHhhcccccccceEEEec-------cceeccccceeEee
Confidence            8889999999987642  111111100 000000110     00000   011111111       11223346778889


Q ss_pred             EEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC-CcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCe
Q psy12911        207 CIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK-DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGT  284 (356)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~  284 (356)
                      ++++..+    . ..+..+.|-.|.+|+++..... .+..++.|...      ....-|++..|+|.. ..+.-.+..|.
T Consensus       177 SiS~NsD----~-et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nme------eLteVItSaeFhp~~cn~fmYSsSkG~  245 (460)
T COG5170         177 SISFNSD----K-ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNME------ELTEVITSAEFHPEMCNVFMYSSSKGE  245 (460)
T ss_pred             eeeecCc----h-heeeeccceeeeeccccccCCceEEEeccCccHH------HHHHHHhhcccCHhHcceEEEecCCCc
Confidence            9999988    3 4455667888999988654321 11222233210      011158889999975 56667778899


Q ss_pred             EEEEEcCcc------eecCC----------CCCCccceEEEEECCCCCEEEEEe
Q psy12911        285 FSFWDKDAR------TKLKP----------SEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       285 i~iwd~~~~------~~~~~----------~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                      |++-|++..      +.+..          +..-...|.++.|+++|+++++-+
T Consensus       246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd  299 (460)
T COG5170         246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD  299 (460)
T ss_pred             EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec
Confidence            999998732      11111          112245788999999999998764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.80  E-value=5.5e-06  Score=71.46  Aligned_cols=231  Identities=10%  Similarity=0.036  Sum_probs=137.1

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCc--------cee-EEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecc
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE--------PVL-DVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ  115 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--------~v~-~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  115 (356)
                      ..+++++.+|.+.-+|.+++...-...+.....        .+. .+..  ++..++.++.++.+..+|.++|+.+....
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            577788888999999988743222112221000        000 1111  35577888889999999999999876444


Q ss_pred             cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeE------EEecCCCeEEEEecCCeEEEEeCCC
Q psy12911        116 HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCY------CADVDYPLAVVGTAGRGIVLYQLEG  189 (356)
Q Consensus       116 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~d~~i~i~d~~~  189 (356)
                      ....+.+--.   -.+..++.+..++.|..+|.++++.+..+.......      ........+++++.++.+..+|..+
T Consensus       148 ~~~~~~ssP~---v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~  224 (394)
T PRK11138        148 VAGEALSRPV---VSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQ  224 (394)
T ss_pred             CCCceecCCE---EECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccC
Confidence            3333332111   123466777889999999999999988876542211      1112235678888899999999988


Q ss_pred             CccccccccC-ccc-cc---ceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccce
Q psy12911        190 KPQEFKKTES-PLK-YQ---NRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAV  264 (356)
Q Consensus       190 ~~~~~~~~~~-~~~-~~---i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  264 (356)
                      +......... +.. ..   ...+..+|--  .+..+++++.+|.+..+|...+  +.+......             ..
T Consensus       225 G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v--~~~~vy~~~~~g~l~ald~~tG--~~~W~~~~~-------------~~  287 (394)
T PRK11138        225 GQLIWQQRISQPTGATEIDRLVDVDTTPVV--VGGVVYALAYNGNLVALDLRSG--QIVWKREYG-------------SV  287 (394)
T ss_pred             ChhhheeccccCCCccchhcccccCCCcEE--ECCEEEEEEcCCeEEEEECCCC--CEEEeecCC-------------Cc
Confidence            7643332110 000 00   0011111210  0346777778898888888665  334332211             11


Q ss_pred             EEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911        265 NGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS  299 (356)
Q Consensus       265 ~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  299 (356)
                      ..+..  .+..|+.++.+|.+..+|..+|+.+...
T Consensus       288 ~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        288 NDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             cCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence            12222  4567777888999999999999876544

>KOG2114|consensus

Probab=98.80  E-value=1.9e-06  Score=76.45  Aligned_cols=217  Identities=15%  Similarity=0.108  Sum_probs=137.5

Q ss_pred             EEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCC-eeEEEEEeCCCCCeEEEEECCC-----eEEEEeCCCC-----
Q psy12911         83 AWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAP-VKTCHWIKAPNYTCLMTGSWDK-----TLKFWDLRTP-----  151 (356)
Q Consensus        83 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~-----  151 (356)
                      +|++.+..++.|+.+|.|.+.+-.-.....+..+... |..+...  .+..+|++.++|+     .|+|||++.-     
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~--~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYIL--NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcc--cCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            4678888999999999998887443222336666666 5544443  4446788877775     4899998643     


Q ss_pred             -Cce---EEEe--CC-----CeeEEEecCCCeEEEEecCCeEEEEeCCC--CccccccccCcccccceEEEeecCCCCCC
Q psy12911        152 -QPI---MTIN--LP-----ERCYCADVDYPLAVVGTAGRGIVLYQLEG--KPQEFKKTESPLKYQNRCIAIFRDKKKQP  218 (356)
Q Consensus       152 -~~~---~~~~--~~-----~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  218 (356)
                       +++   +.+.  .+     ..+++++.+-..+++|-.+|.|.++.-+-  ............+.+|+.+++..+    +
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d----~  183 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD----G  183 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC----C
Confidence             233   1122  11     23555666667899999999999985432  111122233345689999999998    5


Q ss_pred             CeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC
Q psy12911        219 AGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP  298 (356)
Q Consensus       219 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  298 (356)
                      ..++.+..-..|.+|.+...+ .....+..|..           .++|..+++....+++++.. .|.+|+.....+-..
T Consensus       184 ~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~-----------~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfa  250 (933)
T KOG2114|consen  184 KSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGI-----------SLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFA  250 (933)
T ss_pred             ceeEEEEecceeEEEEecCCC-cceeeeccCCc-----------cceeeecCCCCccEEEecCc-eEEEEcCCCcceeee
Confidence            554555556678899998554 23344555544           78999998766645555443 699999886666566


Q ss_pred             CC-CCccceEEEEECCCCCEEEEE
Q psy12911        299 SE-AMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       299 ~~-~~~~~v~~~~~s~~~~~l~~~  321 (356)
                      +. +|.....   |..-|.+|++.
T Consensus       251 f~~g~kk~~~---~~~~g~~L~v~  271 (933)
T KOG2114|consen  251 FEVGEKKEML---VFSFGLLLCVT  271 (933)
T ss_pred             ecCCCeEEEE---EEecCEEEEEE
Confidence            66 6654433   22334455544

>KOG1645|consensus

Probab=98.80  E-value=7.8e-07  Score=71.94  Aligned_cols=250  Identities=14%  Similarity=0.139  Sum_probs=139.5

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCC-CeEEEEc
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG-TKVFMAG   95 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~   95 (356)
                      ..++..+.+.+|...|..++|+|..  ..+|..++.+..|+|.|+++  ......+..+ ..+++++|.-|. .+|++|.
T Consensus       181 ~~fkssq~lp~~g~~IrdlafSp~~--~GLl~~asl~nkiki~dlet--~~~vssy~a~-~~~wSC~wDlde~h~IYaGl  255 (463)
T KOG1645|consen  181 HDFKSSQILPGEGSFIRDLAFSPFN--EGLLGLASLGNKIKIMDLET--SCVVSSYIAY-NQIWSCCWDLDERHVIYAGL  255 (463)
T ss_pred             CCcchhhcccccchhhhhhccCccc--cceeeeeccCceEEEEeccc--ceeeeheecc-CCceeeeeccCCcceeEEec
Confidence            3455566788999999999999997  23788999999999999998  4454566656 889999998865 4677888


Q ss_pred             CCCeEEEEEcCCCceee--ecc--cCCCeeEEEEEeC----CCCCeEEEEECCCeEEEEeCCC----CCceEEEeCCCee
Q psy12911         96 CDKTVKCWDLASNQSMQ--VAQ--HDAPVKTCHWIKA----PNYTCLMTGSWDKTLKFWDLRT----PQPIMTINLPERC  163 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~--~~~--~~~~v~~~~~~~~----~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~  163 (356)
                      ..|.|.+||++..+-..  +.+  ...+|..++..+.    +.+.+++....+  +..|++.-    .-++..++.++.+
T Consensus       256 ~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~c  333 (463)
T KOG1645|consen  256 QNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGIC  333 (463)
T ss_pred             cCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcce
Confidence            89999999998654321  111  2334444433210    334444444432  55665542    2234445555555


Q ss_pred             EEEecCC--CeEEEEecC-------CeEEE-EeCCCCccccccccCcccc------cceEEEeecCCCCCCCeEEEeecC
Q psy12911        164 YCADVDY--PLAVVGTAG-------RGIVL-YQLEGKPQEFKKTESPLKY------QNRCIAIFRDKKKQPAGYGLGSVE  227 (356)
Q Consensus       164 ~~~~~~~--~~~~~~~~d-------~~i~i-~d~~~~~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~d  227 (356)
                      +.+...+  +.+++....       ..|.. -|.+.+...........+.      .-..+.-.++.   ...+.++...
T Consensus       334 ismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n---n~iv~~gd~t  410 (463)
T KOG1645|consen  334 ISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN---NYIVVVGDST  410 (463)
T ss_pred             eeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc---cEEEEecCCc
Confidence            5555554  333332221       01111 0111111000000000000      01111112221   2344555566


Q ss_pred             CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCC-C-CEEEEEcCCCeEEEEEcC
Q psy12911        228 GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV-H-GTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       228 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~-~~l~s~~~dg~i~iwd~~  291 (356)
                      +.+.+||....  ..++++....            +|..++...- + .+|++-. |..++||..+
T Consensus       411 n~lil~D~~s~--evvQ~l~~~e------------pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  411 NELILQDPHSF--EVVQTLALSE------------PVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             ceeEEeccchh--heeeecccCc------------ceeecceeecCCcchhhhee-cceEEEEecC
Confidence            78899988766  4555555443            6777765442 3 5666664 5578888754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.70  E-value=9.1e-06  Score=63.19  Aligned_cols=192  Identities=9%  Similarity=0.188  Sum_probs=112.3

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec-------cCCcceeEEEEccCC------C
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-------GMSEPVLDVAWIDDG------T   89 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~------~   89 (356)
                      .+.+...-.=+.++||||+   .+||.+...|+|++||+...  .+ ..+.       .-..+|..+.|.+..      .
T Consensus        37 qVpkD~~PQWRkl~WSpD~---tlLa~a~S~G~i~vfdl~g~--~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~  110 (282)
T PF15492_consen   37 QVPKDPNPQWRKLAWSPDC---TLLAYAESTGTIRVFDLMGS--EL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY  110 (282)
T ss_pred             ecCCCCCchheEEEECCCC---cEEEEEcCCCeEEEEecccc--ee-EEcCcccccCCccccceeeeEeeccccccccce
Confidence            3344444456789999999   99999999999999999752  11 1111       123567777776521      2


Q ss_pred             eEEEEcCCCeEEEEEcCCCcee--------eec-ccCCCeeEEEEEeCCCCCeEEEEECCCe-----------EEEEeCC
Q psy12911         90 KVFMAGCDKTVKCWDLASNQSM--------QVA-QHDAPVKTCHWIKAPNYTCLMTGSWDKT-----------LKFWDLR  149 (356)
Q Consensus        90 ~l~~~~~dg~i~vwd~~~~~~~--------~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~-----------i~iwd~~  149 (356)
                      .|++-..+|.++-|-+..+...        .+. .+...|.++.++  |..++|+.|+....           +..|.+-
T Consensus       111 ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~--p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL  188 (282)
T PF15492_consen  111 ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH--PKHRLLLVGGCEQNQDGMSKASSCGLTAWRIL  188 (282)
T ss_pred             eEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc--CCCCEEEEeccCCCCCccccccccCceEEEEc
Confidence            4666677888887776433211        122 246789999999  88788887764322           3333333


Q ss_pred             CCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCe
Q psy12911        150 TPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~  229 (356)
                      ++.+-...-       .....+........   .+|.+-+..  ...........|..++.+|+    +..|++...+|.
T Consensus       189 ~~~Pyyk~v-------~~~~~~~~~~~~~~---~~~~~~~~~--~fs~~~~~~d~i~kmSlSPd----g~~La~ih~sG~  252 (282)
T PF15492_consen  189 SDSPYYKQV-------TSSEDDITASSKRR---GLLRIPSFK--FFSRQGQEQDGIFKMSLSPD----GSLLACIHFSGS  252 (282)
T ss_pred             CCCCcEEEc-------cccCcccccccccc---ceeecccee--eeeccccCCCceEEEEECCC----CCEEEEEEcCCe
Confidence            322211110       00000011111111   122211100  00111234567899999999    899999999999


Q ss_pred             EEEEEeCCC
Q psy12911        230 VAIQYVNPA  238 (356)
Q Consensus       230 i~i~~~~~~  238 (356)
                      |.+|++..-
T Consensus       253 lsLW~iPsL  261 (282)
T PF15492_consen  253 LSLWEIPSL  261 (282)
T ss_pred             EEEEecCcc
Confidence            999999765

>KOG3621|consensus

Probab=98.67  E-value=2.2e-05  Score=68.40  Aligned_cols=151  Identities=13%  Similarity=0.086  Sum_probs=110.9

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS  107 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  107 (356)
                      |...|.--++...+   ++++.|+.-|.+++|+-..+ ........+-.+.+..+..+++..++|+|+..|.|.++-+..
T Consensus        32 ~~~~v~lTc~dst~---~~l~~GsS~G~lyl~~R~~~-~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   32 FPARVKLTCVDATE---EYLAMGSSAGSVYLYNRHTG-EMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             CcceEEEEEeecCC---ceEEEecccceEEEEecCch-hhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence            33444444555666   89999999999999998773 333233434556777788899988999999999999998876


Q ss_pred             Cceee-------ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-----CceEEEeCCCeeEEEecCCCeEEE
Q psy12911        108 NQSMQ-------VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-----QPIMTINLPERCYCADVDYPLAVV  175 (356)
Q Consensus       108 ~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  175 (356)
                      +....       -..|...|++++|+  +++..+++|...|+|..-.+.+.     .....+.....++.++....++++
T Consensus       108 ~~p~~~~~~t~~d~~~~~rVTal~Ws--~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLV  185 (726)
T KOG3621|consen  108 ELPRDLDYVTPCDKSHKCRVTALEWS--KNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLV  185 (726)
T ss_pred             cCCCcceeeccccccCCceEEEEEec--ccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehH
Confidence            44321       12378899999999  99999999999999998888772     223334456678888888887777


Q ss_pred             EecCCeEEE
Q psy12911        176 GTAGRGIVL  184 (356)
Q Consensus       176 ~~~d~~i~i  184 (356)
                      ++....+..
T Consensus       186 Stl~r~~Lc  194 (726)
T KOG3621|consen  186 STLTRCILC  194 (726)
T ss_pred             hhhhhhhee
Confidence            766555543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.65  E-value=5.8e-05  Score=64.00  Aligned_cols=262  Identities=14%  Similarity=0.125  Sum_probs=133.1

Q ss_pred             cCCCCCceEEEEE---------eCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC
Q psy12911         38 SPSTLPQYFLIAG---------SWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        38 ~~~~~~~~~l~~~---------~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  108 (356)
                      |||+   ++++..         +..+.+.|||+++.  .. ..+......+....|||+|+.++... ++.|.+++..++
T Consensus         1 S~d~---~~~l~~~~~~~~~r~s~~~~y~i~d~~~~--~~-~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~   73 (353)
T PF00930_consen    1 SPDG---KFVLFATNYTKQWRHSFKGDYYIYDIETG--EI-TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG   73 (353)
T ss_dssp             -TTS---SEEEEEEEEEEESSSEEEEEEEEEETTTT--EE-EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred             CCCC---CeEEEEECcEEeeeeccceeEEEEecCCC--ce-EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence            5777   666663         23467999999882  22 23332367899999999999998876 689999998877


Q ss_pred             ceeeeccc------------------CCCeeEEEEEeCCCCCeEEEEECC-CeE--------------------------
Q psy12911        109 QSMQVAQH------------------DAPVKTCHWIKAPNYTCLMTGSWD-KTL--------------------------  143 (356)
Q Consensus       109 ~~~~~~~~------------------~~~v~~~~~~~~~~~~~l~~~~~d-g~i--------------------------  143 (356)
                      +..++...                  -+.-..+-|+  ||+++|+....| ..|                          
T Consensus        74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WS--pd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~  151 (353)
T PF00930_consen   74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWS--PDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA  151 (353)
T ss_dssp             EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE---TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT
T ss_pred             CeEEeccccceeEEcCccceeccccccccccceEEC--CCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC
Confidence            65543211                  1234668899  999988876543 222                          


Q ss_pred             ---------EEEeCCCCCceE-EEe----CCC-eeEE--EecCCCeEEEE--ecC---CeEEEEeCCCCcccccccc--C
Q psy12911        144 ---------KFWDLRTPQPIM-TIN----LPE-RCYC--ADVDYPLAVVG--TAG---RGIVLYQLEGKPQEFKKTE--S  199 (356)
Q Consensus       144 ---------~iwd~~~~~~~~-~~~----~~~-~~~~--~~~~~~~~~~~--~~d---~~i~i~d~~~~~~~~~~~~--~  199 (356)
                               .++|+.+++... ...    ... ....  +..++..+++.  ..+   ..+.++|..++........  .
T Consensus       152 G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~  231 (353)
T PF00930_consen  152 GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD  231 (353)
T ss_dssp             TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred             CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence                     223333322210 000    000 1111  11222212221  111   2344555554432211111  1


Q ss_pred             cccccceEEEee-cCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE-EEEeCCCCEEE
Q psy12911        200 PLKYQNRCIAIF-RDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG-IVFHPVHGTLA  277 (356)
Q Consensus       200 ~~~~~i~~~~~~-~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~sp~~~~l~  277 (356)
                      ..-.......+. +++   ..++.....+|.-+||-++..... ...+....-           .|.. +.++++++.|.
T Consensus       232 ~Wv~~~~~~~~~~~~~---~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~-----------~V~~i~~~d~~~~~iy  296 (353)
T PF00930_consen  232 GWVDVYDPPHFLGPDG---NEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDW-----------EVTSILGWDEDNNRIY  296 (353)
T ss_dssp             SSSSSSSEEEE-TTTS---SEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS------------EEEEEEEECTSSEEE
T ss_pred             cceeeecccccccCCC---CEEEEEEEcCCCcEEEEEcccccc-eeccccCce-----------eecccceEcCCCCEEE
Confidence            111122344444 442   455666667887777776654322 122222221           4644 67888876544


Q ss_pred             -EEcCC----CeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        278 -TVGSE----GTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       278 -s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                       ++..+    ..|+.-++..+..+..+....+.-..+.|||+|++++...+
T Consensus       297 f~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  297 FTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             EEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             EEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence             55543    25555666622333444433332278999999999987654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3617|consensus

Probab=98.65  E-value=1.4e-06  Score=77.18  Aligned_cols=71  Identities=14%  Similarity=0.310  Sum_probs=60.9

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  106 (356)
                      .+++++|+|..   -.|+.|-.-|.+.+|...+  .........|..+|..+.||++|..++++..-|.|.+|...
T Consensus        61 hatSLCWHpe~---~vLa~gwe~g~~~v~~~~~--~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   61 HATSLCWHPEE---FVLAQGWEMGVSDVQKTNT--TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ehhhhccChHH---HHHhhccccceeEEEecCC--ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            35679999997   7889999999999999877  33334455799999999999999999999999999999876

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.63  E-value=0.00011  Score=60.06  Aligned_cols=229  Identities=12%  Similarity=0.101  Sum_probs=132.5

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee------------
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ------------  112 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~------------  112 (356)
                      +.|+.|..+| +.++++.. ........  +...|..+...++-+.|++-+ |+.+.++++..-....            
T Consensus         8 ~~L~vGt~~G-l~~~~~~~-~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSD-PSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             CEEEEEECCC-EEEEEecC-CccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            7899999998 89999833 12222222  334499999999887777765 5999999987543332            


Q ss_pred             ---ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-----CceEEEeCCCeeEEEecCCCeEEEEecCCeEEE
Q psy12911        113 ---VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-----QPIMTINLPERCYCADVDYPLAVVGTAGRGIVL  184 (356)
Q Consensus       113 ---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  184 (356)
                         .......+...+......+...+.......|.+|.....     +..+.+..+..+..+.+.++.++++..++ ..+
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~-f~~  161 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG-FYL  161 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc-eEE
Confidence               112233444444111133444444455568888887653     57788888999999998888888888544 778


Q ss_pred             EeCCCCcccccc-ccCcc--------cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        185 YQLEGKPQEFKK-TESPL--------KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       185 ~d~~~~~~~~~~-~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      .|+.++...... .....        ......+.-.++    + .++.+. +..-.+.+.... +.....+.-..     
T Consensus       162 idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-e~Ll~~-~~~g~fv~~~G~-~~r~~~i~W~~-----  229 (275)
T PF00780_consen  162 IDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD----N-EFLLCY-DNIGVFVNKNGE-PSRKSTIQWSS-----  229 (275)
T ss_pred             EecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC----c-eEEEEe-cceEEEEcCCCC-cCcccEEEcCC-----
Confidence            888855322111 11000        011122222222    2 333333 333333333332 11112222222     


Q ss_pred             CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA  301 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  301 (356)
                             ....+++.  ..||++.+.+ .|.||++.++++++.+..
T Consensus       230 -------~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  230 -------APQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPL  265 (275)
T ss_pred             -------chhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEEC
Confidence                   35566663  4688777665 599999999998887764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1920|consensus

Probab=98.62  E-value=2.8e-05  Score=71.92  Aligned_cols=222  Identities=14%  Similarity=0.150  Sum_probs=134.2

Q ss_pred             CcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceE
Q psy12911         76 SEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIM  155 (356)
Q Consensus        76 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  155 (356)
                      ...|.++.|..+...++.+...|.|.+-|.++........-...|.+++|+  ||++.++..+..+++.+-+ .+..++.
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS--~Dee~l~liT~~~tll~mT-~~f~~i~  144 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWS--PDEELLALITGRQTLLFMT-KDFEPIA  144 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeec--CCCcEEEEEeCCcEEEEEe-ccccchh
Confidence            368999999999999999999999999999888776666678899999999  9999999998877776543 3333333


Q ss_pred             EEeCCC------eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe-----
Q psy12911        156 TINLPE------RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG-----  224 (356)
Q Consensus       156 ~~~~~~------~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----  224 (356)
                      ....+.      ..+.+.+....--.-+..|.....+........  ........-+.+.|-.|    +.++++.     
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~--~~~~~~~~~~~IsWRgD----g~~fAVs~~~~~  218 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKAL--EQIEQDDHKTSISWRGD----GEYFAVSFVESE  218 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccc--cchhhccCCceEEEccC----CcEEEEEEEecc
Confidence            222211      111111111000000011111111111000000  00012234467888888    7788873     


Q ss_pred             ecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc---CCCeEEEEEcCc---ceecCC
Q psy12911        225 SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG---SEGTFSFWDKDA---RTKLKP  298 (356)
Q Consensus       225 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~---~dg~i~iwd~~~---~~~~~~  298 (356)
                      .....+++||-+..   .-.+-.....           .-.+++|-|.|.++|+-.   .|+.|.+|.-+.   |+....
T Consensus       219 ~~~RkirV~drEg~---Lns~se~~~~-----------l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~  284 (1265)
T KOG1920|consen  219 TGTRKIRVYDREGA---LNSTSEPVEG-----------LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLP  284 (1265)
T ss_pred             CCceeEEEecccch---hhcccCcccc-----------cccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccC
Confidence            33378999988721   1111111111           345799999999998763   466899998552   233333


Q ss_pred             CCCCccceEEEEECCCCCEEEE
Q psy12911        299 SEAMDMSISTCALNHNGQIFAY  320 (356)
Q Consensus       299 ~~~~~~~v~~~~~s~~~~~l~~  320 (356)
                      +......|..++|+.++..||+
T Consensus       285 ~p~de~~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  285 FPLDEKEVEELAWNSNSDILAV  306 (1265)
T ss_pred             CcccccchheeeecCCCCceee
Confidence            4444556999999999999998

>KOG1832|consensus

Probab=98.61  E-value=9.7e-08  Score=84.69  Aligned_cols=188  Identities=13%  Similarity=0.154  Sum_probs=130.4

Q ss_pred             eeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCC--eEEE
Q psy12911         69 PKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDK--TLKF  145 (356)
Q Consensus        69 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~i  145 (356)
                      .+.+..|....+|++|+-+.++|+.|+..|.|+++++.+|.... ..+|.++|+-+.-+  .+|..+++.+.-.  -..+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs--~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPS--VDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccccccccccc--CCcceeeeeccccCchHHH
Confidence            35667788999999999999999999999999999999998766 78899999999877  8888877766443  3668


Q ss_pred             EeCCC-CCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe
Q psy12911        146 WDLRT-PQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG  224 (356)
Q Consensus       146 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  224 (356)
                      |++.+ +.+.+++...                                             .++.|+..    ...-+.|
T Consensus      1172 W~~~s~~~~~Hsf~ed---------------------------------------------~~vkFsn~----~q~r~~g 1202 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDED---------------------------------------------KAVKFSNS----LQFRALG 1202 (1516)
T ss_pred             hccccccCcccccccc---------------------------------------------ceeehhhh----HHHHHhc
Confidence            88754 3344444322                                             23334333    2233444


Q ss_pred             ecCCeEEEEEeCCCCCCCcce-eeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCc
Q psy12911        225 SVEGRVAIQYVNPANPKDNFT-FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMD  303 (356)
Q Consensus       225 ~~dg~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  303 (356)
                      +......+||+.+..  ++.+ +.+...        ..+.-++..|+|+..+++   .||.  +||++..+.++.|...+
T Consensus      1203 t~~d~a~~YDvqT~~--~l~tylt~~~~--------~~y~~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft 1267 (1516)
T KOG1832|consen 1203 TEADDALLYDVQTCS--PLQTYLTDTVT--------SSYSNNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFT 1267 (1516)
T ss_pred             ccccceEEEecccCc--HHHHhcCcchh--------hhhhccccccCCCcceEe---eCce--eeeeccHHHHhhhhhhe
Confidence            555566777776553  2333 222111        112346788999988776   5664  89999988888887655


Q ss_pred             cceEEEEECCCCCEEEEEec
Q psy12911        304 MSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       304 ~~v~~~~~s~~~~~l~~~s~  323 (356)
                      ..+ .-.|+|.|..++.-+.
T Consensus      1268 ~~~-~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1268 DYG-GGGFHPSGNEVIINSE 1286 (1516)
T ss_pred             ecc-cccccCCCceEEeech
Confidence            332 3469999999998764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.61  E-value=3.7e-06  Score=71.26  Aligned_cols=258  Identities=13%  Similarity=0.155  Sum_probs=133.3

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCce-----------------------------------------ee
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKT-----------------------------------------IP   69 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-----------------------------------------~~   69 (356)
                      .|+.+.|.++.   .-|++|...|.|.||....+...                                         ..
T Consensus         3 ~v~~vs~a~~t---~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~   79 (395)
T PF08596_consen    3 SVTHVSFAPET---LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPL   79 (395)
T ss_dssp             -EEEEEEETTT---TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEE
T ss_pred             eEEEEEecCCC---ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCch
Confidence            58899999997   78999999999999876542100                                         00


Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeee---cc------cCCCeeEEEEEe---CCCC---CeE
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV---AQ------HDAPVKTCHWIK---APNY---TCL  134 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~------~~~~v~~~~~~~---~~~~---~~l  134 (356)
                      ..+....++|++++.|.-| ++|.|..+|.+.|.|++....+..   ..      ....++++.|..   ..|+   -.+
T Consensus        80 ~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             EEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             hheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            1222346789999998555 999999999999999988776542   22      345688888873   1233   468


Q ss_pred             EEEECCCeEEEEeCCC-CCceEEEeCCCeeEEEecCCCeEEEEecC--CeEEEEeCCCCccccccccCcccccceEEEee
Q psy12911        135 MTGSWDKTLKFWDLRT-PQPIMTINLPERCYCADVDYPLAVVGTAG--RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIF  211 (356)
Q Consensus       135 ~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  211 (356)
                      ++|+..|.+.+|.+.- ..-........    ..       ....+  ..|..++..++........ ...      ...
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~----~~-------~~~~~~i~~I~~i~~~~G~~a~At~~-~~~------~l~  220 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAG----AT-------TNHDSPILSIIPINADTGESALATIS-AMQ------GLS  220 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEE----EE---------SS----EEEEEETTT--B-B-BHH-HHH------GGG
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEee----cc-------ccCCCceEEEEEEECCCCCcccCchh-Hhh------ccc
Confidence            8889999999997641 11111110000    00       00111  1233334443321111000 000      000


Q ss_pred             cCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEE-----eCCCCEEEEEcCCCeEE
Q psy12911        212 RDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVF-----HPVHGTLATVGSEGTFS  286 (356)
Q Consensus       212 ~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-----sp~~~~l~s~~~dg~i~  286 (356)
                      +. . .-..+++...+..++++.....  +..+.......           ....+.+     ...+..|++-..+|.|+
T Consensus       221 ~g-~-~i~g~vVvvSe~~irv~~~~~~--k~~~K~~~~~~-----------~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~  285 (395)
T PF08596_consen  221 KG-I-SIPGYVVVVSESDIRVFKPPKS--KGAHKSFDDPF-----------LCSSASVVPTISRNGGYCLVCLFNNGSIR  285 (395)
T ss_dssp             GT------EEEEEE-SSEEEEE-TT-----EEEEE-SS-E-----------EEEEEEEEEEE-EEEEEEEEEEETTSEEE
T ss_pred             cC-C-CcCcEEEEEcccceEEEeCCCC--cccceeecccc-----------ccceEEEEeecccCCceEEEEEECCCcEE
Confidence            00 0 0123555566778899876543  22222111100           2233344     23567888889999999


Q ss_pred             EEEcCcceecCCCCCC----ccceEEEEECCCCCEEEEEeccC
Q psy12911        287 FWDKDARTKLKPSEAM----DMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       287 iwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ++.+..-+.+..++-.    ...+....++++|..++..+...
T Consensus       286 i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE  328 (395)
T PF08596_consen  286 IYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSE  328 (395)
T ss_dssp             EEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSE
T ss_pred             EEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCccc
Confidence            9999887776654432    23556778899999888776544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114|consensus

Probab=98.60  E-value=2.2e-05  Score=69.94  Aligned_cols=202  Identities=15%  Similarity=0.170  Sum_probs=131.6

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcc-eeEEEEccCCCeEEEEcCCC-----eEEEEE
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEP-VLDVAWIDDGTKVFMAGCDK-----TVKCWD  104 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg-----~i~vwd  104 (356)
                      .|+|  |++.+   ..++.|+.+|.|.+++-.-   ...+.++.+... |..+....+..+|++.+.|+     .+++|+
T Consensus        27 ~isc--~~s~~---~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~   98 (933)
T KOG2114|consen   27 AISC--CSSST---GSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWD   98 (933)
T ss_pred             ceeE--EcCCC---ceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEec
Confidence            5555  55666   7899999999998887543   455677777777 55555444446888877764     489999


Q ss_pred             cCCC------cee---eecc-----cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC----C-CceEEEeCCCee--
Q psy12911        105 LASN------QSM---QVAQ-----HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT----P-QPIMTINLPERC--  163 (356)
Q Consensus       105 ~~~~------~~~---~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~-~~~~~~~~~~~~--  163 (356)
                      ++.-      +++   +...     ...++.+++.+  .+-..+++|-.+|.|..+.-.-    + +......+...+  
T Consensus        99 lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs--~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITg  176 (933)
T KOG2114|consen   99 LEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS--EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITG  176 (933)
T ss_pred             ccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE--ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCcee
Confidence            8743      222   2222     35678999999  8889999999999999885221    1 122222333333  


Q ss_pred             EEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCc
Q psy12911        164 YCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDN  243 (356)
Q Consensus       164 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~  243 (356)
                      +.+..++..++.+.....|.+|.+.++. +.......++....|.++++.    ...++++ .+..+.+|+.+..  .+.
T Consensus       177 L~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~----t~qfIca-~~e~l~fY~sd~~--~~c  248 (933)
T KOG2114|consen  177 LALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDG----TYQFICA-GSEFLYFYDSDGR--GPC  248 (933)
T ss_pred             eEEecCCceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCC----CccEEEe-cCceEEEEcCCCc--cee
Confidence            3444445554555666789999998665 444545567788889888887    2334444 4456888888755  445


Q ss_pred             ceee-eec
Q psy12911        244 FTFK-CHR  250 (356)
Q Consensus       244 ~~~~-~~~  250 (356)
                      +.+. +|+
T Consensus       249 faf~~g~k  256 (933)
T KOG2114|consen  249 FAFEVGEK  256 (933)
T ss_pred             eeecCCCe
Confidence            5555 443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.59  E-value=0.00017  Score=58.67  Aligned_cols=245  Identities=13%  Similarity=0.051  Sum_probs=143.6

Q ss_pred             EEEecCCCCCceEEEEEe----------CCCeEEEEeccCCCceeeeeeccC-C----cceeEEEEccCCCeEEEEc--C
Q psy12911         34 CMAFSPSTLPQYFLIAGS----------WDNNVRCWEVEPNGKTIPKSMQGM-S----EPVLDVAWIDDGTKVFMAG--C   96 (356)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~-~----~~v~~~~~s~~~~~l~~~~--~   96 (356)
                      .+..+|++   +.+++++          ..-.|.+||..+-.......+... .    .....++++.|+++++..-  -
T Consensus        40 ~~~~spdg---k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP  116 (342)
T PF06433_consen   40 NVALSPDG---KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP  116 (342)
T ss_dssp             EEEE-TTS---SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS
T ss_pred             ceeECCCC---CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCC
Confidence            45678998   8777753          234699999988322222233321 1    1234467888998877653  3


Q ss_pred             CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC-CCCceEEEe----CCCeeE----EEe
Q psy12911         97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR-TPQPIMTIN----LPERCY----CAD  167 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~----~~~~~~----~~~  167 (356)
                      -..|.|.|+..++.+....-.+ +..+  -|..+ +-+.+-+.||.+.-..+. .|+..++..    .....+    ...
T Consensus       117 a~SVtVVDl~~~kvv~ei~~PG-C~~i--yP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~  192 (342)
T PF06433_consen  117 ATSVTVVDLAAKKVVGEIDTPG-CWLI--YPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS  192 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEGTS-EEEE--EEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE
T ss_pred             CCeEEEEECCCCceeeeecCCC-EEEE--EecCC-CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceE
Confidence            5679999999888876443332 2222  22133 457788889999988887 455443221    111111    122


Q ss_pred             cCCCeEEEEecCCeEEEEeCCCCccccccccC----------cccccceEEEeecCCCCCCCeEEEee--------cCCe
Q psy12911        168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES----------PLKYQNRCIAIFRDKKKQPAGYGLGS--------VEGR  229 (356)
Q Consensus       168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~--------~dg~  229 (356)
                      ..+..++..+.+|.|+-.|+............          =..+.-.-+++++.    ...|.+--        .++.
T Consensus       193 ~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~----~~rlyvLMh~g~~gsHKdpg  268 (342)
T PF06433_consen  193 RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA----SGRLYVLMHQGGEGSHKDPG  268 (342)
T ss_dssp             TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT----TTEEEEEEEE--TT-TTS-E
T ss_pred             CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc----cCeEEEEecCCCCCCccCCc
Confidence            33456777888999999888876422111100          01233455677765    33333322        3445


Q ss_pred             EEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEE-EcCCCeEEEEEcCcceecCCCCC
Q psy12911        230 VAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLAT-VGSEGTFSFWDKDARTKLKPSEA  301 (356)
Q Consensus       230 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s-~~~dg~i~iwd~~~~~~~~~~~~  301 (356)
                      -.||-++..+.+.+..+....            ++.+|+.+.+.+ +|++ ...++.|.+||..+|+.+.+++.
T Consensus       269 teVWv~D~~t~krv~Ri~l~~------------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  269 TEVWVYDLKTHKRVARIPLEH------------PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEEE------------EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             eEEEEEECCCCeEEEEEeCCC------------ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            677777777667787777543            588999999874 6654 45689999999999999887763

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.57  E-value=1.6e-05  Score=64.53  Aligned_cols=274  Identities=14%  Similarity=0.141  Sum_probs=160.9

Q ss_pred             CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC----------CCeEEEEEcCCCceee---ecc-cC--
Q psy12911         54 NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC----------DKTVKCWDLASNQSMQ---VAQ-HD--  117 (356)
Q Consensus        54 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~---~~~-~~--  117 (356)
                      +.+.|+|.++  .+..-.+.  .+-.-.+..+|+++.++++..          .-.|.+||..+-+...   +.. +.  
T Consensus        17 ~rv~viD~d~--~k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~   92 (342)
T PF06433_consen   17 SRVYVIDADS--GKLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ   92 (342)
T ss_dssp             EEEEEEETTT--TEEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred             ceEEEEECCC--CcEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence            4788898877  23323332  233344678999999887543          3469999999876543   211 11  


Q ss_pred             --CCeeEEEEEeCCCCCeEEEEEC--CCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccc
Q psy12911        118 --APVKTCHWIKAPNYTCLMTGSW--DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQE  193 (356)
Q Consensus       118 --~~v~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  193 (356)
                        .....++++  .|+++++....  ...|.|.|+..++.+.++..+.-..........+.+.+.||.+.-..+......
T Consensus        93 ~~~~~~~~~ls--~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   93 VVPYKNMFALS--ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             BS--GGGEEE---TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred             ecccccceEEc--cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence              223446777  88888877543  457999999999999999998877666666678889999999999999854332


Q ss_pred             cccccCcc---cccc-eEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEE
Q psy12911        194 FKKTESPL---KYQN-RCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVF  269 (356)
Q Consensus       194 ~~~~~~~~---~~~i-~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  269 (356)
                      ........   ..++ ..-++...    +..++.-+.+|.|+-.++.....+....+..-.......+. ......-+++
T Consensus       171 ~~~~t~~F~~~~dp~f~~~~~~~~----~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~W-rPGG~Q~~A~  245 (342)
T PF06433_consen  171 AQKSTKVFDPDDDPLFEHPAYSRD----GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGW-RPGGWQLIAY  245 (342)
T ss_dssp             EEEEEEESSTTTS-B-S--EEETT----TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTE-EE-SSS-EEE
T ss_pred             eEeeccccCCCCcccccccceECC----CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCc-CCcceeeeee
Confidence            21111000   1111 11122222    45677788999999988876643332222211000000000 0012334788


Q ss_pred             eCCCCEEEEEcC---CC-------eEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEE-EeccCCcCCCccCCCCCC
Q psy12911        270 HPVHGTLATVGS---EG-------TFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAY-AVSYDWSKGHEHNNPNKG  338 (356)
Q Consensus       270 sp~~~~l~s~~~---dg-------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~s~~d~~~~~~~~~~~~~  338 (356)
                      ++..+.|+..-.   +|       .|.++|+.+++.+.++.. ..++.+|+.+.|.+=++. .+..  .....++|...+
T Consensus       246 ~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~--~~~l~v~D~~tG  322 (342)
T PF06433_consen  246 HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAG--DGTLDVYDAATG  322 (342)
T ss_dssp             ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETT--TTEEEEEETTT-
T ss_pred             ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCC--CCeEEEEeCcCC
Confidence            876655544321   22       488889999999998873 456889999998874444 3332  234556777655


Q ss_pred             cee
Q psy12911        339 NAI  341 (356)
Q Consensus       339 ~~~  341 (356)
                      ..+
T Consensus       323 k~~  325 (342)
T PF06433_consen  323 KLV  325 (342)
T ss_dssp             -EE
T ss_pred             cEE
Confidence            443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.57  E-value=1.7e-06  Score=73.76  Aligned_cols=75  Identities=21%  Similarity=0.373  Sum_probs=63.8

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  106 (356)
                      .....|.|++++|+.   +.|+.|+.||.|.+||...+   . ..+....-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus       257 pL~s~v~~ca~sp~E---~kLvlGC~DgSiiLyD~~~~---~-t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  257 PLPSQVICCARSPSE---DKLVLGCEDGSIILYDTTRG---V-TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             ecCCcceEEecCccc---ceEEEEecCCeEEEEEcCCC---e-eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            577899999999998   99999999999999998762   1 2222345678899999999999999999999999987


Q ss_pred             CC
Q psy12911        107 SN  108 (356)
Q Consensus       107 ~~  108 (356)
                      -.
T Consensus       330 Ls  331 (545)
T PF11768_consen  330 LS  331 (545)
T ss_pred             cC
Confidence            54

>KOG1645|consensus

Probab=98.57  E-value=2.7e-06  Score=68.92  Aligned_cols=94  Identities=14%  Similarity=0.148  Sum_probs=74.0

Q ss_pred             EEEEEcCCCceee-ecccCCCeeEEEEEeCCCCC-eEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCC---CeEE
Q psy12911        100 VKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYT-CLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDY---PLAV  174 (356)
Q Consensus       100 i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~  174 (356)
                      +++.+..+-+... +..+...|.+++|+  |..+ ++..++.+..|+|.|+++...+..+..+..+++.+++-   ..++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafS--p~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFS--PFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccC--ccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeE
Confidence            5555544444443 56788899999999  5444 78889999999999999999999999888777776654   4889


Q ss_pred             EEecCCeEEEEeCCCCccccc
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFK  195 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~  195 (356)
                      .|...|.|.+||++..+....
T Consensus       253 aGl~nG~VlvyD~R~~~~~~~  273 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPEGPLM  273 (463)
T ss_pred             EeccCceEEEEEccCCCchHh
Confidence            999999999999998764443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.56  E-value=0.00029  Score=58.47  Aligned_cols=279  Identities=11%  Similarity=0.097  Sum_probs=127.3

Q ss_pred             EecCCCCCceEEEEEeCCC--eEEEEeccCCCceeeeeeccCC-cceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee
Q psy12911         36 AFSPSTLPQYFLIAGSWDN--NVRCWEVEPNGKTIPKSMQGMS-EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ  112 (356)
Q Consensus        36 ~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  112 (356)
                      +|.++|  .++|+++..||  .+.+.|+.+  ... ..+.... .......++++++.++-......|+-.|+++.+...
T Consensus        42 ~ft~dG--~kllF~s~~dg~~nly~lDL~t--~~i-~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~  116 (386)
T PF14583_consen   42 CFTDDG--RKLLFASDFDGNRNLYLLDLAT--GEI-TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV  116 (386)
T ss_dssp             -B-TTS---EEEEEE-TTSS-EEEEEETTT---EE-EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred             CcCCCC--CEEEEEeccCCCcceEEEEccc--CEE-EECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence            567787  35555555565  455566666  333 3443332 334456778888887766556789999999988755


Q ss_pred             ecc-cCCCeeEEEEEeCCCCCeEEEEEC----------------------CCeEEEEeCCCCCceEEEeCCC--eeEEEe
Q psy12911        113 VAQ-HDAPVKTCHWIKAPNYTCLMTGSW----------------------DKTLKFWDLRTPQPIMTINLPE--RCYCAD  167 (356)
Q Consensus       113 ~~~-~~~~v~~~~~~~~~~~~~l~~~~~----------------------dg~i~iwd~~~~~~~~~~~~~~--~~~~~~  167 (356)
                      +.. ...-+-...|....++..++-.-.                      ...|.-.|+.+++....+....  .-+.++
T Consensus       117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fs  196 (386)
T PF14583_consen  117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFS  196 (386)
T ss_dssp             EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEE
T ss_pred             EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccC
Confidence            433 344444566754466665543211                      1245566777777655555444  233444


Q ss_pred             cCCCeEEE-Eec---CC-eEEEEeCCCCccccccccCcc-cccceEEEeecCCCCCCCeEEE-ee-cCC---eEEEEEeC
Q psy12911        168 VDYPLAVV-GTA---GR-GIVLYQLEGKPQEFKKTESPL-KYQNRCIAIFRDKKKQPAGYGL-GS-VEG---RVAIQYVN  236 (356)
Q Consensus       168 ~~~~~~~~-~~~---d~-~i~i~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~-~~-~dg---~i~i~~~~  236 (356)
                      +..+.+++ +..   +. .-+||-++......+.+.... ...+.-=-|.|+    +..+.. +. ..+   .|.-++..
T Consensus       197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~D----G~~i~y~~~~~~~~~~~i~~~d~~  272 (386)
T PF14583_consen  197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPD----GSTIWYDSYTPGGQDFWIAGYDPD  272 (386)
T ss_dssp             TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TT----SS-EEEEEEETTT--EEEEEE-TT
T ss_pred             CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCC----CCEEEEEeecCCCCceEEEeeCCC
Confidence            44444443 332   12 125565554332222222121 233344456777    333332 22 122   23333333


Q ss_pred             CCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC----------------eEEEEEcCcceecC---
Q psy12911        237 PANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG----------------TFSFWDKDARTKLK---  297 (356)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg----------------~i~iwd~~~~~~~~---  297 (356)
                      ..  +... +. ...           +...+-.++||++++-=+.|.                -|++++++.++...   
T Consensus       273 t~--~~~~-~~-~~p-----------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~  337 (386)
T PF14583_consen  273 TG--ERRR-LM-EMP-----------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLAR  337 (386)
T ss_dssp             T----EEE-EE-EE------------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE
T ss_pred             CC--CceE-EE-eCC-----------ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeee
Confidence            22  2211 11 111           344566778998887544432                56778887665321   


Q ss_pred             ------CCCCCcc-ceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCceeeecccccc
Q psy12911        298 ------PSEAMDM-SISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFED  349 (356)
Q Consensus       298 ------~~~~~~~-~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~~  349 (356)
                            .+.++.. .=-...|||||++|+..|.-           ...+.+|+-+++++
T Consensus       338 h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-----------~G~~~vY~v~i~~~  385 (386)
T PF14583_consen  338 HDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM-----------EGPPAVYLVEIPDD  385 (386)
T ss_dssp             -------BTTBSSTT----EE-TTSSEEEEEE-T-----------TSS-EEEEEE--CC
T ss_pred             ccCcceeecCCCccCCCCCccCCCCCEEEEECCC-----------CCCccEEEEeCccc
Confidence                  1221111 12467899999999999842           35688888888765

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.51  E-value=0.00015  Score=64.23  Aligned_cols=238  Identities=11%  Similarity=0.029  Sum_probs=127.8

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc--CCCeEEEEc---------CCCeEEEEEcCCCceeee
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID--DGTKVFMAG---------CDKTVKCWDLASNQSMQV  113 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~---------~dg~i~vwd~~~~~~~~~  113 (356)
                      ..++.++.++.|.-+|.+++...-......+...-..+.-+|  .+..++.++         .++.+..+|..+|+.+..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            467778889999999998843222222221100000111111  124455553         367899999999987652


Q ss_pred             cccC-C--------------------Ce-eEEEEEeCCCCCeEEEEECCC------------------eEEEEeCCCCCc
Q psy12911        114 AQHD-A--------------------PV-KTCHWIKAPNYTCLMTGSWDK------------------TLKFWDLRTPQP  153 (356)
Q Consensus       114 ~~~~-~--------------------~v-~~~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~  153 (356)
                      .... .                    .+ ...++.  +.+..++.++.++                  .|.-+|+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d--~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYD--PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEe--CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            2111 0                    01 122333  4456777776655                  799999999999


Q ss_pred             eEEEeCCCe----------eEEEe---cCCC---eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCC
Q psy12911        154 IMTINLPER----------CYCAD---VDYP---LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQ  217 (356)
Q Consensus       154 ~~~~~~~~~----------~~~~~---~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  217 (356)
                      +..++....          .....   .++.   .+++++.+|.+..+|.++++........     ...++..|+    
T Consensus       269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~~----  339 (488)
T cd00216         269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDPG----  339 (488)
T ss_pred             EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCCc----
Confidence            888763211          11111   2232   5778888999999999998755443211     001111111    


Q ss_pred             CCeEEE------------------eecCCeEEEEEeCCCCCCCcceeeeecCCCC-CCCcccccceEEEEEeCCCCEEEE
Q psy12911        218 PAGYGL------------------GSVEGRVAIQYVNPANPKDNFTFKCHRSNGG-AGGVQDIYAVNGIVFHPVHGTLAT  278 (356)
Q Consensus       218 ~~~~~~------------------~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~i~~sp~~~~l~s  278 (356)
                        .+.+                  ...+|.+.-.|...+  +.+.+......... ..+...  .-..+..  .+.+|+.
T Consensus       340 --~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG--~~~W~~~~~~~~~~~~~g~~~--~~~~~~~--~g~~v~~  411 (488)
T cd00216         340 --LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG--KVVWEKREGTIRDSWNIGFPH--WGGSLAT--AGNLVFA  411 (488)
T ss_pred             --eEEEccccccccCcccccCCCCCCCceEEEEEeCCCC--cEeeEeeCCccccccccCCcc--cCcceEe--cCCeEEE
Confidence              1211                  123455555555444  44444332210000 000000  0111222  4678889


Q ss_pred             EcCCCeEEEEEcCcceecCCCCC
Q psy12911        279 VGSEGTFSFWDKDARTKLKPSEA  301 (356)
Q Consensus       279 ~~~dg~i~iwd~~~~~~~~~~~~  301 (356)
                      ++.||.|+.+|.++|+.+.+.+.
T Consensus       412 g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         412 GAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             ECCCCeEEEEECCCCceeeEEEC
Confidence            99999999999999999887653

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.50  E-value=0.00017  Score=63.94  Aligned_cols=196  Identities=14%  Similarity=0.060  Sum_probs=110.6

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccC----Cccee--EEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCC
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM----SEPVL--DVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDA  118 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----~~~v~--~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  118 (356)
                      ..++.++.++.|.-.|..++...-.......    ...+.  .+... ++..++.++.++.|..+|.++|+.+....-..
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            4677778889999999987432211111110    00111  11111 22578888889999999999999875333222


Q ss_pred             C------e-eEEEEEeCCCCCeEEEEE---------CCCeEEEEeCCCCCceEEEeCCCe--------------------
Q psy12911        119 P------V-KTCHWIKAPNYTCLMTGS---------WDKTLKFWDLRTPQPIMTINLPER--------------------  162 (356)
Q Consensus       119 ~------v-~~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~--------------------  162 (356)
                      .      + .+..+.    +..++.++         .+|.+..+|..+++.+..++....                    
T Consensus       141 ~~~~~~~i~ssP~v~----~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         141 QVPPGYTMTGAPTIV----KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             CcCcceEecCCCEEE----CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            2      1 112222    23455543         368899999999998887765311                    


Q ss_pred             ----eEEEecCCCeEEEEecCC------------------eEEEEeCCCCccccccccCcccc----cceEEEeecCCCC
Q psy12911        163 ----CYCADVDYPLAVVGTAGR------------------GIVLYQLEGKPQEFKKTESPLKY----QNRCIAIFRDKKK  216 (356)
Q Consensus       163 ----~~~~~~~~~~~~~~~~d~------------------~i~i~d~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~  216 (356)
                          ...++.....+++++.++                  .|.-+|..+++.........+..    ......+.+....
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~  296 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK  296 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence                122233456788887665                  79999999887655543222211    0001111110000


Q ss_pred             CC---CeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911        217 QP---AGYGLGSVEGRVAIQYVNPANPKDNFTFK  247 (356)
Q Consensus       217 ~~---~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  247 (356)
                      ++   ..+++++.+|.+...|..++  +.+....
T Consensus       297 ~g~~~~~V~~g~~~G~l~ald~~tG--~~~W~~~  328 (488)
T cd00216         297 DGKPVPAIVHAPKNGFFYVLDRTTG--KLISARP  328 (488)
T ss_pred             CCCeeEEEEEECCCceEEEEECCCC--cEeeEeE
Confidence            02   25778888999888888766  4555443

The alignment model contains an 8-bladed beta-propeller.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.45  E-value=2.2e-06  Score=73.19  Aligned_cols=116  Identities=16%  Similarity=0.175  Sum_probs=82.7

Q ss_pred             eeEEEecCCCCCceEEEEE----eCCCe----EEEEeccCCCceee-eeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         32 ISCMAFSPSTLPQYFLIAG----SWDNN----VRCWEVEPNGKTIP-KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        32 V~~~~~~~~~~~~~~l~~~----~~dg~----i~vw~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      ..++.|+...  +..+.+.    +.+|.    -.+|++..+..... .+--.....|.+++++|+.+.|+.|+.||.|.+
T Consensus       208 Pl~~~Fs~~~--~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  208 PLDVEFSLNQ--PYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             cEEEEccCCC--CcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            3566777544  2445443    23443    34566655321111 122247789999999999999999999999999


Q ss_pred             EEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC
Q psy12911        103 WDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ  152 (356)
Q Consensus       103 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  152 (356)
                      ||...+... .....-..+.++|+  |+|..+++|+..|.+.+||+.-..
T Consensus       286 yD~~~~~t~-~~ka~~~P~~iaWH--p~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  286 YDTTRGVTL-LAKAEFIPTLIAWH--PDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEcCCCeee-eeeecccceEEEEc--CCCcEEEEEcCCceEEEEEeecCc
Confidence            998776433 33455668899999  999999999999999999986553

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.44  E-value=0.00033  Score=56.21  Aligned_cols=198  Identities=17%  Similarity=0.053  Sum_probs=114.4

Q ss_pred             EEEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCCCeEEEEecCCeEEEEeCCCCcccccccc-
Q psy12911        122 TCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE-  198 (356)
Q Consensus       122 ~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-  198 (356)
                      ++.|.  + ++.++++--..+.|..||..+++... +..+. ..+.+......++++... .+.++|..++........ 
T Consensus         4 gp~~d--~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWD--PRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPGPNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEE--TTTTEEEEEETTTTEEEEEETTTTEEEE-EESSSEEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred             ceEEE--CCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCCCceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence            56777  6 66777776678999999987765433 44333 333444334566666654 445558887643322222 


Q ss_pred             -Cc-ccccceEEEeecCCCCCCCeEEEeecC--------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEE
Q psy12911        199 -SP-LKYQNRCIAIFRDKKKQPAGYGLGSVE--------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIV  268 (356)
Q Consensus       199 -~~-~~~~i~~~~~~~~~~~~~~~~~~~~~d--------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  268 (356)
                       .. .....+.+++.++    +.+.++....        |.+..++.+ .  + ...+...-.           ..+.|+
T Consensus        80 ~~~~~~~~~ND~~vd~~----G~ly~t~~~~~~~~~~~~g~v~~~~~~-~--~-~~~~~~~~~-----------~pNGi~  140 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPD----GNLYVTDSGGGGASGIDPGSVYRIDPD-G--K-VTVVADGLG-----------FPNGIA  140 (246)
T ss_dssp             TTCSCTEEEEEEEE-TT----S-EEEEEECCBCTTCGGSEEEEEEETT-S--E-EEEEEEEES-----------SEEEEE
T ss_pred             CCCcccCCCceEEEcCC----CCEEEEecCCCccccccccceEEECCC-C--e-EEEEecCcc-----------cccceE
Confidence             11 3456788999998    6666655433        344444444 1  2 222222222           578999


Q ss_pred             EeCCCCEEE-EEcCCCeEEEEEcCcc-------eecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCce
Q psy12911        269 FHPVHGTLA-TVGSEGTFSFWDKDAR-------TKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNA  340 (356)
Q Consensus       269 ~sp~~~~l~-s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~  340 (356)
                      |+|+++.|+ +-+..+.|..+++...       +.+..+....+..-.+++..+|++.++..+.   ..+..++|. +..
T Consensus       141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~---~~I~~~~p~-G~~  216 (246)
T PF08450_consen  141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG---GRIVVFDPD-GKL  216 (246)
T ss_dssp             EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT---TEEEEEETT-SCE
T ss_pred             ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC---CEEEEECCC-ccE
Confidence            999998665 6677889999998532       1222333333457889999999987775432   334456666 444


Q ss_pred             eeeccc
Q psy12911        341 IFLRPC  346 (356)
Q Consensus       341 ~~~~~~  346 (356)
                      +..-++
T Consensus       217 ~~~i~~  222 (246)
T PF08450_consen  217 LREIEL  222 (246)
T ss_dssp             EEEEE-
T ss_pred             EEEEcC
Confidence            443333

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.44  E-value=0.00033  Score=61.83  Aligned_cols=220  Identities=10%  Similarity=0.018  Sum_probs=124.7

Q ss_pred             ccCCCeEEEEc-CCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC----CeEEEEeCCCCCceEEEeC
Q psy12911         85 IDDGTKVFMAG-CDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD----KTLKFWDLRTPQPIMTINL  159 (356)
Q Consensus        85 s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~  159 (356)
                      +|||+.+...+ ..+.+.+.|.++.+......-.+....++++  +++.++++.+.+    .++..-+......+..+..
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~s--pdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTD--YDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceEC--CCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            34554443222 2466777787776655433334455667788  888888777632    2233333322222222222


Q ss_pred             CCeeEEEecCCCeEEEEecCCeEEEEeCCC----CccccccccCcccccceEEEeecCCCCCCCeEEE-eecCCeEEEEE
Q psy12911        160 PERCYCADVDYPLAVVGTAGRGIVLYQLEG----KPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL-GSVEGRVAIQY  234 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~dg~i~i~~  234 (356)
                      .. +..+..++.+..+  .++.|.+.|.++    +......+  +.......+.++||    +.++++ +..+..+.|+|
T Consensus       279 ~~-iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI--PVGKsPHGV~vSPD----GkylyVanklS~tVSVID  349 (635)
T PRK02888        279 AR-IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV--PVPKNPHGVNTSPD----GKYFIANGKLSPTVTVID  349 (635)
T ss_pred             HH-HHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE--ECCCCccceEECCC----CCEEEEeCCCCCcEEEEE
Confidence            11 1122224444444  367899999887    22222222  34566788999999    565555 45689999999


Q ss_pred             eCCCCC------CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc----------ceecCC
Q psy12911        235 VNPANP------KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA----------RTKLKP  298 (356)
Q Consensus       235 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~----------~~~~~~  298 (356)
                      +.....      +....+.+.-..+        ..-...+|.++|....+-.-|..|..||+.+          ...+.+
T Consensus       350 v~k~k~~~~~~~~~~~~vvaevevG--------lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k  421 (635)
T PRK02888        350 VRKLDDLFDGKIKPRDAVVAEPELG--------LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQK  421 (635)
T ss_pred             ChhhhhhhhccCCccceEEEeeccC--------CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceec
Confidence            965421      1111111111110        0234678999999888889999999999876          234444


Q ss_pred             CCCCccce-----EEEEECCCCCEEEEEec
Q psy12911        299 SEAMDMSI-----STCALNHNGQIFAYAVS  323 (356)
Q Consensus       299 ~~~~~~~v-----~~~~~s~~~~~l~~~s~  323 (356)
                      +..|-.+-     ..=.-.|||++|++...
T Consensus       422 ~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        422 LDVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             ccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence            54443322     22234799999998764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.37  E-value=0.00026  Score=56.92  Aligned_cols=195  Identities=15%  Similarity=0.111  Sum_probs=118.4

Q ss_pred             EEecCCCCCceEEEEEe-----CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC-------------
Q psy12911         35 MAFSPSTLPQYFLIAGS-----WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-------------   96 (356)
Q Consensus        35 ~~~~~~~~~~~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------------   96 (356)
                      -.||+||   ++|++.-     ..|.|-|||... +...+..+..|.-.-..+.+.|||+.|+.+-.             
T Consensus        56 g~fs~dG---~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL  131 (305)
T PF07433_consen   56 GVFSPDG---RLLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL  131 (305)
T ss_pred             EEEcCCC---CEEEEeccccCCCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec
Confidence            4699999   8888873     358899999984 46666788888888889999999987777521             


Q ss_pred             -----CCeEEEEEcCCCceee---e--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEE
Q psy12911         97 -----DKTVKCWDLASNQSMQ---V--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCA  166 (356)
Q Consensus        97 -----dg~i~vwd~~~~~~~~---~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  166 (356)
                           +-++...|..+|+++.   +  .-|.-.|..+++.  .+|..++..-..|.-       ..              
T Consensus       132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~--~~G~V~~a~Q~qg~~-------~~--------------  188 (305)
T PF07433_consen  132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVD--GDGTVAFAMQYQGDP-------GD--------------  188 (305)
T ss_pred             ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEec--CCCcEEEEEecCCCC-------Cc--------------
Confidence                 2345555666666554   2  2355667777777  666544433322210       00              


Q ss_pred             ecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEE-EeecCCeEEEEEeCCCCCCCcce
Q psy12911        167 DVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYG-LGSVEGRVAIQYVNPANPKDNFT  245 (356)
Q Consensus       167 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~dg~i~i~~~~~~~~~~~~~  245 (356)
                        ..++++.-..++.+...+.....      .....+.+-+|+++++    +..++ ++-..+.+.+||.....  .+..
T Consensus       189 --~~PLva~~~~g~~~~~~~~p~~~------~~~l~~Y~gSIa~~~~----g~~ia~tsPrGg~~~~~d~~tg~--~~~~  254 (305)
T PF07433_consen  189 --APPLVALHRRGGALRLLPAPEEQ------WRRLNGYIGSIAADRD----GRLIAVTSPRGGRVAVWDAATGR--LLGS  254 (305)
T ss_pred             --cCCeEEEEcCCCcceeccCChHH------HHhhCCceEEEEEeCC----CCEEEEECCCCCEEEEEECCCCC--Eeec
Confidence              01123333333334444433221      1235677899999998    55564 44567788999887763  2322


Q ss_pred             eeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeE
Q psy12911        246 FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTF  285 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i  285 (356)
                      ....             .+..++-.+++ ++++.+. |.+
T Consensus       255 ~~l~-------------D~cGva~~~~~-f~~ssG~-G~~  279 (305)
T PF07433_consen  255 VPLP-------------DACGVAPTDDG-FLVSSGQ-GQL  279 (305)
T ss_pred             cccC-------------ceeeeeecCCc-eEEeCCC-ccE
Confidence            2222             36677777666 6665544 443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.33  E-value=0.00063  Score=58.70  Aligned_cols=190  Identities=14%  Similarity=0.064  Sum_probs=97.6

Q ss_pred             eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe----------eEEEec
Q psy12911         99 TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER----------CYCADV  168 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~~  168 (356)
                      .|.+|+..........-..+.+.++.|.  .+ ..|++-..||.+++||+. |+.  .+.....          +.....
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt--~~-e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~  135 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWT--DD-EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWF  135 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEEC--CC-CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCccccccccccc
Confidence            4888886654443322222899999997  54 556677789999999986 333  2221111          112222


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCccccccccCccc--------ccceE-EEeecCCCCCCCeEEEeecCCeEEEEEeCCCC
Q psy12911        169 DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLK--------YQNRC-IAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN  239 (356)
Q Consensus       169 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~i~~-~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~  239 (356)
                      .+.-+++-..++.+.+..-.......+.......        ..... ..+..+    ....+....++.+.+.+-... 
T Consensus       136 ~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~----~~~~i~~~~g~~i~~i~~~~~-  210 (410)
T PF04841_consen  136 YKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD----RVVEILLANGETIYIIDENSF-  210 (410)
T ss_pred             CCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecC----cceEEEEecCCEEEEEEcccc-
Confidence            3244555556666555533332211111110000        00000 112222    233333344444443322111 


Q ss_pred             CCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC-ccceEEEEECCCC
Q psy12911        240 PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM-DMSISTCALNHNG  315 (356)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~  315 (356)
                       .   .+.. .+           ++..|+.||+|++||.-..+|.+.|....-.+.+..+... ......+.|.-+.
T Consensus       211 -~---~i~~-~~-----------~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  211 -K---QIDS-DG-----------PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             -c---cccC-CC-----------CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence             0   0111 11           7999999999999999999999999886655555444432 2344555555443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.32  E-value=0.00039  Score=58.27  Aligned_cols=174  Identities=13%  Similarity=0.144  Sum_probs=108.9

Q ss_pred             CeEEEEeccCCCceeeeeeccCCcceeEEE---EccC----CCeEEEEcC----------CCeEEEEEcCCC-----cee
Q psy12911         54 NNVRCWEVEPNGKTIPKSMQGMSEPVLDVA---WIDD----GTKVFMAGC----------DKTVKCWDLASN-----QSM  111 (356)
Q Consensus        54 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~---~s~~----~~~l~~~~~----------dg~i~vwd~~~~-----~~~  111 (356)
                      ..|++.|..+....-...+. ....+.+++   +..+    ..+|+.|..          .|.|.++++...     ++.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~-~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELE-PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEE-TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             cEEEEEeCCCCeEEEEEECC-CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            35777777663322222333 233444443   3322    356776643          289999999884     222


Q ss_pred             --eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC-ceEE--EeCCCeeEEEecCCCeEEEEecCCeEEEEe
Q psy12911        112 --QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ-PIMT--INLPERCYCADVDYPLAVVGTAGRGIVLYQ  186 (356)
Q Consensus       112 --~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  186 (356)
                        ......++|++++-.   ++ .|+.+. .+.|.+|++...+ ....  +..+..+.++...++++++|.....+.++.
T Consensus        81 ~i~~~~~~g~V~ai~~~---~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen   81 LIHSTEVKGPVTAICSF---NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLR  155 (321)
T ss_dssp             EEEEEEESS-EEEEEEE---TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             EEEEEeecCcceEhhhh---CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEE
Confidence              245578899999864   33 344444 5889999998887 4333  334456788888889999999999999886


Q ss_pred             CCCCccccccc-cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        187 LEGKPQEFKKT-ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       187 ~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                      .+......... .......++++.+.++    +..++.+..+|.+.++..+.
T Consensus       156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d----~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  156 YDEENNKLILVARDYQPRWVTAAEFLVD----EDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EETTTE-EEEEEEESS-BEEEEEEEE-S----SSEEEEEETTSEEEEEEE-S
T ss_pred             EEccCCEEEEEEecCCCccEEEEEEecC----CcEEEEEcCCCeEEEEEECC
Confidence            65432212222 2233456788888877    45899999999999999864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649|consensus

Probab=98.29  E-value=0.0007  Score=52.31  Aligned_cols=105  Identities=16%  Similarity=0.102  Sum_probs=83.5

Q ss_pred             CCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eE
Q psy12911         88 GTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CY  164 (356)
Q Consensus        88 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~  164 (356)
                      ..+++.|+..+.+.--|..+|+......-..++.+-+.-   -|++++.|+..|.+++.+..+|.....+...+.   ..
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            457888899999999999999987755555555554442   356799999999999999999988887775553   34


Q ss_pred             EEecCCCeEEEEecCCeEEEEeCCCCccccc
Q psy12911        165 CADVDYPLAVVGTAGRGIVLYQLEGKPQEFK  195 (356)
Q Consensus       165 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  195 (356)
                      .+++++..+..++.|++.+..|.++.....+
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEe
Confidence            5788889999999999999999988765444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.26  E-value=0.00047  Score=59.62  Aligned_cols=229  Identities=12%  Similarity=0.108  Sum_probs=116.6

Q ss_pred             eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911         22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK  101 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  101 (356)
                      .+.+....-....+.++|+|   +++++ +.||...|+....  ..- .    ..+.-...+|.+.+ .+|+-...++|.
T Consensus        25 ~k~lg~~~~~p~~ls~npng---r~v~V-~g~geY~iyt~~~--~r~-k----~~G~g~~~vw~~~n-~yAv~~~~~~I~   92 (443)
T PF04053_consen   25 VKELGSCEIYPQSLSHNPNG---RFVLV-CGDGEYEIYTALA--WRN-K----AFGSGLSFVWSSRN-RYAVLESSSTIK   92 (443)
T ss_dssp             -EEEEE-SS--SEEEE-TTS---SEEEE-EETTEEEEEETTT--TEE-E----EEEE-SEEEE-TSS-EEEEE-TTS-EE
T ss_pred             eccCCCCCcCCeeEEECCCC---CEEEE-EcCCEEEEEEccC--Ccc-c----ccCceeEEEEecCc-cEEEEECCCeEE
Confidence            33444455568899999999   88888 4588888888433  111 1    23556678899855 466666688899


Q ss_pred             EEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCCCeEEEEecCC
Q psy12911        102 CWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYPLAVVGTAGR  180 (356)
Q Consensus       102 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~  180 (356)
                      ++.--..+..........+..+-    . |.+|+..+.+ .|.+||+.+++.++.+.... ..+.++.++..++..+.+ 
T Consensus        93 I~kn~~~~~~k~i~~~~~~~~If----~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-  165 (443)
T PF04053_consen   93 IYKNFKNEVVKSIKLPFSVEKIF----G-GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-  165 (443)
T ss_dssp             EEETTEE-TT-----SS-EEEEE------SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--
T ss_pred             EEEcCccccceEEcCCcccceEE----c-CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-
Confidence            96332222222222222344442    3 7777777654 89999999999999999886 677777777777777654 


Q ss_pred             eEEEEeCCCC---------ccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911        181 GIVLYQLEGK---------PQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS  251 (356)
Q Consensus       181 ~i~i~d~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  251 (356)
                      .+.+++....         -.............|.+..|..+      .++-.+.. .++-  +-.+.   ..++..-..
T Consensus       166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d------~fiYtT~~-~lkY--l~~Ge---~~~i~~ld~  233 (443)
T PF04053_consen  166 SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED------CFIYTTSN-HLKY--LVNGE---TGIIAHLDK  233 (443)
T ss_dssp             SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT------EEEEE-TT-EEEE--EETTE---EEEEEE-SS
T ss_pred             eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC------EEEEEcCC-eEEE--EEcCC---cceEEEcCC
Confidence            6666665432         00011111122445666666644      33333333 4444  22221   112222222


Q ss_pred             CCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                                 ++.=+.+.|..+.+.....|+.|..+.+..
T Consensus       234 -----------~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  234 -----------PLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             -------------EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             -----------ceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence                       566777788777888888888888887763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.19  E-value=0.0018  Score=51.29  Aligned_cols=208  Identities=9%  Similarity=0.066  Sum_probs=105.8

Q ss_pred             eeeccCCcceeEEEEccCCCe-EEEEcCCCeEEEEEcCCCceeee--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEE
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTK-VFMAGCDKTVKCWDLASNQSMQV--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW  146 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw  146 (356)
                      +.+.+-...+..++|+|+.+. +++....+.|...+.. |+.++.  ....+..-.|++.  .++.++++.-.++.+.++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~--g~~~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYL--GNGRYVLSEERDQRLYIF   91 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE---STTEEEEEETTTTEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEE--CCCEEEEEEcCCCcEEEE
Confidence            345556667999999997664 4555567888888874 666552  2234567888987  777777666568899999


Q ss_pred             eCCCCC-ceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee
Q psy12911        147 DLRTPQ-PIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS  225 (356)
Q Consensus       147 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  225 (356)
                      ++.... .+..-.                       +.-+++.        .....+.....++|.+.    ...++++-
T Consensus        92 ~~~~~~~~~~~~~-----------------------~~~~~l~--------~~~~~N~G~EGla~D~~----~~~L~v~k  136 (248)
T PF06977_consen   92 TIDDDTTSLDRAD-----------------------VQKISLG--------FPNKGNKGFEGLAYDPK----TNRLFVAK  136 (248)
T ss_dssp             EE----TT--EEE-----------------------EEEEE-----------S---SS--EEEEEETT----TTEEEEEE
T ss_pred             EEeccccccchhh-----------------------ceEEecc--------cccCCCcceEEEEEcCC----CCEEEEEe
Confidence            885432 111100                       0001110        00123345678888887    56676777


Q ss_pred             cCCeEEEEEeCCCCC-CCccee--eeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcceecCCC--
Q psy12911        226 VEGRVAIQYVNPANP-KDNFTF--KCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDARTKLKPS--  299 (356)
Q Consensus       226 ~dg~i~i~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~--  299 (356)
                      ...-..+|.++.... ..+...  ..+..     .......+.+++++|.. .+++.......|..+| .+|+.+..+  
T Consensus       137 E~~P~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L  210 (248)
T PF06977_consen  137 ERKPKRLYEVNGFPGGFDLFVSDDQDLDD-----DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSL  210 (248)
T ss_dssp             ESSSEEEEEEESTT-SS--EEEE-HHHH------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-
T ss_pred             CCCChhhEEEccccCccceeecccccccc-----ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEe
Confidence            766677777654110 111110  01110     00001147889999964 6777788888999999 446654432  


Q ss_pred             CC-Cc------cceEEEEECCCCCEEEEE
Q psy12911        300 EA-MD------MSISTCALNHNGQIFAYA  321 (356)
Q Consensus       300 ~~-~~------~~v~~~~~s~~~~~l~~~  321 (356)
                      .. ..      ...-.|+|.++|++.+++
T Consensus       211 ~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  211 DRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             CCcccCcccccCCccEEEECCCCCEEEEc
Confidence            21 11      135689999999877765

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.17  E-value=0.00049  Score=57.64  Aligned_cols=177  Identities=11%  Similarity=0.106  Sum_probs=109.6

Q ss_pred             CeEEEEEcCCCceee--ecccCCCeeEEEEEeCCC-----CCeEEEEEC----------CCeEEEEeCCCC-------Cc
Q psy12911         98 KTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPN-----YTCLMTGSW----------DKTLKFWDLRTP-------QP  153 (356)
Q Consensus        98 g~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~-----~~~l~~~~~----------dg~i~iwd~~~~-------~~  153 (356)
                      ..|++.|..+.+.+.  .....+.+.+++...-.+     ..+|+.|+.          .|.|.++++...       +.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            357888887776654  222344455554432122     467777653          288999999884       23


Q ss_pred             eEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEE
Q psy12911        154 IMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQ  233 (356)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~  233 (356)
                      +........+.++...+.. ++++.++.|.+|++.................+.++...      +.++++|.....+.++
T Consensus        82 i~~~~~~g~V~ai~~~~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~------~~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSFNGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF------KNYILVGDAMKSVSLL  154 (321)
T ss_dssp             EEEEEESS-EEEEEEETTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE------TTEEEEEESSSSEEEE
T ss_pred             EEEEeecCcceEhhhhCCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc------ccEEEEEEcccCEEEE
Confidence            3445566778888877777 44455699999999887611222111223345555555      3489999999999998


Q ss_pred             EeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        234 YVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      .++... ..+..+.....         ...++++.|-++++.++.+..+|.|.++...
T Consensus       155 ~~~~~~-~~l~~va~d~~---------~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  155 RYDEEN-NKLILVARDYQ---------PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEETTT-E-EEEEEEESS----------BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEccC-CEEEEEEecCC---------CccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            776532 11222222111         1168889998777899999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.17  E-value=0.00047  Score=46.20  Aligned_cols=104  Identities=14%  Similarity=0.190  Sum_probs=68.4

Q ss_pred             eeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce
Q psy12911         32 ISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS  110 (356)
Q Consensus        32 V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  110 (356)
                      |++|++.. ++...+.|++|+.|..|++|+-+.    ++..+. -.+.|++++-... ..++.+..+|+|-+|+-... .
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R-l   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR-L   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcce-e
Confidence            56666654 221247899999999999998654    334454 3567888877765 57888899999999986322 2


Q ss_pred             eeecccCCCeeEEEEEeCCCC---CeEEEEECCCeEE
Q psy12911        111 MQVAQHDAPVKTCHWIKAPNY---TCLMTGSWDKTLK  144 (356)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~---~~l~~~~~dg~i~  144 (356)
                      -+. .....+.++.+.. .++   .-|++|-.+|.|-
T Consensus        75 WRi-KSK~~~~~~~~~D-~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRI-KSKNQVTSMAFYD-INGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eee-ccCCCeEEEEEEc-CCCCCceEEEEEecCCeEE
Confidence            222 2334467776652 222   2588888888764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.15  E-value=0.00092  Score=57.84  Aligned_cols=215  Identities=10%  Similarity=-0.007  Sum_probs=105.8

Q ss_pred             eccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC
Q psy12911         72 MQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP  151 (356)
Q Consensus        72 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  151 (356)
                      +.........+.++|+|++++.++ ||.-.|+.....+.    ...+.-....|.  ++ ..+++-...+.|.|+.--+.
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~----k~~G~g~~~vw~--~~-n~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRN----KAFGSGLSFVWS--SR-NRYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE----EEEEE-SEEEE---TS-SEEEEE-TTS-EEEEETTEE
T ss_pred             CCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcc----cccCceeEEEEe--cC-ccEEEEECCCeEEEEEcCcc
Confidence            334455688999999999888854 78888887333222    123455678898  74 45777777889999743344


Q ss_pred             CceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEE
Q psy12911        152 QPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVA  231 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~  231 (356)
                      +....++.+..+-.+-. |..|++.+. +.|.+||..++....+...    ..+..+.|+++    +.+++..+.+ .+.
T Consensus       100 ~~~k~i~~~~~~~~If~-G~LL~~~~~-~~i~~yDw~~~~~i~~i~v----~~vk~V~Ws~~----g~~val~t~~-~i~  168 (443)
T PF04053_consen  100 EVVKSIKLPFSVEKIFG-GNLLGVKSS-DFICFYDWETGKLIRRIDV----SAVKYVIWSDD----GELVALVTKD-SIY  168 (443)
T ss_dssp             -TT-----SS-EEEEE--SSSEEEEET-TEEEEE-TTT--EEEEESS-----E-EEEEE-TT----SSEEEEE-S--SEE
T ss_pred             ccceEEcCCcccceEEc-CcEEEEECC-CCEEEEEhhHcceeeEEec----CCCcEEEEECC----CCEEEEEeCC-eEE
Confidence            55455665543333333 555555544 4899999998754332221    23789999999    7788877655 677


Q ss_pred             EEEeCCC-------CC-C-CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC
Q psy12911        232 IQYVNPA-------NP-K-DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM  302 (356)
Q Consensus       232 i~~~~~~-------~~-~-~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  302 (356)
                      +++.+..       .+ . ....+..-..           .|.+.+|..+ -++.+.. . .|+.+--.....+..+   
T Consensus       169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~-----------~IkSg~W~~d-~fiYtT~-~-~lkYl~~Ge~~~i~~l---  231 (443)
T PF04053_consen  169 ILKYNLEAVAAIPEEGVEDAFELIHEISE-----------RIKSGCWVED-CFIYTTS-N-HLKYLVNGETGIIAHL---  231 (443)
T ss_dssp             EEEE-HHHHHHBTTTB-GGGEEEEEEE-S-------------SEEEEETT-EEEEE-T-T-EEEEEETTEEEEEEE----
T ss_pred             EEEecchhcccccccCchhceEEEEEecc-----------eeEEEEEEcC-EEEEEcC-C-eEEEEEcCCcceEEEc---
Confidence            7776543       00 0 1111211122           6888889765 4444443 3 6665322111223333   


Q ss_pred             ccceEEEEECCCCCEEEEEe
Q psy12911        303 DMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       303 ~~~v~~~~~s~~~~~l~~~s  322 (356)
                      ..++.=+.+.+..+.|....
T Consensus       232 d~~~yllgy~~~~~~ly~~D  251 (443)
T PF04053_consen  232 DKPLYLLGYLPKENRLYLID  251 (443)
T ss_dssp             SS--EEEEEETTTTEEEEE-
T ss_pred             CCceEEEEEEccCCEEEEEE
Confidence            23455555556555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1897|consensus

Probab=98.14  E-value=0.0065  Score=55.95  Aligned_cols=122  Identities=7%  Similarity=-0.006  Sum_probs=77.6

Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCc
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGV  258 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (356)
                      .|.|.+|.+..............++.+.++.....       .+.++-+..|++|++..+  +.++.-..+..       
T Consensus       806 ~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fng-------kllA~In~~vrLye~t~~--~eLr~e~~~~~-------  869 (1096)
T KOG1897|consen  806 NGRIIVFEFEELNSLELVAETVVKGAVYALVEFNG-------KLLAGINQSVRLYEWTTE--RELRIECNISN-------  869 (1096)
T ss_pred             cceEEEEEEecCCceeeeeeeeeccceeehhhhCC-------eEEEecCcEEEEEEcccc--ceehhhhcccC-------
Confidence            47888888877332222223334455555554433       445566778999999765  34444444444       


Q ss_pred             ccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC--cceecCCC-CCCccceEEEEECCCCCEEEE
Q psy12911        259 QDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD--ARTKLKPS-EAMDMSISTCALNHNGQIFAY  320 (356)
Q Consensus       259 ~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~--~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~  320 (356)
                          ++..+...-.|..++.|..=+.+.+...+  .|.....- ..+..+++++.+-.+..++.+
T Consensus       870 ----~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylga  930 (1096)
T KOG1897|consen  870 ----PIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGA  930 (1096)
T ss_pred             ----CeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEee
Confidence                78888888899999999888877776544  33333222 345678888888776666544

>KOG4649|consensus

Probab=98.12  E-value=0.0022  Score=49.67  Aligned_cols=140  Identities=10%  Similarity=-0.007  Sum_probs=94.6

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeE-E
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKT-C  123 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~-~  123 (356)
                      .+++.|+..+.+.--|..++. .....+-  ...|.+-+.- -|++++.|...|.+++.+.++|+......-.+.|.+ .
T Consensus        24 T~v~igSHs~~~~avd~~sG~-~~We~il--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGN-LIWEAIL--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             eEEEEecCCceEEEecCCCCc-EEeehhh--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            688888888888888888743 2222222  2233332222 367899999999999999999976653333333332 2


Q ss_pred             EEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeE---EEecCCCeEEEEecCCeEEEEeCCCC
Q psy12911        124 HWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCY---CADVDYPLAVVGTAGRGIVLYQLEGK  190 (356)
Q Consensus       124 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~i~i~d~~~~  190 (356)
                      ...  +++.++..++.|++.+..|.++..++...+.+....   ++++....++++...|.+.--..+..
T Consensus       100 ~~d--~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  100 QCD--FDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             EEc--CCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            233  889999999999999999999999998887666543   34444445666666666655554443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.12  E-value=0.00067  Score=45.48  Aligned_cols=106  Identities=13%  Similarity=0.081  Sum_probs=73.7

Q ss_pred             eeEEEEEeC-C-CCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCC-CeEEEEecCCeEEEEeCCCCcccccc
Q psy12911        120 VKTCHWIKA-P-NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDY-PLAVVGTAGRGIVLYQLEGKPQEFKK  196 (356)
Q Consensus       120 v~~~~~~~~-~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~  196 (356)
                      |+++++..- . ..+.|++|++|..||+|+  ..+.+..+.....+..+.... ..++.+..+|+|-+|+-....   ..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl---WR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL---WR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCccee---ee
Confidence            566776631 1 225799999999999996  557888888888877766544 689999999999999864431   11


Q ss_pred             ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911        197 TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI  232 (356)
Q Consensus       197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i  232 (356)
                      .  ..+..+.++.+..-.......|++|-.+|.|-+
T Consensus        77 i--KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   77 I--KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             e--ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            2  234456777766553222456889988888753

>KOG1008|consensus

Probab=98.12  E-value=1.3e-06  Score=75.06  Aligned_cols=201  Identities=15%  Similarity=0.182  Sum_probs=125.2

Q ss_pred             CcceeEEEEccCC--CeEEEEcCCCeEEEEEcCCCce---eeecccCCCeeEEEEEeCCCCCeEEEEE----CCCeEEEE
Q psy12911         76 SEPVLDVAWIDDG--TKVFMAGCDKTVKCWDLASNQS---MQVAQHDAPVKTCHWIKAPNYTCLMTGS----WDKTLKFW  146 (356)
Q Consensus        76 ~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~----~dg~i~iw  146 (356)
                      ...+.|++++-+.  ..++.|..+|.|.+-.++...-   ....++..+.++++|++ -|.+.|+.|-    .|..+.||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwne-LDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNE-LDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccc-ccHHHHHhhhhhhcccCCccce
Confidence            3456777776543  3678888899999988765432   23567889999999995 4566677663    35679999


Q ss_pred             eCCCC--CceEEE--e----CCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCC
Q psy12911        147 DLRTP--QPIMTI--N----LPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQP  218 (356)
Q Consensus       147 d~~~~--~~~~~~--~----~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  218 (356)
                      |+.++  .+....  .    .....+|..-+...+++|.....++++|++........+.   ...+..+.+.|-.   +
T Consensus       135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~---~  208 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFS---P  208 (783)
T ss_pred             ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCC---C
Confidence            99876  222111  1    1223556665667888999999999999996433222222   2245566666631   4


Q ss_pred             CeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEc-CCCeEEEEEcC
Q psy12911        219 AGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVG-SEGTFSFWDKD  291 (356)
Q Consensus       219 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~-~dg~i~iwd~~  291 (356)
                      .+++. ..||.|.+||....-..++..+.......       ...+..++|+|.. ..+++.. ..++|+.+|+.
T Consensus       209 nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~-------~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  209 NYFCS-NSDGDIAIWDTYRNIENPLQIILRNENKK-------PKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             Cceec-cccCceeeccchhhhccHHHHHhhCCCCc-------ccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            45544 45999999994222112333322222100       0148899999964 3455544 45789999975

>KOG4640|consensus

Probab=98.12  E-value=1.9e-05  Score=67.92  Aligned_cols=92  Identities=12%  Similarity=0.156  Sum_probs=77.2

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCccee-EEEEccCCCeEEEEcCCCeEEEEEcCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVL-DVAWIDDGTKVFMAGCDKTVKCWDLAS  107 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vwd~~~  107 (356)
                      .-.|.-+.|+|.-   .++|.+..+|.|.+..+..   ..+.++.-|...++ +++|.|||+.||.|-.||+|++-|+++
T Consensus        20 ~~~i~~~ewnP~~---dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   20 PINIKRIEWNPKM---DLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             ccceEEEEEcCcc---chhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence            4578899999998   9999999999999999874   33456666777777 999999999999999999999999999


Q ss_pred             Cceeee--cccCCCeeEEEEE
Q psy12911        108 NQSMQV--AQHDAPVKTCHWI  126 (356)
Q Consensus       108 ~~~~~~--~~~~~~v~~~~~~  126 (356)
                      +..+.-  ......|.++.|.
T Consensus        94 ~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   94 GGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             CCceeccccccccchheeecc
Confidence            887763  4556677888774

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.10  E-value=0.0019  Score=54.83  Aligned_cols=228  Identities=15%  Similarity=0.160  Sum_probs=121.0

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccC----------------CcceeEEEEccCCCeEE
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM----------------SEPVLDVAWIDDGTKVF   92 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~   92 (356)
                      ...+....|||+|   +.+|... ++.|.+++..++ .....+..+-                -+.-..+-||||+++||
T Consensus        42 ~~~~~~~~~sP~g---~~~~~v~-~~nly~~~~~~~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la  116 (353)
T PF00930_consen   42 PPKLQDAKWSPDG---KYIAFVR-DNNLYLRDLATG-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA  116 (353)
T ss_dssp             ETTBSEEEE-SSS---TEEEEEE-TTEEEEESSTTS-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE
T ss_pred             ccccccceeecCC---CeeEEEe-cCceEEEECCCC-CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEE
Confidence            6788999999999   8888876 679999998763 2221222220                11235688999999988


Q ss_pred             EEcCC-C-----------------------------------eEEEEEcCCCceeee------cccCCCeeEEEEEeCCC
Q psy12911         93 MAGCD-K-----------------------------------TVKCWDLASNQSMQV------AQHDAPVKTCHWIKAPN  130 (356)
Q Consensus        93 ~~~~d-g-----------------------------------~i~vwd~~~~~~~~~------~~~~~~v~~~~~~~~~~  130 (356)
                      ....| .                                   .+.|+|+.+++...+      ......+..+.|.  ++
T Consensus       117 ~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~--~d  194 (353)
T PF00930_consen  117 FLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWS--PD  194 (353)
T ss_dssp             EEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEE--ET
T ss_pred             EEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceec--CC
Confidence            75332 1                                   244556666554321      1234567889998  77


Q ss_pred             CCeEEEE--ECC---CeEEEEeCCCCCceEEEeCCC-------eeEEEe-cCCC-eEEEEecCCe--EEEEeCCCCcccc
Q psy12911        131 YTCLMTG--SWD---KTLKFWDLRTPQPIMTINLPE-------RCYCAD-VDYP-LAVVGTAGRG--IVLYQLEGKPQEF  194 (356)
Q Consensus       131 ~~~l~~~--~~d---g~i~iwd~~~~~~~~~~~~~~-------~~~~~~-~~~~-~~~~~~~d~~--i~i~d~~~~~~~~  194 (356)
                      +..|+..  ..+   ..+.+.|..+++....+....       ....+. ..+. ++.....+|.  |.+++..++.  .
T Consensus       195 ~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~--~  272 (353)
T PF00930_consen  195 GKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK--P  272 (353)
T ss_dssp             TEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE--E
T ss_pred             CcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc--e
Confidence            7734333  222   247778888776544333211       122222 3343 5555556665  4445555543  2


Q ss_pred             ccccCcccccceE-EEeecCCCCCCCeEEEeecC--CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeC
Q psy12911        195 KKTESPLKYQNRC-IAIFRDKKKQPAGYGLGSVE--GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP  271 (356)
Q Consensus       195 ~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~d--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp  271 (356)
                      +.+. .....|.. +.+.++.   ...+.++..+  ..-.+|.++.........+.+...           .-..+.|||
T Consensus       273 ~~lT-~G~~~V~~i~~~d~~~---~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-----------~~~~~~~Sp  337 (353)
T PF00930_consen  273 RQLT-SGDWEVTSILGWDEDN---NRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-----------DHYSASFSP  337 (353)
T ss_dssp             EESS--SSS-EEEEEEEECTS---SEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-----------TTEEEEE-T
T ss_pred             eccc-cCceeecccceEcCCC---CEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-----------CceEEEECC
Confidence            2222 23345543 5566662   3344455542  344555444331122333333322           125899999


Q ss_pred             CCCEEEEEc
Q psy12911        272 VHGTLATVG  280 (356)
Q Consensus       272 ~~~~l~s~~  280 (356)
                      +|++++-.+
T Consensus       338 dg~y~v~~~  346 (353)
T PF00930_consen  338 DGKYYVDTY  346 (353)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEE
Confidence            999887543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4441|consensus

Probab=98.04  E-value=0.002  Score=58.03  Aligned_cols=225  Identities=18%  Similarity=0.193  Sum_probs=126.7

Q ss_pred             eEEEEEeCCC------eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC------CeEEEEEcCCCceee
Q psy12911         45 YFLIAGSWDN------NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD------KTVKCWDLASNQSMQ  112 (356)
Q Consensus        45 ~~l~~~~~dg------~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~  112 (356)
                      .+++.|+.++      .+..||..++.......+. ....-.+++.. ++...++|+.|      .++..||..+++...
T Consensus       286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             eEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            7788888773      6888888875444434443 22333444444 45677888888      367888988887654


Q ss_pred             ecccCCC--eeEEEEEeCCCCCeEEEEECCCe-----EEEEeCCCCCce--EEEeCCC-eeEEEecCCCeEEEEecC---
Q psy12911        113 VAQHDAP--VKTCHWIKAPNYTCLMTGSWDKT-----LKFWDLRTPQPI--MTINLPE-RCYCADVDYPLAVVGTAG---  179 (356)
Q Consensus       113 ~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~d---  179 (356)
                      ...-...  -.+++.   -+|.+.++|+.||.     |..||..+.+.-  ....... ..-.....+...++|+.+   
T Consensus       364 ~a~M~~~R~~~~v~~---l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAV---LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             cCCccCccccceeEE---ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence            3221111  112222   56788999998864     778888776432  2222222 233344555566666643   


Q ss_pred             ---CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCe-----EEEEEeCCCCCCCcceeeeecC
Q psy12911        180 ---RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGR-----VAIQYVNPANPKDNFTFKCHRS  251 (356)
Q Consensus       180 ---~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~-----i~i~~~~~~~~~~~~~~~~~~~  251 (356)
                         .++..||..++.-............ ..++...     +.++++|+.++.     +..||........+..+...+.
T Consensus       441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~~~-----~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs  514 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAVLN-----GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS  514 (571)
T ss_pred             cccceEEEEcCCCCceeecCCccccccc-ceEEEEC-----CEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence               4678888887642221111111111 1233332     468888887763     6667776665444433333332


Q ss_pred             CCCCCCcccccceEEEEEeCCCCEEEEEcCCC-----eEEEEEcCcc
Q psy12911        252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG-----TFSFWDKDAR  293 (356)
Q Consensus       252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg-----~i~iwd~~~~  293 (356)
                                 .+....+  ++...+.|+.||     +|..||..+.
T Consensus       515 -----------~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  515 -----------AVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             -----------cccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence                       2222333  567788888776     5777776654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.01  E-value=0.0047  Score=50.55  Aligned_cols=236  Identities=13%  Similarity=0.126  Sum_probs=127.5

Q ss_pred             cCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceE----------
Q psy12911         86 DDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIM----------  155 (356)
Q Consensus        86 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------  155 (356)
                      ..++.|+.|..+| +.++++..........+...|..+...  ++-+.+++-+ |+.++++++..-....          
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl--~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVL--PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEe--cccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3577899998888 899998333222222334449999998  7666666655 5999999987654333          


Q ss_pred             -----EEeCCCeeEEEe----cCCCeEEEEecCCeEEEEeCCCCcccc--ccccCcccccceEEEeecCCCCCCCeEEEe
Q psy12911        156 -----TINLPERCYCAD----VDYPLAVVGTAGRGIVLYQLEGKPQEF--KKTESPLKYQNRCIAIFRDKKKQPAGYGLG  224 (356)
Q Consensus       156 -----~~~~~~~~~~~~----~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  224 (356)
                           .+.....+..+.    ..+...++......|.+|.........  ..........+..++|..+      .++.|
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~------~i~v~  154 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGN------KICVG  154 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCC------EEEEE
Confidence                 222222333333    223344555555699999887742221  2222334578889999855      67776


Q ss_pred             ecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC--CCCCC
Q psy12911        225 SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK--PSEAM  302 (356)
Q Consensus       225 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~  302 (356)
                      ..++ ..+.|++......+........ ..........++..+... ++.+|++-  |..-.+.|. .|+..+  .++- 
T Consensus       155 ~~~~-f~~idl~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W-  227 (275)
T PF00780_consen  155 TSKG-FYLIDLNTGSPSELLDPSDSSS-SFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW-  227 (275)
T ss_pred             eCCc-eEEEecCCCCceEEeCccCCcc-hhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEc-
Confidence            6554 6778887554333322211110 000000111144444443 45666653  333334444 455443  1211 


Q ss_pred             ccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCceeeec
Q psy12911        303 DMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLR  344 (356)
Q Consensus       303 ~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~~~~  344 (356)
                      ...+.++++  ...||+.-+.    ...++++...++.+..-
T Consensus       228 ~~~p~~~~~--~~pyli~~~~----~~iEV~~~~~~~lvQ~i  263 (275)
T PF00780_consen  228 SSAPQSVAY--SSPYLIAFSS----NSIEVRSLETGELVQTI  263 (275)
T ss_pred             CCchhEEEE--ECCEEEEECC----CEEEEEECcCCcEEEEE
Confidence            234455555  3457776653    44677777666554433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=98.01  E-value=0.0021  Score=58.02  Aligned_cols=224  Identities=8%  Similarity=-0.002  Sum_probs=112.9

Q ss_pred             eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC------CeEEEEEcCCCceeeeccc--CCCeeEEEEE
Q psy12911         55 NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD------KTVKCWDLASNQSMQVAQH--DAPVKTCHWI  126 (356)
Q Consensus        55 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~--~~~v~~~~~~  126 (356)
                      .+..||..++.......+...... .+++. -++...+.||.+      ..+..||..+........-  ...-.+++. 
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-
Confidence            567788777443332233211111 12222 256667777753      3577889887765432211  111112222 


Q ss_pred             eCCCCCeEEEEECCC-----eEEEEeCCCCCceE--EEeCCCe-eEEEecCCCeEEEEecC-------------------
Q psy12911        127 KAPNYTCLMTGSWDK-----TLKFWDLRTPQPIM--TINLPER-CYCADVDYPLAVVGTAG-------------------  179 (356)
Q Consensus       127 ~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~d-------------------  179 (356)
                        -++.+.+.||.++     .+..||..+.+-..  .+..+.. .......+...++|+.+                   
T Consensus       350 --~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        350 --IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             --ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence              4677888888764     48889988764322  1111111 11223344555556543                   


Q ss_pred             ----CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC------eEEEEEeCC-CCCCCcceeee
Q psy12911        180 ----RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG------RVAIQYVNP-ANPKDNFTFKC  248 (356)
Q Consensus       180 ----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg------~i~i~~~~~-~~~~~~~~~~~  248 (356)
                          ..+..||..++.-...... .....-.+++.. +    +..+++|+.++      .+..||.+. .....+..++.
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m-~~~r~~~~~~~~-~----~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~  501 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNF-WTGTIRPGVVSH-K----DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES  501 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCC-CcccccCcEEEE-C----CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc
Confidence                3477788877532111110 011111122222 2    45677776542      356677765 44444444443


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC--eEEEEEcCcceecCCCCCC
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG--TFSFWDKDARTKLKPSEAM  302 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~  302 (356)
                      ...           ....+++  +|++.+.|+.||  .+..||..+.+-...-..|
T Consensus       502 ~r~-----------~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~  544 (557)
T PHA02713        502 RLS-----------ALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH  544 (557)
T ss_pred             ccc-----------cceeEEE--CCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence            332           2333333  678899999888  7778887766544333334

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.99  E-value=0.0018  Score=55.94  Aligned_cols=158  Identities=15%  Similarity=0.112  Sum_probs=98.7

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEE---eCC-CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC-CC-
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAG---SWD-NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DK-   98 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~---~~d-g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg-   98 (356)
                      +..-...+..-+|+|++   ..++..   ... ..+.+++++++....+..+.+   .-..-+|+|||+.|+.+.. || 
T Consensus       188 l~~~~~~~~~p~ws~~~---~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g---~~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         188 LTDSGSLILTPAWSPDG---KKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG---NNGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             ecccCcceeccccCcCC---CceEEEEEecCCCceEEEEeccCCccceeeccCC---ccCCccCCCCCCEEEEEECCCCC
Confidence            33445577778899998   554443   222 469999999865555444444   3446689999998776554 55 


Q ss_pred             -eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC-C--eEEEEeCCCCCceEEEe--CCC-eeEEEecCCC
Q psy12911         99 -TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD-K--TLKFWDLRTPQPIMTIN--LPE-RCYCADVDYP  171 (356)
Q Consensus        99 -~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~--~~~-~~~~~~~~~~  171 (356)
                       .|.+.|+.+++..++....+.-..=.|+  |||+.++..+.. |  .|.+.|.+.... ..+.  ... ..-.++++++
T Consensus       262 ~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~s--pdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~  338 (425)
T COG0823         262 PDIYLMDLDGKNLPRLTNGFGINTSPSWS--PDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGD  338 (425)
T ss_pred             ccEEEEcCCCCcceecccCCccccCccCC--CCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCC
Confidence             4666788877755544434444456677  999988877643 3  377777666554 3333  222 2456677788


Q ss_pred             eEEEEec-CCe--EEEEeCCCCc
Q psy12911        172 LAVVGTA-GRG--IVLYQLEGKP  191 (356)
Q Consensus       172 ~~~~~~~-d~~--i~i~d~~~~~  191 (356)
                      .++..+. +|.  |.+.|+.++.
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             EEEEEeccCCceeeEEeccCCCC
Confidence            7776654 344  6666665553

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.98  E-value=0.00026  Score=60.27  Aligned_cols=230  Identities=10%  Similarity=0.089  Sum_probs=109.3

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeecc------CCcceeEEEEcc-----
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQG------MSEPVLDVAWID-----   86 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~s~-----   86 (356)
                      .+.+...++...++|++++.|.-|    ++|.|..+|.+.|.|++...-.....+..      ....|+++.|+-     
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iG----Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~  150 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIG----FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG  150 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTS----EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred             ccCchhheeccCCcEeEEecCCCc----EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence            366777788889999999999776    99999999999999997632222122222      344688888863     


Q ss_pred             CC---CeEEEEcCCCeEEEEEcCC--Cc-ee-ee----cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceE
Q psy12911         87 DG---TKVFMAGCDKTVKCWDLAS--NQ-SM-QV----AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIM  155 (356)
Q Consensus        87 ~~---~~l~~~~~dg~i~vwd~~~--~~-~~-~~----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  155 (356)
                      |+   -.+++|...|.+.+|.+.-  +. .. .+    ..+.++|..                    |...|..+++...
T Consensus       151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~--------------------I~~i~~~~G~~a~  210 (395)
T PF08596_consen  151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILS--------------------IIPINADTGESAL  210 (395)
T ss_dssp             SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----E--------------------EEEEETTT--B-B
T ss_pred             CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEE--------------------EEEEECCCCCccc
Confidence            22   3677888889999987742  11 00 00    012222222                    2233333333211


Q ss_pred             EEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCC-CCCCCeEEEeecCCeEEEEE
Q psy12911        156 TINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDK-KKQPAGYGLGSVEGRVAIQY  234 (356)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~dg~i~i~~  234 (356)
                      .-...-....-...-+.+++...+..++++...+.+...+....  ......+.+.+-. ...+..|++-..+|.+++|.
T Consensus       211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S  288 (395)
T PF08596_consen  211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDD--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS  288 (395)
T ss_dssp             -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred             CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeecc--ccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence            11000000000001123566666788888888776544443321  1122223332100 01156788888999999999


Q ss_pred             eCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC
Q psy12911        235 VNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE  282 (356)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d  282 (356)
                      +..-  +.+..+......       +...+....++++|..++-.+..
T Consensus       289 LP~L--kei~~~~l~~~~-------d~~~~~~ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  289 LPSL--KEIKSVSLPPPL-------DSRRLSSSSISRNGDIFYWTGPS  327 (395)
T ss_dssp             TTT----EEEEEE-SS----------HHHHTT-EE-TTS-EEEE-SSS
T ss_pred             CCCc--hHhhcccCCCcc-------ccccccccEECCCCCEEEEeCcc
Confidence            8654  444444432210       00034566778899877766543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617|consensus

Probab=97.98  E-value=0.00065  Score=61.12  Aligned_cols=108  Identities=14%  Similarity=0.189  Sum_probs=84.0

Q ss_pred             EEEecCCCCCceEEEEEe----CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc
Q psy12911         34 CMAFSPSTLPQYFLIAGS----WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ  109 (356)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~----~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  109 (356)
                      -..|+|..   .++|+++    ..|.|.||--.. +...-.+.   .-.+++++|+|..-.|+.|-.-|.+.+|...+.+
T Consensus        20 i~SWHPse---PlfAVA~fS~er~GSVtIfadtG-EPqr~Vt~---P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e   92 (1416)
T KOG3617|consen   20 ISSWHPSE---PLFAVASFSPERGGSVTIFADTG-EPQRDVTY---PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE   92 (1416)
T ss_pred             ccccCCCC---ceeEEEEecCCCCceEEEEecCC-CCCccccc---ceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence            45699998   8998886    458898885432 21111112   2345679999988778888788999999998877


Q ss_pred             eee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC
Q psy12911        110 SMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT  150 (356)
Q Consensus       110 ~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  150 (356)
                      ... ...|..+|..+.|+  ++|..++++..-|.|.+|....
T Consensus        93 ~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   93 THTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeee
Confidence            666 56799999999999  9999999999999999998763

>smart00320 WD40 WD40 repeats

Probab=97.95  E-value=2.4e-05  Score=41.84  Aligned_cols=37  Identities=22%  Similarity=0.499  Sum_probs=32.9

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEe
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWE   60 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~   60 (356)
                      ....+..|...|.++.|++.+   .++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDG---KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCC---CEEEEecCCCeEEEcC
Confidence            455667899999999999998   8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.87  E-value=0.018  Score=51.67  Aligned_cols=145  Identities=11%  Similarity=0.047  Sum_probs=82.8

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCc--ceeEEEEccCCCeEEEEc------CCCeEEEEEcCCCceeeec-c
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE--PVLDVAWIDDGTKVFMAG------CDKTVKCWDLASNQSMQVA-Q  115 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~-~  115 (356)
                      ..++.++.|+.|.-.|..++...-......+..  .+.+--.--++ .++.+.      .+|.|..+|.++|+.+-.. .
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            356777889999999988843221111211111  12111111144 455543      2689999999999876411 0


Q ss_pred             ---c----------------------------CCCee-EEEEEeCCCCCeEEEEECC-----C-----------eEEEEe
Q psy12911        116 ---H----------------------------DAPVK-TCHWIKAPNYTCLMTGSWD-----K-----------TLKFWD  147 (356)
Q Consensus       116 ---~----------------------------~~~v~-~~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd  147 (356)
                         .                            ...+. .+.+.  ++..+++.+..+     +           .|.-.|
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D--~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld  277 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYD--PETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD  277 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEc--CCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence               0                            00111 12343  444555554421     2           688889


Q ss_pred             CCCCCceEEEeCCC----------eeEEEe--cCCC---eEEEEecCCeEEEEeCCCCcc
Q psy12911        148 LRTPQPIMTINLPE----------RCYCAD--VDYP---LAVVGTAGRGIVLYQLEGKPQ  192 (356)
Q Consensus       148 ~~~~~~~~~~~~~~----------~~~~~~--~~~~---~~~~~~~d~~i~i~d~~~~~~  192 (356)
                      +++++....++...          ..+.++  .++.   .++.+..+|.+.+.|-++++.
T Consensus       278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            99999887777421          122233  4554   677899999999999998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2444|consensus

Probab=97.84  E-value=2.8e-05  Score=58.63  Aligned_cols=144  Identities=11%  Similarity=0.056  Sum_probs=81.9

Q ss_pred             eEEEEECCCeEEEEeCCCCCce-EEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEee
Q psy12911        133 CLMTGSWDKTLKFWDLRTPQPI-MTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIF  211 (356)
Q Consensus       133 ~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  211 (356)
                      .+..-+.||.|+-++++..+.- +.-......+.+.-....+++|+.+|.|.+|............... ...+.++-..
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-~e~i~~~Ip~  110 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-EESIDLGIPN  110 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcc-cccceecccc
Confidence            3445567888888887654321 1111222224444556789999999999999987432222222211 1222222222


Q ss_pred             cCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE--cCCCeEEEEE
Q psy12911        212 RDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV--GSEGTFSFWD  289 (356)
Q Consensus       212 ~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~--~~dg~i~iwd  289 (356)
                      -+   ++.+..+++.+|.|+.|+....  +.+.....|...          ++.....+..+++++.+  |.|..++.|+
T Consensus       111 ~~---~~~~~c~~~~dg~ir~~n~~p~--k~~g~~g~h~~~----------~~e~~ivv~sd~~i~~a~~S~d~~~k~W~  175 (238)
T KOG2444|consen  111 GR---DSSLGCVGAQDGRIRACNIKPN--KVLGYVGQHNFE----------SGEELIVVGSDEFLKIADTSHDRVLKKWN  175 (238)
T ss_pred             cc---ccceeEEeccCCceeeeccccC--ceeeeeccccCC----------CcceeEEecCCceEEeeccccchhhhhcc
Confidence            11   1557889999999999988665  334444444311          44445555555666666  6666777777


Q ss_pred             cCc
Q psy12911        290 KDA  292 (356)
Q Consensus       290 ~~~  292 (356)
                      +..
T Consensus       176 ve~  178 (238)
T KOG2444|consen  176 VEK  178 (238)
T ss_pred             hhh
Confidence            653

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.84  E-value=0.00059  Score=62.51  Aligned_cols=135  Identities=10%  Similarity=-0.013  Sum_probs=86.2

Q ss_pred             ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCC---CCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKK---QPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG  253 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  253 (356)
                      .....++-.|++.++....... ....+  -..+.|+.+.   .+...++|-.+..+..||.+....+.+. -..+.   
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~-~~~~~--v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-~~~k~---  573 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKV-HDDIP--VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-SQSKQ---  573 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeec-CCCcc--eeEecccccccccCCCceEEEECCCceEEeccCCCCCceee-ccccc---
Confidence            3457788888888754322221 11222  3444454321   1446778888999999999865422221 11111   


Q ss_pred             CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                          ........|++-+.+| +||.|+.+|.||+||--..+....+.+-..+|.+|..+.||++|+.++.
T Consensus       574 ----Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  574 ----YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             ----cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence                0111157788877665 8999999999999995433334456677889999999999999988764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.016  Score=49.76  Aligned_cols=194  Identities=15%  Similarity=0.128  Sum_probs=127.4

Q ss_pred             eeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC---CCeEEEEEcCCC
Q psy12911         32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC---DKTVKCWDLASN  108 (356)
Q Consensus        32 V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~  108 (356)
                      -..++.++.+  .+..++...+..|.+.|..+.  ....... -......++++++++.++.+..   ++++.+.|..+.
T Consensus        76 p~~i~v~~~~--~~vyv~~~~~~~v~vid~~~~--~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~  150 (381)
T COG3391          76 PAGVAVNPAG--NKVYVTTGDSNTVSVIDTATN--TVLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN  150 (381)
T ss_pred             ccceeeCCCC--CeEEEecCCCCeEEEEcCccc--ceeeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence            3467788887  235555556689999997662  2222222 1226778999999988777665   689999999988


Q ss_pred             ceeeecc-cCCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCCCceE-E----EeC--CCeeEEEecCCCeEEEEecC
Q psy12911        109 QSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTPQPIM-T----INL--PERCYCADVDYPLAVVGTAG  179 (356)
Q Consensus       109 ~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-~----~~~--~~~~~~~~~~~~~~~~~~~d  179 (356)
                      +...... -..+ ..+++.  |++..++.+. .++.|.+.|.......+ .    +..  ......+++++..+++....
T Consensus       151 ~~~~~~~vG~~P-~~~a~~--p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~  227 (381)
T COG3391         151 KVTATIPVGNTP-TGVAVD--PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG  227 (381)
T ss_pred             eEEEEEecCCCc-ceEEEC--CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence            8776422 2234 888888  9998666555 78899999976665553 1    111  12356677788766665444


Q ss_pred             ---CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCC
Q psy12911        180 ---RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPA  238 (356)
Q Consensus       180 ---~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~  238 (356)
                         +.+...|..++............ ....+...|+    +..+.+.. ..+.+.+.|....
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~----g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPA----GKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccC-CCCceeECCC----CCEEEEEecCCCeEEEEeCCCC
Confidence               58888888887544332222233 5677888898    56666653 3477777766543

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.81  E-value=0.0073  Score=53.70  Aligned_cols=184  Identities=10%  Similarity=0.017  Sum_probs=108.8

Q ss_pred             ecCCCCCceEEEE-EeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC----CeEEEEEcCCCcee
Q psy12911         37 FSPSTLPQYFLIA-GSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD----KTVKCWDLASNQSM  111 (356)
Q Consensus        37 ~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~~  111 (356)
                      ++|+|   +.+.. .-..+.+.+.|.++  .....++.. .+....++++++|+++++.+.+    .++..-+.......
T Consensus       200 lpnDG---k~l~~~~ey~~~vSvID~et--meV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~  273 (635)
T PRK02888        200 LPNDG---KDLDDPKKYRSLFTAVDAET--MEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV  273 (635)
T ss_pred             cCCCC---CEeecccceeEEEEEEECcc--ceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceE
Confidence            45555   44432 22345677777766  233333332 2345678999999999888742    22333332221111


Q ss_pred             eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-----CCceEEEeCCCe--eEEEecCCCeEEEEe-cCCeEE
Q psy12911        112 QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-----PQPIMTINLPER--CYCADVDYPLAVVGT-AGRGIV  183 (356)
Q Consensus       112 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~d~~i~  183 (356)
                      ....-. .+.  ++.  ++|++...+  ++.|.+.|.++     .+.+..+..+..  .+.+++++.++++++ .+.++.
T Consensus       274 vvfni~-~ie--a~v--kdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVS  346 (635)
T PRK02888        274 VVFNIA-RIE--EAV--KAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVT  346 (635)
T ss_pred             EEEchH-HHH--Hhh--hCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEE
Confidence            111000 000  222  567766653  67899999998     466777776654  566778888766654 589999


Q ss_pred             EEeCCCCcccc---------ccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        184 LYQLEGKPQEF---------KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       184 i~d~~~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                      ++|+.+....+         ..............+|.++    +..+.+-.-|..|..|+++.
T Consensus       347 VIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~----G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        347 VIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR----GNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCC----CCEEEeEeecceeEEEehHH
Confidence            99998854311         1111122344556777777    67788888899999999864

>smart00320 WD40 WD40 repeats

Probab=97.81  E-value=7.1e-05  Score=39.88  Aligned_cols=36  Identities=39%  Similarity=0.617  Sum_probs=32.1

Q ss_pred             eeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911         69 PKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD  104 (356)
Q Consensus        69 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  104 (356)
                      ...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355667889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3621|consensus

Probab=97.81  E-value=0.00039  Score=61.04  Aligned_cols=137  Identities=18%  Similarity=0.177  Sum_probs=92.7

Q ss_pred             eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCC
Q psy12911        163 CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKD  242 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~  242 (356)
                      ..|++....+++.|+.-|.+++|+-..+........ .....+....++++    ..++++|+..|.|.++.++...+..
T Consensus        38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~-~~~~~~~~~~vs~~----e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE-GATGITCVRSVSSV----EYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             EEEeecCCceEEEecccceEEEEecCchhhhccccc-CccceEEEEEecch----hHhhhhhcCCceEEeehhhccCCCc
Confidence            456777788999999999999999877643322222 13344556667777    6788999999999999887643322


Q ss_pred             ccee-eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc----eecCCCCCCccceEEEEEC
Q psy12911        243 NFTF-KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR----TKLKPSEAMDMSISTCALN  312 (356)
Q Consensus       243 ~~~~-~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s  312 (356)
                      ...+ ..+..        |...|++++|++++..+++|...|+|..-.+.+.    -..+.+-...+.|..+...
T Consensus       113 ~~~~t~~d~~--------~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  113 LDYVTPCDKS--------HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             ceeecccccc--------CCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            2222 22221        1227999999999999999999999999888872    1112222335567666654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.013  Score=48.17  Aligned_cols=217  Identities=11%  Similarity=0.030  Sum_probs=121.0

Q ss_pred             EEccCCCe-EEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC
Q psy12911         83 AWIDDGTK-VFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE  161 (356)
Q Consensus        83 ~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  161 (356)
                      .|.++... +.+--..+.|.-|+..+++...+. +.+.+.++...  ..+..|+++.  ..+.+++.+++..+..+....
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~-~p~~~~~~~~~--d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP-SPGGFSSGALI--DAGGRLIACE--HGVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE-CCCCcccceee--cCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence            46666664 444445788999998877655443 33344444443  4445555543  336677776555533332111


Q ss_pred             --------eeEEEecCCCeEEEEec-----------CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEE
Q psy12911        162 --------RCYCADVDYPLAVVGTA-----------GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYG  222 (356)
Q Consensus       162 --------~~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  222 (356)
                              +-..+.+++.+.+....           -|.++.+|.....   ......+-...+.++|+|+    ++.+.
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~---~~l~~~~~~~~NGla~SpD----g~tly  178 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV---VRLLDDDLTIPNGLAFSPD----GKTLY  178 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE---EEeecCcEEecCceEECCC----CCEEE
Confidence                    12333444443332222           1334444432211   1111122344588999999    55555


Q ss_pred             Ee-ecCCeEEEEEeCCCCCCCcc----e-eeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC-eEEEEEcCccee
Q psy12911        223 LG-SVEGRVAIQYVNPANPKDNF----T-FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG-TFSFWDKDARTK  295 (356)
Q Consensus       223 ~~-~~dg~i~i~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg-~i~iwd~~~~~~  295 (356)
                      .+ +..+.|..|+++........    . +....+           ..-.++...+|.+.+++..+| .|.+|+.. |++
T Consensus       179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G-----------~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l  246 (307)
T COG3386         179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPG-----------LPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL  246 (307)
T ss_pred             EEeCCCCeEEEEecCcccCccCCcceEEEccCCCC-----------CCCceEEeCCCCEEEecccCCceEEEECCC-CcE
Confidence            55 45588888888632111111    1 111111           344677777888876555554 89999998 998


Q ss_pred             cCCCCCCccceEEEEEC-CCCCEEEEEec
Q psy12911        296 LKPSEAMDMSISTCALN-HNGQIFAYAVS  323 (356)
Q Consensus       296 ~~~~~~~~~~v~~~~~s-~~~~~l~~~s~  323 (356)
                      +..+.-....+++++|- |+.+.|.+++.
T Consensus       247 ~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         247 LGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            88887776788889986 56666666654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.78  E-value=0.0019  Score=55.73  Aligned_cols=205  Identities=14%  Similarity=0.083  Sum_probs=117.0

Q ss_pred             eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEE---CC-CeEEEEeCCCCCceEEE--eCCCeeEEEecCCCe
Q psy12911         99 TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGS---WD-KTLKFWDLRTPQPIMTI--NLPERCYCADVDYPL  172 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d-g~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~  172 (356)
                      .+.+-|........+......+..-+|+  +++..++...   .. ..+.++|+.+++.....  .+......+++++..
T Consensus       174 ~l~~~D~dg~~~~~l~~~~~~~~~p~ws--~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYDGYNQQKLTDSGSLILTPAWS--PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccCCcceeEecccCcceeccccC--cCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCE
Confidence            4444454422222344455667777888  7877765542   22 35999999998655444  455566777888876


Q ss_pred             EEE-EecCC--eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe-ecCCeEEEEEeCCCCCCCcceeee
Q psy12911        173 AVV-GTAGR--GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG-SVEGRVAIQYVNPANPKDNFTFKC  248 (356)
Q Consensus       173 ~~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~~~~~~~~~~  248 (356)
                      ++. ...++  .|.++|+.++....  .. ...+.-..-.|+|+    +..++.. +..|.-.||-++...... ..+..
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~~--Lt-~~~gi~~~Ps~spd----G~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~  323 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLPR--LT-NGFGINTSPSWSPD----GSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF  323 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCccee--cc-cCCccccCccCCCC----CCEEEEEeCCCCCcceEEECCCCCce-eEeec
Confidence            554 44555  46666777665222  21 12222236677888    5565554 456665666554332222 22222


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEEEEEcC-CCe--EEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS-EGT--FSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ...           .-..-.|+|||++|+..+. +|.  |.+.|+.++.....+. .......-.|.++|+.+...++..
T Consensus       324 ~~~-----------~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         324 SGG-----------GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             cCC-----------CCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence            111           1225679999998887664 344  6666766655333332 233344567889999988887644

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.78  E-value=0.0011  Score=60.90  Aligned_cols=141  Identities=11%  Similarity=0.068  Sum_probs=95.6

Q ss_pred             CCeEEEE-ECCCeEEEEeCCCCCceEEEeCCCee--EEEecC-------CCeEEEEecCCeEEEEeCCCCcccccc---c
Q psy12911        131 YTCLMTG-SWDKTLKFWDLRTPQPIMTINLPERC--YCADVD-------YPLAVVGTAGRGIVLYQLEGKPQEFKK---T  197 (356)
Q Consensus       131 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~d~~i~i~d~~~~~~~~~~---~  197 (356)
                      ..+|+.. .....|+-.|++.|+.+..+..+...  ..+.+.       ....++|-.++.+..||.|-.......   .
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3344433 34578999999999999999877643  444443       236788999999999999975422111   0


Q ss_pred             cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEE
Q psy12911        198 ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLA  277 (356)
Q Consensus       198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~  277 (356)
                      .-.......|++-..+     ..+|+|+.+|.|++||--..  .....+++-..           +|..|..+.||++|+
T Consensus       573 ~Y~~~~~Fs~~aTt~~-----G~iavgs~~G~IRLyd~~g~--~AKT~lp~lG~-----------pI~~iDvt~DGkwil  634 (794)
T PF08553_consen  573 QYSSKNNFSCFATTED-----GYIAVGSNKGDIRLYDRLGK--RAKTALPGLGD-----------PIIGIDVTADGKWIL  634 (794)
T ss_pred             ccccCCCceEEEecCC-----ceEEEEeCCCcEEeecccch--hhhhcCCCCCC-----------CeeEEEecCCCcEEE
Confidence            1123345677776666     47999999999999984322  22223333333           899999999999998


Q ss_pred             EEcCCCeEEEEEc
Q psy12911        278 TVGSEGTFSFWDK  290 (356)
Q Consensus       278 s~~~dg~i~iwd~  290 (356)
                      +.+.. .|.+++.
T Consensus       635 aTc~t-yLlLi~t  646 (794)
T PF08553_consen  635 ATCKT-YLLLIDT  646 (794)
T ss_pred             Eeecc-eEEEEEE
Confidence            87654 5667764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4441|consensus

Probab=97.75  E-value=0.0069  Score=54.67  Aligned_cols=227  Identities=16%  Similarity=0.142  Sum_probs=123.4

Q ss_pred             CCCeEEEEcCC------CeEEEEEcCCCceeeec--ccCCCeeEEEEEeCCCCCeEEEEECC------CeEEEEeCCCCC
Q psy12911         87 DGTKVFMAGCD------KTVKCWDLASNQSMQVA--QHDAPVKTCHWIKAPNYTCLMTGSWD------KTLKFWDLRTPQ  152 (356)
Q Consensus        87 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~  152 (356)
                      .+..++.|+.+      ..+..+|..+++.....  .....-.+++.   -++.+.++|+.|      .++..||.++++
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~---~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV---LNGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE---ECCEEEEEccccCCCcccceEEEecCCCCc
Confidence            45566777776      46888999888655422  23333455555   456788999988      358889988876


Q ss_pred             ceE--EEeCCCe-eEEEecCCCeEEEEecCC-----eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe
Q psy12911        153 PIM--TINLPER-CYCADVDYPLAVVGTAGR-----GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG  224 (356)
Q Consensus       153 ~~~--~~~~~~~-~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  224 (356)
                      -..  .+..... .-.....+...++|+.||     ++..||..+..-.....   +.......+...-.   +...++|
T Consensus       361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~---m~~~r~~~gv~~~~---g~iYi~G  434 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP---MLTRRSGHGVAVLG---GKLYIIG  434 (571)
T ss_pred             eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC---CCcceeeeEEEEEC---CEEEEEc
Confidence            333  1122222 233344556777787775     57788887764222211   11122222222111   5678888


Q ss_pred             ecCC------eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC-----eEEEEEcCcc
Q psy12911        225 SVEG------RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG-----TFSFWDKDAR  293 (356)
Q Consensus       225 ~~dg------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg-----~i~iwd~~~~  293 (356)
                      +.++      .+..||...+....+..+...+.           ......+  ++.+.+.|+.|+     +|..||..+.
T Consensus       435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-----------~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-----------GFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             CcCCCccccceEEEEcCCCCceeecCCcccccc-----------cceEEEE--CCEEEEECCccCCCccceEEEEcCCCC
Confidence            8554      35667766665544444443332           2222222  577888888776     3778887765


Q ss_pred             e--ecCCCCCCccceEEEEECCCCCEEEEEeccC--CcCCCccCCCCC
Q psy12911        294 T--KLKPSEAMDMSISTCALNHNGQIFAYAVSYD--WSKGHEHNNPNK  337 (356)
Q Consensus       294 ~--~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d--~~~~~~~~~~~~  337 (356)
                      +  .+..+......+..+.  -+++..+.|+.+.  .....+.|+|..
T Consensus       502 ~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  502 QWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             ceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCC
Confidence            3  3333332222222222  2556666665333  233445566654

>KOG4640|consensus

Probab=97.74  E-value=0.00026  Score=61.25  Aligned_cols=80  Identities=13%  Similarity=0.180  Sum_probs=68.8

Q ss_pred             CcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCee-EEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce
Q psy12911         76 SEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVK-TCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI  154 (356)
Q Consensus        76 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  154 (356)
                      ...|.-+.|+|.-..+|.+..+|.|.+..++-.+...+.-+...++ +++|.  |||+.|+.|-.||+|++.|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~--~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWR--PDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeec--CCCCEEEEEecCCeEEEEEccCCCce
Confidence            4567889999999999999999999999998555444555777777 99999  99999999999999999999999887


Q ss_pred             EEE
Q psy12911        155 MTI  157 (356)
Q Consensus       155 ~~~  157 (356)
                      ...
T Consensus        98 ~~~  100 (665)
T KOG4640|consen   98 VSF  100 (665)
T ss_pred             ecc
Confidence            773

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.69  E-value=0.023  Score=48.11  Aligned_cols=234  Identities=9%  Similarity=0.044  Sum_probs=97.4

Q ss_pred             CCCeEEEEc-CCCeEEEEEcCCC----ceeeecc----c--C--CCeeEEEEEeCCCCCeEEEEEC------CCeEEEEe
Q psy12911         87 DGTKVFMAG-CDKTVKCWDLASN----QSMQVAQ----H--D--APVKTCHWIKAPNYTCLMTGSW------DKTLKFWD  147 (356)
Q Consensus        87 ~~~~l~~~~-~dg~i~vwd~~~~----~~~~~~~----~--~--~~v~~~~~~~~~~~~~l~~~~~------dg~i~iwd  147 (356)
                      +.++|+..+ ..+.|.|.|+.+.    ++.+...    +  .  ..-..+...  |+|+.++++-.      -|.+.++|
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hcl--p~G~imIS~lGd~~G~g~Ggf~llD  163 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCL--PDGRIMISALGDADGNGPGGFVLLD  163 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE---SS--EEEEEEEETTS-S--EEEEE-
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeec--CCccEEEEeccCCCCCCCCcEEEEc
Confidence            445676666 5789999999853    2222111    0  1  111122222  88888887532      24588888


Q ss_pred             CCCCCceEEEeCCCe------eEEEecCCCeEEEE--------------------ecCCeEEEEeCCCCccccccccCcc
Q psy12911        148 LRTPQPIMTINLPER------CYCADVDYPLAVVG--------------------TAGRGIVLYQLEGKPQEFKKTESPL  201 (356)
Q Consensus       148 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--------------------~~d~~i~i~d~~~~~~~~~~~~~~~  201 (356)
                      -++.+.....+....      -+...+..+.+++.                    ....++.+||+.+.+.....-....
T Consensus       164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            877776666654321      11222222333332                    3467999999998865444333222


Q ss_pred             cccceEEEeecCCCCCCCeEEEeecCCeEEEEEe-CCCCCC--CcceeeeecCCCC-CCC----c-ccccceEEEEEeCC
Q psy12911        202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV-NPANPK--DNFTFKCHRSNGG-AGG----V-QDIYAVNGIVFHPV  272 (356)
Q Consensus       202 ~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~-~~~~~~--~~~~~~~~~~~~~-~~~----~-~~~~~i~~i~~sp~  272 (356)
                      ...+..+.|..+... ..-++.+.-..+|..|-- +.+...  .+..+.......- ...    . .-..-|+.|..|.|
T Consensus       244 g~~pLEvRflH~P~~-~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD  322 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDA-NYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD  322 (461)
T ss_dssp             EEEEEEEEE-SSTT---EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred             CCceEEEEecCCCCc-cceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence            334567777766433 233444444555554433 222111  1111111100000 000    0 00015899999999


Q ss_pred             CCEEEEEc-CCCeEEEEEcCcc---eecCC--------------CC--CCccceEEEEECCCCCEEEEEec
Q psy12911        273 HGTLATVG-SEGTFSFWDKDAR---TKLKP--------------SE--AMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       273 ~~~l~s~~-~dg~i~iwd~~~~---~~~~~--------------~~--~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      .++|...+ .+|.|+.||+...   +++.+              .+  .-.+...-+..|-||+.|..+.+
T Consensus       323 DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  323 DRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             S-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             CCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            99887655 5899999999753   22111              11  11234577899999999988765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.67  E-value=0.03  Score=48.96  Aligned_cols=226  Identities=12%  Similarity=0.178  Sum_probs=110.3

Q ss_pred             ceeEEEEccCCCeEEEE-cCC----CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCC-----------
Q psy12911         78 PVLDVAWIDDGTKVFMA-GCD----KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK-----------  141 (356)
Q Consensus        78 ~v~~~~~s~~~~~l~~~-~~d----g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----------  141 (356)
                      .+....++|+|+++|.+ +..    ..++++|+++++.+.-.-.......+.|.  ++++.|+....+.           
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~--~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWS--DDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEEC--TTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEe--CCCCEEEEEEeCcccccccCCCCc
Confidence            44467899999988865 222    46999999999876521111122239999  8888877765433           


Q ss_pred             eEEEEeCCCCCc--eEEEeCCCe-----eEEEecCCCeEEEEec---C-CeEEEEeCCCC---ccccccccCcccccceE
Q psy12911        142 TLKFWDLRTPQP--IMTINLPER-----CYCADVDYPLAVVGTA---G-RGIVLYQLEGK---PQEFKKTESPLKYQNRC  207 (356)
Q Consensus       142 ~i~iwd~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~---d-~~i~i~d~~~~---~~~~~~~~~~~~~~i~~  207 (356)
                      .|+.|.+.+...  ...+.....     .+..+.++.++++...   + ..+.+.++...   ......+..........
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~  282 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY  282 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence            378888877643  244443332     2334555666554322   2 45788888764   22222222122222222


Q ss_pred             EEeecCCCCCCCeEEEee---cCCeEEEEEeCCCCCCCcc-eeeeecCCCCCCCcccccceEEEEEeCCCCE-EEEEcCC
Q psy12911        208 IAIFRDKKKQPAGYGLGS---VEGRVAIQYVNPANPKDNF-TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGT-LATVGSE  282 (356)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~---~dg~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~-l~s~~~d  282 (356)
                      +... .    +.+++...   ..+.|...++......... .+..+...         ..+..+..  .+.+ ++....+
T Consensus       283 v~~~-~----~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~---------~~l~~~~~--~~~~Lvl~~~~~  346 (414)
T PF02897_consen  283 VDHH-G----DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED---------VSLEDVSL--FKDYLVLSYREN  346 (414)
T ss_dssp             EEEE-T----TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS---------EEEEEEEE--ETTEEEEEEEET
T ss_pred             EEcc-C----CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc---------eeEEEEEE--ECCEEEEEEEEC
Confidence            3222 2    23333332   2344444444433211111 33333320         02444444  3444 4444445


Q ss_pred             C--eEEEEEcC-cceecCCCCCCccceEEEEECCCCCEEEEE
Q psy12911        283 G--TFSFWDKD-ARTKLKPSEAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       283 g--~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                      +  .|+++++. ..........-.+.|..+...+++..+...
T Consensus       347 ~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~  388 (414)
T PF02897_consen  347 GSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFS  388 (414)
T ss_dssp             TEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEE
T ss_pred             CccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEE
Confidence            4  58899998 433322222223456666666666655444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PHA02713 hypothetical protein; Provisional

Probab=97.65  E-value=0.018  Score=52.15  Aligned_cols=214  Identities=9%  Similarity=0.087  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCceeeecccCCCe--eEEEEEeCCCCCeEEEEECC------CeEEEEeCCCCCceE--EEeCCC-eeEEEe
Q psy12911         99 TVKCWDLASNQSMQVAQHDAPV--KTCHWIKAPNYTCLMTGSWD------KTLKFWDLRTPQPIM--TINLPE-RCYCAD  167 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~-~~~~~~  167 (356)
                      .+..||..+++...+..-..+.  .+++.   .++.+++.||.+      ..+..||..+.+-..  .+..+. ......
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~---l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI---VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE---ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence            5778888887655432211111  22333   456777777754      347788987764321  111111 122334


Q ss_pred             cCCCeEEEEecC-----CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC--------------
Q psy12911        168 VDYPLAVVGTAG-----RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG--------------  228 (356)
Q Consensus       168 ~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg--------------  228 (356)
                      ..+...++|+.+     ..+..||..++.-...... +....-.+++. -+    +..+++|+.++              
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m-p~~r~~~~~~~-~~----g~IYviGG~~~~~~~~~~~~~~~~~  423 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM-PIALSSYGMCV-LD----QYIYIIGGRTEHIDYTSVHHMNSID  423 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCC-CcccccccEEE-EC----CEEEEEeCCCccccccccccccccc
Confidence            445555666654     3578899887532111110 11111111221 23    56777777543              


Q ss_pred             ---------eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC------CeEEEEEcCc-
Q psy12911        229 ---------RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE------GTFSFWDKDA-  292 (356)
Q Consensus       229 ---------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d------g~i~iwd~~~-  292 (356)
                               .+..||........+..+...+.           .. +++ .-++++.+.|+.+      ..+..||..+ 
T Consensus       424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-----------~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~  490 (557)
T PHA02713        424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-----------RP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTY  490 (557)
T ss_pred             ccccccccceEEEECCCCCeEeecCCCCcccc-----------cC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCC
Confidence                     35556655543333322221111           11 122 2256777777654      2467899876 


Q ss_pred             --ceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCC
Q psy12911        293 --RTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNK  337 (356)
Q Consensus       293 --~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~  337 (356)
                        .+.+..+.........+++  +|+..++|+-++. ...+.||+..
T Consensus       491 ~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~-~~~e~yd~~~  534 (557)
T PHA02713        491 NGWELITTTESRLSALHTILH--DNTIMMLHCYESY-MLQDTFNVYT  534 (557)
T ss_pred             CCeeEccccCcccccceeEEE--CCEEEEEeeecce-eehhhcCccc
Confidence              3445555433333333333  7788888875553 3556666663

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.58  E-value=0.044  Score=47.88  Aligned_cols=240  Identities=17%  Similarity=0.164  Sum_probs=123.7

Q ss_pred             CeeEEEecCCCCCceEEEEE-eCCC----eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC--------
Q psy12911         31 SISCMAFSPSTLPQYFLIAG-SWDN----NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD--------   97 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~-~~dg----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------   97 (356)
                      .+....++|++   ++||.+ +..|    .++++|++++ ..+...+..  ..-..+.|.++++.|+....+        
T Consensus       125 ~~~~~~~Spdg---~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  125 SLGGFSVSPDG---KRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEEEEETTTS---SEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred             EeeeeeECCCC---CEEEEEecCCCCceEEEEEEECCCC-cCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccC
Confidence            34467899999   777765 4444    5999999983 333233322  122239999998877655432        


Q ss_pred             ---CeEEEEEcCCCcee---eecccCCC--eeEEEEEeCCCCCeEEEEECC----CeEEEEeCCCC----CceEEEeC--
Q psy12911         98 ---KTVKCWDLASNQSM---QVAQHDAP--VKTCHWIKAPNYTCLMTGSWD----KTLKFWDLRTP----QPIMTINL--  159 (356)
Q Consensus        98 ---g~i~vwd~~~~~~~---~~~~~~~~--v~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~----~~~~~~~~--  159 (356)
                         ..|+.|.+.+....   .+.+....  ...+..+  .++++|+.....    ..+.+.|+..+    .....+..  
T Consensus       199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s--~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~  276 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS--KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE  276 (414)
T ss_dssp             GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred             CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec--CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence               24788888776532   23333332  5577777  999987754432    35888888774    23333332  


Q ss_pred             CCeeEEEecCCCeEEEEec----CCeEEEEeCCCCccc-cccccCcccc--cceEEEeecCCCCCCCeEEEeecCCe--E
Q psy12911        160 PERCYCADVDYPLAVVGTA----GRGIVLYQLEGKPQE-FKKTESPLKY--QNRCIAIFRDKKKQPAGYGLGSVEGR--V  230 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~-~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~dg~--i  230 (356)
                      ......+...+..++..+.    .+.|...++...... ......++..  .+..+....+     .+++....++.  |
T Consensus       277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-----~Lvl~~~~~~~~~l  351 (414)
T PF02897_consen  277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-----YLVLSYRENGSSRL  351 (414)
T ss_dssp             SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-----EEEEEEEETTEEEE
T ss_pred             CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC-----EEEEEEEECCccEE
Confidence            2223334444554444332    467878888776431 1111112222  4455555433     34555555555  4


Q ss_pred             EEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEE-EEc-C--CCeEEEEEcCccee
Q psy12911        231 AIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLA-TVG-S--EGTFSFWDKDARTK  295 (356)
Q Consensus       231 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~-s~~-~--dg~i~iwd~~~~~~  295 (356)
                      +++++.  .......+.....          ..|..+...+++..+. +-+ .  -+++..||+.+++.
T Consensus       352 ~v~~~~--~~~~~~~~~~p~~----------g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  352 RVYDLD--DGKESREIPLPEA----------GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEETT---TEEEEEEESSSS----------SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EEEECC--CCcEEeeecCCcc----------eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            555555  1122222222111          1355555555554332 222 1  35788888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.56  E-value=0.022  Score=51.56  Aligned_cols=105  Identities=12%  Similarity=0.100  Sum_probs=66.6

Q ss_pred             CCeeEEEecCCCCCceEEEEEe------CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC------
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGS------WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD------   97 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~------~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------   97 (356)
                      ..+.+.+++|+|   +.+|...      .|..-.||-...++.. .....+  ...+.-.|+|||+.|++....      
T Consensus       350 ~~vsspaiSpdG---~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        350 GNITSAALSRSG---RQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cCcccceECCCC---CEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecC--CCCCCceECCCCCceEEEecCcceEEE
Confidence            467889999999   6666554      2444455544332222 122333  247889999998877776532      


Q ss_pred             ------CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEE
Q psy12911         98 ------KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF  145 (356)
Q Consensus        98 ------g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i  145 (356)
                            +.+.+.++..++...  ...+.|..+.|+  +||..++... ++.|.+
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wS--pDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLS--RDGVRAAMII-GGKVYL  472 (591)
T ss_pred             eccCCCceEEEEeccCchhhh--ccCCCcCeEEEC--CCCCEEEEEE-CCEEEE
Confidence                  234444554444332  345679999999  9999888766 577777

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.046  Score=47.03  Aligned_cols=260  Identities=16%  Similarity=0.078  Sum_probs=158.4

Q ss_pred             CeeEEEecCCCCCceEEEEEe-CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE-EcCCCeEEEEEcCCC
Q psy12911         31 SISCMAFSPSTLPQYFLIAGS-WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM-AGCDKTVKCWDLASN  108 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~  108 (356)
                      ....+.+.+++   ..+.... ....+.+.+...  .........-...-..++.++.+..++. ...++.|.+.|..+.
T Consensus        32 ~~~~v~~~~~g---~~~~v~~~~~~~~~~~~~~~--n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~  106 (381)
T COG3391          32 GPGGVAVNPDG---TQVYVANSGSNDVSVIDATS--NTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN  106 (381)
T ss_pred             CCceeEEcCcc---CEEEEEeecCceeeeccccc--ceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccc
Confidence            55567778877   4444333 222444444432  1111111111134457788888875554 444689999998887


Q ss_pred             ceeeecccCCCeeEEEEEeCCCCCeEEEEEC---CCeEEEEeCCCCCceEEEeCCC--eeEEEecCCCeEEEEe-cCCeE
Q psy12911        109 QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW---DKTLKFWDLRTPQPIMTINLPE--RCYCADVDYPLAVVGT-AGRGI  182 (356)
Q Consensus       109 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~d~~i  182 (356)
                      .......-......+++.  ++++.+..+..   ++.+.+.|..+++.+.+.....  .-+.+++.+..+++.. .++.|
T Consensus       107 ~~~~~~~vG~~P~~~~~~--~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v  184 (381)
T COG3391         107 TVLGSIPVGLGPVGLAVD--PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTV  184 (381)
T ss_pred             ceeeEeeeccCCceEEEC--CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeE
Confidence            777654444477788898  88877776665   6889999999988888866432  4567778888666655 78999


Q ss_pred             EEEeCCCCccccccc---cCcccccceEEEeecCCCCCCCeEEEeecC---CeEEEEEeCCCCCCCcce-eeeecCCCCC
Q psy12911        183 VLYQLEGKPQEFKKT---ESPLKYQNRCIAIFRDKKKQPAGYGLGSVE---GRVAIQYVNPANPKDNFT-FKCHRSNGGA  255 (356)
Q Consensus       183 ~i~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d---g~i~i~~~~~~~~~~~~~-~~~~~~~~~~  255 (356)
                      .++|........ ..   ..........+.+.++    +..+.+....   +.+...|.....  .... ......    
T Consensus       185 ~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~----g~~~yV~~~~~~~~~v~~id~~~~~--v~~~~~~~~~~----  253 (381)
T COG3391         185 SVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPD----GNRVYVANDGSGSNNVLKIDTATGN--VTATDLPVGSG----  253 (381)
T ss_pred             EEEeCCCcceec-cccccccccCCCCceEEECCC----CCEEEEEeccCCCceEEEEeCCCce--EEEeccccccC----
Confidence            999977654321 11   1223345577888888    5544444333   466666665431  1111 111110    


Q ss_pred             CCcccccceEEEEEeCCCCEEEEE-cCCCeEEEEEcCcceecCCCCCC---ccceEEEEECCCC
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLATV-GSEGTFSFWDKDARTKLKPSEAM---DMSISTCALNHNG  315 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~  315 (356)
                             ....+..+|+|.++.+. +..+.+.+-|..+..........   ...+..+++.+..
T Consensus       254 -------~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         254 -------APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             -------CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence                   13458899999888877 44588999998887766654432   2345566665544

>KOG2444|consensus

Probab=97.52  E-value=0.00047  Score=52.24  Aligned_cols=70  Identities=14%  Similarity=0.174  Sum_probs=46.1

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeec
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVA  114 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  114 (356)
                      .-+++|+.+|.|.+|+....+...-....+-......+.--.++.+..+++.||.|+.|++.-.+.+...
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~  140 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV  140 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence            6788999999999999875333221222222222222333335668889999999999999888776643

>KOG2079|consensus

Probab=97.52  E-value=0.0012  Score=60.90  Aligned_cols=101  Identities=22%  Similarity=0.387  Sum_probs=72.8

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEE
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTC  123 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~  123 (356)
                      ..++.|+..|.+-..|...+ ......-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++..+ +..|..+...+
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            56888888889998888763 11112223346799999999999999999999999999999988877 55566555554


Q ss_pred             EEEeC-CCCCeEEEEECCCeEEEEeC
Q psy12911        124 HWIKA-PNYTCLMTGSWDKTLKFWDL  148 (356)
Q Consensus       124 ~~~~~-~~~~~l~~~~~dg~i~iwd~  148 (356)
                      -+..- .++..++++...|.  +|.+
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEEE
Confidence            43311 45556888877776  5554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.47  E-value=0.036  Score=44.07  Aligned_cols=197  Identities=11%  Similarity=0.115  Sum_probs=104.8

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccC-CcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM-SEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      .+.+-.+.+..++|+|+.  +.++++....+.|..++.+  +.. ++.+.-. .+..-.|++..++.++++--.++.+.+
T Consensus        16 ~l~g~~~e~SGLTy~pd~--~tLfaV~d~~~~i~els~~--G~v-lr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDT--GTLFAVQDEPGEIYELSLD--GKV-LRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYI   90 (248)
T ss_dssp             E-TT--S-EEEEEEETTT--TEEEEEETTTTEEEEEETT----E-EEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred             ECCCccCCccccEEcCCC--CeEEEEECCCCEEEEEcCC--CCE-EEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence            455566679999999986  2677777778888777764  333 3443322 456788999888877776666899999


Q ss_pred             EEcCCCc----e-----ee--e-cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC---CCceEEEeC--------
Q psy12911        103 WDLASNQ----S-----MQ--V-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT---PQPIMTINL--------  159 (356)
Q Consensus       103 wd~~~~~----~-----~~--~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~--------  159 (356)
                      +++....    .     ..  + ..++..+-.++|.  +.++.|+.+-+..-..+|.+..   ...+.....        
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D--~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD--PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEE--TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEc--CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence            9884321    1     11  1 1355678999999  7777777777776677776654   222221110        


Q ss_pred             ---CCeeEEEecCCC-eEEEEecCCeEEEEeCCCCccccccccCcc------cccceEEEeecCCCCCCCeEEEeecCCe
Q psy12911        160 ---PERCYCADVDYP-LAVVGTAGRGIVLYQLEGKPQEFKKTESPL------KYQNRCIAIFRDKKKQPAGYGLGSVEGR  229 (356)
Q Consensus       160 ---~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~dg~  229 (356)
                         .-..+.+++..+ +++.......|..+|...............      -.+...|++.++    +.++ +.+.-+.
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~----G~LY-IvsEpNl  243 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPD----GNLY-IVSEPNL  243 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT------EE-EEETTTE
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCC----CCEE-EEcCCce
Confidence               112344444443 556666678888888665533322222211      135678888887    5444 4444444


Q ss_pred             EEE
Q psy12911        230 VAI  232 (356)
Q Consensus       230 i~i  232 (356)
                      .++
T Consensus       244 fy~  246 (248)
T PF06977_consen  244 FYR  246 (248)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.46  E-value=0.062  Score=46.62  Aligned_cols=166  Identities=13%  Similarity=0.140  Sum_probs=88.7

Q ss_pred             eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeee--ccc-----CCCeeEEEEEe
Q psy12911         55 NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV--AQH-----DAPVKTCHWIK  127 (356)
Q Consensus        55 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~-----~~~v~~~~~~~  127 (356)
                      .|.||+...  ..+ ..+.-..+.|.++.|+.+. .|+....||.++++|+.......+  ...     ...+....+. 
T Consensus        62 ~I~iys~sG--~ll-~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~-  136 (410)
T PF04841_consen   62 SIQIYSSSG--KLL-SSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFY-  136 (410)
T ss_pred             EEEEECCCC--CEe-EEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccC-
Confidence            588888765  333 3333233899999999865 566667899999999874430001  011     1222222332 


Q ss_pred             CCCCCeEEEEECCCeEEEEeCCCCC-ceEEE-eCCC------------eeEEEecCCCeEEEEecCCeEEEEeCCCCccc
Q psy12911        128 APNYTCLMTGSWDKTLKFWDLRTPQ-PIMTI-NLPE------------RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQE  193 (356)
Q Consensus       128 ~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~-~~~~------------~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  193 (356)
                       .+|-.++  ..++.+.+..-.... ..+.+ ..+.            .+..+.......+....++.+.+.+-..-.. 
T Consensus       137 -~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-  212 (410)
T PF04841_consen  137 -KNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-  212 (410)
T ss_pred             -CCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-
Confidence             3553333  334555444322211 11111 1111            0112233333444445555666444332110 


Q ss_pred             cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        194 FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                           ....+++..+++||+    +..++.-..+|.+.+...+..
T Consensus       213 -----i~~~~~i~~iavSpn----g~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  213 -----IDSDGPIIKIAVSPN----GKFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             -----ccCCCCeEEEEECCC----CCEEEEEECCCCEEEEECccc
Confidence                 112467999999999    789999999999888876554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2395|consensus

Probab=97.40  E-value=0.0044  Score=53.04  Aligned_cols=138  Identities=12%  Similarity=0.111  Sum_probs=90.6

Q ss_pred             EEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEe--cCC-------CeEEEEecCCeEEEEeCCCCccccccccCc----
Q psy12911        134 LMTGSWDKTLKFWDLRTPQPIMTINLPERCYCAD--VDY-------PLAVVGTAGRGIVLYQLEGKPQEFKKTESP----  200 (356)
Q Consensus       134 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----  200 (356)
                      +.++.....++-.|++.|+.+.....+..+....  ++.       ..-++|-.+..|.-||.+-...........    
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~  428 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS  428 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence            3445555678889999999999888776533332  222       245778889999999998554321111111    


Q ss_pred             ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        201 LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       201 ~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                      .+....|.+-..+     .++++|+.+|.|++||--..  .....+++-..           +|..+..+.+|++|++.+
T Consensus       429 ~k~nFsc~aTT~s-----G~IvvgS~~GdIRLYdri~~--~AKTAlPgLG~-----------~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  429 TKNNFSCFATTES-----GYIVVGSLKGDIRLYDRIGR--RAKTALPGLGD-----------AIKHVDVTADGKWILATC  490 (644)
T ss_pred             cccccceeeecCC-----ceEEEeecCCcEEeehhhhh--hhhhcccccCC-----------ceeeEEeeccCcEEEEec
Confidence            2233455555544     58999999999999987332  22233444444           899999999999988776


Q ss_pred             CCCeEEEEEc
Q psy12911        281 SEGTFSFWDK  290 (356)
Q Consensus       281 ~dg~i~iwd~  290 (356)
                      . ..+.+-++
T Consensus       491 ~-tyLlLi~t  499 (644)
T KOG2395|consen  491 K-TYLLLIDT  499 (644)
T ss_pred             c-cEEEEEEE
Confidence            4 45666554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.38  E-value=0.00078  Score=37.65  Aligned_cols=33  Identities=12%  Similarity=0.233  Sum_probs=29.7

Q ss_pred             ceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceec
Q psy12911        263 AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKL  296 (356)
Q Consensus       263 ~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  296 (356)
                      .|..++|+|...+||.+..+|.|.++.+ +++.+
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            6999999999999999999999999999 45543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.33  E-value=0.093  Score=47.69  Aligned_cols=191  Identities=13%  Similarity=0.073  Sum_probs=103.4

Q ss_pred             CCcceeEEEEccCCCeEEEEc------CCC--eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC------
Q psy12911         75 MSEPVLDVAWIDDGTKVFMAG------CDK--TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD------  140 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~~l~~~~------~dg--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------  140 (356)
                      ....+.+.+++|+|+.++...      .|+  .|.+++.. +....+.. ......-.|+  ++|..|++....      
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~-g~~~t~PsWs--pDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLE-GHSLTRPSWS--LDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccceeeec-CCCCCCceEC--CCCCceEEEecCcceEEE
Confidence            334678999999999887665      243  55555653 33333322 2237788899  887777666422      


Q ss_pred             ------CeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEE---EeCCCCcccc---ccccCcccccceEE
Q psy12911        141 ------KTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVL---YQLEGKPQEF---KKTESPLKYQNRCI  208 (356)
Q Consensus       141 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i---~d~~~~~~~~---~~~~~~~~~~i~~~  208 (356)
                            +.+.+.++..++....+...-..+.+++++..++... ++.|.+   -....+...+   ..........+..+
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             eccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence                  3444445555444333344445677788888776655 467776   3433332111   11122233345788


Q ss_pred             EeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEE
Q psy12911        209 AIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSF  287 (356)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~i  287 (356)
                      .|..+    +. |+++..++...+|.+........ .+....-         ..++..++-++.  .|+....+|.+.+
T Consensus       503 ~W~~~----~~-L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~---------~~~v~~vaa~~~--~iyv~~~~g~~~l  564 (591)
T PRK13616        503 DWRTG----DS-LVVGRSDPEHPVWYVNLDGSNSD-ALPSRNL---------SAPVVAVAASPS--TVYVTDARAVLQL  564 (591)
T ss_pred             eEecC----CE-EEEEecCCCCceEEEecCCcccc-ccCCCCc---------cCceEEEecCCc--eEEEEcCCceEEe
Confidence            89988    55 45666555555665543321111 1121100         116777777763  4555566664443

>KOG2395|consensus

Probab=97.30  E-value=0.0052  Score=52.62  Aligned_cols=140  Identities=9%  Similarity=0.036  Sum_probs=90.1

Q ss_pred             EEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCC---CCCeEEEeecCCeEEEEEeCCCCCCCcceeeee
Q psy12911        173 AVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKK---QPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH  249 (356)
Q Consensus       173 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  249 (356)
                      +..+.....++-.|++.++......   ....|.-+.+.|+.+.   ....-++|-.+..|.-||.+......+.....|
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk---~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWK---FEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEee---ccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence            3445556777777887775322221   1223677777777542   133456677888888898875443233333333


Q ss_pred             cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      .-..       .+...|.+-..+ .++|+|+.+|.||+||--..+....+.+...+|..|..+.||++|+..+.
T Consensus       426 qy~~-------k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  426 QYST-------KNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             cccc-------ccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence            3211       114566666555 48999999999999997433344557788889999999999999887764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.29  E-value=0.083  Score=44.41  Aligned_cols=223  Identities=16%  Similarity=0.099  Sum_probs=102.7

Q ss_pred             EEEccCCCeEEEEcC---CCeEEEEEcCCCceeeecccCCC-eeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE
Q psy12911         82 VAWIDDGTKVFMAGC---DKTVKCWDLASNQSMQVAQHDAP-VKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI  157 (356)
Q Consensus        82 ~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  157 (356)
                      =+|.+||+.|+.++.   ...+.+.|+.+++..++....+. .....++  ++.+.++.......|+-.|+++.+....+
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s--~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLS--PDDRALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE---TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEe--cCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence            367789987766655   45788889999999887665432 3356666  77788777666778999999998766666


Q ss_pred             eCCCee-----EEEecCCCeEEEE----------------------ecCCeEEEEeCCCCccccccccCcccccceEEEe
Q psy12911        158 NLPERC-----YCADVDYPLAVVG----------------------TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAI  210 (356)
Q Consensus       158 ~~~~~~-----~~~~~~~~~~~~~----------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  210 (356)
                      ..+..-     ..+..++..++..                      -....|.-.|+.+++......   ...-+.-+.+
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~---~~~wlgH~~f  195 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE---DTDWLGHVQF  195 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE---ESS-EEEEEE
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe---cCccccCccc
Confidence            655421     1122222222111                      112244445555543222111   2234456777


Q ss_pred             ecCCCCCCCeEEEeec---CC-eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE-----cC
Q psy12911        211 FRDKKKQPAGYGLGSV---EG-RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV-----GS  281 (356)
Q Consensus       211 ~~~~~~~~~~~~~~~~---dg-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~-----~~  281 (356)
                      +|..   +..++.|-.   +. .-+||-++... .....+..+.. .        ..+.-=-|.|||..|.--     +.
T Consensus       196 sP~d---p~li~fCHEGpw~~Vd~RiW~i~~dg-~~~~~v~~~~~-~--------e~~gHEfw~~DG~~i~y~~~~~~~~  262 (386)
T PF14583_consen  196 SPTD---PTLIMFCHEGPWDLVDQRIWTINTDG-SNVKKVHRRME-G--------ESVGHEFWVPDGSTIWYDSYTPGGQ  262 (386)
T ss_dssp             ETTE---EEEEEEEE-S-TTTSS-SEEEEETTS----EESS---T-T--------EEEEEEEE-TTSS-EEEEEEETTT-
T ss_pred             CCCC---CCEEEEeccCCcceeceEEEEEEcCC-CcceeeecCCC-C--------cccccccccCCCCEEEEEeecCCCC
Confidence            7762   344444332   22 13677775432 22222222211 0        034445689999765532     23


Q ss_pred             CCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        282 EGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                      +..|.-+|..+++......  ..+...+.-++||+++|-=++|
T Consensus       263 ~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  263 DFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             -EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred             ceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence            5567778888875532221  1234566778999988765544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.28  E-value=0.061  Score=42.68  Aligned_cols=110  Identities=15%  Similarity=0.090  Sum_probs=74.5

Q ss_pred             cceeEEEEccCCCeEEEEcCCC--eEEEEEcCCCceeeecccCC--CeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC
Q psy12911         77 EPVLDVAWIDDGTKVFMAGCDK--TVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ  152 (356)
Q Consensus        77 ~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  152 (356)
                      .-...+.|..+|.++-+.+.-|  .|+.+|+.+++......-..  ---.++..  .+ ++....=.++...+||..+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d-~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GD-KLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TT-EEEEEESSSSEEEEEETTTTE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CC-EEEEEEecCCeEEEEccccce
Confidence            3456788877887777777755  79999999998765333222  23344543  33 444444567899999999999


Q ss_pred             ceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCC
Q psy12911        153 PIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEG  189 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  189 (356)
                      .+.++..+.....+..++..++.......|.++|..+
T Consensus       122 ~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~  158 (264)
T PF05096_consen  122 KIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPET  158 (264)
T ss_dssp             EEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT
T ss_pred             EEEEEecCCcceEEEcCCCEEEEECCccceEEECCcc
Confidence            9999988877777777788888877778888888654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079|consensus

Probab=97.27  E-value=0.02  Score=53.40  Aligned_cols=97  Identities=14%  Similarity=0.217  Sum_probs=71.3

Q ss_pred             CCCeEEEEcCCCeEEEEEcCCCce--eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---
Q psy12911         87 DGTKVFMAGCDKTVKCWDLASNQS--MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---  161 (356)
Q Consensus        87 ~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---  161 (356)
                      .+..++.|+..|.+...|+...-.  .+-....++|++++|+  .+|..++.|-.+|.|.+||+..++.++.+..+.   
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn--~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN--QDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec--CCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence            456788899899999988876422  2233456899999999  999999999999999999999999888887544   


Q ss_pred             -eeEEEecCC--CeEEEEecCCeEEEEeC
Q psy12911        162 -RCYCADVDY--PLAVVGTAGRGIVLYQL  187 (356)
Q Consensus       162 -~~~~~~~~~--~~~~~~~~d~~i~i~d~  187 (356)
                       .++.....+  ..++++...|.  +|.+
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence             233333333  35666666676  4444

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.26  E-value=0.0014  Score=36.70  Aligned_cols=31  Identities=23%  Similarity=0.564  Sum_probs=28.6

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEecc
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVE   62 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~   62 (356)
                      ...|.+++|+|..   ++||.|..+|.|.|+.++
T Consensus        11 ~~~v~~~~w~P~m---dLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTM---DLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCC---CEEEEEECCCeEEEEECC
Confidence            4579999999999   999999999999999984

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.25  E-value=0.068  Score=42.68  Aligned_cols=162  Identities=10%  Similarity=0.093  Sum_probs=108.3

Q ss_pred             eccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecc--cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC
Q psy12911         72 MQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ--HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR  149 (356)
Q Consensus        72 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  149 (356)
                      +.+-...|.++.|+|+.+.|++......-.|+=...|+.++...  .-.....|.+.  .++++.++--.++.+.++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi--g~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYI--GGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEe--cCCEEEEEehhcceEEEEEEc
Confidence            45556669999999999999999888888888777888876322  23345667887  888888877778888888876


Q ss_pred             CCCceEE-----EeCC--------CeeEEEecCCCeEEEEecCCeEEEEeCCCCcccccccc--Cc------ccccceEE
Q psy12911        150 TPQPIMT-----INLP--------ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE--SP------LKYQNRCI  208 (356)
Q Consensus       150 ~~~~~~~-----~~~~--------~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~------~~~~i~~~  208 (356)
                      ....+..     +...        -..++.++....++++-...-+.||.............  .+      .-..+.++
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            6533222     2211        13556666677888888888888888765432111111  00      11345666


Q ss_pred             EeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        209 AIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                      .+.+..   +.+++.+..++.+.-.+....
T Consensus       239 ~~~~~~---~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         239 EFNAIT---NSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eecCCC---CcEEEEecCCceEEEEecCCC
Confidence            676653   677888888888877777654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.17  E-value=0.17  Score=45.58  Aligned_cols=104  Identities=11%  Similarity=0.052  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCeEEEEEcCCCceeeecccCC--Cee----------EEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceE
Q psy12911         88 GTKVFMAGCDKTVKCWDLASNQSMQVAQHDA--PVK----------TCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIM  155 (356)
Q Consensus        88 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~v~----------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  155 (356)
                      +..|+.++.++.|.-.|..+|+.+-......  .+.          .+++    .+..++.++.|+.|.-.|.++++.+.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVW  144 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence            4577777788899999999998765322211  111          1222    23467778889999999999999887


Q ss_pred             EEeCCCee----E--EEecCCCeEEEEec------CCeEEEEeCCCCccccc
Q psy12911        156 TINLPERC----Y--CADVDYPLAVVGTA------GRGIVLYQLEGKPQEFK  195 (356)
Q Consensus       156 ~~~~~~~~----~--~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~  195 (356)
                      ........    +  .....+..++++..      +|.|..+|.++++....
T Consensus       145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             ecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence            76543210    0  11112345666543      68999999988865443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.16  E-value=0.13  Score=44.18  Aligned_cols=42  Identities=14%  Similarity=0.064  Sum_probs=36.7

Q ss_pred             ceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCcc
Q psy12911        263 AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDM  304 (356)
Q Consensus       263 ~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  304 (356)
                      .+.+++.+|.+++.|+...=|+|.++|+.++..++.+++..+
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd  350 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD  350 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence            478899999999998887789999999999998888887654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.11  Score=41.59  Aligned_cols=193  Identities=12%  Similarity=0.096  Sum_probs=121.2

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  108 (356)
                      .+-+..+.++.     ++...+..+.-++|.|+.+........+....+--.++..  .|++...+..|.-+.+.|+.+.
T Consensus        86 ~~l~~Dv~vse-----~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdp  158 (370)
T COG5276          86 RDLFADVRVSE-----EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDP  158 (370)
T ss_pred             hhhhheeEecc-----cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCC
Confidence            44566677765     4677777778899999988655443333323344444444  5888888887777888898876


Q ss_pred             ceeee----cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC---CceEEEeCCCeeEEEecCCCeEEEEecCCe
Q psy12911        109 QSMQV----AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP---QPIMTINLPERCYCADVDYPLAVVGTAGRG  181 (356)
Q Consensus       109 ~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  181 (356)
                      +.-.+    .........++.+    |++-..+..|+-+.+.|+...   ..+...+............++.+..-.+..
T Consensus       159 ssP~lagrya~~~~d~~~v~IS----Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg  234 (370)
T COG5276         159 SSPQLAGRYALPGGDTHDVAIS----GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG  234 (370)
T ss_pred             CCceeeeeeccCCCCceeEEEe----cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc
Confidence            54332    2233334566666    667777788999999999765   455666666677778888887777777777


Q ss_pred             EEEEeCCCCccccccccCccc--ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        182 IVLYQLEGKPQEFKKTESPLK--YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       182 i~i~d~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                      +.+-|..+...+...-.....  ..++.+..+      +++...+..+.-+.+-|....
T Consensus       235 vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs------~~~~Yvadga~gl~~idisnp  287 (370)
T COG5276         235 VLIVDVSGPSSPTVFGSYETSNPVSISTVPVS------GEYAYVADGAKGLPIIDISNP  287 (370)
T ss_pred             eEEEecCCCCCceEeeccccCCcccccceecc------cceeeeeccccCceeEeccCC
Confidence            888888776533222211111  122222332      345666666666666666543

>PHA03098 kelch-like protein; Provisional

Probab=97.03  E-value=0.22  Score=45.25  Aligned_cols=185  Identities=14%  Similarity=0.163  Sum_probs=90.4

Q ss_pred             CCCeEEEEcCCC------eEEEEEcCCCceeeecccC--CCeeEEEEEeCCCCCeEEEEECC-----CeEEEEeCCCCCc
Q psy12911         87 DGTKVFMAGCDK------TVKCWDLASNQSMQVAQHD--APVKTCHWIKAPNYTCLMTGSWD-----KTLKFWDLRTPQP  153 (356)
Q Consensus        87 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~  153 (356)
                      ++..++.|+.++      .+..||..+.+........  ..-.+++.   -++.+++.||.+     ..+..||..+++-
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~---~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV---FNNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE---ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            556666776532      5778898887765432211  11122222   456777888765     3477888877643


Q ss_pred             eEE--EeCCCe-eEEEecCCCeEEEEecC------CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe
Q psy12911        154 IMT--INLPER-CYCADVDYPLAVVGTAG------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG  224 (356)
Q Consensus       154 ~~~--~~~~~~-~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  224 (356)
                      ...  +..+.. .......+...+.|+.+      ..+..||+.++.-..... .+......++.. .+    +..++.|
T Consensus       371 ~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~----~~iyv~G  444 (534)
T PHA03098        371 REEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIY-HD----GKIYVIG  444 (534)
T ss_pred             eeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC-CCccccCceEEE-EC----CEEEEEC
Confidence            221  111111 11223344455555521      468889987653211111 011111122222 23    4566666


Q ss_pred             ecCC--------eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcC
Q psy12911        225 SVEG--------RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKD  291 (356)
Q Consensus       225 ~~dg--------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~  291 (356)
                      +.+.        .+.+||........+..+.....           ....+.+  ++++++.|+.+     ..|.+||..
T Consensus       445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-----------~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  511 (534)
T PHA03098        445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI-----------NASLCIF--NNKIYVVGGDKYEYYINEIEVYDDK  511 (534)
T ss_pred             CccCCCCCcccceEEEecCCCCceeeCCCCCcccc-----------cceEEEE--CCEEEEEcCCcCCcccceeEEEeCC
Confidence            6432        26677766554333322211111           1112222  66777777654     467888877


Q ss_pred             cc
Q psy12911        292 AR  293 (356)
Q Consensus       292 ~~  293 (356)
                      +.
T Consensus       512 ~~  513 (534)
T PHA03098        512 TN  513 (534)
T ss_pred             CC
Confidence            64

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.99  E-value=0.13  Score=41.00  Aligned_cols=101  Identities=10%  Similarity=0.110  Sum_probs=63.2

Q ss_pred             EEEecCCCCCceEEEEEeCCCe-EEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-----CeEEEEEcCC
Q psy12911         34 CMAFSPSTLPQYFLIAGSWDNN-VRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-----KTVKCWDLAS  107 (356)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~dg~-i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~  107 (356)
                      .++|+|..  +.-++.+-.-|+ ..++|...........-.....---.=.|||||.+|++.-.|     |.|-|||.+.
T Consensus        72 gi~~~p~~--~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          72 GIAFHPAL--PRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             CeecCCCC--cceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            56777765  456666666665 567887763322211111111111223699999999886543     7899999884


Q ss_pred             Ccee--eecccCCCeeEEEEEeCCCCCeEEEEE
Q psy12911        108 NQSM--QVAQHDAPVKTCHWIKAPNYTCLMTGS  138 (356)
Q Consensus       108 ~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~  138 (356)
                      +-..  .+..|.-.-..+.|.  +||+.++.+.
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm--~DGrtlvvan  180 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLM--ADGRTLVVAN  180 (366)
T ss_pred             ccceecccccCCcCcceeEEe--cCCcEEEEeC
Confidence            4221  255666667788888  9999988764

>PHA03098 kelch-like protein; Provisional

Probab=96.98  E-value=0.18  Score=45.77  Aligned_cols=184  Identities=11%  Similarity=0.065  Sum_probs=87.8

Q ss_pred             eEEEEEeCCC------eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-----CeEEEEEcCCCceeee
Q psy12911         45 YFLIAGSWDN------NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-----KTVKCWDLASNQSMQV  113 (356)
Q Consensus        45 ~~l~~~~~dg------~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~  113 (356)
                      .+++.|+.++      .+..||..++.......+.........+.  -+++..+.||.+     ..+..||..+++....
T Consensus       296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            6677776543      46777876643322222221111222222  256677777765     3577888887765432


Q ss_pred             cc--cCCCeeEEEEEeCCCCCeEEEEECC------CeEEEEeCCCCCceEEE--eCCCe-eEEEecCCCeEEEEecC---
Q psy12911        114 AQ--HDAPVKTCHWIKAPNYTCLMTGSWD------KTLKFWDLRTPQPIMTI--NLPER-CYCADVDYPLAVVGTAG---  179 (356)
Q Consensus       114 ~~--~~~~v~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~d---  179 (356)
                      ..  +...-.+++.   .++.+++.|+.+      ..+..||+.+.+-...-  ..+.. ..+....+...+.|+.+   
T Consensus       374 ~~lp~~r~~~~~~~---~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  450 (534)
T PHA03098        374 PPLIFPRYNPCVVN---VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYID  450 (534)
T ss_pred             CCcCcCCccceEEE---ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCC
Confidence            21  1111122222   456777777732      45888998776432211  11111 11222334444555432   


Q ss_pred             -----CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-----CeEEEEEeCCCC
Q psy12911        180 -----RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-----GRVAIQYVNPAN  239 (356)
Q Consensus       180 -----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~~  239 (356)
                           ..+.+||..++.-...... +......+++.. +    +..++.|+.+     ..+.+||.+...
T Consensus       451 ~~~~~~~v~~yd~~~~~W~~~~~~-~~~r~~~~~~~~-~----~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        451 NIKVYNIVESYNPVTNKWTELSSL-NFPRINASLCIF-N----NKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCcccceEEEecCCCCceeeCCCC-CcccccceEEEE-C----CEEEEEcCCcCCcccceeEEEeCCCCE
Confidence                 2388888877542111111 111111122222 3    4566777654     456777766553

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.97  E-value=0.2  Score=43.06  Aligned_cols=89  Identities=17%  Similarity=0.204  Sum_probs=58.3

Q ss_pred             EEEecCCCCCceEEEEEeCCCeEEE---EeccCCC---ceeeeeec---cCC--cceeEEEEcc-----------CCCeE
Q psy12911         34 CMAFSPSTLPQYFLIAGSWDNNVRC---WEVEPNG---KTIPKSMQ---GMS--EPVLDVAWID-----------DGTKV   91 (356)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~dg~i~v---w~~~~~~---~~~~~~~~---~~~--~~v~~~~~s~-----------~~~~l   91 (356)
                      +++.+|++   ++||.+..+..+.+   |+....+   ........   .+.  ..|+++.+-|           |...+
T Consensus         6 ~isls~~~---d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I   82 (415)
T PF14655_consen    6 SISLSPDG---DLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCI   82 (415)
T ss_pred             eEEecCCC---CEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEE
Confidence            56788999   99999987776665   6442211   11111111   121  4677776644           35688


Q ss_pred             EEEcCCCeEEEEEcCCCcee-eecccCCCeeEEEEE
Q psy12911         92 FMAGCDKTVKCWDLASNQSM-QVAQHDAPVKTCHWI  126 (356)
Q Consensus        92 ~~~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~  126 (356)
                      +.|..+|.|++|... |.++ ...-|..+|..+.+.
T Consensus        83 ~VG~ssG~vrfyte~-G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   83 AVGTSSGYVRFYTEN-GVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             EEEecccEEEEEecc-chHHHHHhcCccceEEEEec
Confidence            999999999999974 4444 355688888888875

>KOG4499|consensus

Probab=96.96  E-value=0.11  Score=39.95  Aligned_cols=115  Identities=14%  Similarity=0.080  Sum_probs=73.9

Q ss_pred             eEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC-----CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        206 RCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-----KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                      ..++|..+.   .....+-+.+-.|.-||.+..++     +.+..++..+...  ..     .--.++..-+|.+.++.-
T Consensus       161 Ngl~Wd~d~---K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e--~~-----~PDGm~ID~eG~L~Va~~  230 (310)
T KOG4499|consen  161 NGLAWDSDA---KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE--SL-----EPDGMTIDTEGNLYVATF  230 (310)
T ss_pred             ccccccccC---cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC--CC-----CCCcceEccCCcEEEEEe
Confidence            567777664   34556667777787788654433     2223332211100  00     122345566788888888


Q ss_pred             CCCeEEEEEcCcceecCCCCCCccceEEEEEC-CCCCEEEEEeccCCcCCC
Q psy12911        281 SEGTFSFWDKDARTKLKPSEAMDMSISTCALN-HNGQIFAYAVSYDWSKGH  330 (356)
Q Consensus       281 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~s~~d~~~~~  330 (356)
                      ..++|...|..+|+.+.+++-....|++++|- ++-..|.+....++....
T Consensus       231 ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~~~dp~  281 (310)
T KOG4499|consen  231 NGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAKFDDPV  281 (310)
T ss_pred             cCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhcccCch
Confidence            89999999999999999998888999999997 333455555555544443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.90  E-value=0.15  Score=40.56  Aligned_cols=183  Identities=15%  Similarity=0.209  Sum_probs=108.3

Q ss_pred             EecCCCCCceEEEEEeCC-----CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC--------------
Q psy12911         36 AFSPSTLPQYFLIAGSWD-----NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC--------------   96 (356)
Q Consensus        36 ~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--------------   96 (356)
                      .|||||   .+|...-.|     |.|-|||... +...+-.+..|.-.-..+.|.+||+.++.+..              
T Consensus       120 vfs~dG---~~LYATEndfd~~rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lN  195 (366)
T COG3490         120 VFSPDG---RLLYATENDFDPNRGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELN  195 (366)
T ss_pred             ccCCCC---cEEEeecCCCCCCCceEEEEeccc-ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccc
Confidence            489999   888776443     7899999985 55556778888888899999999998887642              


Q ss_pred             ----CCeEEEEEcCCCceee---ec--ccCCCeeEEEEEeCCCCCeEEEEECCCe-----EEEEeCCCCCceEEEeCCCe
Q psy12911         97 ----DKTVKCWDLASNQSMQ---VA--QHDAPVKTCHWIKAPNYTCLMTGSWDKT-----LKFWDLRTPQPIMTINLPER  162 (356)
Q Consensus        97 ----dg~i~vwd~~~~~~~~---~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~  162 (356)
                          .-++.+.|..+|+++.   +.  .+.-.|..++.-  +||..++.+-..|.     -.+=-...++.+.-+..+..
T Consensus       196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g--~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee  273 (366)
T COG3490         196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG--RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEE  273 (366)
T ss_pred             hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeC--CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHH
Confidence                1234445555555543   11  234457777776  77766555443331     11222234555555554432


Q ss_pred             ----------eEEEecCCCeEEEE-ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEE
Q psy12911        163 ----------CYCADVDYPLAVVG-TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVA  231 (356)
Q Consensus       163 ----------~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~  231 (356)
                                .++..-....++.. -..+...+||..++........      ..+.-+-+.    ..-+++.+.+|.+.
T Consensus       274 ~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l------~daaGva~~----~~gf~vssg~G~~~  343 (366)
T COG3490         274 QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL------PDAAGVAAA----KGGFAVSSGQGRII  343 (366)
T ss_pred             HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc------cccccceec----cCceEEecCCceEE
Confidence                      22333333444444 4456788999998753322111      111222222    34678888888888


Q ss_pred             EEE
Q psy12911        232 IQY  234 (356)
Q Consensus       232 i~~  234 (356)
                      ++.
T Consensus       344 ~~s  346 (366)
T COG3490         344 FYS  346 (366)
T ss_pred             ecc
Confidence            774

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=0.17  Score=40.43  Aligned_cols=132  Identities=11%  Similarity=0.058  Sum_probs=90.4

Q ss_pred             CcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee---ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC
Q psy12911         76 SEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ---VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ  152 (356)
Q Consensus        76 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  152 (356)
                      .+-+..+.++  +++.+.+..+.-+++.|+.+...-.   +....+...++..+    |++...+..|.-+.+.|+.+.+
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs----Gn~aYVadlddgfLivdvsdps  159 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS----GNYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec----CCEEEEeeccCcEEEEECCCCC
Confidence            3445566665  4577777788889999998766443   33333555665544    7888888867778889987753


Q ss_pred             ---ceEEEeCCCe-eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecC
Q psy12911        153 ---PIMTINLPER-CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRD  213 (356)
Q Consensus       153 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  213 (356)
                         ....+..+.. ...+..++++..++..|+-+.+.|+.....+...........+.++..+++
T Consensus       160 sP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn  224 (370)
T COG5276         160 SPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN  224 (370)
T ss_pred             CceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC
Confidence               3344444432 356777889999999999999999988765544443334446777777776

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.82  E-value=0.12  Score=42.76  Aligned_cols=133  Identities=11%  Similarity=0.150  Sum_probs=82.9

Q ss_pred             CeeEEEecCCCCCceEEEEEeC---------CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC-CCeE
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSW---------DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTV  100 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i  100 (356)
                      .-+.+...|+|   .+-++...         -..-.||-+...+ ...+.+..+-..-+.|+||||++.|+.+.. .+.|
T Consensus       112 r~ND~~v~pdG---~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g-~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i  187 (307)
T COG3386         112 RPNDGVVDPDG---RIWFGDMGYFDLGKSEERPTGSLYRVDPDG-GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRI  187 (307)
T ss_pred             CCCceeEcCCC---CEEEeCCCccccCccccCCcceEEEEcCCC-CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence            44566777777   44443322         0112455555322 233445555566788999999988877765 4788


Q ss_pred             EEEEcCC--Cce------eeecccCCCeeEEEEEeCCCCCeEEEEECCC-eEEEEeCCCCCceEEEeCC-CeeEEEecCC
Q psy12911        101 KCWDLAS--NQS------MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK-TLKFWDLRTPQPIMTINLP-ERCYCADVDY  170 (356)
Q Consensus       101 ~vwd~~~--~~~------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~  170 (356)
                      ..|++..  +..      +......+..-.++..  .+|.+.+++..+| .|.+|+.. ++.+..+..+ ..+.++.+.+
T Consensus       188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD--adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD--ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             EEEecCcccCccCCcceEEEccCCCCCCCceEEe--CCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence            8887762  111      1122344556667776  8887776555554 89999987 9999999988 5555555554

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.77  E-value=0.5  Score=44.46  Aligned_cols=114  Identities=12%  Similarity=0.066  Sum_probs=67.9

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeee-eccCCc------ceeEEEEcc----------------CCCeEEEEcCCCeEE
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKS-MQGMSE------PVLDVAWID----------------DGTKVFMAGCDKTVK  101 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~~------~v~~~~~s~----------------~~~~l~~~~~dg~i~  101 (356)
                      ..|+.++.++.|.-.|..++. .+-+. ......      ....+.+-.                .+..|+.++.|+.+.
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk-~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGK-EKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCc-EEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            577777888888888888743 22111 111000      112233311                334788888999999


Q ss_pred             EEEcCCCceeeecccCCCee-------------EEEEEeCCCCCeEEEEEC----------CCeEEEEeCCCCCceEEEe
Q psy12911        102 CWDLASNQSMQVAQHDAPVK-------------TCHWIKAPNYTCLMTGSW----------DKTLKFWDLRTPQPIMTIN  158 (356)
Q Consensus       102 vwd~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~  158 (356)
                      -.|.++|+.....+..+.|.             .+.-.|.-.+..++.|+.          +|.|+-+|.++|+.+..+.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            99999999876433333221             011111012345666642          6889999999999998877


Q ss_pred             C
Q psy12911        159 L  159 (356)
Q Consensus       159 ~  159 (356)
                      .
T Consensus       354 ~  354 (764)
T TIGR03074       354 P  354 (764)
T ss_pred             c
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA02790 Kelch-like protein; Provisional

Probab=96.75  E-value=0.22  Score=44.47  Aligned_cols=182  Identities=10%  Similarity=0.039  Sum_probs=88.2

Q ss_pred             CCCeEEEEcCC-----CeEEEEEcCCCceeeecccC--CCeeEEEEEeCCCCCeEEEEECC--CeEEEEeCCCCCceE--
Q psy12911         87 DGTKVFMAGCD-----KTVKCWDLASNQSMQVAQHD--APVKTCHWIKAPNYTCLMTGSWD--KTLKFWDLRTPQPIM--  155 (356)
Q Consensus        87 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~--  155 (356)
                      ++..+++|+.+     ..+..||..+++......-.  ..-.+++ .  -++.+.+.|+.+  ..+..||..+++-..  
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-P--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-E--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            44556667654     35778888877654432211  1112222 2  567777888754  357888876653222  


Q ss_pred             EEeCCCe-eEEEecCCCeEEEEecC---CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEE
Q psy12911        156 TINLPER-CYCADVDYPLAVVGTAG---RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVA  231 (356)
Q Consensus       156 ~~~~~~~-~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~  231 (356)
                      .+..+.. .......+...++|+.+   ..+..||.+++.-...... +....-.+++ .-+    +..++.|+   .+.
T Consensus       348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m-~~~r~~~~~~-~~~----~~IYv~GG---~~e  418 (480)
T PHA02790        348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST-YYPHYKSCAL-VFG----RRLFLVGR---NAE  418 (480)
T ss_pred             CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC-CCccccceEE-EEC----CEEEEECC---ceE
Confidence            1211111 22233444555556544   3467888876532111111 1111111222 222    45566663   467


Q ss_pred             EEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcc
Q psy12911        232 IQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDAR  293 (356)
Q Consensus       232 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~  293 (356)
                      +||.+......+..+...+.           ....+.+  +|++.+.|+.+     ..|..||..++
T Consensus       419 ~ydp~~~~W~~~~~m~~~r~-----------~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        419 FYCESSNTWTLIDDPIYPRD-----------NPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             EecCCCCcEeEcCCCCCCcc-----------ccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence            78776654433333322111           2222223  66778888754     34666766654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.75  E-value=0.28  Score=41.34  Aligned_cols=61  Identities=16%  Similarity=0.120  Sum_probs=40.1

Q ss_pred             ceEEEEEeC-------CCCEEEEEcCCCeEEEEEcCcceec----CCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        263 AVNGIVFHP-------VHGTLATVGSEGTFSFWDKDARTKL----KPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       263 ~i~~i~~sp-------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      .+..+.|-.       .|.++++.-..+.|....++.+..+    ..+.....++.++++.|||.+.++...
T Consensus       254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~  325 (331)
T PF07995_consen  254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDS  325 (331)
T ss_dssp             -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-T
T ss_pred             ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECC
Confidence            567777764       3457777776778888888744322    123344558999999999999988763

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.53  E-value=0.11  Score=46.89  Aligned_cols=112  Identities=16%  Similarity=0.337  Sum_probs=74.6

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEc--cCCCeEEEEcCCCeEEEEEcC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWI--DDGTKVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~vwd~~  106 (356)
                      -....-+.-+.-+   +..++-+....+.|||...+.......+ ...+.|.++.|.  |+++.+++.+..+.|.++.-.
T Consensus        29 i~~~~li~gss~~---k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   29 ISNPSLISGSSIK---KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             CCCcceEeecccC---cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence            3344455555554   4555545556899999987433332333 457899999996  589999999999999998542


Q ss_pred             C-----Cc-------eeeecccC-CCeeEEEEEeCCCCCeEEEEECCCeEEEEeC
Q psy12911        107 S-----NQ-------SMQVAQHD-APVKTCHWIKAPNYTCLMTGSWDKTLKFWDL  148 (356)
Q Consensus       107 ~-----~~-------~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~  148 (356)
                      .     ..       .+....++ .+|.+..|.  ++|.+++.++  +.+.|+|-
T Consensus       105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl--~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWL--KDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             chhhhcCCcccceeEEEEeecCCCCCccceeEe--cCCeEEEEeC--CEEEEECC
Confidence            1     11       11233444 689999999  8887665554  67888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.49  E-value=0.46  Score=40.67  Aligned_cols=187  Identities=14%  Similarity=0.111  Sum_probs=84.6

Q ss_pred             eEEEEEe-CCCeEEEEeccCCC--ceeeeeecc---CC----cceeEEEEccCCCeEEEEcC------CCeEEEEEcCCC
Q psy12911         45 YFLIAGS-WDNNVRCWEVEPNG--KTIPKSMQG---MS----EPVLDVAWIDDGTKVFMAGC------DKTVKCWDLASN  108 (356)
Q Consensus        45 ~~l~~~~-~dg~i~vw~~~~~~--~~~~~~~~~---~~----~~v~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~  108 (356)
                      ++|+..+ ..+.|.|.|+.+.-  ..+.+.+..   +.    ..-..+.--|+|+.++++-.      -|-+.+.|-++.
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf  167 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF  167 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence            6676666 67899999998533  223333321   11    12223334468888877532      256888887776


Q ss_pred             ceee-ecc---cCCCeeEEEEEeCCCCCeEEEEEC--------------------CCeEEEEeCCCCCceEEEeCCCe--
Q psy12911        109 QSMQ-VAQ---HDAPVKTCHWIKAPNYTCLMTGSW--------------------DKTLKFWDLRTPQPIMTINLPER--  162 (356)
Q Consensus       109 ~~~~-~~~---~~~~v~~~~~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~--  162 (356)
                      +... ...   ....-+..-|.  |..+.++|...                    ..++.+||+.+.+.++++.....  
T Consensus       168 ~v~g~We~~~~~~~~gYDfw~q--pr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  168 EVKGRWEKDRGPQPFGYDFWYQ--PRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             -EEEE--SB-TT------EEEE--TTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccceeccCCCCCCCCCCeEEc--CCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            6654 211   23345666777  77777777542                    35799999999999999998752  


Q ss_pred             -eEEEecCC----CeEEEEe-cCCeEEEEeC-CCCccccc---ccc---------Cc-------ccccceEEEeecCCCC
Q psy12911        163 -CYCADVDY----PLAVVGT-AGRGIVLYQL-EGKPQEFK---KTE---------SP-------LKYQNRCIAIFRDKKK  216 (356)
Q Consensus       163 -~~~~~~~~----~~~~~~~-~d~~i~i~d~-~~~~~~~~---~~~---------~~-------~~~~i~~~~~~~~~~~  216 (356)
                       .+.+.+..    ..-++++ -..+|..|-- +.+.-..+   .+.         ..       ...-++.|.++.|   
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD---  322 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD---  322 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT---
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC---
Confidence             33333322    2333332 3344444433 33221000   000         01       1345789999998   


Q ss_pred             CCCeE-EEeecCCeEEEEEeCC
Q psy12911        217 QPAGY-GLGSVEGRVAIQYVNP  237 (356)
Q Consensus       217 ~~~~~-~~~~~dg~i~i~~~~~  237 (356)
                       .++| ++.-..|.++.||+..
T Consensus       323 -DrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  323 -DRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             -S-EEEEEETTTTEEEEEE-SS
T ss_pred             -CCEEEEEcccCCcEEEEecCC
Confidence             4454 4555799999999954

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630|consensus

Probab=96.42  E-value=0.04  Score=51.96  Aligned_cols=131  Identities=8%  Similarity=0.057  Sum_probs=84.7

Q ss_pred             EecCCeEEEEeCCCCccccccc---------cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKT---------ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~  246 (356)
                      .+.+-.|..||++.-.......         .........++.|.|..   ....++...|+.|++..+.... .....+
T Consensus       120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v---p~n~av~l~dlsl~V~~~~~~~-~~v~s~  195 (1405)
T KOG3630|consen  120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV---PLNSAVDLSDLSLRVKSTKQLA-QNVTSF  195 (1405)
T ss_pred             ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc---cchhhhhccccchhhhhhhhhh-hhhccc
Confidence            3445588999998643222111         11122445778888874   4567788889988887665432 122222


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc--eecCCCCCC-ccceEEEEECCCCCEEEEEe
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR--TKLKPSEAM-DMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~-~~~v~~~~~s~~~~~l~~~s  322 (356)
                      +...            ..++++|+|.|+.++.|-..|++.-|...-.  ..+...... ...|.+|+|-..-.+|++=+
T Consensus       196 p~t~------------~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  196 PVTN------------SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             Cccc------------ceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            2222            6899999999999999999999999886522  222222222 36899999998888777643

>PRK10115 protease 2; Provisional

Probab=96.38  E-value=0.88  Score=42.62  Aligned_cols=108  Identities=12%  Similarity=0.071  Sum_probs=65.2

Q ss_pred             cceeEEEEccCCCeEEEEcC-----CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECC------CeEE
Q psy12911         77 EPVLDVAWIDDGTKVFMAGC-----DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWD------KTLK  144 (356)
Q Consensus        77 ~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~i~  144 (356)
                      -.+..+.|+|||++|+.+..     ...|++.|+.+++.+. ......  ..++|.  +|++.|+....+      ..|+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~--~D~~~~~y~~~~~~~~~~~~v~  202 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWA--NDSWTFYYVRKHPVTLLPYQVW  202 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEe--eCCCEEEEEEecCCCCCCCEEE
Confidence            45777899999998886543     3468899998887433 111211  558998  888776665442      3688


Q ss_pred             EEeCCCC--CceEEEeCCCe-e--EEE-ecCCCeEEEEec---CCeEEEEeCC
Q psy12911        145 FWDLRTP--QPIMTINLPER-C--YCA-DVDYPLAVVGTA---GRGIVLYQLE  188 (356)
Q Consensus       145 iwd~~~~--~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~---d~~i~i~d~~  188 (356)
                      .+++.++  +....+..... .  ... ..++..+++.+.   ++.+.+++..
T Consensus       203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            8888887  33344443221 1  112 224454444332   4578888853

>PHA02790 Kelch-like protein; Provisional

Probab=96.34  E-value=0.62  Score=41.63  Aligned_cols=140  Identities=14%  Similarity=0.075  Sum_probs=70.2

Q ss_pred             eEEEEEeCCC-----eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC--CeEEEEEcCCCceeeecccC
Q psy12911         45 YFLIAGSWDN-----NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD--KTVKCWDLASNQSMQVAQHD  117 (356)
Q Consensus        45 ~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~  117 (356)
                      .++++|+.++     .+..||..++.......+....... +++ .-++...+.|+.+  ..+..||..+++......-.
T Consensus       273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~  350 (480)
T PHA02790        273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL  350 (480)
T ss_pred             EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence            6777777543     4667887764333323332211112 222 2366666777753  45788888766554422211


Q ss_pred             CCe--eEEEEEeCCCCCeEEEEECCC---eEEEEeCCCCCceEE--EeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCC
Q psy12911        118 APV--KTCHWIKAPNYTCLMTGSWDK---TLKFWDLRTPQPIMT--INLPERCYCADVDYPLAVVGTAGRGIVLYQLEGK  190 (356)
Q Consensus       118 ~~v--~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  190 (356)
                      .+.  .+++.   -++.+.+.||.++   .+..||.++.+-...  ...+....+....++.+++.+  |.+.+||.+++
T Consensus       351 ~~r~~~~~~~---~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~  425 (480)
T PHA02790        351 KPRCNPAVAS---INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESSN  425 (480)
T ss_pred             CCCcccEEEE---ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCCC
Confidence            111  12222   5677778877653   477888876543221  111111122222334444333  35678888765


Q ss_pred             c
Q psy12911        191 P  191 (356)
Q Consensus       191 ~  191 (356)
                      .
T Consensus       426 ~  426 (480)
T PHA02790        426 T  426 (480)
T ss_pred             c
Confidence            3

>KOG1897|consensus

Probab=96.32  E-value=0.98  Score=42.56  Aligned_cols=249  Identities=11%  Similarity=0.064  Sum_probs=133.8

Q ss_pred             CCeeEEEecCCC--CCceEEEEEe---CCCeEEEEeccCCC-ceeeeeeccCCcceeEEE--Ecc--CCCeEEEEcCCCe
Q psy12911         30 DSISCMAFSPST--LPQYFLIAGS---WDNNVRCWEVEPNG-KTIPKSMQGMSEPVLDVA--WID--DGTKVFMAGCDKT   99 (356)
Q Consensus        30 ~~V~~~~~~~~~--~~~~~l~~~~---~dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~--~s~--~~~~l~~~~~dg~   99 (356)
                      ++|..++.-...  . +..+++++   .||++|+....-+= ......+.| -..++.+.  +.+  |. +|+.+-. +.
T Consensus       354 gPI~Dm~Vvd~d~q~-q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~-~e  429 (1096)
T KOG1897|consen  354 GPIVDMCVVDLDRQG-QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFI-SE  429 (1096)
T ss_pred             cceeeEEEEeccccC-CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEec-cc
Confidence            467776664322  1 24566654   58999998754311 112233444 45566666  443  33 5555443 33


Q ss_pred             EEEEEcCCC-ceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--eeEEEecCCCeEEEE
Q psy12911        100 VKCWDLASN-QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--RCYCADVDYPLAVVG  176 (356)
Q Consensus       100 i~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  176 (356)
                      -++..+... +.....+.......+..+. -.++.|+=... ..||+++-.  ..+..+..+.  .+.....+...++++
T Consensus       430 Trvl~i~~e~ee~~~~gf~~~~~Tif~S~-i~g~~lvQvTs-~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA  505 (1096)
T KOG1897|consen  430 TRVLNISEEVEETEDPGFSTDEQTIFCST-INGNQLVQVTS-NSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVVA  505 (1096)
T ss_pred             eEEEEEccceEEeccccccccCceEEEEc-cCCceEEEEec-ccEEEEcch--hhhhcccCCCceEEEEEeecceEEEEe
Confidence            444554432 2222334444445555542 34444444433 458888743  2333343333  233344445577788


Q ss_pred             ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCC--CCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKK--KQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                      +.++.+...++.... ............+.|+.++|-+.  .....+++|..+..+.+.-.....     .+..|.....
T Consensus       506 ~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~-----~~~~~~~l~~  579 (1096)
T KOG1897|consen  506 GGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL-----ILITHEQLSG  579 (1096)
T ss_pred             cCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc-----ceeeeeccCC
Confidence            888888877776654 22223335668899999998632  224578889888877666553321     1112221110


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEE--EcCccee
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFW--DKDARTK  295 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iw--d~~~~~~  295 (356)
                      ..   -...|.-..+-.|..+|.++..||.+..|  |..+|..
T Consensus       580 ~~---iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l  619 (1096)
T KOG1897|consen  580 EI---IPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL  619 (1096)
T ss_pred             Cc---cchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence            00   00145556666678899999999988666  4555543

>PRK10115 protease 2; Provisional

Probab=96.30  E-value=0.98  Score=42.32  Aligned_cols=238  Identities=12%  Similarity=0.128  Sum_probs=121.9

Q ss_pred             CeeEEEecCCCCCceEEEEEeC-C----CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC------Ce
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSW-D----NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD------KT   99 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~-d----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~   99 (356)
                      .+..+.++|++   ++|+.+.. +    ..|++.|+.++ ..+...+.+-   -..++|.+|++.|+....+      ..
T Consensus       128 ~l~~~~~Spdg---~~la~~~d~~G~E~~~l~v~d~~tg-~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~  200 (686)
T PRK10115        128 TLGGMAITPDN---TIMALAEDFLSRRQYGIRFRNLETG-NWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQ  200 (686)
T ss_pred             EEeEEEECCCC---CEEEEEecCCCcEEEEEEEEECCCC-CCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCE
Confidence            47778999999   87776633 2    35888888763 3222233221   1469999999877665432      46


Q ss_pred             EEEEEcCCC--ceee-ecccCCCeeEEEEEeCCCCCeEEEEEC---CCeEEEEeCC--CCCceEEEeCCC-eeEEEecCC
Q psy12911        100 VKCWDLASN--QSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSW---DKTLKFWDLR--TPQPIMTINLPE-RCYCADVDY  170 (356)
Q Consensus       100 i~vwd~~~~--~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~--~~~~~~~~~~~~-~~~~~~~~~  170 (356)
                      |+.+++.++  +-.. +.+......-..+. ..++++++..+.   ++.+.+++..  .++....+.... ..+.....+
T Consensus       201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~-s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (686)
T PRK10115        201 VWRHTIGTPASQDELVYEEKDDTFYVSLHK-TTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQ  279 (686)
T ss_pred             EEEEECCCChhHCeEEEeeCCCCEEEEEEE-cCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCC
Confidence            888888887  3222 22223333322233 147777665443   3468888843  333222222222 222223333


Q ss_pred             CeEEEEec----CCeEEEEeCCCCccccccccCc-ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911        171 PLAVVGTA----GRGIVLYQLEGKPQEFKKTESP-LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT  245 (356)
Q Consensus       171 ~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  245 (356)
                      ..+++.+.    ...|...++... .....+... ....+..+.+..+     .++++...+|.-+++-++... ..+..
T Consensus       280 ~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~~~-----~l~~~~~~~g~~~l~~~~~~~-~~~~~  352 (686)
T PRK10115        280 HRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTLFTD-----WLVVEERQRGLTSLRQINRKT-REVIG  352 (686)
T ss_pred             CEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEEECC-----EEEEEEEeCCEEEEEEEcCCC-CceEE
Confidence            44444333    234444455421 111222222 2345677777643     567777778887777775432 12222


Q ss_pred             ee-eecCCCCCCCcccccceEEEEEe--CCC-CEEEEEcC---CCeEEEEEcCcce
Q psy12911        246 FK-CHRSNGGAGGVQDIYAVNGIVFH--PVH-GTLATVGS---EGTFSFWDKDART  294 (356)
Q Consensus       246 ~~-~~~~~~~~~~~~~~~~i~~i~~s--p~~-~~l~s~~~---dg~i~iwd~~~~~  294 (356)
                      +. ....           .+..+.++  +++ .++++.+.   -+.+..+|+.+++
T Consensus       353 l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        353 IAFDDPA-----------YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             ecCCCCc-----------eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            22 1111           22333344  343 34444332   3678888887654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.27  E-value=0.43  Score=43.32  Aligned_cols=111  Identities=11%  Similarity=0.126  Sum_probs=72.8

Q ss_pred             ceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeee--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-----
Q psy12911         78 PVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-----  150 (356)
Q Consensus        78 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----  150 (356)
                      ...-+.-+.-++..++-+....+.|||.+.+.....  ....+.|.++.|...|+++.+++.|....|.+|--..     
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            334444444444444444556899999998875542  3458899999999889999999999999999985321     


Q ss_pred             ----CCceEEEeCC----CeeEEEecCCCeEEEEecCCeEEEEeCC
Q psy12911        151 ----PQPIMTINLP----ERCYCADVDYPLAVVGTAGRGIVLYQLE  188 (356)
Q Consensus       151 ----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~i~i~d~~  188 (356)
                          ...++.+...    ..+-...+..+..++.+.++.+.++|-.
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~  156 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKW  156 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCC
Confidence                1234444321    2344444555555555667788888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.00  E-value=1.3  Score=40.93  Aligned_cols=117  Identities=9%  Similarity=0.082  Sum_probs=77.4

Q ss_pred             CeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-------C-------------CceEEEeCCCeeEEEecC----CCeEE
Q psy12911        119 PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-------P-------------QPIMTINLPERCYCADVD----YPLAV  174 (356)
Q Consensus       119 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~-------------~~~~~~~~~~~~~~~~~~----~~~~~  174 (356)
                      .|+.|....-.+...|+.|..||.|.+|.+++       .             ++...+..+..++.++..    ..++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence            35555443225667899999999999997521       0             123444555667777765    45788


Q ss_pred             EEecCCeEEEEeCCCCc-cccccccCcccccceEEEeecCCCC-CC-CeEEEeecCCeEEEEEe
Q psy12911        175 VGTAGRGIVLYQLEGKP-QEFKKTESPLKYQNRCIAIFRDKKK-QP-AGYGLGSVEGRVAIQYV  235 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~-~~-~~~~~~~~dg~i~i~~~  235 (356)
                      +++....|.+|-+.... .........+...|.+|+|.++... .+ ..+++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888888888766532 1111113346788999999988422 12 37788889999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2280|consensus

Probab=95.96  E-value=1.3  Score=40.58  Aligned_cols=201  Identities=14%  Similarity=0.111  Sum_probs=99.4

Q ss_pred             CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC-----CCeeEEEecCCC
Q psy12911         97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL-----PERCYCADVDYP  171 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~  171 (356)
                      --.|+|+++......+..-....+..+.|+  .+ ..|++...+|++++|++- |+.+.....     ...+.......+
T Consensus        63 ~~~I~If~~sG~lL~~~~w~~~~lI~mgWs--~~-eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~  138 (829)
T KOG2280|consen   63 RPYIRIFNISGQLLGRILWKHGELIGMGWS--DD-EELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHN  138 (829)
T ss_pred             ceeEEEEeccccchHHHHhcCCCeeeeccc--CC-ceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecC
Confidence            356888887644333333333488899996  54 567778899999999974 333333211     112333333334


Q ss_pred             eEEEEecCCeEEEEeCCCCccccccccCcc-cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeec
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPL-KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHR  250 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  250 (356)
                      -+++-..+|.+.+-.-.......+....+. .....|-...+++....-.+.+.-..+. .++........ ...+....
T Consensus       139 GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~-~~~q~~~~~~q-~~~~~~~~  216 (829)
T KOG2280|consen  139 GVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGL-HICQVEESRVQ-LHALSWPN  216 (829)
T ss_pred             ceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhh-cccceeccccc-ccccCCCC
Confidence            455555555544433222211111111111 1122444444442110111111101110 11111111101 11111111


Q ss_pred             CCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC--CCccceEEEEECCCC
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE--AMDMSISTCALNHNG  315 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~  315 (356)
                                 ..+..+..||+.++|+-=..+|.|.+-+.+..+.+..+.  .|. +...++|.-+.
T Consensus       217 -----------~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd  271 (829)
T KOG2280|consen  217 -----------SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND  271 (829)
T ss_pred             -----------ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence                       158899999999999999999999999988777776665  222 22355555444

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.86  E-value=0.046  Score=29.63  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=28.0

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccC
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEP   63 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~   63 (356)
                      ++|.+++|+|.....++|+.+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4789999998772236888888889999999985

It contains a characteristic DLL sequence motif.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.74  E-value=0.83  Score=36.80  Aligned_cols=198  Identities=12%  Similarity=0.085  Sum_probs=119.3

Q ss_pred             cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----eeEEEecCCCeEEEEecCCeEEEEeCCC
Q psy12911        114 AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----RCYCADVDYPLAVVGTAGRGIVLYQLEG  189 (356)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~i~i~d~~~  189 (356)
                      .+....+.++.|+  |+.+.|++......-.++=...|+.++++....    ..+...-.+.+.++--.++.+.++.+..
T Consensus        82 ~g~~~nvS~LTyn--p~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          82 LGETANVSSLTYN--PDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             ccccccccceeeC--CCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            4556669999999  888888888888777777777899999887544    2333333444555556678888877765


Q ss_pred             Ccccccc-------ccCcc-cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCc-cc
Q psy12911        190 KPQEFKK-------TESPL-KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGV-QD  260 (356)
Q Consensus       190 ~~~~~~~-------~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  260 (356)
                      .......       ..... +.....++|.|.    ...+..+-...-+.||.++...    ..+..|......... -.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~----~~~l~~aKEr~P~~I~~~~~~~----~~l~~~~~~~~~~~~~~f  231 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPV----DHRLFVAKERNPIGIFEVTQSP----SSLSVHASLDPTADRDLF  231 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCC----CceEEEEEccCCcEEEEEecCC----cccccccccCcccccceE
Confidence            4221111       11111 445678999998    6788888888888888876332    111111111000000 00


Q ss_pred             ccceEEEEEeCC-CCEEEEEcCCCeEEEEEcCcceecCCCC------CCcc---ceEEEEECCCCCEEEEEe
Q psy12911        261 IYAVNGIVFHPV-HGTLATVGSEGTFSFWDKDARTKLKPSE------AMDM---SISTCALNHNGQIFAYAV  322 (356)
Q Consensus       261 ~~~i~~i~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~---~v~~~~~s~~~~~l~~~s  322 (356)
                      ...|.++.|.+. +.+|+-+.+++.+.-.|.. |+.+..+.      +-..   ..-.++..++|...+++=
T Consensus       232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE  302 (316)
T COG3204         232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE  302 (316)
T ss_pred             eeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence            014777888864 4677777778887777765 44333221      1111   234678888887666653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.66  E-value=0.24  Score=43.68  Aligned_cols=106  Identities=12%  Similarity=0.116  Sum_probs=62.5

Q ss_pred             CeEEEEecCCeEEEEeCCCCccccc--------cccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCC
Q psy12911        171 PLAVVGTAGRGIVLYQLEGKPQEFK--------KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKD  242 (356)
Q Consensus       171 ~~~~~~~~d~~i~i~d~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~  242 (356)
                      +.+++......|.+|.+........        .+..+..--.....|+|.    ...+++-+....-.+++........
T Consensus        73 paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk----~~iL~VLT~~dvSV~~sV~~d~srV  148 (671)
T PF15390_consen   73 PALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK----KAILTVLTARDVSVLPSVHCDSSRV  148 (671)
T ss_pred             CceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC----CceEEEEecCceeEeeeeeeCCceE
Confidence            4677777788889998863221111        111122223456788888    5666666655555566665443233


Q ss_pred             cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE-cCCCeEEEEEcCc
Q psy12911        243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV-GSEGTFSFWDKDA  292 (356)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~-~~dg~i~iwd~~~  292 (356)
                      ...++...            -|.|.+|.+||+.|+.+ +..=.-+|||-..
T Consensus       149 kaDi~~~G------------~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  149 KADIKTSG------------LIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEeccCCc------------eEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            33333322            69999999999766544 4444578898553

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.55  E-value=0.41  Score=41.54  Aligned_cols=147  Identities=10%  Similarity=0.037  Sum_probs=90.2

Q ss_pred             CCCCeEE-EEECCCeEEEEeCCCCCceEEEeCCCee-EEEecCC-------CeEEEEecCCeEEEEeCCCCccccccccC
Q psy12911        129 PNYTCLM-TGSWDKTLKFWDLRTPQPIMTINLPERC-YCADVDY-------PLAVVGTAGRGIVLYQLEGKPQEFKKTES  199 (356)
Q Consensus       129 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  199 (356)
                      .+..+|+ .|+....++--|++.|+.+.....+..+ +.+.+..       ..-++|-.+..|.-.|.+-......... 
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-  555 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-  555 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-
Confidence            3444444 3455567888899999999988877765 2333322       2456777788887777765442222211 


Q ss_pred             cccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE
Q psy12911        200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV  279 (356)
Q Consensus       200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~  279 (356)
                       .....+.-.|+........++++++..|.|++||--...  ....+++-..           .|..+..+.+|+++++.
T Consensus       556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r--AKtalP~lG~-----------aIk~idvta~Gk~ilaT  621 (776)
T COG5167         556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR--AKTALPGLGD-----------AIKHIDVTANGKHILAT  621 (776)
T ss_pred             -ehhccccccccccccccCceEEEecCCCceeeehhhcch--hhhcCccccc-----------ceeeeEeecCCcEEEEe
Confidence             122222333333322335689999999999999864331  1222333333           78999999999988877


Q ss_pred             cCCCeEEEEEcC
Q psy12911        280 GSEGTFSFWDKD  291 (356)
Q Consensus       280 ~~dg~i~iwd~~  291 (356)
                      |.. .+.+-|+.
T Consensus       622 Ck~-yllL~d~~  632 (776)
T COG5167         622 CKN-YLLLTDVP  632 (776)
T ss_pred             ecc-eEEEEecc
Confidence            754 56676653

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.47  E-value=0.076  Score=28.78  Aligned_cols=30  Identities=27%  Similarity=0.285  Sum_probs=26.0

Q ss_pred             ceEEEEEeCCC---CEEEEEcCCCeEEEEEcCc
Q psy12911        263 AVNGIVFHPVH---GTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       263 ~i~~i~~sp~~---~~l~s~~~dg~i~iwd~~~  292 (356)
                      .|.++.|||..   .+|+.+-.-|.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            68999999854   5888888889999999985

It contains a characteristic DLL sequence motif.

>KOG2377|consensus

Probab=95.38  E-value=1.1  Score=38.51  Aligned_cols=108  Identities=13%  Similarity=0.210  Sum_probs=78.4

Q ss_pred             ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        201 LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       201 ~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                      .+++|.++.|++|    ...+++--.+..|.+++.-....+.....++....         ..|....|+.. .-+|-..
T Consensus        65 d~G~I~SIkFSlD----nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~---------~~IlGF~W~~s-~e~A~i~  130 (657)
T KOG2377|consen   65 DKGEIKSIKFSLD----NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKN---------ANILGFCWTSS-TEIAFIT  130 (657)
T ss_pred             CCCceeEEEeccC----cceEEEEecCceEEEEecCCCchhhHHHHHhccCc---------ceeEEEEEecC-eeEEEEe
Confidence            3568999999999    78999999999999999865544444333332221         15889999865 5666665


Q ss_pred             CCCeEEEEEcCc-ceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        281 SEGTFSFWDKDA-RTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       281 ~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      ..| +.+|-... .+.++..+.|...|+--.|.++.+.+..+++
T Consensus       131 ~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  131 DQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             cCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            554 67776543 3446666778888999999999998888775

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.37  E-value=2.5  Score=39.70  Aligned_cols=85  Identities=16%  Similarity=0.247  Sum_probs=57.3

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccC-C--------C-c-eeeeee--------ccCCccee
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEP-N--------G-K-TIPKSM--------QGMSEPVL   80 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~-~--------~-~-~~~~~~--------~~~~~~v~   80 (356)
                      +.+.......-.|..+.++|+|   .+||..|..| |.|-.+.. .        + . ...+++        ..+...|.
T Consensus        75 q~L~~~~~~~f~v~~i~~n~~g---~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~  150 (717)
T PF10168_consen   75 QKLLPSNPPLFEVHQISLNPTG---SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIK  150 (717)
T ss_pred             ceeecCCCCceeEEEEEECCCC---CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEE
Confidence            3333334456689999999999   8888888765 44444432 0        1 1 111111        13456899


Q ss_pred             EEEEccC---CCeEEEEcCCCeEEEEEcCCC
Q psy12911         81 DVAWIDD---GTKVFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        81 ~~~~s~~---~~~l~~~~~dg~i~vwd~~~~  108 (356)
                      .+.|+|.   +..|+.-..|+++++||+...
T Consensus       151 qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  151 QVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            9999995   578988899999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.32  E-value=1.6  Score=37.19  Aligned_cols=197  Identities=11%  Similarity=0.113  Sum_probs=110.4

Q ss_pred             ecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEc----cCCCe--EEEEcC-C---CeEEEEEcC
Q psy12911         37 FSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWI----DDGTK--VFMAGC-D---KTVKCWDLA  106 (356)
Q Consensus        37 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~--l~~~~~-d---g~i~vwd~~  106 (356)
                      .+|......+++....++-+.+||++.  +.+ ..+.  .+.++.+..-    -+|+.  |+.++. +   .+|++|.+.
T Consensus        61 vnp~dp~kSlIigTdK~~GL~VYdL~G--k~l-q~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id  135 (381)
T PF02333_consen   61 VNPADPAKSLIIGTDKKGGLYVYDLDG--KEL-QSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRID  135 (381)
T ss_dssp             --SS-GGG-EEEEEETTTEEEEEETTS---EE-EEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred             cCCCCcccceEEEEeCCCCEEEEcCCC--cEE-Eeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEec
Confidence            344432337888888999999999976  333 3342  2344444332    13443  445443 2   579999775


Q ss_pred             --CCceeeecc-------cCCCeeEEEEEeCC-CCC-eEEEEECCCeEEEEeCC---CC----CceEEEeCCCeeEE--E
Q psy12911        107 --SNQSMQVAQ-------HDAPVKTCHWIKAP-NYT-CLMTGSWDKTLKFWDLR---TP----QPIMTINLPERCYC--A  166 (356)
Q Consensus       107 --~~~~~~~~~-------~~~~v~~~~~~~~~-~~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~~--~  166 (356)
                        ++.+..+..       ....++.+++-..+ ++. +++....+|.+..|.+.   .+    +.++.|.....+-.  .
T Consensus       136 ~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVV  215 (381)
T PF02333_consen  136 PDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVV  215 (381)
T ss_dssp             TTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEE
T ss_pred             CCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEE
Confidence              343322221       12346777775323 343 56677888988877764   22    35788887765544  4


Q ss_pred             ecCCCeEEEEecCCeEEEEeCCCCccc----c-ccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        167 DVDYPLAVVGTAGRGIVLYQLEGKPQE----F-KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       167 ~~~~~~~~~~~~d~~i~i~d~~~~~~~----~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                      +-....|+++-.+.-|.-|+.+.....    . ..........+..+++.......+.++++.-.++...+|+....
T Consensus       216 DDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  216 DDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             ETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             ecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            444569999999999999988743211    1 11122355678888887653322445556667788999988653

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1898|consensus

Probab=95.32  E-value=2.5  Score=40.39  Aligned_cols=174  Identities=13%  Similarity=0.090  Sum_probs=103.6

Q ss_pred             eEEEEEcCCCceeeecccCC-----CeeEEEEEeCCCCCeEEEEEC-----------CCeEEEEeCCC-CC---ceEEEe
Q psy12911         99 TVKCWDLASNQSMQVAQHDA-----PVKTCHWIKAPNYTCLMTGSW-----------DKTLKFWDLRT-PQ---PIMTIN  158 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~-~~---~~~~~~  158 (356)
                      .|++.|..+++.+....+..     .+..+.|+..++..+++++..           +|.++.|++-. ++   .+....
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            48889988888776444332     356667763233323443332           34466666533 33   344444


Q ss_pred             CCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        159 LPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                      .+..+.++.+.... +.++-...+++||+..++...+.........|..+.+.      +.++++|.....+.++.++..
T Consensus       934 ~~~~v~Ai~~f~~~-~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~------~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen  934 IPGPVGAICPFQGR-VLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY------GARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred             CCccceEEeccCCE-EEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec------ceEEEEeeccceEEEEEEecC
Confidence            55667778877774 44556689999999887654444333345566666665      458889988888888777654


Q ss_pred             CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                      . ..+..+-......         .|+++.+- |...+|.+..=|.+.+-.+
T Consensus      1007 ~-n~l~~fadD~~pR---------~Vt~~~~l-D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1007 D-NQLIVFADDPVPR---------HVTALELL-DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred             C-CeEEEEeCCCccc---------eeeEEEEe-cCCceeeccccCcEEEEEC
Confidence            3 3344443332211         46555554 4456777766677666654

>PLN02153 epithiospecifier protein

Probab=95.31  E-value=1.6  Score=37.11  Aligned_cols=104  Identities=12%  Similarity=0.087  Sum_probs=52.7

Q ss_pred             eEEEEEeCC-------CeEEEEeccCCCceeeeeecc-CCc---ceeEEEEccCCCeEEEEcCC-----CeEEEEEcCCC
Q psy12911         45 YFLIAGSWD-------NNVRCWEVEPNGKTIPKSMQG-MSE---PVLDVAWIDDGTKVFMAGCD-----KTVKCWDLASN  108 (356)
Q Consensus        45 ~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~~~-~~~---~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~  108 (356)
                      .+.+.|+.+       ..+.+||..+........... ...   ....+.+  +++.++.|+.+     ..+.+||+.+.
T Consensus        34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~  111 (341)
T PLN02153         34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKN  111 (341)
T ss_pred             EEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCC
Confidence            677777653       257788877643322211110 000   1112222  45666777653     35788998876


Q ss_pred             ceeeeccc------CCCeeEEEEEeCCCCCeEEEEECC-----------CeEEEEeCCCCC
Q psy12911        109 QSMQVAQH------DAPVKTCHWIKAPNYTCLMTGSWD-----------KTLKFWDLRTPQ  152 (356)
Q Consensus       109 ~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~  152 (356)
                      +...+...      .......+..  .++++++.|+.+           ..+.+||..+.+
T Consensus       112 ~W~~~~~~~~~~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~  170 (341)
T PLN02153        112 EWTFLTKLDEEGGPEARTFHSMAS--DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK  170 (341)
T ss_pred             EEEEeccCCCCCCCCCceeeEEEE--ECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence            65432211      1111112222  456677777754           247788887654

>KOG2377|consensus

Probab=95.31  E-value=1.5  Score=37.73  Aligned_cols=115  Identities=12%  Similarity=0.231  Sum_probs=77.2

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCcee--eeeeccCCcceeEEEEccCCCeEEEE
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTI--PKSMQGMSEPVLDVAWIDDGTKVFMA   94 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~   94 (356)
                      ++.-++..-...+++|.++.||+|.   +.||+--.+.+|.+++....+..+  ....+..+..|....|+.+ .-+|..
T Consensus        54 ndDVpiSfdm~d~G~I~SIkFSlDn---kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i  129 (657)
T KOG2377|consen   54 NDDVPISFDMDDKGEIKSIKFSLDN---KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFI  129 (657)
T ss_pred             CCCCCceeeecCCCceeEEEeccCc---ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEE
Confidence            3444444555567899999999999   999999999999999985433222  2233344556999999865 556665


Q ss_pred             cCCCeEEEEEcCCC--ceeeecccCCCeeEEEEEeCCCCCeEEEEE
Q psy12911         95 GCDKTVKCWDLASN--QSMQVAQHDAPVKTCHWIKAPNYTCLMTGS  138 (356)
Q Consensus        95 ~~dg~i~vwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  138 (356)
                      ...| +-+|.....  .......|.-.|.--.|.  ++.+.++-++
T Consensus       130 ~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc--~et~v~LL~t  172 (657)
T KOG2377|consen  130 TDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYC--PETAVILLST  172 (657)
T ss_pred             ecCC-eEEEEEchhhhhhhhhhhcccCccEEEEc--cccceEeeec
Confidence            5444 566655433  222366788889888888  6665544433

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.29  E-value=0.36  Score=42.68  Aligned_cols=116  Identities=12%  Similarity=0.061  Sum_probs=74.3

Q ss_pred             ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC---CCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE
Q psy12911        203 YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN---PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV  279 (356)
Q Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~  279 (356)
                      ..|..++|.|....+...+++......|.+|.+....   .+.+....++-.....-      --..+.|||....|+.-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pv------LpQGCVWHPk~~iL~VL  130 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPV------LPQGCVWHPKKAILTVL  130 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCccc------CCCcccccCCCceEEEE
Confidence            4678999999866555567777888899999985332   23333333322111000      12357899999888876


Q ss_pred             cCCCeEEEEEcCcc--eecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        280 GSEGTFSFWDKDAR--TKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       280 ~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      .....-.++++...  +....++ ..+.|.|.+|.+||+.|+.|-+..
T Consensus       131 T~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSs  177 (671)
T PF15390_consen  131 TARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSS  177 (671)
T ss_pred             ecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCe
Confidence            66554455665432  2223343 467899999999999999987753

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.12  E-value=0.27  Score=38.48  Aligned_cols=66  Identities=11%  Similarity=0.143  Sum_probs=48.2

Q ss_pred             EccCCCeEEEEcCCCeEEEEEcCCCceeee-------c--------ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeC
Q psy12911         84 WIDDGTKVFMAGCDKTVKCWDLASNQSMQV-------A--------QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL  148 (356)
Q Consensus        84 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------~--------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~  148 (356)
                      +..++++|++...+|.+++||+.+++.+..       .        .....|..+.+.  .+|.-+++-+ +|..+.|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt--~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLT--SNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEc--CCCCEEEEEe-CCCEEEecc
Confidence            345688999999999999999998875421       1        345667888887  7887777655 577888886


Q ss_pred             CCCC
Q psy12911        149 RTPQ  152 (356)
Q Consensus       149 ~~~~  152 (356)
                      .-+.
T Consensus        95 ~L~~   98 (219)
T PF07569_consen   95 DLGC   98 (219)
T ss_pred             ccce
Confidence            5443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=95.04  E-value=2.6  Score=38.10  Aligned_cols=248  Identities=11%  Similarity=0.135  Sum_probs=110.0

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccC-CcceeEEEEccCC-CeEEEEcC--CCeEEEEEcCCCceeeecccCCCe
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM-SEPVLDVAWIDDG-TKVFMAGC--DKTVKCWDLASNQSMQVAQHDAPV  120 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~v  120 (356)
                      ..++.+..+|.+....+...+..+....-+. .....++.+..+| .+|+.|+.  |+.+..|....-+.+.....-++|
T Consensus       223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~Pi  302 (504)
T PF10433_consen  223 DRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWGPI  302 (504)
T ss_dssp             SEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----SE
T ss_pred             CEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcCCc
Confidence            7888899999999988876442222222223 4566777777655 37777776  555555553333344445567899


Q ss_pred             eEEEEEeCC--CCC------eEEEEE---CCCeEEEEeCCCCCc-----eEEEeCC--CeeEEEecCC---CeEEEEecC
Q psy12911        121 KTCHWIKAP--NYT------CLMTGS---WDKTLKFWDLRTPQP-----IMTINLP--ERCYCADVDY---PLAVVGTAG  179 (356)
Q Consensus       121 ~~~~~~~~~--~~~------~l~~~~---~dg~i~iwd~~~~~~-----~~~~~~~--~~~~~~~~~~---~~~~~~~~d  179 (356)
                      .++++....  ...      .|++++   .+|.+++..  .|-.     +.....+  ..++.+....   .+++.+.. 
T Consensus       303 ~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~-  379 (504)
T PF10433_consen  303 VDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFP-  379 (504)
T ss_dssp             EEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEES-
T ss_pred             cceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcC-
Confidence            999886311  111      455554   467888874  3322     2222222  2445554432   34554444 


Q ss_pred             CeEEEEeCCC--CccccccccC-cccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911        180 RGIVLYQLEG--KPQEFKKTES-PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG  256 (356)
Q Consensus       180 ~~i~i~d~~~--~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (356)
                      ..-+++.+..  .......... ........+....-.   ...++=.+ ...|++.+....  +.........+     
T Consensus       380 ~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~---~~~ivQVt-~~~i~l~~~~~~--~~~~~w~~~~~-----  448 (504)
T PF10433_consen  380 NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG---DGRIVQVT-PKGIRLIDLEDG--KLTQEWKPPAG-----  448 (504)
T ss_dssp             SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET---TTEEEEEE-SSEEEEEESSST--SEEEEEE-TTS-----
T ss_pred             CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC---CCeEEEEe-cCeEEEEECCCC--eEEEEEeCCCC-----
Confidence            4445555531  1111100000 111111111111110   11222222 233566555332  22222211111     


Q ss_pred             CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC-----CCccceEEEEECC
Q psy12911        257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE-----AMDMSISTCALNH  313 (356)
Q Consensus       257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~  313 (356)
                           ..|.+.+..  +.+++.+..++.+..+.+..........     .....|.|+..+|
T Consensus       449 -----~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  449 -----SIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             --------SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             -----CeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence                 146555553  4566666678889999887654432111     1356788887765

...

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.04  E-value=0.79  Score=32.21  Aligned_cols=118  Identities=10%  Similarity=0.090  Sum_probs=75.4

Q ss_pred             eEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc------eeeeeeccCCcceeEEEEcc-----CCCeEEEEcCCCeEE
Q psy12911         33 SCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK------TIPKSMQGMSEPVLDVAWID-----DGTKVFMAGCDKTVK  101 (356)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~------~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~  101 (356)
                      ..-+|....   ..|++++.-|+|.|++......      ..+..+ .-...|++++-.+     +...|+.|+ ...+.
T Consensus         2 aiGkfDG~~---pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~ll   76 (136)
T PF14781_consen    2 AIGKFDGVH---PCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLL   76 (136)
T ss_pred             eEEEeCCCc---eeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEE
Confidence            344566666   6788888899999998764221      111223 2456777776544     234566665 56899


Q ss_pred             EEEcCCCceeeecccCCCeeEEEEEeCC--CCCeEEEEECCCeEEEEeCCCCCceEE
Q psy12911        102 CWDLASNQSMQVAQHDAPVKTCHWIKAP--NYTCLMTGSWDKTLKFWDLRTPQPIMT  156 (356)
Q Consensus       102 vwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~  156 (356)
                      .||+....-+..+.-...|+++.+-...  +..+++.|+ +-.|.-||..-.+...+
T Consensus        77 aYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   77 AYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             EEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence            9999988877777777888888874211  234455544 56788887654444433

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.04  E-value=1.1  Score=34.07  Aligned_cols=100  Identities=11%  Similarity=0.062  Sum_probs=67.7

Q ss_pred             CCCeEEEEcC--CCeEEEEEcCCCceeeecccC-CCeeE--EEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC
Q psy12911         87 DGTKVFMAGC--DKTVKCWDLASNQSMQVAQHD-APVKT--CHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE  161 (356)
Q Consensus        87 ~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~-~~v~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  161 (356)
                      +|.++.+.+.  ...|++||+.+++.+....-. ..+..  +.-.  .+. ...-.-.+|.-..+|.++.+.+..+..+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~-~y~LTw~egvaf~~d~~t~~~lg~~~y~G  131 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDY-FYQLTWKEGVAFKYDADTLEELGRFSYEG  131 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cce-EEEEEeccceeEEEChHHhhhhcccccCC
Confidence            4556666554  457999999998876532221 11111  1111  222 22223457888899999999999999999


Q ss_pred             eeEEEecCCCeEEEEecCCeEEEEeCCC
Q psy12911        162 RCYCADVDYPLAVVGTAGRGIVLYQLEG  189 (356)
Q Consensus       162 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~  189 (356)
                      ..+.+..++..++.+....++..-|..+
T Consensus       132 eGWgLt~d~~~LimsdGsatL~frdP~t  159 (262)
T COG3823         132 EGWGLTSDDKNLIMSDGSATLQFRDPKT  159 (262)
T ss_pred             cceeeecCCcceEeeCCceEEEecCHHH
Confidence            9899998888888888888888777654

>PLN02193 nitrile-specifier protein

Probab=95.00  E-value=2.5  Score=37.75  Aligned_cols=102  Identities=12%  Similarity=0.043  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCC-----CeEEEEEcCCCceeeeccc-----CCCeeEEEEEeCCCCCeEEEEECCC-----eEEEEeCCCC
Q psy12911         87 DGTKVFMAGCD-----KTVKCWDLASNQSMQVAQH-----DAPVKTCHWIKAPNYTCLMTGSWDK-----TLKFWDLRTP  151 (356)
Q Consensus        87 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~  151 (356)
                      ++...+.|+.+     ..+.++|+.+.+...+...     ...-.++. .  .++++++.|+.++     .+..||+.+.
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~--~~~~iYv~GG~~~~~~~~~~~~yd~~t~  304 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-A--DEENVYVFGGVSATARLKTLDSYNIVDK  304 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-E--ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence            45566666654     4688899888765443211     11111222 2  4456777777543     4677887765


Q ss_pred             CceEEEe-----C-CCeeEEEecCCCeEEEEecC----CeEEEEeCCCCc
Q psy12911        152 QPIMTIN-----L-PERCYCADVDYPLAVVGTAG----RGIVLYQLEGKP  191 (356)
Q Consensus       152 ~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~d----~~i~i~d~~~~~  191 (356)
                      +-...-.     . ..........+...+.++.+    ..+.+||+.+..
T Consensus       305 ~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~  354 (470)
T PLN02193        305 KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK  354 (470)
T ss_pred             EEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCE
Confidence            4221110     0 01111223345555555544    568899998764

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.98  E-value=1.2  Score=34.18  Aligned_cols=50  Identities=12%  Similarity=0.181  Sum_probs=37.5

Q ss_pred             EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        46 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      .|+.+...+.|.+|++...+..+...+. .-+.|..+.++..|++|++--.
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~   79 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEE   79 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEe
Confidence            3444355678999999965556656665 4488999999999999998643

>KOG3630|consensus

Probab=94.91  E-value=0.092  Score=49.69  Aligned_cols=113  Identities=12%  Similarity=0.149  Sum_probs=78.2

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      |++..++......-..++.|+|.-  +...++...|+.|+|..+..... ....+ .-...+++++|+|.|+.++.|-..
T Consensus       144 pl~~s~ts~ek~vf~~~~~wnP~v--p~n~av~l~dlsl~V~~~~~~~~-~v~s~-p~t~~~Tav~WSprGKQl~iG~nn  219 (1405)
T KOG3630|consen  144 PLKNSATSFEKPVFQLKNVWNPLV--PLNSAVDLSDLSLRVKSTKQLAQ-NVTSF-PVTNSQTAVLWSPRGKQLFIGRNN  219 (1405)
T ss_pred             ccccccchhccccccccccccCCc--cchhhhhccccchhhhhhhhhhh-hhccc-CcccceeeEEeccccceeeEecCC
Confidence            334444444445567789999876  45677888899999998865222 21222 245678999999999999999999


Q ss_pred             CeEEEEEcCCCceeeec----ccCCCeeEEEEEeCCCCCeEEE
Q psy12911         98 KTVKCWDLASNQSMQVA----QHDAPVKTCHWIKAPNYTCLMT  136 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~  136 (356)
                      |++.-|...-.....+.    .....|.++.|.  ....++++
T Consensus       220 Gt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl--~t~eflvv  260 (1405)
T KOG3630|consen  220 GTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWL--STQEFLVV  260 (1405)
T ss_pred             CeEEEeecccceeecccCCCcCCCcceeEEEEe--cceeEEEE
Confidence            99999986544222211    125789999998  66555554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.77  E-value=2  Score=35.51  Aligned_cols=223  Identities=16%  Similarity=0.127  Sum_probs=101.9

Q ss_pred             CCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee---eccc---CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeC
Q psy12911         75 MSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ---VAQH---DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL  148 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~---~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~  148 (356)
                      -..++.+|.|..+..-+++|. .+.| +-....|+.-.   ....   .-...++.|.  .+ ..+++ ++.+.| +.-.
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~--~~-~g~iv-G~~g~l-l~T~   87 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFD--GN-EGWIV-GEPGLL-LHTT   87 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEE--TT-EEEEE-EETTEE-EEES
T ss_pred             CCCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEec--CC-ceEEE-cCCceE-EEec
Confidence            456899999985555555554 5543 22333343222   1111   2246677775  43 34444 445543 3334


Q ss_pred             CCCCceEEEeC----CCeeEEE-ecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEE
Q psy12911        149 RTPQPIMTINL----PERCYCA-DVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL  223 (356)
Q Consensus       149 ~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  223 (356)
                      ..++.-..+..    +.....+ ......+.+++..|.|  |....+-.............+..+..+++    +.++++
T Consensus        88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~d----G~~vav  161 (302)
T PF14870_consen   88 DGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSD----GRYVAV  161 (302)
T ss_dssp             STTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--E--EEESSTTSSEEEEE-S----EEEEEE-TT----S-EEEE
T ss_pred             CCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCC----CcEEEE
Confidence            45554444432    2222222 2223334444444443  33333323333333344567788888888    676666


Q ss_pred             eecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE-cCcceecC----C
Q psy12911        224 GSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD-KDARTKLK----P  298 (356)
Q Consensus       224 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd-~~~~~~~~----~  298 (356)
                      +.......-|+-...      ....|.....       ..|..|.|.|++.+.+.+ ..|.|++=+ ....+...    .
T Consensus       162 s~~G~~~~s~~~G~~------~w~~~~r~~~-------~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~  227 (302)
T PF14870_consen  162 SSRGNFYSSWDPGQT------TWQPHNRNSS-------RRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIP  227 (302)
T ss_dssp             ETTSSEEEEE-TT-S------S-EEEE--SS-------S-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-T
T ss_pred             ECcccEEEEecCCCc------cceEEccCcc-------ceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCC
Confidence            655544445543221      1222222110       179999999998876655 788888887 23332222    2


Q ss_pred             CCCCccceEEEEECCCCCEEEEEecc
Q psy12911        299 SEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       299 ~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                      +....-.+.+++|.++++..|+|++.
T Consensus       228 ~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  228 IKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             TSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             cccCceeeEEEEecCCCCEEEEeCCc
Confidence            22223358999999999988888763

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.75  E-value=2.4  Score=36.41  Aligned_cols=59  Identities=12%  Similarity=0.158  Sum_probs=37.5

Q ss_pred             ceEEEEEeCCCCEEEEEcCC-------------------CeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911        263 AVNGIVFHPVHGTLATVGSE-------------------GTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       263 ~i~~i~~sp~~~~l~s~~~d-------------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                      ....++|.|||.+.++-+..                   |.|.-++..+++....-.++ .....++|+++|+++++-.
T Consensus       125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence            57889999999877655521                   44566666544332112222 2346899999999887644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.68  E-value=1  Score=31.70  Aligned_cols=109  Identities=11%  Similarity=0.103  Sum_probs=70.5

Q ss_pred             EEEEccCCCeEEEEcCCCeEEEEEcCCC--------ceeeecccCCCeeEEEEEe---CCCCCeEEEEECCCeEEEEeCC
Q psy12911         81 DVAWIDDGTKVFMAGCDKTVKCWDLASN--------QSMQVAQHDAPVKTCHWIK---APNYTCLMTGSWDKTLKFWDLR  149 (356)
Q Consensus        81 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~  149 (356)
                      .-.|......|++++.-|.|.|.+....        ..+++......|++++-.+   ..+...|+.|+ ...+..||+.
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            3456555567888888899999987643        2345666778888887653   23456677766 4679999999


Q ss_pred             CCCceEEEeCCCeeEEEec-----CCCeEEEEecCCeEEEEeCCCC
Q psy12911        150 TPQPIMTINLPERCYCADV-----DYPLAVVGTAGRGIVLYQLEGK  190 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~i~i~d~~~~  190 (356)
                      ....+..-+.+..+-++..     ...-++..+.+..|.-||....
T Consensus        82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~  127 (136)
T PF14781_consen   82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN  127 (136)
T ss_pred             cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence            8876655554443333222     1235566666677777776654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.61  E-value=2  Score=34.70  Aligned_cols=144  Identities=9%  Similarity=-0.011  Sum_probs=79.8

Q ss_pred             eEEEecCCCeEEEEe---cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe-CCC
Q psy12911        163 CYCADVDYPLAVVGT---AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV-NPA  238 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~-~~~  238 (356)
                      ...++.++..++...   ....+.++..........     ....+..-+|.++    +...+....+...+++.. ...
T Consensus        28 s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-----~g~~l~~PS~d~~----g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   28 SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-----TGGSLTRPSWDPD----GWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-----cCCccccccccCC----CCEEEEEcCCCceEEEEecCCC
Confidence            455666666555544   344555555443322111     2235666777777    556666665666666532 111


Q ss_pred             CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc---CCCeEEEEEcC---cc--e----ecCCCCCCccce
Q psy12911        239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG---SEGTFSFWDKD---AR--T----KLKPSEAMDMSI  306 (356)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~---~dg~i~iwd~~---~~--~----~~~~~~~~~~~v  306 (356)
                      ... ...+.....    .     ..|..+.+||||..+|...   .++.|.+=-+.   .+  .    .+.........+
T Consensus        99 ~~~-~~~v~~~~~----~-----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v  168 (253)
T PF10647_consen   99 TGE-PVEVDWPGL----R-----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDV  168 (253)
T ss_pred             cce-eEEeccccc----C-----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcc
Confidence            111 111111110    0     0599999999998776554   45777776543   22  1    111122234688


Q ss_pred             EEEEECCCCCEEEEEeccC
Q psy12911        307 STCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       307 ~~~~~s~~~~~l~~~s~~d  325 (356)
                      .+++|.+++.+++.+...+
T Consensus       169 ~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  169 TDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             eeeeecCCCEEEEEeCCCC
Confidence            9999999999988887655

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.61  E-value=2.1  Score=34.94  Aligned_cols=237  Identities=13%  Similarity=0.079  Sum_probs=122.9

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC-----Cceeeeeecc-----CCcceeEEEEccCCC-----------
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN-----GKTIPKSMQG-----MSEPVLDVAWIDDGT-----------   89 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-----~~~~~~~~~~-----~~~~v~~~~~s~~~~-----------   89 (356)
                      .-..|+++|.+   .+-++....+...+||....     ...++..+..     .....+.+.|+....           
T Consensus        24 N~WGia~~p~~---~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~  100 (336)
T TIGR03118        24 NAWGLSYRPGG---PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGP  100 (336)
T ss_pred             ccceeEecCCC---CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccc
Confidence            34689999998   77777777889999999721     2233334332     234677777774322           


Q ss_pred             -eEEEEcCCCeEEEEEcCCCce------eeecc-cCCCe-eEEEEEeCCCCCeEEEE-ECCCeEEEEeCCCCCceEE---
Q psy12911         90 -KVFMAGCDKTVKCWDLASNQS------MQVAQ-HDAPV-KTCHWIKAPNYTCLMTG-SWDKTLKFWDLRTPQPIMT---  156 (356)
Q Consensus        90 -~l~~~~~dg~i~vwd~~~~~~------~~~~~-~~~~v-~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~---  156 (356)
                       .++.+++||+|.-|...-+..      +.+.. ....| ..+++.....+.+|..+ -..++|.+||-. .+.+..   
T Consensus       101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~  179 (336)
T TIGR03118       101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGS  179 (336)
T ss_pred             eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCC
Confidence             356778899999998543322      11211 12333 34554422334444443 346778888732 222110   


Q ss_pred             EeCCCeeEEEecCCCeEEEEecCCeEEE-EeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911        157 INLPERCYCADVDYPLAVVGTAGRGIVL-YQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV  235 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  235 (356)
                      +..+.-.....+.  .+..  -.+.+++ |-.+                      .++    ...-+.+..-|.|-+||.
T Consensus       180 F~DP~iPagyAPF--nIqn--ig~~lyVtYA~q----------------------d~~----~~d~v~G~G~G~VdvFd~  229 (336)
T TIGR03118       180 FIDPALPAGYAPF--NVQN--LGGTLYVTYAQQ----------------------DAD----RNDEVAGAGLGYVNVFTL  229 (336)
T ss_pred             ccCCCCCCCCCCc--ceEE--ECCeEEEEEEec----------------------CCc----ccccccCCCcceEEEEcC
Confidence            1100000000000  0000  0011111 1110                      111    122334555677888877


Q ss_pred             CCCCCCCcceeeeecCCCCCCCcccccceEEEEEeC------CCCEEEEEcCCCeEEEEEcCcceecCCCCCCc------
Q psy12911        236 NPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP------VHGTLATVGSEGTFSFWDKDARTKLKPSEAMD------  303 (356)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------  303 (356)
                      +..   .++.+.....+         ..-+.|+..|      .|.+|+---.||+|..||..+++.+-.+....      
T Consensus       230 ~G~---l~~r~as~g~L---------NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i  297 (336)
T TIGR03118       230 NGQ---LLRRVASSGRL---------NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKV  297 (336)
T ss_pred             CCc---EEEEeccCCcc---------cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEe
Confidence            653   33333211110         0456677655      35777777779999999999998777665443      


Q ss_pred             cceEEEEECC
Q psy12911        304 MSISTCALNH  313 (356)
Q Consensus       304 ~~v~~~~~s~  313 (356)
                      ...+.|+|..
T Consensus       298 ~GLWgL~fGn  307 (336)
T TIGR03118       298 DGLWSLTFGN  307 (336)
T ss_pred             cCeEEeeeCC
Confidence            2467888876

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.59  E-value=2.7  Score=36.19  Aligned_cols=104  Identities=16%  Similarity=0.124  Sum_probs=67.8

Q ss_pred             CCCeEEEEcCCCeEEEEEcCCCceeeecccC---CCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-e
Q psy12911         87 DGTKVFMAGCDKTVKCWDLASNQSMQVAQHD---APVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-R  162 (356)
Q Consensus        87 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~  162 (356)
                      ++ .++.+..+|.|.-.|..+++.+......   ..+..-.+.  .+|+ ++.++.++.+..+|.++++.+...+... .
T Consensus        68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~--~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~  143 (370)
T COG1520          68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILG--SDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP  143 (370)
T ss_pred             CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEE--eCCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence            44 5666678899999999988865422222   233333343  4555 7778889999999998999998888777 1


Q ss_pred             -eEE-EecCCCeEEEEecCCeEEEEeCCCCcccc
Q psy12911        163 -CYC-ADVDYPLAVVGTAGRGIVLYQLEGKPQEF  194 (356)
Q Consensus       163 -~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  194 (356)
                       ... .......++..+.++.+...+..++....
T Consensus       144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W  177 (370)
T COG1520         144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKW  177 (370)
T ss_pred             EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEE
Confidence             111 11122344555577888888888775533

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=94.43  E-value=2.5  Score=35.15  Aligned_cols=231  Identities=9%  Similarity=0.070  Sum_probs=111.3

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-CCCeEEEEEcCCCce-------------
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWDLASNQS-------------  110 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~-------------  110 (356)
                      ++|+.|..+|...+. +........+.+  +...|+++...+.-+.|++-+ ....++++++..-..             
T Consensus        14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~   90 (302)
T smart00036       14 KWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR   90 (302)
T ss_pred             cEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence            589999999855554 543112332333  567899999998777666654 344599999843221             


Q ss_pred             ---eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC----CceEEE-----eCCCee--EE--EecCCCeEE
Q psy12911        111 ---MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP----QPIMTI-----NLPERC--YC--ADVDYPLAV  174 (356)
Q Consensus       111 ---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~-----~~~~~~--~~--~~~~~~~~~  174 (356)
                         .....+........... .....++++....+|.++.....    ...+.+     ..+...  ..  .++..+.+.
T Consensus        91 ~~~~~~~~~tkGc~~~~v~~-~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc  169 (302)
T smart00036       91 KNVLTKIPDTKGCHLCAVVN-GKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC  169 (302)
T ss_pred             ccceEeCCcCCceEEEEEEc-CCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence               11223443333333331 12223455555667777644322    122221     111111  11  122245777


Q ss_pred             EEecCCeEEEEeCCCC--c--c-ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee
Q psy12911        175 VGTAGRGIVLYQLEGK--P--Q-EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH  249 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~--~--~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  249 (356)
                      +|+..+...++++...  .  . ..............++...++     ..++.+..+.. .+.|...........+.-.
T Consensus       170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~-----~e~Llc~~~~~-v~Vn~~G~~~~r~~~l~w~  243 (302)
T smart00036      170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPR-----DEFLLCYDEFG-VFVNLYGKRRSRNPILHWE  243 (302)
T ss_pred             EEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECC-----CeEEEEECcEE-EEEeCCCCccccceEEEcC
Confidence            7777534444544321  0  0 000000000102223333333     24444444443 3334433111111222211


Q ss_pred             cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE  300 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  300 (356)
                      .            ...++++.  ..+|++-..+ .|.|+++.+++.++++.
T Consensus       244 ~------------~p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i~  279 (302)
T smart00036      244 F------------MPESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQELA  279 (302)
T ss_pred             C------------cccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEEe
Confidence            1            45677776  3677666554 59999999998887775

Unpublished observations.

>KOG2063|consensus

Probab=94.43  E-value=4.8  Score=38.40  Aligned_cols=65  Identities=11%  Similarity=0.188  Sum_probs=42.7

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeee---------ccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSM---------QGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS  110 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  110 (356)
                      +.+..|+.+|.+.+|.+...+.......         .-++.+|..+...+.-..+++- .|+.|.++++.+-+.
T Consensus        27 ~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~~  100 (877)
T KOG2063|consen   27 NHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELEP  100 (877)
T ss_pred             CEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCcccc
Confidence            7899999999999999877432111111         1135677777766655555554 467888888776554

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.40  E-value=4.5  Score=38.02  Aligned_cols=81  Identities=19%  Similarity=0.325  Sum_probs=54.8

Q ss_pred             cceeEEEEccCCCeEEEEcCCCeEEEEEcC----------CCce--e--e--------ecccCCCeeEEEEEeCC-CCCe
Q psy12911         77 EPVLDVAWIDDGTKVFMAGCDKTVKCWDLA----------SNQS--M--Q--------VAQHDAPVKTCHWIKAP-NYTC  133 (356)
Q Consensus        77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~----------~~~~--~--~--------~~~~~~~v~~~~~~~~~-~~~~  133 (356)
                      -.|..|.++|+|++|+..|..|.+ |-.+.          .++.  .  .        .......|..+.|+|.. ++..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            468899999999999998876644 33332          1111  1  0        11345678999999532 4678


Q ss_pred             EEEEECCCeEEEEeCCCCC-ceEEEe
Q psy12911        134 LMTGSWDKTLKFWDLRTPQ-PIMTIN  158 (356)
Q Consensus       134 l~~~~~dg~i~iwd~~~~~-~~~~~~  158 (356)
                      |+.-..|+++|+||+...+ +.+.+.
T Consensus       164 l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             EEEEecCCEEEEEecCCCCCCeEEEE
Confidence            8888999999999997643 444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1916|consensus

Probab=94.39  E-value=0.062  Score=49.51  Aligned_cols=131  Identities=18%  Similarity=0.261  Sum_probs=77.9

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEE-----------EccCCC
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVA-----------WIDDGT   89 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~-----------~s~~~~   89 (356)
                      .+.....-...+.-+.|.|--.+.-++..+-.++++++...+....   ..+.+|...+..++           .||||+
T Consensus       172 ~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~---~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt  248 (1283)
T KOG1916|consen  172 EVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR---SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT  248 (1283)
T ss_pred             EEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH---HHHHhcCCCcccHHHHhhchhhheeeCCCCc
Confidence            3344444455556666665432236788888899999988876322   44556877766654           488999


Q ss_pred             eEEEEcCCCeEEEEEcC-CCc----eee-ecccC-CCeeEEEEEeC-------CCCCeEEEEE-CCCeEEEEeCCCCCce
Q psy12911         90 KVFMAGCDKTVKCWDLA-SNQ----SMQ-VAQHD-APVKTCHWIKA-------PNYTCLMTGS-WDKTLKFWDLRTPQPI  154 (356)
Q Consensus        90 ~l~~~~~dg~i~vwd~~-~~~----~~~-~~~~~-~~v~~~~~~~~-------~~~~~l~~~~-~dg~i~iwd~~~~~~~  154 (356)
                      .++.++.||.++.|.+. +|+    ++. ...|+ .+-.|.-++..       +.-.++++++ .+..+++|.....+|+
T Consensus       249 v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  249 VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             EEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            99999999998888764 222    222 34454 22222223310       1112344443 3456899987766666

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.12  E-value=0.68  Score=36.28  Aligned_cols=79  Identities=8%  Similarity=-0.066  Sum_probs=49.5

Q ss_pred             EEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCcccccc------ccC------cccccceEEEeecCCCCCCCeEE
Q psy12911        155 MTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKK------TES------PLKYQNRCIAIFRDKKKQPAGYG  222 (356)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~------~~~------~~~~~i~~~~~~~~~~~~~~~~~  222 (356)
                      -.+..+..+..+...+.++++.+.+|.+++||+.+.+.....      ...      .....|..+.+..+    |.-++
T Consensus         7 P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~----G~PiV   82 (219)
T PF07569_consen    7 PPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN----GVPIV   82 (219)
T ss_pred             CcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC----CCEEE
Confidence            345556666777777888888888888888888876543322      110      23355666777655    44444


Q ss_pred             EeecCCeEEEEEeCCC
Q psy12911        223 LGSVEGRVAIQYVNPA  238 (356)
Q Consensus       223 ~~~~dg~i~i~~~~~~  238 (356)
                      +- .+|..+.|+.+..
T Consensus        83 ~l-sng~~y~y~~~L~   97 (219)
T PF07569_consen   83 TL-SNGDSYSYSPDLG   97 (219)
T ss_pred             EE-eCCCEEEeccccc
Confidence            43 4567777776654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2247|consensus

Probab=93.94  E-value=0.015  Score=49.56  Aligned_cols=141  Identities=13%  Similarity=0.159  Sum_probs=90.9

Q ss_pred             eeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecC--CC-eEEEEecCCeEEEEeCCCCcccccc
Q psy12911        120 VKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVD--YP-LAVVGTAGRGIVLYQLEGKPQEFKK  196 (356)
Q Consensus       120 v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~d~~i~i~d~~~~~~~~~~  196 (356)
                      .....|-  +++.-++.++.+..+..|| +.++.......+..++.+.++  ++ .++.+-..+.+.+||+.+.......
T Consensus        37 pi~~~w~--~e~~nlavaca~tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   37 PIIHRWR--PEGHNLAVACANTIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             cceeeEe--cCCCceehhhhhhHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence            3445566  6666688888888999999 567777777777766655554  44 4555677899999999875422221


Q ss_pred             ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEE
Q psy12911        197 TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTL  276 (356)
Q Consensus       197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l  276 (356)
                      .  .....-.-+.|++.    ...++.+...|.+.|++....  ........|..           .++++++.+.+..+
T Consensus       114 ~--gg~~s~sll~wsKg----~~el~ig~~~gn~viynhgts--R~iiv~Gkh~R-----------Rgtq~av~lEd~vi  174 (615)
T KOG2247|consen  114 S--GGTSSKSLLAWSKG----TPELVIGNNAGNIVIYNHGTS--RRIIVMGKHQR-----------RGTQIAVTLEDYVI  174 (615)
T ss_pred             c--cCcchHHHHhhccC----CccccccccccceEEEeccch--hhhhhhccccc-----------ceeEEEecccceee
Confidence            1  12222233666666    567888889999999987654  23333333544           78899998876443


Q ss_pred             EEEcCCC
Q psy12911        277 ATVGSEG  283 (356)
Q Consensus       277 ~s~~~dg  283 (356)
                       .++.|.
T Consensus       175 -l~dcd~  180 (615)
T KOG2247|consen  175 -LCDCDN  180 (615)
T ss_pred             -ecCcHH
Confidence             444343

>KOG1916|consensus

Probab=93.65  E-value=0.053  Score=49.90  Aligned_cols=121  Identities=11%  Similarity=0.044  Sum_probs=71.3

Q ss_pred             cccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEe---CCCCEE
Q psy12911        200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFH---PVHGTL  276 (356)
Q Consensus       200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s---p~~~~l  276 (356)
                      .+.+.+-.+.|-....  +...   -.-|.+.||+++.-.++....+..+.......      .+.-+.|.   ++.-++
T Consensus       130 gf~G~v~dl~fah~~~--pk~~---~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs------~~~~V~wcp~~~~~~~i  198 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKC--PKGR---RLVGELFVYDVDVLQGEIQPQLEVTPITPYGS------DPQLVSWCPIAVNKVYI  198 (1283)
T ss_pred             cCCCCcccccccccCC--hHHH---HHhhhhheeehHhhccccccceEEeecCcCCC------Ccceeeeccccccccee
Confidence            4455666666644321  1111   34467889998765555554444443211111      23344444   455777


Q ss_pred             EEEcCCCeEEEEEcCcceecCCCCCCccceEEEE-----------ECCCCCEEEEEeccCCcCCCcc
Q psy12911        277 ATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCA-----------LNHNGQIFAYAVSYDWSKGHEH  332 (356)
Q Consensus       277 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-----------~s~~~~~l~~~s~~d~~~~~~~  332 (356)
                      ..+-.++.|++...+.... ..+.+|..++.+++           .||||..+|.++.|+..+.+.+
T Consensus       199 c~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  199 CYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            7888888888877664332 34455766655443           6999999999999986655443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.53  E-value=1.7  Score=38.04  Aligned_cols=81  Identities=15%  Similarity=0.210  Sum_probs=53.7

Q ss_pred             CCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC---CcCCCccCCCCCCceeeecccccc
Q psy12911        273 HGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD---WSKGHEHNNPNKGNAIFLRPCFED  349 (356)
Q Consensus       273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d---~~~~~~~~~~~~~~~~~~~~~~~~  349 (356)
                      ..++|.++..|-|++||--..+....+.+....|..+..+.+|++|++.+..-   -+.... +-...+..-+++.++..
T Consensus       573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ik-~g~~aGr~GF~ksF~~~  651 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPIK-YGQPAGRDGFLKSFPAS  651 (776)
T ss_pred             CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecccc-cCCccccchhhhcCccc
Confidence            46999999999999999664455556677788999999999999988776421   000001 11123444566666654


Q ss_pred             cCCCC
Q psy12911        350 MKPRS  354 (356)
Q Consensus       350 ~~~~~  354 (356)
                      -+||+
T Consensus       652 ekpkp  656 (776)
T COG5167         652 EKPKP  656 (776)
T ss_pred             cCCCc
Confidence            45544

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=93.43  E-value=4.4  Score=34.49  Aligned_cols=52  Identities=17%  Similarity=0.243  Sum_probs=28.5

Q ss_pred             CCCeEEEEcCC-----------CeEEEEEcCCCceeeec-ccCCCeeEE-EE-EeCCCCCeEEEEECC
Q psy12911         87 DGTKVFMAGCD-----------KTVKCWDLASNQSMQVA-QHDAPVKTC-HW-IKAPNYTCLMTGSWD  140 (356)
Q Consensus        87 ~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~-~~~~~v~~~-~~-~~~~~~~~l~~~~~d  140 (356)
                      +++..+.|+.+           ..+..||..+.+..... ......... .. .  -++++.+.|+.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~--~~g~IYviGG~~  128 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSL--HNGQAYFTGGVN  128 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEE--eCCEEEEEcCcC
Confidence            56666777653           24778888877654432 111111111 11 2  567788888764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.19  E-value=3  Score=39.52  Aligned_cols=108  Identities=12%  Similarity=0.069  Sum_probs=70.1

Q ss_pred             CCeEEEEcCCCeEEEEEcCCCceeeecccCCC---------eeEEEEEe--------------CCCCCeEEEEECCCeEE
Q psy12911         88 GTKVFMAGCDKTVKCWDLASNQSMQVAQHDAP---------VKTCHWIK--------------APNYTCLMTGSWDKTLK  144 (356)
Q Consensus        88 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---------v~~~~~~~--------------~~~~~~l~~~~~dg~i~  144 (356)
                      +..|+.++.++.|.-.|..+|+.+-.......         ...+.+..              ...+..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            45788888889999999999987653222211         12233321              12345788889999999


Q ss_pred             EEeCCCCCceEEEeCCCeeE-------------E----EecCCCeEEEEec----------CCeEEEEeCCCCccccc
Q psy12911        145 FWDLRTPQPIMTINLPERCY-------------C----ADVDYPLAVVGTA----------GRGIVLYQLEGKPQEFK  195 (356)
Q Consensus       145 iwd~~~~~~~~~~~~~~~~~-------------~----~~~~~~~~~~~~~----------d~~i~i~d~~~~~~~~~  195 (356)
                      -.|.++++.+..+.....+.             .    ....++.+++++.          +|.|+-+|.++++....
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            99999999987765432210             0    1112346666643          68899999999875544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.13  E-value=3.8  Score=32.90  Aligned_cols=122  Identities=10%  Similarity=-0.013  Sum_probs=73.7

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCC--eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDN--NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  106 (356)
                      ..-...+.|..++   .++-+.+.-|  .|+.+|+.++.......+.. .----.++... ++...-.=.++...+||..
T Consensus        44 ~aFTQGL~~~~~g---~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~  118 (264)
T PF05096_consen   44 TAFTQGLEFLDDG---TLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILG-DKLYQLTWKEGTGFVYDPN  118 (264)
T ss_dssp             T-EEEEEEEEETT---EEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEET-TEEEEEESSSSEEEEEETT
T ss_pred             cccCccEEecCCC---EEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEEC-CEEEEEEecCCeEEEEccc
Confidence            3456678887777   7888877766  78889998843322223321 11122333332 2233333458999999999


Q ss_pred             CCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC
Q psy12911        107 SNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL  159 (356)
Q Consensus       107 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  159 (356)
                      +-+.+......+.=+.++    .+++.|+.......|+++|..+.+..+.+..
T Consensus       119 tl~~~~~~~y~~EGWGLt----~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V  167 (264)
T PF05096_consen  119 TLKKIGTFPYPGEGWGLT----SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV  167 (264)
T ss_dssp             TTEEEEEEE-SSS--EEE----ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred             cceEEEEEecCCcceEEE----cCCCEEEEECCccceEEECCcccceEEEEEE
Confidence            888777555566677777    4566677777778899999988877776653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.02  E-value=0.6  Score=42.58  Aligned_cols=68  Identities=19%  Similarity=0.282  Sum_probs=42.0

Q ss_pred             eEEEEEeCCCeEEEEeccC---CCceeeeee----------c-----------cCCcceeEEEEcc----CCCeEEEEcC
Q psy12911         45 YFLIAGSWDNNVRCWEVEP---NGKTIPKSM----------Q-----------GMSEPVLDVAWID----DGTKVFMAGC   96 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~---~~~~~~~~~----------~-----------~~~~~v~~~~~s~----~~~~l~~~~~   96 (356)
                      ..++.+..||.+.......   .+.......          .           .....+..+++..    +..+|++.+.
T Consensus       159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~  238 (547)
T PF11715_consen  159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR  238 (547)
T ss_dssp             SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence            6788888899888887764   221111110          0           0123455566665    6779999999


Q ss_pred             CCeEEEEEcCCCceee
Q psy12911         97 DKTVKCWDLASNQSMQ  112 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~  112 (356)
                      |+++++||+.+++++.
T Consensus       239 D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  239 DHTLRIWSLETGQCLA  254 (547)
T ss_dssp             TSEEEEEETTTTCEEE
T ss_pred             CCeEEEEECCCCeEEE
Confidence            9999999999999854

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.94  E-value=0.32  Score=26.21  Aligned_cols=40  Identities=15%  Similarity=0.015  Sum_probs=26.3

Q ss_pred             CCCCEEEEE-cCCCeEEEEEcCcceecCCCCCCccceEEEEE
Q psy12911        271 PVHGTLATV-GSEGTFSFWDKDARTKLKPSEAMDMSISTCAL  311 (356)
Q Consensus       271 p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  311 (356)
                      |++++|+++ ..++.|.++|..+++.+..+..- .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            567655554 45789999999888877766542 22344444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.90  E-value=2.6  Score=39.07  Aligned_cols=116  Identities=9%  Similarity=0.096  Sum_probs=76.9

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC----------Cc--------eeeeeeccCCcceeEEEEc--cCCCe
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN----------GK--------TIPKSMQGMSEPVLDVAWI--DDGTK   90 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~----------~~--------~~~~~~~~~~~~v~~~~~s--~~~~~   90 (356)
                      .|+-|....-| ....|+.+..||.|.+|.++.-          ..        .+...+. -...++++++.  ...++
T Consensus       102 tIN~i~v~~lg-~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rl  179 (717)
T PF08728_consen  102 TINFIKVGDLG-GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRL  179 (717)
T ss_pred             eeeEEEecccC-CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceE
Confidence            46666554433 2378999999999999976320          00        0111111 34578899998  77788


Q ss_pred             EEEEcCCCeEEEEEcCCC--ceee--ecccCCCeeEEEEEeCC---CCC-eEEEEECCCeEEEEeC
Q psy12911         91 VFMAGCDKTVKCWDLASN--QSMQ--VAQHDAPVKTCHWIKAP---NYT-CLMTGSWDKTLKFWDL  148 (356)
Q Consensus        91 l~~~~~dg~i~vwd~~~~--~~~~--~~~~~~~v~~~~~~~~~---~~~-~l~~~~~dg~i~iwd~  148 (356)
                      ||+++....|.||-....  +...  ...+...|-+|.|.+..   +|. .+++++-.|.+.+|++
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888888888888765542  2111  23467789999998533   122 7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.86  E-value=5.2  Score=33.80  Aligned_cols=26  Identities=12%  Similarity=0.203  Sum_probs=20.0

Q ss_pred             CeeEEEEEeCCCCCeEEEEECCCeEEEEe
Q psy12911        119 PVKTCHWIKAPNYTCLMTGSWDKTLKFWD  147 (356)
Q Consensus       119 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd  147 (356)
                      ..++|+|.  |++++++ +...|.|++++
T Consensus         3 ~P~~~a~~--pdG~l~v-~e~~G~i~~~~   28 (331)
T PF07995_consen    3 NPRSMAFL--PDGRLLV-AERSGRIWVVD   28 (331)
T ss_dssp             SEEEEEEE--TTSCEEE-EETTTEEEEEE
T ss_pred             CceEEEEe--CCCcEEE-EeCCceEEEEe
Confidence            35788898  8886655 46689999998

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.75  E-value=5  Score=33.25  Aligned_cols=167  Identities=11%  Similarity=0.056  Sum_probs=80.5

Q ss_pred             EEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEE
Q psy12911         58 CWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMT  136 (356)
Q Consensus        58 vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~  136 (356)
                      ||....++..-......-.+.+..+.-++||+++++++.-....-||.-...-.. ...-...|..+.|.  +++.+.+.
T Consensus       126 iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~--~~~~lw~~  203 (302)
T PF14870_consen  126 IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFS--PDGNLWML  203 (302)
T ss_dssp             EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE---TTS-EEEE
T ss_pred             EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceec--CCCCEEEE
Confidence            4555555544434445556789999999999999888776666677754333332 34457889999999  88776664


Q ss_pred             EECCCeEEEEeC-CCCCceEE--EeC---CCeeEEEecCC-CeEEEEecCCeEEEEeCCCCccc-cccccCcccccceEE
Q psy12911        137 GSWDKTLKFWDL-RTPQPIMT--INL---PERCYCADVDY-PLAVVGTAGRGIVLYQLEGKPQE-FKKTESPLKYQNRCI  208 (356)
Q Consensus       137 ~~~dg~i~iwd~-~~~~~~~~--~~~---~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~i~~~  208 (356)
                      + ..|.|+.=+. ...+....  ...   .-.++.+.+.. ..+.+++..|.+.. ..+.++.- ..............+
T Consensus       204 ~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i  281 (302)
T PF14870_consen  204 A-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRI  281 (302)
T ss_dssp             E-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EE
T ss_pred             e-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEE
Confidence            4 8888888872 11111111  111   11345555554 35555666664443 33333221 111122345567788


Q ss_pred             EeecCCCCCCCeEEEeecCCeEEEE
Q psy12911        209 AIFRDKKKQPAGYGLGSVEGRVAIQ  233 (356)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~dg~i~i~  233 (356)
                      .|.++    .. -.+-+.+|.+--|
T Consensus       282 ~f~~~----~~-gf~lG~~G~ll~~  301 (302)
T PF14870_consen  282 VFVNP----DK-GFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEET----TE-EEEE-STTEEEEE
T ss_pred             EEcCC----Cc-eEEECCCcEEEEe
Confidence            88765    33 4444566665444

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=92.68  E-value=8.2  Score=35.57  Aligned_cols=156  Identities=13%  Similarity=0.131  Sum_probs=90.4

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec-cCCc-ceeEEEEcc------CCCeEEEEcC-C--
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-GMSE-PVLDVAWID------DGTKVFMAGC-D--   97 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~-~v~~~~~s~------~~~~l~~~~~-d--   97 (356)
                      ++.|-.+.|.+++   +.+++.-.+|.|.+||.+.+.......+. .+.. -+.+ +|-+      ...++++.+. +  
T Consensus       129 ~~kvv~Ik~~~~~---~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~  204 (670)
T PF10395_consen  129 DDKVVGIKFSSDG---KIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNS  204 (670)
T ss_pred             ccceEEEEEecCC---CEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCC
Confidence            6789999999888   89999999999999999432211111111 1222 1122 2322      2335554443 2  


Q ss_pred             -CeEEEEEc--CCCceeeec---ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC-------CeeE
Q psy12911         98 -KTVKCWDL--ASNQSMQVA---QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP-------ERCY  164 (356)
Q Consensus        98 -g~i~vwd~--~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~  164 (356)
                       -..+++.+  +......+.   .+........|.. .+|.+..-  .+++|.+|++...+..+++..+       ...+
T Consensus       205 k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y-~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~v  281 (670)
T PF10395_consen  205 KLSYKLISLSNESSSIFELSSTILENFGLEDSKFCY-QFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLV  281 (670)
T ss_pred             cEEEEEEEeccCCcceEEeehheeccCCcccceEEE-eCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccce
Confidence             35677777  333333322   2222233333332 45544333  6789999999888888887765       2345


Q ss_pred             EEecCCCeEEEEecCCeEEEEeCCCCc
Q psy12911        165 CADVDYPLAVVGTAGRGIVLYQLEGKP  191 (356)
Q Consensus       165 ~~~~~~~~~~~~~~d~~i~i~d~~~~~  191 (356)
                      ++.+-...-+.-+.++.|++.|+.-..
T Consensus       282 Sl~~~s~nRvLLs~~nkIyLld~~~~s  308 (670)
T PF10395_consen  282 SLKPPSPNRVLLSVNNKIYLLDLKFES  308 (670)
T ss_pred             EeecCCCCeEEEEcCCEEEEEeehhhh
Confidence            555444444445667899999986543

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG2247|consensus

Probab=92.59  E-value=0.026  Score=48.19  Aligned_cols=133  Identities=10%  Similarity=0.012  Sum_probs=88.4

Q ss_pred             cCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911        168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK  247 (356)
Q Consensus       168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  247 (356)
                      +.+..+++++.+..+..||-....    .......+....++|..++   ...++.+-..+.+++||++......+. +.
T Consensus        44 ~e~~nlavaca~tiv~~YD~agq~----~le~n~tg~aldm~wDkeg---dvlavlAek~~piylwd~n~eytqqLE-~g  115 (615)
T KOG2247|consen   44 PEGHNLAVACANTIVIYYDKAGQV----ILELNPTGKALDMAWDKEG---DVLAVLAEKTGPIYLWDVNSEYTQQLE-SG  115 (615)
T ss_pred             cCCCceehhhhhhHHHhhhhhcce----ecccCCchhHhhhhhcccc---chhhhhhhcCCCeeechhhhhhHHHHh-cc
Confidence            334457778888888888865542    1111122333444554432   455677788899999999765322221 11


Q ss_pred             eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEE
Q psy12911        248 CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAY  320 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  320 (356)
                      +..            .-.-+.|++.+..++.+...|.+.|++..+.+.+...-.|..++++++|.+.+..+..
T Consensus       116 g~~------------s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~  176 (615)
T KOG2247|consen  116 GTS------------SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC  176 (615)
T ss_pred             Ccc------------hHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeec
Confidence            111            1222789998899999999999999999887777777668899999999998865543

>KOG1983|consensus

Probab=92.48  E-value=2.6  Score=41.26  Aligned_cols=106  Identities=12%  Similarity=0.188  Sum_probs=55.6

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCc----ceeEEEEccCCCeEEEEcCCCeEEEEEc
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE----PVLDVAWIDDGTKVFMAGCDKTVKCWDL  105 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~dg~i~vwd~  105 (356)
                      ..-..++|+|..   .++|.+..+|.|++|-....  ..   ...|..    .+..+.+-...........+..+.+|..
T Consensus        36 ~~~~~~afD~~q---~llai~t~tg~i~~yg~~~v--e~---~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~  107 (993)
T KOG1983|consen   36 STPSALAFDPTQ---GLLAIGTRTGAIKIYGQPGV--EF---VGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSI  107 (993)
T ss_pred             CCCcceeecccc---ceEEEEEecccEEEecccce--EE---Eeccccccchhhhheeeeecccccceeecccceeeecc
Confidence            355688899998   99999999999999976541  11   111221    2222222222223333444556666655


Q ss_pred             CCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC
Q psy12911        106 ASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT  150 (356)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  150 (356)
                      .......   ....+++..--  +--.. +-+ ..+.+++||..-
T Consensus       108 ~~~~~~~---~~~~~~~~~~~--~~~~~-~~g-~~~~~~~~~~~~  145 (993)
T KOG1983|consen  108 KIKTGVF---LKQEITSFVTD--PPPDW-LIG-ENGLVKVSDVLR  145 (993)
T ss_pred             cccceee---cCCcceeccCC--CCcch-hcc-cCceeeEeeech
Confidence            4322211   22233333322  11112 334 778888888643

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.35  E-value=5  Score=32.36  Aligned_cols=153  Identities=14%  Similarity=0.034  Sum_probs=78.7

Q ss_pred             CeeEEEEEeCCCCCeEEEEE---CCCeEEEEeCCCCCceEEEeCCCee--EEEecCCCeEEEEecCCeEEEEe-CCCCcc
Q psy12911        119 PVKTCHWIKAPNYTCLMTGS---WDKTLKFWDLRTPQPIMTINLPERC--YCADVDYPLAVVGTAGRGIVLYQ-LEGKPQ  192 (356)
Q Consensus       119 ~v~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~i~d-~~~~~~  192 (356)
                      .+.+.+++  +++..++...   ....++++.  .+............  -.++.++...++...+....++. ...+..
T Consensus        25 ~~~s~AvS--~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVS--PDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEEC--CCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            68889999  8888777665   233455554  33333332222222  23444444445545555555553 222222


Q ss_pred             ccccccCc-ccccceEEEeecCCCCCCCeEEEee---cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEE
Q psy12911        193 EFKKTESP-LKYQNRCIAIFRDKKKQPAGYGLGS---VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIV  268 (356)
Q Consensus       193 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~---~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  268 (356)
                      ........ ....|..+.++|+    +..++...   .++.+.+--+..........+.......    ......+..++
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpD----G~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~----~~~~~~v~~v~  172 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPD----GTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA----PPLLSDVTDVA  172 (253)
T ss_pred             eeEEecccccCCceEEEEECCC----CcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec----ccccCcceeee
Confidence            22222212 1228999999999    67776665   3566766655322111011111000000    00011689999


Q ss_pred             EeCCCCEEEEEcCCC
Q psy12911        269 FHPVHGTLATVGSEG  283 (356)
Q Consensus       269 ~sp~~~~l~s~~~dg  283 (356)
                      |.+++.+++.+...+
T Consensus       173 W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  173 WSDDSTLVVLGRSAG  187 (253)
T ss_pred             ecCCCEEEEEeCCCC
Confidence            999998877765544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=92.33  E-value=6.8  Score=33.83  Aligned_cols=52  Identities=17%  Similarity=0.226  Sum_probs=27.4

Q ss_pred             CCCeEEEEcCC-----------CeEEEEEcCCCceeeeccc-CCCe--eEEEEEeCCCCCeEEEEECC
Q psy12911         87 DGTKVFMAGCD-----------KTVKCWDLASNQSMQVAQH-DAPV--KTCHWIKAPNYTCLMTGSWD  140 (356)
Q Consensus        87 ~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~-~~~v--~~~~~~~~~~~~~l~~~~~d  140 (356)
                      ++...+.|+..           ..+..||..+.+....... ....  .+....  .++.+.+.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~--~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSL--HNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEe--eCCEEEEECCCC
Confidence            56666666643           2477888887665443211 1111  112221  456777777754

>PLN02193 nitrile-specifier protein

Probab=92.29  E-value=8.1  Score=34.58  Aligned_cols=145  Identities=12%  Similarity=0.020  Sum_probs=67.4

Q ss_pred             CCCeEEEEcCC-------CeEEEEEcCCCceeeecc---cCC--CeeEEEEEeCCCCCeEEEEECC-----CeEEEEeCC
Q psy12911         87 DGTKVFMAGCD-------KTVKCWDLASNQSMQVAQ---HDA--PVKTCHWIKAPNYTCLMTGSWD-----KTLKFWDLR  149 (356)
Q Consensus        87 ~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~---~~~--~v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  149 (356)
                      ++..++.|+.+       ..+.+||+.+.+......   ...  ........  -++.+++.|+.+     ..+..||+.
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~--~~~~lYvfGG~~~~~~~ndv~~yD~~  252 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVS--IGSTLYVFGGRDASRQYNGFYSFDTT  252 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEE--ECCEEEEECCCCCCCCCccEEEEECC
Confidence            34455666642       247788888765443211   111  11111122  455677777755     358889988


Q ss_pred             CCCceEEEeC---CC--e-eEEEecCCCeEEEEecC-----CeEEEEeCCCCccccccccC---cccccceEEEeecCCC
Q psy12911        150 TPQPIMTINL---PE--R-CYCADVDYPLAVVGTAG-----RGIVLYQLEGKPQEFKKTES---PLKYQNRCIAIFRDKK  215 (356)
Q Consensus       150 ~~~~~~~~~~---~~--~-~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~  215 (356)
                      +.+-...-..   +.  . ..+....+...+.|+.+     ..+..||+.+..-.......   ..... ..++.. +  
T Consensus       253 t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~~-~--  328 (470)
T PLN02193        253 TNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEVV-Q--  328 (470)
T ss_pred             CCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEEE-C--
Confidence            7643221111   11  1 11222333455555543     34677887765321111100   01111 122222 2  


Q ss_pred             CCCCeEEEeecC----CeEEEEEeCCCC
Q psy12911        216 KQPAGYGLGSVE----GRVAIQYVNPAN  239 (356)
Q Consensus       216 ~~~~~~~~~~~d----g~i~i~~~~~~~  239 (356)
                        +..++.++.+    ..+.+||.....
T Consensus       329 --gkiyviGG~~g~~~~dv~~yD~~t~~  354 (470)
T PLN02193        329 --GKVWVVYGFNGCEVDDVHYYDPVQDK  354 (470)
T ss_pred             --CcEEEEECCCCCccCceEEEECCCCE
Confidence              4566666654    457778776553

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.23  E-value=0.57  Score=42.72  Aligned_cols=80  Identities=13%  Similarity=0.089  Sum_probs=43.4

Q ss_pred             CCeEEEeecCCeEEEEEeCCC---CCCCcceeeeec----CCCCC------CCcccccceEEEEEeC----CCCEEEEEc
Q psy12911        218 PAGYGLGSVEGRVAIQYVNPA---NPKDNFTFKCHR----SNGGA------GGVQDIYAVNGIVFHP----VHGTLATVG  280 (356)
Q Consensus       218 ~~~~~~~~~dg~i~i~~~~~~---~~~~~~~~~~~~----~~~~~------~~~~~~~~i~~i~~sp----~~~~l~s~~  280 (356)
                      +..++++..||.+........   ............    .....      ...........+++++    +..+|++.+
T Consensus       158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~  237 (547)
T PF11715_consen  158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS  237 (547)
T ss_dssp             SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred             CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence            568889999999888877641   111111111100    00000      0001112455666666    668999999


Q ss_pred             CCCeEEEEEcCcceecC
Q psy12911        281 SEGTFSFWDKDARTKLK  297 (356)
Q Consensus       281 ~dg~i~iwd~~~~~~~~  297 (356)
                      .|+++|+||+.+++++.
T Consensus       238 ~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  238 RDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             TTSEEEEEETTTTCEEE
T ss_pred             CCCeEEEEECCCCeEEE
Confidence            99999999999998843

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2280|consensus

Probab=92.10  E-value=9.9  Score=35.22  Aligned_cols=235  Identities=10%  Similarity=0.163  Sum_probs=117.7

Q ss_pred             CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee----ecccCCCeeEEEEEeCC
Q psy12911         54 NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ----VAQHDAPVKTCHWIKAP  129 (356)
Q Consensus        54 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~v~~~~~~~~~  129 (356)
                      -.|+||++..  ..+.+.+-.|. .+-.+.|+.+. .|++...+|++++|++.......    .......|..+.+.  .
T Consensus        64 ~~I~If~~sG--~lL~~~~w~~~-~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f--~  137 (829)
T KOG2280|consen   64 PYIRIFNISG--QLLGRILWKHG-ELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFF--H  137 (829)
T ss_pred             eeEEEEeccc--cchHHHHhcCC-CeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEe--c
Confidence            4588888754  44433333344 78899999776 56666789999999986543322    12233456666666  5


Q ss_pred             CCCeEEEEECCCeEEEEeCCCCCceEEEeC------CCeeEEEecCCC---eEEEEecCCeEEEEeCCCCccccccccCc
Q psy12911        130 NYTCLMTGSWDKTLKFWDLRTPQPIMTINL------PERCYCADVDYP---LAVVGTAGRGIVLYQLEGKPQEFKKTESP  200 (356)
Q Consensus       130 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  200 (356)
                      +|-.++  ..+|.+.+-.-.....++++..      +..++.+-..+.   .++-....--..++............. .
T Consensus       138 ~GVavl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~-~  214 (829)
T KOG2280|consen  138 NGVAVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALS-W  214 (829)
T ss_pred             CceEEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccC-C
Confidence            663333  3445554443222112222221      112222222211   111111000011122222111111111 1


Q ss_pred             ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        201 LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       201 ~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                      ....+..++++|+    ...++.-...|.+.+-+.+..  +...++......          +--.++|..         
T Consensus       215 ~~~~~~ki~VS~n----~~~laLyt~~G~i~~vs~D~~--~~lce~~~~~~~----------~p~qm~Wcg---------  269 (829)
T KOG2280|consen  215 PNSSVVKISVSPN----RRFLALYTETGKIWVVSIDLS--QILCEFNCTDHD----------PPKQMAWCG---------  269 (829)
T ss_pred             CCceEEEEEEcCC----cceEEEEecCCcEEEEecchh--hhhhccCCCCCC----------chHhceeec---------
Confidence            2356778899998    789999999999998888766  334444422211          122455543         


Q ss_pred             CCCeEEEEEcC------cceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        281 SEGTFSFWDKD------ARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       281 ~dg~i~iwd~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      .|..+..|+..      .|..+.-+..++.  . +.--+||-.+++.+.-.
T Consensus       270 ndaVvl~~e~~l~lvgp~gd~V~f~yd~t~--~-l~~E~DGVRI~t~t~~E  317 (829)
T KOG2280|consen  270 NDAVVLSWEVNLMLVGPPGDSVQFYYDETA--I-LSAEVDGVRIITSTSHE  317 (829)
T ss_pred             CCceEEEEeeeEEEEcCCCCccccccCCCc--e-eeeccCeeEEeccchHH
Confidence            33344444422      2333333333332  2 66668888888877543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.94  E-value=7.3  Score=33.33  Aligned_cols=182  Identities=14%  Similarity=0.185  Sum_probs=99.2

Q ss_pred             CCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-e----eEEEecCCCe--EEEEe-cC---CeEEEEeCCCCccccccc
Q psy12911        129 PNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-R----CYCADVDYPL--AVVGT-AG---RGIVLYQLEGKPQEFKKT  197 (356)
Q Consensus       129 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~----~~~~~~~~~~--~~~~~-~d---~~i~i~d~~~~~~~~~~~  197 (356)
                      |...+++....++-+.+||+ .|+.++.+.... +    ...+...+..  +++++ .+   .+|++|.+......+..+
T Consensus        66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v  144 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV  144 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEET-TS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred             cccceEEEEeCCCCEEEEcC-CCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence            45567888888899999997 566777775332 1    1122333432  34443 32   579999886432222222


Q ss_pred             cC---c---ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC-CCC----CCcceeeeecCCCCCCCcccccceEE
Q psy12911        198 ES---P---LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP-ANP----KDNFTFKCHRSNGGAGGVQDIYAVNG  266 (356)
Q Consensus       198 ~~---~---~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (356)
                      ..   +   ....+..+++..+......+.++...+|.+..|.+.. ...    +.++.|....            .+..
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s------------Q~EG  212 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS------------QPEG  212 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-------------EEE
T ss_pred             CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC------------cceE
Confidence            11   1   1123556666543222134667778899998888842 222    2344444433            5888


Q ss_pred             EEEeCCCCEEEEEcCCCeEEEEEcCc-----ceecCCCCC--CccceEEEEEC--CCC-CEEEEEec
Q psy12911        267 IVFHPVHGTLATVGSEGTFSFWDKDA-----RTKLKPSEA--MDMSISTCALN--HNG-QIFAYAVS  323 (356)
Q Consensus       267 i~~sp~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~--~~~~v~~~~~s--~~~-~~l~~~s~  323 (356)
                      |.......+|..+-++.-|.-|+.+.     ++.+....+  ....|-.|++-  .++ .||+.++-
T Consensus       213 CVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ  279 (381)
T PF02333_consen  213 CVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ  279 (381)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred             EEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence            99988888999999998888887652     233322222  34566677664  444 46666553

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.76  E-value=7.1  Score=32.85  Aligned_cols=102  Identities=12%  Similarity=0.147  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCC-----CeEEEEEcCCCce----eeecccCCC--eeEEEEEeCCCCCeEEEEEC-----CCeEEEEeCCC
Q psy12911         87 DGTKVFMAGCD-----KTVKCWDLASNQS----MQVAQHDAP--VKTCHWIKAPNYTCLMTGSW-----DKTLKFWDLRT  150 (356)
Q Consensus        87 ~~~~l~~~~~d-----g~i~vwd~~~~~~----~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~  150 (356)
                      ++..++.|+.+     ..+..+|+.+.+.    .....-..+  -.+++.   -++.+.+.|+.     ...+..||+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~---~~~~iYv~GG~~~~~~~~~v~~yd~~~  148 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY---KDGTLYVGGGNRNGKPSNKSYLFNLET  148 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE---ECCEEEEEeCcCCCccCceEEEEcCCC
Confidence            45566667654     3577778776653    111111111  122222   34566777764     24688899887


Q ss_pred             CCceEE--EeCCC--eeEEEecCCCeEEEEecCC----eEEEEeCCCCc
Q psy12911        151 PQPIMT--INLPE--RCYCADVDYPLAVVGTAGR----GIVLYQLEGKP  191 (356)
Q Consensus       151 ~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~d~----~i~i~d~~~~~  191 (356)
                      .+-...  +....  ...+....+...+.|+.++    .+.+||+.++.
T Consensus       149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            653221  22111  1222344555666666543    35688887754

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.40  E-value=1.1  Score=24.03  Aligned_cols=28  Identities=32%  Similarity=0.515  Sum_probs=20.8

Q ss_pred             cCCCeEEEEc-CCCeEEEEEcCCCceeee
Q psy12911         86 DDGTKVFMAG-CDKTVKCWDLASNQSMQV  113 (356)
Q Consensus        86 ~~~~~l~~~~-~dg~i~vwd~~~~~~~~~  113 (356)
                      |++++|+++. .+++|.++|..+++.+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~   29 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIAT   29 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            5677676655 478999999988876653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG3616|consensus

Probab=91.32  E-value=0.64  Score=42.43  Aligned_cols=78  Identities=9%  Similarity=0.049  Sum_probs=51.6

Q ss_pred             eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCC
Q psy12911        110 SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEG  189 (356)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  189 (356)
                      +.+.......++++.-+  |.++.++.+..||.|++|+....+..+..........+.+.+.-+++.+.|..+.-|.-++
T Consensus         7 ~s~~~k~~e~~~aiqsh--p~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~dg   84 (1636)
T KOG3616|consen    7 CSRDPKEDEFTTAIQSH--PGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWKEDG   84 (1636)
T ss_pred             ccCCccccceeeeeeec--CCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheeeccC
Confidence            33344455667778777  9999999999999999999866544222222222233334445677788888887776554

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.01  E-value=0.41  Score=25.37  Aligned_cols=30  Identities=13%  Similarity=0.117  Sum_probs=0.0

Q ss_pred             cCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        296 LKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       296 ~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +..+......-...+|||||+.|+.++..+
T Consensus         1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~   30 (39)
T PF07676_consen    1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRN   30 (39)
T ss_dssp             -EEES-SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred             CcCcccCCccccCEEEecCCCEEEEEecCC

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG4460|consensus

Probab=90.97  E-value=5.1  Score=35.33  Aligned_cols=77  Identities=16%  Similarity=0.243  Sum_probs=49.5

Q ss_pred             ceeEEEEccCCCeEEEEcCCCeEEEEE---------cCCCcee----------ee--cccCCCeeEEEEEeCC-CCCeEE
Q psy12911         78 PVLDVAWIDDGTKVFMAGCDKTVKCWD---------LASNQSM----------QV--AQHDAPVKTCHWIKAP-NYTCLM  135 (356)
Q Consensus        78 ~v~~~~~s~~~~~l~~~~~dg~i~vwd---------~~~~~~~----------~~--~~~~~~v~~~~~~~~~-~~~~l~  135 (356)
                      .|..+..++.|..++-.+.+|.+.++=         ++.++..          ++  ....-.+..++|+|+. ....|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            567778899999999988898766543         1223211          01  1122346778899533 124566


Q ss_pred             EEECCCeEEEEeCCCCCce
Q psy12911        136 TGSWDKTLKFWDLRTPQPI  154 (356)
Q Consensus       136 ~~~~dg~i~iwd~~~~~~~  154 (356)
                      .-+.|..||+||+.....+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            6778999999998765544

>KOG1896|consensus

Probab=90.41  E-value=12  Score=36.76  Aligned_cols=159  Identities=12%  Similarity=0.187  Sum_probs=0.0

Q ss_pred             eEEEEcC---------CCeEEEEEcCCC-------------ceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEe
Q psy12911         90 KVFMAGC---------DKTVKCWDLASN-------------QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD  147 (356)
Q Consensus        90 ~l~~~~~---------dg~i~vwd~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd  147 (356)
                      +|++|..         .|.+.++|+-.-             +.+...+..++|..++=   -+|.++.+-+  .+|.+|+
T Consensus      1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce---V~G~l~~~~G--qKI~v~~ 1122 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE---VRGHLLSSQG--QKIIVRK 1122 (1366)
T ss_pred             eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE---eccEEEEccC--cEEEEEE


Q ss_pred             C-CCCC--ceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCccc-ccceEEEeecCCCCCCCeEEE
Q psy12911        148 L-RTPQ--PIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLK-YQNRCIAIFRDKKKQPAGYGL  223 (356)
Q Consensus       148 ~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~  223 (356)
                      + +...  .+.-+..+--+..+..-.++++.|.--..|.+.-................ -.+.++.|.-++.  .-.+++
T Consensus      1123 l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~--~L~flv 1200 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGS--NLSFLV 1200 (1366)
T ss_pred             eccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCC--eeEEEE


Q ss_pred             eecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEe
Q psy12911        224 GSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFH  270 (356)
Q Consensus       224 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s  270 (356)
                      +..+++|++|-+..   +....+.+.+            -+.+..|+
T Consensus      1201 sDa~rNi~vy~Y~P---e~~eS~~G~R------------Lv~radfh 1232 (1366)
T KOG1896|consen 1201 SDADRNIHVYMYAP---ENIESLSGQR------------LVRRADFH 1232 (1366)
T ss_pred             EcCCCcEEEEEeCC---CCccccCcce------------eeeeeeeE

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.38  E-value=7.5  Score=31.85  Aligned_cols=93  Identities=13%  Similarity=0.221  Sum_probs=57.5

Q ss_pred             CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc------CCCeEEEEEcCCCceeeecc-----cCCCee
Q psy12911         53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG------CDKTVKCWDLASNQSMQVAQ-----HDAPVK  121 (356)
Q Consensus        53 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~-----~~~~v~  121 (356)
                      -..|.+||.....  -...-.+-.+.|+++.|..+.+.++.|.      ....+..||..+.....+..     -.++|.
T Consensus        15 C~~lC~yd~~~~q--W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   15 CPGLCLYDTDNSQ--WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCEEEEEECCCCE--eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence            3469999987732  2222334568999999986666666654      34578899998877655444     247888


Q ss_pred             EEEEEeCCCCCeEE-EEE-CC--CeEEEEeC
Q psy12911        122 TCHWIKAPNYTCLM-TGS-WD--KTLKFWDL  148 (356)
Q Consensus       122 ~~~~~~~~~~~~l~-~~~-~d--g~i~iwd~  148 (356)
                      .+.+.. .++..+. .|. .+  ..|..||-
T Consensus        93 a~~~~~-~d~~~~~~aG~~~~g~~~l~~~dG  122 (281)
T PF12768_consen   93 ALTFIS-NDGSNFWVAGRSANGSTFLMKYDG  122 (281)
T ss_pred             EEEeec-cCCceEEEeceecCCCceEEEEcC
Confidence            887752 3443343 333 22  33566653

>KOG1900|consensus

Probab=90.27  E-value=17  Score=36.08  Aligned_cols=154  Identities=13%  Similarity=0.175  Sum_probs=83.7

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEE--------ccCCCeEEEEcCCCe
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAW--------IDDGTKVFMAGCDKT   99 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~--------s~~~~~l~~~~~dg~   99 (356)
                      |...=+.+-+-|.-   ..... +.|..+.+|+.++++..  ..+.+-+..|..+..        .|.=++++..+.--.
T Consensus        77 ~~~~~~~mGiFpeI---~RaWi-TiDn~L~lWny~~~~e~--~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~e  150 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEI---GRAWI-TIDNNLFLWNYESDNEL--AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVE  150 (1311)
T ss_pred             Ccceeeeeccchhh---cceEE-EeCCeEEEEEcCCCCcc--ccccchhhhheeeeeecCCCCcchhhhheeEEecccce
Confidence            33334444445543   33333 34889999999984332  455556666666654        333345555555566


Q ss_pred             EEEEEcCC----Cceeeec------ccCCCeeEEEEEeCCCCCeEEEEECCCeEEE--EeCCCC---Cce----------
Q psy12911        100 VKCWDLAS----NQSMQVA------QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF--WDLRTP---QPI----------  154 (356)
Q Consensus       100 i~vwd~~~----~~~~~~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i--wd~~~~---~~~----------  154 (356)
                      |.++-+.-    +..-.+.      .....|+++...  .+|+.+++| .||.|+-  |....+   +.-          
T Consensus       151 i~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t--~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~l  227 (1311)
T KOG1900|consen  151 IVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYT--ENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVL  227 (1311)
T ss_pred             EEEEEEEeccccCcccccccceeeecCCceEEEEEec--cCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHH
Confidence            77765432    2221122      224568888865  788766654 5664432  221211   100          


Q ss_pred             -------EEEe--CCCeeEEE--ecCCCeEEEEecCCeEEEEeCCCC
Q psy12911        155 -------MTIN--LPERCYCA--DVDYPLAVVGTAGRGIVLYQLEGK  190 (356)
Q Consensus       155 -------~~~~--~~~~~~~~--~~~~~~~~~~~~d~~i~i~d~~~~  190 (356)
                             ..+.  ....+..+  +-....+++-+..+.|.+||+..+
T Consensus       228 s~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  228 SSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             HHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence                   1111  11133333  444457888899999999999873

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=90.20  E-value=18  Score=34.68  Aligned_cols=78  Identities=13%  Similarity=0.095  Sum_probs=46.6

Q ss_pred             ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee-eeecCCC---CC--CC--cccccceEEEEEeCCCC
Q psy12911        203 YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF-KCHRSNG---GA--GG--VQDIYAVNGIVFHPVHG  274 (356)
Q Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~-~~~~~~~---~~--~~--~~~~~~i~~i~~sp~~~  274 (356)
                      ..|.++....-    +..++....||.|.++|-..-  +.+... .......   ..  .|  ++...++..++|||.+.
T Consensus       260 ~~V~si~~~~~----~~~v~~~~~DGsI~~~dr~t~--~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c  333 (753)
T PF11635_consen  260 KRVVSITSPEL----DIVVAFAFSDGSIEFRDRNTM--KELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC  333 (753)
T ss_pred             CeEEEEEeccc----CcEEEEEEcCCeEEEEecCcc--hhhcccccccCCccccccccccccccccCCCCceEEECcccc
Confidence            44555555555    678999999999999987544  222222 0000000   00  01  11111445689999999


Q ss_pred             EEEEEcCCCeEE
Q psy12911        275 TLATVGSEGTFS  286 (356)
Q Consensus       275 ~l~s~~~dg~i~  286 (356)
                      .++.-..+|.+.
T Consensus       334 ~~v~~~~~~~~~  345 (753)
T PF11635_consen  334 SLVQIDEDGKTK  345 (753)
T ss_pred             eEEEEecCCCce
Confidence            999999999866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=89.72  E-value=1.6  Score=28.37  Aligned_cols=42  Identities=12%  Similarity=0.082  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        281 SEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       281 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      .+|.+.-||..+++....+.+ -...+.|++++|+.+|+.+=.
T Consensus        35 ~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEG
T ss_pred             CCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEec
Confidence            468899999998765433332 234588999999999888753

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.60  E-value=4.6  Score=30.36  Aligned_cols=30  Identities=13%  Similarity=0.302  Sum_probs=23.2

Q ss_pred             ceeEEEEccCC------CeEEEEcCCCeEEEEEcCC
Q psy12911         78 PVLDVAWIDDG------TKVFMAGCDKTVKCWDLAS  107 (356)
Q Consensus        78 ~v~~~~~s~~~------~~l~~~~~dg~i~vwd~~~  107 (356)
                      .|..++|||.|      -.|++...++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68889999843      3677788899999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4460|consensus

Probab=89.40  E-value=6.7  Score=34.65  Aligned_cols=89  Identities=10%  Similarity=0.130  Sum_probs=53.2

Q ss_pred             cccceEEEeecCCCCCCCeEEEeecCCeEEEEE---eCCC----CCCCcce---eeeecCCCCCCCcccccceEEEEEeC
Q psy12911        202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQY---VNPA----NPKDNFT---FKCHRSNGGAGGVQDIYAVNGIVFHP  271 (356)
Q Consensus       202 ~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~---~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~i~~i~~sp  271 (356)
                      ...|..+..++.    |..++..+.+|.+.++-   +...    .++....   +.........   ...-.+..++|+|
T Consensus       103 ~feV~~vl~s~~----GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts---s~~ltl~Qa~WHP  175 (741)
T KOG4460|consen  103 LFEVYQVLLSPT----GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS---STSLTLKQAAWHP  175 (741)
T ss_pred             eEEEEEEEecCC----CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc---CCceeeeeccccC
Confidence            356777888888    78888888888766554   1110    0111111   1000000000   0111577899999


Q ss_pred             CC---CEEEEEcCCCeEEEEEcCcceecC
Q psy12911        272 VH---GTLATVGSEGTFSFWDKDARTKLK  297 (356)
Q Consensus       272 ~~---~~l~s~~~dg~i~iwd~~~~~~~~  297 (356)
                      +.   ..|..-+.|..||+||+...+.+.
T Consensus       176 ~S~~D~hL~iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  176 SSILDPHLVLLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             CccCCceEEEEecCcEEEEEecCCcchhh
Confidence            86   677788889999999998765554

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.33  E-value=13  Score=31.97  Aligned_cols=142  Identities=12%  Similarity=0.084  Sum_probs=80.2

Q ss_pred             EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCC--CeeEE
Q psy12911         46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTC  123 (356)
Q Consensus        46 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~v~~~  123 (356)
                      .++++..+|.|.-.|.+++...-...+......+..-.+..+|+ |+.++.++.+..+|..+|+.+....-..  .+..-
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            56666778877777777632111011111012222222333664 8888889999999998888776433333  12222


Q ss_pred             EEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEe------cCCCeEEEEec--CCeEEEEeCCCCcc
Q psy12911        124 HWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCAD------VDYPLAVVGTA--GRGIVLYQLEGKPQ  192 (356)
Q Consensus       124 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--d~~i~i~d~~~~~~  192 (356)
                      ..-  .++ .+..++.++.+...|..+++....+..... ....      .....++.+..  ++.+.-+|.+++..
T Consensus       149 ~v~--~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~  221 (370)
T COG1520         149 PVV--GDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL  221 (370)
T ss_pred             cEE--cCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence            221  333 344444789999999998988777665432 1111      23345556655  56677777766643

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.00  E-value=4.5  Score=30.39  Aligned_cols=35  Identities=11%  Similarity=-0.065  Sum_probs=27.4

Q ss_pred             ccceEEEeecCC--CCCCCeEEEeecCCeEEEEEeCC
Q psy12911        203 YQNRCIAIFRDK--KKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       203 ~~i~~~~~~~~~--~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                      ..+..++|+|.+  ......|++.+.++.+.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999963  33366789999999999996643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.69  E-value=13  Score=31.20  Aligned_cols=105  Identities=10%  Similarity=0.109  Sum_probs=54.0

Q ss_pred             eEEEEEeCC-----CeEEEEeccCCCce-eeeeeccCCcce--eEEEEccCCCeEEEEcC-----CCeEEEEEcCCCcee
Q psy12911         45 YFLIAGSWD-----NNVRCWEVEPNGKT-IPKSMQGMSEPV--LDVAWIDDGTKVFMAGC-----DKTVKCWDLASNQSM  111 (356)
Q Consensus        45 ~~l~~~~~d-----g~i~vw~~~~~~~~-~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~  111 (356)
                      .+++.|+.+     ..+..||+.+.... ....+..-..+.  .+++. -+++..+.|+.     ...+..||+.+.+..
T Consensus        74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~  152 (323)
T TIGR03548        74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEWF  152 (323)
T ss_pred             EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence            677777754     35666777663321 011111111111  12222 25666666664     246888998877655


Q ss_pred             eecc--cCCCeeEEEEEeCCCCCeEEEEECCC----eEEEEeCCCCC
Q psy12911        112 QVAQ--HDAPVKTCHWIKAPNYTCLMTGSWDK----TLKFWDLRTPQ  152 (356)
Q Consensus       112 ~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~  152 (356)
                      .+..  ........+..  .++++.+.|+.++    .+..||+++.+
T Consensus       153 ~~~~~p~~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       153 ELPDFPGEPRVQPVCVK--LQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             ECCCCCCCCCCcceEEE--ECCEEEEEcCCCCccccceEEEecCCCe
Confidence            4321  11222222233  5567788887664    35688888764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4499|consensus

Probab=88.62  E-value=10  Score=29.78  Aligned_cols=204  Identities=15%  Similarity=0.128  Sum_probs=99.2

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCC---CeEEEEcCCCeEEEEEcCCCc--eee-e-----
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG---TKVFMAGCDKTVKCWDLASNQ--SMQ-V-----  113 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~--~~~-~-----  113 (356)
                      .++.+--..|.|.-||...+. .....+.+  .++.++.+--.+   .+.+.++..-.|.-||.....  ..+ +     
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~-v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNK-VYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             eEEEEEeccCceehhhhhhhh-eEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            566666667788889988732 22223322  223344442222   234444444445557743221  111 1     


Q ss_pred             cccCCCeeEEEEEeCCCCCeEEEEEC-C---------CeEEEEeCCCCCceEEEe--CCCeeEEEecCCC-eEEEEecCC
Q psy12911        114 AQHDAPVKTCHWIKAPNYTCLMTGSW-D---------KTLKFWDLRTPQPIMTIN--LPERCYCADVDYP-LAVVGTAGR  180 (356)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~~~l~~~~~-d---------g~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~d~  180 (356)
                      .....+.+.-..+  |+|++++ |.. |         |.++.|-.. ++.-....  .-.+.+.++.+.. +.++-+.+-
T Consensus       105 d~kknR~NDgkvd--P~Gryy~-GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~  180 (310)
T KOG4499|consen  105 DRKKNRLNDGKVD--PDGRYYG-GTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNY  180 (310)
T ss_pred             hHHhcccccCccC--CCCceee-eeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCce
Confidence            1123455666667  8888743 332 1         334444321 11111111  1122333443333 334445566


Q ss_pred             eEEEEe--CCCCccccccc-----c-Ccc-cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911        181 GIVLYQ--LEGKPQEFKKT-----E-SPL-KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS  251 (356)
Q Consensus       181 ~i~i~d--~~~~~~~~~~~-----~-~~~-~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  251 (356)
                      .|.-||  ..++....+..     . .+. ......+++..+    +.++++.-..++|...|..++  +.+.+++-...
T Consensus       181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~e----G~L~Va~~ng~~V~~~dp~tG--K~L~eiklPt~  254 (310)
T KOG4499|consen  181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTE----GNLYVATFNGGTVQKVDPTTG--KILLEIKLPTP  254 (310)
T ss_pred             EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccC----CcEEEEEecCcEEEEECCCCC--cEEEEEEcCCC
Confidence            776666  33332111100     0 011 112233444444    777888888887777666555  77888777665


Q ss_pred             CCCCCCcccccceEEEEEeCC
Q psy12911        252 NGGAGGVQDIYAVNGIVFHPV  272 (356)
Q Consensus       252 ~~~~~~~~~~~~i~~i~~sp~  272 (356)
                                 .|++++|--.
T Consensus       255 -----------qitsccFgGk  264 (310)
T KOG4499|consen  255 -----------QITSCCFGGK  264 (310)
T ss_pred             -----------ceEEEEecCC
Confidence                       7999999643

>PRK13684 Ycf48-like protein; Provisional

Probab=88.58  E-value=14  Score=31.30  Aligned_cols=170  Identities=11%  Similarity=0.065  Sum_probs=0.0

Q ss_pred             EEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEE
Q psy12911         57 RCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLM  135 (356)
Q Consensus        57 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~  135 (356)
                      .||....+++.-......-...+.++.+.+++.+++++......+.++-....... ...-...++++.+.  ++++.++
T Consensus       153 ~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~--~~g~~~~  230 (334)
T PRK13684        153 AIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQ--PDGNLWM  230 (334)
T ss_pred             eEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEc--CCCCEEE


Q ss_pred             EEECCCeEEEEeCCCCCceEEEeCC-----CeeEEEecCCC-eEEEEecCCeEEEEeCCCCccccccccCcccccceEEE
Q psy12911        136 TGSWDKTLKFWDLRTPQPIMTINLP-----ERCYCADVDYP-LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIA  209 (356)
Q Consensus       136 ~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  209 (356)
                      ++.. |.+++=....++.-.....+     .....+.+..+ .+++++.+|.+..-.-....-...............+.
T Consensus       231 vg~~-G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~  309 (334)
T PRK13684        231 LARG-GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIV  309 (334)
T ss_pred             EecC-CEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEE


Q ss_pred             eecCCCCCCCeEEEeecCCeEEEEE
Q psy12911        210 IFRDKKKQPAGYGLGSVEGRVAIQY  234 (356)
Q Consensus       210 ~~~~~~~~~~~~~~~~~dg~i~i~~  234 (356)
                      +..+     ...++.+..|.|-.++
T Consensus       310 ~~~~-----~~~~~~G~~G~il~~~  329 (334)
T PRK13684        310 FLDP-----EKGFVLGQRGVLLRYV  329 (334)
T ss_pred             EeCC-----CceEEECCCceEEEec

>KOG0783|consensus

Probab=88.48  E-value=13  Score=35.14  Aligned_cols=54  Identities=13%  Similarity=-0.036  Sum_probs=34.9

Q ss_pred             CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeE
Q psy12911        171 PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRV  230 (356)
Q Consensus       171 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i  230 (356)
                      ..+++-..-|.++.|+-.+.....-.........+..++|..+      .++.++.||..
T Consensus       399 ~kll~lte~g~Vy~w~s~ns~~~~c~ftp~r~~~isdIa~~~N------~~~~~t~dGc~  452 (1267)
T KOG0783|consen  399 NKLLVLTELGEVYEWDSKNSTRTSCKFTPLRIFEISDIAWTAN------SLILCTRDGCW  452 (1267)
T ss_pred             hheeeeccCCeEEEEecCCCceeeeecccceeeehhhhhhccc------eEEEEecCcce
Confidence            3677788889999999766543332233233345566666654      67888888854

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.34  E-value=14  Score=31.12  Aligned_cols=81  Identities=7%  Similarity=0.106  Sum_probs=46.2

Q ss_pred             CcceeEEEEccCCCeEEEEcCCCe------EEEEEcCCC--c---e-----eeecccCC--------CeeEEEEEeCCCC
Q psy12911         76 SEPVLDVAWIDDGTKVFMAGCDKT------VKCWDLASN--Q---S-----MQVAQHDA--------PVKTCHWIKAPNY  131 (356)
Q Consensus        76 ~~~v~~~~~s~~~~~l~~~~~dg~------i~vwd~~~~--~---~-----~~~~~~~~--------~v~~~~~~~~~~~  131 (356)
                      -+.+..+.+.+++..+++.+.+|.      +..+++...  .   .     ..+....+        ..-+|++.  +++
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~--~~g   96 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVP--PDG   96 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEe--cCC
Confidence            356788888876666777777777      655555431  1   0     11111111        23466774  777


Q ss_pred             CeEEEEECC------CeEEEEeCCCCCceEEEeC
Q psy12911        132 TCLMTGSWD------KTLKFWDLRTPQPIMTINL  159 (356)
Q Consensus       132 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~  159 (356)
                      .++++.-.+      ..|+.++.. ++.+..+..
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~v  129 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPV  129 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEcc
Confidence            766665555      567777755 666555543

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=88.11  E-value=13  Score=30.94  Aligned_cols=67  Identities=12%  Similarity=0.032  Sum_probs=46.5

Q ss_pred             eeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC-CeeEE-----Eec--CCCeEEEEecCCeEEEEeCC
Q psy12911        120 VKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP-ERCYC-----ADV--DYPLAVVGTAGRGIVLYQLE  188 (356)
Q Consensus       120 v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~-----~~~--~~~~~~~~~~d~~i~i~d~~  188 (356)
                      ++++...  .+|.+|+++-.-..|.+.|-++++.+..+.++ ..-+.     +..  +...+-.+..++.|.+||-.
T Consensus       146 iNsV~~~--~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  146 INSVDKD--DDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             eeeeeec--CCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            6677666  88899999988889999999999999998776 22111     111  11233334567888888863

>PLN02153 epithiospecifier protein

Probab=88.04  E-value=15  Score=31.13  Aligned_cols=107  Identities=11%  Similarity=0.160  Sum_probs=52.9

Q ss_pred             eEEEEEeCC-----CeEEEEeccCCCceeeeeecc---CCcceeEEEEccCCCeEEEEcCC-----------CeEEEEEc
Q psy12911         45 YFLIAGSWD-----NNVRCWEVEPNGKTIPKSMQG---MSEPVLDVAWIDDGTKVFMAGCD-----------KTVKCWDL  105 (356)
Q Consensus        45 ~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~vwd~  105 (356)
                      .+++.|+.+     ..+.+||..+.....+..+..   ........+..-+++..+.|+.+           ..+.+||.
T Consensus        87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~  166 (341)
T PLN02153         87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI  166 (341)
T ss_pred             EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC
Confidence            666777653     247778877643332222210   01111111222355666676653           25778898


Q ss_pred             CCCceeeecccC-----CCeeEEEEEeCCCCCeEEEEECC-------------CeEEEEeCCCCCce
Q psy12911        106 ASNQSMQVAQHD-----APVKTCHWIKAPNYTCLMTGSWD-------------KTLKFWDLRTPQPI  154 (356)
Q Consensus       106 ~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~  154 (356)
                      .+.+-..+....     ..-.+++.   -++++++.++.+             ..+.+||+.+.+-.
T Consensus       167 ~~~~W~~l~~~~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~  230 (341)
T PLN02153        167 ADGKWVQLPDPGENFEKRGGAGFAV---VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT  230 (341)
T ss_pred             CCCeEeeCCCCCCCCCCCCcceEEE---ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence            877654432111     11112222   345565655432             45888998876533

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=87.89  E-value=18  Score=31.81  Aligned_cols=30  Identities=23%  Similarity=0.496  Sum_probs=25.0

Q ss_pred             ceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        263 AVNGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       263 ~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                      .|.+++..+..+.|++...+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            488999998889999999999999999963

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=87.84  E-value=18  Score=31.65  Aligned_cols=144  Identities=11%  Similarity=0.105  Sum_probs=86.8

Q ss_pred             ceEEEEEeCCCeEEEEeccCCCceeee--eeccCCcceeEEEEcc-----CCCeEEEEcCCCeEEEEEcCCC--c-----
Q psy12911         44 QYFLIAGSWDNNVRCWEVEPNGKTIPK--SMQGMSEPVLDVAWID-----DGTKVFMAGCDKTVKCWDLASN--Q-----  109 (356)
Q Consensus        44 ~~~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~vwd~~~~--~-----  109 (356)
                      ...|++|+..|.++||+....+.....  .-..-..+|..+..-+     +...||. -.-..+.||.+...  .     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence            379999999999999998664422111  1112457888887643     2234444 44678888887321  1     


Q ss_pred             ee---eecccC--CCeeEEEEEeC---CCCCeEEEEECCCeEEEEeCCCCCceEEEeC--CCeeEEEecCCCeEEEEecC
Q psy12911        110 SM---QVAQHD--APVKTCHWIKA---PNYTCLMTGSWDKTLKFWDLRTPQPIMTINL--PERCYCADVDYPLAVVGTAG  179 (356)
Q Consensus       110 ~~---~~~~~~--~~v~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d  179 (356)
                      ..   ....|.  .....+++-|-   ....+|..-+.||.+.+|+-+.-.....+..  -...++.....+.+++++.+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss  195 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS  195 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence            11   123332  33334443321   1246788899999999998554332222221  12456677777888888888


Q ss_pred             CeEEEEeCC
Q psy12911        180 RGIVLYQLE  188 (356)
Q Consensus       180 ~~i~i~d~~  188 (356)
                      ..+..|...
T Consensus       196 ~~l~~Yky~  204 (418)
T PF14727_consen  196 WTLECYKYQ  204 (418)
T ss_pred             eeEEEecHH
Confidence            888888763

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=87.81  E-value=11  Score=29.20  Aligned_cols=125  Identities=12%  Similarity=-0.038  Sum_probs=69.1

Q ss_pred             EEEecCC-CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC------eEEEE-Ee
Q psy12911        164 YCADVDY-PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG------RVAIQ-YV  235 (356)
Q Consensus       164 ~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg------~i~i~-~~  235 (356)
                      ..+...+ +.++++.....|.+|++........... ..-+.+..+.++..    |+++++--.+.      .+++| +|
T Consensus        21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F-~Tv~~V~~l~y~~~----GDYlvTlE~k~~~~~~~fvR~Y~NW   95 (215)
T PF14761_consen   21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTF-STVGRVLQLVYSEA----GDYLVTLEEKNKRSPVDFVRAYFNW   95 (215)
T ss_pred             ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEE-cchhheeEEEeccc----cceEEEEEeecCCccceEEEEEEEh
Confidence            3334445 6676778888999999984433322222 22377888998888    78888764332      55665 34


Q ss_pred             CCC--CCCCcc-eeeeecCCCCCCC----------cccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911        236 NPA--NPKDNF-TFKCHRSNGGAGG----------VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART  294 (356)
Q Consensus       236 ~~~--~~~~~~-~~~~~~~~~~~~~----------~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~  294 (356)
                      +..  ...++. .+-+|........          .+...+..+++..|-..-|+.|+ ++++.+|.+....
T Consensus        96 r~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen   96 RSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT  166 (215)
T ss_pred             hhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence            322  112222 2334332221111          11223567788877544455554 4579999876543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=86.92  E-value=4.7  Score=26.29  Aligned_cols=42  Identities=5%  Similarity=0.010  Sum_probs=30.7

Q ss_pred             cCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEE
Q psy12911         95 GCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGS  138 (356)
Q Consensus        95 ~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  138 (356)
                      ..+|.+..||..+++...+...-.-.+.++++  +|+..++.+-
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals--~d~~~vlv~E   75 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALS--PDESFVLVAE   75 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEESSEEEEEE---TTSSEEEEEE
T ss_pred             CCCcCEEEEECCCCeEEEehhCCCccCeEEEc--CCCCEEEEEe
Confidence            34688999999999877666556678999999  9988776653

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.64  E-value=18  Score=30.50  Aligned_cols=111  Identities=16%  Similarity=0.158  Sum_probs=60.1

Q ss_pred             cceEEEeecCCCCCCCeEEEeecC------CeEEEEEeCCCCCCCcceeeeecCC--CC--CCCcccccceEEEEEeCCC
Q psy12911        204 QNRCIAIFRDKKKQPAGYGLGSVE------GRVAIQYVNPANPKDNFTFKCHRSN--GG--AGGVQDIYAVNGIVFHPVH  273 (356)
Q Consensus       204 ~i~~~~~~~~~~~~~~~~~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~i~~i~~sp~~  273 (356)
                      ...++++.++    +.++++.-.+      ..|..++.+ +  .....+......  ..  ..+.+.+..+.+++++|+|
T Consensus        86 D~Egi~~~~~----g~~~is~E~~~~~~~~p~I~~~~~~-G--~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG  158 (326)
T PF13449_consen   86 DPEGIAVPPD----GSFWISSEGGRTGGIPPRIRRFDLD-G--RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG  158 (326)
T ss_pred             ChhHeEEecC----CCEEEEeCCccCCCCCCEEEEECCC-C--cccceEccccccccccCccccccCCCCeEEEEECCCC
Confidence            4456666444    4455544444      556666554 2  223333211111  00  0233444579999999999


Q ss_pred             CEEEEEcC-----CC---------eEEEE--EcCc-cee----cCCCCC-----CccceEEEEECCCCCEEEEE
Q psy12911        274 GTLATVGS-----EG---------TFSFW--DKDA-RTK----LKPSEA-----MDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       274 ~~l~s~~~-----dg---------~i~iw--d~~~-~~~----~~~~~~-----~~~~v~~~~~s~~~~~l~~~  321 (356)
                      +.|+++.+     |+         .++++  |..+ ++.    ...+..     ....|..+.+-+++++|+.-
T Consensus       159 ~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  159 RTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             CEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence            96665533     22         14554  4443 212    223332     35678999999999988764

>smart00564 PQQ beta-propeller repeat

Probab=86.61  E-value=1.5  Score=21.93  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=20.4

Q ss_pred             CEEEEEcCCCeEEEEEcCcceecCC
Q psy12911        274 GTLATVGSEGTFSFWDKDARTKLKP  298 (356)
Q Consensus       274 ~~l~s~~~dg~i~iwd~~~~~~~~~  298 (356)
                      ..++.++.+|.+..+|.++|+.+..
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEE
Confidence            3677788899999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=86.49  E-value=19  Score=30.60  Aligned_cols=38  Identities=5%  Similarity=-0.038  Sum_probs=19.9

Q ss_pred             eEEEEEcCccee--cCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        284 TFSFWDKDARTK--LKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       284 ~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      .+.+||.++.+-  +..+..  ..-...+..-++++++.|+.
T Consensus       291 ~~e~yd~~~~~W~~~~~lp~--~~~~~~~~~~~~~iyv~GG~  330 (346)
T TIGR03547       291 SSEVYALDNGKWSKVGKLPQ--GLAYGVSVSWNNGVLLIGGE  330 (346)
T ss_pred             EeeEEEecCCcccccCCCCC--CceeeEEEEcCCEEEEEecc
Confidence            467888775432  222221  11122334457888888864

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG3522|consensus

Probab=85.85  E-value=2.9  Score=38.91  Aligned_cols=135  Identities=16%  Similarity=0.187  Sum_probs=82.8

Q ss_pred             CeEEEEecCCeEEEEeCCCCc--cccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC---CCCcce
Q psy12911        171 PLAVVGTAGRGIVLYQLEGKP--QEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN---PKDNFT  245 (356)
Q Consensus       171 ~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~---~~~~~~  245 (356)
                      +.+.+++.++.|.++.-....  ........+....+.++.+++.      .+..|.-||++-.|--....   ..+...
T Consensus       548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~------Slgagl~dgt~a~y~rap~gSwd~ep~~~  621 (925)
T KOG3522|consen  548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG------SLGAGLIDGTLAVYGRAPSGSWDGEPNIS  621 (925)
T ss_pred             CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc------ccccCccCCccccccCCCCCCCCCCCccc
Confidence            467888899999998876322  2222222334455666666654      45556666666554221110   001111


Q ss_pred             eeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC---CccceEEEEECCCCCEEEEEe
Q psy12911        246 FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA---MDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~s  322 (356)
                      +...           ..++...++..|   ++.++.+|.|.++...+......+..   |...|+++.....|=+++.++
T Consensus       622 ~~~g-----------~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafas  687 (925)
T KOG3522|consen  622 IPTG-----------SLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFAS  687 (925)
T ss_pred             cccC-----------Cccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcC
Confidence            1111           127888888644   55667899999999887655555543   456899999999999999998


Q ss_pred             ccC
Q psy12911        323 SYD  325 (356)
Q Consensus       323 ~~d  325 (356)
                      ++-
T Consensus       688 G~~  690 (925)
T KOG3522|consen  688 GDE  690 (925)
T ss_pred             CCE
Confidence            875

>smart00564 PQQ beta-propeller repeat

Probab=85.76  E-value=2.3  Score=21.25  Aligned_cols=25  Identities=32%  Similarity=0.284  Sum_probs=19.9

Q ss_pred             eEEEEECCCeEEEEeCCCCCceEEE
Q psy12911        133 CLMTGSWDKTLKFWDLRTPQPIMTI  157 (356)
Q Consensus       133 ~l~~~~~dg~i~iwd~~~~~~~~~~  157 (356)
                      .++.++.+|.+..+|.++++.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5777888899999999888776543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=85.36  E-value=24  Score=30.56  Aligned_cols=24  Identities=13%  Similarity=0.097  Sum_probs=15.5

Q ss_pred             CCCCeEEEEECC-----------CeEEEEeCCCCC
Q psy12911        129 PNYTCLMTGSWD-----------KTLKFWDLRTPQ  152 (356)
Q Consensus       129 ~~~~~l~~~~~d-----------g~i~iwd~~~~~  152 (356)
                      .++.+.+.|+.+           ..+..||..+.+
T Consensus        83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~  117 (376)
T PRK14131         83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS  117 (376)
T ss_pred             ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence            456677777653           247788887654

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=85.30  E-value=34  Score=32.34  Aligned_cols=32  Identities=6%  Similarity=0.206  Sum_probs=25.3

Q ss_pred             cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEe
Q psy12911        114 AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD  147 (356)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd  147 (356)
                      -.-...|...+|+  .|.+.++....+..|.+++
T Consensus       109 G~v~nGIvaa~wS--~DE~~~cvvt~~r~il~~~  140 (1243)
T COG5290         109 GKVSNGIVAASWS--ADEKTWCVVTSTREILLFD  140 (1243)
T ss_pred             ccccCceEEEeec--cCCceEEEEEcCceEEEEe
Confidence            3456778889999  8888777777788888876

>PF01011 PQQ: PQQ enzyme repeat family

Probab=84.85  E-value=3.8  Score=21.52  Aligned_cols=29  Identities=17%  Similarity=0.118  Sum_probs=22.5

Q ss_pred             eEEEEECCCeEEEEeCCCCCceEEEeCCC
Q psy12911        133 CLMTGSWDKTLKFWDLRTPQPIMTINLPE  161 (356)
Q Consensus       133 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  161 (356)
                      .++.++.+|.|.-.|.++|+.+..++...
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~   30 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP   30 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence            35556888999999999998888877543

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.62  E-value=25  Score=30.27  Aligned_cols=102  Identities=14%  Similarity=0.134  Sum_probs=56.0

Q ss_pred             CCeeEEEecCCCCCceEEEEEe-----------CCC-eEEEEeccC-CCce-eeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGS-----------WDN-NVRCWEVEP-NGKT-IPKSMQGMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~-----------~dg-~i~vw~~~~-~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      .....|+|.++|   +++++-.           ..+ .|.+++-.. .+.. ....+...-.....+++.+++  |+++.
T Consensus        14 ~~P~~ia~d~~G---~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~   88 (367)
T TIGR02604        14 RNPIAVCFDERG---RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT   88 (367)
T ss_pred             CCCceeeECCCC---CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC
Confidence            355689999998   7666542           223 677775433 2221 112333333456889999888  44444


Q ss_pred             CCCeEEEEEcCCC-----ce--e-e-ecc----cCCCeeEEEEEeCCCCCeEEEEE
Q psy12911         96 CDKTVKCWDLASN-----QS--M-Q-VAQ----HDAPVKTCHWIKAPNYTCLMTGS  138 (356)
Q Consensus        96 ~dg~i~vwd~~~~-----~~--~-~-~~~----~~~~v~~~~~~~~~~~~~l~~~~  138 (356)
                      .....++.|....     +.  + . +..    +......++|.  +||.+.++-+
T Consensus        89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g--pDG~LYv~~G  142 (367)
T TIGR02604        89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG--PDGWLYFNHG  142 (367)
T ss_pred             CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC--CCCCEEEecc
Confidence            4433334354321     11  1 1 111    23447789998  8988777655

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4659|consensus

Probab=84.06  E-value=50  Score=33.30  Aligned_cols=61  Identities=13%  Similarity=0.112  Sum_probs=38.0

Q ss_pred             eEEEEEeCCCCEEEEEc------------CCCeEEEEEcCcce---------------ecCCCCCCccceEEEEECCCCC
Q psy12911        264 VNGIVFHPVHGTLATVG------------SEGTFSFWDKDART---------------KLKPSEAMDMSISTCALNHNGQ  316 (356)
Q Consensus       264 i~~i~~sp~~~~l~s~~------------~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~s~~~~  316 (356)
                      -.+|+++++|.+.++-+            .||.|.+.--....               -...-.+|-..+.++|.+|||.
T Consensus       595 ~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~  674 (1899)
T KOG4659|consen  595 QRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD  674 (1899)
T ss_pred             hhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc
Confidence            36789999887666543            45556555321111               1112234556788999999999


Q ss_pred             EEEEEecc
Q psy12911        317 IFAYAVSY  324 (356)
Q Consensus       317 ~l~~~s~~  324 (356)
                      ..++-+++
T Consensus       675 v~IAD~gN  682 (1899)
T KOG4659|consen  675 VIIADSGN  682 (1899)
T ss_pred             EEEecCCc
Confidence            88876654

>KOG3616|consensus

Probab=84.05  E-value=2.3  Score=39.16  Aligned_cols=97  Identities=13%  Similarity=0.117  Sum_probs=60.5

Q ss_pred             cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC
Q psy12911        202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS  281 (356)
Q Consensus       202 ~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~  281 (356)
                      ...++++.-+|.    +..++.+..||.|.+|++...+...+.+...              +-..+.|...|  |++...
T Consensus        14 ~e~~~aiqshp~----~~s~v~~~~d~si~lfn~~~r~qski~~~~~--------------p~~nlv~tnhg--l~~~ts   73 (1636)
T KOG3616|consen   14 DEFTTAIQSHPG----GQSFVLAHQDGSIILFNFIPRRQSKICEEAK--------------PKENLVFTNHG--LVTATS   73 (1636)
T ss_pred             cceeeeeeecCC----CceEEEEecCCcEEEEeecccchhhhhhhcC--------------Cccceeeeccc--eEEEec
Confidence            345677888888    8899999999999999997765444443332              34456676555  556666


Q ss_pred             CCeEEEEEcCcceecCCCCCC---ccceEEEEECCCCCEEE
Q psy12911        282 EGTFSFWDKDARTKLKPSEAM---DMSISTCALNHNGQIFA  319 (356)
Q Consensus       282 dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~  319 (356)
                      |..+.-|.-. |-..+.+...   .....++...|..+-++
T Consensus        74 drr~la~~~d-gvvqqqfdyndqsekefss~~cdptaqnvv  113 (1636)
T KOG3616|consen   74 DRRALAWKED-GVVQQQFDYNDQSEKEFSSILCDPTAQNVV  113 (1636)
T ss_pred             cchhheeecc-CcchhhccccchhhhhccceecCchhhhhh
Confidence            7777777643 4333334321   22445555566555443

>KOG1898|consensus

Probab=83.14  E-value=49  Score=32.43  Aligned_cols=102  Identities=16%  Similarity=0.149  Sum_probs=61.7

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeee-eeccCCcceeEEEEccCC------CeEEEEcCCCeEEEEEcCCCceee---ec
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPK-SMQGMSEPVLDVAWIDDG------TKVFMAGCDKTVKCWDLASNQSMQ---VA  114 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~------~~l~~~~~dg~i~vwd~~~~~~~~---~~  114 (356)
                      ..++.+-.+|.+.-+.....++.... .-..-...|.|+++.++.      ++++.++.|+++++..+.....+.   ..
T Consensus       550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q  629 (1205)
T KOG1898|consen  550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ  629 (1205)
T ss_pred             eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence            45666666777777766543332211 112345678899998754      579999999999999988665544   33


Q ss_pred             ccCCCeeEEEEEeC-CCC------CeEEEEECCCeEEEE
Q psy12911        115 QHDAPVKTCHWIKA-PNY------TCLMTGSWDKTLKFW  146 (356)
Q Consensus       115 ~~~~~v~~~~~~~~-~~~------~~l~~~~~dg~i~iw  146 (356)
                      +-..++.++.+-+. .++      -+|.+|-.+|.+.-+
T Consensus       630 ~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~  668 (1205)
T KOG1898|consen  630 GLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF  668 (1205)
T ss_pred             ccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence            44555555554421 122      245666667765444

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=82.31  E-value=33  Score=29.91  Aligned_cols=69  Identities=6%  Similarity=-0.072  Sum_probs=38.6

Q ss_pred             ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC
Q psy12911        203 YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE  282 (356)
Q Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d  282 (356)
                      ..+..+.+.++    + .+++++..|.+....-...+.+....-..-..           .++.+.|.++++.+++| .+
T Consensus       328 ~~l~~v~~~~d----~-~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~-----------~ly~v~f~~~~~g~~~G-~~  390 (398)
T PLN00033        328 FGILDVGYRSK----K-EAWAAGGSGILLRSTDGGKSWKRDKGADNIAA-----------NLYSVKFFDDKKGFVLG-ND  390 (398)
T ss_pred             cceEEEEEcCC----C-cEEEEECCCcEEEeCCCCcceeEccccCCCCc-----------ceeEEEEcCCCceEEEe-CC
Confidence            34777888776    3 46666777766554322222111111011111           58899998777666666 67


Q ss_pred             CeEEEE
Q psy12911        283 GTFSFW  288 (356)
Q Consensus       283 g~i~iw  288 (356)
                      |.|.-|
T Consensus       391 G~il~~  396 (398)
T PLN00033        391 GVLLRY  396 (398)
T ss_pred             cEEEEe
Confidence            776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
3mmy_A	368	Structural And Functional Analysis Of The Interacti		1e-145
2i3t_A	341	Bub3 Complex With Mad3 (Bubr1) Glebs Motif Length =		2e-16
1yfq_A	342	High Resolution S. Cerevisiae Bub3 Mitotic Checkpoi		2e-16
2i3s_A	349	Bub3 Complex With Bub1 Glebs Motif Length = 349		2e-16
1u4c_A	349	Structure Of Spindle Checkpoint Protein Bub3 Length		2e-16
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-08
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-08
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-08
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-08
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-08
2h9l_A	329	Wdr5delta23 Length = 329		6e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-08
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-08
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-08
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-08
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-08
2g99_A	308	Structural Basis For The Specific Recognition Of Me		8e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-07
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		8e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		8e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-06
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		6e-05
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		7e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		8e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		8e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		8e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		9e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		4e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		6e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		6e-04

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score =  511 bits (1315), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 235/337 (69%), Positives = 275/337 (81%), Gaps = 2/337 (0%)
Query: 20  KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
           KD EV S P+DSI C++FSP TLP  FLIAGSW N+VRCWEV+ +G+TIPK+ Q  + PV
Sbjct: 30  KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 89
Query: 80  LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW 139
           LDV W DDG+KVF A CDKT K WDL+SNQ++Q+AQHDAPVKT HWIKAPNY+C+MTGSW
Sbjct: 90  LDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW 149
Query: 140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
           DKTLKFWD R+  P+M + LPERCYCADV YP+AVV TA RG+++YQLE +P EF++ ES
Sbjct: 150 DKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIES 209
Query: 200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKCHRSNG-GAGG 257
           PLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP KDNFTFKCHRSNG     
Sbjct: 210 PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269
Query: 258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI 317
            QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK SE +D  IS C  NHNG I
Sbjct: 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329
Query: 318 FAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
           FAYA SYDWSKGHE  NP K N IFLR   E++KPR+
Sbjct: 330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366

>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif Length = 341

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 28/293 (9%)
Query: 23  EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM--SEPVL 80
           ++   P+D IS +   PS   +  L+  SWD ++  ++ +   K +   +Q +    P+L
Sbjct: 5   QIEQAPKDYISDIKIIPS---KSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLL 60
Query: 81  DVAWIDD-GTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGS 138
              +ID+   ++++      +   DL  + S Q +  ++A +  C   K  +   L+  S
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK-LIAAS 119
Query: 139 WDKTLKFWDLRT--PQPIMTINL-------PERCYCADVDYPLAVVGTAGRGIVLYQL-E 188
           WD  ++  D R      I   NL         + +  D +    +VG     +  ++L  
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 189 GKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA----NPKDNF 244
            +       ES LKYQ R +A+     K+  GY   S++GRVA+++ +      N    F
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALL---PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297
            F+CHR N     +   Y VN I F P H  L T GS+G  S W+   R K+K
Sbjct: 237 AFRCHRLNLKDTNLA--YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287

>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint Protein Length = 342

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 28/293 (9%)
Query: 23  EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM--SEPVL 80
           ++   P+D IS +   PS   +  L+  SWD ++  ++ +   K +   +Q +    P+L
Sbjct: 5   QIEQAPKDYISDIKIIPS---KSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLL 60
Query: 81  DVAWIDD-GTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGS 138
              +ID+   ++++      +   DL  + S Q +  ++A +  C   K  +   L+  S
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK-LIAAS 119
Query: 139 WDKTLKFWDLRT--PQPIMTINL-------PERCYCADVDYPLAVVGTAGRGIVLYQL-E 188
           WD  ++  D R      I   NL         + +  D +    +VG     +  ++L  
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 189 GKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA----NPKDNF 244
            +       ES LKYQ R +A+     K+  GY   S++GRVA+++ +      N    F
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALL---PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297
            F+CHR N     +   Y VN I F P H  L T GS+G  S W+   R K+K
Sbjct: 237 AFRCHRLNLKDTNLA--YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287

>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif Length = 349

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 28/293 (9%)
Query: 23  EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM--SEPVL 80
           ++   P+D IS +   PS   +  L+  SWD ++  ++ +   K +   +Q +    P+L
Sbjct: 5   QIEQAPKDYISDIKIIPS---KSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLL 60
Query: 81  DVAWIDD-GTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGS 138
              +ID+   ++++      +   DL  + S Q +  ++A +  C   K  +   L+  S
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK-LIAAS 119
Query: 139 WDKTLKFWDLRT--PQPIMTINL-------PERCYCADVDYPLAVVGTAGRGIVLYQL-E 188
           WD  ++  D R      I   NL         + +  D +    +VG     +  ++L  
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 189 GKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA----NPKDNF 244
            +       ES LKYQ R +A+     K+  GY   S++GRVA+++ +      N    F
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALL---PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297
            F+CHR N     +   Y VN I F P H  L T GS+G  S W+   R K+K
Sbjct: 237 AFRCHRLNLKDTNLA--YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287

>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3 Length = 349

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 28/293 (9%)
Query: 23  EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM--SEPVL 80
           ++   P+D IS +   PS   +  L+  SWD ++  ++ +   K +   +Q +    P+L
Sbjct: 5   QIEQAPKDYISDIKIIPS---KSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLL 60
Query: 81  DVAWIDD-GTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGS 138
              +ID+   ++++      +   DL  + S Q +  ++A +  C   K  +   L+  S
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK-LIAAS 119
Query: 139 WDKTLKFWDLRT--PQPIMTINL-------PERCYCADVDYPLAVVGTAGRGIVLYQL-E 188
           WD  ++  D R      I   NL         + +  D +    +VG     +  ++L  
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTXDTNSSRLIVGXNNSQVQWFRLPL 179
Query: 189 GKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA----NPKDNF 244
            +       ES LKYQ R +A+     K+  GY   S++GRVA+++ +      N    F
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALL---PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297
            F+CHR N     +   Y VN I F P H  L T GS+G  S W+   R K+K
Sbjct: 237 AFRCHRLNLKDTNLA--YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L A S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 28  AVSSVKFSPN---GEWLAASSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 82
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 140
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 141 TGKCLKTL 148

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 28  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 82
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 140
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 141 TGKCLKTL 148

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 28  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 82
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 140
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 141 TGKCLKTL 148

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 49  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 103
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 161
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 162 TGKCLKTL 169

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 31  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 85
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 86  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 143
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 144 TGKCLKTL 151

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 31  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 85
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 86  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 143
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 144 TGKCLKTL 151

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 47  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 101
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 159
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 160 TGKCLKTL 167

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 42  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 96
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 97  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 154
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 155 TGKCLKTL 162

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 26  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 80
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 81  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 138
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 139 TGKCLKTL 146

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 30  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 84
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 85  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 142
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 143 TGKCLKTL 150

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 24  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 78
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 79  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 136
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 137 TGKCLKTL 144

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 31  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 85
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 86  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 143
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 144 TGKCLKTL 151

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 25  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 79
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 80  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 137
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 138 TGKCLKTL 145

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 25  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 79
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 80  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 137
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 138 TGKCLKTL 145

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 21  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 75
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 76  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 133
Query: 150 TPQPIMTI 157
           T + + T+
Sbjct: 134 TGKCLKTL 141

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 28  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 82
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 140
Query: 150 TPQPIMTI 157
           T   + T+
Sbjct: 141 TGMCLKTL 148

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
           ++S + FSP+     +L + S D  ++ W    +GK   K++ G    + DVAW  D   
Sbjct: 28  AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 82
Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           +  A  DKT+K WD++S + ++  + H   V  C++   P    +++GS+D++++ WD++
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 140
Query: 150 TPQPIMTI 157
           T   + T+
Sbjct: 141 TGMCLKTL 148

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 128/308 (41%), Gaps = 40/308 (12%)
Query: 20  KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
           K+   +     S+  +AFSP       + + S D  V+ W    NG+ + +++ G S  V
Sbjct: 7   KERNRLEAHSSSVRGVAFSP---DGQTIASASDDKTVKLWN--RNGQLL-QTLTGHSSSV 60
Query: 80  LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW 139
             VA+  DG  +  A  DKTVK W+        +  H + V+   +  +P+   + + S 
Sbjct: 61  WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF--SPDGQTIASASD 118
Query: 140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
           DKT+K W+ R  Q + T+            +  +V G A      +  +G+       + 
Sbjct: 119 DKTVKLWN-RNGQLLQTL----------TGHSSSVWGVA------FSPDGQTIASASDDK 161
Query: 200 PLKYQNRCIAIFRDKKKQPAG-YGLG-SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG 257
            +K  NR   + +      +  +G+  S +G+        A+  D+ T K    NG    
Sbjct: 162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTI------ASASDDKTVKLWNRNGQL-- 213
Query: 258 VQDIY----AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNH 313
           +Q +     +V G+ F P   T+A+   + T   W+++ +  L+       S++  A   
Sbjct: 214 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVNGVAFRP 272
Query: 314 NGQIFAYA 321
           +GQ  A A
Sbjct: 273 DGQTIASA 280

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 8/147 (5%)
Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG 88
            D +SC+ FSP+TL Q  +++ SWD  V+ W +  N K +  ++ G +  V  VA   DG
Sbjct: 517 RDWVSCVRFSPNTL-QPTIVSASWDKTVKVWNLS-NCK-LRSTLAGHTGYVSTVAVSPDG 573
Query: 89  TKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
           +     G D  V  WDLA  + +   + ++ +    +     + C  T   +  +K WDL
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT---EHGIKIWDL 630
Query: 149 RTPQPI--MTINLPERCYCADVDYPLA 173
            +   +  + ++L      AD   P A
Sbjct: 631 ESKSIVEDLKVDLKAEAEKADNSGPAA 657

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 24  VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVA 83
           VV P  D++    FS     Q     G+ D  ++ ++ E   K +   ++   + VL  A
Sbjct: 617 VVRPHTDAVYHACFSQD--GQRIASCGA-DKTLQVFKAETGEKLL--DIKAHEDEVLCCA 671
Query: 84  WIDDGTKVFMAGCDKTVKCWDLASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWDKT 142
           +  D + +     DK VK WD A+ + +    +H   V  CH+    N+  L TGS D  
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 143 LKFWDLRTPQ 152
           LK WDL   +
Sbjct: 732 LKLWDLNQKE 741

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 24  VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVA 83
           VV P  D++    FS     Q     G+ D  ++ ++ E   K +   ++   + VL  A
Sbjct: 610 VVRPHTDAVYHACFSQD--GQRIASCGA-DKTLQVFKAETGEKLL--DIKAHEDEVLCCA 664
Query: 84  WIDDGTKVFMAGCDKTVKCWDLASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWDKT 142
           +  D + +     DK VK WD A+ + +    +H   V  CH+    N+  L TGS D  
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 143 LKFWDLRTPQ 152
           LK WDL   +
Sbjct: 725 LKLWDLNQKE 734

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 46  FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
           F ++ SWD+++R W ++ NG+   K + G ++ VL VA+  D  ++   G D  ++ W++
Sbjct: 81  FAVSASWDHSLRLWNLQ-NGQCQYKFL-GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV 138
Query: 106 ASN--QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI 157
                 ++    H   V    +  + +   +++G WD  +K WDL T + +  +
Sbjct: 139 KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL 192

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 20/146 (13%)
Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPK------SMQGMSEPVLDV 82
           ED ++ +A SP      ++ AGS D  VR W+ E  G  + +      S  G  + V  V
Sbjct: 206 EDGVTTVAVSPG--DGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSV 262
Query: 83  AWIDDGTKVFMAGCDKTVKCWDL--ASNQSMQVAQHDAPVKTCHW---------IKAPNY 131
            +  DG  V     D++VK W+L  A+N+S     +    +  +              N 
Sbjct: 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 322
Query: 132 TCLMTGSWDKTLKFWDLRTPQPIMTI 157
             +++GS D+ + FWD ++  P++ +
Sbjct: 323 EYILSGSKDRGVLFWDKKSGNPLLML 348

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 46  FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
           F ++GSWD  +R W++     T  +   G ++ VL VA+  D  ++     DKT+K W+ 
Sbjct: 100 FALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157
Query: 106 AS--NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
                 ++Q   H   V    +    +   +++  WDK +K W+L
Sbjct: 158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 46  FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
           F ++GSWD  +R W++     T  +   G ++ VL VA+  D  ++     DKT+K W+ 
Sbjct: 77  FALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 134
Query: 106 --ASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
                 ++Q   H   V    +    +   +++  WDK +K W+L
Sbjct: 135 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Query: 27  PPEDSISCMAFSPSTLPQY-----FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLD 81
           PPE        SP T   +      +++ S D  ++ W+ E       ++++G ++ V D
Sbjct: 98  PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTLKGHTDSVQD 155
Query: 82  VAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWD 140
           +++   G  +     D T+K WD    + ++    HD  V +   +  PN   +++ S D
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM--PNGDHIVSASRD 213
Query: 141 KTLKFWDLRTPQPIMTIN 158
           KT+K W+++T   + T  
Sbjct: 214 KTIKMWEVQTGYCVKTFT 231

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 25  VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVL--DV 82
           V+   + +S  +F+ S +    ++  S D     W+VE     + +S  G    VL  D+
Sbjct: 150 VAMHTNYLSACSFTNSDMQ---ILTASGDGTCALWDVESG--QLLQSFHGHGADVLCLDL 204
Query: 83  AWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDK 141
           A  + G      GCDK    WD+ S Q +Q  + H++ V +  +   P+     +GS D 
Sbjct: 205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYY--PSGDAFASGSDDA 262
Query: 142 TLKFWDLRTPQPIMTINLPERCYCA-DVDYPLA 173
           T + +DLR  + +   +     + A  VD+ L+
Sbjct: 263 TCRLYDLRADREVAIYSKESIIFGASSVDFSLS 295

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 30  DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT 89
           D I  +A  P T P  ++++GS D  V+ W  E N   + ++ +G    V+ VA+     
Sbjct: 98  DYIRSIAVHP-TKP--YVLSGSDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 90  KVFMAGC-DKTVKCWDLAS---NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF 145
             F +GC D+TVK W L     N ++   Q    V    +   P+   ++T S D T+K 
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERG-VNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 146 WDLRTPQPIMTI 157
           WD +T   + T+
Sbjct: 213 WDYQTKSCVATL 224

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 30  DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT 89
           D I  +A  P+   + ++++GS D  V+ W  E N   + ++ +G    V+ VA+     
Sbjct: 98  DYIRSIAVHPT---KPYVLSGSDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 90  KVFMAGC-DKTVKCWDLAS---NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF 145
             F +GC D+TVK W L     N ++   Q    V    +   P+   ++T S D T+K 
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERG-VNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 146 WDLRTPQPIMTI 157
           WD +T   + T+
Sbjct: 213 WDYQTKSCVATL 224

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 30  DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT 89
           D I  +A  P+   + ++++GS D  V+ W  E N   + ++ +G    V+ VA+     
Sbjct: 98  DYIRSIAVHPT---KPYVLSGSDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 90  KVFMAGC-DKTVKCWDLAS---NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF 145
             F +GC D+TVK W L     N ++   Q    V    +   P+   ++T S D T+K 
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERG-VNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 146 WDLRTPQPIMTI 157
           WD +T   + T+
Sbjct: 213 WDYQTKSCVATL 224

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 30  DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT 89
           D I  +A  P+   + ++++GS D  V+ W  E N   + ++ +G    V+ VA+     
Sbjct: 98  DYIRSIAVHPT---KPYVLSGSDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 90  KVFMAGC-DKTVKCWDLAS---NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF 145
             F +GC D+TVK W L     N ++   Q    V    +   P+   ++T S D T+K 
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERG-VNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 146 WDLRTPQPIMTI 157
           WD +T   + T+
Sbjct: 213 WDYQTKSCVATL 224

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 47  LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA 106
           +++G++D  V+ W+  P  +T   ++QG +  V  + +  DG  V     D +++ WD+ 
Sbjct: 252 VVSGAYDFMVKVWD--PETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE 307
Query: 107 SNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER 162
           +   +        + +   +K      L++G+ D T+K WD++T Q + T+  P +
Sbjct: 308 TGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 46  FLIAGSWDNNVRCWEVEPNGKT--IP-KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102
            L++ S D  +  W++  + +   +P +S +G S  V D     DG     A  DKT++ 
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           WD+A+ ++ Q    H + V +    K    + +++GS DKT+K W ++
Sbjct: 92  WDVATGETYQRFVGHKSDVXSVDIDKKA--SXIISGSRDKTIKVWTIK 137

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 71  SMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN-QSMQVAQHDAPVKTCHWIK-A 128
           ++QG S  V  +AW  DG ++   G D  V+ WD  S+        H+A VK   W    
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271
Query: 129 PNYTCLMTGSWDKTLKFWDLRTPQPIMTIN 158
            N      G+ DK + FW+  T   + T++
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNTVD 301

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 46  FLIAGSWDNNVRCWEVEPNGKT--IP-KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102
            L++ S D  +  W++  + +   +P +S +G S  V D     DG     A  DKT++ 
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           WD+A+ ++ Q    H + V +    K    + +++GS DKT+K W ++
Sbjct: 92  WDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK 137

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 46  FLIAGSWDNNVRCWEVEPNGKT--IP-KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102
            L++ S D  +  W++  + +   +P +S +G S  V D     DG     A  DKT++ 
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           WD+A+ ++ Q    H + V +    K    + +++GS DKT+K W ++
Sbjct: 92  WDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK 137

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 46  FLIAGSWDNNVRCWEVEPNGKT--IP-KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102
            L++ S D  +  W++  + +   +P +S +G S  V D     DG     A  DKT++ 
Sbjct: 26  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           WD+A+ ++ Q    H + V +    K    + +++GS DKT+K W ++
Sbjct: 86  WDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK 131

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 46  FLIAGSWDNNVRCWEVEPNGKT--IP-KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102
            L++ S D  +  W++  + +   +P +S +G S  V D     DG     A  DKT++ 
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           WD+A+ ++ Q    H + V +    K    + +++GS DKT+K W ++
Sbjct: 92  WDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK 137

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 46  FLIAGSWDNNVRCWEVEPNGKT--IP-KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102
            L++ S D  +  W++  + +   +P +S +G S  V D     DG     A  DKT++ 
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
           WD+A+ ++ Q    H + V +    K    + +++GS DKT+K W ++
Sbjct: 92  WDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK 137

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 103/240 (42%), Gaps = 28/240 (11%)
Query: 23  EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDV 82
            +++    S+ C+ +      +  +I GS D+ VR W+V  N   +  ++    E VL +
Sbjct: 167 RILTGHTGSVLCLQYD-----ERVIITGSSDSTVRVWDV--NTGEMLNTLIHHCEAVLHL 219
Query: 83  AWIDDGTKVFMAGC--DKTVKCWDLASNQSMQVAQ----HDAPVKTCHWIKAPNYTCLMT 136
            + ++G    M  C  D+++  WD+AS   + + +    H A V    +    +   +++
Sbjct: 220 RF-NNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF----DDKYIVS 271
Query: 137 GSWDKTLKFWDLRTPQPIMTINLPER-CYCADVDYPLAVVGTAGRGIVLYQLE-GKPQEF 194
            S D+T+K W+  T + + T+N  +R   C      L V G++   I L+ +E G     
Sbjct: 272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV 331
Query: 195 KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG 254
            +    L    RCI    D K+  +G   G ++    +  ++P  P      +    + G
Sbjct: 332 LEGHEELV---RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 386

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 114/282 (40%), Gaps = 41/282 (14%)
Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKT-----IPKSMQGMSEPVLDVAWI 85
           +I  +A+ P T     L AGS+D+ V  W  E +        +   ++G    V  VAW 
Sbjct: 60  AIRSVAWRPHT---SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 86  DDGTKVFMAGCDKTVKCWDLASNQSMQ-------VAQHDAPVKTCHWIKAPNYTCLMTGS 138
           +DG   ++A C +    W   +++S +       + +H   VK  H I  P+   L + S
Sbjct: 117 NDG--YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK--HVIWHPSEALLASSS 172
Query: 139 WDKTLKFWDLRTP--QPIMTINLPE-RCYCADVDYPLAVV----GTAGRGIVLYQLEGKP 191
           +D T++ W       + +  +N  E   + +D D    V     G+    + +++  G  
Sbjct: 173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232
Query: 192 QEFKKTESPLKYQNRCIAIFRDKKKQP---AGYGLGSVEGRVAIQYVNPANPKDNFTFKC 248
           ++ ++       +  C AI  D  K+      +G   +   V    V     + +  +K 
Sbjct: 233 EDDQQ-------EWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKV 285
Query: 249 HRSNGGAGGVQDIYAVNGIVFHPVHG--TLATVGSEGTFSFW 288
                   GV   Y +N + +  ++G   LAT G +G  +FW
Sbjct: 286 FAKRALCHGV---YEINVVKWLELNGKTILATGGDDGIVNFW 324

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 19/116 (16%)
Query: 46  FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
           F I+ SWD  +R W++     T  K   G    V  VA+  D  ++  AG ++ +K W++
Sbjct: 90  FAISSSWDKTLRLWDLRTG--TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGS--------------WDKTLKFWD 147
                   A+ +       W+    Y+ +M  +              WD  LK W+
Sbjct: 148 LGECKFSSAEKE---NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 53  DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ 112
           D N+  W++  + +T+ +  QG ++    +   +DGTK++  G D TV+ WDL   + +Q
Sbjct: 162 DGNIAVWDL--HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219
Query: 113 VAQHD 117
             QHD
Sbjct: 220 --QHD 222

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 32  ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
           I+ + F PS      LI+ S D  ++ W V+      P+++ G    V D+A ID G  V
Sbjct: 139 ITKLKFFPSGEA---LISSSQDMQLKIWSVKDGSN--PRTLIGHRATVTDIAIIDRGRNV 193
Query: 92  FMAGCDKTVKCWDLASNQSMQ 112
             A  D T++ W+  +  ++ 
Sbjct: 194 LSASLDGTIRLWECGTGTTIH 214

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 32  ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
           I+ + F PS      LI+ S D  ++ W V+      P+++ G    V D+A ID G  V
Sbjct: 142 ITKLKFFPSGEA---LISSSQDMQLKIWSVKDGSN--PRTLIGHRATVTDIAIIDRGRNV 196
Query: 92  FMAGCDKTVKCWDLASNQSMQ 112
             A  D T++ W+  +  ++ 
Sbjct: 197 LSASLDGTIRLWECGTGTTIH 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.86
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.84
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.83
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.78
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.77
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.77
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.77
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.74
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.74
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.74
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.74
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.73
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.72
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.69
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.67
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.65
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.65
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.65
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.64
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.64
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.61
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.58
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.57
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.57
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.57
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.56
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.56
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.55
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.53
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.49
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.46
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.46
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.45
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.45
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.44
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.42
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.42
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.41
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.33
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.27
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.27
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.26
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.24
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.24
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.22
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.2
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.2
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.2
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.2
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.15
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.14
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.14
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.13
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.1
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.09
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.04
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.04
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.02
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.02
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.02
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.99
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.98
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.96
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.96
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.95
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.95
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.94
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.92
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.85
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.85
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.83
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.83
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.82
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.82
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.81
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.75
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.72
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.71
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.71
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.69
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.68
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.63
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.61
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.56
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.55
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.54
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.5
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.5
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.49
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.44
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.41
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.39
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.34
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.32
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.25
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.24
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.24
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.21
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.19
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.15
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.14
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.13
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.07
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.06
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.05
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.96
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.95
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.94
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.93
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.9
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.86
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.85
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.83
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.83
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.82
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.8
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.79
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.77
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.75
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.74
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.73
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.69
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.69
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.66
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.62
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.58
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.51
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.47
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.43
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.4
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.31
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.27
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.24
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.19
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.19
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.09
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.07
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.06
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.02
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.88
3ott_A	758	Two-component system sensor histidine kinase; beta	96.85
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.7
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.68
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.64
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.28
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.24
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.98
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.94
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.58
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.58
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.5
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.43
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.07
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.93
3ott_A	758	Two-component system sensor histidine kinase; beta	94.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.6
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.18
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.99
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.58
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.44
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.32
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.34
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.14
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	87.01
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	86.72
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.77
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.64
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	82.28
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	81.02

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.5e-53  Score=358.38  Aligned_cols=341  Identities=69%  Similarity=1.232  Sum_probs=298.5

Q ss_pred             CCCCCCCCceEEeCCCCCCeeEEEecCC---CCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCC
Q psy12911         13 TSTPNPNKDFEVVSPPEDSISCMAFSPS---TLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT   89 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~   89 (356)
                      .....+.+.+..+.+|.+.|++++|+|+   |   ++|++|+.||.|+|||+.+.+......+.+|...|.+++|+|+++
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   99 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPG---NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS   99 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTSSS---EEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCCCc---eEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC
Confidence            4456778899999999999999999999   6   899999999999999998755666578889999999999999999


Q ss_pred             eEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecC
Q psy12911         90 KVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVD  169 (356)
Q Consensus        90 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (356)
                      +|++++.||.|++||+.+++......|...|.+++|++.+++.+|++++.||.|++||+++++.+..+..+..+.++.+.
T Consensus       100 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  179 (368)
T 3mmy_A          100 KVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI  179 (368)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec
Confidence            99999999999999999999988889999999999954499999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC-CCcceeee
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKC  248 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~  248 (356)
                      .+.+++++.++.+.+|+++..................++++.++....+..+++++.||.+++|+++.... .....+.+
T Consensus       180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  259 (368)
T 3mmy_A          180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC  259 (368)
T ss_dssp             TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred             CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence            99999999999999999998877666666667777888888887443344599999999999999987644 45566676


Q ss_pred             ecCCCC-CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCc
Q psy12911        249 HRSNGG-AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWS  327 (356)
Q Consensus       249 ~~~~~~-~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~  327 (356)
                      |..... .....+..+|++++|+|++++|++++.||.|++||+.+++++..+..|...|++++|+|+|++|+++++|||.
T Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~  339 (368)
T 3mmy_A          260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWS  339 (368)
T ss_dssp             SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCST
T ss_pred             eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccc
Confidence            664221 1111222369999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCceeeecccccccCCCCCC
Q psy12911        328 KGHEHNNPNKGNAIFLRPCFEDMKPRSGS  356 (356)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (356)
                      +.++.|+.+.+.+++++++.+++|||+++
T Consensus       340 ~~~~~~~~~~~~~i~~~~~~~~~~p~~~~  368 (368)
T 3mmy_A          340 KGHEFYNPQKKNYIFLRNAAEELKPRNKK  368 (368)
T ss_dssp             TCGGGCCTTSCCEEEEECCTTTTSBC---
T ss_pred             ccccccCCCccceeeehhcCcccCcccCC
Confidence            99999999999999999999999999874

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.4e-49  Score=340.20  Aligned_cols=282  Identities=17%  Similarity=0.285  Sum_probs=250.6

Q ss_pred             eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911         22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK  101 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  101 (356)
                      ...+.+|.++|++++|+|++   .+|++|+.||+|+|||+.++  .....+.+|...|.+++|+|++++|++|+.|++|+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~---~~l~s~s~Dg~i~vwd~~~~--~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~  175 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVF---SVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK  175 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSS---SEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             eEeecccCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECCCC--cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            45678999999999999999   99999999999999999883  44578899999999999999999999999999999


Q ss_pred             EEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEEEe
Q psy12911        102 CWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVVGT  177 (356)
Q Consensus       102 vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  177 (356)
                      +||+.+++++. +.+|...|.+++|+  |++++|++|+.|++|++||+++++++..+..+..   .+.+.+++..+++++
T Consensus       176 iwd~~~~~~~~~~~~h~~~V~~v~~~--p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s  253 (410)
T 1vyh_C          176 LWDFQGFECIRTMHGHDHNVSSVSIM--PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS  253 (410)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEeCCCCceeEEEcCCCCCEEEEEEe--CCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence            99999988776 78899999999999  9999999999999999999999999999987763   345566778999999


Q ss_pred             cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCC----------------CCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911        178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKK----------------QPAGYGLGSVEGRVAIQYVNPANPK  241 (356)
Q Consensus       178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~dg~i~i~~~~~~~~~  241 (356)
                      .|+.|++||+++......  ...+...+.+++|+|+...                .+.++++|+.|+.|++||+...  .
T Consensus       254 ~D~~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~--~  329 (410)
T 1vyh_C          254 NDQTVRVWVVATKECKAE--LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--M  329 (410)
T ss_dssp             TTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT--E
T ss_pred             CCCeEEEEECCCCceeeE--ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC--c
Confidence            999999999988754322  2357788999999986321                1568999999999999999766  5


Q ss_pred             CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEE
Q psy12911        242 DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                      .+..+.+|..           .|++++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|
T Consensus       330 ~~~~~~~h~~-----------~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg  398 (410)
T 1vyh_C          330 CLMTLVGHDN-----------WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG  398 (410)
T ss_dssp             EEEEEECCSS-----------CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred             eEEEEECCCC-----------cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEE
Confidence            6778888887           89999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccC
Q psy12911        322 VSYD  325 (356)
Q Consensus       322 s~~d  325 (356)
                      +.|+
T Consensus       399 s~D~  402 (410)
T 1vyh_C          399 SVDQ  402 (410)
T ss_dssp             ETTS
T ss_pred             eCCC
Confidence            8654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.8e-49  Score=324.69  Aligned_cols=283  Identities=16%  Similarity=0.201  Sum_probs=243.3

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      .+..+++.+|.+.|++++|+|++   ++|++|+.||.|+|||+++  ......+..|..+|.+++|+|++++|++|+.|+
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~---~~l~s~~~dg~v~lWd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~   77 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTE---PWVLTTLYSGRVELWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF   77 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSS---SEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred             ceeEEeecCCCCceEEEEECCCC---CEEEEEcCCCcEEEEECCC--CceeEEeeccCCcEEEEEEeCCCCEEEEECCCC
Confidence            35567889999999999999999   9999999999999999987  345578889999999999999999999999999


Q ss_pred             eEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC-ceEEEeCCC-eeEEEecC---CCe
Q psy12911         99 TVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ-PIMTINLPE-RCYCADVD---YPL  172 (356)
Q Consensus        99 ~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~-~~~~~~~~---~~~  172 (356)
                      +|++||+.+++.+. +.+|...|.+++|+  |++.+|++|+.|++|++||++++. ....+..+. .+.++.+.   +..
T Consensus        78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST  155 (304)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred             EEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence            99999999998876 78899999999999  999999999999999999998874 445666655 34444443   468


Q ss_pred             EEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCC
Q psy12911        173 AVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSN  252 (356)
Q Consensus       173 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  252 (356)
                      +++++.|+.|++||++........ ...+...+..+.++|...  +.++++++.|+.|++||++..  +.+.++.+|.. 
T Consensus       156 l~sgs~D~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~--~~~l~s~s~D~~i~iWd~~~~--~~~~~~~~h~~-  229 (304)
T 2ynn_A          156 FASGCLDRTVKVWSLGQSTPNFTL-TTGQERGVNYVDYYPLPD--KPYMITASDDLTIKIWDYQTK--SCVATLEGHMS-  229 (304)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEE-ECCCTTCEEEEEECCSTT--CCEEEEEETTSEEEEEETTTT--EEEEEEECCSS-
T ss_pred             EEEEeCCCeEEEEECCCCCcccee-ccCCcCcEEEEEEEEcCC--CCEEEEEcCCCeEEEEeCCCC--ccceeeCCCCC-
Confidence            999999999999999876543322 224556788888887421  678999999999999999866  67888889887 


Q ss_pred             CCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCC--EEEEEecc
Q psy12911        253 GGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQ--IFAYAVSY  324 (356)
Q Consensus       253 ~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~s~~  324 (356)
                                .|.+++|+|++++|++|+.||+|++||+.+++++..+..|...+.+++|+|++.  ++++|+.+
T Consensus       230 ----------~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~  293 (304)
T 2ynn_A          230 ----------NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN  293 (304)
T ss_dssp             ----------CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT
T ss_pred             ----------CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC
Confidence                      899999999999999999999999999999999999999999999999999886  57777643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-48  Score=325.22  Aligned_cols=284  Identities=16%  Similarity=0.191  Sum_probs=247.8

Q ss_pred             ceEEeCCCCCCeeEEEecCCCC-CceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTL-PQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      .+..+++|.+.|++++|+|++. ++.+|++|+.|++|+||++..........+.+|...|.+++|++++.++++++.|++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            3456789999999999998531 126999999999999999987444455678999999999999999999999999999


Q ss_pred             EEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEE
Q psy12911        100 VKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVV  175 (356)
Q Consensus       100 i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  175 (356)
                      |++||+.+++.+. +..|...+.+++|+  |++++|++++.||.|++||+++++....+..+..   .+++++++.++++
T Consensus       104 i~lWd~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las  181 (321)
T 3ow8_A          104 IRLWDLENGKQIKSIDAGPVDAWTLAFS--PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS  181 (321)
T ss_dssp             EEEEETTTTEEEEEEECCTTCCCCEEEC--TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCccEEEEEEC--CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence            9999999998876 67788899999999  9999999999999999999999998888876653   4566777889999


Q ss_pred             EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      ++.|+.|++||++++.....  ...+...+.+++|+|+    +.++++++.|+.|++||++..  .....+.+|..    
T Consensus       182 g~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd----~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~----  249 (321)
T 3ow8_A          182 GAIDGIINIFDIATGKLLHT--LEGHAMPIRSLTFSPD----SQLLVTASDDGYIKIYDVQHA--NLAGTLSGHAS----  249 (321)
T ss_dssp             EETTSCEEEEETTTTEEEEE--ECCCSSCCCEEEECTT----SCEEEEECTTSCEEEEETTTC--CEEEEECCCSS----
T ss_pred             EcCCCeEEEEECCCCcEEEE--EcccCCceeEEEEcCC----CCEEEEEcCCCeEEEEECCCc--ceeEEEcCCCC----
Confidence            99999999999998754322  2356788999999999    789999999999999999765  56777888887    


Q ss_pred             CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                             .|.+++|+|++++|++++.|++|++||+.+++++..+.+|.+.|.+++|+|++++|++++.|+
T Consensus       250 -------~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~  312 (321)
T 3ow8_A          250 -------WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ  312 (321)
T ss_dssp             -------CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             -------ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence                   899999999999999999999999999999999999999999999999999999999998654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.4e-47  Score=320.85  Aligned_cols=284  Identities=16%  Similarity=0.211  Sum_probs=241.9

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      .+.+....+.+|.+.|++++|+|++   ++|++|+.||+|+|||+.+.  .....+..|...|.+++|+|++++|++++.
T Consensus        43 ~~~~~~~~l~gH~~~v~~~~~s~d~---~~l~s~s~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  117 (340)
T 1got_B           43 IQMRTRRTLRGHLAKIYAMHWGTDS---RLLLSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGL  117 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTTEEEEEETTTC--CEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             ccchhheeecCCCCceEEEEECCCC---CEEEEEeCCCcEEEEECCCC--CcceEeecCCccEEEEEECCCCCEEEEEeC
Confidence            3456778899999999999999999   99999999999999999873  344677889999999999999999999999


Q ss_pred             CCeEEEEEcCCCc----ee-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEec
Q psy12911         97 DKTVKCWDLASNQ----SM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADV  168 (356)
Q Consensus        97 dg~i~vwd~~~~~----~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~  168 (356)
                      |+.|++|++.+++    .. .+.+|...|.++.|+  +++ .+++++.|+.|++||+++++.+..+..+..   .+.+++
T Consensus       118 d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~  194 (340)
T 1got_B          118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP  194 (340)
T ss_dssp             TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             CCeEEEEECccCCCcceeEEEecCCCccEEEEEEC--CCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC
Confidence            9999999998764    22 267899999999998  665 489999999999999999999999887653   445566


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee
Q psy12911        169 DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC  248 (356)
Q Consensus       169 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~  248 (356)
                      ++..+++++.|+.|++||++++.....  ...|...|.+++|+|+    +..+++++.|+.|++||++..  ..+..+..
T Consensus       195 ~~~~l~sg~~d~~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~----~~~l~s~s~d~~v~iwd~~~~--~~~~~~~~  266 (340)
T 1got_B          195 DTRLFVSGACDASAKLWDVREGMCRQT--FTGHESDINAICFFPN----GNAFATGSDDATCRLFDLRAD--QELMTYSH  266 (340)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCSEEEE--ECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTT--EEEEEECC
T ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEE--EcCCcCCEEEEEEcCC----CCEEEEEcCCCcEEEEECCCC--cEEEEEcc
Confidence            677999999999999999988653322  2357788999999999    889999999999999999765  23333321


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +.         ....|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|+|++|++|+.|.
T Consensus       267 ~~---------~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~  334 (340)
T 1got_B          267 DN---------IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             TT---------CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             CC---------cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence            11         011699999999999999999999999999999999999999999999999999999999998654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=8.8e-47  Score=318.80  Aligned_cols=284  Identities=14%  Similarity=0.206  Sum_probs=241.1

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      ..+....+.+|.+.|++++|+|++   ++|++|+.||+|+|||..+.  .....+..|...|.+++|+|++.+|++++.|
T Consensus        53 ~~~~~~~l~gH~~~V~~~~~s~d~---~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d  127 (354)
T 2pbi_B           53 VMKTRRTLKGHGNKVLCMDWCKDK---RRIVSSSQDGKVIVWDSFTT--NKEHAVTMPCTWVMACAYAPSGCAIACGGLD  127 (354)
T ss_dssp             CCCEEEEEECCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCEEEECTTSSEEEEESTT
T ss_pred             ccEEEEEecCCCCeEEEEEECCCC---CEEEEEeCCCeEEEEECCCC--CcceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence            456678899999999999999999   99999999999999999873  3346677789999999999999999999999


Q ss_pred             CeEEEEEcCCCc-------eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEE--Ee
Q psy12911         98 KTVKCWDLASNQ-------SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYC--AD  167 (356)
Q Consensus        98 g~i~vwd~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~--~~  167 (356)
                      +.+++|++....       ...+..|...|.+++|+  +++..|++++.|++|++||+++++.+..+..+.. +.+  +.
T Consensus       128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~  205 (354)
T 2pbi_B          128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT--NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA  205 (354)
T ss_dssp             SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             CCEEEEEEeccccccccccceeeeccCCcEEEEEEe--CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEE
Confidence            999999986542       22356799999999999  9999999999999999999999999999987763 334  44


Q ss_pred             c--CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911        168 V--DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT  245 (356)
Q Consensus       168 ~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  245 (356)
                      +  .+..+++++.|+.|++||++++.....  ...|...|.+++|+|+    +..+++++.|+.|++||++..  ..+..
T Consensus       206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~----~~~l~s~s~D~~v~lwd~~~~--~~~~~  277 (354)
T 2pbi_B          206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQA--FETHESDVNSVRYYPS----GDAFASGSDDATCRLYDLRAD--REVAI  277 (354)
T ss_dssp             CCSSCCEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTT--EEEEE
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCcEEEE--ecCCCCCeEEEEEeCC----CCEEEEEeCCCeEEEEECCCC--cEEEE
Confidence            4  346899999999999999998754322  2357788999999999    789999999999999999765  22322


Q ss_pred             eeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        246 FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +..+..         ...+.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|||++|++|+.|.
T Consensus       278 ~~~~~~---------~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          278 YSKESI---------IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             ECCTTC---------CSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             EcCCCc---------ccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence            222211         11689999999999999999999999999999999999999999999999999999999999654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.8e-47  Score=321.26  Aligned_cols=279  Identities=16%  Similarity=0.218  Sum_probs=226.5

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeC------CCeEEEEeccCCCc--eeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSW------DNNVRCWEVEPNGK--TIPKSMQGMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~------dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      ....|++.|++++|+|||   ++||+|+.      |+.|++|+..++..  .+.....+|...|.+++|+|+++ +++++
T Consensus        37 ~p~~H~~~V~~v~fSpDG---~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s  112 (357)
T 4g56_B           37 APACMEVQIGAVRYRRDG---ALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVAS  112 (357)
T ss_dssp             ---CCCSEEEEEEECSSS---CEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEE
T ss_pred             CcccccCCEEEEEECCCC---CEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEE
Confidence            346799999999999999   99999997      78899999876332  22334457899999999999985 56677


Q ss_pred             CCCeEEEEEcCCCceee-----ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEE--Ee
Q psy12911         96 CDKTVKCWDLASNQSMQ-----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYC--AD  167 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~--~~  167 (356)
                      .||+|+|||+.+++...     ..+|...|.+++|+  |++++|++|+.|+.|++||+++++.+..+..+.. +.+  +.
T Consensus       113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s--pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s  190 (357)
T 4g56_B          113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF--SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC  190 (357)
T ss_dssp             TTSCEEEC--------CCCCEEECCCSSCEEEEEEC--SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            89999999999876542     34799999999999  9999999999999999999999999999987653 434  44


Q ss_pred             cCCC-eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee
Q psy12911        168 VDYP-LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       168 ~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~  246 (356)
                      +.++ .+++++.|+.|++||++++..........+...+.+++|+|+.   +.++++|+.|+.|++||++..  +.+..+
T Consensus       191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~---~~~la~g~~d~~i~~wd~~~~--~~~~~~  265 (357)
T 4g56_B          191 PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK---DDTFACGDETGNVSLVNIKNP--DSAQTS  265 (357)
T ss_dssp             TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTS---TTEEEEEESSSCEEEEESSCG--GGCEEE
T ss_pred             cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcc---cceEEEeecccceeEEECCCC--cEeEEE
Confidence            4554 7889999999999999987655554445567789999999984   568899999999999999765  667788


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECC-CCCEEEEEecc
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNH-NGQIFAYAVSY  324 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~s~~  324 (356)
                      .+|..           .|++++|+|++ ++||+|+.|++|+|||+++++++..+ +|.+.|++|+|+| |+++|++++.|
T Consensus       266 ~~~~~-----------~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~D  333 (357)
T 4g56_B          266 AVHSQ-----------NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWD  333 (357)
T ss_dssp             CCCSS-----------CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             eccce-----------eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCC
Confidence            88877           89999999997 68999999999999999999887665 7999999999998 89999999865


Q ss_pred             C
Q psy12911        325 D  325 (356)
Q Consensus       325 d  325 (356)
                      +
T Consensus       334 g  334 (357)
T 4g56_B          334 H  334 (357)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.2e-47  Score=325.82  Aligned_cols=301  Identities=16%  Similarity=0.250  Sum_probs=243.1

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      +........+.+|.+.|++++|+|++   ++|++|+.||+|+|||+.+  ......+..|...|.+++|+|++++|++|+
T Consensus        53 ~~~~~~~~~l~gH~~~V~~~~~sp~~---~~l~s~s~D~~v~iWd~~~--~~~~~~~~~h~~~v~~~~~s~~g~~las~~  127 (380)
T 3iz6_a           53 PTDLVCCRTLQGHSGKVYSLDWTPEK---NWIVSASQDGRLIVWNALT--SQKTHAIKLHCPWVMECAFAPNGQSVACGG  127 (380)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEECTTS---SCEEEEETTSEEEEEETTT--TEEEEEEECCCTTCCCCEECTTSSEEEECC
T ss_pred             cceeEEeecccccccEEEEEEEcCCC---CEEEEEeCCCeEEEEECCC--CccceEEecCCCCEEEEEECCCCCEEEEee
Confidence            44556678899999999999999999   9999999999999999987  344577889999999999999999999999


Q ss_pred             CCCeEEEEEcCCCc-------e-eeecccCCCeeEEEEEeCCC-CCeEEEEECCCeEEEEeCCCCCceEEEe-----CCC
Q psy12911         96 CDKTVKCWDLASNQ-------S-MQVAQHDAPVKTCHWIKAPN-YTCLMTGSWDKTLKFWDLRTPQPIMTIN-----LPE  161 (356)
Q Consensus        96 ~dg~i~vwd~~~~~-------~-~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~  161 (356)
                      .|+.|++||+.+..       . ..+.+|.+.|.++.|+  |+ +..|++|+.|++|++||+++++.+..+.     .+.
T Consensus       128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~--~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~  205 (380)
T 3iz6_a          128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYV--PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT  205 (380)
T ss_dssp             SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCC--SSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred             CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEe--cCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence            99999999997532       1 2267899999999999  54 5679999999999999999999888773     222


Q ss_pred             -eeEEEec---CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        162 -RCYCADV---DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       162 -~~~~~~~---~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                       .+.++.+   ++..+++++.|+.|++||++........ ...|...|.+++|+|+    +..+++++.|+.|++||++.
T Consensus       206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~-~~~h~~~v~~v~~~p~----~~~l~s~s~D~~i~lwd~~~  280 (380)
T 3iz6_a          206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT-YHGHEGDINSVKFFPD----GQRFGTGSDDGTCRLFDMRT  280 (380)
T ss_dssp             SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE-ECCCSSCCCEEEECTT----SSEEEEECSSSCEEEEETTT
T ss_pred             cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE-ECCcCCCeEEEEEecC----CCeEEEEcCCCeEEEEECCC
Confidence             3455444   5579999999999999999854333322 2357889999999999    88999999999999999986


Q ss_pred             CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC----CCCccceEEEEECC
Q psy12911        238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS----EAMDMSISTCALNH  313 (356)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~s~  313 (356)
                      .  ..+..+..+....    ..+...|++++|+|+|++|++|+.||.|++||+.+++.+..+    .+|.+.|++++|+|
T Consensus       281 ~--~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~  354 (380)
T 3iz6_a          281 G--HQLQVYNREPDRN----DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS  354 (380)
T ss_dssp             T--EEEEEECCCCSSS----CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS
T ss_pred             C--cEEEEeccccccc----ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC
Confidence            5  3344443332110    011125899999999999999999999999999888776554    68999999999999


Q ss_pred             CCCEEEEEeccCCcCCCccCCCCC
Q psy12911        314 NGQIFAYAVSYDWSKGHEHNNPNK  337 (356)
Q Consensus       314 ~~~~l~~~s~~d~~~~~~~~~~~~  337 (356)
                      ||++|++|+.|.   ...+|+...
T Consensus       355 dg~~l~sgs~D~---~i~iW~~~~  375 (380)
T 3iz6_a          355 DGSALCTGSWDK---NLKIWAFSG  375 (380)
T ss_dssp             SSSEEEEECTTS---CEEEEECCS
T ss_pred             CCCEEEEeeCCC---CEEEEecCC
Confidence            999999998554   444555443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.3e-46  Score=314.05  Aligned_cols=276  Identities=17%  Similarity=0.252  Sum_probs=222.9

Q ss_pred             CCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccC---------CCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         26 SPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEP---------NGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      ..|...|.+++|+|||   ++|++++ |+++++||...         ...........|...|.+++|+|++ .|++|+.
T Consensus        27 ~~~~~~v~~~~fs~dG---~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~  101 (344)
T 4gqb_B           27 ACMERQLEAARYRSDG---ALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASD  101 (344)
T ss_dssp             SSCCSEEEEEEECTTS---CEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEET
T ss_pred             ccccCCEEEEEECCCC---CEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEEC
Confidence            4578889999999999   8988887 77888887421         0011112223467789999999985 7889999


Q ss_pred             CCeEEEEEcCCCceee-----ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEE--Eec
Q psy12911         97 DKTVKCWDLASNQSMQ-----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYC--ADV  168 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~--~~~  168 (356)
                      ||+|+|||+.+++...     ..+|...|++++|+  |++++|++|+.|++|++||+++++++..+..|.. +.+  +.+
T Consensus       102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s--pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~  179 (344)
T 4gqb_B          102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL--SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP  179 (344)
T ss_dssp             TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred             CCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence            9999999999887543     34799999999999  9999999999999999999999999999987763 444  444


Q ss_pred             CCC-eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911        169 DYP-LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK  247 (356)
Q Consensus       169 ~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  247 (356)
                      .+. .+++++.|++|++||++++..........+...+.+++|+|+.   +.++++|+.||.|++||++..  +.+.++.
T Consensus       180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~l~sg~~dg~v~~wd~~~~--~~~~~~~  254 (344)
T 4gqb_B          180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ---SEVFVFGDENGTVSLVDTKST--SCVLSSA  254 (344)
T ss_dssp             SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSC---TTEEEEEETTSEEEEEESCC----CCEEEE
T ss_pred             CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCC---CcceEEeccCCcEEEEECCCC--cEEEEEc
Confidence            553 6789999999999999987655444444556678999999973   568899999999999999876  6788999


Q ss_pred             eecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCE-EEEEeccC
Q psy12911        248 CHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI-FAYAVSYD  325 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~s~~d  325 (356)
                      +|..           .|++++|+|++ ++||+|+.|++|+|||+.+++++ .+.+|.+.|++++|+|+++. |++++.|.
T Consensus       255 ~h~~-----------~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~  322 (344)
T 4gqb_B          255 VHSQ-----------CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDH  322 (344)
T ss_dssp             CCSS-----------CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             CCCC-----------CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence            9988           89999999998 68999999999999999988765 46789999999999999975 55666443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.5e-46  Score=313.10  Aligned_cols=312  Identities=23%  Similarity=0.369  Sum_probs=268.9

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-ceeeeeeccCCcceeEEEEccCCC-eEEEEcCCC
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-KTIPKSMQGMSEPVLDVAWIDDGT-KVFMAGCDK   98 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg   98 (356)
                      .+.+..+|.+.|++++|+|++   ++|++++.|+.|+||++.... ......+.+|...|.+++|+|+++ +|++++.||
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~---~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   79 (342)
T 1yfq_A            3 IVQIEQAPKDYISDIKIIPSK---SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGG---TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             ceecccCCCCcEEEEEEcCCC---CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCC
Confidence            455677999999999999998   999999999999999998743 122345568999999999999999 999999999


Q ss_pred             eEEEEEc-CCCceeeecc--cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC---------CCceEEEeCCCeeEEE
Q psy12911         99 TVKCWDL-ASNQSMQVAQ--HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT---------PQPIMTINLPERCYCA  166 (356)
Q Consensus        99 ~i~vwd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~  166 (356)
                      .|++||+ .+++...+..  |...|.+++|+  + +.+|++++.|+.|++||+++         ++++..+.....+.++
T Consensus        80 ~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~--~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  156 (342)
T 1yfq_A           80 EILKVDLIGSPSFQALTNNEANLGICRICKY--G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM  156 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCSCEEEEEEE--T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred             eEEEEEeccCCceEeccccCCCCceEEEEeC--C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEE
Confidence            9999999 9888877888  99999999999  7 89999999999999999998         7777777777778888


Q ss_pred             ecCCCeEEEEecCCeEEEEeCCC-CccccccccCcccccceEEEeec-CCCCCCCeEEEeecCCeEEEEEeCCC--C--C
Q psy12911        167 DVDYPLAVVGTAGRGIVLYQLEG-KPQEFKKTESPLKYQNRCIAIFR-DKKKQPAGYGLGSVEGRVAIQYVNPA--N--P  240 (356)
Q Consensus       167 ~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~--~--~  240 (356)
                      .+.++.+++++.++.|++||++. ...........+...+.+++|+| +    +..+++++.+|.+++|+++..  .  .
T Consensus       157 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~----~~~l~~~~~dg~i~i~~~~~~~~~~~~  232 (342)
T 1yfq_A          157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE----QEGYACSSIDGRVAVEFFDDQGDDYNS  232 (342)
T ss_dssp             EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG----GCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred             EecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC----CCEEEEEecCCcEEEEEEcCCCccccc
Confidence            88888899999999999999998 55444444556778899999999 8    789999999999999999765  1  2


Q ss_pred             CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC-ccceEEEEECCCCCEEE
Q psy12911        241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM-DMSISTCALNHNGQIFA  319 (356)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~  319 (356)
                      .....+..|.....  +..+...|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++  |++++|+
T Consensus       233 ~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~  308 (342)
T 1yfq_A          233 SKRFAFRCHRLNLK--DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILC  308 (342)
T ss_dssp             TTCEEEECCCCCTT--CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEE
T ss_pred             ccceeeeccccccc--ccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEE
Confidence            55667777754221  1122337999999999999999999999999999999999999998 99999999  9999999


Q ss_pred             EEeccCC-cCCCcc--CCCCCCceeeecc-c
Q psy12911        320 YAVSYDW-SKGHEH--NNPNKGNAIFLRP-C  346 (356)
Q Consensus       320 ~~s~~d~-~~~~~~--~~~~~~~~~~~~~-~  346 (356)
                      +++.|++ .++.+.  ..+..++.+++++ +
T Consensus       309 s~s~Dg~~~~~~~~~~~~~~~~~~i~~~~~~  339 (342)
T 1yfq_A          309 LATSDDTFKTNAAIDQTIELNASSIYIIFDY  339 (342)
T ss_dssp             EEEECTHHHHCSSSCTTSCCCCCEEEEEETC
T ss_pred             EEecCCcccccccccccCCCCCceEEEeccc
Confidence            9999999 888887  7788889999998 5

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.8e-45  Score=303.44  Aligned_cols=283  Identities=16%  Similarity=0.218  Sum_probs=242.4

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      .......+.+|.+.|++++|+|++   ++|++|+.||.|++|++.++  .....+.+|...|.+++|+|++++|++++.|
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~---~~l~s~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   86 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNG---EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDD   86 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CceeEEEEcccCCcEEEEEECCCC---CEEEEeeCCCeEEEEeCCCc--ccchhhccCCCceEEEEEcCCCCEEEEECCC
Confidence            345667789999999999999999   99999999999999999873  4456788999999999999999999999999


Q ss_pred             CeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeE
Q psy12911         98 KTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLA  173 (356)
Q Consensus        98 g~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~  173 (356)
                      +.|++||+.+++.+. +.+|...|.+++|+  |++++|++++.|+.|++||+++++.+..+..+..   .+.+++++..+
T Consensus        87 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  164 (312)
T 4ery_A           87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI  164 (312)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CEEEEEECCCCcEEEEEcCCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence            999999999998776 77899999999999  9999999999999999999999999998887653   34556677899


Q ss_pred             EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911        174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG  253 (356)
Q Consensus       174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  253 (356)
                      ++++.|+.|++||++++..... ....+...+..++|+|+    +.++++++.|+.|++||+...  +.+..+.+|....
T Consensus       165 ~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~  237 (312)
T 4ery_A          165 VSSSYDGLCRIWDTASGQCLKT-LIDDDNPPVSFVKFSPN----GKYILAATLDNTLKLWDYSKG--KCLKTYTGHKNEK  237 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEE-ECCSSCCCEEEEEECTT----SSEEEEEETTTEEEEEETTTT--EEEEEECSSCCSS
T ss_pred             EEEeCCCcEEEEECCCCceeeE-EeccCCCceEEEEECCC----CCEEEEEcCCCeEEEEECCCC--cEEEEEEecCCce
Confidence            9999999999999998754322 22345567899999999    789999999999999999765  4566666665411


Q ss_pred             CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911        254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                      .        .+......+++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++
T Consensus       238 ~--------~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  298 (312)
T 4ery_A          238 Y--------CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA  298 (312)
T ss_dssp             S--------CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred             E--------EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence            0        233333446789999999999999999999999999999999999999999999999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-45  Score=308.79  Aligned_cols=288  Identities=18%  Similarity=0.216  Sum_probs=232.0

Q ss_pred             CCCceEEeCCCCC-CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceee-eeeccCCcceeEEEEccCCCeEEEEc
Q psy12911         18 PNKDFEVVSPPED-SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIP-KSMQGMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        18 ~~~~~~~~~~h~~-~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      ....+..+.+|.+ .|.+++|+|++   ++||+|+.|++|+|||+..+..... ....+|...|.+++|+|++++|++++
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g---~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s   80 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAG---TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS   80 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTS---SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCC---CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE
Confidence            3456778889988 99999999999   9999999999999999987432222 23468999999999999999999999


Q ss_pred             CCCeEEEEEcCCCce--e-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc---eEEEeCCC---eeEEE
Q psy12911         96 CDKTVKCWDLASNQS--M-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP---IMTINLPE---RCYCA  166 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~--~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~---~~~~~  166 (356)
                      .|++|++|++..+..  + .+.+|...|.+++|+  |++++|++|+.|+.|++||++++..   +..+..+.   ..+.+
T Consensus        81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s--p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA--PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW  158 (345)
T ss_dssp             TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred             CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe--CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence            999999999987743  3 377899999999999  9999999999999999999987753   44555544   34556


Q ss_pred             ecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCC----
Q psy12911        167 DVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKD----  242 (356)
Q Consensus       167 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~----  242 (356)
                      ++++..+++++.|+.|++||++............|...|.+++|+|+    +.+|++++.|+.|++|+........    
T Consensus       159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~----g~~l~s~s~D~~v~iW~~~~~~~~~~~~~  234 (345)
T 3fm0_A          159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS----GQRLASCSDDRTVRIWRQYLPGNEQGVAC  234 (345)
T ss_dssp             CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEEEECTTCTTCCCC
T ss_pred             CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC----CCEEEEEeCCCeEEEeccccCCCCcccee
Confidence            67778999999999999999987653333334467889999999999    8899999999999999974322111    


Q ss_pred             ---------cceeee-ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee---------cCCCCCCc
Q psy12911        243 ---------NFTFKC-HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK---------LKPSEAMD  303 (356)
Q Consensus       243 ---------~~~~~~-~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~  303 (356)
                               +..+.+ |..           .|.+++|+|++..|++++.|+.|++|+...+..         .....+|.
T Consensus       235 ~~~~~~~~~~~~~~~~h~~-----------~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~  303 (345)
T 3fm0_A          235 SGSDPSWKCICTLSGFHSR-----------TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHS  303 (345)
T ss_dssp             C---CEEEEEEEECSSCSS-----------CEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSS
T ss_pred             eccCCccceeEEecCCCCC-----------cEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccccc
Confidence                     111111 333           799999999999999999999999999875432         12346899


Q ss_pred             cceEEEEECCCCC-EEEEEeccC
Q psy12911        304 MSISTCALNHNGQ-IFAYAVSYD  325 (356)
Q Consensus       304 ~~v~~~~~s~~~~-~l~~~s~~d  325 (356)
                      ..|++++|+|++. +||+|+.|+
T Consensus       304 ~~V~~v~~~p~~~~~laS~s~Dg  326 (345)
T 3fm0_A          304 QDVNCVAWNPKEPGLLASCSDDG  326 (345)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTS
T ss_pred             CcEeEeEEeCCCceEEEEcCCCC
Confidence            9999999999984 899998655

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.8e-45  Score=303.05  Aligned_cols=281  Identities=17%  Similarity=0.220  Sum_probs=232.7

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc---eeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK---TIPKSMQGMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      ......+.+|.+.|++++|+|++  +++|++|+.|++|++|++.....   .....+.+|...|.+++|+|++++|++++
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~--~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQ--PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSC--TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEEEccccceEEEEEccCCC--ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence            34456789999999999999965  37999999999999999875322   23567889999999999999999999999


Q ss_pred             CCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEEecC----
Q psy12911         96 CDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCADVD----  169 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~----  169 (356)
                      .|++|++||+.+++.+. +.+|...|.+++|+  +++.+|++|+.|++|++||++ ++.+..+..+.. +.++.+.    
T Consensus        85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~  161 (319)
T 3frx_A           85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDID--KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEK  161 (319)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEEC--TTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC--
T ss_pred             CCCEEEEEECCCCCeeEEEccCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCC
Confidence            99999999999998876 78899999999999  999999999999999999986 556666666553 3333332    


Q ss_pred             ----CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911        170 ----YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT  245 (356)
Q Consensus       170 ----~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  245 (356)
                          +..+++++.|+.|++||++.......  ...|...+.+++|+|+    +.++++++.||.|++||+...  +.+..
T Consensus       162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~sp~----g~~l~s~~~dg~i~iwd~~~~--~~~~~  233 (319)
T 3frx_A          162 ADDDSVTIISAGNDKMVKAWNLNQFQIEAD--FIGHNSNINTLTASPD----GTLIASAGKDGEIMLWNLAAK--KAMYT  233 (319)
T ss_dssp             ----CCEEEEEETTSCEEEEETTTTEEEEE--ECCCCSCEEEEEECTT----SSEEEEEETTCEEEEEETTTT--EEEEE
T ss_pred             CCCCccEEEEEeCCCEEEEEECCcchhhee--ecCCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCC--cEEEE
Confidence                23799999999999999987653322  2357889999999999    889999999999999999765  45666


Q ss_pred             eeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC--------CCccceEEEEECCCCCE
Q psy12911        246 FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE--------AMDMSISTCALNHNGQI  317 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~  317 (356)
                      +..+.            .|.+++|+|++.+|++++.+ .+++|++..+..+..+.        .|...+.+++|+|||++
T Consensus       234 ~~~~~------------~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  300 (319)
T 3frx_A          234 LSAQD------------EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT  300 (319)
T ss_dssp             EECCS------------CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred             ecCCC------------cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCE
Confidence            65543            69999999999999988765 59999998776544332        34667999999999999


Q ss_pred             EEEEeccC
Q psy12911        318 FAYAVSYD  325 (356)
Q Consensus       318 l~~~s~~d  325 (356)
                      |++|+.|.
T Consensus       301 l~sg~~Dg  308 (319)
T 3frx_A          301 LFAGYTDN  308 (319)
T ss_dssp             EEEEETTS
T ss_pred             EEEeecCc
Confidence            99998765

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.7e-44  Score=324.97  Aligned_cols=282  Identities=17%  Similarity=0.217  Sum_probs=231.3

Q ss_pred             eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911         22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK  101 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  101 (356)
                      ...+.+|.+.|++++|+|++  +..|++|+.|++|++||..+  ......+.+|...|.+++|+|++++|++++.|++|+
T Consensus       140 ~~~l~gh~~~v~~v~f~p~~--~~~l~s~s~D~~v~lwd~~~--~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~  215 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDFKPSR--PFRIISGSDDNTVAIFEGPP--FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV  215 (611)
T ss_dssp             CBCCCCCSSCEEEEEECSSS--SCEEEEEETTSCEEEEETTT--BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cceecCCCCCceEEEECCCC--CeEEEEEeCCCeEEEEECCC--CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence            44578999999999999998  23699999999999999876  455578899999999999999999999999999999


Q ss_pred             EEEcCCCceeeec--------ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe---------------
Q psy12911        102 CWDLASNQSMQVA--------QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN---------------  158 (356)
Q Consensus       102 vwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------  158 (356)
                      +||+.+++.....        +|.+.|.+++|+  |++++|++++.|++|++||+++++.+..+.               
T Consensus       216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s--pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (611)
T 1nr0_A          216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS--PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT  293 (611)
T ss_dssp             EEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred             EEECCCCcEeeeeccccccccccCCCEEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEc
Confidence            9999988876532        799999999999  999999999999999999999887665543               


Q ss_pred             ----------------------------CCC---eeEEEecCCCeEEEEecCCeEEEEeCCCCcccccccc---------
Q psy12911        159 ----------------------------LPE---RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE---------  198 (356)
Q Consensus       159 ----------------------------~~~---~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---------  198 (356)
                                                  +|.   ..+++++++..+++++.|+.|++||+.++........         
T Consensus       294 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~  373 (611)
T 1nr0_A          294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI  373 (611)
T ss_dssp             SSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEE
T ss_pred             CCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEE
Confidence                                        222   2345566778999999999999999876532110000         


Q ss_pred             -----------------------------------------------------------------------CcccccceE
Q psy12911        199 -----------------------------------------------------------------------SPLKYQNRC  207 (356)
Q Consensus       199 -----------------------------------------------------------------------~~~~~~i~~  207 (356)
                                                                                             ..+...+.+
T Consensus       374 ~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~  453 (611)
T 1nr0_A          374 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSC  453 (611)
T ss_dssp             EECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEE
T ss_pred             EECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceE
Confidence                                                                                   001234678


Q ss_pred             EEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEE
Q psy12911        208 IAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSF  287 (356)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~i  287 (356)
                      ++|+|+    +.++++|+.|+.|++|++.......... .+|..           .|++++|+|+|++|++++.|++|++
T Consensus       454 va~spd----g~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~-----------~v~~v~fspdg~~las~s~d~~v~~  517 (611)
T 1nr0_A          454 VALSND----KQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPA-----------EITSVAFSNNGAFLVATDQSRKVIP  517 (611)
T ss_dssp             EEECTT----SCEEEEEETTSEEEEEEEETTEEEEEEE-EECSS-----------CEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEEeCC----CCEEEEeCCCCeEEEEEccCCceeeeec-cCCCC-----------ceEEEEECCCCCEEEEEcCCCCEEE
Confidence            889998    8899999999999999997643222233 56666           8999999999999999999999999


Q ss_pred             EEcCc-ceecCC--CCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        288 WDKDA-RTKLKP--SEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       288 wd~~~-~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ||+.+ ++.+..  +..|...|++++|+|||++||+|+.|.
T Consensus       518 w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~  558 (611)
T 1nr0_A          518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN  558 (611)
T ss_dssp             EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCC
Confidence            99987 666654  345999999999999999999999665

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.3e-44  Score=307.55  Aligned_cols=276  Identities=18%  Similarity=0.287  Sum_probs=231.5

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCC------------------cceeEEEEccCC
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS------------------EPVLDVAWIDDG   88 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~------------------~~v~~~~~s~~~   88 (356)
                      +|.+.|+|++|+|+|   ++||+|+ ++.++||++.++.  ....+..|.                  ..|.+++|+|++
T Consensus        62 ~h~~~V~~v~fspdg---~~la~g~-~~~v~i~~~~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg  135 (393)
T 1erj_A           62 DHTSVVCCVKFSNDG---EYLATGC-NKTTQVYRVSDGS--LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG  135 (393)
T ss_dssp             ECSSCCCEEEECTTS---SEEEEEC-BSCEEEEETTTCC--EEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred             CCCCEEEEEEECCCC---CEEEEEc-CCcEEEEEecCCC--EEEEecCccccccccccccccccCCCceeEEEEEECCCC
Confidence            599999999999999   9999987 6899999998732  234444332                  249999999999


Q ss_pred             CeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEe
Q psy12911         89 TKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCAD  167 (356)
Q Consensus        89 ~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  167 (356)
                      ++|++|+.|+.|++||+.+++.+. +.+|...|.+++|+  |++.+|++++.|++|++||+++++....+..+..+.++.
T Consensus       136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~  213 (393)
T 1erj_A          136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF--PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA  213 (393)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEc--CCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEE
Confidence            999999999999999999988776 77899999999999  999999999999999999999999888888766555444


Q ss_pred             --c-CCCeEEEEecCCeEEEEeCCCCccccccc-----cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC
Q psy12911        168 --V-DYPLAVVGTAGRGIVLYQLEGKPQEFKKT-----ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN  239 (356)
Q Consensus       168 --~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~  239 (356)
                        + ++..+++++.|+.|++||++++.......     ...|...+.+++|+|+    +..+++++.|+.|++||+....
T Consensus       214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~----g~~l~s~s~d~~v~~wd~~~~~  289 (393)
T 1erj_A          214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD----GQSVVSGSLDRSVKLWNLQNAN  289 (393)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT----SSEEEEEETTSEEEEEEC----
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC----CCEEEEEeCCCEEEEEECCCCC
Confidence              4 56799999999999999998865332221     1356788999999999    8899999999999999996532


Q ss_pred             C----------CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEE
Q psy12911        240 P----------KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTC  309 (356)
Q Consensus       240 ~----------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  309 (356)
                      .          .....+.+|..           .|.+++|+|++.+|++|+.||.|++||+.+++++..+.+|.+.|.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v  358 (393)
T 1erj_A          290 NKSDSKTPNSGTCEVTYIGHKD-----------FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV  358 (393)
T ss_dssp             -----------CEEEEEECCSS-----------CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CcccccCCCCCcceEEEecccC-----------cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence            1          22345566766           89999999999999999999999999999999999999999999999


Q ss_pred             EECC------CCCEEEEEeccC
Q psy12911        310 ALNH------NGQIFAYAVSYD  325 (356)
Q Consensus       310 ~~s~------~~~~l~~~s~~d  325 (356)
                      +|++      ++++|++|+.|.
T Consensus       359 ~~~~~~~~~p~~~~l~sgs~Dg  380 (393)
T 1erj_A          359 AVANGSSLGPEYNVFATGSGDC  380 (393)
T ss_dssp             EECSSCTTCTTCEEEEEEETTS
T ss_pred             EecCCcCcCCCCCEEEEECCCC
Confidence            9986      789999999765

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-43  Score=298.91  Aligned_cols=280  Identities=15%  Similarity=0.191  Sum_probs=223.8

Q ss_pred             CCceEEeCCCCCCeeEEEe-----cC-CCCCceEEEEEeCCCeEEEEeccCCC-----ceeeeeeccCCcceeEEEEccC
Q psy12911         19 NKDFEVVSPPEDSISCMAF-----SP-STLPQYFLIAGSWDNNVRCWEVEPNG-----KTIPKSMQGMSEPVLDVAWIDD   87 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~-----~~-~~~~~~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~   87 (356)
                      ......+.+|.+.|++++|     ++ ++   ++|++|+.|++|+|||+....     ......+.+|...|.+++|+|+
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~---~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~   87 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDS---PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE   87 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCC---CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCC---CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence            3456678999999999999     66 77   999999999999999997532     2344678899999999999999


Q ss_pred             CCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe---CC-Ce
Q psy12911         88 GTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN---LP-ER  162 (356)
Q Consensus        88 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~-~~  162 (356)
                      +.+|++++.|++|++||+++++.+. +.+|...|.+++|+  |++++|++++.|+.|++||+.. +......   .+ ..
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s--p~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~  164 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS--PDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDW  164 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC--SSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSC
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC--CCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCce
Confidence            9999999999999999999988776 77899999999999  9999999999999999999973 3333322   12 22


Q ss_pred             eE--EEecCC----------CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeE
Q psy12911        163 CY--CADVDY----------PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRV  230 (356)
Q Consensus       163 ~~--~~~~~~----------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i  230 (356)
                      +.  .+++.+          ..+++++.|+.|++||....   .......|...+.+++|+|+    +.+|++++.|+.|
T Consensus       165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~h~~~v~~~~~s~~----g~~l~sgs~dg~v  237 (343)
T 2xzm_R          165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ---IRYTFKAHESNVNHLSISPN----GKYIATGGKDKKL  237 (343)
T ss_dssp             EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE---EEEEEECCSSCEEEEEECTT----SSEEEEEETTCEE
T ss_pred             eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc---eeEEEcCccccceEEEECCC----CCEEEEEcCCCeE
Confidence            33  333333          57999999999999995432   12223357788999999999    8899999999999


Q ss_pred             EEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC--CCC--------
Q psy12911        231 AIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK--PSE--------  300 (356)
Q Consensus       231 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~--------  300 (356)
                      ++||+.... .....+. +..           .|.+++|+|++.+++++ .|+.|++||+.+++...  .+.        
T Consensus       238 ~iwd~~~~~-~~~~~~~-~~~-----------~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~  303 (343)
T 2xzm_R          238 LIWDILNLT-YPQREFD-AGS-----------TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAE  303 (343)
T ss_dssp             EEEESSCCS-SCSEEEE-CSS-----------CEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred             EEEECCCCc-ccceeec-CCC-----------cEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence            999995432 2233332 222           79999999999888765 57789999998776543  332        


Q ss_pred             ---CCccceEEEEECCCCCEEEEEeccC
Q psy12911        301 ---AMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       301 ---~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                         +|...|.+++|+|+|++|++|+.|+
T Consensus       304 ~~~~~~~~v~~~~~sp~g~~l~sg~~Dg  331 (343)
T 2xzm_R          304 GQKGKNPQCTSLAWNALGKKLFAGFTDG  331 (343)
T ss_dssp             TBCCSCCCEEEEEECSSSCCEEEEETTS
T ss_pred             hhcCCCCceEEEEECCCCCeEEEecCCc
Confidence               6788999999999999999998765

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.4e-44  Score=326.77  Aligned_cols=283  Identities=16%  Similarity=0.196  Sum_probs=230.2

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec-------cCCcceeEEEEccCCCe
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-------GMSEPVLDVAWIDDGTK   90 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~   90 (356)
                      +.+....+.+|.+.|++++|+|++   ++||+|+.|++|+|||+.++.  ....+.       +|.+.|.+++|+|++++
T Consensus       179 ~~~~~~~l~~H~~~V~~v~fspdg---~~las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~~~V~~v~~spdg~~  253 (611)
T 1nr0_A          179 PFKFKSTFGEHTKFVHSVRYNPDG---SLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTK  253 (611)
T ss_dssp             TBEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred             CCeEeeeeccccCceEEEEECCCC---CEEEEEECCCcEEEEECCCCc--EeeeeccccccccccCCCEEEEEECCCCCE
Confidence            345567789999999999999999   999999999999999998732  223442       79999999999999999


Q ss_pred             EEEEcCCCeEEEEEcCCCceee--------------------------------------------ecccCCCeeEEEEE
Q psy12911         91 VFMAGCDKTVKCWDLASNQSMQ--------------------------------------------VAQHDAPVKTCHWI  126 (356)
Q Consensus        91 l~~~~~dg~i~vwd~~~~~~~~--------------------------------------------~~~~~~~v~~~~~~  126 (356)
                      |++++.|++|++||+.+++.+.                                            +.+|...|.+++|+
T Consensus       254 l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s  333 (611)
T 1nr0_A          254 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS  333 (611)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             EEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe
Confidence            9999999999999998765432                                            24688999999999


Q ss_pred             eCCCCCeEEEEECCCeEEEEeCCCCCceEEEe------------------------------------------------
Q psy12911        127 KAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN------------------------------------------------  158 (356)
Q Consensus       127 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------------------------------------  158 (356)
                        |++++|++++.|+.|++||+.+++....+.                                                
T Consensus       334 --pdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~  411 (611)
T 1nr0_A          334 --ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS  411 (611)
T ss_dssp             --TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECS
T ss_pred             --CCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecC
Confidence              999999999999999999998765332210                                                


Q ss_pred             -------------------------------------CCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcc
Q psy12911        159 -------------------------------------LPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPL  201 (356)
Q Consensus       159 -------------------------------------~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  201 (356)
                                                           .....+++++++.++++++.|+.|++||+.+........ ..|
T Consensus       412 ~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h  490 (611)
T 1nr0_A          412 SQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVH  490 (611)
T ss_dssp             SCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EEC
T ss_pred             CCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCC
Confidence                                                 000234566778899999999999999998754321122 457


Q ss_pred             cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc--eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE
Q psy12911        202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF--TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV  279 (356)
Q Consensus       202 ~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~  279 (356)
                      ...|.+++|+|+    +.+|++++.|+.+++|++.... +...  .+..|..           .|++++|+|+|++||+|
T Consensus       491 ~~~v~~v~fspd----g~~las~s~d~~v~~w~~~~~~-~~~~~~~~~~H~~-----------~V~~v~fspdg~~lasg  554 (611)
T 1nr0_A          491 PAEITSVAFSNN----GAFLVATDQSRKVIPYSVANNF-ELAHTNSWTFHTA-----------KVACVSWSPDNVRLATG  554 (611)
T ss_dssp             SSCEEEEEECTT----SSEEEEEETTSCEEEEEGGGTT-EESCCCCCCCCSS-----------CEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEECCC----CCEEEEEcCCCCEEEEEcCCCC-ceeeeeeeeeccc-----------ceeEEEECCCCCEEEEE
Confidence            788999999999    8899999999999999997521 2222  2333665           89999999999999999


Q ss_pred             cCCCeEEEEEcCcce-ec-CCCCCC-ccceEEEEECCCCCEEEEEeccC
Q psy12911        280 GSEGTFSFWDKDART-KL-KPSEAM-DMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       280 ~~dg~i~iwd~~~~~-~~-~~~~~~-~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +.|++|++||+.++. .+ ..+.+| ...|++++|+|+++ |++++.|.
T Consensus       555 s~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~  602 (611)
T 1nr0_A          555 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDS  602 (611)
T ss_dssp             ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTS
T ss_pred             ECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCC
Confidence            999999999998765 33 567789 89999999999999 99988665

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-43  Score=294.70  Aligned_cols=286  Identities=15%  Similarity=0.170  Sum_probs=218.6

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee-cc-CCcceeEEEEccCCCeEEEEcC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM-QG-MSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      .+.+..+.+|.+.|.+++|+|+     +||+|+.|++|++||+..+.......+ .+ |...|.+++|+|++++|++++.
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~-----~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~   78 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG-----ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF   78 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT-----EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred             cccceeeccCCCceeeeccCCC-----EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence            4567788999999999999875     799999999999999987433444445 34 9999999999999999999999


Q ss_pred             CCeEEEEEcCCC-------ceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC----CceEEEeCCCe--
Q psy12911         97 DKTVKCWDLASN-------QSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP----QPIMTINLPER--  162 (356)
Q Consensus        97 dg~i~vwd~~~~-------~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~--  162 (356)
                      |++|++||+...       +... +.+|...|.+++|+  |++++|++|+.|++|++||++..    +++..+..+..  
T Consensus        79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v  156 (330)
T 2hes_X           79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS--NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV  156 (330)
T ss_dssp             TSCEEEEEC-------CCCEEEEEEC----CEEEEEEC--TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred             CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEEC--CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence            999999998532       2333 67899999999999  99999999999999999999532    34566666543  


Q ss_pred             -eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911        163 -CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK  241 (356)
Q Consensus       163 -~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~  241 (356)
                       .+.+++++..+++++.|++|++||.+............|...|.+++|+|+..  +..+++++.|+.|++|++......
T Consensus       157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~l~s~s~D~~v~iw~~~~~~~~  234 (330)
T 2hes_X          157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG--VFRLCSGSDDSTVRVWKYMGDDED  234 (330)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS--SCEEEEEETTSCEEEEEEEEECTT
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC--eeEEEEEeCCCeEEEEEecCCCcc
Confidence             44556677899999999999999987653222333346788999999999732  357999999999999999654211


Q ss_pred             C------cceeee-ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce--ec-CCCCCCcc-ceEEEE
Q psy12911        242 D------NFTFKC-HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART--KL-KPSEAMDM-SISTCA  310 (356)
Q Consensus       242 ~------~~~~~~-~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~--~~-~~~~~~~~-~v~~~~  310 (356)
                      .      ...+.. |..           .|.+++|++++ +|++++.||.|++||..+++  .+ ..+.+|.. .|.+++
T Consensus       235 ~~~~~~~~~~~~~~h~~-----------~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~  302 (330)
T 2hes_X          235 DQQEWVCEAILPDVHKR-----------QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVK  302 (330)
T ss_dssp             SCEEEEEEEECCSCCSS-----------CEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEE
T ss_pred             ccceeEEeeeccccccc-----------ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEE
Confidence            1      112222 443           89999999765 89999999999999998763  23 23467877 899999


Q ss_pred             ECC--CCCEEEEEeccC
Q psy12911        311 LNH--NGQIFAYAVSYD  325 (356)
Q Consensus       311 ~s~--~~~~l~~~s~~d  325 (356)
                      |+|  ++++||+|+.|+
T Consensus       303 ~~~~~~~~~las~s~Dg  319 (330)
T 2hes_X          303 WLELNGKTILATGGDDG  319 (330)
T ss_dssp             EC-----CCEEEEETTS
T ss_pred             EecCCCceEEEEecCCC
Confidence            999  789999998765

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.3e-42  Score=311.18  Aligned_cols=276  Identities=23%  Similarity=0.298  Sum_probs=239.9

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      .+....+.+|...|.+++|+|++   ++|++++.|+.|++||...  . ....+.+|...|.+++|+|++++|++++.|+
T Consensus       293 ~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~~~d~~i~~w~~~~--~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  366 (577)
T 2ymu_A          293 GQLLQTLTGHSSSVWGVAFSPDG---QTIASASDDKTVKLWNRNG--Q-HLQTLTGHSSSVWGVAFSPDGQTIASASDDK  366 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTS--C-EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CcEEEEEecCCCCeEEEEECCCC---CEEEEEeCCCeEEEEeCCC--C-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            34567788999999999999999   9999999999999999865  2 3366788999999999999999999999999


Q ss_pred             eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEE
Q psy12911         99 TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVV  175 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  175 (356)
                      .|++||........+..|...|.+++|+  |++++|++++.|+.|++||. +++.+..+..+..   .+.+++++..+++
T Consensus       367 ~v~~~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~  443 (577)
T 2ymu_A          367 TVKLWNRNGQLLQTLTGHSSSVRGVAFS--PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIAS  443 (577)
T ss_dssp             EEEEEETTCCEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCCEEEEecCCCCCeEEEEEC--CCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence            9999997554444578899999999999  99999999999999999995 6777888876653   3556677789999


Q ss_pred             EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      ++.|+.|++||.....   ......+...+.+++|+|+    +.++++++.|+.|++|+.+.   +.+..+.+|..    
T Consensus       444 ~~~d~~v~~w~~~~~~---~~~~~~~~~~v~~~~~spd----~~~las~~~d~~i~iw~~~~---~~~~~~~~h~~----  509 (577)
T 2ymu_A          444 ASDDKTVKLWNRNGQL---LQTLTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRNG---QLLQTLTGHSS----  509 (577)
T ss_dssp             EETTSEEEEEETTSCE---EEEEECCSSCEEEEEECTT----SCEEEEEETTSEEEEEETTS---CEEEEEECCSS----
T ss_pred             EcCCCEEEEEECCCCE---EEEEcCCCCCEEEEEEcCC----CCEEEEEeCCCEEEEEcCCC---CEEEEEeCCCC----
Confidence            9999999999976532   1222357788999999999    88999999999999999642   66788888887    


Q ss_pred             CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                             .|++++|+|+|++||+++.||.|++||. +++++..+.+|.+.|++++|+|||++|++++.|.
T Consensus       510 -------~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~  571 (577)
T 2ymu_A          510 -------SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDK  571 (577)
T ss_dssp             -------CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             -------CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence                   8999999999999999999999999996 5788899999999999999999999999998654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-42  Score=290.92  Aligned_cols=283  Identities=12%  Similarity=0.127  Sum_probs=242.0

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      ........+.+|.+.|++++|+|++   ++|++|+.||.|++||+.+  ......+.+|...|.+++|+|++++|++++.
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   94 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYNKEG---DLLFSCSKDSSASVWYSLN--GERLGTLDGHTGTIWSIDVDCFTKYCVTGSA   94 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEECTTS---CEEEEEESSSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccEEEEEeeceEEEEEEcCCC---CEEEEEeCCCEEEEEeCCC--chhhhhhhhcCCcEEEEEEcCCCCEEEEEeC
Confidence            3445556788999999999999999   9999999999999999987  3455788899999999999999999999999


Q ss_pred             CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC-----CeEEEEeCCCCCc-----------eEEEeCC
Q psy12911         97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD-----KTLKFWDLRTPQP-----------IMTINLP  160 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~-----------~~~~~~~  160 (356)
                      ||.|++||+.+++.+....+...+.+++|+  +++.++++++.+     +.|++||+.....           +..+..+
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  172 (369)
T 3zwl_B           95 DYSIKLWDVSNGQCVATWKSPVPVKRVEFS--PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH  172 (369)
T ss_dssp             TTEEEEEETTTCCEEEEEECSSCEEEEEEC--TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred             CCeEEEEECCCCcEEEEeecCCCeEEEEEc--cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence            999999999999988866699999999999  999999999999     9999999987643           2222222


Q ss_pred             -----CeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911        161 -----ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV  235 (356)
Q Consensus       161 -----~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  235 (356)
                           ...+++++++..+++++.++.|++||+++........ ..+...+.+++|+|+    +..+++++.|+.|++||+
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI-DLHEKSISDMQFSPD----LTYFITSSRDTNSFLVDV  247 (369)
T ss_dssp             TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE-ECCSSCEEEEEECTT----SSEEEEEETTSEEEEEET
T ss_pred             cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE-ecCCCceeEEEECCC----CCEEEEecCCceEEEEEC
Confidence                 2345566677899999999999999999843333322 246788999999999    889999999999999999


Q ss_pred             CCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC--------------eEEEEEcCcceecCCCCC
Q psy12911        236 NPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG--------------TFSFWDKDARTKLKPSEA  301 (356)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~  301 (356)
                      +..  +.+..+. +..           .+..++|+|+++++++++.++              .+++||+.+++.+..+.+
T Consensus       248 ~~~--~~~~~~~-~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  313 (369)
T 3zwl_B          248 STL--QVLKKYE-TDC-----------PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG  313 (369)
T ss_dssp             TTC--CEEEEEE-CSS-----------CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC
T ss_pred             CCC--ceeeeec-CCC-----------CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec
Confidence            765  4455555 333           799999999999999999988              899999999999999999


Q ss_pred             CccceEEEEECCCCCEEEEEeccC
Q psy12911        302 MDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       302 ~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      |...|++++|+|++++|++++.|+
T Consensus       314 ~~~~v~~~~~s~~~~~l~s~~~dg  337 (369)
T 3zwl_B          314 HFGPLNTVAISPQGTSYASGGEDG  337 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCC
Confidence            999999999999999999998665

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.1e-41  Score=286.61  Aligned_cols=289  Identities=16%  Similarity=0.232  Sum_probs=230.6

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC---ceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG---KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      ....+++||.+.|++|+|+|++  +++||||+.|++|+|||+....   ......+.+|...|.+++|+|++++|++++.
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~--~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQF--PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTC--TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEECCccCCEEEEEEeCCC--CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            3445789999999999999984  3899999999999999997643   2345678899999999999999999999999


Q ss_pred             CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE-eCCC-e--eEEEecCC-
Q psy12911         97 DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI-NLPE-R--CYCADVDY-  170 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~-~--~~~~~~~~-  170 (356)
                      |+.|++|+........ ...+...+..+.++  +++.+|++++.|+.+++||+......... ..+. .  ...+.... 
T Consensus       107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  184 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS--SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS  184 (340)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred             cccceEEeecccceeeeecCCCCceeEEEEe--ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence            9999999999887766 56677888888888  99999999999999999998765443322 2222 2  33344433 


Q ss_pred             -CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee
Q psy12911        171 -PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH  249 (356)
Q Consensus       171 -~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  249 (356)
                       ..+++++.|+.|++||+++......  ...+...|.+++|+|+    +.++++++.|+.|++||++..  +.+..+..+
T Consensus       185 ~~~~~s~~~d~~i~i~d~~~~~~~~~--~~~h~~~v~~~~~s~~----~~~l~s~s~Dg~i~iwd~~~~--~~~~~~~~~  256 (340)
T 4aow_A          185 NPIIVSCGWDKLVKVWNLANCKLKTN--HIGHTGYLNTVTVSPD----GSLCASGGKDGQAMLWDLNEG--KHLYTLDGG  256 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTT----SSEEEEEETTCEEEEEETTTT--EEEEEEECS
T ss_pred             CcEEEEEcCCCEEEEEECCCCceeeE--ecCCCCcEEEEEECCC----CCEEEEEeCCCeEEEEEeccC--ceeeeecCC
Confidence             4678899999999999998754332  2357789999999999    889999999999999999765  455566554


Q ss_pred             cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC---------CCCCccceEEEEECCCCCEEEE
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP---------SEAMDMSISTCALNHNGQIFAY  320 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~~  320 (356)
                      .            .|.+++|+|++.++ +++.|+.|++||++++..+..         ..+|...|++++|+|||++|++
T Consensus       257 ~------------~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  323 (340)
T 4aow_A          257 D------------IINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA  323 (340)
T ss_dssp             S------------CEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred             c------------eEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence            4            69999999987655 555799999999988765443         3468889999999999999999


Q ss_pred             EeccCCcCCCccCCCC
Q psy12911        321 AVSYDWSKGHEHNNPN  336 (356)
Q Consensus       321 ~s~~d~~~~~~~~~~~  336 (356)
                      |+.|.   ...+|+..
T Consensus       324 gs~Dg---~v~iW~~~  336 (340)
T 4aow_A          324 GYTDN---LVRVWQVT  336 (340)
T ss_dssp             EETTS---CEEEEEEE
T ss_pred             EeCCC---EEEEEeCC
Confidence            98654   34445443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.3e-42  Score=291.66  Aligned_cols=284  Identities=15%  Similarity=0.241  Sum_probs=229.4

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeC---CCeEEEEeccCCCceeeeeeccCCcceeEEEEccC---CCeEE
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSW---DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD---GTKVF   92 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~   92 (356)
                      .....++.+|.+.|.+++|+|++  ..++++|+.   |+.|+|||+.++.... ....+|...|.+++|+|+   +++|+
T Consensus         8 ~~~~~~~~~h~~~v~~~~~~p~~--~~l~~~~s~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~   84 (357)
T 3i2n_A            8 QIIAHIQKGFNYTVFDCKWVPCS--AKFVTMGNFARGTGVIQLYEIQHGDLKL-LREIEKAKPIKCGTFGATSLQQRYLA   84 (357)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTS--SEEEEEEC--CCCEEEEEEEECSSSEEE-EEEEEESSCEEEEECTTCCTTTCCEE
T ss_pred             HHhhhhccCCCCceEEEEEcCCC--ceEEEecCccCCCcEEEEEeCCCCcccc-eeeecccCcEEEEEEcCCCCCCceEE
Confidence            33445667899999999999998  345566665   9999999998843332 334479999999999998   69999


Q ss_pred             EEcCCCeEEEEEcCCCc-eee-ecccCCCeeEEEEEe----CCCCCeEEEEECCCeEEEEeCCCCC-ceEEEeCCC----
Q psy12911         93 MAGCDKTVKCWDLASNQ-SMQ-VAQHDAPVKTCHWIK----APNYTCLMTGSWDKTLKFWDLRTPQ-PIMTINLPE----  161 (356)
Q Consensus        93 ~~~~dg~i~vwd~~~~~-~~~-~~~~~~~v~~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~----  161 (356)
                      +++.||.|++||+.+++ .+. +.+|...|.++.|.+    .+++++|++++.||.|++||+++++ .+..+..+.    
T Consensus        85 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  164 (357)
T 3i2n_A           85 TGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK  164 (357)
T ss_dssp             EEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred             EecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCC
Confidence            99999999999999887 444 778999999997653    2789999999999999999999987 777776432    


Q ss_pred             -eeEEEe------cCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeec---CCCCCCCeEEEeecCCeEE
Q psy12911        162 -RCYCAD------VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFR---DKKKQPAGYGLGSVEGRVA  231 (356)
Q Consensus       162 -~~~~~~------~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~dg~i~  231 (356)
                       .+.++.      +++..+++++.|+.|++||+++.....   ...+...+.+++|+|   +    +..+++++.||.|+
T Consensus       165 ~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~v~~~~~~~~~~~----~~~l~~~~~dg~i~  237 (357)
T 3i2n_A          165 RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW---ETNIKNGVCSLEFDRKDIS----MNKLVATSLEGKFH  237 (357)
T ss_dssp             CCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE---EEECSSCEEEEEESCSSSS----CCEEEEEESTTEEE
T ss_pred             CceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee---ecCCCCceEEEEcCCCCCC----CCEEEEECCCCeEE
Confidence             344443      677899999999999999999876422   234678899999999   7    78999999999999


Q ss_pred             EEEeCCCCCCCcceee-----eecCCCCCCCcccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcCcc------------
Q psy12911        232 IQYVNPANPKDNFTFK-----CHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKDAR------------  293 (356)
Q Consensus       232 i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~~~------------  293 (356)
                      +||++..  .....+.     +|..           .|++++|+|+++ +|++++.||.|++||+.++            
T Consensus       238 i~d~~~~--~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~  304 (357)
T 3i2n_A          238 VFDMRTQ--HPTKGFASVSEKAHKS-----------TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIE  304 (357)
T ss_dssp             EEEEEEE--ETTTEEEEEEEECCSS-----------CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCC
T ss_pred             EEeCcCC--CcccceeeeccCCCcC-----------CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCc
Confidence            9999765  3344443     6665           899999999998 8999999999999998754            


Q ss_pred             -------eecCCCCCCccceEEEEECCCCCEEE-EEeccC
Q psy12911        294 -------TKLKPSEAMDMSISTCALNHNGQIFA-YAVSYD  325 (356)
Q Consensus       294 -------~~~~~~~~~~~~v~~~~~s~~~~~l~-~~s~~d  325 (356)
                             +.+..+.+|...|++++|+|++++|+ +++.|.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~  344 (357)
T 3i2n_A          305 MGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ  344 (357)
T ss_dssp             CCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             cccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence                   35566778999999999999999999 566443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-41  Score=292.74  Aligned_cols=249  Identities=16%  Similarity=0.212  Sum_probs=217.8

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      ...+....+.+|.+.|++++|+|++   ++|++|+.|++|+|||+.+  ......+.+|...|.+++|+|++++|++|+.
T Consensus       138 ~~~~~~~~l~~h~~~V~~v~~~~~~---~~l~sgs~D~~i~iwd~~~--~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~  212 (410)
T 1vyh_C          138 ETGDFERTLKGHTDSVQDISFDHSG---KLLASCSADMTIKLWDFQG--FECIRTMHGHDHNVSSVSIMPNGDHIVSASR  212 (410)
T ss_dssp             TTCCCCEEECCCSSCEEEEEECTTS---SEEEEEETTSCCCEEETTS--SCEEECCCCCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCcEEEEEeccCCcEEEEEEcCCC---CEEEEEeCCCeEEEEeCCC--CceeEEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence            3445667889999999999999999   9999999999999999977  4455788999999999999999999999999


Q ss_pred             CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEE--ecC---
Q psy12911         97 DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCA--DVD---  169 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~--~~~---  169 (356)
                      |++|++||+.++.++. +.+|...|.++.++  +++.+|++|+.|+.|++||+++++....+..+.. +.++  .+.   
T Consensus       213 D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  290 (410)
T 1vyh_C          213 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY  290 (410)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGG
T ss_pred             CCeEEEEECCCCcEEEEEeCCCccEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccc
Confidence            9999999999998876 78899999999999  9999999999999999999999999888876653 3333  332   


Q ss_pred             -----------------CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911        170 -----------------YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI  232 (356)
Q Consensus       170 -----------------~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i  232 (356)
                                       +.++++++.|+.|++||++++......  ..|...|.+++|+|+    +.++++++.|+.|++
T Consensus       291 ~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~~~~----g~~l~s~s~D~~i~v  364 (410)
T 1vyh_C          291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL--VGHDNWVRGVLFHSG----GKFILSCADDKTLRV  364 (410)
T ss_dssp             GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECSS----SSCEEEEETTTEEEE
T ss_pred             cchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE--ECCCCcEEEEEEcCC----CCEEEEEeCCCeEEE
Confidence                             457999999999999999987543222  347788999999999    889999999999999


Q ss_pred             EEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        233 QYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      ||+...  +.+..+.+|..           .|++++|+|++.+|++|+.||+|++|+++
T Consensus       365 wd~~~~--~~~~~~~~h~~-----------~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          365 WDYKNK--RCMKTLNAHEH-----------FVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             ECCTTS--CCCEEEECCSS-----------CEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EECCCC--ceEEEEcCCCC-----------cEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999765  67888888887           89999999999999999999999999863

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.1e-41  Score=282.94  Aligned_cols=242  Identities=18%  Similarity=0.218  Sum_probs=198.1

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCcee--eeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEc
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTI--PKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL  105 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  105 (356)
                      |...|.+++|+|++    .|++|+.||+|+|||+.++....  ...+.+|...|++++|+|+|++|++|+.|++|++||+
T Consensus        81 ~~~~v~~~~~s~d~----~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           81 TEAGVADLTWVGER----GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             ESSCEEEEEEETTT----EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cCCCEEEEEEeCCC----eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            56789999999986    68899999999999998854322  2345689999999999999999999999999999999


Q ss_pred             CCCceee-ecccCCCeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeE--EEecCC-CeEEEEe
Q psy12911        106 ASNQSMQ-VAQHDAPVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCY--CADVDY-PLAVVGT  177 (356)
Q Consensus       106 ~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~--~~~~~~-~~~~~~~  177 (356)
                      ++++.+. +.+|...|.+++|+  +++ .+|++++.|++|++||+++++.+..+....   .+.  ++.+.+ .++++++
T Consensus       157 ~~~~~~~~~~~h~~~V~~~~~~--~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          157 AQQVVLSSYRAHAAQVTCVAAS--PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEC--SSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred             CCCcEEEEEcCcCCceEEEEec--CCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence            9999877 78899999999999  776 478999999999999999999888875432   233  344433 4788899


Q ss_pred             cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCC
Q psy12911        178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG  257 (356)
Q Consensus       178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  257 (356)
                      .|+.|++||++++.....  ...|...|.+++|+|++   ..+|++|+.|+.|++||+...   .+..+.+|..      
T Consensus       235 ~dg~v~~wd~~~~~~~~~--~~~h~~~v~~v~fsp~g---~~~lasgs~D~~i~vwd~~~~---~~~~~~~H~~------  300 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCVLS--SAVHSQCVTGLVFSPHS---VPFLASLSEDCSLAVLDSSLS---ELFRSQAHRD------  300 (344)
T ss_dssp             TTSEEEEEESCC--CCEE--EECCSSCEEEEEECSSS---SCCEEEEETTSCEEEECTTCC---EEEEECCCSS------
T ss_pred             cCCcEEEEECCCCcEEEE--EcCCCCCEEEEEEccCC---CeEEEEEeCCCeEEEEECCCC---cEEEEcCCCC------
Confidence            999999999998754332  23577899999999983   357899999999999998764   3456778877      


Q ss_pred             cccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcCcce
Q psy12911        258 VQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKDART  294 (356)
Q Consensus       258 ~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~~~~  294 (356)
                           .|++++|+|+++ +|++++.||+|++|++.+..
T Consensus       301 -----~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          301 -----FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             -----CEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             -----CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence                 899999999985 67899999999999998654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-40  Score=276.91  Aligned_cols=292  Identities=16%  Similarity=0.159  Sum_probs=238.2

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      .+.+....+.+|.+.|++++| |++   ++|++|+.||.|++||+.+  ......+..|...|.+++|+|++++|++++.
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~-~~~---~~l~s~~~dg~v~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   79 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVA-VDD---SKVASVSRDGTVRLWSKDD--QWLGTVVYTGQGFLNSVCYDSEKELLLFGGK   79 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEE-EET---TEEEEEETTSEEEEEEESS--SEEEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred             ccHHHHHHhhCCCCCcEEEEe-cCC---CEEEEEEcCCcEEEEECCC--CEEEEEeecCCccEEEEEECCCCCEEEEecC
Confidence            455778889999999999999 888   8999999999999999976  4555777889999999999999999999999


Q ss_pred             CCeEEEEEcCCCc----eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-e--EEEec-
Q psy12911         97 DKTVKCWDLASNQ----SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-C--YCADV-  168 (356)
Q Consensus        97 dg~i~vwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~--~~~~~-  168 (356)
                      |+.|++|++....    ...+..|...|.++.|.    ++++++++.||.|++||  .++.+..+..+.. +  +.+.+ 
T Consensus        80 dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~  153 (313)
T 3odt_A           80 DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ----DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF  153 (313)
T ss_dssp             TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET
T ss_pred             CCeEEEEEeeecCCCCcccchhhcccCEEEEEec----CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC
Confidence            9999999987653    23367899999999985    56899999999999999  6667777776553 3  33333 


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee
Q psy12911        169 DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC  248 (356)
Q Consensus       169 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~  248 (356)
                      .+..+++++.|+.|++||....   .......+...+.+++++|+    +. +++++.||.|++||++..  +.+..+..
T Consensus       154 ~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~i~~~~~~~~----~~-~~~~~~dg~i~i~d~~~~--~~~~~~~~  223 (313)
T 3odt_A          154 SENKFLTASADKTIKLWQNDKV---IKTFSGIHNDVVRHLAVVDD----GH-FISCSNDGLIKLVDMHTG--DVLRTYEG  223 (313)
T ss_dssp             TTTEEEEEETTSCEEEEETTEE---EEEECSSCSSCEEEEEEEET----TE-EEEEETTSEEEEEETTTC--CEEEEEEC
T ss_pred             CCCEEEEEECCCCEEEEecCce---EEEEeccCcccEEEEEEcCC----Ce-EEEccCCCeEEEEECCch--hhhhhhhc
Confidence            7789999999999999994432   23333347788999999999    55 999999999999999866  66778888


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcC
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSK  328 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~  328 (356)
                      |..           .|.+++|+|++ .|++++.||.|++||+.+++.+..+..|...|.+++|+|+++++ +++.|+   
T Consensus       224 ~~~-----------~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~dg---  287 (313)
T 3odt_A          224 HES-----------FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDII-VGSSDN---  287 (313)
T ss_dssp             CSS-----------CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEE-EEETTS---
T ss_pred             CCc-----------eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEE-EEeCCC---
Confidence            877           89999999999 58899999999999999999999999999999999999999954 565443   


Q ss_pred             CCccCCCCCCceeeeccc
Q psy12911        329 GHEHNNPNKGNAIFLRPC  346 (356)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~  346 (356)
                      ...+|+...+..+....+
T Consensus       288 ~i~iw~~~~~~~~~~~~~  305 (313)
T 3odt_A          288 LVRIFSQEKSRWASEDEI  305 (313)
T ss_dssp             CEEEEESCGGGCCC----
T ss_pred             cEEEEeCCCCceeehhhh
Confidence            445566554444433333

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1e-40  Score=300.39  Aligned_cols=283  Identities=22%  Similarity=0.281  Sum_probs=245.5

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      .+.+..+.+|...|++++|+|++   ++|++++.|+.|++|+...   .....+.+|...|.+++|+|++++|++++.|+
T Consensus       252 ~~~~~~~~~~~~~v~~v~~~~d~---~~l~~~~~d~~i~~w~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~  325 (577)
T 2ymu_A          252 GQLLQTLTGHSSSVNGVAFRPDG---QTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDK  325 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTS---CEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCEEEEEecCCCCEEEEEEcCCC---CEEEEEeCCCEEEEEeCCC---cEEEEEecCCCCeEEEEECCCCCEEEEEeCCC
Confidence            35667788999999999999999   9999999999999999754   34567889999999999999999999999999


Q ss_pred             eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEE
Q psy12911         99 TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVV  175 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  175 (356)
                      .|++||+.......+.+|...+.+++|+  |++++|++++.|+.|++||. +++.+..+..+..   .+++++++..+++
T Consensus       326 ~i~~w~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  402 (577)
T 2ymu_A          326 TVKLWNRNGQHLQTLTGHSSSVWGVAFS--PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS  402 (577)
T ss_dssp             CEEEEETTSCEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             eEEEEeCCCCeeEEEeCCCCCEEEEEEC--CCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence            9999999887777788999999999999  99999999999999999994 6777888876653   4566777889999


Q ss_pred             EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      ++.|+.|++||.....   ......+...+.+++|+|+    +..+++++.|+.+++|+...   +.+..+.+|..    
T Consensus       403 ~~~d~~v~~~~~~~~~---~~~~~~~~~~v~~~~~s~d----~~~l~~~~~d~~v~~w~~~~---~~~~~~~~~~~----  468 (577)
T 2ymu_A          403 ASDDKTVKLWNRNGQL---LQTLTGHSSSVWGVAFSPD----DQTIASASDDKTVKLWNRNG---QLLQTLTGHSS----  468 (577)
T ss_dssp             EETTSEEEEECTTCCE---EEEEECCSSCEEEEEECTT----SSEEEEEETTSEEEEEETTS---CEEEEEECCSS----
T ss_pred             EeCCCEEEEEeCCCCE---EEEecCCCCCeEEEEECCC----CCEEEEEcCCCEEEEEECCC---CEEEEEcCCCC----
Confidence            9999999999975432   1222357788999999999    78999999999999999643   56777888877    


Q ss_pred             CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCC
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNP  335 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~  335 (356)
                             .|.+++|+|++++|++++.|+.|++||. +++++..+.+|...|++++|+|||++||+++.|.   ...+|+.
T Consensus       469 -------~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg---~v~lwd~  537 (577)
T 2ymu_A          469 -------SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK---TVKLWNR  537 (577)
T ss_dssp             -------CEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS---EEEEECT
T ss_pred             -------CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcC---EEEEEeC
Confidence                   8999999999999999999999999995 5788889999999999999999999999998655   3444553

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.8e-41  Score=287.42  Aligned_cols=293  Identities=12%  Similarity=0.108  Sum_probs=231.8

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-CCCeEEEEc
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-DGTKVFMAG   95 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~   95 (356)
                      .+.+....+.+|.+.|++++|+|++  +++|++|+.||.|+|||+.+..........+|...|.+++|+| ++++|++++
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  138 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTH--PTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS  138 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSC--TTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred             cccceEEeccCCCCCEEEEEECCCC--CCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence            3456677889999999999999996  4799999999999999998754444344457999999999999 788999999


Q ss_pred             CCCeEEEEEcCCCceeeecc---cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-e--eEEEecC
Q psy12911         96 CDKTVKCWDLASNQSMQVAQ---HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-R--CYCADVD  169 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~--~~~~~~~  169 (356)
                      .|+.|++||+.+.....+..   |...|.+++|+  +++++|++++.|+.|++||+ +++.+..+..+. .  .+++++.
T Consensus       139 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          139 IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS--VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPR  215 (383)
T ss_dssp             TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEE--TTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSS
T ss_pred             CCCEEEEEECCCCceEEEeccCCCCCCeEEEEEC--CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCC
Confidence            99999999999765544443   45889999999  99999999999999999999 577888887655 3  4455556


Q ss_pred             CC-eEEEEecCCeEEEEeCCCCcccc-ccccCcccccceEEEeec-CCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee
Q psy12911        170 YP-LAVVGTAGRGIVLYQLEGKPQEF-KKTESPLKYQNRCIAIFR-DKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       170 ~~-~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~  246 (356)
                      +. .+++++.|+.|++||+++..... ......+...+.+++|+| +    +..+++++.|+.|++||++..  .....+
T Consensus       216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~~l~~~~~d~~i~iwd~~~~--~~~~~~  289 (383)
T 3ei3_B          216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD----STKLLTTDQRNEIRVYSSYDW--SKPDQI  289 (383)
T ss_dssp             CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTT----SCEEEEEESSSEEEEEETTBT--TSCSEE
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCC----CCEEEEEcCCCcEEEEECCCC--cccccc
Confidence            66 89999999999999998743211 111114778999999999 8    789999999999999999876  445666


Q ss_pred             eeecCCCCC------CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC--CccceEEEEECCCCCEE
Q psy12911        247 KCHRSNGGA------GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA--MDMSISTCALNHNGQIF  318 (356)
Q Consensus       247 ~~~~~~~~~------~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l  318 (356)
                      ..|......      ........+..++|+|++++  +++.||.|++||+.+++.+..+.+  |...+..++|+|++++|
T Consensus       290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l  367 (383)
T 3ei3_B          290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVL  367 (383)
T ss_dssp             EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEE
T ss_pred             ccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEE
Confidence            655431110      00011124556777777776  788999999999999999988886  45678888999999999


Q ss_pred             EEEe
Q psy12911        319 AYAV  322 (356)
Q Consensus       319 ~~~s  322 (356)
                      ++++
T Consensus       368 ~s~s  371 (383)
T 3ei3_B          368 ASGM  371 (383)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.2e-41  Score=279.10  Aligned_cols=243  Identities=16%  Similarity=0.180  Sum_probs=216.6

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      ..+.+|...|.+++|++++   .++++++.|++|++||+.+  ......+..|...+.+++|+|++++|++++.|+.|++
T Consensus        74 ~~l~gh~~~v~~~~~~~~~---~~l~s~s~D~~i~lWd~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i  148 (321)
T 3ow8_A           74 WSLEGHQLGVVSVDISHTL---PIAASSSLDAHIRLWDLEN--GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI  148 (321)
T ss_dssp             EEECCCSSCEEEEEECSSS---SEEEEEETTSEEEEEETTT--TEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEE
T ss_pred             eeeccCCCCEEEEEECCCC---CEEEEEeCCCcEEEEECCC--CCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEE
Confidence            4578999999999999999   9999999999999999987  3445677889999999999999999999999999999


Q ss_pred             EEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEecCCCeEEEEec
Q psy12911        103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCADVDYPLAVVGTA  178 (356)
Q Consensus       103 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  178 (356)
                      |++++++... +..|...|.+++|+  |++++|++|+.||.|++||+++++.+..+..+.   ..+++++++.++++++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~s--pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~  226 (321)
T 3ow8_A          149 FGVESGKKEYSLDTRGKFILSIAYS--PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD  226 (321)
T ss_dssp             EETTTCSEEEEEECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred             EEcCCCceeEEecCCCceEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence            9999988765 67788899999999  999999999999999999999999999988765   35667778889999999


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCc
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGV  258 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (356)
                      |+.|++||++......  ....|...|.+++|+|+    +..+++++.|+.|++||+...  +.+.++.+|..       
T Consensus       227 dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~sp~----~~~l~s~s~D~~v~iwd~~~~--~~~~~~~~h~~-------  291 (321)
T 3ow8_A          227 DGYIKIYDVQHANLAG--TLSGHASWVLNVAFCPD----DTHFVSSSSDKSVKVWDVGTR--TCVHTFFDHQD-------  291 (321)
T ss_dssp             TSCEEEEETTTCCEEE--EECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTT--EEEEEECCCSS-------
T ss_pred             CCeEEEEECCCcceeE--EEcCCCCceEEEEECCC----CCEEEEEeCCCcEEEEeCCCC--EEEEEEcCCCC-------
Confidence            9999999998765432  22357788999999999    789999999999999999765  66778888877       


Q ss_pred             ccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        259 QDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       259 ~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                          .|.+++|+|++++|++++.||.|++||..
T Consensus       292 ----~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          292 ----QVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ----CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             ----cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence                89999999999999999999999999963

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.9e-41  Score=309.05  Aligned_cols=281  Identities=16%  Similarity=0.239  Sum_probs=227.2

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc---eeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK---TIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      +....+++|.+.|++++|+|++  .++|++|+.|++|+||++.....   .....+.+|...|.+++|+|++++|++|+.
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~--~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~  450 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDN--ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW  450 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTC--CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             chhhhcccCCceeEEEEecCCC--CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence            3445688999999999999875  37999999999999999976432   334678899999999999999999999999


Q ss_pred             CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe---CCC-eeEE--EecC
Q psy12911         97 DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN---LPE-RCYC--ADVD  169 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~-~~~~--~~~~  169 (356)
                      |++|++||+.+++... +.+|...|.+++|+  +++++|++++.|++|++||+..........   .|. .+.+  ++++
T Consensus       451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFS--LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred             CCcEEEEECCCCcceeEEeCCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence            9999999999988776 78899999999999  999999999999999999976543322221   222 2444  4444


Q ss_pred             C--CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911        170 Y--PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK  247 (356)
Q Consensus       170 ~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  247 (356)
                      +  ..+++++.|+.|++||+++.....  ....|...|.+++|+|+    +.++++++.||.|++||+...  +.+..+.
T Consensus       529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~--~~~~h~~~v~~v~~spd----g~~l~sg~~Dg~i~iwd~~~~--~~~~~~~  600 (694)
T 3dm0_A          529 TLQPTIVSASWDKTVKVWNLSNCKLRS--TLAGHTGYVSTVAVSPD----GSLCASGGKDGVVLLWDLAEG--KKLYSLE  600 (694)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTT----SSEEEEEETTSBCEEEETTTT--EEEECCB
T ss_pred             CCcceEEEEeCCCeEEEEECCCCcEEE--EEcCCCCCEEEEEEeCC----CCEEEEEeCCCeEEEEECCCC--ceEEEec
Confidence            3  479999999999999998765332  23357889999999999    889999999999999999765  4444444


Q ss_pred             eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC-------------------ccceEE
Q psy12911        248 CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM-------------------DMSIST  308 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~~v~~  308 (356)
                      .+.            .|.+++|+|++.+|++++ |+.|++||+.+++.+..+..+                   ...+++
T Consensus       601 ~~~------------~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (694)
T 3dm0_A          601 ANS------------VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS  667 (694)
T ss_dssp             CSS------------CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred             CCC------------cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence            332            699999999999888775 566999999998876654322                   113789


Q ss_pred             EEECCCCCEEEEEeccC
Q psy12911        309 CALNHNGQIFAYAVSYD  325 (356)
Q Consensus       309 ~~~s~~~~~l~~~s~~d  325 (356)
                      ++|||||++|++|+.|+
T Consensus       668 l~~spdg~~l~sgs~Dg  684 (694)
T 3dm0_A          668 LNWSADGSTLFSGYTDG  684 (694)
T ss_dssp             EEECTTSSEEEEEETTS
T ss_pred             EEEcCCCCEEEEEcCCC
Confidence            99999999999999766

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.5e-41  Score=288.90  Aligned_cols=283  Identities=11%  Similarity=0.146  Sum_probs=236.0

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC----ceeeeeeccCCcceeEEEEccC----C---
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG----KTIPKSMQGMSEPVLDVAWIDD----G---   88 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~~~v~~~~~s~~----~---   88 (356)
                      .....+.+|.+.|++++|+|     ++|++|+.||.|++|++....    ......+.+|...|.+++|+|+    +   
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~-----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~   81 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN-----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL   81 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS-----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC-----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccc
Confidence            34567889999999999988     389999999999999998844    2345778899999999999999    9   


Q ss_pred             CeEEEEcCCCeEEEEEcCCCce-----e-eeccc-----CCCeeEEEEEeC--CCCCe-EEEEECCCeEEEEeCCC----
Q psy12911         89 TKVFMAGCDKTVKCWDLASNQS-----M-QVAQH-----DAPVKTCHWIKA--PNYTC-LMTGSWDKTLKFWDLRT----  150 (356)
Q Consensus        89 ~~l~~~~~dg~i~vwd~~~~~~-----~-~~~~~-----~~~v~~~~~~~~--~~~~~-l~~~~~dg~i~iwd~~~----  150 (356)
                      ++|++++.|+.|++||+.+++.     . .+..|     ...|.+++|++.  +++.+ |++++.||.|++||+++    
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  161 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  161 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence            9999999999999999998884     4 46677     599999999844  57788 99999999999999998    


Q ss_pred             --CCceE-----EEeC--------CC--eeEEEecCCCeEEEEecCCeEEEEeCCCCcccccccc-Ccc---cccceEEE
Q psy12911        151 --PQPIM-----TINL--------PE--RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE-SPL---KYQNRCIA  209 (356)
Q Consensus       151 --~~~~~-----~~~~--------~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~---~~~i~~~~  209 (356)
                        ++.+.     .+..        ..  ..+.+++++ .+++++.|+.|++||+++......... ..+   ...+.+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~  240 (397)
T 1sq9_A          162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  240 (397)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence              76666     6642        22  355666677 999999999999999998653322211 115   77899999


Q ss_pred             eecCCCCCCCeEEEeecC---CeEEEEEeCCCCCCCcceeee-------------ecCCCCCCCcccccceEEEEEeCCC
Q psy12911        210 IFRDKKKQPAGYGLGSVE---GRVAIQYVNPANPKDNFTFKC-------------HRSNGGAGGVQDIYAVNGIVFHPVH  273 (356)
Q Consensus       210 ~~~~~~~~~~~~~~~~~d---g~i~i~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~i~~sp~~  273 (356)
                      |+|+    +..+++++.|   +.|++||++..  +.+..+..             |..           .|.+++|+|++
T Consensus       241 ~~~~----~~~l~~~~~d~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~  303 (397)
T 1sq9_A          241 FSPQ----GSLLAIAHDSNSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSS-----------WVMSLSFNDSG  303 (397)
T ss_dssp             ECSS----TTEEEEEEEETTEEEEEEEETTTC--CEEEEECBC--------CCBSBSS-----------CEEEEEECSSS
T ss_pred             ECCC----CCEEEEEecCCCCceEEEEECCCC--cccceeccCcccccccccccccCC-----------cEEEEEECCCC
Confidence            9999    7899999999   99999999865  56667766             665           89999999999


Q ss_pred             CEEEEEcCCCeEEEEEcCcceecCCCC------CC---------------ccceEEEEECCCC----------CEEEEEe
Q psy12911        274 GTLATVGSEGTFSFWDKDARTKLKPSE------AM---------------DMSISTCALNHNG----------QIFAYAV  322 (356)
Q Consensus       274 ~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~---------------~~~v~~~~~s~~~----------~~l~~~s  322 (356)
                      ++|++++.||.|++||+.+++.+..+.      +|               ...|++++|+|++          ++|++++
T Consensus       304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~  383 (397)
T 1sq9_A          304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC  383 (397)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred             CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence            999999999999999999999988888      77               8999999999999          7999998


Q ss_pred             ccC
Q psy12911        323 SYD  325 (356)
Q Consensus       323 ~~d  325 (356)
                      .|+
T Consensus       384 ~dg  386 (397)
T 1sq9_A          384 LDR  386 (397)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-40  Score=279.82  Aligned_cols=249  Identities=14%  Similarity=0.223  Sum_probs=216.7

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC--ceeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      ..+....+..|...|.+++|+|++   ++|++|+.|+.|++|++.+..  ......+.+|...|.++.|++++ .+++++
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s  161 (340)
T 1got_B           86 TTNKVHAIPLRSSWVMTCAYAPSG---NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSS  161 (340)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTS---SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEE
T ss_pred             CCCcceEeecCCccEEEEEECCCC---CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEE
Confidence            345566778899999999999999   999999999999999998643  24456788999999999999887 589999


Q ss_pred             CCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCC
Q psy12911         96 CDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYP  171 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~  171 (356)
                      .|++|++||+.+++.+. +.+|...|.+++|+  |++.++++|+.|+.|++||+++++.+..+..+..   .+++++++.
T Consensus       162 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~  239 (340)
T 1got_B          162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLA--PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN  239 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCceEEEEEC--CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC
Confidence            99999999999998876 77899999999999  9999999999999999999999999999987653   456667788


Q ss_pred             eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS  251 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  251 (356)
                      .+++++.|+.|++||++............+...+.+++|+|+    +.++++|+.|+.|++||+...  ..+..+.+|..
T Consensus       240 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~g~~d~~i~vwd~~~~--~~~~~~~~h~~  313 (340)
T 1got_B          240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS----GRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDN  313 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT----SSEEEEEETTSEEEEEETTTC--CEEEEEECCSS
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC----CCEEEEECCCCeEEEEEcccC--cEeeEeecCCC
Confidence            999999999999999998754433332334457899999999    889999999999999999765  56778888887


Q ss_pred             CCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911        252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD  289 (356)
Q Consensus       252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd  289 (356)
                                 .|.+++|+|+|.+|++|+.||.|+|||
T Consensus       314 -----------~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          314 -----------RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -----------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -----------cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence                       899999999999999999999999997

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.4e-41  Score=293.82  Aligned_cols=301  Identities=10%  Similarity=0.078  Sum_probs=228.1

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-CCCeEEEEcC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-DGTKVFMAGC   96 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~   96 (356)
                      ..+......+|...|+||+|+|..  +++||+|+.||.|+|||+..........+.+|.+.|++|+|+| ++++|++++.
T Consensus       108 ~~~~~~~~~~~~~~V~~l~~~P~~--~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~  185 (435)
T 4e54_B          108 SYRILQKAAPFDRRATSLAWHPTH--PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM  185 (435)
T ss_dssp             TTTSCCEEEECSSCEEEEEECSSC--TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS
T ss_pred             ceeecccCCCCCCCEEEEEEeCCC--CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC
Confidence            445556677899999999999954  3799999999999999998755555566788999999999998 7889999999


Q ss_pred             CCeEEEEEcCCCceeeec---ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEE--ecCC
Q psy12911         97 DKTVKCWDLASNQSMQVA---QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCA--DVDY  170 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~--~~~~  170 (356)
                      ||+|++||++++....+.   .+...+.+++|+  +++.+|++|+.||.|++||++. +.+..+..+. .+.++  ++.+
T Consensus       186 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          186 EGTTRLQDFKGNILRVFASSDTINIWFCSLDVS--ASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCC  262 (435)
T ss_dssp             SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE--TTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTC
T ss_pred             CCEEEEeeccCCceeEEeccCCCCccEEEEEEC--CCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCC
Confidence            999999999887655433   344567899999  9999999999999999999864 5556666554 34444  4455


Q ss_pred             C-eEEEEecCCeEEEEeCCCCcccccc-ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee
Q psy12911        171 P-LAVVGTAGRGIVLYQLEGKPQEFKK-TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC  248 (356)
Q Consensus       171 ~-~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~  248 (356)
                      + ++++++.|+.|++||++........ ....|...|.+++|+|+    +.+|++++.||.|++|++...  .....+..
T Consensus       263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spd----g~~l~s~~~D~~i~iwd~~~~--~~~~~~~~  336 (435)
T 4e54_B          263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD----GARLLTTDQKSEIRVYSASQW--DCPLGLIP  336 (435)
T ss_dssp             SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTT----SSEEEEEESSSCEEEEESSSS--SSEEEECC
T ss_pred             ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCC----CCeeEEEcCCCEEEEEECCCC--ccceEEec
Confidence            4 6778999999999999876543222 23457789999999999    889999999999999999765  44444544


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEEEEEc------------CCCeEEEEEcCcceecCCCC-CCccceEEE-EECCC
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG------------SEGTFSFWDKDARTKLKPSE-AMDMSISTC-ALNHN  314 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~-~~s~~  314 (356)
                      |.......     ..+....|+|++.++++++            .++.|++||..+++.+..+. +|...|.++ +|+|+
T Consensus       337 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspd  411 (435)
T 4e54_B          337 HPHRHFQH-----LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPM  411 (435)
T ss_dssp             CCCCCCSS-----SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTT
T ss_pred             cccccccc-----ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCC
Confidence            43211100     0233455666666555553            34679999999999887754 678888887 69999


Q ss_pred             CCEEEEEeccCCcCCCccCCCCCC
Q psy12911        315 GQIFAYAVSYDWSKGHEHNNPNKG  338 (356)
Q Consensus       315 ~~~l~~~s~~d~~~~~~~~~~~~~  338 (356)
                      |++|++|+ |+   ...+|+.+.+
T Consensus       412 g~~lasg~-d~---~i~iW~~~~g  431 (435)
T 4e54_B          412 GDTLASAM-GY---HILIWSQQEA  431 (435)
T ss_dssp             SSCEEEEC-SS---EEEECCCC--
T ss_pred             CCEEEEEc-CC---cEEEEECCcC
Confidence            99999876 33   3566776643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-40  Score=273.55  Aligned_cols=253  Identities=16%  Similarity=0.180  Sum_probs=202.1

Q ss_pred             eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc--CCCeEEEEcCCCe
Q psy12911         22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID--DGTKVFMAGCDKT   99 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~   99 (356)
                      +.++.+|.+.|++++|+|+|   ++||+|+.|++|+|||+..........+.+|.++|.+++|++  ++++|++|+.|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g---~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~   78 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYG---KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTS---SEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred             ceeccCCcCceEEEEECCCC---CEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence            35678999999999999999   999999999999999997643456678999999999999986  4889999999999


Q ss_pred             EEEEEcCCCce--e-eecccCCCeeEEEEEeCCC--CCeEEEEECCCeEEEEeCCCCCc--eEEEeCCC-eeEEEecC--
Q psy12911        100 VKCWDLASNQS--M-QVAQHDAPVKTCHWIKAPN--YTCLMTGSWDKTLKFWDLRTPQP--IMTINLPE-RCYCADVD--  169 (356)
Q Consensus       100 i~vwd~~~~~~--~-~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~-~~~~~~~~--  169 (356)
                      |++||+++++.  + .+..|...|.+++|+  |+  +.+|++++.|+.|++||++++..  ...+..+. .+.++.+.  
T Consensus        79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~--p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B           79 VMIWKEENGRWSQIAVHAVHSASVNSVQWA--PHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (297)
T ss_dssp             EEEEEBSSSCBCCCEEECCCSSCEEEEEEC--CGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred             EEEEEcCCCceEEEEEeecCCCceeEEEeC--cCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence            99999998742  2 356799999999999  65  88999999999999999987642  34455444 34444333  


Q ss_pred             -------------CCeEEEEecCCeEEEEeCCCCccc--cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEE
Q psy12911        170 -------------YPLAVVGTAGRGIVLYQLEGKPQE--FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQY  234 (356)
Q Consensus       170 -------------~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  234 (356)
                                   +..+++++.|+.|++||++.....  .......|...|.+++|+|+.. .+.++++++.|+.|++|+
T Consensus       157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~-~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-LRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-SSEEEEEEETTSCEEEEE
T ss_pred             cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC-CceEEEEEECCCcEEEEE
Confidence                         358999999999999999875422  2222346788999999999831 136899999999999999


Q ss_pred             eCCCCCCCcc-ee--eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        235 VNPANPKDNF-TF--KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       235 ~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      ++........ .+  ..|..           .|.+++|+|+|++||+++.||.|++|+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          236 QDNEQGPWKKTLLKEEKFPD-----------VLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             ESSTTSCCEEEESSSSCCSS-----------CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             eCCCCCccceeeeecccCCC-----------cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            9764321111 11  23333           79999999999999999999999999976

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.9e-40  Score=276.07  Aligned_cols=273  Identities=14%  Similarity=0.234  Sum_probs=231.5

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCce-eeeeec--cCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKT-IPKSMQ--GMSEPVLDVAWIDDGTKVFMAGCDKTVK  101 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~  101 (356)
                      ..+|.+.|++++|+|++   ++|++++ ||.|++|++...... ....+.  .|...|.+++|+|++++|++++.|+.|+
T Consensus        47 ~~~h~~~v~~~~~~~~~---~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  122 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPT---RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS  122 (337)
T ss_dssp             EECCSSCCCEEEECSSS---SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred             eccCCCceEEEEEecCC---cEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence            34799999999999999   9999998 999999999874321 222222  7899999999999999999999999999


Q ss_pred             EEEcCCCce--e-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-e--eEEEecCCCeEEE
Q psy12911        102 CWDLASNQS--M-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-R--CYCADVDYPLAVV  175 (356)
Q Consensus       102 vwd~~~~~~--~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~  175 (356)
                      +||+.+++.  . .+..|...|.+++|+  ++++++++++.||.|++||+++++.+..+..+. .  .+.+++++..+++
T Consensus       123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  200 (337)
T 1gxr_A          123 IWDLAAPTPRIKAELTSSAPACYALAIS--PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEECCCCCcceeeecccCCCceEEEEEC--CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence            999998873  2 367789999999999  999999999999999999999999888887654 3  4455667789999


Q ss_pred             EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      ++.|+.|++||+++.......   .+...+.+++|+|+    +..+++++.++.+++|+++...   ...+..|..    
T Consensus       201 ~~~dg~i~~~d~~~~~~~~~~---~~~~~v~~~~~s~~----~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~----  266 (337)
T 1gxr_A          201 GGLDNTVRSWDLREGRQLQQH---DFTSQIFSLGYCPT----GEWLAVGMESSNVEVLHVNKPD---KYQLHLHES----  266 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEE---ECSSCEEEEEECTT----SSEEEEEETTSCEEEEETTSSC---EEEECCCSS----
T ss_pred             EecCCcEEEEECCCCceEeee---cCCCceEEEEECCC----CCEEEEEcCCCcEEEEECCCCC---eEEEcCCcc----
Confidence            999999999999987543332   35678999999999    7899999999999999997653   345566665    


Q ss_pred             CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                             .|.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.|+
T Consensus       267 -------~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg  328 (337)
T 1gxr_A          267 -------CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             -------CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             -------ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCC
Confidence                   8999999999999999999999999999998877443 4788999999999999999998765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-41  Score=292.64  Aligned_cols=285  Identities=10%  Similarity=0.119  Sum_probs=237.0

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC--CceeeeeeccCCcceeEEEEccC-CCeEEEEcCCCeEEEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN--GKTIPKSMQGMSEPVLDVAWIDD-GTKVFMAGCDKTVKCW  103 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw  103 (356)
                      .|...|++++|+|++   .+|++|+.||.|++|++...  +......+.+|...|.+++|+|+ +++|++++.|+.|++|
T Consensus        65 ~~~~~v~~~~~s~~~---~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  141 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNN---KIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW  141 (416)
T ss_dssp             CCSSCEEEEEECSSS---SCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred             ecCCceEEEEECCCC---CeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence            588999999999999   99999999999999999862  23455778899999999999998 8999999999999999


Q ss_pred             EcCCCc------eee----ecccCCCeeEEEEEeCCC-CCeEEEEECCCeEEEEeCCCCCceEEEeCC-------Cee--
Q psy12911        104 DLASNQ------SMQ----VAQHDAPVKTCHWIKAPN-YTCLMTGSWDKTLKFWDLRTPQPIMTINLP-------ERC--  163 (356)
Q Consensus       104 d~~~~~------~~~----~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~--  163 (356)
                      |+.+++      ...    ...|...|.+++|+  ++ +.+|++++.||.|++||+++++.+..+..+       ..+  
T Consensus       142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (416)
T 2pm9_A          142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWN--QSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV  219 (416)
T ss_dssp             BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEEC--SSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred             ECCCCccccccccccccccccCCCCCeeEEEeC--CCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence            999876      222    35789999999999  77 789999999999999999999988888764       334  


Q ss_pred             EEEecCC-CeEEEEecCC---eEEEEeCCCCccccccccCcccccceEEEeec-CCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        164 YCADVDY-PLAVVGTAGR---GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFR-DKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       164 ~~~~~~~-~~~~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                      +.+++++ ..+++++.++   .|++||++............+...+.+++|+| +    +.++++++.|+.|++||++..
T Consensus       220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~~l~s~~~dg~v~~wd~~~~  295 (416)
T 2pm9_A          220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD----EHLLLSSGRDNTVLLWNPESA  295 (416)
T ss_dssp             EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC----SSCEEEEESSSEEEEECSSSC
T ss_pred             EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCC----CCeEEEEeCCCCEEEeeCCCC
Confidence            4445554 4788899998   99999999864443333325778999999999 6    789999999999999999776


Q ss_pred             CCCCcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcceecCCCCC----------------
Q psy12911        239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDARTKLKPSEA----------------  301 (356)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------  301 (356)
                        +.+..+..|..           .|.+++|+|++ .+|++++.||.|++||+.+++.......                
T Consensus       296 --~~~~~~~~~~~-----------~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (416)
T 2pm9_A          296 --EQLSQFPARGN-----------WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNV  362 (416)
T ss_dssp             --CEEEEEECSSS-----------CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC------------------
T ss_pred             --ccceeecCCCC-----------ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccc
Confidence              66788888877           89999999999 8999999999999999987764433221                


Q ss_pred             -------------------CccceEEEEECCCCCEEEEEeccCCcCCCccCCCC
Q psy12911        302 -------------------MDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPN  336 (356)
Q Consensus       302 -------------------~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~  336 (356)
                                         |..++.+++|+|||++|++++.|   ....+|+..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d---~~v~~w~~~  413 (416)
T 2pm9_A          363 SREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDG---KGVSITNPK  413 (416)
T ss_dssp             ----CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTS---SCBCCBCCC
T ss_pred             cccccccccccccccCCccccCCccceEEeeCCeEEEEeCCC---CeEEEEEec
Confidence                               66788899999999999999854   345556654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.6e-40  Score=274.87  Aligned_cols=249  Identities=15%  Similarity=0.239  Sum_probs=211.5

Q ss_pred             eeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEE
Q psy12911         67 TIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF  145 (356)
Q Consensus        67 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i  145 (356)
                      .+.+.+.+|.+.|.+++|+|++++|++++.||+|++||+.+++.+. +..|..+|.+++|+  +++++|++|+.|+.|++
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~s~d~~i~v   81 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI--ARKNWIIVGSDDFRIRV   81 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--GGGTEEEEEETTSEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEe--CCCCEEEEECCCCEEEE
Confidence            3456788999999999999999999999999999999999988776 77899999999999  99999999999999999


Q ss_pred             EeCCCCCceEEEeCCCe---eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEE
Q psy12911        146 WDLRTPQPIMTINLPER---CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYG  222 (356)
Q Consensus       146 wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  222 (356)
                      ||+.+++.+..+..|..   .++++++++.+++++.|++|++||++++..... ....|...|.+++|+|..   +..++
T Consensus        82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~-~~~~h~~~v~~v~~~p~~---~~~l~  157 (304)
T 2ynn_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ-TFEGHEHFVMCVAFNPKD---PSTFA  157 (304)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE-EECCCCSCEEEEEECTTC---TTEEE
T ss_pred             EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh-hhcccCCcEEEEEECCCC---CCEEE
Confidence            99999999999987763   455666778999999999999999987643322 233678889999999942   67899


Q ss_pred             EeecCCeEEEEEeCCCCCCCcceee-eecCCCCCCCcccccceEEEEEeC--CCCEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911        223 LGSVEGRVAIQYVNPANPKDNFTFK-CHRSNGGAGGVQDIYAVNGIVFHP--VHGTLATVGSEGTFSFWDKDARTKLKPS  299 (356)
Q Consensus       223 ~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~sp--~~~~l~s~~~dg~i~iwd~~~~~~~~~~  299 (356)
                      +|+.|+.|++||+...  .....+. .|..           .+..++|+|  ++.+|++|+.|++|++||+.+++++..+
T Consensus       158 sgs~D~~v~iwd~~~~--~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~  224 (304)
T 2ynn_A          158 SGCLDRTVKVWSLGQS--TPNFTLTTGQER-----------GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL  224 (304)
T ss_dssp             EEETTSEEEEEETTCS--SCSEEEECCCTT-----------CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEeCCCeEEEEECCCC--CccceeccCCcC-----------cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence            9999999999999765  3344443 2333           789999987  6789999999999999999999999999


Q ss_pred             CCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCC
Q psy12911        300 EAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNK  337 (356)
Q Consensus       300 ~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~  337 (356)
                      .+|...|.+++|+|++++|++|+.|+   ...+|+...
T Consensus       225 ~~h~~~v~~~~~~p~~~~l~s~s~Dg---~i~iWd~~~  259 (304)
T 2ynn_A          225 EGHMSNVSFAVFHPTLPIIISGSEDG---TLKIWNSST  259 (304)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTT
T ss_pred             CCCCCCEEEEEECCCCCEEEEEcCCC---eEEEEECCC
Confidence            99999999999999999999999765   344455443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.2e-40  Score=281.10  Aligned_cols=279  Identities=13%  Similarity=0.115  Sum_probs=229.5

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  103 (356)
                      ++..|.++|++++|+|++   ++|++|+.|+.|++||+.+........+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus         3 ~~~~~~~~i~~~~~s~~~---~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDR---TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EEESCSSCCCEEEECTTS---SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             eecccCCCeEEEEECCCC---CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence            355699999999999999   99999999999999999884333667888999999999999999999999999999999


Q ss_pred             EcCCCceee---ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc---eEEEeC--CCe--eEEEecCCCeE
Q psy12911        104 DLASNQSMQ---VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP---IMTINL--PER--CYCADVDYPLA  173 (356)
Q Consensus       104 d~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~--~~~--~~~~~~~~~~~  173 (356)
                      |+.+++...   ...|...|.+++|+  +++++|++++.|+.|++||++.++.   ...+..  ...  .+.+.+++..+
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  157 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWA--PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL  157 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEEC--TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEEC--CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence            999887433   46799999999999  9999999999999999999998874   333322  223  44555667799


Q ss_pred             EEEecCCeEEEEeCCCCc----------------cccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        174 VVGTAGRGIVLYQLEGKP----------------QEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       174 ~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                      ++++.|+.|++||++...                .........+...+.+++|+|+    +..+++++.|+.|++||++.
T Consensus       158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~i~d~~~  233 (372)
T 1k8k_C          158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN----GSRVAWVSHDSTVCLADADK  233 (372)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS----SSEEEEEETTTEEEEEEGGG
T ss_pred             EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC----CCEEEEEeCCCEEEEEECCC
Confidence            999999999999975211                1111222256778999999999    78999999999999999986


Q ss_pred             CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc--ce---------------------
Q psy12911        238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA--RT---------------------  294 (356)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~--~~---------------------  294 (356)
                      .  +.+..+..|..           +|.+++|+|++.+|+++ .|+.|++|++.+  ++                     
T Consensus       234 ~--~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (372)
T 1k8k_C          234 K--MAVATLASETL-----------PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR  299 (372)
T ss_dssp             T--TEEEEEECSSC-----------CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHH
T ss_pred             C--ceeEEEccCCC-----------CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchh
Confidence            6  56777888776           89999999999999888 899999999987  42                     


Q ss_pred             -----------ec------CCC-CCCccceEEEEEC-CCC---CEEEEEeccC
Q psy12911        295 -----------KL------KPS-EAMDMSISTCALN-HNG---QIFAYAVSYD  325 (356)
Q Consensus       295 -----------~~------~~~-~~~~~~v~~~~~s-~~~---~~l~~~s~~d  325 (356)
                                 ..      ..+ .+|...|++++|+ ++|   ++|++++.|+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg  352 (372)
T 1k8k_C          300 ERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG  352 (372)
T ss_dssp             HHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS
T ss_pred             hhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCC
Confidence                       10      333 4899999999966 676   9999998665

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-40  Score=287.56  Aligned_cols=299  Identities=13%  Similarity=0.105  Sum_probs=233.4

Q ss_pred             CceEEe-CCCCCCeeEEEecC-CCCCceEEEEEeCCCeEEEEeccC---CCce-eeeeeccCCcceeEEEEccCCCeEEE
Q psy12911         20 KDFEVV-SPPEDSISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEP---NGKT-IPKSMQGMSEPVLDVAWIDDGTKVFM   93 (356)
Q Consensus        20 ~~~~~~-~~h~~~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~---~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~   93 (356)
                      +.+..+ .+|.+.|++++|+| ++   ++|++|+.||+|+|||+.+   +... ....+ .|...|.+++|+|++++|++
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s  128 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGET---PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV  128 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSS---CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred             eEEeeeccCCCCceEEEEECCCCC---CEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence            445566 89999999999999 88   9999999999999999875   2211 11222 59999999999999999999


Q ss_pred             EcCCCeEEEEEcC---CCceeee-----------cc--cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE
Q psy12911         94 AGCDKTVKCWDLA---SNQSMQV-----------AQ--HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI  157 (356)
Q Consensus        94 ~~~dg~i~vwd~~---~~~~~~~-----------~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  157 (356)
                      ++.||.|++||+.   .++....           ..  +...+.++.+...+++.+|++++.|+.|++||+++++.+..+
T Consensus       129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  208 (437)
T 3gre_A          129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII  208 (437)
T ss_dssp             EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence            9999999999995   4443321           12  567788888555589999999999999999999999999999


Q ss_pred             eCC---Ce--eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911        158 NLP---ER--CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI  232 (356)
Q Consensus       158 ~~~---~~--~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i  232 (356)
                      ..+   ..  .+++++++..+++++.|+.|++||++.+.... .....+...+.+++++|....++..+++++.||.|++
T Consensus       209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i  287 (437)
T 3gre_A          209 ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR-SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI  287 (437)
T ss_dssp             ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE-EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred             ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE-EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence            863   33  44555677899999999999999999864332 2222456789999877764444789999999999999


Q ss_pred             EEeCCCCCCCcceeeeecCCCC---------------CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC
Q psy12911        233 QYVNPANPKDNFTFKCHRSNGG---------------AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK  297 (356)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~  297 (356)
                      ||++..  +.+..+.+|.....               ..+..+...|++++|+ ++++|++|+.||.|++||+.+++.+.
T Consensus       288 wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          288 WNFVKG--HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             EETTTT--EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred             EEcCCC--cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence            999765  44555555532111               0111244479999999 77999999999999999999887766


Q ss_pred             CCCC-------------------------------------CccceEEEEECCC--CCEEEEEeccCC
Q psy12911        298 PSEA-------------------------------------MDMSISTCALNHN--GQIFAYAVSYDW  326 (356)
Q Consensus       298 ~~~~-------------------------------------~~~~v~~~~~s~~--~~~l~~~s~~d~  326 (356)
                      .+.+                                     |.+.|++++|+++  +.+|++|+.|+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~  432 (437)
T 3gre_A          365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGL  432 (437)
T ss_dssp             EEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSC
T ss_pred             EEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCce
Confidence            5554                                     8889999999998  789999987653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.4e-40  Score=277.28  Aligned_cols=253  Identities=16%  Similarity=0.189  Sum_probs=216.7

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC----ceeeeeeccCCcceeEEEEccCCCeEE
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG----KTIPKSMQGMSEPVLDVAWIDDGTKVF   92 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~   92 (356)
                      .+.+....+..|...|.+++|+|++   .+|++|+.|+.+++|++....    ......+.+|...|.+++|+|++..|+
T Consensus        94 ~~~~~~~~~~~~~~~v~~~~~sp~g---~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  170 (354)
T 2pbi_B           94 FTTNKEHAVTMPCTWVMACAYAPSG---CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQIL  170 (354)
T ss_dssp             TTCCEEEEEECSSSCCCEEEECTTS---SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEE
T ss_pred             CCCCcceEEecCCCCEEEEEECCCC---CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEE
Confidence            3445566677899999999999999   999999999999999986531    233456778999999999999999999


Q ss_pred             EEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEec
Q psy12911         93 MAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADV  168 (356)
Q Consensus        93 ~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~  168 (356)
                      +++.|++|++||+++++.+. +.+|...|.+++|+|.+++.+|++|+.||.|++||+++++++..+..+..   .+++++
T Consensus       171 t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p  250 (354)
T 2pbi_B          171 TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP  250 (354)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             EEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC
Confidence            99999999999999998876 77899999999999555788999999999999999999999999987653   455666


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee
Q psy12911        169 DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC  248 (356)
Q Consensus       169 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~  248 (356)
                      ++..+++++.|++|++||++............+...+.+++|+|+    +.++++++.|+.|++||+...  ..+..+.+
T Consensus       251 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~----g~~l~~g~~d~~i~vwd~~~~--~~~~~l~~  324 (354)
T 2pbi_B          251 SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS----GRLLFAGYNDYTINVWDVLKG--SRVSILFG  324 (354)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT----SSEEEEEETTSCEEEEETTTC--SEEEEECC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC----CCEEEEEECCCcEEEEECCCC--ceEEEEEC
Confidence            778999999999999999998754333323233457889999999    889999999999999999765  56677888


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD  289 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd  289 (356)
                      |..           .|++++|+|+|++|++|+.||+|++|+
T Consensus       325 h~~-----------~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          325 HEN-----------RVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CSS-----------CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCC-----------cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            887           899999999999999999999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-40  Score=282.44  Aligned_cols=280  Identities=14%  Similarity=0.159  Sum_probs=226.5

Q ss_pred             EEeCCCCCCeeEEEecCC---CCCceEEEEEeCCCeEEEEeccCCCceeeeeec-----cCCcceeEEEEccC----CCe
Q psy12911         23 EVVSPPEDSISCMAFSPS---TLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-----GMSEPVLDVAWIDD----GTK   90 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~---~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~----~~~   90 (356)
                      .+..+|.+.|++++|+|+   +  ...+++++.++.|++||+.+++.  ...+.     .|...|.+++|+|+    +++
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~--~~~~~~~~~~~~v~vw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   87 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEG--DPLVFATVGSNRVTLYECHSQGE--IRLLQSYVDADADENFYTCAWTYDSNTSHPL   87 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTT--SCEEEEEEETTEEEEEEECGGGC--EEEEEEEECSCTTCCEEEEEEEECTTTCCEE
T ss_pred             EeecCCCCceEEEEEecccCCC--CceEEEECCCCEEEEEEcCCCcE--EEeeeeccccCCCCcEEEEEeccCCCCCCCE
Confidence            456799999999999984   3  25677777778999999986332  23333     26688999999998    669


Q ss_pred             EEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEE---eCCC-ee-
Q psy12911         91 VFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTI---NLPE-RC-  163 (356)
Q Consensus        91 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~-~~-  163 (356)
                      |++++.||.|++||+.+++.+. +.+|...|.+++|+  | ++.+|++++.||.|++||+++++.+..+   ..+. .+ 
T Consensus        88 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  165 (366)
T 3k26_A           88 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH--PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL  165 (366)
T ss_dssp             EEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEEC--SSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEE
T ss_pred             EEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEEC--CCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCcee
Confidence            9999999999999999988876 66799999999999  7 8999999999999999999999988887   3333 34 


Q ss_pred             -EEEecCCCeEEEEecCCeEEEEeCCCCcccccc--------------------------ccCcccccceEEEeecCCCC
Q psy12911        164 -YCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKK--------------------------TESPLKYQNRCIAIFRDKKK  216 (356)
Q Consensus       164 -~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--------------------------~~~~~~~~i~~~~~~~~~~~  216 (356)
                       +.+++++..+++++.|+.|++||+++.......                          ....+...+.+++|+.    
T Consensus       166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----  241 (366)
T 3k26_A          166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG----  241 (366)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET----
T ss_pred             EEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcC----
Confidence             445566779999999999999999876432111                          0112678899999983    


Q ss_pred             CCCeEEEeecCCeEEEEEeCCCCC------------CCcceeeeecCCCCCCCcccccceEEEEEeCC--CCEEEEEcCC
Q psy12911        217 QPAGYGLGSVEGRVAIQYVNPANP------------KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV--HGTLATVGSE  282 (356)
Q Consensus       217 ~~~~~~~~~~dg~i~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~--~~~l~s~~~d  282 (356)
                        ..+++++.|+.|++||+.....            ..+..+..|..           .|++++|+|+  +++|++++.|
T Consensus       242 --~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~~~l~~~~~d  308 (366)
T 3k26_A          242 --DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-----------DIWYMRFSMDFWQKMLALGNQV  308 (366)
T ss_dssp             --TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-----------CSSCCCCEECTTSSEEEEECTT
T ss_pred             --CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC-----------cEEEEEEcCCCCCcEEEEEecC
Confidence              4899999999999999976532            12445555555           7999999999  9999999999


Q ss_pred             CeEEEEEcCcceecC----CCCCC--ccceEEEEECCCCCEEEEEeccC
Q psy12911        283 GTFSFWDKDARTKLK----PSEAM--DMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       283 g~i~iwd~~~~~~~~----~~~~~--~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      |.|++||+.+++...    .+..|  ...|++++|+|++++|++++.|+
T Consensus       309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  357 (366)
T 3k26_A          309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA  357 (366)
T ss_dssp             SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC
Confidence            999999999886544    66777  78999999999999999998765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.5e-40  Score=284.28  Aligned_cols=275  Identities=13%  Similarity=0.127  Sum_probs=224.7

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ  109 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  109 (356)
                      ..+....|+|++   ++|++|+.||.|++||+.+  ......+.+|...|++++|+|++++|++++.|+.|++||+.+++
T Consensus        98 ~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  172 (420)
T 3vl1_A           98 DYTAVDTAKLQM---RRFILGTTEGDIKVLDSNF--NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS  172 (420)
T ss_dssp             CEEEEEEECSSS---CEEEEEETTSCEEEECTTS--CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CceEEEEEecCC---CEEEEEECCCCEEEEeCCC--cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            455566789998   9999999999999999987  44556778999999999999999999999999999999999988


Q ss_pred             eee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----ee---------------------
Q psy12911        110 SMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----RC---------------------  163 (356)
Q Consensus       110 ~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~---------------------  163 (356)
                      .+. +.+|...|.+++|+  |++++|++++.|+.|++||+++++.+..+..+.    .+                     
T Consensus       173 ~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          173 NPRTLIGHRATVTDIAII--DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             CCEEEECCSSCEEEEEEE--TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             CceEEcCCCCcEEEEEEc--CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence            776 77899999999999  999999999999999999999999988887532    11                     


Q ss_pred             --EEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCC-eEEEeecCCeEEEEEeCCCCC
Q psy12911        164 --YCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPA-GYGLGSVEGRVAIQYVNPANP  240 (356)
Q Consensus       164 --~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~dg~i~i~~~~~~~~  240 (356)
                        +.+++++..+++++.|+.|++||+++....... ...+...+.+++|+|+    +. ++++++.||.|++||++... 
T Consensus       251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~----~~~~l~~g~~dg~i~vwd~~~~~-  324 (420)
T 3vl1_A          251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL-PSKFTCSCNSLTVDGN----NANYIYAGYENGMLAQWDLRSPE-  324 (420)
T ss_dssp             CTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE-CCTTSSCEEEEEECSS----CTTEEEEEETTSEEEEEETTCTT-
T ss_pred             cceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc-ccccCCCceeEEEeCC----CCCEEEEEeCCCeEEEEEcCCCc-
Confidence              223445679999999999999999987544333 3356788999999999    66 99999999999999998653 


Q ss_pred             CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee---------cCCCCCCccceEEEEE
Q psy12911        241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK---------LKPSEAMDMSISTCAL  311 (356)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~  311 (356)
                      ..+..+..|..          ..|.++.+ +++++|++++.||.|++|++...+.         ...+..|.+.|.+++|
T Consensus       325 ~~~~~~~~~~~----------~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  393 (420)
T 3vl1_A          325 CPVGEFLINEG----------TPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCY  393 (420)
T ss_dssp             SCSEEEEESTT----------SCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEE
T ss_pred             CchhhhhccCC----------CCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEE
Confidence            34666776433          16888855 5788999999999999999876422         1234567889999999


Q ss_pred             CCCCC---EEEEEeccCCcC
Q psy12911        312 NHNGQ---IFAYAVSYDWSK  328 (356)
Q Consensus       312 s~~~~---~l~~~s~~d~~~  328 (356)
                      +|+++   .|++++.++...
T Consensus       394 s~~~~~~g~l~a~g~~g~~~  413 (420)
T 3vl1_A          394 VSDDESNGEVLEVGKNNFCA  413 (420)
T ss_dssp             ECCSSSSCEEEEEETTTEEE
T ss_pred             ccCCCCcceEEEEcCCceEE
Confidence            99999   666666666433

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-40  Score=284.36  Aligned_cols=275  Identities=16%  Similarity=0.192  Sum_probs=228.6

Q ss_pred             CCCCCCeeEEEecCCCCCce-EEEEEeCCCeEEEEec----cCCCc----eeeeeecc----------CCcceeEEEEcc
Q psy12911         26 SPPEDSISCMAFSPSTLPQY-FLIAGSWDNNVRCWEV----EPNGK----TIPKSMQG----------MSEPVLDVAWID   86 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~~~~~~-~l~~~~~dg~i~vw~~----~~~~~----~~~~~~~~----------~~~~v~~~~~s~   86 (356)
                      ..|.+.|++++|+|++   + +||+|+.||.|++|++    .++..    .....+..          |...|++++|+|
T Consensus        42 ~~~~~~v~~~~~s~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  118 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLD---ESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH  118 (425)
T ss_dssp             EEECSCCSEEEECSSC---TTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred             eeccCceEEEEECCCC---CcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence            4466999999999999   8 9999999999999999    66331    02233332          688999999999


Q ss_pred             CCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe----
Q psy12911         87 DGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER----  162 (356)
Q Consensus        87 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----  162 (356)
                      ++++|++++.||.|++||........+..|...|.+++|+  |++++|++++.|+.|++||+.+++.+..+..+..    
T Consensus       119 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  196 (425)
T 1r5m_A          119 DGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWN--KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS  196 (425)
T ss_dssp             TSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEEC--TTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEEC--CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence            9999999999999999995444444478899999999999  9999999999999999999999988888876543    


Q ss_pred             ------------eEEEecC-CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCe
Q psy12911        163 ------------CYCADVD-YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGR  229 (356)
Q Consensus       163 ------------~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~  229 (356)
                                  +.++.+. ...+++++.++.|++||++.......  ...+...+.+++|+|+    +..+++++.|+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~----~~~l~~~~~d~~  270 (425)
T 1r5m_A          197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGK--LIGHHGPISVLEFNDT----NKLLLSASDDGT  270 (425)
T ss_dssp             ---------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEE--ECCCSSCEEEEEEETT----TTEEEEEETTSC
T ss_pred             eeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeee--eccCCCceEEEEECCC----CCEEEEEcCCCE
Confidence                        3333322 25788999999999999998743322  2256788999999999    789999999999


Q ss_pred             EEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEE
Q psy12911        230 VAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTC  309 (356)
Q Consensus       230 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  309 (356)
                      |++|+++..  +....+..|..           .|.+++|+|++ +|++++.||.|++||+.+++.+..+..|...|.++
T Consensus       271 i~i~d~~~~--~~~~~~~~~~~-----------~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~  336 (425)
T 1r5m_A          271 LRIWHGGNG--NSQNCFYGHSQ-----------SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAG  336 (425)
T ss_dssp             EEEECSSSB--SCSEEECCCSS-----------CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred             EEEEECCCC--ccceEecCCCc-----------cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEE
Confidence            999999765  56777777776           89999999999 99999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEEeccC
Q psy12911        310 ALNHNGQIFAYAVSYD  325 (356)
Q Consensus       310 ~~s~~~~~l~~~s~~d  325 (356)
                      +|+|++++|++++.++
T Consensus       337 ~~s~~~~~l~~~~~dg  352 (425)
T 1r5m_A          337 RISQDGQKYAVAFMDG  352 (425)
T ss_dssp             EECTTSSEEEEEETTS
T ss_pred             EEcCCCCEEEEEECCC
Confidence            9999999999998765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.2e-40  Score=277.07  Aligned_cols=254  Identities=19%  Similarity=0.193  Sum_probs=196.5

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc--CCCeEEEEcCCCeEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID--DGTKVFMAGCDKTVK  101 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~  101 (356)
                      ++.+|.+.|++++|+|++   ++||+|+.|++|+|||+.++.......+.+|..+|.+++|++  ++++|++|+.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g---~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYG---TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECGGG---CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcCCC---CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence            467899999999999999   999999999999999998744445678899999999999986  488999999999999


Q ss_pred             EEEcCCCce--e-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce---EEEeCCC---eeEEEecC---
Q psy12911        102 CWDLASNQS--M-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI---MTINLPE---RCYCADVD---  169 (356)
Q Consensus       102 vwd~~~~~~--~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~---~~~~~~~~---  169 (356)
                      +||+++++.  . .+.+|...|.+++|+|..++.+|++|+.|+.|++||++.+...   ..+..+.   ..+.+++.   
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            999998742  2 3678999999999993223889999999999999999876432   2222222   22333333   


Q ss_pred             --------------CCeEEEEecCCeEEEEeCCCCcc-ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEE
Q psy12911        170 --------------YPLAVVGTAGRGIVLYQLEGKPQ-EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQY  234 (356)
Q Consensus       170 --------------~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  234 (356)
                                    +..+++++.|+.|++||++.... ........|...|.+++|+|+....+..|++++.|+.|++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                          35799999999999999975421 122233467788999999998433347899999999999999


Q ss_pred             eCCCCC--CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        235 VNPANP--KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       235 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      ++....  .....+..|..           .|.+++|+|++++||+++.||+|++|+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~-----------~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          245 CDDASSNTWSPKLLHKFND-----------VVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CSSTTCCCCBCCEEEECSS-----------CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             ccCccccchhhhhhhcCCC-----------cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            975321  12334556655           89999999999999999999999999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-39  Score=273.58  Aligned_cols=256  Identities=18%  Similarity=0.311  Sum_probs=204.2

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  103 (356)
                      ...+|.+.|.+++|+|++   ++|++|+.|++|+||++..........+.+|...|.+++|+|++++|++++.|++|++|
T Consensus        56 ~~~~h~~~v~~~~~sp~g---~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iw  132 (345)
T 3fm0_A           56 LSEGHQRTVRKVAWSPCG---NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW  132 (345)
T ss_dssp             ECSSCSSCEEEEEECTTS---SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eccccCCcEEEEEECCCC---CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEE
Confidence            347899999999999999   99999999999999999875545667889999999999999999999999999999999


Q ss_pred             EcCCCce---ee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC--ceEEEeCCCe---eEEEecCCCeEE
Q psy12911        104 DLASNQS---MQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ--PIMTINLPER---CYCADVDYPLAV  174 (356)
Q Consensus       104 d~~~~~~---~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~---~~~~~~~~~~~~  174 (356)
                      |+.++..   +. +..|...|.+++|+  |++++|++++.|+.|++||+++++  +...+..+..   .+++++++.+++
T Consensus       133 d~~~~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~  210 (345)
T 3fm0_A          133 EVDEEDEYECVSVLNSHTQDVKHVVWH--PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA  210 (345)
T ss_dssp             EECTTSCEEEEEEECCCCSCEEEEEEC--SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ECCCCCCeEEEEEecCcCCCeEEEEEC--CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE
Confidence            9987643   22 66899999999999  999999999999999999998875  3456666542   455666778999


Q ss_pred             EEecCCeEEEEeCCCCcccc--------------ccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC
Q psy12911        175 VGTAGRGIVLYQLEGKPQEF--------------KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP  240 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~--------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~  240 (356)
                      +++.|++|++||........              ......+...+.+++|+|+    +..+++++.|+.|++|+.+....
T Consensus       211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~----~~~l~s~~~d~~i~vw~~~~~~~  286 (345)
T 3fm0_A          211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL----TGALATACGDDAIRVFQEDPNSD  286 (345)
T ss_dssp             EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT----TCCEEEEETTSCEEEEEECTTSC
T ss_pred             EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC----CCEEEEEeCCCeEEEEEeCCCCC
Confidence            99999999999974332111              1112236678999999999    78999999999999999975432


Q ss_pred             --CCcceee-----eecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911        241 --KDNFTFK-----CHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDARTKLKPS  299 (356)
Q Consensus       241 --~~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~  299 (356)
                        .....+.     +|..           .|++++|+|++ .+||+|+.||+|++|++.+++.+...
T Consensus       287 ~~~~~~~~~~~~~~~h~~-----------~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          287 PQQPTFSLTAHLHQAHSQ-----------DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             TTSCCEEEEEEETTSSSS-----------CEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             cceeeEEEEeeecccccC-----------cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence              1222222     3444           89999999998 59999999999999999988766544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6.9e-39  Score=277.15  Aligned_cols=289  Identities=16%  Similarity=0.205  Sum_probs=231.3

Q ss_pred             CCceEEeCCCC----CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE
Q psy12911         19 NKDFEVVSPPE----DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA   94 (356)
Q Consensus        19 ~~~~~~~~~h~----~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~   94 (356)
                      ..+.+++.+..    -.++.|+|+++    ++||+|. |++|+|||..++.......+.+|...|++|+|+|+|++|++|
T Consensus        91 ~~p~~~l~ap~~~~d~y~~~l~wS~~----n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasg  165 (420)
T 4gga_A           91 SLPDRILDAPEIRNDYYLNLVDWSSG----NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG  165 (420)
T ss_dssp             SSCSEEEECTTCCCCTTCBCEEECTT----SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCceEEECCCCcccccceeEEECCC----CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEE
Confidence            33455555432    24788999986    5788776 899999999985444444566788999999999999999999


Q ss_pred             cCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeCCCe---eEEEecC
Q psy12911         95 GCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINLPER---CYCADVD  169 (356)
Q Consensus        95 ~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~---~~~~~~~  169 (356)
                      +.||.|++||+.+++.+. +.+|...+.++.++    +.+|++|+.|+.+++||.... ..+..+..+..   ...+.+.
T Consensus       166 s~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~  241 (420)
T 4gga_A          166 TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD  241 (420)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred             ECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCC
Confidence            999999999999998877 78899999998875    578999999999999999875 45566666553   4456667


Q ss_pred             CCeEEEEecCCeEEEEeCCCCcccc--ccccCcccccceEEEeecCCCCCCCeEEE--eecCCeEEEEEeCCCCCCCcce
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEF--KKTESPLKYQNRCIAIFRDKKKQPAGYGL--GSVEGRVAIQYVNPANPKDNFT  245 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~dg~i~i~~~~~~~~~~~~~  245 (356)
                      +..+++++.|+.+++|+...+....  ......+...|.+++|+|..   ...+++  |+.|+.|++||+...  .....
T Consensus       242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~---~~~la~~~gs~D~~I~iwd~~t~--~~~~~  316 (420)
T 4gga_A          242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ---SNVLATGGGTSDRHIRIWNVCSG--ACLSA  316 (420)
T ss_dssp             SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTC---TTEEEEEECTTTCEEEEEETTTT--EEEEE
T ss_pred             CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCc---ccEEEEEeecCCCEEEEEeCCcc--cccee
Confidence            7899999999999999998765322  22234567889999999984   455555  457999999999766  55566


Q ss_pred             eeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc--CCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        246 FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG--SEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      +..+.            .+.++.|+|+++.+++++  .|+.|+|||+.+++++..+.+|.+.|++++|+|||++|++|+.
T Consensus       317 ~~~~~------------~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~  384 (420)
T 4gga_A          317 VDAHS------------QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA  384 (420)
T ss_dssp             EECSS------------CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             ecccc------------ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence            65554            699999999998888764  7999999999999999999999999999999999999999997


Q ss_pred             cCCcCCCccC
Q psy12911        324 YDWSKGHEHN  333 (356)
Q Consensus       324 ~d~~~~~~~~  333 (356)
                      |...+.+.++
T Consensus       385 D~tvriWdv~  394 (420)
T 4gga_A          385 DETLRLWRCF  394 (420)
T ss_dssp             TTEEEEECCS
T ss_pred             CCeEEEEECC
Confidence            7644333333

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9.4e-40  Score=305.55  Aligned_cols=280  Identities=17%  Similarity=0.220  Sum_probs=242.2

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      ....+.+.+|.+.|++++|+|++   .+||+|+.||.|+|||+.+  ......+.+|..+|.+++|+|++++|++++.||
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~---~~la~~~~~g~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   77 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTE---PWVLTTLYSGRVEIWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF   77 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSS---SEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred             cccceeeecCCCceEEEEECCCC---CEEEEEeCCCEEEEEECCC--CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCC
Confidence            34567789999999999999999   9999999999999999987  345578889999999999999999999999999


Q ss_pred             eEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeCCC-eeEE--Eec-CCCe
Q psy12911         99 TVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINLPE-RCYC--ADV-DYPL  172 (356)
Q Consensus        99 ~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~-~~~~--~~~-~~~~  172 (356)
                      .|++||+.+++.+. +.+|...|.+++|+  |++++|++++.||.|++||+.++ .....+..+. .+.+  +++ ++..
T Consensus        78 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  155 (814)
T 3mkq_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST  155 (814)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred             eEEEEECCCCcEEEEEecCCCCEEEEEEe--CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCE
Confidence            99999999998876 77799999999999  99999999999999999999987 5566666554 3444  444 4568


Q ss_pred             EEEEecCCeEEEEeCCCCccccccccCcccccceEEEeec--CCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeec
Q psy12911        173 AVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFR--DKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHR  250 (356)
Q Consensus       173 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  250 (356)
                      +++++.|+.|++||+++....... ...+...+.+++|+|  +    +..+++++.||.|++||+...  ..+..+.+|.
T Consensus       156 l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~----~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~  228 (814)
T 3mkq_A          156 FASGCLDRTVKVWSLGQSTPNFTL-TTGQERGVNYVDYYPLPD----KPYMITASDDLTIKIWDYQTK--SCVATLEGHM  228 (814)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEE-ECCCTTCCCEEEECCSTT----CCEEEEECTTSEEEEEETTTT--EEEEEEECCS
T ss_pred             EEEEeCCCeEEEEECCCCcceeEE-ecCCCCCEEEEEEEECCC----CCEEEEEeCCCEEEEEECCCC--cEEEEEcCCC
Confidence            999999999999999876543322 224457899999999  6    789999999999999999765  5677777777


Q ss_pred             CCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCC--EEEEEec
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQ--IFAYAVS  323 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~s~  323 (356)
                      .           .|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.+++|+|+++  ++++++.
T Consensus       229 ~-----------~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  292 (814)
T 3mkq_A          229 S-----------NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD  292 (814)
T ss_dssp             S-----------CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEET
T ss_pred             C-----------CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeC
Confidence            6           899999999999999999999999999999999999999999999999999998  4665553

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.7e-40  Score=280.11  Aligned_cols=278  Identities=10%  Similarity=0.040  Sum_probs=214.0

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCC-------eEEEEeccCCCcee--------eeeeccCCcceeEEEEccCCCeEEE
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDN-------NVRCWEVEPNGKTI--------PKSMQGMSEPVLDVAWIDDGTKVFM   93 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg-------~i~vw~~~~~~~~~--------~~~~~~~~~~v~~~~~s~~~~~l~~   93 (356)
                      .-+|+|++|+|++   ++|++|+.+.       .|++|++.......        ...+.+|...|.+++++  ++.+++
T Consensus        14 g~PV~sv~fs~dg---~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~   88 (365)
T 4h5i_A           14 GYPAYGAKFLNND---TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILV   88 (365)
T ss_dssp             SSCEEEEEEEETT---EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEE
T ss_pred             CCCEEEEEEeCCC---cEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEE
Confidence            3589999999999   9999997543       59999997643211        12466788889888775  456666


Q ss_pred             E-----------cCCCeEEEEEcCCCcee-e---------ecccCCCeeEEEEEeCCCCCeEEEEE--CCCeEEEEeCCC
Q psy12911         94 A-----------GCDKTVKCWDLASNQSM-Q---------VAQHDAPVKTCHWIKAPNYTCLMTGS--WDKTLKFWDLRT  150 (356)
Q Consensus        94 ~-----------~~dg~i~vwd~~~~~~~-~---------~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~  150 (356)
                      |           +.|+.+++|++...... .         ...+...+.+++|+  |||+++++++  .|++|+|||+++
T Consensus        89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS--pDg~~la~as~~~d~~i~iwd~~~  166 (365)
T 4h5i_A           89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS--REGTVAAIASSKVPAIMRIIDPSD  166 (365)
T ss_dssp             ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC--TTSSCEEEEESCSSCEEEEEETTT
T ss_pred             EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc--CCCCEEEEEECCCCCEEEEeECCC
Confidence            5           45788999998765321 1         22345668999999  9999987544  789999999999


Q ss_pred             CCceEEEeCCCeeE--EEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC
Q psy12911        151 PQPIMTINLPERCY--CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG  228 (356)
Q Consensus       151 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg  228 (356)
                      ++.+..+..+..+.  ++++++.++++++ ++.+.+|+..++..........+...+.+++|+|+    +..+++++.++
T Consensus       167 ~~~~~~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd----g~~l~~~s~d~  241 (365)
T 4h5i_A          167 LTEKFEIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIAD----DTVLIAASLKK  241 (365)
T ss_dssp             TEEEEEEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEET----TEEEEEEEESS
T ss_pred             CcEEEEeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCC----CCEEEEEecCC
Confidence            99999988766554  4556667887777 45566777766655555555567788999999999    88999999887


Q ss_pred             ----eEEEEEeCCCCCC--CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC-CCC
Q psy12911        229 ----RVAIQYVNPANPK--DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP-SEA  301 (356)
Q Consensus       229 ----~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~  301 (356)
                          .+++|+.......  ....+.+|..           .|++++|+|+|++||+|+.|++|+|||+.+++++.. +++
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----------~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g  310 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQVTNRFK-----------GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA  310 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEEEESSCS-----------CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS
T ss_pred             cceeEEeecccccceecceeeeeecCCCC-----------CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc
Confidence                5777777554222  1234555655           899999999999999999999999999999999887 579


Q ss_pred             CccceEEEEECCCCCEEEEEeccCCcCC
Q psy12911        302 MDMSISTCALNHNGQIFAYAVSYDWSKG  329 (356)
Q Consensus       302 ~~~~v~~~~~s~~~~~l~~~s~~d~~~~  329 (356)
                      |...|++|+|||||++||+||.|...+.
T Consensus       311 H~~~V~~v~fSpdg~~laS~S~D~tvrv  338 (365)
T 4h5i_A          311 HSFAITEVTISPDSTYVASVSAANTIHI  338 (365)
T ss_dssp             SSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            9999999999999999999997664333

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.2e-39  Score=268.80  Aligned_cols=255  Identities=13%  Similarity=0.174  Sum_probs=205.4

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      .+..+.+|...|.+++|+|++   ++|++|+.|++|+|||+.+  ......+.+|...|.+++|+|++++|++++.|++|
T Consensus        57 ~~~~~~~h~~~v~~~~~s~dg---~~l~s~s~D~~v~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i  131 (319)
T 3frx_A           57 PVRSFKGHSHIVQDCTLTADG---AYALSASWDKTLRLWDVAT--GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI  131 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             cceEEeCCcccEEEEEECCCC---CEEEEEeCCCEEEEEECCC--CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            356788999999999999999   9999999999999999988  34557888999999999999999999999999999


Q ss_pred             EEEEcCCCceeeecccCCCeeEEEEEeCC----CCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEecCCCeE
Q psy12911        101 KCWDLASNQSMQVAQHDAPVKTCHWIKAP----NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCADVDYPLA  173 (356)
Q Consensus       101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~  173 (356)
                      ++||++......+.+|...|.++.|+|..    ++..+++++.|+.|++||+++.+....+..+.   ..+++++++.++
T Consensus       132 ~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l  211 (319)
T 3frx_A          132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI  211 (319)
T ss_dssp             EEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEE
T ss_pred             EEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEE
Confidence            99999876666688999999999998311    45589999999999999999998888887665   345666778899


Q ss_pred             EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911        174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG  253 (356)
Q Consensus       174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  253 (356)
                      ++++.|+.|++||+++.......   .....+.+++|+|+    +..+++++. +.+++|+++..  .....+..+..  
T Consensus       212 ~s~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~----~~~la~~~~-~~i~v~~~~~~--~~~~~~~~~~~--  279 (319)
T 3frx_A          212 ASAGKDGEIMLWNLAAKKAMYTL---SAQDEVFSLAFSPN----RYWLAAATA-TGIKVFSLDPQ--YLVDDLRPEFA--  279 (319)
T ss_dssp             EEEETTCEEEEEETTTTEEEEEE---ECCSCEEEEEECSS----SSEEEEEET-TEEEEEEETTE--EEEEEECCCCT--
T ss_pred             EEEeCCCeEEEEECCCCcEEEEe---cCCCcEEEEEEcCC----CCEEEEEcC-CCcEEEEeCcC--eeeeccCcccc--
Confidence            99999999999999987543322   23467999999999    677776664 56999999754  22222221110  


Q ss_pred             CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc
Q psy12911        254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~  293 (356)
                       .....+...+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus       280 -~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          280 -GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             -TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             -ccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence             000011126899999999999999999999999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-39  Score=280.70  Aligned_cols=270  Identities=11%  Similarity=0.133  Sum_probs=230.9

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  106 (356)
                      +|.+.|++++|+|++   ++|++|+.||.|++||..   ......+..|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       106 ~~~~~v~~~~~s~~~---~~l~~~~~dg~i~i~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDG---NSIVTGVENGELRLWNKT---GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             --CBCEEEEEECTTS---SEEEEEETTSCEEEEETT---SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             CCCCceEEEEEcCCC---CEEEEEeCCCeEEEEeCC---CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence            478899999999999   999999999999999933   24457788899999999999999999999999999999999


Q ss_pred             CCceee-ecccCCC---------------eeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEe
Q psy12911        107 SNQSMQ-VAQHDAP---------------VKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCAD  167 (356)
Q Consensus       107 ~~~~~~-~~~~~~~---------------v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~  167 (356)
                      +++.+. +..+...               +.++.|+  +++ .+++++.||.|++||+++++.+..+..+.   ..+.++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  256 (425)
T 1r5m_A          180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV--DDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN  256 (425)
T ss_dssp             TTEEEEEECCC---------------CCCBSCCEEE--ETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE
T ss_pred             CCcEEEEeeccccCccceeeccccCCcceeeEEEEc--CCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC
Confidence            988776 4445555               9999998  664 68899999999999999999888887655   345666


Q ss_pred             cCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911        168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK  247 (356)
Q Consensus       168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  247 (356)
                      +++..+++++.|+.|++||++........  ..+...+.+++|+|+    + .+++++.|+.|++||++..  +.+..+.
T Consensus       257 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~----~-~l~~~~~d~~i~i~d~~~~--~~~~~~~  327 (425)
T 1r5m_A          257 DTNKLLLSASDDGTLRIWHGGNGNSQNCF--YGHSQSIVSASWVGD----D-KVISCSMDGSVRLWSLKQN--TLLALSI  327 (425)
T ss_dssp             TTTTEEEEEETTSCEEEECSSSBSCSEEE--CCCSSCEEEEEEETT----T-EEEEEETTSEEEEEETTTT--EEEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCccceEe--cCCCccEEEEEECCC----C-EEEEEeCCCcEEEEECCCC--cEeEecc
Confidence            77889999999999999999886543322  346788999999998    6 9999999999999999765  5667777


Q ss_pred             eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce--------------------ecCCCCCCcc--c
Q psy12911        248 CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART--------------------KLKPSEAMDM--S  305 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~--~  305 (356)
                      .|..           .|.+++|+|++++|++++.||.|++||+.+++                    .+..+..|..  .
T Consensus       328 ~~~~-----------~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (425)
T 1r5m_A          328 VDGV-----------PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDY  396 (425)
T ss_dssp             CTTC-----------CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCC
T ss_pred             cCCc-----------cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCc
Confidence            7766           89999999999999999999999999999888                    8888898876  9


Q ss_pred             eEEEEECCCCCEEEEEeccC
Q psy12911        306 ISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       306 v~~~~~s~~~~~l~~~s~~d  325 (356)
                      |++++|+|++++|++++.|+
T Consensus       397 v~~~~~s~~~~~l~~~~~dg  416 (425)
T 1r5m_A          397 IFDLSWNCAGNKISVAYSLQ  416 (425)
T ss_dssp             EEEEEECTTSSEEEEEESSS
T ss_pred             eEEEEccCCCceEEEEecCc
Confidence            99999999999999998664

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-40  Score=282.69  Aligned_cols=247  Identities=11%  Similarity=0.136  Sum_probs=196.1

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      ...+.|.++|++++|+|++   ++|++|+.|+.|+|||+.++.......+.+|...|.+++|+|++++|++++.|+.|++
T Consensus         5 ~~~~~~~~~v~~~~~s~~g---~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v   81 (377)
T 3dwl_C            5 QVLHILPKPSYEHAFNSQR---TEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV   81 (377)
T ss_dssp             EEEEECSSCCSCCEECSSS---SEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred             eeEecCCCcEEEEEECCCC---CEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            3455578899999999999   9999999999999999987432566788899999999999999999999999999999


Q ss_pred             EEcCCCc----eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC---ceEEEeC-CC-e--eEEEecCCC
Q psy12911        103 WDLASNQ----SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ---PIMTINL-PE-R--CYCADVDYP  171 (356)
Q Consensus       103 wd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~-~--~~~~~~~~~  171 (356)
                      ||+.+++    ...+..|...|.+++|+  |++++|++++.|+.|++||+++++   ....+.. +. .  .+++++++.
T Consensus        82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  159 (377)
T 3dwl_C           82 YEKRPDGTWKQTLVLLRLNRAATFVRWS--PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV  159 (377)
T ss_dssp             C------CCCCEEECCCCSSCEEEEECC--TTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred             EEcCCCCceeeeeEecccCCceEEEEEC--CCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence            9999887    33477899999999999  999999999999999999999887   4677765 33 3  444556677


Q ss_pred             eEEEEecCCeEEEEeCCCCcc----------------ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQ----------------EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV  235 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~----------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  235 (356)
                      .+++++.|+.|++||++....                ...... .+...+.+++|+|+    +.++++++.|+.|++||+
T Consensus       160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~----~~~l~~~~~d~~i~iwd~  234 (377)
T 3dwl_C          160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS----GNALAYAGHDSSVTIAYP  234 (377)
T ss_dssp             EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT----SSCEEEEETTTEEC-CEE
T ss_pred             EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC----CCEEEEEeCCCcEEEEEC
Confidence            999999999999999964321                111111 67788999999999    789999999999999999


Q ss_pred             CCCCCC--CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        236 NPANPK--DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       236 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      ......  .+..+..|..           .|.+++|+|++++|++++.|+.+ +|+..
T Consensus       235 ~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          235 SAPEQPPRALITVKLSQL-----------PLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CSTTSCEEECCCEECSSS-----------CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CCCCCcceeeEeecCCCC-----------ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            876321  1677888877           89999999999999999877766 66554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.4e-39  Score=274.93  Aligned_cols=246  Identities=17%  Similarity=0.218  Sum_probs=193.9

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceee--eeeccCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIP--KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK  101 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  101 (356)
                      ...+|...|++++|+|++   . +++++.||+|+|||+.++.....  ....+|...|++++|+|++++|++++.|+.|+
T Consensus        89 ~~~~~~~~V~~~~~s~d~---~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~  164 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEK---G-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK  164 (357)
T ss_dssp             EEEECSSCEEEEEEETTT---E-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             ccCCCCCCEEEEEEcCCC---C-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence            345688999999999997   5 55678899999999987443222  23457999999999999999999999999999


Q ss_pred             EEEcCCCceee-ecccCCCeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEEeCC---CeeEEE--ecCC-CeE
Q psy12911        102 CWDLASNQSMQ-VAQHDAPVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTINLP---ERCYCA--DVDY-PLA  173 (356)
Q Consensus       102 vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~--~~~~-~~~  173 (356)
                      +||+++++.+. +..|...|++++|+  +++ .++++++.||.|++||+++++.+..+...   ..+.++  ++.+ .++
T Consensus       165 iwd~~~~~~~~~~~~h~~~v~~v~~s--~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l  242 (357)
T 4g56_B          165 VWDLSQKAVLKSYNAHSSEVNCVAAC--PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTF  242 (357)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEC--TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEc--cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceE
Confidence            99999998876 77899999999999  766 47899999999999999999877766532   234444  4443 478


Q ss_pred             EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911        174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG  253 (356)
Q Consensus       174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  253 (356)
                      ++++.|+.|++||++++.....  ...+...|.+++|+|++   ..+|++++.|+.|+|||++..  +.+ ...+|..  
T Consensus       243 a~g~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~l~~sp~~---~~~lasgs~D~~i~iwd~~~~--~~~-~~~~H~~--  312 (357)
T 4g56_B          243 ACGDETGNVSLVNIKNPDSAQT--SAVHSQNITGLAYSYHS---SPFLASISEDCTVAVLDADFS--EVF-RDLSHRD--  312 (357)
T ss_dssp             EEEESSSCEEEEESSCGGGCEE--ECCCSSCEEEEEECSSS---SCCEEEEETTSCEEEECTTSC--EEE-EECCCSS--
T ss_pred             EEeecccceeEEECCCCcEeEE--EeccceeEEEEEEcCCC---CCEEEEEeCCCEEEEEECCCC--cEe-EECCCCC--
Confidence            8899999999999998754322  23567889999999983   357899999999999998765  333 3446776  


Q ss_pred             CCCCcccccceEEEEEeC-CCCEEEEEcCCCeEEEEEcCcce
Q psy12911        254 GAGGVQDIYAVNGIVFHP-VHGTLATVGSEGTFSFWDKDART  294 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp-~~~~l~s~~~dg~i~iwd~~~~~  294 (356)
                               .|++++|+| ++.+|++++.||+|++|++.+..
T Consensus       313 ---------~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          313 ---------FVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             ---------CEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             ---------CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence                     899999999 78999999999999999997643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.4e-38  Score=261.09  Aligned_cols=289  Identities=16%  Similarity=0.206  Sum_probs=223.9

Q ss_pred             CCCCceEEeCCC--CC--CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEE
Q psy12911         17 NPNKDFEVVSPP--ED--SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVF   92 (356)
Q Consensus        17 ~~~~~~~~~~~h--~~--~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~   92 (356)
                      .|..+.+++.+.  .+  ..++|+||+++    +||+|. |++|+|||++++.......+.+|...|++++|+|++++|+
T Consensus         9 ~p~~p~rvldap~~~~d~y~~~l~WS~~~----~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~   83 (318)
T 4ggc_A            9 IPSLPDRILDAPEIRNDYYLNLVDWSSGN----VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA   83 (318)
T ss_dssp             CCSSCSEEEECTTCCCCTTCBCEEECTTS----EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred             cCCCCCEEeeCCCCcccccceEEEECCCC----EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEE
Confidence            345555666543  22  36889999885    777765 9999999999854333345567889999999999999999


Q ss_pred             EEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC-ceEEEeCCC---eeEEEe
Q psy12911         93 MAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ-PIMTINLPE---RCYCAD  167 (356)
Q Consensus        93 ~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~---~~~~~~  167 (356)
                      +|+.||+|++||+++++.+. +.+|...+.++.+.    +..+++++.++.+++|+..... .+..+..+.   ....+.
T Consensus        84 sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~----~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (318)
T 4ggc_A           84 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA  159 (318)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             EEECCCcEEEeecCCceeEEEecCccceEEEeecC----CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence            99999999999999999877 77888888876654    6789999999999999988764 455565554   344556


Q ss_pred             cCCCeEEEEecCCeEEEEeCCCCccccc--cccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911        168 VDYPLAVVGTAGRGIVLYQLEGKPQEFK--KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT  245 (356)
Q Consensus       168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  245 (356)
                      ..+..+++++.|+.|++||++++.....  .....+...+.++.++|.... ...+++++.++.|++|+....  ... .
T Consensus       160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~i~lwd~~~~--~~~-~  235 (318)
T 4ggc_A          160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN-VLATGGGTSDRHIRIWNVCSG--ACL-S  235 (318)
T ss_dssp             TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT-EEEEEECTTTCEEEEEETTTC--CEE-E
T ss_pred             CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCc-EEEEEecCCCCEEEEEecccc--ccc-c
Confidence            6778999999999999999987653222  223345678899999988421 112346678899999998765  222 2


Q ss_pred             eeeecCCCCCCCcccccceEEEEEeCCCCEEEEE--cCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        246 FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV--GSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      ...+..           .+..+.|+|++..++++  +.|+.|++||+.+++++.++.+|.+.|++++|+|||++||+|+.
T Consensus       236 ~~~~~~-----------~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~  304 (318)
T 4ggc_A          236 AVDAHS-----------QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA  304 (318)
T ss_dssp             EEECSS-----------CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             ccccee-----------eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence            233333           79999999999887765  47999999999999999999999999999999999999999997


Q ss_pred             cCCcCC
Q psy12911        324 YDWSKG  329 (356)
Q Consensus       324 ~d~~~~  329 (356)
                      |...+.
T Consensus       305 D~~v~i  310 (318)
T 4ggc_A          305 DETLRL  310 (318)
T ss_dssp             TTEEEE
T ss_pred             CCeEEE
Confidence            664333

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-40  Score=285.49  Aligned_cols=279  Identities=14%  Similarity=0.191  Sum_probs=227.1

Q ss_pred             CCCCeeEEEecCCCCCceEEEEE----------eCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAG----------SWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~----------~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      +...|.+++|+|++  ..+|++|          +.|+.|+|||+.+...........|...|.+++|+|++++|++++.|
T Consensus        11 ~~~~v~~~~~sp~g--~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   88 (416)
T 2pm9_A           11 EFSRTATFAWSHDK--IPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN   88 (416)
T ss_dssp             EEEESCBCCBCSSS--SCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESS
T ss_pred             hhhhcceEeeCCCC--CCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccC
Confidence            34578999999998  2399999          88999999999874322122233589999999999999999999999


Q ss_pred             CeEEEEEcCC----Ccee-eecccCCCeeEEEEEeCCC-CCeEEEEECCCeEEEEeCCCCC------ceEEE---eCC-C
Q psy12911         98 KTVKCWDLAS----NQSM-QVAQHDAPVKTCHWIKAPN-YTCLMTGSWDKTLKFWDLRTPQ------PIMTI---NLP-E  161 (356)
Q Consensus        98 g~i~vwd~~~----~~~~-~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~~---~~~-~  161 (356)
                      |.|++||+.+    .+.. .+.+|...|.+++|+  |+ +.+|++++.|+.|++||+++++      ....+   ..+ .
T Consensus        89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  166 (416)
T 2pm9_A           89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFN--AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD  166 (416)
T ss_dssp             SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC--SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred             CeEEEeecccccccccchhhccCCccceEEEEEc--CCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence            9999999987    2233 477899999999999  77 8999999999999999999886      33332   222 2


Q ss_pred             --eeEEEecC-CCeEEEEecCCeEEEEeCCCCccccccccC----cccccceEEEeecCCCCCCCeEEEeecCC---eEE
Q psy12911        162 --RCYCADVD-YPLAVVGTAGRGIVLYQLEGKPQEFKKTES----PLKYQNRCIAIFRDKKKQPAGYGLGSVEG---RVA  231 (356)
Q Consensus       162 --~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~dg---~i~  231 (356)
                        ..+.++++ +..+++++.|+.|++||+++..........    .+...+.+++|+|++   ...+++++.++   .|+
T Consensus       167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~~~~i~  243 (416)
T 2pm9_A          167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN---STRVATATGSDNDPSIL  243 (416)
T ss_dssp             CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC---TTEEEEEECCSSSCCCC
T ss_pred             CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC---CCEEEEEECCCCCceEE
Confidence              34555565 568999999999999999987543332221    126789999999983   36899999998   999


Q ss_pred             EEEeCCCCCCCcceee-eecCCCCCCCcccccceEEEEEeC-CCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEE
Q psy12911        232 IQYVNPANPKDNFTFK-CHRSNGGAGGVQDIYAVNGIVFHP-VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTC  309 (356)
Q Consensus       232 i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  309 (356)
                      +||++... .....+. +|..           .|.+++|+| ++++|++++.||.|++||+.+++++..+..|...|.++
T Consensus       244 ~~d~~~~~-~~~~~~~~~~~~-----------~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~  311 (416)
T 2pm9_A          244 IWDLRNAN-TPLQTLNQGHQK-----------GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKT  311 (416)
T ss_dssp             EEETTSTT-SCSBCCCSCCSS-----------CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCE
T ss_pred             EEeCCCCC-CCcEEeecCccC-----------ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEE
Confidence            99998653 4456666 6776           899999999 89999999999999999999999999999999999999


Q ss_pred             EECCCC-CEEEEEeccC
Q psy12911        310 ALNHNG-QIFAYAVSYD  325 (356)
Q Consensus       310 ~~s~~~-~~l~~~s~~d  325 (356)
                      +|+|++ ++|++++.|.
T Consensus       312 ~~s~~~~~~l~s~~~d~  328 (416)
T 2pm9_A          312 KFAPEAPDLFACASFDN  328 (416)
T ss_dssp             EECTTCTTEEEECCSSS
T ss_pred             EECCCCCCEEEEEecCC
Confidence            999999 8999988765

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-38  Score=267.95  Aligned_cols=259  Identities=16%  Similarity=0.253  Sum_probs=200.4

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      ....+.+|...|.+++|+|++   .+|++|+.|++|++||+.++  .....+.+|...|.+++|+|++++|++++.|++|
T Consensus        68 ~~~~l~~h~~~V~~~~~~~~~---~~l~s~s~D~~v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i  142 (343)
T 2xzm_R           68 PHKALTGHNHFVSDLALSQEN---CFAISSSWDKTLRLWDLRTG--TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREI  142 (343)
T ss_dssp             EEEEECCCSSCEEEEEECSST---TEEEEEETTSEEEEEETTSS--CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCE
T ss_pred             ccchhccCCCceEEEEECCCC---CEEEEEcCCCcEEEEECCCC--cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEE
Confidence            356788999999999999999   99999999999999999873  4457788999999999999999999999999999


Q ss_pred             EEEEcCCCceeee---cccCCCeeEEEEEeCCCC----------CeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeE
Q psy12911        101 KCWDLASNQSMQV---AQHDAPVKTCHWIKAPNY----------TCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCY  164 (356)
Q Consensus       101 ~vwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~  164 (356)
                      ++||+........   ..|...|.+++|+  |++          .+|++++.|+.|++|| ...+....+..+.   ..+
T Consensus       143 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~  219 (343)
T 2xzm_R          143 KLWNILGECKFSSAEKENHSDWVSCVRYS--PIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHL  219 (343)
T ss_dssp             EEEESSSCEEEECCTTTSCSSCEEEEEEC--CCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEE
T ss_pred             EEEeccCCceeeeecccCCCceeeeeeec--cccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEE
Confidence            9999985544333   3788999999999  665          7899999999999999 4556666676655   345


Q ss_pred             EEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911        165 CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF  244 (356)
Q Consensus       165 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  244 (356)
                      ++++++.++++++.|+.|++||+..........  .+...+.+++|+|+    +.+++ ++.|+.+++|++.......+.
T Consensus       220 ~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~----~~~la-~~~d~~v~iw~~~~~~~~~~~  292 (343)
T 2xzm_R          220 SISPNGKYIATGGKDKKLLIWDILNLTYPQREF--DAGSTINQIAFNPK----LQWVA-VGTDQGVKIFNLMTQSKAPVC  292 (343)
T ss_dssp             EECTTSSEEEEEETTCEEEEEESSCCSSCSEEE--ECSSCEEEEEECSS----SCEEE-EEESSCEEEEESSSCCSCSEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcccceee--cCCCcEEEEEECCC----CCEEE-EECCCCEEEEEeCCCCCCceE
Confidence            566777899999999999999996543322222  23456999999999    55554 567888999999765433322


Q ss_pred             eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911        245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART  294 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~  294 (356)
                      .+..+..........+...|.+++|+|+|++|++|+.||.|++|+++++.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          293 TIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             ECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             EeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            33211100000000112279999999999999999999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.5e-38  Score=278.73  Aligned_cols=289  Identities=15%  Similarity=0.229  Sum_probs=240.8

Q ss_pred             CCceEEeCCCCCCe-eEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911         19 NKDFEVVSPPEDSI-SCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        19 ~~~~~~~~~h~~~V-~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      ......+.+|.+.| .++.+  ++   ++|++|+.||.|++||+.+  ......+.+|.+.|.+++|++++ +|++|+.|
T Consensus       111 ~~~~~~l~~h~~~v~~~~~~--~~---~~l~sgs~dg~i~vwd~~~--~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~d  182 (464)
T 3v7d_B          111 VPQRTTLRGHMTSVITCLQF--ED---NYVITGADDKMIRVYDSIN--KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTD  182 (464)
T ss_dssp             CCEEEEEECCSSSCEEEEEE--ET---TEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECSTT-EEEEEETT
T ss_pred             CcceEEEcCCCCCcEEEEEE--CC---CEEEEEcCCCcEEEEECCC--CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCC
Confidence            34566788999885 66666  45   7999999999999999987  35567888999999999999988 99999999


Q ss_pred             CeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce----------------------
Q psy12911         98 KTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI----------------------  154 (356)
Q Consensus        98 g~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------------------  154 (356)
                      |+|++||+++++.+. +.+|...|.+++|++.+++.++++++.||.|++||+++++..                      
T Consensus       183 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (464)
T 3v7d_B          183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  262 (464)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred             CCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence            999999999998776 677999999999997778899999999999999999887643                      


Q ss_pred             -EEEeCCC-eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911        155 -MTINLPE-RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI  232 (356)
Q Consensus       155 -~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i  232 (356)
                       ..+..+. .+.++.+++..+++++.|+.|++||+++.......  ..+...+.+++++|+    +..+++++.||.|++
T Consensus       263 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~l~sg~~dg~i~v  336 (464)
T 3v7d_B          263 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL--SGHTDRIYSTIYDHE----RKRCISASMDTTIRI  336 (464)
T ss_dssp             EEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEEETT----TTEEEEEETTSCEEE
T ss_pred             EEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCCCEEEEEEcCC----CCEEEEEeCCCcEEE
Confidence             3333333 46677888899999999999999999886543322  357788999999999    789999999999999


Q ss_pred             EEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEEC
Q psy12911        233 QYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALN  312 (356)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  312 (356)
                      ||++..  +.+..+.+|..           .|.+++|+  +.+|++++.||.|++||+.+++...... +...+..++|+
T Consensus       337 wd~~~~--~~~~~~~~h~~-----------~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~  400 (464)
T 3v7d_B          337 WDLENG--ELMYTLQGHTA-----------LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFY  400 (464)
T ss_dssp             EETTTT--EEEEEECCCSS-----------CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEE
T ss_pred             EECCCC--cEEEEEeCCCC-----------cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEE
Confidence            999776  66778888887           89999997  5899999999999999999877655543 56678889999


Q ss_pred             CCCCEEEEEeccCCcCCCccCCCCCCcee
Q psy12911        313 HNGQIFAYAVSYDWSKGHEHNNPNKGNAI  341 (356)
Q Consensus       313 ~~~~~l~~~s~~d~~~~~~~~~~~~~~~~  341 (356)
                      +++++|++++ ++   ...+|+...+..+
T Consensus       401 ~~~~~l~~~~-dg---~i~iwd~~~g~~~  425 (464)
T 3v7d_B          401 VSDNILVSGS-EN---QFNIYNLRSGKLV  425 (464)
T ss_dssp             ECSSEEEEEE-TT---EEEEEETTTCCEE
T ss_pred             eCCCEEEEec-CC---eEEEEECCCCcEE
Confidence            9999999987 33   4566666655544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.4e-38  Score=271.11  Aligned_cols=292  Identities=13%  Similarity=0.140  Sum_probs=231.1

Q ss_pred             CCceEEeCCCCCCeeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCceeeeee-----------ccCCcceeEEEEcc
Q psy12911         19 NKDFEVVSPPEDSISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM-----------QGMSEPVLDVAWID   86 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-----------~~~~~~v~~~~~s~   86 (356)
                      .+....+.+|.+.|++++|+| ++   ++|++|+.||.|++||+.+.........           .+|...|.+++|+|
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  109 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEG---RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP  109 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTC---CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred             CcceeeeeccCCcEEEEEEecCCC---CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence            456678889999999999999 88   9999999999999999987433221111           35999999999999


Q ss_pred             -CCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeC-CCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-ee
Q psy12911         87 -DGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKA-PNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RC  163 (356)
Q Consensus        87 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~  163 (356)
                       ++++|++++.||.|++||+.+++......+...+.++.|++. +++.++++++.|+.|++||+++++.+..+..+. .+
T Consensus       110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v  189 (408)
T 4a11_B          110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI  189 (408)
T ss_dssp             TCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE
T ss_pred             CCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE
Confidence             778999999999999999999998887778999999999831 145599999999999999999999999888655 33


Q ss_pred             --EEEecCCC-eEEEEecCCeEEEEeCCCCccccccc--------------cCcccccceEEEeecCCCCCCCeEEEeec
Q psy12911        164 --YCADVDYP-LAVVGTAGRGIVLYQLEGKPQEFKKT--------------ESPLKYQNRCIAIFRDKKKQPAGYGLGSV  226 (356)
Q Consensus       164 --~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~--------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  226 (356)
                        +.+.+.+. .+++++.|+.|++||++.........              ...+...+.+++|+|+    +..+++++.
T Consensus       190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~  265 (408)
T 4a11_B          190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD----GLHLLTVGT  265 (408)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT----SSEEEEEET
T ss_pred             EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC----CCEEEEecC
Confidence              44555566 58899999999999998764322221              1356788999999999    889999999


Q ss_pred             CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccce
Q psy12911        227 EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSI  306 (356)
Q Consensus       227 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  306 (356)
                      ||.+++||+.....  ...+..+.......      .+........+..+++++.|+.|++||+.+++.+..+.+|.+.|
T Consensus       266 dg~i~vwd~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v  337 (408)
T 4a11_B          266 DNRMRLWNSSNGEN--TLVNYGKVCNNSKK------GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV  337 (408)
T ss_dssp             TSCEEEEETTTCCB--CCCCCCCCCCCCSS------CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCE
T ss_pred             CCeEEEEECCCCcc--ceeccccccccccc------cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeE
Confidence            99999999987632  22222221110000      12222223345667777889999999999999999999999999


Q ss_pred             EEEEECCCCCEEEEEeccC
Q psy12911        307 STCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       307 ~~~~~s~~~~~l~~~s~~d  325 (356)
                      ++++|+|++++|++++.|+
T Consensus       338 ~~~~~s~~~~~l~s~~~dg  356 (408)
T 4a11_B          338 DCCVFQSNFQELYSGSRDC  356 (408)
T ss_dssp             EEEEEETTTTEEEEEETTS
T ss_pred             EEEEEcCCCCEEEEECCCC
Confidence            9999999999999998765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.8e-39  Score=281.26  Aligned_cols=286  Identities=15%  Similarity=0.179  Sum_probs=218.1

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc---------eeeeeeccCC------------cceeEEEEc
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK---------TIPKSMQGMS------------EPVLDVAWI   85 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---------~~~~~~~~~~------------~~v~~~~~s   85 (356)
                      .|.+.|++++|+|++   ++||+|+.||.|+||++.+...         .....+.+|.            ..|.+++|+
T Consensus        26 ~~~~~V~~v~~s~~g---~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           26 AEADIISTVEFNHSG---ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             CGGGSEEEEEECSSS---SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             cccCcEEEEEECCCC---CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence            367899999999999   9999999999999999987321         1456788998            889999999


Q ss_pred             cCC--CeEEEEcCCCeEEEEEcCCCcee----------------------------------------e-ecccCCCeeE
Q psy12911         86 DDG--TKVFMAGCDKTVKCWDLASNQSM----------------------------------------Q-VAQHDAPVKT  122 (356)
Q Consensus        86 ~~~--~~l~~~~~dg~i~vwd~~~~~~~----------------------------------------~-~~~~~~~v~~  122 (356)
                      |++  .+|++++.|+.|++||+.+++..                                        . ..+|...|.+
T Consensus       103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence            998  79999999999999999764431                                        1 3579999999


Q ss_pred             EEEEeCCCCCeEEEEECCCeEEEEeCCC-CCceEEE-------eCCC---eeEEEecCC-CeEEEEecCCeEEEEeCCCC
Q psy12911        123 CHWIKAPNYTCLMTGSWDKTLKFWDLRT-PQPIMTI-------NLPE---RCYCADVDY-PLAVVGTAGRGIVLYQLEGK  190 (356)
Q Consensus       123 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-------~~~~---~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~  190 (356)
                      ++|+  |++++|++| .|+.|++||+++ ++.+..+       ..+.   ..+.+++++ ..+++++.|+.|++||++++
T Consensus       183 ~~~~--~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  259 (447)
T 3dw8_B          183 ISIN--SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS  259 (447)
T ss_dssp             EEEC--TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred             EEEc--CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence            9999  999999998 799999999984 4444433       2222   345555666 78999999999999999987


Q ss_pred             ccc---cccccCccc------------ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        191 PQE---FKKTESPLK------------YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       191 ~~~---~~~~~~~~~------------~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      ...   ..... .+.            ..+.+++|+|+    +.++++++. +.|++||++.. .+.+..+.+|......
T Consensus       260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~~-~~v~iwd~~~~-~~~~~~~~~~~~~~~~  332 (447)
T 3dw8_B          260 ALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHS----GRYMMTRDY-LSVKVWDLNME-NRPVETYQVHEYLRSK  332 (447)
T ss_dssp             SSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECTT----SSEEEEEES-SEEEEEETTCC-SSCSCCEESCGGGTTT
T ss_pred             ccccceeeEec-cCCCccccccccccCceEEEEEECCC----CCEEEEeeC-CeEEEEeCCCC-ccccceeecccccccc
Confidence            531   11111 222            38999999999    789999988 99999999762 2567778777531100


Q ss_pred             C----CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC--------------------------------C
Q psy12911        256 G----GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP--------------------------------S  299 (356)
Q Consensus       256 ~----~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~--------------------------------~  299 (356)
                      .    .......+..++|+|++++|++|+.||.|++||+.+++.+..                                .
T Consensus       333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (447)
T 3dw8_B          333 LCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDS  412 (447)
T ss_dssp             HHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGG
T ss_pred             ccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccc
Confidence            0    000001134599999999999999999999999998765420                                0


Q ss_pred             CCCccceEEEEECCCCCEEEEEeccC
Q psy12911        300 EAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       300 ~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ..+...|..++|+|++++||+++.+.
T Consensus       413 ~~~~~~i~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          413 LDFNKKILHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             CCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred             cccCCceeEEEECCCCCEEEEEecce
Confidence            12345789999999999999998643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-37  Score=259.04  Aligned_cols=250  Identities=18%  Similarity=0.248  Sum_probs=209.5

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      ..+....+.+|...|.+++|+|++   ++|++|+.|+.|++||+.+  ......+.+|...|.+++|+|++++|++++.|
T Consensus        54 ~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  128 (312)
T 4ery_A           54 DGKFEKTISGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD  128 (312)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CcccchhhccCCCceEEEEEcCCC---CEEEEECCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            345567788999999999999999   9999999999999999987  34457788999999999999999999999999


Q ss_pred             CeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----eeEEEecCCCe
Q psy12911         98 KTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----RCYCADVDYPL  172 (356)
Q Consensus        98 g~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~  172 (356)
                      +.|++||+++++.+. +..|...|.+++|+  +++++|++++.||.|++||+++++.+..+....    ..+.+++++..
T Consensus       129 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (312)
T 4ery_A          129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFN--RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY  206 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE
T ss_pred             CcEEEEECCCCEEEEEecCCCCcEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE
Confidence            999999999988776 77899999999999  999999999999999999999999888775432    34567778889


Q ss_pred             EEEEecCCeEEEEeCCCCccccccccCcccccceEEEee-cCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911        173 AVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIF-RDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS  251 (356)
Q Consensus       173 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  251 (356)
                      +++++.|+.|++||++++...................++ ++    +.++++|+.||.|++||+...  +.+..+.+|..
T Consensus       207 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~  280 (312)
T 4ery_A          207 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG----GKWIVSGSEDNLVYIWNLQTK--EIVQKLQGHTD  280 (312)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS----SCEEEECCTTSCEEEEETTTC--CEEEEECCCSS
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC----CcEEEEECCCCEEEEEECCCc--hhhhhhhccCC
Confidence            999999999999999987543322221111122223344 34    678999999999999999766  66778888887


Q ss_pred             CCCCCCcccccceEEEEEeCCCCEEEEEc--CCCeEEEEEcC
Q psy12911        252 NGGAGGVQDIYAVNGIVFHPVHGTLATVG--SEGTFSFWDKD  291 (356)
Q Consensus       252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~--~dg~i~iwd~~  291 (356)
                                 .|.+++|+|++++|++++  .|++|++|+.+
T Consensus       281 -----------~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          281 -----------VVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             -----------CEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             -----------cEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence                       899999999999999986  69999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1e-38  Score=269.13  Aligned_cols=270  Identities=14%  Similarity=0.219  Sum_probs=217.8

Q ss_pred             eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc--eeeeeeccCCcceeEEEEcc--CCCeEEEEcCC
Q psy12911         22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK--TIPKSMQGMSEPVLDVAWID--DGTKVFMAGCD   97 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d   97 (356)
                      ...+.+|.+.|++++|+|++   ++|++|+.||.|++||+.....  .....+.+|...|.+++|+|  ++++|++++.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYG---RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSS---SEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cccCcccccceeEEEEcCCC---CEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence            34678999999999999999   9999999999999999986332  45567789999999999999  69999999999


Q ss_pred             CeEEEEEcCCCc---------ee-eecccCCCeeEEEEEeCCC--CCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEE
Q psy12911         98 KTVKCWDLASNQ---------SM-QVAQHDAPVKTCHWIKAPN--YTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYC  165 (356)
Q Consensus        98 g~i~vwd~~~~~---------~~-~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  165 (356)
                      |.|++||+.+++         .. .+..|...|.+++|+  |+  +.+|++++.||.|++||+++++.+..+....... 
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-  157 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA--PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK-  157 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC--CGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE-
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEc--CCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc-
Confidence            999999998863         23 367899999999999  77  9999999999999999999887665443221110 


Q ss_pred             EecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911        166 ADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT  245 (356)
Q Consensus       166 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  245 (356)
                                                 ........+...+.+++|+|+.. .+..+++++.++.+.+|+........+..
T Consensus       158 ---------------------------~~~~~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  209 (351)
T 3f3f_A          158 ---------------------------VLSIPPANHLQSDFCLSWCPSRF-SPEKLAVSALEQAIIYQRGKDGKLHVAAK  209 (351)
T ss_dssp             ---------------------------SCSCCCSSCSCCCEEEEECCCSS-SCCEEEEEETTEEEEEEECTTSCEEEEEE
T ss_pred             ---------------------------ccccccCCcccceeEEEeccCCC-CCcEEEEecCCCcEEEEccCCCceeeeee
Confidence                                       01112224567889999999621 26789999999999777776654444666


Q ss_pred             eeeecCCCCCCCcccccceEEEEEeCCC----CEEEEEcCCCeEEEEEcCcc----------------------------
Q psy12911        246 FKCHRSNGGAGGVQDIYAVNGIVFHPVH----GTLATVGSEGTFSFWDKDAR----------------------------  293 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~----~~l~s~~~dg~i~iwd~~~~----------------------------  293 (356)
                      +.+|..           .|++++|+|++    ++|++++.||.|++||+.++                            
T Consensus       210 ~~~h~~-----------~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (351)
T 3f3f_A          210 LPGHKS-----------LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQG  278 (351)
T ss_dssp             CCCCCS-----------CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------
T ss_pred             cCCCCc-----------ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccc
Confidence            777776           89999999998    89999999999999999875                            


Q ss_pred             ------------------eecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCc
Q psy12911        294 ------------------TKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGN  339 (356)
Q Consensus       294 ------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~  339 (356)
                                        +.+..+.+|...|++++|+|++++|++++.|+   ...+|+...+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~v~iw~~~~~~  339 (351)
T 3f3f_A          279 RSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDG---KVRLWKATYSN  339 (351)
T ss_dssp             ------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTS---CEEEEEECTTS
T ss_pred             ccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCC---cEEEEecCcCc
Confidence                              56677788999999999999999999999655   34455555443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-39  Score=282.24  Aligned_cols=252  Identities=8%  Similarity=0.071  Sum_probs=191.1

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCC------ceEEEE-------------------EeCCCeEEEEeccCCCcee--eee
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLP------QYFLIA-------------------GSWDNNVRCWEVEPNGKTI--PKS   71 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~------~~~l~~-------------------~~~dg~i~vw~~~~~~~~~--~~~   71 (356)
                      .+...++. +.+.|.+|+|+|++..      .++||+                   ++.|++|+||++.++....  ...
T Consensus       124 ~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~  202 (524)
T 2j04_B          124 KRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQT  202 (524)
T ss_dssp             CSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEE
T ss_pred             CcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEE
Confidence            33443444 6789999999998511      146666                   4578899999998743221  234


Q ss_pred             eccCCcceeEEEEccC------CCeEEEEcCCCeEEEEEcCCCcee------------eecccCCCeeEEEEEeCCCCCe
Q psy12911         72 MQGMSEPVLDVAWIDD------GTKVFMAGCDKTVKCWDLASNQSM------------QVAQHDAPVKTCHWIKAPNYTC  133 (356)
Q Consensus        72 ~~~~~~~v~~~~~s~~------~~~l~~~~~dg~i~vwd~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~~  133 (356)
                      +.+|.+.|.+++|+|+      +.+||+++.||+|++||+.+++..            .+.+|...|++++|+  ++ ..
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s--~~-~~  279 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL--SP-TT  279 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES--SS-SE
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec--CC-Ce
Confidence            5678899999999996      579999999999999999876421            356789999999998  65 48


Q ss_pred             EEEEECCCeEEEEeCCCCC-ceEEEeCCC-eeEEE----ecCC-CeEEEEecCCeEEEEeCCCCccccccccCcccccce
Q psy12911        134 LMTGSWDKTLKFWDLRTPQ-PIMTINLPE-RCYCA----DVDY-PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNR  206 (356)
Q Consensus       134 l~~~~~dg~i~iwd~~~~~-~~~~~~~~~-~~~~~----~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~  206 (356)
                      |++|+.||+|++||+++++ +...+..|. .+.++    ..++ .++++++.|++|++||+++...............+.
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence            9999999999999999774 455677665 34444    3344 688999999999999998764322221111113478


Q ss_pred             EEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEE
Q psy12911        207 CIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFS  286 (356)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~  286 (356)
                      +++|+|+    +..+++++.|+.|++||++..  ..+.++.+|..           .|++++|+|+|++|++|+.||+|+
T Consensus       360 ~v~fsp~----~~~l~s~~~d~tv~lwd~~~~--~~~~~l~gH~~-----------~V~sva~Sp~g~~l~Sgs~Dgtv~  422 (524)
T 2j04_B          360 PVVYCPQ----IYSYIYSDGASSLRAVPSRAA--FAVHPLVSRET-----------TITAIGVSRLHPMVLAGSADGSLI  422 (524)
T ss_dssp             CEEEETT----TTEEEEECSSSEEEEEETTCT--TCCEEEEECSS-----------CEEEEECCSSCCBCEEEETTTEEE
T ss_pred             ceEeCCC----cCeEEEeCCCCcEEEEECccc--ccceeeecCCC-----------ceEEEEeCCCCCeEEEEECCCEEE
Confidence            9999998    778999999999999999765  56678888987           899999999999999999999999


Q ss_pred             EEEcC
Q psy12911        287 FWDKD  291 (356)
Q Consensus       287 iwd~~  291 (356)
                      +||+.
T Consensus       423 lwd~~  427 (524)
T 2j04_B          423 ITNAA  427 (524)
T ss_dssp             CCBSC
T ss_pred             EEech
Confidence            99854

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.7e-38  Score=270.06  Aligned_cols=240  Identities=21%  Similarity=0.291  Sum_probs=203.2

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ  109 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  109 (356)
                      ..|++++|+|++   ++|++|+.|+.|+|||+.+  ......+.+|...|.+++|+|++++|++++.|++|++||+++++
T Consensus       124 ~~v~~v~~s~dg---~~l~s~~~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          124 LYIRSVCFSPDG---KFLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             CBEEEEEECTTS---SEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eeEEEEEECCCC---CEEEEEcCCCeEEEEECCC--CcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence            359999999999   9999999999999999987  45557889999999999999999999999999999999999998


Q ss_pred             eeeecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEEe-------CCC-e--eEEEecCCCeEEEEec
Q psy12911        110 SMQVAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTIN-------LPE-R--CYCADVDYPLAVVGTA  178 (356)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~-~--~~~~~~~~~~~~~~~~  178 (356)
                      ......+...+.+++|+  | ++.+|++|+.|+.|++||+++++.+..+.       .+. .  .+.+++++..+++++.
T Consensus       199 ~~~~~~~~~~v~~~~~~--~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~  276 (393)
T 1erj_A          199 CSLTLSIEDGVTTVAVS--PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  276 (393)
T ss_dssp             EEEEEECSSCEEEEEEC--STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eEEEEEcCCCcEEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence            88766788899999999  6 89999999999999999999998887763       222 2  4555667789999999


Q ss_pred             CCeEEEEeCCCCcccc----------ccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee
Q psy12911        179 GRGIVLYQLEGKPQEF----------KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC  248 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~  248 (356)
                      |+.|++||++......          ......|...+.+++++|+    +.++++++.|+.|++||....  +.+..+.+
T Consensus       277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~sgs~D~~v~iwd~~~~--~~~~~l~~  350 (393)
T 1erj_A          277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN----DEYILSGSKDRGVLFWDKKSG--NPLLMLQG  350 (393)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG----GCEEEEEETTSEEEEEETTTC--CEEEEEEC
T ss_pred             CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCC----CCEEEEEeCCCeEEEEECCCC--eEEEEECC
Confidence            9999999998643211          1112346678999999999    789999999999999999766  66788888


Q ss_pred             ecCCCCCCCcccccceEEEEEeC------CCCEEEEEcCCCeEEEEEcCcc
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHP------VHGTLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp------~~~~l~s~~~dg~i~iwd~~~~  293 (356)
                      |..           .|.+++|++      ++++|++|+.||+|++|++...
T Consensus       351 h~~-----------~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          351 HRN-----------SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CSS-----------CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCC-----------CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            987           899999986      6889999999999999998653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.4e-38  Score=260.01  Aligned_cols=245  Identities=15%  Similarity=0.209  Sum_probs=194.5

Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC--cee-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEE
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN--QSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW  146 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw  146 (356)
                      ..+.+|...|++++|+|+|++|++|+.|++|++||+..+  +.+ .+.+|.+.|.+++|++..++++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            457789999999999999999999999999999999753  333 37899999999999832248999999999999999


Q ss_pred             eCCCCC--ceEEEeCCC-eeEE--EecC--CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCC----
Q psy12911        147 DLRTPQ--PIMTINLPE-RCYC--ADVD--YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKK----  215 (356)
Q Consensus       147 d~~~~~--~~~~~~~~~-~~~~--~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----  215 (356)
                      |+++++  .+..+..+. .+.+  +.+.  +..+++++.|+.|++||++............|...+.+++|+|+..    
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            999874  556666544 3444  4444  5689999999999999998764222223345778899999999731    


Q ss_pred             -----CCCCeEEEeecCCeEEEEEeCCCCC--CCcceeeeecCCCCCCCcccccceEEEEEeCCC---CEEEEEcCCCeE
Q psy12911        216 -----KQPAGYGLGSVEGRVAIQYVNPANP--KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH---GTLATVGSEGTF  285 (356)
Q Consensus       216 -----~~~~~~~~~~~dg~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~---~~l~s~~~dg~i  285 (356)
                           ..+..|++|+.|+.|++||++....  .....+.+|..           .|.+++|+|++   .+||+++.|++|
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~-----------~V~~v~~sp~~~~~~~las~s~D~~v  231 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-----------WVRDVAWSPTVLLRSYMASVSQDRTC  231 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-----------CEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC-----------ceEEEEECCCCCCceEEEEEECCCcE
Confidence                 1146899999999999999976531  13456778877           89999999984   899999999999


Q ss_pred             EEEEcCcce-----ecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        286 SFWDKDART-----KLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       286 ~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ++||+.++.     .+.....|...|.+++|+|+|++||+++.|.
T Consensus       232 ~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~  276 (297)
T 2pm7_B          232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  276 (297)
T ss_dssp             EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS
T ss_pred             EEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC
Confidence            999997642     1222356788999999999999999999765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.5e-38  Score=269.08  Aligned_cols=281  Identities=17%  Similarity=0.206  Sum_probs=221.4

Q ss_pred             eCCCCCCee--EEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         25 VSPPEDSIS--CMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        25 ~~~h~~~V~--~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      ..+|...+.  +++|++     ..+++++.|+.|++||+.++. ........|...|.+++|+|++++|++|+.||.|++
T Consensus        87 ~~~~~~~~~~~~~~~s~-----~~l~~~~~d~~v~lw~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  160 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN-----LNVVAVALERNVYVWNADSGS-VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI  160 (401)
T ss_dssp             CTTCCCCTTCBCEEECT-----TSEEEEEETTEEEEEETTTCC-EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCCcCCceEEEEeecC-----CCEEEEECCCeEEEeeCCCCc-EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE
Confidence            346776644  455554     347788899999999998843 322223348999999999999999999999999999


Q ss_pred             EEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-CCceEEEeCCCe---eEEEecCCCeEEEEe
Q psy12911        103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-PQPIMTINLPER---CYCADVDYPLAVVGT  177 (356)
Q Consensus       103 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~  177 (356)
                      ||+.+++.+. +..|...|.+++|+    +++|++++.||.|++||++. ...+..+..+..   .+.+++++..+++++
T Consensus       161 wd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  236 (401)
T 4aez_A          161 YDVESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG  236 (401)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EECcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence            9999988776 67899999999996    46999999999999999994 566777776553   445566778999999


Q ss_pred             cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee--cCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS--VEGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      .|+.|++||+++......  ...+...+.+++|+|++   ...+++++  .|+.|++||+...  +.+..+..+ .    
T Consensus       237 ~d~~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~---~~ll~~~~gs~d~~i~i~d~~~~--~~~~~~~~~-~----  304 (401)
T 4aez_A          237 NDNVVQIWDARSSIPKFT--KTNHNAAVKAVAWCPWQ---SNLLATGGGTMDKQIHFWNAATG--ARVNTVDAG-S----  304 (401)
T ss_dssp             TTSCEEEEETTCSSEEEE--ECCCSSCCCEEEECTTS---TTEEEEECCTTTCEEEEEETTTC--CEEEEEECS-S----
T ss_pred             CCCeEEEccCCCCCccEE--ecCCcceEEEEEECCCC---CCEEEEecCCCCCEEEEEECCCC--CEEEEEeCC-C----
Confidence            999999999998654332  23467889999999973   45666655  7999999999865  455555433 3    


Q ss_pred             CCcccccceEEEEEeCCCCEEEE--EcCCCeEEEEEcCcceecC--CCCCCccceEEEEECCCCCEEEEEeccCCcCCCc
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLAT--VGSEGTFSFWDKDARTKLK--PSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHE  331 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s--~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~  331 (356)
                             .|.+++|+|++++|++  |+.||.|++||+.+++...  .+.+|...|.+++|+|+|++|++++.|+.   ..
T Consensus       305 -------~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~---i~  374 (401)
T 4aez_A          305 -------QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN---LK  374 (401)
T ss_dssp             -------CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE---EE
T ss_pred             -------cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc---EE
Confidence                   7999999999999999  5589999999999865443  46789999999999999999999987653   34


Q ss_pred             cCCCCC
Q psy12911        332 HNNPNK  337 (356)
Q Consensus       332 ~~~~~~  337 (356)
                      +|+...
T Consensus       375 iw~~~~  380 (401)
T 4aez_A          375 FWRVYD  380 (401)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            444443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-38  Score=264.91  Aligned_cols=252  Identities=22%  Similarity=0.342  Sum_probs=189.6

Q ss_pred             ceEEe-CC-CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC-----CceeeeeeccCCcceeEEEEccCCCeEEE
Q psy12911         21 DFEVV-SP-PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN-----GKTIPKSMQGMSEPVLDVAWIDDGTKVFM   93 (356)
Q Consensus        21 ~~~~~-~~-h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~   93 (356)
                      ....+ .+ |.+.|.+++|+|++   ++|++|+.|++|+||++...     .......+.+|...|.+++|+|++++|++
T Consensus        48 ~~~~~~~~~h~~~v~~v~~sp~~---~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las  124 (330)
T 2hes_X           48 LIDVLDETAHKKAIRSVAWRPHT---SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT  124 (330)
T ss_dssp             EEEEECTTCCCSCEEEEEECTTS---SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEE
T ss_pred             EEEEEecCCccCCEEEEEECCCC---CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEE
Confidence            34444 44 99999999999999   99999999999999998542     12345678899999999999999999999


Q ss_pred             EcCCCeEEEEEcCCC----ceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC--CceEEEeCCC-eeEE
Q psy12911         94 AGCDKTVKCWDLASN----QSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP--QPIMTINLPE-RCYC  165 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~----~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~-~~~~  165 (356)
                      |+.|++|++||+...    +.+. +.+|...|.+++|+  |++.+|++++.|++|++||+.++  +++..+..|. .+.+
T Consensus       125 ~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~--p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~  202 (330)
T 2hes_X          125 CSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH--PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS  202 (330)
T ss_dssp             EETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC--SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred             EeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC--CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEE
Confidence            999999999999532    2333 67899999999999  99999999999999999998876  5777787665 3444


Q ss_pred             Eec--C--CCeEEEEecCCeEEEEeCCCCcc-------ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEE
Q psy12911        166 ADV--D--YPLAVVGTAGRGIVLYQLEGKPQ-------EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQY  234 (356)
Q Consensus       166 ~~~--~--~~~~~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  234 (356)
                      +.+  .  +..+++++.|++|++||++....       ........|...|.+++|+++     ..+++++.||.|++|+
T Consensus       203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-----~~l~s~~~dg~v~iw~  277 (330)
T 2hes_X          203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-----GLIASVGADGVLAVYE  277 (330)
T ss_dssp             EEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-----SCEEEEETTSCEEEEE
T ss_pred             EEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-----CEEEEEeCCCEEEEEE
Confidence            444  4  34789999999999999975421       111222237788999999965     4899999999999999


Q ss_pred             eCCCCCCCcce-eeeecCCCCCCCcccccceEEEEEeC--CCCEEEEEcCCCeEEEEEcCc
Q psy12911        235 VNPANPKDNFT-FKCHRSNGGAGGVQDIYAVNGIVFHP--VHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~sp--~~~~l~s~~~dg~i~iwd~~~  292 (356)
                      ......+.... +.+|..          +.|++++|+|  ++++||+|+.||+|++||+++
T Consensus       278 ~~~~~~~~~~~~~~~h~~----------~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          278 EVDGEWKVFAKRALCHGV----------YEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EETTEEEEEEEESCTTTT----------SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cCCCceEEEecccccccc----------ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            86542111111 123321          1699999999  689999999999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=9.3e-39  Score=272.55  Aligned_cols=257  Identities=16%  Similarity=0.185  Sum_probs=211.5

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-----ceeeeeeccCCcceeEEEEccC-CCe
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-----KTIPKSMQGMSEPVLDVAWIDD-GTK   90 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~-~~~   90 (356)
                      ...+....+.+|...|.+++|+|++   ++|++|+.|+.+++|++....     ......+.+|.+.|.++.|+|+ +..
T Consensus        96 ~~~~~~~~~~~h~~~v~~~~~s~~g---~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~  172 (380)
T 3iz6_a           96 LTSQKTHAIKLHCPWVMECAFAPNG---QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR  172 (380)
T ss_dssp             TTTEEEEEEECCCTTCCCCEECTTS---SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSC
T ss_pred             CCCccceEEecCCCCEEEEEECCCC---CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCE
Confidence            3445667788999999999999999   999999999999999987521     2344568899999999999996 457


Q ss_pred             EEEEcCCCeEEEEEcCCCceeee------cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC-CCCceEEEeCCC--
Q psy12911         91 VFMAGCDKTVKCWDLASNQSMQV------AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR-TPQPIMTINLPE--  161 (356)
Q Consensus        91 l~~~~~dg~i~vwd~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~--  161 (356)
                      |++|+.|++|++||+.+++.+..      .+|...|.++.|++ +++.+|++|+.|+.|++||++ ..+.+..+..|.  
T Consensus       173 l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~  251 (380)
T 3iz6_a          173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD  251 (380)
T ss_dssp             EEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC
T ss_pred             EEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC
Confidence            99999999999999999987652      56899999999983 488999999999999999998 457788887665  


Q ss_pred             -eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccC-----cccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911        162 -RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES-----PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV  235 (356)
Q Consensus       162 -~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  235 (356)
                       ..+++++++..+++++.|++|++||++++.........     .....+.+++|+|+    +.++++|+.||.|++||.
T Consensus       252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~g~~dg~i~vwd~  327 (380)
T 3iz6_a          252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS----GRLLFAGYSNGDCYVWDT  327 (380)
T ss_dssp             CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS----SSEEEEECTTSCEEEEET
T ss_pred             eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC----CCEEEEEECCCCEEEEEC
Confidence             35667777889999999999999999987543222111     12234899999999    889999999999999998


Q ss_pred             CCCCCCCccee----eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911        236 NPANPKDNFTF----KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART  294 (356)
Q Consensus       236 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~  294 (356)
                      ...  +....+    .+|..           .|++++|+|+|++|++|+.||+|++|++...+
T Consensus       328 ~~~--~~~~~~~~~~~~h~~-----------~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          328 LLA--EMVLNLGTLQNSHEG-----------RISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             TTC--CEEEEECCSCSSCCC-----------CCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCC--ceEEEEecccCCCCC-----------ceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            755  333333    45555           89999999999999999999999999998654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.2e-38  Score=304.29  Aligned_cols=282  Identities=19%  Similarity=0.237  Sum_probs=241.5

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      ....+.+|.+.|++++|+|++   ++|++|+.||.|++||+.++  .....+.+|...|.+++|+|++++|++++.|+.|
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~d~~i~vw~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v  681 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDG---QRIASCGADKTLQVFKAETG--EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV  681 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ceEEEecccccEEEEEECCCC---CEEEEEeCCCeEEEEECCCC--CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeE
Confidence            345678999999999999999   99999999999999999883  4457788999999999999999999999999999


Q ss_pred             EEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEEE
Q psy12911        101 KCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVVG  176 (356)
Q Consensus       101 ~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  176 (356)
                      ++||+.+++.+. +.+|...|.+++|+|..++.++++++.|+.|++||+++++.+..+..+..   .+++++++..++++
T Consensus       682 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~  761 (1249)
T 3sfz_A          682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASC  761 (1249)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred             EEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEE
Confidence            999999998876 77899999999999433677899999999999999999999998887663   45667778899999


Q ss_pred             ecCCeEEEEeCCCCccccccc-----------cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKT-----------ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT  245 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  245 (356)
                      +.||.|++||++++.......           .......+.+++|+|+    +..+++++ ++.+.+|++...  .....
T Consensus       762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----g~~l~~~~-~~~v~~~d~~~~--~~~~~  834 (1249)
T 3sfz_A          762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD----GDKIIVAA-KNKVLLFDIHTS--GLLAE  834 (1249)
T ss_dssp             ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT----SSEEEEEE-TTEEEEEETTTC--CEEEE
T ss_pred             ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC----CCEEEEEc-CCcEEEEEecCC--CceeE
Confidence            999999999998764322111           1112346889999999    77777776 789999999766  33444


Q ss_pred             ee-eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        246 FK-CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       246 ~~-~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                      +. +|..           .|.+++|+|+++++++++.||.|++||+.+++.+..+.+|.+.|++++|+|+|++|++++.|
T Consensus       835 ~~~~~~~-----------~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d  903 (1249)
T 3sfz_A          835 IHTGHHS-----------TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD  903 (1249)
T ss_dssp             EECSSSS-----------CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EcCCCCC-----------ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC
Confidence            43 4554           89999999999999999999999999999999999999999999999999999999999977


Q ss_pred             C
Q psy12911        325 D  325 (356)
Q Consensus       325 d  325 (356)
                      +
T Consensus       904 g  904 (1249)
T 3sfz_A          904 Q  904 (1249)
T ss_dssp             S
T ss_pred             C
Confidence            6

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.9e-37  Score=281.19  Aligned_cols=280  Identities=16%  Similarity=0.203  Sum_probs=225.6

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCce-EEEEEeCCCeEEEEeccCCCceeeeeeccCCc---ceeEEEEccC-CCeEEE
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQY-FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE---PVLDVAWIDD-GTKVFM   93 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~   93 (356)
                      .+....+.+|...|.+++|+|++   . +|++++.|+.|++||+.+  ......+.+|..   .|.+++|+|+ +++|++
T Consensus       150 ~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  224 (615)
T 1pgu_A          150 GNSLGEVSGHSQRINACHLKQSR---PMRSMTVGDDGSVVFYQGPP--FKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT  224 (615)
T ss_dssp             CCEEEECCSCSSCEEEEEECSSS---SCEEEEEETTTEEEEEETTT--BEEEEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred             CCcceeeecCCccEEEEEECCCC---CcEEEEEeCCCcEEEEeCCC--cceeeeecccCCCCceEEEEEECCCCCCEEEE
Confidence            34567788999999999999998   6 899999999999999987  455678888999   9999999999 999999


Q ss_pred             EcCCCeEEEEEcCCCceeeec-----ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-----ee
Q psy12911         94 AGCDKTVKCWDLASNQSMQVA-----QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-----RC  163 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~  163 (356)
                      ++.|+.|++||+.+++.+...     .|...|.+++|+   ++.+|++++.|+.|++||+++++.+..+..+.     .+
T Consensus       225 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  301 (615)
T 1pgu_A          225 VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL---DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ  301 (615)
T ss_dssp             EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES---SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred             EeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc---CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce
Confidence            999999999999999887744     899999999996   77899999999999999999887776665441     11


Q ss_pred             EEEec-C-------------------------------------------------------------------------
Q psy12911        164 YCADV-D-------------------------------------------------------------------------  169 (356)
Q Consensus       164 ~~~~~-~-------------------------------------------------------------------------  169 (356)
                      ..+.+ .                                                                         
T Consensus       302 ~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~  381 (615)
T 1pgu_A          302 VGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS  381 (615)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC
T ss_pred             eEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC
Confidence            10000 1                                                                         


Q ss_pred             -CCeEEEEec----------------------------------------------------------------------
Q psy12911        170 -YPLAVVGTA----------------------------------------------------------------------  178 (356)
Q Consensus       170 -~~~~~~~~~----------------------------------------------------------------------  178 (356)
                       +..+++++.                                                                      
T Consensus       382 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  461 (615)
T 1pgu_A          382 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV  461 (615)
T ss_dssp             STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred             CCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE
Confidence             123333333                                                                      


Q ss_pred             ----CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee-ecCCC
Q psy12911        179 ----GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC-HRSNG  253 (356)
Q Consensus       179 ----d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~  253 (356)
                          ++.|++||+.++.... .....+...+.+++|+|+    +.++++++.||.|++|++...  +.+..+.+ |..  
T Consensus       462 ~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~----g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~h~~--  532 (615)
T 1pgu_A          462 GLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPS----ETYIAAGDVMGKILLYDLQSR--EVKTSRWAFRTS--  532 (615)
T ss_dssp             EETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTT--EEEECCSCCCSS--
T ss_pred             eecCCCeEEEEECCCccccc-cccCCccCceEEEEECCC----CCEEEEcCCCCeEEEeeCCCC--cceeEeecCCCC--
Confidence                3333333333322111 223346778999999999    889999999999999999766  45556665 666  


Q ss_pred             CCCCcccccceEEEEEeC----------CCCEEEEEcCCCeEEEEEcCcc-eecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911        254 GAGGVQDIYAVNGIVFHP----------VHGTLATVGSEGTFSFWDKDAR-TKLKPSEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp----------~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                               .|++++|+|          ++++|++++.||.|++||+.++ +++..+.+|...|++++|+|+++ |++++
T Consensus       533 ---------~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~  602 (615)
T 1pgu_A          533 ---------KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG  602 (615)
T ss_dssp             ---------CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE
T ss_pred             ---------ceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEec
Confidence                     899999999          9999999999999999999988 78888999999999999999999 99998


Q ss_pred             ccC
Q psy12911        323 SYD  325 (356)
Q Consensus       323 ~~d  325 (356)
                      .|+
T Consensus       603 ~d~  605 (615)
T 1pgu_A          603 ADA  605 (615)
T ss_dssp             TTS
T ss_pred             CCc
Confidence            665

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-38  Score=268.77  Aligned_cols=250  Identities=18%  Similarity=0.264  Sum_probs=205.4

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC--CCeEEEEcCCC
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD--GTKVFMAGCDK   98 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg   98 (356)
                      ...++.+|.+.|++++|+|++   ++||+|+.||.|+||++..........+.+|...|++++|+++  +++|++++.||
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYG---KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSS---SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccEEecCCcccEEEEEEcCCC---CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence            345678999999999999999   9999999999999999985445666788899999999999977  89999999999


Q ss_pred             eEEEEEcCCCc--eee-ecccCCCeeEEEEEeCCC--CCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeE
Q psy12911         99 TVKCWDLASNQ--SMQ-VAQHDAPVKTCHWIKAPN--YTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLA  173 (356)
Q Consensus        99 ~i~vwd~~~~~--~~~-~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (356)
                      .|++||+.+++  ... +..|...|.+++|+  |+  +.+|++++.|+.|++||++++.....+..              
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--------------  143 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWA--PHEYGPLLLVASSDGKVSVVEFKENGTTSPIII--------------  143 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEEC--CGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE--------------
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeC--CCCCCCEEEEecCCCcEEEEecCCCCceeeEEe--------------
Confidence            99999999986  333 67799999999999  77  89999999999999999987643222110              


Q ss_pred             EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCC---------CCCCeEEEeecCCeEEEEEeCCCCC--CC
Q psy12911        174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKK---------KQPAGYGLGSVEGRVAIQYVNPANP--KD  242 (356)
Q Consensus       174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~dg~i~i~~~~~~~~--~~  242 (356)
                                               ..+...+.+++|+|...         .++..+++++.|+.|++||++....  ..
T Consensus       144 -------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  198 (379)
T 3jrp_A          144 -------------------------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  198 (379)
T ss_dssp             -------------------------ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             -------------------------cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence                                     12455677888887200         0178999999999999999976532  13


Q ss_pred             cceeeeecCCCCCCCcccccceEEEEEeCC---CCEEEEEcCCCeEEEEEcCcce-----ecCCCCCCccceEEEEECCC
Q psy12911        243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPV---HGTLATVGSEGTFSFWDKDART-----KLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~---~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~  314 (356)
                      ...+.+|..           .|.+++|+|+   +++|++++.||.|++||+.+++     .+.....|...|++++|+|+
T Consensus       199 ~~~~~~h~~-----------~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  267 (379)
T 3jrp_A          199 ESTLEGHSD-----------WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS  267 (379)
T ss_dssp             EEEECCCSS-----------CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS
T ss_pred             EEEEecccC-----------cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCC
Confidence            345666766           8999999999   8999999999999999998863     44455568899999999999


Q ss_pred             CCEEEEEeccC
Q psy12911        315 GQIFAYAVSYD  325 (356)
Q Consensus       315 ~~~l~~~s~~d  325 (356)
                      |++|++++.|+
T Consensus       268 g~~l~~~~~dg  278 (379)
T 3jrp_A          268 GNVLALSGGDN  278 (379)
T ss_dssp             SCCEEEEESSS
T ss_pred             CCEEEEecCCC
Confidence            99999998765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.5e-38  Score=275.34  Aligned_cols=269  Identities=11%  Similarity=0.062  Sum_probs=216.5

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS  110 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  110 (356)
                      .+++++|+|++   ++|++++.|+.|++||+.+  ......+..| ..+....|++++++|++++.||.|++||+.+++.
T Consensus        58 ~~~~~~~s~~g---~~l~~~~~d~~v~i~d~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  131 (420)
T 3vl1_A           58 AGKGNTFEKVG---SHLYKARLDGHDFLFNTII--RDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ  131 (420)
T ss_dssp             CCTTCEEEEEE---TTEEEEEETTEEEEEECCS--EETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE
T ss_pred             cccceeeeecC---CeEEEEEcCCcEEEEEecc--cceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce
Confidence            45589999999   9999999999999999987  3333455555 4555567899999999999999999999999988


Q ss_pred             eee-cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEEEecCCeEEEEe
Q psy12911        111 MQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVVGTAGRGIVLYQ  186 (356)
Q Consensus       111 ~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~i~d  186 (356)
                      ... ..|...|.+++|+  |++++|++++.|+.|++||+++++.+..+..+..   .+.+++++..+++++.|+.|++||
T Consensus       132 ~~~~~~h~~~v~~~~~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd  209 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFF--PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE  209 (420)
T ss_dssp             EEETTSSSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             eeecccccCccEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence            774 6899999999999  9999999999999999999999999999986653   455666778999999999999999


Q ss_pred             CCCCcccccccc-Ccccc---------------------cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911        187 LEGKPQEFKKTE-SPLKY---------------------QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF  244 (356)
Q Consensus       187 ~~~~~~~~~~~~-~~~~~---------------------~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  244 (356)
                      ++++........ ..+..                     .+.+++|+|+    +..+++++.||.|++||++..  ....
T Consensus       210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~i~d~~~~--~~~~  283 (420)
T 3vl1_A          210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY----GKYVIAGHVSGVITVHNVFSK--EQTI  283 (420)
T ss_dssp             TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT----TEEEEEEETTSCEEEEETTTC--CEEE
T ss_pred             CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC----CCEEEEEcCCCeEEEEECCCC--ceeE
Confidence            998754332221 12233                     3444555666    789999999999999999765  3333


Q ss_pred             eee-eecCCCCCCCcccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcCccee-cCCCCC-CccceEEEEECCCCCEEEE
Q psy12911        245 TFK-CHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKDARTK-LKPSEA-MDMSISTCALNHNGQIFAY  320 (356)
Q Consensus       245 ~~~-~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~  320 (356)
                      .+. .|..           .|.+++|+|+++ +|++|+.||.|++||+.+++. +..+.. |...|.++.| +++++|++
T Consensus       284 ~~~~~~~~-----------~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s  351 (420)
T 3vl1_A          284 QLPSKFTC-----------SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVS  351 (420)
T ss_dssp             EECCTTSS-----------CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEE
T ss_pred             EcccccCC-----------CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEE
Confidence            333 3444           899999999998 999999999999999998754 666666 5667888855 68889999


Q ss_pred             EeccC
Q psy12911        321 AVSYD  325 (356)
Q Consensus       321 ~s~~d  325 (356)
                      ++.|+
T Consensus       352 ~~~d~  356 (420)
T 3vl1_A          352 SGFDT  356 (420)
T ss_dssp             ETTTE
T ss_pred             ecCCc
Confidence            98665

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.7e-37  Score=268.45  Aligned_cols=274  Identities=17%  Similarity=0.251  Sum_probs=232.6

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      ...+....+.+|.+.|.+++|+  +   ++|++|+.||.|++||+.+  ......+.+|...|.+++|+  ++.+++++.
T Consensus       147 ~~~~~~~~~~~h~~~v~~~~~~--~---~~l~s~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~  217 (445)
T 2ovr_B          147 VTGKCLRTLVGHTGGVWSSQMR--D---NIIISGSTDRTLKVWNAET--GECIHTLYGHTSTVRCMHLH--EKRVVSGSR  217 (445)
T ss_dssp             TTCCEEEECCCCSSCEEEEEEE--T---TEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEE--TTEEEEEET
T ss_pred             CCCcEEEEEcCCCCCEEEEEec--C---CEEEEEeCCCeEEEEECCc--CcEEEEECCCCCcEEEEEec--CCEEEEEeC
Confidence            3456677889999999999998  4   6899999999999999987  35557888999999999995  568999999


Q ss_pred             CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCCCeEE
Q psy12911         97 DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYPLAV  174 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~  174 (356)
                      ||.|++||+.+++.+. +.+|...|.++.|    ++.++++++.||.|++||+++++.+..+..+. .+.++.+++..++
T Consensus       218 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~  293 (445)
T 2ovr_B          218 DATLRVWDIETGQCLHVLMGHVAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVV  293 (445)
T ss_dssp             TSEEEEEESSSCCEEEEEECCSSCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEE
T ss_pred             CCEEEEEECCCCcEEEEEcCCcccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEE
Confidence            9999999999988776 7789999999987    46789999999999999999999999988664 5777888889999


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee---ecC
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC---HRS  251 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~---~~~  251 (356)
                      +++.|+.|++||++++......  ..+...+.++.+.      +..+++++.||.|++||++..  +.+..+..   |..
T Consensus       294 ~~~~d~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~------~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~  363 (445)
T 2ovr_B          294 SGSLDTSIRVWDVETGNCIHTL--TGHQSLTSGMELK------DNILVSGNADSTVKIWDIKTG--QCLQTLQGPNKHQS  363 (445)
T ss_dssp             EEETTSCEEEEETTTCCEEEEE--CCCCSCEEEEEEE------TTEEEEEETTSCEEEEETTTC--CEEEEECSTTSCSS
T ss_pred             EEeCCCeEEEEECCCCCEEEEE--cCCcccEEEEEEe------CCEEEEEeCCCeEEEEECCCC--cEEEEEccCCCCCC
Confidence            9999999999999987543222  2455667777664      458999999999999999765  55666665   444


Q ss_pred             CCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC-----CCCccceEEEEECCCCCEEEEEeccCC
Q psy12911        252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS-----EAMDMSISTCALNHNGQIFAYAVSYDW  326 (356)
Q Consensus       252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~s~~d~  326 (356)
                                 .|.+++|+  +++|++|+.||.|++||+.+++.+..+     ..|.+.|++++|+|++.+|++|+.|+.
T Consensus       364 -----------~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          364 -----------AVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             -----------CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             -----------CEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence                       89999995  689999999999999999999888776     467889999999999999999987663

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.8e-37  Score=269.59  Aligned_cols=268  Identities=16%  Similarity=0.250  Sum_probs=227.4

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      ..+....+|...|.|+.|  ++   ++|++|+.||.|++||+.+  ......+.+|...|.+++|  ++++|++|+.||.
T Consensus       124 ~~~~~~~~~~~~v~~~~~--d~---~~l~~g~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~  194 (435)
T 1p22_A          124 QRIHCRSETSKGVYCLQY--DD---QKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVLCLQY--DERVIITGSSDST  194 (435)
T ss_dssp             CCEECCCSSCCCEEEEEC--CS---SEEEEEESSSCEEEEESSS--CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred             eEEecccCCCCcEEEEEE--CC---CEEEEEeCCCeEEEEeCCC--CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCe
Confidence            334455678889999988  66   8999999999999999987  3455778899999999999  7889999999999


Q ss_pred             EEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce---EEEeCCC-eeEEEecCCCeEE
Q psy12911        100 VKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI---MTINLPE-RCYCADVDYPLAV  174 (356)
Q Consensus       100 i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~-~~~~~~~~~~~~~  174 (356)
                      |++||+.+++.+. +..|...|.+++|+  +  ..+++|+.||.|++||+++++..   ..+..+. .+.++.+++..++
T Consensus       195 i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  270 (435)
T 1p22_A          195 VRVWDVNTGEMLNTLIHHCEAVLHLRFN--N--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV  270 (435)
T ss_dssp             EEEEESSSCCEEEEECCCCSCEEEEECC--T--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             EEEEECCCCcEEEEEcCCCCcEEEEEEc--C--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE
Confidence            9999999998876 77899999999986  3  58999999999999999988765   4444443 5677888899999


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                      +++.|+.|++||++++......  ..+...+.++.+.      +..+++|+.||.|++||++..  +.+..+.+|..   
T Consensus       271 s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~------~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~---  337 (435)
T 1p22_A          271 SASGDRTIKVWNTSTCEFVRTL--NGHKRGIACLQYR------DRLVVSGSSDNTIRLWDIECG--ACLRVLEGHEE---  337 (435)
T ss_dssp             EEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEEE------TTEEEEEETTSCEEEEETTTC--CEEEEECCCSS---
T ss_pred             EEeCCCeEEEEECCcCcEEEEE--cCCCCcEEEEEeC------CCEEEEEeCCCeEEEEECCCC--CEEEEEeCCcC---
Confidence            9999999999999987543222  2466788888884      458999999999999999876  66778888877   


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce---------ecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART---------KLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                              .|.+++|  ++.+|++|+.||.|++||+.+++         ++..+.+|.+.|.+++|  ++++|++++.|+
T Consensus       338 --------~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg  405 (435)
T 1p22_A          338 --------LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD  405 (435)
T ss_dssp             --------CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS
T ss_pred             --------cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCC
Confidence                    8999999  78999999999999999998776         67788899999999999  788999998665

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.6e-37  Score=259.40  Aligned_cols=282  Identities=13%  Similarity=0.153  Sum_probs=227.1

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS  107 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  107 (356)
                      |.+.|.+++|+|+|   ++++++..++.+.+|....  ........+|...|.+++|+|++++|++++ ||.|++||+.+
T Consensus         8 ~~~~v~~~~~s~dg---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~   81 (337)
T 1gxr_A            8 GSKPAYSFHVTADG---QMQPVPFPPDALIGPGIPR--HARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISH   81 (337)
T ss_dssp             EEEECCEEEECSSS---CEEECCCCTTSSSSTTCCS--EEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTS
T ss_pred             cCCceeEEEECCCC---CEEEeecCCCcEeccccCC--ccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCC
Confidence            56789999999999   9999988888777776655  222234457999999999999999999999 99999999988


Q ss_pred             Cceee----e--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC--ceEEEeCCC---eeEEEecCCCeEEEE
Q psy12911        108 NQSMQ----V--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ--PIMTINLPE---RCYCADVDYPLAVVG  176 (356)
Q Consensus       108 ~~~~~----~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~  176 (356)
                      ++...    +  ..|...|.+++|+  |++++|++++.|+.|++||+++++  ....+..+.   ..+++.+++..++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  159 (337)
T 1gxr_A           82 PGNKSPVSQLDCLNRDNYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC  159 (337)
T ss_dssp             TTCCSCSEEEECSCTTSBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             CCceeeeecccccCCCCcEEEEEEc--CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEE
Confidence            75432    1  2789999999999  999999999999999999999887  455555544   244556677899999


Q ss_pred             ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG  256 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (356)
                      +.++.|++||++++......  ..+...+.+++|+|+    +..+++++.|+.+++||++..  +.+..+. +..     
T Consensus       160 ~~dg~v~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~~~d~~~~--~~~~~~~-~~~-----  225 (337)
T 1gxr_A          160 CSDGNIAVWDLHNQTLVRQF--QGHTDGASCIDISND----GTKLWTGGLDNTVRSWDLREG--RQLQQHD-FTS-----  225 (337)
T ss_dssp             ETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTT----SSEEEEEETTSEEEEEETTTT--EEEEEEE-CSS-----
T ss_pred             eCCCcEEEEeCCCCceeeee--ecccCceEEEEECCC----CCEEEEEecCCcEEEEECCCC--ceEeeec-CCC-----
Confidence            99999999999987533222  246788999999999    789999999999999999765  3333333 333     


Q ss_pred             CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCC
Q psy12911        257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPN  336 (356)
Q Consensus       257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~  336 (356)
                            .+.+++|+|++++|++++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++.++   ...+|+..
T Consensus       226 ------~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~~~~  295 (337)
T 1gxr_A          226 ------QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTP  295 (337)
T ss_dssp             ------CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEETT
T ss_pred             ------ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCC---cEEEEECC
Confidence                  7999999999999999999999999999987654 5677999999999999999999998654   34445555


Q ss_pred             CCcee
Q psy12911        337 KGNAI  341 (356)
Q Consensus       337 ~~~~~  341 (356)
                      .+..+
T Consensus       296 ~~~~~  300 (337)
T 1gxr_A          296 YGASI  300 (337)
T ss_dssp             TCCEE
T ss_pred             CCeEE
Confidence            44444

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.7e-36  Score=265.78  Aligned_cols=274  Identities=16%  Similarity=0.231  Sum_probs=225.9

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEc--cCCCeEEEE
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWI--DDGTKVFMA   94 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~   94 (356)
                      ...+....+.+|.+.|.+++|+|++    +|++|+.||+|++||+++  ......+.+|...|.+++|+  +++++|+++
T Consensus       150 ~~~~~~~~~~~h~~~V~~l~~~~~~----~l~s~s~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~  223 (464)
T 3v7d_B          150 INKKFLLQLSGHDGGVWALKYAHGG----ILVSGSTDRTVRVWDIKK--GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG  223 (464)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECSTT----EEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEEESSSCEEEEEE
T ss_pred             CCCcEEEEEeCCCcCEEEEEEcCCC----EEEEEeCCCCEEEEECCC--CcEEEEECCCCCccEEEEEecCCCCCEEEEE
Confidence            4455677788999999999999985    899999999999999987  34557888999999999998  477899999


Q ss_pred             cCCCeEEEEEcCCCcee------------------------eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC
Q psy12911         95 GCDKTVKCWDLASNQSM------------------------QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT  150 (356)
Q Consensus        95 ~~dg~i~vwd~~~~~~~------------------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  150 (356)
                      +.|+.|++||+.++...                        ...+|...+.++.    +++.++++++.||.|++||+++
T Consensus       224 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~  299 (464)
T 3v7d_B          224 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQ  299 (464)
T ss_dssp             ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTT
T ss_pred             cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCC
Confidence            99999999999876532                        2567888888874    6688999999999999999999


Q ss_pred             CCceEEEeCCCe---eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC
Q psy12911        151 PQPIMTINLPER---CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE  227 (356)
Q Consensus       151 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d  227 (356)
                      ++.+..+..+..   .+++++++..+++++.|+.|++||++++......  ..+...+.++++++      ..+++++.|
T Consensus       300 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~------~~l~s~s~d  371 (464)
T 3v7d_B          300 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL--QGHTALVGLLRLSD------KFLVSAAAD  371 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECS------SEEEEEETT
T ss_pred             CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE--eCCCCcEEEEEEcC------CEEEEEeCC
Confidence            999999886653   4556677789999999999999999887543322  35778899999874      489999999


Q ss_pred             CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC-CCCCccce
Q psy12911        228 GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP-SEAMDMSI  306 (356)
Q Consensus       228 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v  306 (356)
                      |.|++||++..  ....... +..           .+..++|+|++++|++++ ||.|++||+.+++.+.. +..|...|
T Consensus       372 g~v~vwd~~~~--~~~~~~~-~~~-----------~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v  436 (464)
T 3v7d_B          372 GSIRGWDANDY--SRKFSYH-HTN-----------LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQI  436 (464)
T ss_dssp             SEEEEEETTTC--CEEEEEE-CTT-----------CCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEE
T ss_pred             CcEEEEECCCC--ceeeeec-CCC-----------CccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcE
Confidence            99999999764  2222222 222           678899999999999998 89999999999999875 67889999


Q ss_pred             EEEEECCCCCEEEEEeccC
Q psy12911        307 STCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       307 ~~~~~s~~~~~l~~~s~~d  325 (356)
                      .+++|+  ++.+++++++|
T Consensus       437 ~~v~~~--~~~l~~~~~~~  453 (464)
T 3v7d_B          437 WSVNFK--GKTLVAAVEKD  453 (464)
T ss_dssp             EEEEEE--TTEEEEEEEET
T ss_pred             EEEEec--CCEEEEEEEeC
Confidence            999997  56666666655

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.4e-38  Score=259.62  Aligned_cols=245  Identities=16%  Similarity=0.220  Sum_probs=190.2

Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce--e-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEE
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS--M-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW  146 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw  146 (356)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|++||+.+++.  + .+.+|...|.+++|++..++++|++|+.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            45678999999999999999999999999999999988753  2 37789999999999832258999999999999999


Q ss_pred             eCCCCC--ceEEEeCCC---eeEEEecC--CCeEEEEecCCeEEEEeCCCCcc-ccccccCcccccceEEEeecCCCC--
Q psy12911        147 DLRTPQ--PIMTINLPE---RCYCADVD--YPLAVVGTAGRGIVLYQLEGKPQ-EFKKTESPLKYQNRCIAIFRDKKK--  216 (356)
Q Consensus       147 d~~~~~--~~~~~~~~~---~~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~--  216 (356)
                      |+++++  .+..+..+.   ..++++++  +..+++++.|+.|++||++.... ........|...+.+++|+|+...  
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            999874  455565554   34455555  56899999999999999987532 122333456778899999987311  


Q ss_pred             -----------CCCeEEEeecCCeEEEEEeCCCC-CCCcceeeeecCCCCCCCcccccceEEEEEeCCC----CEEEEEc
Q psy12911        217 -----------QPAGYGLGSVEGRVAIQYVNPAN-PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH----GTLATVG  280 (356)
Q Consensus       217 -----------~~~~~~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~----~~l~s~~  280 (356)
                                 .+.++++++.|+.|++||++... ...+..+.+|..           .|.+++|+|++    .+||+++
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~-----------~V~~v~~sp~~~~~~~~las~s  235 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD-----------WVRDVAWAPSIGLPTSTIASCS  235 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS-----------CEEEEECCCCSSCSCCEEEEEE
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC-----------ceEEEEecCCCCCCCceEEEEc
Confidence                       13689999999999999996432 134556777877           89999999987    8999999


Q ss_pred             CCCeEEEEEcCcc---e-ecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        281 SEGTFSFWDKDAR---T-KLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       281 ~dg~i~iwd~~~~---~-~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      .||+|++|++.+.   + ....+..|...|.+++|+|++++||+++.|.
T Consensus       236 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~  284 (316)
T 3bg1_A          236 QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN  284 (316)
T ss_dssp             TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred             CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence            9999999998763   1 2234557889999999999999999998665

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=7.3e-36  Score=260.28  Aligned_cols=280  Identities=17%  Similarity=0.260  Sum_probs=232.7

Q ss_pred             CceEEeCCCCCCe-eEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         20 KDFEVVSPPEDSI-SCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        20 ~~~~~~~~h~~~V-~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      +....+.+|.+.| .|+  ++++   ++|++|+.||.|++||+.+  ......+.+|...|.+++|+  +++|++++.||
T Consensus       109 ~~~~~l~~h~~~v~~~~--~~~g---~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg  179 (445)
T 2ovr_B          109 KSPKVLKGHDDHVITCL--QFCG---NRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDR  179 (445)
T ss_dssp             CCCEEEECSTTSCEEEE--EEET---TEEEEEETTSCEEEEETTT--CCEEEECCCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred             ceeEEecccCCCcEEEE--EEcC---CEEEEEECCCcEEEEECCC--CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCC
Confidence            4567788999875 554  4567   8999999999999999987  34557888999999999997  56999999999


Q ss_pred             eEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCCCeEEEE
Q psy12911         99 TVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYPLAVVG  176 (356)
Q Consensus        99 ~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  176 (356)
                      +|++||+.+++.+. +.+|...|.++.|+    +..+++|+.||.|++||+++++.+..+..+. .+.++.+++..++++
T Consensus       180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~  255 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG  255 (445)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEE
T ss_pred             eEEEEECCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEE
Confidence            99999999998876 77899999999986    4579999999999999999999999888765 567778888999999


Q ss_pred             ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG  256 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (356)
                      +.|+.|++||++++......  ..+...+.++.+  +    +..+++++.|+.|++||++..  +.+..+.+|..     
T Consensus       256 ~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~--~----~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~-----  320 (445)
T 2ovr_B          256 AYDFMVKVWDPETETCLHTL--QGHTNRVYSLQF--D----GIHVVSGSLDTSIRVWDVETG--NCIHTLTGHQS-----  320 (445)
T ss_dssp             ETTSCEEEEEGGGTEEEEEE--CCCSSCEEEEEE--C----SSEEEEEETTSCEEEEETTTC--CEEEEECCCCS-----
T ss_pred             cCCCEEEEEECCCCcEeEEe--cCCCCceEEEEE--C----CCEEEEEeCCCeEEEEECCCC--CEEEEEcCCcc-----
Confidence            99999999999876533222  246678889988  4    679999999999999999876  56777777776     


Q ss_pred             CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC---CccceEEEEECCCCCEEEEEeccCCcCCCccC
Q psy12911        257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA---MDMSISTCALNHNGQIFAYAVSYDWSKGHEHN  333 (356)
Q Consensus       257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~  333 (356)
                            .+.++.+  ++++|++++.||.|++||+.+++.+..+..   |...|.+++|+  +++|++|+.|+   ...+|
T Consensus       321 ------~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg---~v~iw  387 (445)
T 2ovr_B          321 ------LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG---TVKLW  387 (445)
T ss_dssp             ------CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS---EEEEE
T ss_pred             ------cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC---eEEEE
Confidence                  7888777  467999999999999999999988887775   88899999995  68999998655   34445


Q ss_pred             CCCCCce
Q psy12911        334 NPNKGNA  340 (356)
Q Consensus       334 ~~~~~~~  340 (356)
                      +...+..
T Consensus       388 d~~~~~~  394 (445)
T 2ovr_B          388 DLKTGEF  394 (445)
T ss_dssp             ETTTCCE
T ss_pred             ECCCCce
Confidence            5444443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.3e-37  Score=267.78  Aligned_cols=272  Identities=14%  Similarity=0.170  Sum_probs=214.6

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc--eeeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEEEEEc
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK--TIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDL  105 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~  105 (356)
                      ......++++|+.  ..++++++.||.|+||++...+.  .....+.+|...|++++|+| ++++|++|+.||.|++||+
T Consensus        34 ~~~~~~~~~~~~~--~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~  111 (402)
T 2aq5_A           34 TWDSGFCAVNPKF--MALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI  111 (402)
T ss_dssp             CCSSCSEEECSSE--EEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred             ccCCCcEEECCCe--EEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Confidence            3455678899986  23445678999999999976433  23456788999999999999 9999999999999999999


Q ss_pred             CCCc-------ee-eecccCCCeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEE--eCCC-e--eEEEecCCC
Q psy12911        106 ASNQ-------SM-QVAQHDAPVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTI--NLPE-R--CYCADVDYP  171 (356)
Q Consensus       106 ~~~~-------~~-~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~-~--~~~~~~~~~  171 (356)
                      .++.       .+ .+.+|...|.+++|+  |++ .+|++++.||.|++||+++++.+..+  ..+. .  .+++++++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  189 (402)
T 2aq5_A          112 PDGGLVLPLREPVITLEGHTKRVGIVAWH--PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA  189 (402)
T ss_dssp             CTTCCSSCBCSCSEEEECCSSCEEEEEEC--SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS
T ss_pred             cCCCCccccCCceEEecCCCCeEEEEEEC--cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC
Confidence            9873       33 377899999999999  887 69999999999999999999999888  4443 3  445556778


Q ss_pred             eEEEEecCCeEEEEeCCCCccccccccCcccc-cceEEEeecCCCCCCCeEEEe---ecCCeEEEEEeCCCCCCCcceee
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKY-QNRCIAIFRDKKKQPAGYGLG---SVEGRVAIQYVNPANPKDNFTFK  247 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~---~~dg~i~i~~~~~~~~~~~~~~~  247 (356)
                      .+++++.|+.|++||++++........ .+.. .+.++.|+|+    +.++++|   +.++.|++||++.... ......
T Consensus       190 ~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~l~~g~~~~~d~~i~iwd~~~~~~-~~~~~~  263 (402)
T 2aq5_A          190 LICTSCRDKRVRVIEPRKGTVVAEKDR-PHEGTRPVHAVFVSE----GKILTTGFSRMSERQVALWDTKHLEE-PLSLQE  263 (402)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEEC-SSCSSSCCEEEECST----TEEEEEEECTTCCEEEEEEETTBCSS-CSEEEE
T ss_pred             EEEEEecCCcEEEEeCCCCceeeeecc-CCCCCcceEEEEcCC----CcEEEEeccCCCCceEEEEcCccccC-CceEEe
Confidence            999999999999999998754333212 3333 4899999999    7888888   7999999999976532 222222


Q ss_pred             -eecCCCCCCCcccccceEEEEEeCCCCEEE-EEcCCCeEEEEEcCccee-cCCCCC--CccceEEEEECCCCCEEEEE
Q psy12911        248 -CHRSNGGAGGVQDIYAVNGIVFHPVHGTLA-TVGSEGTFSFWDKDARTK-LKPSEA--MDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       248 -~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~-s~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~~~~s~~~~~l~~~  321 (356)
                       .+..           .+.+++|+|++++|+ +++.||.|++||+.+++. +..+..  |...|.+++|+|++.+++++
T Consensus       264 ~~~~~-----------~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~  331 (402)
T 2aq5_A          264 LDTSS-----------GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK  331 (402)
T ss_dssp             CCCCS-----------SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred             ccCCC-----------ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec
Confidence             2333           799999999999886 566799999999998773 334433  56899999999999988754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-36  Score=281.78  Aligned_cols=293  Identities=16%  Similarity=0.126  Sum_probs=209.9

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceee---------eeeccCCcceeEEEEccC-CC
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIP---------KSMQGMSEPVLDVAWIDD-GT   89 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~---------~~~~~~~~~v~~~~~s~~-~~   89 (356)
                      +.+..+. |.+.|++++|+|++   ++|++|+.||.|++||+++......         ..+.+|.++|.+++|+|+ +.
T Consensus        90 ~~~~~~~-~~~~V~~v~~sp~g---~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~  165 (902)
T 2oaj_A           90 KVLTTVF-VPGKITSIDTDASL---DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG  165 (902)
T ss_dssp             SEEEEEE-CSSCEEEEECCTTC---SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred             cEEEEEc-CCCCEEEEEECCCC---CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC
Confidence            3444454 67899999999999   9999999999999999987322100         234679999999999995 57


Q ss_pred             eEEEEcCCCeEEEEEcCCCceee-eccc------------------CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC
Q psy12911         90 KVFMAGCDKTVKCWDLASNQSMQ-VAQH------------------DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT  150 (356)
Q Consensus        90 ~l~~~~~dg~i~vwd~~~~~~~~-~~~~------------------~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  150 (356)
                      .|++|+.|+.| +||+++++.+. +..|                  ...|.+++|+  |++.+|++++.||.|++||+++
T Consensus       166 ~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs--pdg~~lasgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          166 TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH--PNSLHIITIHEDNSLVFWDANS  242 (902)
T ss_dssp             EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC--TTSSEEEEEETTCCEEEEETTT
T ss_pred             EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc--CCCCEEEEEECCCeEEEEECCC
Confidence            89999999999 99999988765 3333                  5789999999  9999999999999999999988


Q ss_pred             CCceEEEe-----CC-------------C-eeEEEec----CC---C---------------------------------
Q psy12911        151 PQPIMTIN-----LP-------------E-RCYCADV----DY---P---------------------------------  171 (356)
Q Consensus       151 ~~~~~~~~-----~~-------------~-~~~~~~~----~~---~---------------------------------  171 (356)
                      ++++....     .+             . .+.++.+    ..   .                                 
T Consensus       243 g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~  322 (902)
T 2oaj_A          243 GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE  322 (902)
T ss_dssp             CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred             CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchh
Confidence            87654311     01             1 1222221    00   1                                 


Q ss_pred             -------------------------------------------eEEEEecCCeEEEEeCCCCccccc-----cccCcccc
Q psy12911        172 -------------------------------------------LAVVGTAGRGIVLYQLEGKPQEFK-----KTESPLKY  203 (356)
Q Consensus       172 -------------------------------------------~~~~~~~d~~i~i~d~~~~~~~~~-----~~~~~~~~  203 (356)
                                                                 .+++++.|+.|++||+.++.....     .....+..
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~  402 (902)
T 2oaj_A          323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP  402 (902)
T ss_dssp             HHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT
T ss_pred             hhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC
Confidence                                                       234444556666776644321110     00011112


Q ss_pred             cceE----------------------------------EEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee--
Q psy12911        204 QNRC----------------------------------IAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK--  247 (356)
Q Consensus       204 ~i~~----------------------------------~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~--  247 (356)
                      .+++                                  ++|+|+    +..+++|+.|++|++||+..........+.  
T Consensus       403 ~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd----g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~  478 (902)
T 2oaj_A          403 LATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY----GTAFITGHSNGSVRIYDASHGDIQDNASFEVN  478 (902)
T ss_dssp             BEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE----EEEEEEEETTSEEEEEESSCCTTTTTBCEEEE
T ss_pred             CeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc----CcEEEEecCCCcEEEEECCCccccCCceEEee
Confidence            3333                                  444565    789999999999999999876322111221  


Q ss_pred             -------eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce--------------------------
Q psy12911        248 -------CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART--------------------------  294 (356)
Q Consensus       248 -------~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~--------------------------  294 (356)
                             +|..           .|++++|+|+|++||+|+.||+|+|||+.+++                          
T Consensus       479 l~~~~~~~h~~-----------~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (902)
T 2oaj_A          479 LSRTLNKAKEL-----------AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTN  547 (902)
T ss_dssp             HHHHTTCSSSC-----------CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSS
T ss_pred             chhhcCCCCCC-----------ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCc
Confidence                   3444           89999999999999999999999999998762                          


Q ss_pred             -------------------ecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCC
Q psy12911        295 -------------------KLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKG  338 (356)
Q Consensus       295 -------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~  338 (356)
                                         ++..+.+|.+.|++|+||||| +||+|+.|.   ...+|+...+
T Consensus       548 ~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~---tv~lwd~~~~  606 (902)
T 2oaj_A          548 GVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAG---SLMLIDRRGP  606 (902)
T ss_dssp             CSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTS---EEEEEETTTT
T ss_pred             cccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCC---cEEEEECCCC
Confidence                               356678899999999999999 999998654   3344554433

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3e-37  Score=262.05  Aligned_cols=248  Identities=13%  Similarity=0.190  Sum_probs=201.0

Q ss_pred             CCCCeeEEEecCCCCC-ceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEEEEEc
Q psy12911         28 PEDSISCMAFSPSTLP-QYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDL  105 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~  105 (356)
                      |...|++++|+|++.. +.+|++|+.||.|++||+.+  ......+.+|...|.+++|+| ++++|++++.||.|++||+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~  145 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI  145 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT--CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh--ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence            7789999999999310 17999999999999999987  344577889999999999999 9999999999999999999


Q ss_pred             CCCceeee----cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe-----------------------
Q psy12911        106 ASNQSMQV----AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN-----------------------  158 (356)
Q Consensus       106 ~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------------------  158 (356)
                      .+++....    ..|...|.+++|+  +++++|++++.||.|++||+++++.+..+.                       
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
T 3k26_A          146 QTDTLVAIFGGVEGHRDEVLSADYD--LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD  223 (366)
T ss_dssp             TTTEEEEEECSTTSCSSCEEEEEEC--TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred             ecCeEEEEecccccccCceeEEEEC--CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence            99887763    5799999999999  999999999999999999999875543332                       


Q ss_pred             ------CCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccc------------cccCcccccceEEEeecCCCCCCCe
Q psy12911        159 ------LPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFK------------KTESPLKYQNRCIAIFRDKKKQPAG  220 (356)
Q Consensus       159 ------~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~------------~~~~~~~~~i~~~~~~~~~~~~~~~  220 (356)
                            ....+.++.+.++.+++++.|+.|++||+++......            .....+...+.+++|+|+..  +.+
T Consensus       224 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~~~  301 (366)
T 3k26_A          224 FSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW--QKM  301 (366)
T ss_dssp             EEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT--SSE
T ss_pred             cccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC--CcE
Confidence                  2334556666688999999999999999987654211            11223556788899998731  578


Q ss_pred             EEEeecCCeEEEEEeCCCCCC--Ccceeeee--cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        221 YGLGSVEGRVAIQYVNPANPK--DNFTFKCH--RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       221 ~~~~~~dg~i~i~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                      +++++.||.|++|+++.....  ....+..|  ..           .|++++|+|++++|++++.||.|++||+.+
T Consensus       302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGA-----------AIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCS-----------CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEEEecCCcEEEEECCCCCCccccceEEcccccCC-----------ceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            999999999999999876321  22355555  33           899999999999999999999999999853

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.9e-36  Score=295.12  Aligned_cols=248  Identities=19%  Similarity=0.306  Sum_probs=203.2

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc--CCCeEEEE
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID--DGTKVFMA   94 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~   94 (356)
                      ...+.+..+.+|.+.|.+++|+|++   ++|++|+.||.|+|||+.+  ......+.+|...|.+++|+|  ++.+++++
T Consensus       645 ~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg  719 (1249)
T 3sfz_A          645 ETGEKLLDIKAHEDEVLCCAFSSDD---SYIATCSADKKVKIWDSAT--GKLVHTYDEHSEQVNCCHFTNKSNHLLLATG  719 (1249)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred             CCCCEEEEeccCCCCEEEEEEecCC---CEEEEEeCCCeEEEEECCC--CceEEEEcCCCCcEEEEEEecCCCceEEEEE
Confidence            3456677888999999999999999   9999999999999999988  345578889999999999999  55689999


Q ss_pred             cCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC------------
Q psy12911         95 GCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE------------  161 (356)
Q Consensus        95 ~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------  161 (356)
                      +.|+.|++||+.+++... +.+|...|.+++|+  |+++++++++.||.|++||+++++....+....            
T Consensus       720 ~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s--p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (1249)
T 3sfz_A          720 SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS--PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV  797 (1249)
T ss_dssp             ETTSCEEEEETTSSSEEEEECCCSSCEEEEEEC--SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CC
T ss_pred             eCCCeEEEEECCCcchhheecCCCCCEEEEEEe--cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccc
Confidence            999999999999998776 77899999999999  999999999999999999999988777765322            


Q ss_pred             ----eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        162 ----RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       162 ----~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                          ..+++++++..+++++ ++.+.+||+.++..... ....+...+.+++|+|+    +..+++++.++.+++|++..
T Consensus       798 ~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~sp~----~~~l~~~~~dg~v~vwd~~~  871 (1249)
T 3sfz_A          798 EVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAE-IHTGHHSTIQYCDFSPY----DHLAVIALSQYCVELWNIDS  871 (1249)
T ss_dssp             CCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEE-EECSSSSCCCEEEECSS----TTEEEEECSSSCEEEEETTT
T ss_pred             cceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeE-EcCCCCCceEEEEEcCC----CCEEEEEeCCCeEEEEEcCC
Confidence                2345566667777766 78999999998754333 33367789999999999    88999999999999999976


Q ss_pred             CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                      .  ..+..+.+|..           .|.+++|+|+|++|++++.||.|++||+
T Consensus       872 ~--~~~~~~~~h~~-----------~v~~v~~spdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          872 R--LKVADCRGHLS-----------WVHGVMFSPDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             T--EEEEEECCCSS-----------CEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred             C--ceeeecCCCcc-----------ceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            5  45666666665           5666666666666666666666666653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.9e-36  Score=257.29  Aligned_cols=247  Identities=16%  Similarity=0.204  Sum_probs=201.4

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  106 (356)
                      .|...|++++|+|++   ++|++|+.||.|++||+.+  ......+.+|...|.+++|  ++++|++++.||.|++||++
T Consensus       132 ~~~~~v~~v~~s~~~---~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~  204 (401)
T 4aez_A          132 DESTYVASVKWSHDG---SFLSVGLGNGLVDIYDVES--QTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVR  204 (401)
T ss_dssp             CTTCCEEEEEECTTS---SEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEECCCC---CEEEEECCCCeEEEEECcC--CeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecc
Confidence            489999999999999   9999999999999999987  3455778899999999999  46799999999999999998


Q ss_pred             C-Cceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEecCCC-eEEEEe--c
Q psy12911        107 S-NQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCADVDYP-LAVVGT--A  178 (356)
Q Consensus       107 ~-~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~--~  178 (356)
                      . +.... +.+|...|.+++|+  +++.+|++++.|+.|++||+++++.+..+..+.   ..+++++.+. .+++++  .
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~  282 (401)
T 4aez_A          205 IANHQIGTLQGHSSEVCGLAWR--SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM  282 (401)
T ss_dssp             SSSCEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred             cCcceeeEEcCCCCCeeEEEEc--CCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCC
Confidence            4 33333 77899999999999  899999999999999999999999888887554   3455555554 555544  6


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEE--eecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL--GSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG  256 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (356)
                      |+.|++||++++......   .+...+.+++|+|+    +..+++  |+.||.|++|++..........+.+|..     
T Consensus       283 d~~i~i~d~~~~~~~~~~---~~~~~v~~~~~s~~----~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~-----  350 (401)
T 4aez_A          283 DKQIHFWNAATGARVNTV---DAGSQVTSLIWSPH----SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT-----  350 (401)
T ss_dssp             TCEEEEEETTTCCEEEEE---ECSSCEEEEEECSS----SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS-----
T ss_pred             CCEEEEEECCCCCEEEEE---eCCCcEEEEEECCC----CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC-----
Confidence            999999999987543322   35678999999999    788888  4489999999998754444555677776     


Q ss_pred             CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC
Q psy12911        257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE  300 (356)
Q Consensus       257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  300 (356)
                            .|.+++|+|++++|++++.||.|++||+.+++.+....
T Consensus       351 ------~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          351 ------RVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             ------CCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             ------CEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence                  89999999999999999999999999999988776543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-36  Score=283.02  Aligned_cols=280  Identities=10%  Similarity=0.129  Sum_probs=205.3

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccC------------------CcceeEEEEcc
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM------------------SEPVLDVAWID   86 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~------------------~~~v~~~~~s~   86 (356)
                      +.+|.+.|++++|+|++  ...|++|+.||.| +||+.+.  .....+..|                  ...|.+++|+|
T Consensus       147 ~~~h~~~V~sl~~sp~~--~~~l~~g~~dg~v-lWd~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp  221 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRD--IGTVLISYEYVTL-TYSLVEN--EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP  221 (902)
T ss_dssp             SSSCCCCCCEEEEETTE--EEEEEEECSSCEE-EEETTTT--EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred             cccCCCCeEEEEEccCC--CCEEEEEeCCCcE-EEECCCC--ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence            47899999999999964  2789999999999 9999873  333455444                  57899999999


Q ss_pred             CCCeEEEEcCCCeEEEEEcCCCceeee------cc-------------cCCCeeEEEEEeC--CCC-CeEEEEECC----
Q psy12911         87 DGTKVFMAGCDKTVKCWDLASNQSMQV------AQ-------------HDAPVKTCHWIKA--PNY-TCLMTGSWD----  140 (356)
Q Consensus        87 ~~~~l~~~~~dg~i~vwd~~~~~~~~~------~~-------------~~~~v~~~~~~~~--~~~-~~l~~~~~d----  140 (356)
                      +|++|++++.||.|++||+++++.+..      ..             |...|.+++|++.  |++ .+|++|+.|    
T Consensus       222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~  301 (902)
T 2oaj_A          222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD  301 (902)
T ss_dssp             TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred             CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence            999999999999999999998886542      11             3457999999742  332 445555443    


Q ss_pred             -CeEEEEe-----------------------------------------------------------------------C
Q psy12911        141 -KTLKFWD-----------------------------------------------------------------------L  148 (356)
Q Consensus       141 -g~i~iwd-----------------------------------------------------------------------~  148 (356)
                       ..+.+|+                                                                       +
T Consensus       302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~  381 (902)
T 2oaj_A          302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY  381 (902)
T ss_dssp             CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred             CceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC
Confidence             1455554                                                                       3


Q ss_pred             CCCCceEE-------EeCC-Cee------------------------------------EEEecCCCeEEEEecCCeEEE
Q psy12911        149 RTPQPIMT-------INLP-ERC------------------------------------YCADVDYPLAVVGTAGRGIVL  184 (356)
Q Consensus       149 ~~~~~~~~-------~~~~-~~~------------------------------------~~~~~~~~~~~~~~~d~~i~i  184 (356)
                      .++.....       +..+ ..+                                    ++++++++.+++++.|++|++
T Consensus       382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrl  461 (902)
T 2oaj_A          382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRI  461 (902)
T ss_dssp             TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEE
T ss_pred             CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEE
Confidence            32211100       0000 000                                    112234568999999999999


Q ss_pred             EeCCCCcccccc---------ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC---------------
Q psy12911        185 YQLEGKPQEFKK---------TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP---------------  240 (356)
Q Consensus       185 ~d~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~---------------  240 (356)
                      ||+.++......         ....|...|.+++|+|+    +..|++|+.||+|++|++.....               
T Consensus       462 Wd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspd----g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~  537 (902)
T 2oaj_A          462 YDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAE----TLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMN  537 (902)
T ss_dssp             EESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETT----TTEEEEEETTSCEEEEEEEECCC---------------
T ss_pred             EECCCccccCCceEEeechhhcCCCCCCceeEEEecCC----CCeEEEEecCcEEEEEEecCccccCccccCCCccccee
Confidence            999887421100         01256678999999999    88999999999999999975421               


Q ss_pred             ----------------------------CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        241 ----------------------------KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       241 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                                                  +++..+.+|..           .|++++||||| +||+|+.|++|++||+++
T Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~-----------~V~svafSpdG-~lAsgs~D~tv~lwd~~~  605 (902)
T 2oaj_A          538 FRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG-----------KTSAINNSNIG-FVGIAYAAGSLMLIDRRG  605 (902)
T ss_dssp             CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC-----------SEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred             eeeccccCCccccccccccCCCCCCCccceeEEEEcCCC-----------cEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence                                        11344555555           89999999999 999999999999999988


Q ss_pred             ceec-----CCCC-CCccceEEEEEC-----CCC---CEEEEEeccC
Q psy12911        293 RTKL-----KPSE-AMDMSISTCALN-----HNG---QIFAYAVSYD  325 (356)
Q Consensus       293 ~~~~-----~~~~-~~~~~v~~~~~s-----~~~---~~l~~~s~~d  325 (356)
                      +..+     ..+. +|.+.|++++|+     |||   ++|++|+.|.
T Consensus       606 ~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~  652 (902)
T 2oaj_A          606 PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG  652 (902)
T ss_dssp             TEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred             CeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence            7654     3564 899999999999     886   8999999776

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4.1e-36  Score=253.69  Aligned_cols=275  Identities=13%  Similarity=0.118  Sum_probs=204.5

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeE-EEEcCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV-FMAGCD   97 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d   97 (356)
                      .+.+....+|.+.|++++|+|+|   ++|++|+.++ ++||++++.  ......  +...+..+++.++++.+ ++++.|
T Consensus         9 ~~~~~~~~~h~~~V~~v~fs~dg---~~la~g~~~~-~~iw~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d   80 (355)
T 3vu4_A            9 RNPIVPENHVSNPVTDYEFNQDQ---SCLILSTLKS-FEIYNVHPV--AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVK   80 (355)
T ss_dssp             ----------CCCCCEEEECTTS---SEEEEECSSE-EEEEEETTE--EEEEEE--ECSCCCEEEECTTSSEEEEECSST
T ss_pred             cCCccccccCCCceEEEEECCCC---CEEEEEcCCE-EEEEecCCc--ceeeee--ecCCeEEEEEcCCCCEEEEEECCc
Confidence            34455668899999999999999   9999998775 789998872  222222  22358889999988877 567778


Q ss_pred             CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeCCCeeEEEecCCCeEEE-
Q psy12911         98 KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINLPERCYCADVDYPLAVV-  175 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-  175 (356)
                      ++|++||+.+++.+....+...|.++.|+  ++.  ++++ .|+.|++||+.++ +.+..+..+....++++  ..+++ 
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~~v~~v~~~--~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~  153 (355)
T 3vu4_A           81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLS--REF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYS  153 (355)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCEEEEEEC--SSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEE
T ss_pred             cEEEEEECCCCcEEEEEECCCceEEEEEc--CCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEe
Confidence            99999999999988866788899999998  653  4444 3789999999988 77666665444555555  66665 


Q ss_pred             -EecCCeEEEEeCCCCcc--------------ccccccCcccccceEEEeecCCCCCCCeEEEeecCCe-EEEEEeCCCC
Q psy12911        176 -GTAGRGIVLYQLEGKPQ--------------EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGR-VAIQYVNPAN  239 (356)
Q Consensus       176 -~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~  239 (356)
                       ++.+|.|++||++++..              +.......|...|.+++|+|+    +.++++++.|+. |++||++.. 
T Consensus       154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~----g~~l~s~s~d~~~v~iwd~~~~-  228 (355)
T 3vu4_A          154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK----SDMVATCSQDGTIIRVFKTEDG-  228 (355)
T ss_dssp             ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT----SSEEEEEETTCSEEEEEETTTC-
T ss_pred             CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC----CCEEEEEeCCCCEEEEEECCCC-
Confidence             57899999999987541              002233468889999999999    889999999998 999999866 


Q ss_pred             CCCcceee-e-ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC--CCC---------------
Q psy12911        240 PKDNFTFK-C-HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK--PSE---------------  300 (356)
Q Consensus       240 ~~~~~~~~-~-~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~---------------  300 (356)
                       +.+..+. + |..           .|++++|+|++++|++++.|++|++||+..+....  .+.               
T Consensus       229 -~~~~~~~~g~h~~-----------~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (355)
T 3vu4_A          229 -VLVREFRRGLDRA-----------DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLC  296 (355)
T ss_dssp             -CEEEEEECTTCCS-----------CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSE
T ss_pred             -cEEEEEEcCCCCC-----------cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccccee
Confidence             6677777 4 666           89999999999999999999999999997653211  111               


Q ss_pred             ------CCccceEEEEECCCCCEEEEEeccC
Q psy12911        301 ------AMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       301 ------~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                            ........++|++||++|++++.|+
T Consensus       297 ~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg  327 (355)
T 3vu4_A          297 NFKLSVDKHVRGCKIAWISESSLVVVWPHTR  327 (355)
T ss_dssp             EEECCCCTTCCCCEEEESSSSEEEEEETTTT
T ss_pred             EEEeccCCCCCceEEEEeCCCCEEEEEeCCC
Confidence                  1122346799999999999998765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.7e-36  Score=270.95  Aligned_cols=280  Identities=15%  Similarity=0.224  Sum_probs=233.1

Q ss_pred             CceEEeCCCCCC-eeEEEecC--CCCCceEEEEEeCCCeEEEEeccCC------CceeeeeeccCCcceeEEEEccCCCe
Q psy12911         20 KDFEVVSPPEDS-ISCMAFSP--STLPQYFLIAGSWDNNVRCWEVEPN------GKTIPKSMQGMSEPVLDVAWIDDGTK   90 (356)
Q Consensus        20 ~~~~~~~~h~~~-V~~~~~~~--~~~~~~~l~~~~~dg~i~vw~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~   90 (356)
                      +....+.+|.+. |++++|+|  ++   ++|++|+.||.|+|||+.++      .......+..|...|.+++|+|++++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~---~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  130 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGS---QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR  130 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTC---CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             ccceEEecCCCceEEEEEECcCCCC---CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCE
Confidence            677889999999 99999999  99   99999999999999999753      24566778889999999999999999


Q ss_pred             EEEEcCC----CeEEEEEcCCCcee-eecccCCCeeEEEEEeCCCCC-eEEEEECCCeEEEEeCCCCCceEEEeCCCe--
Q psy12911         91 VFMAGCD----KTVKCWDLASNQSM-QVAQHDAPVKTCHWIKAPNYT-CLMTGSWDKTLKFWDLRTPQPIMTINLPER--  162 (356)
Q Consensus        91 l~~~~~d----g~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--  162 (356)
                      |++++.+    +.|++||  .++.. .+.+|...|.+++|+  |++. ++++++.|+.|++||+.+++.+..+..+..  
T Consensus       131 l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  206 (615)
T 1pgu_A          131 LCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLK--QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG  206 (615)
T ss_dssp             EEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEEC--SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred             EEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEEC--CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCC
Confidence            9999987    6899998  34444 478899999999999  8887 899999999999999999999999886654  


Q ss_pred             --e--EEEecC-CCeEEEEecCCeEEEEeCCCCccccccccC--cccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911        163 --C--YCADVD-YPLAVVGTAGRGIVLYQLEGKPQEFKKTES--PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV  235 (356)
Q Consensus       163 --~--~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  235 (356)
                        +  ++++++ +..+++++.|+.|++||++++.........  .+...+.+++|+ +    +..+++++.|+.+++||+
T Consensus       207 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~----~~~l~~~~~d~~i~~wd~  281 (615)
T 1pgu_A          207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-D----SQKFATVGADATIRVWDV  281 (615)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-S----SSEEEEEETTSEEEEEET
T ss_pred             ceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-C----CCEEEEEcCCCcEEEEEC
Confidence              4  455566 779999999999999999887543322111  577899999999 7    789999999999999999


Q ss_pred             CCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCC
Q psy12911        236 NPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNG  315 (356)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  315 (356)
                      +..  +.+..+..+..       .....+.++.|+ ++.++++++.||.|++||+.+++.+..+.+|...|++++| |+ 
T Consensus       282 ~~~--~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-  349 (615)
T 1pgu_A          282 TTS--KCVQKWTLDKQ-------QLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-  349 (615)
T ss_dssp             TTT--EEEEEEECCTT-------CGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-
T ss_pred             CCC--cEEEEEcCCCC-------cccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-
Confidence            765  45556655521       001168888886 8899999999999999999999999999999999999999 77 


Q ss_pred             CEEEEEeccC
Q psy12911        316 QIFAYAVSYD  325 (356)
Q Consensus       316 ~~l~~~s~~d  325 (356)
                        |++++.|+
T Consensus       350 --l~~~~~dg  357 (615)
T 1pgu_A          350 --LISGSYDG  357 (615)
T ss_dssp             --TEEEETTS
T ss_pred             --cEEECCCC
Confidence              66666544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.2e-35  Score=272.56  Aligned_cols=254  Identities=18%  Similarity=0.283  Sum_probs=201.6

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      ....+.+|...|.+++|+|++   ++|++|+.||+|+|||+.+  ......+.+|...|.+++|+|++++|++++.|++|
T Consensus       422 ~~~~~~~h~~~v~~v~~s~~g---~~l~sgs~Dg~v~vwd~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i  496 (694)
T 3dm0_A          422 AQRRLTGHSHFVEDVVLSSDG---QFALSGSWDGELRLWDLAA--GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI  496 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             ccceecCCCCcEEEEEECCCC---CEEEEEeCCCcEEEEECCC--CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence            345688999999999999999   9999999999999999987  34557888999999999999999999999999999


Q ss_pred             EEEEcCCCceeee----cccCCCeeEEEEEeCCCC--CeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCC
Q psy12911        101 KCWDLASNQSMQV----AQHDAPVKTCHWIKAPNY--TCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYP  171 (356)
Q Consensus       101 ~vwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~  171 (356)
                      ++||+........    .+|...|.+++|+  +++  ..|++++.|+.|++||+++++....+..|..   .+++++++.
T Consensus       497 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~  574 (694)
T 3dm0_A          497 KLWNTLGECKYTISEGGEGHRDWVSCVRFS--PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS  574 (694)
T ss_dssp             EEECTTSCEEEEECSSTTSCSSCEEEEEEC--SCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             EEEECCCCcceeeccCCCCCCCcEEEEEEe--CCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC
Confidence            9999876554432    4688999999999  654  6899999999999999999999998887763   456667778


Q ss_pred             eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS  251 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  251 (356)
                      .+++++.|+.|++||++++......   .....+.+++|+|+    +..++ ++.++.|++||++..  ..+..+..+..
T Consensus       575 ~l~sg~~Dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~----~~~l~-~~~~~~i~iwd~~~~--~~~~~~~~~~~  644 (694)
T 3dm0_A          575 LCASGGKDGVVLLWDLAEGKKLYSL---EANSVIHALCFSPN----RYWLC-AATEHGIKIWDLESK--SIVEDLKVDLK  644 (694)
T ss_dssp             EEEEEETTSBCEEEETTTTEEEECC---BCSSCEEEEEECSS----SSEEE-EEETTEEEEEETTTT--EEEEEECCCCC
T ss_pred             EEEEEeCCCeEEEEECCCCceEEEe---cCCCcEEEEEEcCC----CcEEE-EEcCCCEEEEECCCC--CChhhhccccc
Confidence            9999999999999999987543322   24567899999998    55554 456677999999765  33333332211


Q ss_pred             CC--------CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        252 NG--------GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       252 ~~--------~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      ..        ......+...+++++|+|+|++|++|+.||+|+||++.
T Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          645 AEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            00        00001111247899999999999999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-36  Score=279.28  Aligned_cols=249  Identities=18%  Similarity=0.263  Sum_probs=201.9

Q ss_pred             eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC--CCeEEEEcCCCe
Q psy12911         22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD--GTKVFMAGCDKT   99 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~   99 (356)
                      ..++.+|.+.|++++|+|++   ++|++|+.||.|+|||+..........+.+|..+|++++|+|+  +++|++|+.||.
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg---~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~   78 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYG---KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (753)
T ss_dssp             ------CCCCEEEECCCSSS---CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred             eeecccCcceeEEEEECCCC---CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence            35688999999999999999   9999999999999999986445666788999999999999987  999999999999


Q ss_pred             EEEEEcCCCc--ee-eecccCCCeeEEEEEeCCC--CCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEE
Q psy12911        100 VKCWDLASNQ--SM-QVAQHDAPVKTCHWIKAPN--YTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAV  174 (356)
Q Consensus       100 i~vwd~~~~~--~~-~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (356)
                      |++||+.+++  .. ....|...|.+++|+  |+  +..+++|+.||.|++||++++.......                
T Consensus        79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~s--p~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~----------------  140 (753)
T 3jro_A           79 VLIWKEENGRWSQIAVHAVHSASVNSVQWA--PHEYGPLLLVASSDGKVSVVEFKENGTTSPII----------------  140 (753)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEEC--CGGGCSEEEEEETTSEEEEEECCSSSCCCCEE----------------
T ss_pred             EEEEECCCCcccccccccCCCCCeEEEEEC--CCCCCCEEEEEeCCCcEEEEEeecCCCcceeE----------------
Confidence            9999999986  33 367899999999999  77  9999999999999999998763321111                


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCC---------CCCCCeEEEeecCCeEEEEEeCCCCC--CCc
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDK---------KKQPAGYGLGSVEGRVAIQYVNPANP--KDN  243 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~dg~i~i~~~~~~~~--~~~  243 (356)
                                             ...+...+.+++|+|..         ..++..+++|+.||.|++||++....  ...
T Consensus       141 -----------------------~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~  197 (753)
T 3jro_A          141 -----------------------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  197 (753)
T ss_dssp             -----------------------EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             -----------------------eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence                                   01244567777777720         00167899999999999999976532  234


Q ss_pred             ceeeeecCCCCCCCcccccceEEEEEeCC---CCEEEEEcCCCeEEEEEcCcce-----ecCCCCCCccceEEEEECCCC
Q psy12911        244 FTFKCHRSNGGAGGVQDIYAVNGIVFHPV---HGTLATVGSEGTFSFWDKDART-----KLKPSEAMDMSISTCALNHNG  315 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~---~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~  315 (356)
                      ..+.+|..           .|++++|+|+   +++|++++.||.|++||+.+++     .+.....|...|++++|+|+|
T Consensus       198 ~~~~~h~~-----------~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg  266 (753)
T 3jro_A          198 STLEGHSD-----------WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG  266 (753)
T ss_dssp             EEECCCSS-----------CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT
T ss_pred             eeecCCCC-----------cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC
Confidence            45666766           8999999999   8999999999999999998864     444556788999999999999


Q ss_pred             CEEEEEeccC
Q psy12911        316 QIFAYAVSYD  325 (356)
Q Consensus       316 ~~l~~~s~~d  325 (356)
                      ++|++++.|+
T Consensus       267 ~~l~s~s~Dg  276 (753)
T 3jro_A          267 NVLALSGGDN  276 (753)
T ss_dssp             CCEEEECSSS
T ss_pred             CEEEEEcCCC
Confidence            9999998766

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.9e-35  Score=253.64  Aligned_cols=259  Identities=17%  Similarity=0.217  Sum_probs=200.5

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD  104 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  104 (356)
                      +.+|...|++|+|+|+|   ++||+|+.||.|+|||+++  ...+..+.+|...+.+++++  +..|++|+.|+.+++||
T Consensus       143 ~~~~~~~V~sv~fspdg---~~lasgs~Dg~v~iWd~~~--~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d  215 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEG---NYLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHD  215 (420)
T ss_dssp             CCSTTCCEEEEEECTTS---SEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred             ecCCCCcEEEEEECCCC---CEEEEEECCCeEEEEEcCC--CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEee
Confidence            45788899999999999   9999999999999999988  45567889999999998875  67999999999999999


Q ss_pred             cCCCcee--eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC----ceEEEeCCC-ee--EEEecCCC-eEE
Q psy12911        105 LASNQSM--QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ----PIMTINLPE-RC--YCADVDYP-LAV  174 (356)
Q Consensus       105 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~-~~--~~~~~~~~-~~~  174 (356)
                      .......  .+.+|...+..+.|+  +++.++++++.|+.+++||..+++    .+.....+. .+  +.+.+... .++
T Consensus       216 ~~~~~~~~~~~~~h~~~~~~~~~~--~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la  293 (420)
T 4gga_A          216 VRVAEHHVATLSGHSQEVCGLRWA--PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  293 (420)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred             ecccceeeEEecccccceeeeeec--CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence            9875543  378899999999999  999999999999999999998775    334444433 33  34444443 444


Q ss_pred             E--EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee--cCCeEEEEEeCCCCCCCcceeeeec
Q psy12911        175 V--GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS--VEGRVAIQYVNPANPKDNFTFKCHR  250 (356)
Q Consensus       175 ~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~  250 (356)
                      +  |+.|+.|++||+.++......   .....+.++.++++    +..+++++  .|+.|++||+...  +.+.++.+|.
T Consensus       294 ~~~gs~D~~I~iwd~~t~~~~~~~---~~~~~v~~~~~~~~----~~~lv~~sg~~d~~I~iwd~~~~--~~v~~l~gH~  364 (420)
T 4gga_A          294 TGGGTSDRHIRIWNVCSGACLSAV---DAHSQVCSILWSPH----YKELISGHGFAQNQLVIWKYPTM--AKVAELKGHT  364 (420)
T ss_dssp             EEECTTTCEEEEEETTTTEEEEEE---ECSSCEEEEEEETT----TTEEEEEECTTTCCEEEEETTTC--CEEEEECCCS
T ss_pred             EEeecCCCEEEEEeCCccccceee---ccccceeeeeecCC----CCeEEEEEecCCCEEEEEECCCC--cEEEEEcCCC
Confidence            4  457999999999987643332   23567899999999    66776654  7899999999766  6788899998


Q ss_pred             CCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEEC
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALN  312 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  312 (356)
                      .           .|++++|+|+|++|++|+.|++|+|||+.+..+....+.+...+....|.
T Consensus       365 ~-----------~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~  415 (420)
T 4gga_A          365 S-----------RVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLI  415 (420)
T ss_dssp             S-----------CEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------------
T ss_pred             C-----------CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccC
Confidence            8           89999999999999999999999999998777666666555544444443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.7e-35  Score=246.06  Aligned_cols=257  Identities=16%  Similarity=0.204  Sum_probs=205.1

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      ....+.+|...|.+++|+|++   ++|++|+.|+.|++|+...  .........+...+..+.+++++++|++++.|+.+
T Consensus        78 ~~~~l~~h~~~V~~~~~s~dg---~~l~s~~~d~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~  152 (340)
T 4aow_A           78 PQRALRGHSHFVSDVVISSDG---QFALSGSWDGTLRLWDLTT--GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI  152 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             eeEEEeCCCCCEEEEEECCCC---CEEEEEcccccceEEeecc--cceeeeecCCCCceeEEEEeecCccceeecCCCeE
Confidence            456789999999999999999   9999999999999999987  34445666788899999999999999999999999


Q ss_pred             EEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEE
Q psy12911        101 KCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVV  175 (356)
Q Consensus       101 ~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  175 (356)
                      ++||+.......  ..+|...+..++|++.+...++++++.|+.|++||+++++.+..+..+..   .+++++++.++++
T Consensus       153 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  232 (340)
T 4aow_A          153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS  232 (340)
T ss_dssp             EEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE
Confidence            999998766543  56789999999999555567889999999999999999999988887653   4556677789999


Q ss_pred             EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      ++.|+.|++||+++.......   .....+.++.++|+    + .+++++.|+.|++||++..  ..+..+..+..... 
T Consensus       233 ~s~Dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~----~-~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~-  301 (340)
T 4aow_A          233 GGKDGQAMLWDLNEGKHLYTL---DGGDIINALCFSPN----R-YWLCAATGPSIKIWDLEGK--IIVDELKQEVISTS-  301 (340)
T ss_dssp             EETTCEEEEEETTTTEEEEEE---ECSSCEEEEEECSS----S-SEEEEEETTEEEEEETTTT--EEEEEECCC------
T ss_pred             EeCCCeEEEEEeccCceeeee---cCCceEEeeecCCC----C-ceeeccCCCEEEEEECCCC--eEEEeccccceeee-
Confidence            999999999999987543322   23567899999997    3 5777888999999998754  22222221111000 


Q ss_pred             CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART  294 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~  294 (356)
                       ...+...|++++|+|+|++|++|+.||.|+|||+++|+
T Consensus       302 -~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          302 -SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             -ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence             01112289999999999999999999999999999886

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.8e-37  Score=262.04  Aligned_cols=236  Identities=14%  Similarity=0.197  Sum_probs=186.9

Q ss_pred             eccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC--ceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeC
Q psy12911         72 MQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN--QSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL  148 (356)
Q Consensus        72 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~  148 (356)
                      ...+.++|++++|+|++++|++++.|+.|++||+.++  +... +.+|...|.+++|+  |++++|++++.|+.|++||+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWA--PKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEEC--TTTCCEEEEETTSSEEEC--
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEe--CCCCEEEEEeCCCeEEEEEc
Confidence            3446789999999999999999999999999999987  4544 77899999999999  99999999999999999999


Q ss_pred             CCCC---ceEEEeCCC-ee--EEEecCCCeEEEEecCCeEEEEeCCCCcc--ccccccCcccccceEEEeecCCCCCCCe
Q psy12911        149 RTPQ---PIMTINLPE-RC--YCADVDYPLAVVGTAGRGIVLYQLEGKPQ--EFKKTESPLKYQNRCIAIFRDKKKQPAG  220 (356)
Q Consensus       149 ~~~~---~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~  220 (356)
                      .+++   ....+..+. .+  +.+++++..+++++.|+.|++||++....  ........|...+.+++|+|+    +.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~  160 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN----NVL  160 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT----SSE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC----CCE
Confidence            9877   555554444 34  44455677999999999999999998753  233333347889999999999    789


Q ss_pred             EEEeecCCeEEEEEeCCCCC----------------CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCe
Q psy12911        221 YGLGSVEGRVAIQYVNPANP----------------KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGT  284 (356)
Q Consensus       221 ~~~~~~dg~i~i~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~  284 (356)
                      +++++.|+.|++||++....                ..+..+ .|..           .|.+++|+|++++|++++.||.
T Consensus       161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~v~~~~~sp~~~~l~~~~~d~~  228 (377)
T 3dwl_C          161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-----------WVHAVGFSPSGNALAYAGHDSS  228 (377)
T ss_dssp             EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-----------SEEEEEECTTSSCEEEEETTTE
T ss_pred             EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-----------eEEEEEECCCCCEEEEEeCCCc
Confidence            99999999999999963321                122222 4444           8999999999999999999999


Q ss_pred             EEEEEcCccee----cCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        285 FSFWDKDARTK----LKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       285 i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      |++||+.+++.    +..+.+|...|.+++|+|++++|++++.+.
T Consensus       229 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  273 (377)
T 3dwl_C          229 VTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS  273 (377)
T ss_dssp             EC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred             EEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence            99999999887    888999999999999999999999886443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.9e-36  Score=253.25  Aligned_cols=249  Identities=13%  Similarity=0.151  Sum_probs=200.8

Q ss_pred             CCCCCCeeEEEecCC---CCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEE------ccCCCeEEEEcC
Q psy12911         26 SPPEDSISCMAFSPS---TLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAW------IDDGTKVFMAGC   96 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~---~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~------s~~~~~l~~~~~   96 (356)
                      .+|...|.+++|+|+   +   .+|++|+.||.|++||+.+.. .....+.+|...|.+++|      +|++++|++++.
T Consensus        62 ~~~~~~v~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~  137 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQ---RYLATGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR  137 (357)
T ss_dssp             EEESSCEEEEECTTCCTTT---CCEEEEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET
T ss_pred             ecccCcEEEEEEcCCCCCC---ceEEEecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeC
Confidence            379999999999998   6   899999999999999998843 255778899999999955      679999999999


Q ss_pred             CCeEEEEEcCCCc-eee-ecccC----CCeeEEE----EEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEE
Q psy12911         97 DKTVKCWDLASNQ-SMQ-VAQHD----APVKTCH----WIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCA  166 (356)
Q Consensus        97 dg~i~vwd~~~~~-~~~-~~~~~----~~v~~~~----~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  166 (356)
                      |+.|++||+.+++ ... +..|.    ..+.+++    |+  +++.+|++++.||.|++||+++++..........+.++
T Consensus       138 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~  215 (357)
T 3i2n_A          138 DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN--QEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSL  215 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC---CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred             CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC--CCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEE
Confidence            9999999999886 343 44443    3899998    55  89999999999999999999999887766666655555


Q ss_pred             ec-----CCCeEEEEecCCeEEEEeCCCCccccccc---cCcccccceEEEeecCCCCCCC-eEEEeecCCeEEEEEeCC
Q psy12911        167 DV-----DYPLAVVGTAGRGIVLYQLEGKPQEFKKT---ESPLKYQNRCIAIFRDKKKQPA-GYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       167 ~~-----~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~dg~i~i~~~~~  237 (356)
                      .+     .+..+++++.|+.|++||+++........   ...+...+.+++|+|+    +. ++++++.||.|++|+++.
T Consensus       216 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          216 EFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ----NRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT----EEEEEEEEETTSEEEEEEEEC
T ss_pred             EcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCC----CCcEEEEEeCCCcEEEeecCC
Confidence            54     56799999999999999998764322211   1257789999999999    56 899999999999999975


Q ss_pred             CCCC-----------------CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEE-EEcCCCeEEEEEcCccee
Q psy12911        238 ANPK-----------------DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLA-TVGSEGTFSFWDKDARTK  295 (356)
Q Consensus       238 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~-s~~~dg~i~iwd~~~~~~  295 (356)
                      ....                 .+..+.+|..           .|++++|+|++++|+ +++.||.|++||+.+.+.
T Consensus       292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          292 PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-----------PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CSCC--CCTTSCCCCCCCEEEEEEEEECCSS-----------CEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             CcccccccCCCCccccccccceeeccccCCC-----------CeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            4322                 3445666665           899999999999888 899999999999987654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-35  Score=255.14  Aligned_cols=254  Identities=17%  Similarity=0.235  Sum_probs=208.8

Q ss_pred             CceEEeCCCCCCeeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCc-----eeeeeeccCCcceeEEEEccCC-CeEE
Q psy12911         20 KDFEVVSPPEDSISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGK-----TIPKSMQGMSEPVLDVAWIDDG-TKVF   92 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~-~~l~   92 (356)
                      ..+..+.+|.+.|++++|+| ++   ++|++|+.||.|+|||+.+++.     .....+.+|...|.+++|+|++ ++|+
T Consensus        72 ~~~~~~~~h~~~V~~~~~~p~~~---~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~  148 (402)
T 2aq5_A           72 KNVPLVCGHTAPVLDIAWCPHND---NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLL  148 (402)
T ss_dssp             TTCCCBCCCSSCEEEEEECTTCT---TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEE
T ss_pred             CCCceEecCCCCEEEEEeCCCCC---CEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEE
Confidence            34556789999999999999 77   9999999999999999988432     4457788999999999999998 6999


Q ss_pred             EEcCCCeEEEEEcCCCceee-e--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE-eCCC----eeE
Q psy12911         93 MAGCDKTVKCWDLASNQSMQ-V--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI-NLPE----RCY  164 (356)
Q Consensus        93 ~~~~dg~i~vwd~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~----~~~  164 (356)
                      +++.|+.|++||+.+++.+. +  ..|...|.+++|+  +++.+|++++.||.|++||+++++.+..+ ..+.    ..+
T Consensus       149 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  226 (402)
T 2aq5_A          149 SAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS--RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHA  226 (402)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC--TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEE
T ss_pred             EEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC--CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEE
Confidence            99999999999999998876 5  6799999999999  99999999999999999999999998888 4443    345


Q ss_pred             EEecCCCeEEEE---ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEE-EeecCCeEEEEEeCCCCC
Q psy12911        165 CADVDYPLAVVG---TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYG-LGSVEGRVAIQYVNPANP  240 (356)
Q Consensus       165 ~~~~~~~~~~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~dg~i~i~~~~~~~~  240 (356)
                      .+.+++.+++++   +.++.|++||+++...........+...+.+++|+|+    +..++ +++.|+.|++|++....+
T Consensus       227 ~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          227 VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD----TNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             EECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT----TTEEEEEETTCSCEEEEEECSSTT
T ss_pred             EEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC----CCEEEEEEcCCCeEEEEEecCCCc
Confidence            566666788888   7899999999998765444444456678999999999    67775 455799999999987631


Q ss_pred             CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911        241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART  294 (356)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~  294 (356)
                       .+..+..+...         .+|.+++|+|++.++++  .++.+++|++.+++
T Consensus       303 -~~~~l~~~~~~---------~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          303 -FLHYLSMFSSK---------ESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             -CEEEEEEECCS---------SCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             -ceEeecccccC---------CcccceEEeccccccee--cceeEEEEEcCCCc
Confidence             24555555411         17999999999988875  56699999998764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-34  Score=244.54  Aligned_cols=256  Identities=12%  Similarity=0.129  Sum_probs=215.1

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      ....+....+.+|.+.|.+++|+|++   ++|++++.||.|++||+.++  .....+. +...|.+++|+|++++|++++
T Consensus        61 ~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  134 (369)
T 3zwl_B           61 SLNGERLGTLDGHTGTIWSIDVDCFT---KYCVTGSADYSIKLWDVSNG--QCVATWK-SPVPVKRVEFSPCGNYFLAIL  134 (369)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTTEEEEEETTTC--CEEEEEE-CSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCchhhhhhhhcCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECCCC--cEEEEee-cCCCeEEEEEccCCCEEEEec
Confidence            34456778889999999999999999   99999999999999999873  3334554 889999999999999999999


Q ss_pred             CC-----CeEEEEEcCCCcee------------eecccCC--CeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-CCceE
Q psy12911         96 CD-----KTVKCWDLASNQSM------------QVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-PQPIM  155 (356)
Q Consensus        96 ~d-----g~i~vwd~~~~~~~------------~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~  155 (356)
                      .+     +.|.+||+..+...            .+..|..  .+.+++|+  +++++|++++.||.|++||+++ .+.+.
T Consensus       135 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~  212 (369)
T 3zwl_B          135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS--TKGKYIIAGHKDGKISKYDVSNNYEYVD  212 (369)
T ss_dssp             CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC--GGGCEEEEEETTSEEEEEETTTTTEEEE
T ss_pred             CCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc--CCCCEEEEEcCCCEEEEEECCCCcEeEE
Confidence            98     99999999876421            2344555  89999999  9999999999999999999998 67777


Q ss_pred             EEeCCC-e--eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC----
Q psy12911        156 TINLPE-R--CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG----  228 (356)
Q Consensus       156 ~~~~~~-~--~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg----  228 (356)
                      .+..+. .  .+.+++++..+++++.|+.|++||+++........   +...+.+++++|+    +..+++++.++    
T Consensus       213 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~----~~~l~~~~~~~~~~~  285 (369)
T 3zwl_B          213 SIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPL----KEFIILGGGQEAKDV  285 (369)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSS----SSEEEEEECCC----
T ss_pred             EEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCC----CceEEEeecCCCceE
Confidence            887654 2  44566677899999999999999999875433322   5678899999999    78999999888    


Q ss_pred             ----------eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC
Q psy12911        229 ----------RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP  298 (356)
Q Consensus       229 ----------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  298 (356)
                                .+++|+....  +.+..+.+|..           .|.+++|+|++++|++++.||.|++|+++++.....
T Consensus       286 ~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  352 (369)
T 3zwl_B          286 TTTSANEGKFEARFYHKIFE--EEIGRVQGHFG-----------PLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFK  352 (369)
T ss_dssp             ---------CEEEEEETTTC--CEEEEEECCSS-----------CEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred             EEEecCCCcceeEEEecCCC--cchhheecccC-----------cEEEEEECCCCCEEEEEcCCCeEEEEECccccchhH
Confidence                      8999998766  66778888877           899999999999999999999999999998765554


Q ss_pred             C
Q psy12911        299 S  299 (356)
Q Consensus       299 ~  299 (356)
                      +
T Consensus       353 ~  353 (369)
T 3zwl_B          353 Y  353 (369)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.1e-34  Score=247.91  Aligned_cols=242  Identities=15%  Similarity=0.115  Sum_probs=190.5

Q ss_pred             CCCCCCeeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911         26 SPPEDSISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD  104 (356)
Q Consensus        26 ~~h~~~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  104 (356)
                      .+|.+.|.+++|+| ++   .+|++++.|+.|++||+.............|...|.+++|+|++++|++++.|+.|++||
T Consensus       115 ~~h~~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  191 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNT---NQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLG  191 (383)
T ss_dssp             CSTTCBEEEEEEETTEE---EEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred             CCcCCceeEEEeCCCCC---CEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEE
Confidence            37999999999999 66   899999999999999998622222222334558899999999999999999999999999


Q ss_pred             cCCCceeeecccCCCeeEEEEEeCCCCC-eEEEEECCCeEEEEeCCC----CCceEEEeCCCeeEE--Eec-CCCeEEEE
Q psy12911        105 LASNQSMQVAQHDAPVKTCHWIKAPNYT-CLMTGSWDKTLKFWDLRT----PQPIMTINLPERCYC--ADV-DYPLAVVG  176 (356)
Q Consensus       105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~--~~~-~~~~~~~~  176 (356)
                      +.......+..|...|.+++|+  |+++ +|++++.|+.|++||+++    ++.+..+.....+.+  +++ ++..++++
T Consensus       192 ~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~  269 (383)
T 3ei3_B          192 LDGHEIFKEKLHKAKVTHAEFN--PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT  269 (383)
T ss_dssp             TTSCEEEEEECSSSCEEEEEEC--SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEE
T ss_pred             CCCCEEEEeccCCCcEEEEEEC--CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEE
Confidence            9655455588899999999999  8888 899999999999999998    566777765555544  445 66799999


Q ss_pred             ecCCeEEEEeCCCCccccccccC-----ccc----------ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTES-----PLK----------YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK  241 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~-----~~~----------~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~  241 (356)
                      +.|+.|++||+++..........     .+.          ..+..++++|+    +.+  +++.|+.|++||+...  +
T Consensus       270 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d----g~~--s~s~d~~i~iwd~~~~--~  341 (383)
T 3ei3_B          270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD----DQL--LLNDKRTIDIYDANSG--G  341 (383)
T ss_dssp             ESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC----TTT--CTTCCCCEEEEETTTC--C
T ss_pred             cCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCC----ccc--ccCCCCeEEEEecCCC--c
Confidence            99999999999876543222210     111          23444666776    444  7889999999999766  5


Q ss_pred             Ccceeeee--cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        242 DNFTFKCH--RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       242 ~~~~~~~~--~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                      .+..+.++  ..           .+..++|+|++++|++++ ||.|++||+++
T Consensus       342 ~~~~l~~~~~~~-----------~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          342 LVHQLRDPNAAG-----------IISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEEECBTTBCS-----------CCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             eeeeecCCCCCc-----------eEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            56777663  33           677889999999999997 99999999874

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.7e-35  Score=248.20  Aligned_cols=253  Identities=11%  Similarity=0.156  Sum_probs=204.3

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      ....+.+|...|++++|+|++   ++|++++.||.|++||+.+........+..|...|.+++|+|++++|++++.|+.|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v  120 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDS---NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI  120 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTT---TEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSE
T ss_pred             eeeeecCCCCcccEEEEeCCC---CEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEE
Confidence            567788999999999999999   99999999999999999874333344557799999999999999999999999999


Q ss_pred             EEEEcCCCce----ee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC------------------CCCceEEE
Q psy12911        101 KCWDLASNQS----MQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR------------------TPQPIMTI  157 (356)
Q Consensus       101 ~vwd~~~~~~----~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~  157 (356)
                      ++||+..++.    .. ...|...|.+++|+  +++++|++++.||.|++||++                  .++.+..+
T Consensus       121 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
T 1k8k_C          121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWH--PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES  198 (372)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCSCEEEEEEC--TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred             EEEEecCCCcceeeeeeecccCCCeeEEEEc--CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence            9999998763    22 35689999999999  999999999999999999954                  56777777


Q ss_pred             eCCC---eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEE
Q psy12911        158 NLPE---RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQY  234 (356)
Q Consensus       158 ~~~~---~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  234 (356)
                      ..+.   ..+++++++..+++++.|+.|++||++++......  ..+...+.+++|+|+    +.+++++ .|+.+++|+
T Consensus       199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~l~~~-~d~~i~i~~  271 (372)
T 1k8k_C          199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL--ASETLPLLAVTFITE----SSLVAAG-HDCFPVLFT  271 (372)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE--ECSSCCEEEEEEEET----TEEEEEE-TTSSCEEEE
T ss_pred             CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE--ccCCCCeEEEEEecC----CCEEEEE-eCCeEEEEE
Confidence            6554   34556667789999999999999999877543222  245678999999999    6667666 999999999


Q ss_pred             eCC--CCCCCc------------------------------------cee-eeecCCCCCCCcccccceEEEEEe-CCC-
Q psy12911        235 VNP--ANPKDN------------------------------------FTF-KCHRSNGGAGGVQDIYAVNGIVFH-PVH-  273 (356)
Q Consensus       235 ~~~--~~~~~~------------------------------------~~~-~~~~~~~~~~~~~~~~~i~~i~~s-p~~-  273 (356)
                      ++.  +....+                                    ..+ .+|..           .|++++|+ ++| 
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~g~  340 (372)
T 1k8k_C          272 YDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN-----------SVSQISVLSGGKA  340 (372)
T ss_dssp             EETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS-----------CEEEEEEEESTTT
T ss_pred             ccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC-----------CcceeEEecCCCc
Confidence            976  211111                                    111 13333           89999966 666 


Q ss_pred             --CEEEEEcCCCeEEEEEcCcceec
Q psy12911        274 --GTLATVGSEGTFSFWDKDARTKL  296 (356)
Q Consensus       274 --~~l~s~~~dg~i~iwd~~~~~~~  296 (356)
                        .+|++|+.||.|++||+.+++.+
T Consensus       341 ~~~~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          341 KCSQFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             SCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred             ceeeEEEecCCCceEEEEecChhHh
Confidence              99999999999999999886544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-35  Score=260.43  Aligned_cols=259  Identities=9%  Similarity=-0.036  Sum_probs=196.9

Q ss_pred             EeCCCCCCeeEEEecCCCC---CceEEEEEeCCCeEEEEeccCCCce---------eeeeeccCCcceeEEEEccCCCeE
Q psy12911         24 VVSPPEDSISCMAFSPSTL---PQYFLIAGSWDNNVRCWEVEPNGKT---------IPKSMQGMSEPVLDVAWIDDGTKV   91 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~---~~~~l~~~~~dg~i~vw~~~~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l   91 (356)
                      .+.+|.+.|.+++|+|++.   ++.+||+++.||+|+|||+..+...         ....+.+|...|++++|++++ .|
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l  280 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV  280 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence            4567889999999999710   1279999999999999999764211         123677899999999999864 89


Q ss_pred             EEEcCCCeEEEEEcCCCce-e-eecccCCCeeEEE--EEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEEeCCC-----
Q psy12911         92 FMAGCDKTVKCWDLASNQS-M-QVAQHDAPVKTCH--WIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTINLPE-----  161 (356)
Q Consensus        92 ~~~~~dg~i~vwd~~~~~~-~-~~~~~~~~v~~~~--~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----  161 (356)
                      ++|+.||+|++||+++++. . .+.+|...|.+++  |+  +++ .+|++|+.|++|+|||+++++++..+..+.     
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s--~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v  358 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYS--DFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNL  358 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECC--TTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSC
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcC--CCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcc
Confidence            9999999999999997643 3 3678999999994  55  777 899999999999999999887766665432     


Q ss_pred             eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911        162 RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK  241 (356)
Q Consensus       162 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~  241 (356)
                      ..+++++++..+++++.|++|++||++.......  ...|...|.+++|+|+    +..+++|+.|+.|++|+.......
T Consensus       359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~--l~gH~~~V~sva~Sp~----g~~l~Sgs~Dgtv~lwd~~~~~~~  432 (524)
T 2j04_B          359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP--LVSRETTITAIGVSRL----HPMVLAGSADGSLIITNAARRLLH  432 (524)
T ss_dssp             CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE--EEECSSCEEEEECCSS----CCBCEEEETTTEEECCBSCSSTTT
T ss_pred             cceEeCCCcCeEEEeCCCCcEEEEECccccccee--eecCCCceEEEEeCCC----CCeEEEEECCCEEEEEechHhhcc
Confidence            3467778788999999999999999998653322  2257889999999999    789999999999999987432111


Q ss_pred             C------------cceeeeecC-------------------CCCCCCcccccceEEEEEeCCC---CEEEEEcCCCeEEE
Q psy12911        242 D------------NFTFKCHRS-------------------NGGAGGVQDIYAVNGIVFHPVH---GTLATVGSEGTFSF  287 (356)
Q Consensus       242 ~------------~~~~~~~~~-------------------~~~~~~~~~~~~i~~i~~sp~~---~~l~s~~~dg~i~i  287 (356)
                      .            +..+.....                   .....-..+...|.+++|+|++   .++|+|+.||.|+|
T Consensus       433 ~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl  512 (524)
T 2j04_B          433 GIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL  512 (524)
T ss_dssp             CC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred             ccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence            1            001100000                   0001112244589999999996   49999999999999


Q ss_pred             EEcC
Q psy12911        288 WDKD  291 (356)
Q Consensus       288 wd~~  291 (356)
                      |++.
T Consensus       513 w~l~  516 (524)
T 2j04_B          513 EYLS  516 (524)
T ss_dssp             EECS
T ss_pred             EEcc
Confidence            9986

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.9e-36  Score=258.08  Aligned_cols=272  Identities=14%  Similarity=0.095  Sum_probs=176.7

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc---eeeeeeccCCcceeEEEEcc--------CCCeEEEEc
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK---TIPKSMQGMSEPVLDVAWID--------DGTKVFMAG   95 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~s~--------~~~~l~~~~   95 (356)
                      .|...+....+++++   .+|++|+.|++|+|||+..+..   .....+.+|.+.|++++|+|        |+++||+++
T Consensus        87 ~~~~~~~~~~~~~~~---~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s  163 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYS---LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG  163 (393)
T ss_dssp             ----------CCEEE---EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred             ccCCCcceeecCCCC---CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence            344444445555565   7899999999999999987432   23345789999999999998        789999999


Q ss_pred             CCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeE
Q psy12911         96 CDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLA  173 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (356)
                      .|++|+|||+.++.... ...|...|.+++|+  |++ .+|++++.|++|++||+++++...........     .....
T Consensus       164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~-----~~~~~  236 (393)
T 4gq1_A          164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFR--PSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV-----KNPWL  236 (393)
T ss_dssp             TTSEEEEEEEETTEEEEEEEECSSCEEEEEEE--TTEEEEEEEEETTSEEEEEETTCCC----------C-----SCCCS
T ss_pred             CCCeEEEEECCCCceeeeecCCCCCcEEEEEC--CCCCceEEecCCCCEEEEEECCCCcccccccccCCc-----ccceE
Confidence            99999999998776554 78899999999999  776 58999999999999999998766554432210     00001


Q ss_pred             EEEecCCeEEEEeCCCCccccccccCcccccceEEEee-cCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCC
Q psy12911        174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIF-RDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSN  252 (356)
Q Consensus       174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  252 (356)
                      ........           ........+...+.++.|+ ++    +..+++++.|+.+++||+...  .....+..|...
T Consensus       237 ~s~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~d----g~~l~s~s~d~~i~vwd~~~~--~~~~~l~~~~~~  299 (393)
T 4gq1_A          237 LTLNTLPL-----------VNTCHSSGIASSLANVRWIGSD----GSGILAMCKSGAWLRWNLFAN--NDYNEISDSTMK  299 (393)
T ss_dssp             EEEESGGG-----------C------CCSSSCSEEEEETTT----TCEEEEECTTSEEEEEEC-----------------
T ss_pred             Eecccccc-----------eeeeecccccccceeeeeecCC----CCEEEEEeCCCCEEEEECccC--CCCceEeeecCc
Confidence            11111000           0011112456678889987 56    789999999999999998655  223333333221


Q ss_pred             CCC-------CCcccccceEEEEEeC--CCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        253 GGA-------GGVQDIYAVNGIVFHP--VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       253 ~~~-------~~~~~~~~i~~i~~sp--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      ...       .............|+|  ++.++++|+.||+|++||+.+++.+..+..|..+|++++|||||++||+++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          300 LGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             ----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred             cccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            000       0000001222334444  3457788999999999999999888888889999999999999999999985


Q ss_pred             cC
Q psy12911        324 YD  325 (356)
Q Consensus       324 ~d  325 (356)
                      ++
T Consensus       380 ~G  381 (393)
T 4gq1_A          380 GS  381 (393)
T ss_dssp             SE
T ss_pred             CC
Confidence            44

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=5.1e-35  Score=253.55  Aligned_cols=243  Identities=17%  Similarity=0.267  Sum_probs=202.1

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC--------CceeeeeeccCCcceeEEEEccCCC-eEEE
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN--------GKTIPKSMQGMSEPVLDVAWIDDGT-KVFM   93 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~   93 (356)
                      ....+|.+.|++++|+|++  +.+||+++.||.|++|++...        .......+.+|...|.+++|+|++. +|++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~--~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQN--ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             EEEEEESSCCSEEEEETTE--EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred             EEEEcCCCcEEEEEECCCC--CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence            4456799999999999973  289999999999999999751        1345567889999999999999988 9999


Q ss_pred             EcCCCeEEEEEcCCCce--------eeecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCC---ceEEEeCCC
Q psy12911         94 AGCDKTVKCWDLASNQS--------MQVAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQ---PIMTINLPE  161 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~--------~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~  161 (356)
                      |+.||.|++|++..+..        ..+..|...|.+++|+  | ++.+|++++.||.|++||++++.   .+..+.   
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~---  274 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH--LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD---  274 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEEC--SSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE---
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEe--CCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee---
Confidence            99999999999987432        2256899999999999  6 77899999999999999998763   333222   


Q ss_pred             eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911        162 RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK  241 (356)
Q Consensus       162 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~  241 (356)
                                                            .+...+.+++|+|++   ...+++|+.||.|++||++... .
T Consensus       275 --------------------------------------~~~~~v~~i~~~p~~---~~~l~tg~~dg~v~vwd~~~~~-~  312 (430)
T 2xyi_A          275 --------------------------------------AHTAEVNCLSFNPYS---EFILATGSADKTVALWDLRNLK-L  312 (430)
T ss_dssp             --------------------------------------CCSSCEEEEEECSSC---TTEEEEEETTSEEEEEETTCTT-S
T ss_pred             --------------------------------------cCCCCeEEEEeCCCC---CCEEEEEeCCCeEEEEeCCCCC-C
Confidence                                                  345678999999983   3478899999999999998643 5


Q ss_pred             CcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCc--------------ceecCCCCCCccce
Q psy12911        242 DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDA--------------RTKLKPSEAMDMSI  306 (356)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v  306 (356)
                      .+..+..|..           .|.+++|+|++ .+|++++.||.|+|||+..              .+.+..+.+|...|
T Consensus       313 ~~~~~~~h~~-----------~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  381 (430)
T 2xyi_A          313 KLHSFESHKD-----------EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI  381 (430)
T ss_dssp             CSEEEECCSS-----------CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE
T ss_pred             CeEEeecCCC-----------CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc
Confidence            6778888877           89999999998 5799999999999999987              35667778899999


Q ss_pred             EEEEECCCCC-EEEEEeccC
Q psy12911        307 STCALNHNGQ-IFAYAVSYD  325 (356)
Q Consensus       307 ~~~~~s~~~~-~l~~~s~~d  325 (356)
                      ++++|+|+++ +|++++.|+
T Consensus       382 ~~~~~~p~~~~~l~s~s~dg  401 (430)
T 2xyi_A          382 SDFSWNPNEPWIICSVSEDN  401 (430)
T ss_dssp             EEEEECSSSTTEEEEEETTS
T ss_pred             eEEEECCCCCCEEEEEECCC
Confidence            9999999999 777777554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1e-34  Score=271.57  Aligned_cols=280  Identities=16%  Similarity=0.179  Sum_probs=229.2

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      ...+....+.+|.+.|++++|+|++   ++|++|+.||.|+|||+.++  .....+.+|...|.+++|+|++++|++++.
T Consensus        43 ~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  117 (814)
T 3mkq_A           43 ETQVEVRSIQVTETPVRAGKFIARK---NWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSD  117 (814)
T ss_dssp             TTTEEEEEEECCSSCEEEEEEEGGG---TEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCceEEEEecCCCcEEEEEEeCCC---CEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCEEEEEEeCCCCEEEEEcC
Confidence            4455677788999999999999999   99999999999999999873  445678889999999999999999999999


Q ss_pred             CCeEEEEEcCCC-ceee-ecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----eeEEEec-
Q psy12911         97 DKTVKCWDLASN-QSMQ-VAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----RCYCADV-  168 (356)
Q Consensus        97 dg~i~vwd~~~~-~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~-  168 (356)
                      ||.|++||+.++ .... +.+|...|.+++|+  | ++..|++++.||.|++||+.+++....+..+.    ..+++.+ 
T Consensus       118 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  195 (814)
T 3mkq_A          118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFN--PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL  195 (814)
T ss_dssp             TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEE--TTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS
T ss_pred             CCEEEEEECCCCceEEEEEcCCCCcEEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC
Confidence            999999999987 4433 67899999999999  8 88999999999999999999988877776543    3455555 


Q ss_pred             -CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911        169 -DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK  247 (356)
Q Consensus       169 -~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  247 (356)
                       ++..+++++.++.|++||++++......  ..+...+.+++|+|+    +..+++++.||.|++|++...  ..+..+.
T Consensus       196 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~l~~~~~dg~v~vwd~~~~--~~~~~~~  267 (814)
T 3mkq_A          196 PDKPYMITASDDLTIKIWDYQTKSCVATL--EGHMSNVSFAVFHPT----LPIIISGSEDGTLKIWNSSTY--KVEKTLN  267 (814)
T ss_dssp             TTCCEEEEECTTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECSS----SSEEEEEETTSCEEEEETTTC--SEEEEEC
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCcEEEEE--cCCCCCEEEEEEcCC----CCEEEEEeCCCeEEEEECCCC--cEEEEee
Confidence             6779999999999999999887543222  246788999999999    789999999999999999765  5566777


Q ss_pred             eecCCCCCCCcccccceEEEEEeCCCC--EEEEEcCCCeEEEEEcCccee----------cC------------------
Q psy12911        248 CHRSNGGAGGVQDIYAVNGIVFHPVHG--TLATVGSEGTFSFWDKDARTK----------LK------------------  297 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~i~~sp~~~--~l~s~~~dg~i~iwd~~~~~~----------~~------------------  297 (356)
                      .+..           .+.+++|+|++.  +++++ .|+.+.+|++..+..          +.                  
T Consensus       268 ~~~~-----------~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  335 (814)
T 3mkq_A          268 VGLE-----------RSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRG  335 (814)
T ss_dssp             CSSS-----------SEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCS
T ss_pred             cCCC-----------cEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccc
Confidence            7665           899999999986  45555 466788888754221          11                  


Q ss_pred             ---------------CCCCCccceEEEEECCCCCEEEEEec
Q psy12911        298 ---------------PSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       298 ---------------~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                                     .+..+...+.+++|+|+|++|++++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~  376 (814)
T 3mkq_A          336 NEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGD  376 (814)
T ss_dssp             CCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEET
T ss_pred             ccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecC
Confidence                           01223446789999999999999873

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.3e-35  Score=251.10  Aligned_cols=267  Identities=9%  Similarity=0.063  Sum_probs=207.3

Q ss_pred             CCceEEeCCCCCCeeEEEecCC----CCCceEEEEEeCCCeEEEEeccCCCc---eeeeeeccC-----CcceeEEEEc-
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPS----TLPQYFLIAGSWDNNVRCWEVEPNGK---TIPKSMQGM-----SEPVLDVAWI-   85 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~----~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~-----~~~v~~~~~s-   85 (356)
                      ......+.+|...|++++|+|+    +....+|++++.||.|++|++.+...   .....+..|     ...|.+++|+ 
T Consensus        52 ~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  131 (397)
T 1sq9_A           52 KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA  131 (397)
T ss_dssp             GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred             CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence            3467778899999999999998    21115899999999999999987332   114667778     5999999999 


Q ss_pred             ---cCCCe-EEEEcCCCeEEEEEcCC------Ccee------ee-------cccCCCeeEEEEEeCCCCCeEEEEECCCe
Q psy12911         86 ---DDGTK-VFMAGCDKTVKCWDLAS------NQSM------QV-------AQHDAPVKTCHWIKAPNYTCLMTGSWDKT  142 (356)
Q Consensus        86 ---~~~~~-l~~~~~dg~i~vwd~~~------~~~~------~~-------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~  142 (356)
                         |++++ |++++.||.|++||+.+      ++.+      .+       ..|...|.+++|+  +++ +|++++.||.
T Consensus       132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-~l~~~~~dg~  208 (397)
T 1sq9_A          132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS--ERG-LIATGFNNGT  208 (397)
T ss_dssp             CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC--TTS-EEEEECTTSE
T ss_pred             ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC--CCc-eEEEEeCCCc
Confidence               99999 99999999999999988      5443      33       3478999999999  899 9999999999


Q ss_pred             EEEEeCCCCCceEEEeC---C----Cee--EEEecCCCeEEEEecC---CeEEEEeCCCCccccccccC-----------
Q psy12911        143 LKFWDLRTPQPIMTINL---P----ERC--YCADVDYPLAVVGTAG---RGIVLYQLEGKPQEFKKTES-----------  199 (356)
Q Consensus       143 i~iwd~~~~~~~~~~~~---~----~~~--~~~~~~~~~~~~~~~d---~~i~i~d~~~~~~~~~~~~~-----------  199 (356)
                      |++||+++++.+..+..   +    ..+  +++++++..+++++.|   +.|++||+++..........           
T Consensus       209 i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  288 (397)
T 1sq9_A          209 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF  288 (397)
T ss_dssp             EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCB
T ss_pred             EEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccc
Confidence            99999999999999887   4    344  4555677899999999   99999999887543322211           


Q ss_pred             cccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee------eecCCCCCC----CcccccceEEEEE
Q psy12911        200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK------CHRSNGGAG----GVQDIYAVNGIVF  269 (356)
Q Consensus       200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~------~~~~~~~~~----~~~~~~~i~~i~~  269 (356)
                      .+...+.+++|+|+    +.++++++.||.|++||+...  +.+..+.      .|.......    ...+...|++++|
T Consensus       289 ~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~  362 (397)
T 1sq9_A          289 AHSSWVMSLSFNDS----GETLCSAGWDGKLRFWDVKTK--ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF  362 (397)
T ss_dssp             SBSSCEEEEEECSS----SSEEEEEETTSEEEEEETTTT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE
T ss_pred             ccCCcEEEEEECCC----CCEEEEEeCCCeEEEEEcCCC--ceeEEEecccCcccchhhhhccccccccccCCceeEEEe
Confidence            06788999999999    789999999999999999766  5566676      550000000    0000228999999


Q ss_pred             eCCC----------CEEEEEcCCCeEEEEEcCcce
Q psy12911        270 HPVH----------GTLATVGSEGTFSFWDKDART  294 (356)
Q Consensus       270 sp~~----------~~l~s~~~dg~i~iwd~~~~~  294 (356)
                      +|++          ++|++++.||.|++||+.+|+
T Consensus       363 ~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          363 LKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            9998          799999999999999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-34  Score=248.80  Aligned_cols=277  Identities=9%  Similarity=-0.045  Sum_probs=211.4

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCce-eeeeec-----------------------------------
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKT-IPKSMQ-----------------------------------   73 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~-----------------------------------   73 (356)
                      .++.+++|+|+|   ++|+++ .++.|++||+.++... .+..+.                                   
T Consensus         5 ~p~~~v~~s~dg---~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (450)
T 2vdu_B            5 HPLQNLLTSRDG---SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK   80 (450)
T ss_dssp             CCCCEEEECSSS---SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred             ccEEEEEecCCC---CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence            478999999999   866665 5789999999874400 112222                                   


Q ss_pred             -------------------cCCcceeEEEEccCCCeE-EEEcCCCeEEEEEcC--CCceeee-c--ccCCCeeEEEEEeC
Q psy12911         74 -------------------GMSEPVLDVAWIDDGTKV-FMAGCDKTVKCWDLA--SNQSMQV-A--QHDAPVKTCHWIKA  128 (356)
Q Consensus        74 -------------------~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~-~--~~~~~v~~~~~~~~  128 (356)
                                         +|...|.+++|+|++++| ++++.||.|++||+.  +++.+.. .  .|...|.+++|+  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s--  158 (450)
T 2vdu_B           81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA--  158 (450)
T ss_dssp             -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC--
T ss_pred             CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc--
Confidence                               344479999999999996 889999999999999  7777663 2  677899999999  


Q ss_pred             CCCCeEEEEECCCeEEEEeCCCCCceE----EEeCCC---eeEEEecC---CCeEEEEecCCeEEEEeCCCCcccccccc
Q psy12911        129 PNYTCLMTGSWDKTLKFWDLRTPQPIM----TINLPE---RCYCADVD---YPLAVVGTAGRGIVLYQLEGKPQEFKKTE  198 (356)
Q Consensus       129 ~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~---~~~~~~~~---~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  198 (356)
                      |++.+|++++.+|.|++|++.+++...    .+..+.   ..+.++++   +.++++++.|+.|++||++++..... ..
T Consensus       159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~  237 (450)
T 2vdu_B          159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK-WL  237 (450)
T ss_dssp             TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE-EC
T ss_pred             CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee-ee
Confidence            999999999999999999998876543    444443   34566777   67999999999999999987654322 23


Q ss_pred             CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC--------------CCCCcccccce
Q psy12911        199 SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG--------------GAGGVQDIYAV  264 (356)
Q Consensus       199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~i  264 (356)
                      ..|...+.+++|+ +    +.++++++.|+.|++||+...  +.+..+..+....              ..........|
T Consensus       238 ~~h~~~v~~~~~s-d----~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (450)
T 2vdu_B          238 FGHKHFVSSICCG-K----DYLLLSAGGDDKIFAWDWKTG--KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV  310 (450)
T ss_dssp             CCCSSCEEEEEEC-S----TTEEEEEESSSEEEEEETTTC--CEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred             cCCCCceEEEEEC-C----CCEEEEEeCCCeEEEEECCCC--cEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence            3577899999999 7    889999999999999999876  4455554332000              00000112379


Q ss_pred             EEEEEeCCCCEEEEEc-CCCeEEEEEc--Ccc---eecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911        265 NGIVFHPVHGTLATVG-SEGTFSFWDK--DAR---TKLKPSEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       265 ~~i~~sp~~~~l~s~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                      .+++|+|++++|++++ .|+.|++|++  .++   +.+..+..| +.|.+++|+|++ ++++.+
T Consensus       311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~  372 (450)
T 2vdu_B          311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLD  372 (450)
T ss_dssp             EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEEC
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEe
Confidence            9999999999999998 8999999999  555   667777777 889999999964 444443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.3e-35  Score=247.63  Aligned_cols=244  Identities=11%  Similarity=0.067  Sum_probs=189.8

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEE-----------eCCCeEEEEeccCCCceee--e-----eeccCCcceeEEEEc
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAG-----------SWDNNVRCWEVEPNGKTIP--K-----SMQGMSEPVLDVAWI   85 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~-----------~~dg~i~vw~~~~~~~~~~--~-----~~~~~~~~v~~~~~s   85 (356)
                      .+.+|.+.|.+++++.+     .+++|           +.|+.+++|++........  .     ....+...+.+++|+
T Consensus        68 ~l~~~~~~v~s~~~~~~-----~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS  142 (365)
T 4h5i_A           68 ALEDNDDSPTAIDASKG-----IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS  142 (365)
T ss_dssp             ECCTTSCCCCEEEEETT-----EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC
T ss_pred             EccCCCCceEEEEeCCC-----EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc
Confidence            46789999999887653     45554           4578899999876432221  1     112345568999999


Q ss_pred             cCCCeEEEE--cCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe--CCC
Q psy12911         86 DDGTKVFMA--GCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN--LPE  161 (356)
Q Consensus        86 ~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~  161 (356)
                      |||++++++  +.|++|+|||+++++.+....|...|.+++|+  |+++++++++.+ .+++|+..+++.+....  .+.
T Consensus       143 pDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fs--pdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~  219 (365)
T 4h5i_A          143 REGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFS--TDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKN  219 (365)
T ss_dssp             TTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEEC--TTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTT
T ss_pred             CCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEc--cCCceEEeccce-eEEEEEeccCcceeeeecCCCC
Confidence            999998654  46899999999999988877799999999999  999999998855 57777777777655433  233


Q ss_pred             ---eeEEEecCCCeEEEEecCC----eEEEEeCCCCccccc--cccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911        162 ---RCYCADVDYPLAVVGTAGR----GIVLYQLEGKPQEFK--KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI  232 (356)
Q Consensus       162 ---~~~~~~~~~~~~~~~~~d~----~i~i~d~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i  232 (356)
                         ..+.+++++..+++++.++    .+.+|++........  .....+...|++++|+|+    +.+|++|+.|+.|+|
T Consensus       220 ~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd----g~~lasgs~D~~V~i  295 (365)
T 4h5i_A          220 WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK----GELAVLASNDNSIAL  295 (365)
T ss_dssp             EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT----SCEEEEEETTSCEEE
T ss_pred             CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCC----CCceEEEcCCCEEEE
Confidence               3456777888999988877    688899876543221  222346678999999999    889999999999999


Q ss_pred             EEeCCCCCCCccee-eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        233 QYVNPANPKDNFTF-KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       233 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                      ||+...  +++..+ .+|..           +|++++|||||++||+|+.|++|+|||+..
T Consensus       296 wd~~~~--~~~~~~~~gH~~-----------~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          296 VKLKDL--SMSKIFKQAHSF-----------AITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EETTTT--EEEEEETTSSSS-----------CEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EECCCC--cEEEEecCcccC-----------CEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999765  556654 67887           899999999999999999999999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-35  Score=251.84  Aligned_cols=257  Identities=10%  Similarity=0.044  Sum_probs=204.5

Q ss_pred             CCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEc
Q psy12911         26 SPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL  105 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  105 (356)
                      +.-...|.+++|+|||   +++|+++.|++|+  |....     ..+.+|...|.+++|+|+|       .++.+.+|+.
T Consensus        12 ~~~~~~v~sv~~SpDG---~~iASas~D~TV~--d~~~~-----~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~   74 (588)
T 2j04_A           12 KEFEDWKNNLTWARDG---TLYLTTFPDISIG--QPKYA-----KDINCNSKNLFHVKEFPLE-------FENKLDFELA   74 (588)
T ss_dssp             CCCSSSSCCEEECTTS---CEEEECSSSEEEE--EECCC-----SCCSSBGGGTEEEEEECCC-------CCCTTTTSCC
T ss_pred             hHhhccEEEEEECCCC---CEEEEEcCCceee--ccccc-----ceecCCCccEEEEEECCCC-------CcceEEEEeC
Confidence            4456899999999999   9999999999999  64441     3447899999999999999       4666666665


Q ss_pred             CCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--------eeEEEecCCCeEEEEe
Q psy12911        106 ASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--------RCYCADVDYPLAVVGT  177 (356)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~  177 (356)
                      +..... ...|...|.+++|+  |+|.+|++++.||.|++||...  ++..+. +.        ..++++++++.|++|+
T Consensus        75 ~~~~~~-~~~~~~~V~~vawS--PdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs  148 (588)
T 2j04_A           75 QQNGLL-NSQPVCYPRVCKPS--PIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN  148 (588)
T ss_dssp             CSSCSS-TTSCSCCEEEEEEC--SSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred             CCceEe-ecCCCCcEEEEEEC--CCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence            433332 33568899999999  9999999999999999999544  555555 33        3577788899999999


Q ss_pred             cCCeEEEEeCCCCcc------ccccc---cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC-Ccceee
Q psy12911        178 AGRGIVLYQLEGKPQ------EFKKT---ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK-DNFTFK  247 (356)
Q Consensus       178 ~d~~i~i~d~~~~~~------~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~  247 (356)
                      .||+|++||+.++..      .....   ...|...|.+++|+|+    +  +++++.|+.+++|++...... ...++.
T Consensus       149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd----g--Laass~D~tVrlWd~~~~~~~~~~~tL~  222 (588)
T 2j04_A          149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED----V--LVAALSNNSVFSMTVSASSHQPVSRMIQ  222 (588)
T ss_dssp             TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT----E--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred             CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC----c--EEEEeCCCeEEEEECCCCccccceeeec
Confidence            999999999998742      11222   2446789999999999    6  889999999999999776422 234453


Q ss_pred             -eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEE--CCCCCEEEEEecc
Q psy12911        248 -CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCAL--NHNGQIFAYAVSY  324 (356)
Q Consensus       248 -~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~s~~  324 (356)
                       +|..           .|.+++|+  |+.||+++ +++|++||+.+++......+|.+.|.+++|  +||+..|++++.+
T Consensus       223 ~~h~~-----------~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed  288 (588)
T 2j04_A          223 NASRR-----------KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT  288 (588)
T ss_dssp             CCCSS-----------CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC
T ss_pred             ccccC-----------cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC
Confidence             6665           79999999  68999997 699999999988774433379999999999  9999999999855


Q ss_pred             C
Q psy12911        325 D  325 (356)
Q Consensus       325 d  325 (356)
                      +
T Consensus       289 G  289 (588)
T 2j04_A          289 S  289 (588)
T ss_dssp             E
T ss_pred             C
Confidence            4

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.3e-35  Score=253.41  Aligned_cols=252  Identities=17%  Similarity=0.126  Sum_probs=182.3

Q ss_pred             eEEeCCCCCCeeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         22 FEVVSPPEDSISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      ...+.+|.+.|++|+|+| ++   .+|++|+.||+|+|||++............+...+.+++|+|++++|++|+.||.|
T Consensus       157 ~~~~~gH~~~V~~l~f~p~~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i  233 (435)
T 4e54_B          157 FIKGIGAGGSITGLKFNPLNT---NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNV  233 (435)
T ss_dssp             EECCCSSSCCCCEEEECSSCT---TEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBE
T ss_pred             EEEccCCCCCEEEEEEeCCCC---CEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcE
Confidence            344568999999999998 55   89999999999999999873222222233345578899999999999999999999


Q ss_pred             EEEEcCCCceeeecccCCCeeEEEEEeCCCCC-eEEEEECCCeEEEEeCCCCCceEEE---eCC-Cee--EEEecCCCeE
Q psy12911        101 KCWDLASNQSMQVAQHDAPVKTCHWIKAPNYT-CLMTGSWDKTLKFWDLRTPQPIMTI---NLP-ERC--YCADVDYPLA  173 (356)
Q Consensus       101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~---~~~-~~~--~~~~~~~~~~  173 (356)
                      ++||++......+.+|...|.+++|+  |++. +|++++.|+.|++||+++.+....+   ..| ..+  +++++++.+|
T Consensus       234 ~~wd~~~~~~~~~~~h~~~v~~v~~~--p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l  311 (435)
T 4e54_B          234 ILLNMDGKELWNLRMHKKKVTHVALN--PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARL  311 (435)
T ss_dssp             EEEESSSCBCCCSBCCSSCEEEEEEC--TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEE
T ss_pred             eeeccCcceeEEEecccceEEeeeec--CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCee
Confidence            99999877666688999999999999  7765 6889999999999999987654433   222 234  4455667899


Q ss_pred             EEEecCCeEEEEeCCCCccccccccCcc----cccceEEEeecCCCCCCCeEEEe------------ecCCeEEEEEeCC
Q psy12911        174 VVGTAGRGIVLYQLEGKPQEFKKTESPL----KYQNRCIAIFRDKKKQPAGYGLG------------SVEGRVAIQYVNP  237 (356)
Q Consensus       174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~------------~~dg~i~i~~~~~  237 (356)
                      ++++.|+.|++||+++............    ...+....++|+    +..++++            ..++.|++||...
T Consensus       312 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~  387 (435)
T 4e54_B          312 LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPR----YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS  387 (435)
T ss_dssp             EEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSS----SSCEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred             EEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCC----CCEEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence            9999999999999988654333222111    111223344444    3333333            2446799999876


Q ss_pred             CCCCCcceee-eecCCCCCCCcccccceEEE-EEeCCCCEEEEEcCCCeEEEEEcCcceec
Q psy12911        238 ANPKDNFTFK-CHRSNGGAGGVQDIYAVNGI-VFHPVHGTLATVGSEGTFSFWDKDARTKL  296 (356)
Q Consensus       238 ~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i-~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  296 (356)
                      +  +.+..+. +|..           .|.++ +|+|+|++|++|+ |+.|+|||+++++..
T Consensus       388 g--~~~~~l~~~~~~-----------~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          388 G--KMMCQLYDPESS-----------GISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             C--CEEEEECCSSCC-----------CCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             C--cEEEEEeCCCCC-----------cEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            5  4455543 3443           67776 6999999999886 789999999988653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-36  Score=259.31  Aligned_cols=269  Identities=12%  Similarity=0.095  Sum_probs=206.6

Q ss_pred             EecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee-ccCCcceeEEEEcc-CCCeEEEEcCCCeEEEEEcCC---Cce
Q psy12911         36 AFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM-QGMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDLAS---NQS  110 (356)
Q Consensus        36 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~---~~~  110 (356)
                      .|+|++   ..+++++      .|+...   .++..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+   +..
T Consensus        34 ~f~~~~---~~~~~~~------~w~~~g---~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~  101 (437)
T 3gre_A           34 EFGPIQ---EIVRSPN------MGNLRG---KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV  101 (437)
T ss_dssp             GGCCCC---CCCCCCC------GGGCCC---CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC
T ss_pred             hcCCcc---ccccccc------cccccc---eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc
Confidence            366776   6666655      387543   444566 88999999999999 999999999999999999977   432


Q ss_pred             ---eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC---CCCceEEEeC-------------CCeeEEEe----
Q psy12911        111 ---MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR---TPQPIMTINL-------------PERCYCAD----  167 (356)
Q Consensus       111 ---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~-------------~~~~~~~~----  167 (356)
                         .....|...|.+++|+  +++.+|++++.||.|++||+.   +++.+..+..             ...+.++.    
T Consensus       102 ~~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  179 (437)
T 3gre_A          102 YSSSLTYDCSSTVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN  179 (437)
T ss_dssp             CSCSEEEECSSCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred             cceeeeccCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc
Confidence               2234699999999999  999999999999999999995   5555544432             22233332    


Q ss_pred             cCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911        168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK  247 (356)
Q Consensus       168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  247 (356)
                      .++..+++++.|+.|++||+++...........+...+.+++|+|+    +..+++++.||.|++||++..  +.+..+.
T Consensus       180 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~~~--~~~~~~~  253 (437)
T 3gre_A          180 EEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE----CCVLILGTTRGIIDIWDIRFN--VLIRSWS  253 (437)
T ss_dssp             SSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT----SCEEEEEETTSCEEEEETTTT--EEEEEEB
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC----CCEEEEEcCCCeEEEEEcCCc--cEEEEEe
Confidence            3467999999999999999998765444433337789999999999    889999999999999999865  4455554


Q ss_pred             -eecCCCCCCCcccccceEEEEEeC----CCCEEEEEcCCCeEEEEEcCcceecCCCCC---------------------
Q psy12911        248 -CHRSNGGAGGVQDIYAVNGIVFHP----VHGTLATVGSEGTFSFWDKDARTKLKPSEA---------------------  301 (356)
Q Consensus       248 -~~~~~~~~~~~~~~~~i~~i~~sp----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------------  301 (356)
                       .|..           +|.+++|+|    ++.+|++++.||.|++||+.+++++..+.+                     
T Consensus       254 ~~~~~-----------~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  322 (437)
T 3gre_A          254 FGDHA-----------PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELN  322 (437)
T ss_dssp             CTTCE-----------EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCC
T ss_pred             cCCCC-----------ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccce
Confidence             4444           799996654    678999999999999999998876544332                     


Q ss_pred             -----CccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCc
Q psy12911        302 -----MDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGN  339 (356)
Q Consensus       302 -----~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~  339 (356)
                           |...|++++|+ ++++|++|+.|+   ...+|+...+.
T Consensus       323 ~~~~~~~~~v~~l~~~-~~~~l~s~~~d~---~i~~wd~~~~~  361 (437)
T 3gre_A          323 FCGIRSLNALSTISVS-NDKILLTDEATS---SIVMFSLNELS  361 (437)
T ss_dssp             CCCCCSGGGGCCEEEE-TTEEEEEEGGGT---EEEEEETTCGG
T ss_pred             ecccccCCceEEEEEC-CceEEEecCCCC---eEEEEECCCcc
Confidence                 66779999999 889999998665   34445444443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=249.40  Aligned_cols=245  Identities=11%  Similarity=0.075  Sum_probs=200.6

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCc-----ceeEEEEccCCCeEEEEcCCCeEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE-----PVLDVAWIDDGTKVFMAGCDKTVK  101 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~  101 (356)
                      +|...|.+++|||+|   .+||+++.||.|+|||.+.    +...+. |..     .|.+++|||||++||+|+.||+|+
T Consensus        83 ~~~~~V~~vawSPdG---~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           83 QPVCYPRVCKPSPID---DWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             SCSCCEEEEEECSSS---SCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             CCCCcEEEEEECCCC---CEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            568899999999999   9999999999999999543    445556 665     599999999999999999999999


Q ss_pred             EEEcCCCce-------ee-e----cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc---eEEEe-CC-CeeE
Q psy12911        102 CWDLASNQS-------MQ-V----AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP---IMTIN-LP-ERCY  164 (356)
Q Consensus       102 vwd~~~~~~-------~~-~----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~-~~-~~~~  164 (356)
                      +||+.++..       +. +    .+|...|.+++|+  |+|  +++++.|++|++||+..++.   .+++. .+ ..+.
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS--Pdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~  230 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY--EDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT  230 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE--TTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEc--CCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence            999998853       22 3    5688899999999  998  88899999999999988773   35664 44 3455


Q ss_pred             EEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEe--ecCCCCCCCeEEEeecCCeEEEEEeCCCCCCC
Q psy12911        165 CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAI--FRDKKKQPAGYGLGSVEGRVAIQYVNPANPKD  242 (356)
Q Consensus       165 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~  242 (356)
                      .+.+.+..+++++ +++|++||+.++.......  .|...+..+++  +|+    +..++++..+|. ++|..+      
T Consensus       231 svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d----~~~La~a~edG~-klw~~d------  296 (588)
T 2j04_A          231 DLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKE----STILLMSNKTSY-KVLLED------  296 (588)
T ss_dssp             CEEEETTEEEEEC-SSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSS----CEEEEECSSCEE-EEEESS------
T ss_pred             EEEEECCEEEEEe-CCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCC----CCEEEEEcCCCC-EEEeec------
Confidence            5555467788776 6999999999876532222  48889999999  988    789999999999 999876      


Q ss_pred             cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911        243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                                             .++++|++..+++.  |+++++|+...+ .+..+++ ...|.+++|||||+.+|+++
T Consensus       297 -----------------------~~~~spd~~l~a~~--d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          297 -----------------------ELHVTADNIIAPYL--EKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             -----------------------SEEEECCCSSHHHH--HHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred             -----------------------cEEECCCceEEEEc--CCEEEEEECCCC-ceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence                                   14489999888775  999999998644 4556665 77899999999999999998


Q ss_pred             cc
Q psy12911        323 SY  324 (356)
Q Consensus       323 ~~  324 (356)
                      .-
T Consensus       350 ~i  351 (588)
T 2j04_A          350 DM  351 (588)
T ss_dssp             EE
T ss_pred             ec
Confidence            64

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-34  Score=239.25  Aligned_cols=255  Identities=7%  Similarity=-0.022  Sum_probs=195.2

Q ss_pred             ecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC---------C
Q psy12911         37 FSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA---------S  107 (356)
Q Consensus        37 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~---------~  107 (356)
                      +.+++   .+|++|+.||.|++||+.++.  ....+.  ...|.++.|+|+   +++++.|++|++|+..         +
T Consensus        44 ~~~d~---~~l~sg~~Dg~v~iwd~~~~~--~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~  113 (343)
T 3lrv_A           44 MYYDK---WVCMCRCEDGALHFTQLKDSK--TITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKT  113 (343)
T ss_dssp             SSEEE---EEEEEEEETTEEEEEEESSSS--CEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred             hcCCC---CEEEEECCCCcEEEEECCCCc--EEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCC
Confidence            44566   899999999999999998733  223443  567888899987   9999999999999765         4


Q ss_pred             Cceee--ecccCCCeeEEEEEeCC--CCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----eeEEEecCCCeEEEEecC
Q psy12911        108 NQSMQ--VAQHDAPVKTCHWIKAP--NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----RCYCADVDYPLAVVGTAG  179 (356)
Q Consensus       108 ~~~~~--~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d  179 (356)
                      ++.+.  ...|...|.+++|+  |  +++++++++.||.|++||+++++.+.....+.    ..+++++++.++++|+.|
T Consensus       114 ~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d  191 (343)
T 3lrv_A          114 NKVLREIEVDSANEIIYMYGH--NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD  191 (343)
T ss_dssp             CCEEEEEECCCSSCEEEEECC--C---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred             cceeEEeecCCCCCEEEEEcC--CCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence            44333  34677899999999  8  99999999999999999999998877664332    356677778899999999


Q ss_pred             CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee---ecCCCCCC
Q psy12911        180 RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC---HRSNGGAG  256 (356)
Q Consensus       180 ~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~---~~~~~~~~  256 (356)
                      +.|++||++++..........|...|.+++|+|+    +..+++++ ++.|++||++..  +....+..   |..     
T Consensus       192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~----g~~l~s~~-~~~v~iwd~~~~--~~~~~~~~~~~~~~-----  259 (343)
T 3lrv_A          192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN----GYWMVVEC-DQTVVCFDLRKD--VGTLAYPTYTIPEF-----  259 (343)
T ss_dssp             SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTT----SSEEEEEE-SSBEEEEETTSS--TTCBSSCCCBC--------
T ss_pred             CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCC----CCEEEEEe-CCeEEEEEcCCC--Ccceeecccccccc-----
Confidence            9999999998865423344347889999999999    78999999 559999999876  33333332   222     


Q ss_pred             Ccccccce--EEEEEeCCCCEEEEEcC-CCeEEEEEcCcceecCCCCCCccceEEEEECC---CCCEEEEEeccC
Q psy12911        257 GVQDIYAV--NGIVFHPVHGTLATVGS-EGTFSFWDKDARTKLKPSEAMDMSISTCALNH---NGQIFAYAVSYD  325 (356)
Q Consensus       257 ~~~~~~~i--~~i~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~s~~d  325 (356)
                            .+  .+++|+|+|++|++++. |+.|++|++.+.......    .++..++|++   +++.|++++.++
T Consensus       260 ------~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~  324 (343)
T 3lrv_A          260 ------KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDG  324 (343)
T ss_dssp             --------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETT
T ss_pred             ------cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCC
Confidence                  33  36999999999999988 999999999765432222    5677888888   888888888765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.7e-33  Score=244.58  Aligned_cols=261  Identities=20%  Similarity=0.286  Sum_probs=202.3

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      ...+....+.+|.+.|.+++|  ++   ++|++|+.||.|++||+.++  .....+.+|...|.+++|++  ..|++|+.
T Consensus       161 ~~~~~~~~~~~h~~~v~~l~~--~~---~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~--~~l~s~s~  231 (435)
T 1p22_A          161 NTLECKRILTGHTGSVLCLQY--DE---RVIITGSSDSTVRVWDVNTG--EMLNTLIHHCEAVLHLRFNN--GMMVTCSK  231 (435)
T ss_dssp             SSCCEEEEECCCSSCEEEEEC--CS---SEEEEEETTSCEEEEESSSC--CEEEEECCCCSCEEEEECCT--TEEEEEET
T ss_pred             CCCeEEEEEcCCCCcEEEEEE--CC---CEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCcEEEEEEcC--CEEEEeeC
Confidence            345567788899999999999  56   89999999999999999883  44578889999999999974  59999999


Q ss_pred             CCeEEEEEcCCCcee----eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCCC
Q psy12911         97 DKTVKCWDLASNQSM----QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYP  171 (356)
Q Consensus        97 dg~i~vwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~  171 (356)
                      ||.|++||+.+++..    .+.+|...|.+++|.    ++++++|+.||.|++||+++++.+..+..+. .+.++.+++.
T Consensus       232 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  307 (435)
T 1p22_A          232 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD----DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR  307 (435)
T ss_dssp             TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred             CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC----CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCC
Confidence            999999999987754    267899999999984    6799999999999999999999999998765 5677788889


Q ss_pred             eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC-------CCcc
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-------KDNF  244 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-------~~~~  244 (356)
                      .+++++.|+.|++||++++.....  ...+...+.++++  +    +..+++|+.||.|++||+.....       ..+.
T Consensus       308 ~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~--~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~  379 (435)
T 1p22_A          308 LVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCIRF--D----NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR  379 (435)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEC--C----SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEE--EeCCcCcEEEEEe--c----CCEEEEEeCCCcEEEEECCCCCCccccccchhee
Confidence            999999999999999998754322  2346778999998  4    56899999999999999854321       1456


Q ss_pred             eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEEC
Q psy12911        245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALN  312 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  312 (356)
                      .+.+|..           .|.+++|  ++.+|++++.||.|++||+.+........ ...+...+.|.
T Consensus       380 ~~~~h~~-----------~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~  433 (435)
T 1p22_A          380 TLVEHSG-----------RVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI  433 (435)
T ss_dssp             EECCCSS-----------CCCCEEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred             eccCCCC-----------CeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence            6677776           8999999  78899999999999999998776544432 23344555554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=228.35  Aligned_cols=247  Identities=16%  Similarity=0.197  Sum_probs=196.9

Q ss_pred             CCceEE--eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         19 NKDFEV--VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        19 ~~~~~~--~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      .+..++  +.+|...|++++|+|++   ++|++|+.||+|++|++++  ......+.+|...+.++.+  ++..+++++.
T Consensus        55 g~~~~~~~~~~~~~~V~~v~~~~~~---~~l~sgs~Dg~v~iw~~~~--~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~  127 (318)
T 4ggc_A           55 GDILQLLQMEQPGEYISSVAWIKEG---NYLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSW--NSYILSSGSR  127 (318)
T ss_dssp             CCEEEEEECCSTTCCEEEEEECTTS---SEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEE--ETTEEEEEET
T ss_pred             CCEEEEEEecCCCCeEEEEEECCCC---CEEEEEECCCcEEEeecCC--ceeEEEecCccceEEEeec--CCCEEEEEec
Confidence            344444  35788899999999999   9999999999999999988  3555788899998877655  5679999999


Q ss_pred             CCeEEEEEcCCCcee--eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce----EEEeCC-CeeE--EEe
Q psy12911         97 DKTVKCWDLASNQSM--QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI----MTINLP-ERCY--CAD  167 (356)
Q Consensus        97 dg~i~vwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~-~~~~--~~~  167 (356)
                      ++.+++|+.......  .+.+|...+..+.+.  +++++|++++.|+.|++||+++++..    .....+ ..+.  ...
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~  205 (318)
T 4ggc_A          128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA--PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC  205 (318)
T ss_dssp             TSEEEEEETTSSSCEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEEC
T ss_pred             CCceEeeecCCCceeEEEEcCccCceEEEEEc--CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEec
Confidence            999999999876543  377899999999999  99999999999999999999987532    222222 2233  333


Q ss_pred             cCCC-e--EEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee--cCCeEEEEEeCCCCCCC
Q psy12911        168 VDYP-L--AVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS--VEGRVAIQYVNPANPKD  242 (356)
Q Consensus       168 ~~~~-~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~  242 (356)
                      +... .  +++++.++.|++||.+.......   ..+...+..+.+++.    +..+++++  .|+.|++||++..  +.
T Consensus       206 ~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~---~~~~~~v~~~~~~~~----~~~~~~~sg~~d~~i~iwd~~~~--~~  276 (318)
T 4ggc_A          206 PWQSNVLATGGGTSDRHIRIWNVCSGACLSA---VDAHSQVCSILWSPH----YKELISGHGFAQNQLVIWKYPTM--AK  276 (318)
T ss_dssp             TTSTTEEEEEECTTTCEEEEEETTTCCEEEE---EECSSCEEEEEEETT----TTEEEEEECTTTCCEEEEETTTC--CE
T ss_pred             CCCCcEEEEEecCCCCEEEEEeccccccccc---ccceeeeeeeeeccc----ccceEEEEEcCCCEEEEEECCCC--cE
Confidence            3333 3  34567789999999987654322   235567899999998    56666544  7999999999876  67


Q ss_pred             cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911        243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART  294 (356)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~  294 (356)
                      +.++.+|..           .|++++|+|+|++||+|+.||+|+|||+.+..
T Consensus       277 ~~~l~gH~~-----------~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          277 VAELKGHTS-----------RVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEECCCSS-----------CEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEEEcCCCC-----------CEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            888999988           89999999999999999999999999987643

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-33  Score=229.89  Aligned_cols=242  Identities=14%  Similarity=0.113  Sum_probs=200.5

Q ss_pred             ceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEE
Q psy12911         66 KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLK  144 (356)
Q Consensus        66 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~  144 (356)
                      ..+...+.+|...|++++| +++++|++++.||.|++||+.+++... +..|...|.+++|+  |++++|++++.||.|+
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYD--SEKELLLFGGKDTMIN   84 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEE--TTTTEEEEEETTSCEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEEC--CCCCEEEEecCCCeEE
Confidence            4566889999999999999 999999999999999999999887766 77899999999999  9999999999999999


Q ss_pred             EEeCCCC---CceEEEeCCC-eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeec-CCCCCCC
Q psy12911        145 FWDLRTP---QPIMTINLPE-RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFR-DKKKQPA  219 (356)
Q Consensus       145 iwd~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~  219 (356)
                      +|++...   +.+..+..+. .+.++.++++.+++++.|+.|++||...    .......+...+.++.++| +    +.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~v~~~~~~~~~----~~  156 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGS----LVYNLQAHNASVWDAKVVSFS----EN  156 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTE----EEEEEECCSSCEEEEEEEETT----TT
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCc----EEEecccCCCceeEEEEccCC----CC
Confidence            9998765   4566666554 5677788889999999999999999221    1222234678899999998 5    78


Q ss_pred             eEEEeecCCeEEEEEeCCCCCCCcceeee-ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC
Q psy12911        220 GYGLGSVEGRVAIQYVNPANPKDNFTFKC-HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP  298 (356)
Q Consensus       220 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  298 (356)
                      .+++++.|+.+++||..    .....+.. |..           .+.+++|+|++. +++++.||.|++||+.+++.+..
T Consensus       157 ~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~-----------~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~  220 (313)
T 3odt_A          157 KFLTASADKTIKLWQND----KVIKTFSGIHND-----------VVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT  220 (313)
T ss_dssp             EEEEEETTSCEEEEETT----EEEEEECSSCSS-----------CEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEEEECCCCEEEEecC----ceEEEEeccCcc-----------cEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh
Confidence            99999999999999932    34445554 554           899999999998 99999999999999999999999


Q ss_pred             CCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCC
Q psy12911        299 SEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKG  338 (356)
Q Consensus       299 ~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~  338 (356)
                      +.+|.+.|++++|+|++ .|++++.|+   ...+|+...+
T Consensus       221 ~~~~~~~i~~~~~~~~~-~l~~~~~dg---~v~iwd~~~~  256 (313)
T 3odt_A          221 YEGHESFVYCIKLLPNG-DIVSCGEDR---TVRIWSKENG  256 (313)
T ss_dssp             EECCSSCEEEEEECTTS-CEEEEETTS---EEEEECTTTC
T ss_pred             hhcCCceEEEEEEecCC-CEEEEecCC---EEEEEECCCC
Confidence            99999999999999999 577777554   3444554443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=235.91  Aligned_cols=252  Identities=15%  Similarity=0.219  Sum_probs=192.4

Q ss_pred             CCCCCCeeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC---CCeEEEEcCCCeEE
Q psy12911         26 SPPEDSISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD---GTKVFMAGCDKTVK  101 (356)
Q Consensus        26 ~~h~~~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~  101 (356)
                      .+|...|.+++|+| ++   .+|++++.||.|++||+.+.  .....+. +...+.+++|++.   +.++++++.|+.|+
T Consensus        96 ~~~~~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDT---GMFTSSSFDKTLKVWDTNTL--QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQ  169 (408)
T ss_dssp             TCCSSCEEEEEECTTCT---TCEEEEETTSEEEEEETTTT--EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred             ccCCCcEEEEEEccCCC---cEEEEEeCCCeEEEeeCCCC--ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence            46999999999999 55   89999999999999999873  3334443 7889999999984   45999999999999


Q ss_pred             EEEcCCCceee-ecccCCCeeEEEEEeCCCCC-eEEEEECCCeEEEEeCCCCC-ceEEEe---------------CCC--
Q psy12911        102 CWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYT-CLMTGSWDKTLKFWDLRTPQ-PIMTIN---------------LPE--  161 (356)
Q Consensus       102 vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~---------------~~~--  161 (356)
                      +||+.+++.+. +..|...|.+++|+  |++. +|++++.||.|++||++++. .+..+.               .+.  
T Consensus       170 ~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (408)
T 4a11_B          170 LCDLKSGSCSHILQGHRQEILAVSWS--PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK  247 (408)
T ss_dssp             EEESSSSCCCEEECCCCSCEEEEEEC--SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSC
T ss_pred             EEeCCCcceeeeecCCCCcEEEEEEC--CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCc
Confidence            99999888776 67799999999999  8888 58999999999999998875 444442               222  


Q ss_pred             -eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccc---cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        162 -RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKY---QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       162 -~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                       ..+++++++..+++++.|+.|++||++++.............   ..........    ...+++++.++.|++||+..
T Consensus       248 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~v~d~~~  323 (408)
T 4a11_B          248 VNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC----SSEFVFVPYGSTIAVYTVYS  323 (408)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS----SSCEEEEEETTEEEEEETTT
T ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCC----CceEEEEecCCEEEEEECcC
Confidence             245566677899999999999999999875433322211111   1111222222    45788889999999999977


Q ss_pred             CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC
Q psy12911        238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM  302 (356)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  302 (356)
                      .  +.+..+.+|..           .|++++|+|++++|++++.||.|++||+.+++.+.....+
T Consensus       324 ~--~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  375 (408)
T 4a11_B          324 G--EQITMLKGHYK-----------TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET  375 (408)
T ss_dssp             C--CEEEEECCCSS-----------CEEEEEEETTTTEEEEEETTSCEEEEEECC----------
T ss_pred             C--cceeeeccCCC-----------eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce
Confidence            6  66788888887           8999999999999999999999999999998877655433

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.7e-33  Score=234.76  Aligned_cols=244  Identities=11%  Similarity=0.095  Sum_probs=196.0

Q ss_pred             eeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc----eeeecccCCCeeEEEEEeCCCCC-eEEEEECCCeEEE
Q psy12911         71 SMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ----SMQVAQHDAPVKTCHWIKAPNYT-CLMTGSWDKTLKF  145 (356)
Q Consensus        71 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~i  145 (356)
                      ...+|.+.|.+++|+|++++|++++.|+.|++|++.+++    ......|...|.+++|+  ++++ +|++++.||.|++
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI--DNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEE--ESSSEEEEEEETTSCEEE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEEC--CCCCcEEEEEcCCCeEEE
Confidence            345799999999999999999999999999999999887    55577899999999999  8899 9999999999999


Q ss_pred             EeC-CCCCceEEEeC--CC-e--eEEEecCCCeEEEEecCCeEEEEeCCC---------CccccccccCcccccceEEEe
Q psy12911        146 WDL-RTPQPIMTINL--PE-R--CYCADVDYPLAVVGTAGRGIVLYQLEG---------KPQEFKKTESPLKYQNRCIAI  210 (356)
Q Consensus       146 wd~-~~~~~~~~~~~--~~-~--~~~~~~~~~~~~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~i~~~~~  210 (356)
                      ||+ .+++. ..+..  +. .  .+.+.+ +..+++++.|+.|++||+++         .... ...  .+...+.++++
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~--~~~~~v~~~~~  158 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-NNT--KVKNKIFTMDT  158 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-SSS--SSCCCEEEEEE
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCee-eEE--eeCCceEEEEe
Confidence            999 77654 55554  43 3  344555 78999999999999999986         3221 122  26788999999


Q ss_pred             ecCCCCCCCeEEEeecCCeEEEEEeCC-CCCCCcceeeeecCCCCCCCcccccceEEEEEeC-CCCEEEEEcCCCeEEEE
Q psy12911        211 FRDKKKQPAGYGLGSVEGRVAIQYVNP-ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP-VHGTLATVGSEGTFSFW  288 (356)
Q Consensus       211 ~~~~~~~~~~~~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~s~~~dg~i~iw  288 (356)
                      +|+    .  +++++.++.|++||++. ...........|..           .+.+++|+| ++++|++++.||.|++|
T Consensus       159 ~~~----~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-----------~i~~i~~~~~~~~~l~~~~~dg~i~i~  221 (342)
T 1yfq_A          159 NSS----R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY-----------QIRDVALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             CSS----E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSS-----------CEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred             cCC----c--EEEEeCCCeEEEEECCccccccceeeecCCCC-----------ceeEEEECCCCCCEEEEEecCCcEEEE
Confidence            988    3  99999999999999987 43222223334444           799999999 99999999999999999


Q ss_pred             EcCcc------eecCCCCCCcc---------ceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCcee
Q psy12911        289 DKDAR------TKLKPSEAMDM---------SISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAI  341 (356)
Q Consensus       289 d~~~~------~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~  341 (356)
                      ++...      +.+..+..|..         .|.+++|+|++++|++++.|+   ...+|+...+..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~  286 (342)
T 1yfq_A          222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG---IISCWNLQTRKKI  286 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS---CEEEEETTTTEEE
T ss_pred             EEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc---eEEEEcCccHhHh
Confidence            99876      66666667654         999999999999999998654   3445555544433

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=245.22  Aligned_cols=260  Identities=13%  Similarity=0.179  Sum_probs=193.4

Q ss_pred             cCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc------------eeeecccC------------CCeeEEEEEeCC
Q psy12911         74 GMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ------------SMQVAQHD------------APVKTCHWIKAP  129 (356)
Q Consensus        74 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~~------------~~v~~~~~~~~~  129 (356)
                      .+.+.|++++|+|+|++|++|+.||.|++||+.+++            ...+.+|.            ..|.+++|+  |
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~--~  103 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL--P  103 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC--C
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc--C
Confidence            367899999999999999999999999999999876            23367888            889999999  7


Q ss_pred             CC--CeEEEEECCCeEEEEeCCCCCce---------------------------------------EEE-eCCC---eeE
Q psy12911        130 NY--TCLMTGSWDKTLKFWDLRTPQPI---------------------------------------MTI-NLPE---RCY  164 (356)
Q Consensus       130 ~~--~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~~-~~~~---~~~  164 (356)
                      ++  .+|++++.|+.|++||+.+++..                                       ..+ ..+.   ..+
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            76  78999999999999998764321                                       122 2222   345


Q ss_pred             EEecCCCeEEEEecCCeEEEEeCCCCcccccc------ccCcccccceEEEeecCCCCCC-CeEEEeecCCeEEEEEeCC
Q psy12911        165 CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKK------TESPLKYQNRCIAIFRDKKKQP-AGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       165 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~dg~i~i~~~~~  237 (356)
                      ++++++..++++ .|+.|++||++........      ....+...+.+++|+|+    + ..+++++.||.|++||++.
T Consensus       184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~~~dg~i~iwd~~~  258 (447)
T 3dw8_B          184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPN----SCNTFVYSSSKGTIRLCDMRA  258 (447)
T ss_dssp             EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSS----CTTEEEEEETTSCEEEEETTT
T ss_pred             EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCC----CCcEEEEEeCCCeEEEEECcC
Confidence            666777888888 8999999999954332221      23357788999999999    5 8999999999999999987


Q ss_pred             CCCC--CcceeeeecCCCCCC-CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc-ceecCCCCCCccc--------
Q psy12911        238 ANPK--DNFTFKCHRSNGGAG-GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA-RTKLKPSEAMDMS--------  305 (356)
Q Consensus       238 ~~~~--~~~~~~~~~~~~~~~-~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~--------  305 (356)
                      ....  ....+..|....... ...+...|.+++|+|+|++|++++. +.|++||+.+ ++++..+.+|...        
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~  337 (447)
T 3dw8_B          259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY  337 (447)
T ss_dssp             CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred             CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccc
Confidence            6321  145566654210000 0011126999999999999999999 9999999997 8888888888642        


Q ss_pred             -------eEEEEECCCCCEEEEEeccCCcCCCccCCCCCCceeeec
Q psy12911        306 -------ISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLR  344 (356)
Q Consensus       306 -------v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~~~~  344 (356)
                             +..++|+|++++|++++.|+   ...+|+...+..+.+.
T Consensus       338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~  380 (447)
T 3dw8_B          338 ENDCIFDKFECCWNGSDSVVMTGSYNN---FFRMFDRNTKRDITLE  380 (447)
T ss_dssp             HTSGGGCCCCEEECTTSSEEEEECSTT---EEEEEETTTCCEEEEE
T ss_pred             cccccccceEEEECCCCCEEEEeccCC---EEEEEEcCCCcceeee
Confidence                   23499999999999998654   3455666655555443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.2e-32  Score=232.45  Aligned_cols=240  Identities=10%  Similarity=0.118  Sum_probs=180.3

Q ss_pred             EEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeE-EE
Q psy12911         58 CWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCL-MT  136 (356)
Q Consensus        58 vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~  136 (356)
                      ||++.+  ...+.....|...|++++|+|||++|++|+.++ +++|++.+++......+ ..+..+++.  ++++.+ ++
T Consensus         3 i~s~~~--~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~   76 (355)
T 3vu4_A            3 LGSMIT--RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM-RHLSKVRML--HRTNYVAFV   76 (355)
T ss_dssp             ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC-SCCCEEEEC--TTSSEEEEE
T ss_pred             cccccc--cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec-CCeEEEEEc--CCCCEEEEE
Confidence            345544  334456678999999999999999999988765 78999988766543333 357888888  666666 56


Q ss_pred             EECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCC
Q psy12911        137 GSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKK  216 (356)
Q Consensus       137 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  216 (356)
                      ++.|++|++||+.+++.+..+..+..+.++.+..+.++++ .++.|++||+.+..........    ....+++++.   
T Consensus        77 ~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~~---  148 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSNG---  148 (355)
T ss_dssp             CSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEETT---
T ss_pred             ECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEcc---
Confidence            7788999999999999999999888888888888876665 4789999999987322222221    3344555553   


Q ss_pred             CCCeEEE--eecCCeEEEEEeCCCCC-------------CC-cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        217 QPAGYGL--GSVEGRVAIQYVNPANP-------------KD-NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       217 ~~~~~~~--~~~dg~i~i~~~~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                         .+++  |+.+|.|++||++....             .+ +..+.+|..           .|++++|+|+|++||+|+
T Consensus       149 ---~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-----------~v~~~~~s~~g~~l~s~s  214 (355)
T 3vu4_A          149 ---LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-----------PIKMVRLNRKSDMVATCS  214 (355)
T ss_dssp             ---EEEEEESSCTTCEEEEECCC------------------CCEEECCCSS-----------CEEEEEECTTSSEEEEEE
T ss_pred             ---EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-----------ceEEEEECCCCCEEEEEe
Confidence               4555  68999999999976420             11 667788887           899999999999999999


Q ss_pred             CCCe-EEEEEcCcceecCCCC-C-CccceEEEEECCCCCEEEEEeccC
Q psy12911        281 SEGT-FSFWDKDARTKLKPSE-A-MDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       281 ~dg~-i~iwd~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      .||+ |++||+.+++++..+. + |...|++++|+|+|++|++++.|.
T Consensus       215 ~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~  262 (355)
T 3vu4_A          215 QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW  262 (355)
T ss_dssp             TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred             CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC
Confidence            9998 9999999999999987 5 999999999999999999999765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.7e-32  Score=235.46  Aligned_cols=275  Identities=11%  Similarity=-0.015  Sum_probs=218.1

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeee---eeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPK---SMQGMSEPVLDVAWIDDGTKVFMAGCD   97 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d   97 (356)
                      ....+..+ ..+.+++|+|++   .++++++.++.|++||+.++......   .+.+|...|.+++|+++++++++++.|
T Consensus       115 ~~~~~~~~-~~~~~~~~s~~~---~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  190 (433)
T 3bws_A          115 FISRFKTG-FQPKSVRFIDNT---RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA  190 (433)
T ss_dssp             EEEEEECS-SCBCCCEESSSS---EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred             EEEEEcCC-CCceEEEEeCCC---eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence            33444444 456699999976   88888888999999999874322111   455789999999999999999999999


Q ss_pred             CeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCCCceEEEeCCCeeEE--EecCCCeE
Q psy12911         98 KTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTPQPIMTINLPERCYC--ADVDYPLA  173 (356)
Q Consensus        98 g~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~  173 (356)
                      +.|++||+.+++.+. +..|...+.+++|+  ++++.+++++ .|+.|++||+++++.+..+..+..+..  +++++..+
T Consensus       191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l  268 (433)
T 3bws_A          191 NAVHVFDLKTLAYKATVDLTGKWSKILLYD--PIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKEL  268 (433)
T ss_dssp             TEEEEEETTTCCEEEEEECSSSSEEEEEEE--TTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEE
T ss_pred             CEEEEEECCCceEEEEEcCCCCCeeEEEEc--CCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEE
Confidence            999999999988776 56788999999999  9988885554 799999999999988888887765544  45566788


Q ss_pred             EEEe--------cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCC-eEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911        174 VVGT--------AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPA-GYGLGSVEGRVAIQYVNPANPKDNF  244 (356)
Q Consensus       174 ~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~dg~i~i~~~~~~~~~~~~  244 (356)
                      ++++        .|+.|++||++++......   .+...+.+++|+|+    +. .+++++.++.+++|+++..  +...
T Consensus       269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~----g~~l~~~~~~~~~v~v~d~~~~--~~~~  339 (433)
T 3bws_A          269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTI---GPPGNKRHIVSGNT----ENKIYVSDMCCSKIEVYDLKEK--KVQK  339 (433)
T ss_dssp             EEEEEESCTTCSCCEEEEEEETTTTEEEEEE---EEEECEEEEEECSS----TTEEEEEETTTTEEEEEETTTT--EEEE
T ss_pred             EEEECCCCccccCCCeEEEEECCCCcEEeec---cCCCCcceEEECCC----CCEEEEEecCCCEEEEEECCCC--cEEE
Confidence            8877        4889999999877532221   33457889999999    54 5567789999999999754  3444


Q ss_pred             eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC---------------CCeEEEEEcCcceecCCCCCCccceEEE
Q psy12911        245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS---------------EGTFSFWDKDARTKLKPSEAMDMSISTC  309 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~  309 (356)
                      .+. +..           .+.+++|+|+|++|++++.               ||.|++||+.+++.+..+.. ...+.++
T Consensus       340 ~~~-~~~-----------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~  406 (433)
T 3bws_A          340 SIP-VFD-----------KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGL  406 (433)
T ss_dssp             EEE-CSS-----------SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEE
T ss_pred             Eec-CCC-----------CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceE
Confidence            443 333           6899999999998888876               57999999999998887765 4578999


Q ss_pred             EECCCCCEEEEEec
Q psy12911        310 ALNHNGQIFAYAVS  323 (356)
Q Consensus       310 ~~s~~~~~l~~~s~  323 (356)
                      +|+|+|++|++++.
T Consensus       407 ~~s~dg~~l~~~~~  420 (433)
T 3bws_A          407 DVSPDNRYLVISDF  420 (433)
T ss_dssp             EECTTSCEEEEEET
T ss_pred             EEcCCCCEEEEEEC
Confidence            99999999998875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.2e-30  Score=223.54  Aligned_cols=265  Identities=15%  Similarity=0.077  Sum_probs=205.8

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeE-EEEcCCCeEEEEEcCCCceeeecccCCCeeEE
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV-FMAGCDKTVKCWDLASNQSMQVAQHDAPVKTC  123 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~  123 (356)
                      .++++++.|+.|++||+.+  ......+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+....+...+.++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~--~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~   79 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTS--NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV   79 (391)
T ss_dssp             EEEEEETTTTEEEEEETTT--TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred             EEEEEcCCCCEEEEEECCC--CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccce
Confidence            6788899999999999987  34445666554 58999999999977 67778999999999999988765556699999


Q ss_pred             EEEeCCCCCeEEEEE-CCCeEEEEeCCCCCceEEEeCCCeeEE--EecCCCeE-EEEecCCeEEEEeCCCCccccccccC
Q psy12911        124 HWIKAPNYTCLMTGS-WDKTLKFWDLRTPQPIMTINLPERCYC--ADVDYPLA-VVGTAGRGIVLYQLEGKPQEFKKTES  199 (356)
Q Consensus       124 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~  199 (356)
                      +|+  |++++|+.++ .++.|++||+.+++.+..+..+..+..  +++++..+ ++++.++.|++||++++......   
T Consensus        80 ~~s--pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~---  154 (391)
T 1l0q_A           80 AVS--PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV---  154 (391)
T ss_dssp             EEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---
T ss_pred             EEC--CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE---
Confidence            999  9999776554 679999999999999888887766544  45556666 67778999999999887543222   


Q ss_pred             cccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEE
Q psy12911        200 PLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLAT  278 (356)
Q Consensus       200 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s  278 (356)
                      .....+.+++|+|+    +..+ ++++.++.|++||++..  +....+.. ..           .+.+++|+|++++|++
T Consensus       155 ~~~~~~~~~~~~~d----g~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~-~~-----------~~~~~~~~~~g~~l~~  216 (391)
T 1l0q_A          155 SVGRSPKGIAVTPD----GTKVYVANFDSMSISVIDTVTN--SVIDTVKV-EA-----------APSGIAVNPEGTKAYV  216 (391)
T ss_dssp             ECCSSEEEEEECTT----SSEEEEEETTTTEEEEEETTTT--EEEEEEEC-SS-----------EEEEEEECTTSSEEEE
T ss_pred             ecCCCcceEEECCC----CCEEEEEeCCCCEEEEEECCCC--eEEEEEec-CC-----------CccceEECCCCCEEEE
Confidence            22355689999999    6666 67788999999999765  33444433 22           6899999999999998


Q ss_pred             Ec---CCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCC
Q psy12911        279 VG---SEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKG  338 (356)
Q Consensus       279 ~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~  338 (356)
                      ++   .++.|++||+.+++.+..+..|. .+.+++|+|+|++|+.+++.|  ....+|+...+
T Consensus       217 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d--~~v~v~d~~~~  276 (391)
T 1l0q_A          217 TNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFX--NTVSVIDTATN  276 (391)
T ss_dssp             EEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTT--TEEEEEETTTT
T ss_pred             EecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCC--CEEEEEECCCC
Confidence            87   68999999999998888887655 478999999999986665433  33444555433

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.8e-30  Score=221.30  Aligned_cols=258  Identities=16%  Similarity=0.081  Sum_probs=203.4

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEE-EEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE-Ec
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFL-IAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM-AG   95 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~   95 (356)
                      ..+....+..|. .+.+++|+|++   ++| ++++.|+.|++||+.+  ......+..+. .+.+++|+|++++|++ ++
T Consensus        21 ~~~~~~~~~~~~-~~~~~~~s~dg---~~l~~~~~~d~~i~v~d~~~--~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~   93 (391)
T 1l0q_A           21 SNKVTATIPVGS-NPMGAVISPDG---TKVYVANAHSNDVSIIDTAT--NNVIATVPAGS-SPQGVAVSPDGKQVYVTNM   93 (391)
T ss_dssp             TTEEEEEEECSS-SEEEEEECTTS---SEEEEEEGGGTEEEEEETTT--TEEEEEEECSS-SEEEEEECTTSSEEEEEET
T ss_pred             CCeEEEEeecCC-CcceEEECCCC---CEEEEECCCCCeEEEEECCC--CeEEEEEECCC-CccceEECCCCCEEEEEEC
Confidence            345556666665 58999999999   765 6777899999999987  33445555444 8999999999998754 55


Q ss_pred             CCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeE-EEEECCCeEEEEeCCCCCceEEEeCCCee--EEEecCCCe
Q psy12911         96 CDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCL-MTGSWDKTLKFWDLRTPQPIMTINLPERC--YCADVDYPL  172 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~  172 (356)
                      .++.|++||+.+++.+....+...+.+++|+  ++++.+ ++++.++.|++||+.+++.+..+..+...  +++++++..
T Consensus        94 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~  171 (391)
T 1l0q_A           94 ASSTLSVIDTTSNTVAGTVKTGKSPLGLALS--PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTK  171 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSSEEEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSE
T ss_pred             CCCEEEEEECCCCeEEEEEeCCCCcceEEEC--CCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCE
Confidence            6799999999999988766667789999999  999877 67888999999999999988888876654  445556666


Q ss_pred             E-EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee---cCCeEEEEEeCCCCCCCcceeee
Q psy12911        173 A-VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS---VEGRVAIQYVNPANPKDNFTFKC  248 (356)
Q Consensus       173 ~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~dg~i~i~~~~~~~~~~~~~~~~  248 (356)
                      + ++++.++.|++||++++......   .+...+.+++++|+    +..+++++   .++.|++||+...  +.+..+..
T Consensus       172 l~~~~~~~~~v~~~d~~~~~~~~~~---~~~~~~~~~~~~~~----g~~l~~~~~~~~~~~v~~~d~~~~--~~~~~~~~  242 (391)
T 1l0q_A          172 VYVANFDSMSISVIDTVTNSVIDTV---KVEAAPSGIAVNPE----GTKAYVTNVDKYFNTVSMIDTGTN--KITARIPV  242 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEE---ECSSEEEEEEECTT----SSEEEEEEECSSCCEEEEEETTTT--EEEEEEEC
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEE---ecCCCccceEECCC----CCEEEEEecCcCCCcEEEEECCCC--eEEEEEec
Confidence            6 56678899999999887533222   23457889999999    77888887   6899999999765  44556655


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEE-EEEcCCCeEEEEEcCcceecCCCCCCccc
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTL-ATVGSEGTFSFWDKDARTKLKPSEAMDMS  305 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  305 (356)
                      +.            .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..|..+
T Consensus       243 ~~------------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~  288 (391)
T 1l0q_A          243 GP------------DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP  288 (391)
T ss_dssp             CS------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             CC------------CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence            54            57899999999877 67789999999999999888877666544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-30  Score=227.62  Aligned_cols=243  Identities=12%  Similarity=0.054  Sum_probs=189.1

Q ss_pred             eCCCCCCeeEEEecCCCCCceEE-EEEeCCCeEEEEecc--CCCceeeeeec--cCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFL-IAGSWDNNVRCWEVE--PNGKTIPKSMQ--GMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~--~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      ..+|.+.|++++|+|++   ++| ++|+.||.|+|||+.  ++  .....+.  .|...|.+++|+|++++|++++.+|.
T Consensus        98 ~~~~~~~v~~~~~s~d~---~~l~~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~  172 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDE---SRLIACADSDKSLLVFDVDKTSK--NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGD  172 (450)
T ss_dssp             --CCCCCEEEEEECTTS---SEEEEEEGGGTEEEEEEECSSSS--SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCccCCceEEEEEcCCC---CEEEEEECCCCeEEEEECcCCCC--ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCc
Confidence            34688899999999999   875 899999999999998  52  2334443  57789999999999999999999999


Q ss_pred             EEEEEcCCCcee-----eecccCCCeeEEEEEeCCC---CCeEEEEECCCeEEEEeCCCCCceEEEe-CCC-e--eEEEe
Q psy12911        100 VKCWDLASNQSM-----QVAQHDAPVKTCHWIKAPN---YTCLMTGSWDKTLKFWDLRTPQPIMTIN-LPE-R--CYCAD  167 (356)
Q Consensus       100 i~vwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~--~~~~~  167 (356)
                      |++|++.+++..     .+.+|...|.+++|+  |+   +++|++++.|+.|++||+++++.+..+. .+. .  .++++
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--p~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s  250 (450)
T 2vdu_B          173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLI--KDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG  250 (450)
T ss_dssp             EEEEETTSCCCSSCCCCCSEECSSCEEEEEEE--ECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC
T ss_pred             EEEEecCCcccccccceeeecccCceEEEEEc--CCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC
Confidence            999999887654     367799999999999  77   8899999999999999999999888743 443 3  44555


Q ss_pred             cCCCeEEEEecCCeEEEEeCCCCcccccccc-----------------------CcccccceEEEeecCCCCCCCeEEEe
Q psy12911        168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE-----------------------SPLKYQNRCIAIFRDKKKQPAGYGLG  224 (356)
Q Consensus       168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----------------------~~~~~~i~~~~~~~~~~~~~~~~~~~  224 (356)
                       ++.++++++.|+.|++||++++........                       ......+..++++|+    +.+++++
T Consensus       251 -d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~l~~~  325 (450)
T 2vdu_B          251 -KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN----LPFVAFF  325 (450)
T ss_dssp             -STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS----SSEEEEE
T ss_pred             -CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC----CCEEEEE
Confidence             788999999999999999998753222110                       023456889999998    7888888


Q ss_pred             e-cCCeEEEEEe--CCC-CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC------CCeEEEEEcC
Q psy12911        225 S-VEGRVAIQYV--NPA-NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS------EGTFSFWDKD  291 (356)
Q Consensus       225 ~-~dg~i~i~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~------dg~i~iwd~~  291 (356)
                      + .++.|++|++  ... ....+..+..+ .           .|.+++|+|++.++++++.      +..|.+|.+.
T Consensus       326 ~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~-----------~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          326 VEATKCIIILEMSEKQKGDLALKQIITFP-Y-----------NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             ETTCSEEEEEEECSSSTTCEEEEEEEECS-S-----------CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             ECCCCeEEEEEeccCCCCceeeccEeccC-C-----------ceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            8 8999999999  322 11334455555 3           7999999996544444443      4558888765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.4e-31  Score=225.73  Aligned_cols=241  Identities=15%  Similarity=0.131  Sum_probs=192.9

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEE--ccCCCeEEEEcCCCeE
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAW--IDDGTKVFMAGCDKTV  100 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i  100 (356)
                      ..+.+|.+.|++++|+|++   ++|++++.||.|++||+.+.  .. ..+..|...|.+++|  ++++++|++++.||.|
T Consensus        80 ~~~~~h~~~v~~~~~~~~~---~~l~s~~~dg~v~iwd~~~~--~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i  153 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDG---SKVFTASCDKTAKMWDLSSN--QA-IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL  153 (368)
T ss_dssp             EEEEECSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTT--EE-EEEEECSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred             EEeccccCCEEEEEECcCC---CEEEEEcCCCcEEEEEcCCC--Cc-eeeccccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence            6778899999999999999   99999999999999999873  33 335679999999999  8899999999999999


Q ss_pred             EEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe-----CCCeeEEEecCCCe---
Q psy12911        101 KCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN-----LPERCYCADVDYPL---  172 (356)
Q Consensus       101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~---  172 (356)
                      ++||+++++.+........+.++.+.  .  ..+++++.++.+++||++.........     ....+..+......   
T Consensus       154 ~vwd~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (368)
T 3mmy_A          154 KFWDTRSSNPMMVLQLPERCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT  229 (368)
T ss_dssp             EEECSSCSSCSEEEECSSCEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred             EEEECCCCcEEEEEecCCCceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC
Confidence            99999999887755556677777776  3  478889999999999998765433322     12235555555543   


Q ss_pred             -EEEEecCCeEEEEeCCCCcc-ccccccCcccc------------cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        173 -AVVGTAGRGIVLYQLEGKPQ-EFKKTESPLKY------------QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       173 -~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~------------~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                       +++++.|+.|++||++.... ........+..            .+.+++|+|+    +.++++++.||.|++||++..
T Consensus       230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV----HGTLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTT----TCCEEEEETTSCEEEEETTTT
T ss_pred             eEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecC----CCEEEEEccCCeEEEEECCCC
Confidence             99999999999999988642 11111112222            6999999999    789999999999999999865


Q ss_pred             CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                        +.+..+..|..           +|.+++|+|+|++|++++.|+..+.|++
T Consensus       306 --~~~~~~~~~~~-----------~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          306 --TKLKTSEQLDQ-----------PISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             --EEEEECCCCSS-----------CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             --cEEEEecCCCC-----------CceEEEECCCCCeEEEEecccccccccc
Confidence              56777777776           8999999999999999999886555543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-31  Score=224.72  Aligned_cols=221  Identities=16%  Similarity=0.212  Sum_probs=177.9

Q ss_pred             CCceEEeCCCCCCeeEEEecCC--CCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC--CCeEEEE
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPS--TLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD--GTKVFMA   94 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~--~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~   94 (356)
                      .+....+.+|.+.|++++|+++  +   ++|++|+.||.|++||+.++.......+..|...|.+++|+|+  +++|+++
T Consensus        45 ~~~~~~~~~h~~~v~~~~~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  121 (379)
T 3jrp_A           45 HKLIDTLTGHEGPVWRVDWAHPKFG---TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA  121 (379)
T ss_dssp             EEEEEEECCCSSCEEEEEECCGGGC---SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             ceeeeEecCCCCcEEEEEeCCCCCC---CEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEe
Confidence            3455678899999999999977  7   8999999999999999998543466778889999999999999  9999999


Q ss_pred             cCCCeEEEEEcCCCce---eeecccCCCeeEEEEEeCC-------------CCCeEEEEECCCeEEEEeCCCCCceEEEe
Q psy12911         95 GCDKTVKCWDLASNQS---MQVAQHDAPVKTCHWIKAP-------------NYTCLMTGSWDKTLKFWDLRTPQPIMTIN  158 (356)
Q Consensus        95 ~~dg~i~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  158 (356)
                      +.|+.|++||+..+..   ..+..|...|.+++|+  |             ++.+|++++.||.|++||+++++....+.
T Consensus       122 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  199 (379)
T 3jrp_A          122 SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA--PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  199 (379)
T ss_dssp             ETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC--CCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             cCCCcEEEEecCCCCceeeEEecCCCCceEEEEEc--CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE
Confidence            9999999999998743   2366899999999999  6             68899999999999999987765432221


Q ss_pred             CCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        159 LPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                                                           .....|...+.+++|+|+.. .+.++++++.||.|++|+++..
T Consensus       200 -------------------------------------~~~~~h~~~v~~~~~sp~~~-~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          200 -------------------------------------STLEGHSDWVRDVAWSPTVL-LRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             -------------------------------------EEECCCSSCEEEEEECCCCS-SSEEEEEEETTSCEEEEEESST
T ss_pred             -------------------------------------EEEecccCcEeEEEECCCCC-CCCeEEEEeCCCEEEEEeCCCC
Confidence                                                 00113567789999999821 0368999999999999999876


Q ss_pred             CCCCccee---eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc
Q psy12911        239 NPKDNFTF---KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       239 ~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~  293 (356)
                      .......+   ..|..           .|.+++|+|++++|++++.||.|++|++..+
T Consensus       242 ~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          242 QGPWKKTLLKEEKFPD-----------VLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             TSCCEEEESSSSCCSS-----------CEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             CccceeeeeccccCCC-----------cEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            42222221   22333           8999999999999999999999999998743

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.3e-31  Score=223.14  Aligned_cols=254  Identities=14%  Similarity=0.202  Sum_probs=178.0

Q ss_pred             CceEEeCCCCCCeeEEEecC--CCCCceEEEEEeCCCeEEEEeccCCCc-------eeeeeeccCCcceeEEEEccC--C
Q psy12911         20 KDFEVVSPPEDSISCMAFSP--STLPQYFLIAGSWDNNVRCWEVEPNGK-------TIPKSMQGMSEPVLDVAWIDD--G   88 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~--~~~~~~~l~~~~~dg~i~vw~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~--~   88 (356)
                      +....+.+|...|++++|+|  ++   ++|++|+.||.|++||+..+..       .....+..|...|.+++|+|+  +
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~---~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  124 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYG---RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG  124 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGC---SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred             eecceeccCCCcEEEEEEcCCCCC---CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC
Confidence            45666789999999999999  57   8999999999999999987432       445778889999999999999  9


Q ss_pred             CeEEEEcCCCeEEEEEcCCCceeee--------------cccCCCeeEEEEEeCCC---CCeEEEEECCCeEEEEeCCCC
Q psy12911         89 TKVFMAGCDKTVKCWDLASNQSMQV--------------AQHDAPVKTCHWIKAPN---YTCLMTGSWDKTLKFWDLRTP  151 (356)
Q Consensus        89 ~~l~~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~v~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~  151 (356)
                      ++|++++.||.|++||+.+++.+..              ..|...+.+++|+  |+   +.++++++.|+.+.+|+...+
T Consensus       125 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~~~~~~  202 (351)
T 3f3f_A          125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWC--PSRFSPEKLAVSALEQAIIYQRGKDG  202 (351)
T ss_dssp             SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEEC--CCSSSCCEEEEEETTEEEEEEECTTS
T ss_pred             cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEec--cCCCCCcEEEEecCCCcEEEEccCCC
Confidence            9999999999999999998765431              2578899999999  65   889999999999988888777


Q ss_pred             Cc--eEEEeCCC-e--eEEEecCC----CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEE
Q psy12911        152 QP--IMTINLPE-R--CYCADVDY----PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYG  222 (356)
Q Consensus       152 ~~--~~~~~~~~-~--~~~~~~~~----~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  222 (356)
                      +.  +..+..+. .  .+.+++.+    ..+++++.|+.|++||++..........  ...........+.    .....
T Consensus       203 ~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~  276 (351)
T 3f3f_A          203 KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE--SLTNSNMFDNSAD----VDMDA  276 (351)
T ss_dssp             CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------
T ss_pred             ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC--cccceeccCCCcc----ccccc
Confidence            65  55555443 3  44555555    5799999999999999987643222111  1112222222222    22222


Q ss_pred             Eee----cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC
Q psy12911        223 LGS----VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK  297 (356)
Q Consensus       223 ~~~----~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~  297 (356)
                      .+.    ....+.+|+..  ....+..+.+|..           .|++++|+|++++|++++.||.|++||+.+++.+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~-----------~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          277 QGRSDSNTEEKAELQSNL--QVELLSEHDDHNG-----------EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             --------------CCSE--EEEEEEEECTTSS-----------CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred             ccccccccceeeeecccc--cccEEEEEecccc-----------cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence            222    22223333221  1244556666766           89999999999999999999999999999875443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=7.5e-30  Score=206.58  Aligned_cols=255  Identities=9%  Similarity=0.023  Sum_probs=172.1

Q ss_pred             CCCCCceEEeCCCCC----CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-ceeeeeeccCCc-------------
Q psy12911         16 PNPNKDFEVVSPPED----SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-KTIPKSMQGMSE-------------   77 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~----~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~-------------   77 (356)
                      +...+.+..++...+    .+.++-|-..+.....+++++ ...|++|+..... .+..+++..|..             
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  100 (356)
T 2w18_A           22 PGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN  100 (356)
T ss_dssp             --CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS
T ss_pred             cceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc
Confidence            334455566665554    366676766553334667777 4699999998831 144566666654             


Q ss_pred             ------------ceeEEEEccC----CCeEEEEcC--------------------CCeEEEEEcCC-Cceee-ecccCCC
Q psy12911         78 ------------PVLDVAWIDD----GTKVFMAGC--------------------DKTVKCWDLAS-NQSMQ-VAQHDAP  119 (356)
Q Consensus        78 ------------~v~~~~~s~~----~~~l~~~~~--------------------dg~i~vwd~~~-~~~~~-~~~~~~~  119 (356)
                                  .|.+++|+||    ++.+++++.                    |+.|++|++.. ++.+. ...|...
T Consensus       101 ~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~  180 (356)
T 2w18_A          101 LVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE  180 (356)
T ss_dssp             CEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS
T ss_pred             eeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc
Confidence                        4566777778    777776553                    78888888844 55544 6778888


Q ss_pred             eeEEEEEe-CCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe------eEEEecCCCeE------------EEEecCC
Q psy12911        120 VKTCHWIK-APNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER------CYCADVDYPLA------------VVGTAGR  180 (356)
Q Consensus       120 v~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~------------~~~~~d~  180 (356)
                      ++.++|++ ..++.+|++++.|++|+|||++++++++++..+..      ..++++++..+            ++|+.|+
T Consensus       181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~  260 (356)
T 2w18_A          181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF  260 (356)
T ss_dssp             SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred             eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence            88888883 22779999999999999999999999999986432      23466666554            5678899


Q ss_pred             eEEEEeCCCCccccccc---cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCC
Q psy12911        181 GIVLYQLEGKPQEFKKT---ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG  257 (356)
Q Consensus       181 ~i~i~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  257 (356)
                      +|++||..++.......   ...+....  +..+.+    +..+++++.|++|+|||+..+  +.+.++.+|..      
T Consensus       261 tIklWd~~tgk~l~v~~~~~p~Gh~~~~--lsg~~s----g~~lASgS~DgTIkIWDl~tG--k~l~tL~gH~~------  326 (356)
T 2w18_A          261 QLIVINPKTTLSVGVMLYCLPPGQAGRF--LEGDVK----DHCAAAILTSGTIAIWDLLLG--QCTALLPPVSD------  326 (356)
T ss_dssp             EEEEEETTTTEEEEEEEECCCTTCCCCE--EEEEEE----TTEEEEEETTSCEEEEETTTC--SEEEEECCC--------
T ss_pred             EEEEEECCCCEEEEEEEeeccCCCccee--EccccC----CCEEEEEcCCCcEEEEECCCC--cEEEEecCCCC------
Confidence            99999998875332110   11222222  222222    457899999999999999876  67888888875      


Q ss_pred             cccccce-EEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        258 VQDIYAV-NGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       258 ~~~~~~i-~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                           .+ ..++|||||++|++|+.|++|+|||+
T Consensus       327 -----~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          327 -----QHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             -----CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence                 44 46899999999999999999999995

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.4e-31  Score=222.12  Aligned_cols=216  Identities=10%  Similarity=0.058  Sum_probs=168.9

Q ss_pred             EEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC---------CCCc
Q psy12911         83 AWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR---------TPQP  153 (356)
Q Consensus        83 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~  153 (356)
                      .+.+++.+|++|+.||+|++||+.+++.+.... ...|.++.|+  |+   +++++.|++|++|+..         +++.
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~--~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEH--PA---IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCC--CS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeC--Cc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            345678899999999999999999988776333 5678888888  55   9999999999999655         5555


Q ss_pred             eEEEeCC--Cee--EEEec--CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC
Q psy12911        154 IMTINLP--ERC--YCADV--DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE  227 (356)
Q Consensus       154 ~~~~~~~--~~~--~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d  227 (356)
                      +..+...  ..+  +.+++  .+.++++++.|+.|++||++++.. .......+...+.+++|+|+    +.++++|+.|
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pd----g~~lasg~~d  191 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKD----SLLLALYSPD  191 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTT----SCEEEEECTT
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCC----CCEEEEEcCC
Confidence            6666632  234  44455  667999999999999999998765 22223345567999999999    8899999999


Q ss_pred             CeEEEEEeCCCCCCCc-ceeee-ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC---C
Q psy12911        228 GRVAIQYVNPANPKDN-FTFKC-HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA---M  302 (356)
Q Consensus       228 g~i~i~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~  302 (356)
                      |.|++||++..  +.. ..+.. |..           +|++++|+|++.+|++++. +.|++||+++++.+..+..   |
T Consensus       192 g~i~iwd~~~~--~~~~~~~~~~h~~-----------~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~  257 (343)
T 3lrv_A          192 GILDVYNLSSP--DQASSRFPVDEEA-----------KIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIP  257 (343)
T ss_dssp             SCEEEEESSCT--TSCCEECCCCTTS-----------CEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-
T ss_pred             CEEEEEECCCC--CCCccEEeccCCC-----------CEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccc
Confidence            99999999876  334 56666 766           8999999999999999994 5999999999877666554   4


Q ss_pred             ccceE--EEEECCCCCEEEEEec
Q psy12911        303 DMSIS--TCALNHNGQIFAYAVS  323 (356)
Q Consensus       303 ~~~v~--~~~~s~~~~~l~~~s~  323 (356)
                      ...+.  +++|+|+|++|+++++
T Consensus       258 ~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          258 EFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             ----CCEEEEECTTSSEEEEEET
T ss_pred             cccccceEEEECCCCCEEEEecC
Confidence            44444  6999999999999887

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.8e-29  Score=218.67  Aligned_cols=215  Identities=19%  Similarity=0.295  Sum_probs=175.2

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCce-EEEEEeCCCeEEEEeccCCCc-----eeeeeeccCCcceeEEEEcc-CCCeE
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQY-FLIAGSWDNNVRCWEVEPNGK-----TIPKSMQGMSEPVLDVAWID-DGTKV   91 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~s~-~~~~l   91 (356)
                      ......+.+|...|++++|+|++   . +|++|+.||.|++|++.....     .....+.+|...|.+++|+| ++.+|
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l  247 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNPNL---NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF  247 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECTTS---TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE
T ss_pred             CCCcEEecCCCCCeEEEEeCCCC---CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE
Confidence            56677788999999999999998   6 999999999999999987322     11356678999999999999 67889


Q ss_pred             EEEcCCCeEEEEEcCCC---ceee-ecccCCCeeEEEEEeCCCCC-eEEEEECCCeEEEEeCCCC-CceEEEeCCCeeEE
Q psy12911         92 FMAGCDKTVKCWDLASN---QSMQ-VAQHDAPVKTCHWIKAPNYT-CLMTGSWDKTLKFWDLRTP-QPIMTINLPERCYC  165 (356)
Q Consensus        92 ~~~~~dg~i~vwd~~~~---~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~  165 (356)
                      ++++.|+.|++||++++   +... +..|...|++++|+  |++. +|++|+.||.|++||+++. +.+..+..      
T Consensus       248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~--p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~------  319 (430)
T 2xyi_A          248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN--PYSEFILATGSADKTVALWDLRNLKLKLHSFES------  319 (430)
T ss_dssp             EEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEEC--SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC------
T ss_pred             EEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeC--CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec------
Confidence            99999999999999987   3333 66899999999999  8776 6889999999999999874 44444432      


Q ss_pred             EecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC------
Q psy12911        166 ADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN------  239 (356)
Q Consensus       166 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~------  239 (356)
                                                         +...+.+++|+|++   ..++++++.|+.|++||+....      
T Consensus       320 -----------------------------------h~~~v~~i~~sp~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~  361 (430)
T 2xyi_A          320 -----------------------------------HKDEIFQVQWSPHN---ETILASSGTDRRLHVWDLSKIGEEQSTE  361 (430)
T ss_dssp             -----------------------------------CSSCEEEEEECSSC---TTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred             -----------------------------------CCCCEEEEEECCCC---CCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence                                               45678889999983   2468888999999999987532      


Q ss_pred             ------CCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcCcc
Q psy12911        240 ------PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       240 ------~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~~~  293 (356)
                            +..+..+.+|..           .|++++|+|+++ +|++++.||.|+||++...
T Consensus       362 ~~~~~~~~~~~~~~~h~~-----------~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          362 DAEDGPPELLFIHGGHTA-----------KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             HHHHCCTTEEEECCCCSS-----------CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             ccccCCcceEEEcCCCCC-----------CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                  133445556655           899999999998 9999999999999998754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=3.4e-28  Score=211.15  Aligned_cols=240  Identities=11%  Similarity=0.067  Sum_probs=193.1

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEE-EEcCCCeEEEE
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVF-MAGCDKTVKCW  103 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vw  103 (356)
                      +.+|.+.|.+++|++++   .++++++.|+.|++||+++  ......+..|...+.+++|+|++++++ +++.|+.|++|
T Consensus       165 ~~~~~~~v~~~~~~~~~---~~~~s~~~d~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~  239 (433)
T 3bws_A          165 YKKKLGFVETISIPEHN---ELWVSQMQANAVHVFDLKT--LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI  239 (433)
T ss_dssp             HHTTCCEEEEEEEGGGT---EEEEEEGGGTEEEEEETTT--CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccccCCceeEEEEcCCC---EEEEEECCCCEEEEEECCC--ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence            45789999999999998   9999999999999999987  344466778899999999999999885 45579999999


Q ss_pred             EcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEE--------CCCeEEEEeCCCCCceEEEeCCC--eeEEEecCCCeE
Q psy12911        104 DLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGS--------WDKTLKFWDLRTPQPIMTINLPE--RCYCADVDYPLA  173 (356)
Q Consensus       104 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~  173 (356)
                      |+.+++.+....+...+.+++|+  |+++.+++++        .|+.|++||+++++.+..+....  ..++++++++.+
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~~~--~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l  317 (433)
T 3bws_A          240 DRKTKLEIRKTDKIGLPRGLLLS--KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKI  317 (433)
T ss_dssp             ETTTTEEEEECCCCSEEEEEEEC--TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEE
T ss_pred             ECCCCcEEEEecCCCCceEEEEc--CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEE
Confidence            99999887766666779999999  9999999888        58899999999998777764333  345566667655


Q ss_pred             -EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec---------------CCeEEEEEeCC
Q psy12911        174 -VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV---------------EGRVAIQYVNP  237 (356)
Q Consensus       174 -~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------------dg~i~i~~~~~  237 (356)
                       ++++.++.|++||+.++......   .+...+.+++|+|+    +..+++++.               ||.|++||...
T Consensus       318 ~~~~~~~~~v~v~d~~~~~~~~~~---~~~~~~~~~~~s~d----g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~  390 (433)
T 3bws_A          318 YVSDMCCSKIEVYDLKEKKVQKSI---PVFDKPNTIALSPD----GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT  390 (433)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEE---ECSSSEEEEEECTT----SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred             EEEecCCCEEEEEECCCCcEEEEe---cCCCCCCeEEEcCC----CCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence             55688999999999976533222   24567899999999    777777766               57999999876


Q ss_pred             CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC-CCeEEEEEcCc
Q psy12911        238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS-EGTFSFWDKDA  292 (356)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-dg~i~iwd~~~  292 (356)
                      .  +.+..+..+.            .+.+++|+|+|++|++++. |+.|++|+++.
T Consensus       391 ~--~~~~~~~~~~------------~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          391 D--TVKEFWEAGN------------QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             T--EEEEEEECSS------------SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             C--cEEEEecCCC------------CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            5  4455555432            6899999999999987764 99999999863

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-29  Score=233.38  Aligned_cols=210  Identities=15%  Similarity=0.182  Sum_probs=175.3

Q ss_pred             CceEEeCCCCCCeeEEEecCC--CCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC--CCeEEEEc
Q psy12911         20 KDFEVVSPPEDSISCMAFSPS--TLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD--GTKVFMAG   95 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~--~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~   95 (356)
                      +....+.+|.+.|++++|+|+  +   ++|++|+.||.|++||+.++.......+.+|...|.+++|+|+  ++++++|+
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~~~~---~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs  120 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHPKFG---TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS  120 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCTTSC---SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             ccceeccCCcCceEEEEecCCCCC---CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEe
Confidence            456678899999999999988  7   9999999999999999998544466778889999999999999  99999999


Q ss_pred             CCCeEEEEEcCCCce---eeecccCCCeeEEEEEeCC-------------CCCeEEEEECCCeEEEEeCCCCC----ceE
Q psy12911         96 CDKTVKCWDLASNQS---MQVAQHDAPVKTCHWIKAP-------------NYTCLMTGSWDKTLKFWDLRTPQ----PIM  155 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~----~~~  155 (356)
                      .||.|++||+.++..   ....+|...|.+++|+  |             ++.++++|+.||.|++||++++.    ...
T Consensus       121 ~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~--p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  198 (753)
T 3jro_A          121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA--PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES  198 (753)
T ss_dssp             TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEEC--CCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred             CCCcEEEEEeecCCCcceeEeecCCCceEEEEec--CcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee
Confidence            999999999988743   3367899999999999  6             58999999999999999998874    344


Q ss_pred             EEeCCC-e--eEEEecC---CCeEEEEecCCeEEEEeCCCCccc---cccccCcccccceEEEeecCCCCCCCeEEEeec
Q psy12911        156 TINLPE-R--CYCADVD---YPLAVVGTAGRGIVLYQLEGKPQE---FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV  226 (356)
Q Consensus       156 ~~~~~~-~--~~~~~~~---~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  226 (356)
                      .+..+. .  .+++++.   +..+++++.||.|++||++.+...   .......+...+.+++|+|+    +..+++++.
T Consensus       199 ~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd----g~~l~s~s~  274 (753)
T 3jro_A          199 TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS----GNVLALSGG  274 (753)
T ss_dssp             EECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTT----TCCEEEECS
T ss_pred             eecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCC----CCEEEEEcC
Confidence            555544 3  4455566   678999999999999999886422   12222346788999999999    789999999


Q ss_pred             CCeEEEEEeCCC
Q psy12911        227 EGRVAIQYVNPA  238 (356)
Q Consensus       227 dg~i~i~~~~~~  238 (356)
                      ||.|++|+++..
T Consensus       275 Dg~I~vwd~~~~  286 (753)
T 3jro_A          275 DNKVTLWKENLE  286 (753)
T ss_dssp             SSCEECCBCCSS
T ss_pred             CCEEEEEecCCC
Confidence            999999999753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=4.3e-29  Score=213.65  Aligned_cols=224  Identities=10%  Similarity=0.031  Sum_probs=154.5

Q ss_pred             EEeCCCCCCeeEEEecC--------CCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCC-eEEE
Q psy12911         23 EVVSPPEDSISCMAFSP--------STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT-KVFM   93 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~--------~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~   93 (356)
                      ..+.+|.+.|++++|+|        ++   ++||+|+.|++|+|||+.+.  .....+..|..+|.+++|+|++. +|++
T Consensus       130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~---~~las~s~D~tv~~Wd~~~~--~~~~~~~~~~~~v~~v~~~p~~~~~l~~  204 (393)
T 4gq1_A          130 GGKSGHHNFVNDIDIADVYSADNRLAE---QVIASVGDDCTLIIWRLTDE--GPILAGYPLSSPGISVQFRPSNPNQLIV  204 (393)
T ss_dssp             CTTTSCSSCEEEEEEEEEECTTCSEEE---EEEEEEETTSEEEEEEEETT--EEEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred             cccCCCCCceEEEEEccccccccCCCC---CEEEEEECCCeEEEEECCCC--ceeeeecCCCCCcEEEEECCCCCceEEe
Confidence            34689999999999998        67   89999999999999999873  33356667899999999999874 7999


Q ss_pred             EcCCCeEEEEEcCCCceee--------------------------ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEe
Q psy12911         94 AGCDKTVKCWDLASNQSMQ--------------------------VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD  147 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~~~--------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd  147 (356)
                      ++.|++|++||+.+++...                          ..+|...+.++.|.+ +++..|++++.|+.+++||
T Consensus       205 ~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd  283 (393)
T 4gq1_A          205 GERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWN  283 (393)
T ss_dssp             EETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEE
T ss_pred             cCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEE
Confidence            9999999999998765321                          235778899999974 7899999999999999999


Q ss_pred             CCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC
Q psy12911        148 LRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE  227 (356)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d  227 (356)
                      +..++....+..+...                    ++........ .. .... .......++|..  ++.++++|+.|
T Consensus       284 ~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~--~~~~~~sgs~D  338 (393)
T 4gq1_A          284 LFANNDYNEISDSTMK--------------------LGPKNLLPNV-QG-ISLF-PSLLGACPHPRY--MDYFATAHSQH  338 (393)
T ss_dssp             C---------------------------------------CCSCSE-EE-ECSS-CCSSCCEECSSC--TTEEEEEETTT
T ss_pred             CccCCCCceEeeecCc--------------------cccEEEcccc-cc-cccc-CcceeEEEccCC--CCEEEEEECCC
Confidence            9888766665443211                    1111100000 00 0011 112233344431  14567778899


Q ss_pred             CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        228 GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       228 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      |.|++||+...  .....+..|..           +|.+++|||||++||+++.+| +.+|.+.
T Consensus       339 g~V~lwd~~~~--~~~~~~~~~~~-----------~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          339 GLIQLINTYEK--DSNSIPIQLGM-----------PIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             TEEEEEETTCT--TCCEEEEECSS-----------CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             CEEEEEECCCC--cEEEEecCCCC-----------cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            99999999766  55666777776           899999999999999998776 6666553

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=1.1e-28  Score=212.42  Aligned_cols=281  Identities=12%  Similarity=0.051  Sum_probs=206.8

Q ss_pred             CCCeeEEEecCCCCCceEEEEEe----CCC----eEEEEec--cCCCceeeeeeccCCcceeEEEEcc------------
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGS----WDN----NVRCWEV--EPNGKTIPKSMQGMSEPVLDVAWID------------   86 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~----~dg----~i~vw~~--~~~~~~~~~~~~~~~~~v~~~~~s~------------   86 (356)
                      ...|...+|.+.+  .+++++|+    .||    .|+|||+  .++.......+.+|...+..+++++            
T Consensus        62 ~~~~~~~~w~~~g--~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~  139 (415)
T 2hqs_A           62 AQEVQPAAWSALG--IDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK  139 (415)
T ss_dssp             GGGCCHHHHHTTT--CCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred             ccCcCHHHHHhcC--CCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence            3578888999988  46777886    467    8999999  7744333356888988888888775            


Q ss_pred             --CCCeEEEEcCC------CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCC---eEEEEeCCCCCceE
Q psy12911         87 --DGTKVFMAGCD------KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK---TLKFWDLRTPQPIM  155 (356)
Q Consensus        87 --~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~  155 (356)
                        .+..++.++.+      +.|++||+..+....+..|...+.+++|+  |+|+.|++++.++   .|++||+.+++...
T Consensus       140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~S--pdg~~la~~s~~~~~~~i~~~d~~tg~~~~  217 (415)
T 2hqs_A          140 GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWS--PDGSKLAYVTFESGRSALVIQTLANGAVRQ  217 (415)
T ss_dssp             CCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred             CcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEc--CCCCEEEEEEecCCCcEEEEEECCCCcEEE
Confidence              15566666654      79999999877766688899999999999  9999999999885   99999999988765


Q ss_pred             EEeCCC--eeEEEecCCCeEE-EEecCC--eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec-CC-
Q psy12911        156 TINLPE--RCYCADVDYPLAV-VGTAGR--GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV-EG-  228 (356)
Q Consensus       156 ~~~~~~--~~~~~~~~~~~~~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-dg-  228 (356)
                      ......  ....+++++..++ +++.++  .|++||+.++...  . ...+...+.+++|+|+    +..+++++. ++ 
T Consensus       218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~--~-l~~~~~~~~~~~~spd----g~~l~~~s~~~g~  290 (415)
T 2hqs_A          218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--Q-VTDGRSNNTEPTWFPD----SQNLAFTSDQAGR  290 (415)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--E-CCCCSSCEEEEEECTT----SSEEEEEECTTSS
T ss_pred             eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE--e-CcCCCCcccceEECCC----CCEEEEEECCCCC
Confidence            443333  3456667777777 555554  4999999876532  1 2235567899999999    777887775 45 


Q ss_pred             -eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC---CeEEEEEcCcceecCCCCCCcc
Q psy12911        229 -RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE---GTFSFWDKDARTKLKPSEAMDM  304 (356)
Q Consensus       229 -~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~  304 (356)
                       .|++|++...  + ...+..+..           .+.+++|+|+|++|++++.+   ..|++||+.+++.. .+..+. 
T Consensus       291 ~~i~~~d~~~~--~-~~~l~~~~~-----------~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-  354 (415)
T 2hqs_A          291 PQVYKVNINGG--A-PQRITWEGS-----------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-  354 (415)
T ss_dssp             CEEEEEETTSS--C-CEECCCSSS-----------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-
T ss_pred             cEEEEEECCCC--C-EEEEecCCC-----------cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-
Confidence             4556666543  2 223333333           68899999999999988764   58999999988764 444454 


Q ss_pred             ceEEEEECCCCCEEEEEeccCCcCCCccCCCC
Q psy12911        305 SISTCALNHNGQIFAYAVSYDWSKGHEHNNPN  336 (356)
Q Consensus       305 ~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~  336 (356)
                      .+.+++|+|||++|++++.++-......++..
T Consensus       355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence            89999999999999999876532233344444

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=5.2e-28  Score=208.13  Aligned_cols=261  Identities=13%  Similarity=0.026  Sum_probs=198.9

Q ss_pred             EeCCCCCCeeEEEecCC--------------CCCceEEEEEeCC------CeEEEEeccCCCceeeeeeccCCcceeEEE
Q psy12911         24 VVSPPEDSISCMAFSPS--------------TLPQYFLIAGSWD------NNVRCWEVEPNGKTIPKSMQGMSEPVLDVA   83 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~--------------~~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~   83 (356)
                      .+.+|...+..+++++.              +   ..++.++.+      +.|++||++.  .. ...+.+|...|.+++
T Consensus       112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~---~~l~~~s~~~~~~~~~~i~i~d~~g--~~-~~~l~~~~~~v~~~~  185 (415)
T 2hqs_A          112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR---TRIAYVVQTNGGQFPYELRVSDYDG--YN-QFVVHRSPQPLMSPA  185 (415)
T ss_dssp             EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT---CEEEEEEECSSSSCCEEEEEEETTS--CS-CEEEEEESSCEEEEE
T ss_pred             EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC---CEEEEEEecCCCCccceEEEEcCCC--CC-CEEEeCCCCcceeeE
Confidence            46677777777777651              3   456655544      7999999975  22 356777999999999


Q ss_pred             EccCCCeEEEEcCCC---eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEE-EEECCCe--EEEEeCCCCCceEEE
Q psy12911         84 WIDDGTKVFMAGCDK---TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLM-TGSWDKT--LKFWDLRTPQPIMTI  157 (356)
Q Consensus        84 ~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~  157 (356)
                      |+|+|++|++++.++   .|++||+.+++...+..|...+.+++|+  |+|+.|+ +++.++.  |++||+.+++.. .+
T Consensus       186 ~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~s--pdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l  262 (415)
T 2hqs_A          186 WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFS--PDGSKLAFALSKTGSLNLYVMDLASGQIR-QV  262 (415)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTTCCEE-EC
T ss_pred             EcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEc--CCCCEEEEEEecCCCceEEEEECCCCCEE-eC
Confidence            999999999999875   9999999999988888888999999999  9999887 6665554  999999888763 44


Q ss_pred             eCCC---eeEEEecCCCeEEEEec-CC--eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC---C
Q psy12911        158 NLPE---RCYCADVDYPLAVVGTA-GR--GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE---G  228 (356)
Q Consensus       158 ~~~~---~~~~~~~~~~~~~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d---g  228 (356)
                      ..+.   ....+++++..+++++. ++  .|.+||+.++....  . ..+...+.+++|+|+    +..+++++.+   .
T Consensus       263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~--l-~~~~~~~~~~~~spd----G~~l~~~~~~~g~~  335 (415)
T 2hqs_A          263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR--I-TWEGSQNQDADVSSD----GKFMVMVSSNGGQQ  335 (415)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE--C-CCSSSEEEEEEECTT----SSEEEEEEECSSCE
T ss_pred             cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE--E-ecCCCcccCeEECCC----CCEEEEEECcCCce
Confidence            4332   34556677788887776 44  68888988764321  1 123456789999999    7888887764   5


Q ss_pred             eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC---eEEEEEcCcceecCCCCCCccc
Q psy12911        229 RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG---TFSFWDKDARTKLKPSEAMDMS  305 (356)
Q Consensus       229 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~  305 (356)
                      .|++||++...   ...+..+.            .+.+++|+|+|++|++++.++   .|++||+. ++....+..|.+.
T Consensus       336 ~i~~~d~~~~~---~~~l~~~~------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~  399 (415)
T 2hqs_A          336 HIAKQDLATGG---VQVLSSTF------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQ  399 (415)
T ss_dssp             EEEEEETTTCC---EEECCCSS------------SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSE
T ss_pred             EEEEEECCCCC---EEEecCCC------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCC
Confidence            78999987653   22333332            588999999999999888877   89999987 5567788889999


Q ss_pred             eEEEEECCCCC
Q psy12911        306 ISTCALNHNGQ  316 (356)
Q Consensus       306 v~~~~~s~~~~  316 (356)
                      |.+++|+|...
T Consensus       400 v~~~~~~~~~~  410 (415)
T 2hqs_A          400 VKFPAWSPYLH  410 (415)
T ss_dssp             EEEEEECCCCC
T ss_pred             CcCCccccccc
Confidence            99999999754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=4.1e-27  Score=208.51  Aligned_cols=302  Identities=9%  Similarity=0.029  Sum_probs=219.9

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEec--cCCCceeeeeeccCCcceeEEEEcc----CCCe
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEV--EPNGKTIPKSMQGMSEPVLDVAWID----DGTK   90 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~--~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~   90 (356)
                      ...+.+..+..+.. +.+++|+|+|   ++|++++.|+.|++||+  .+  ......+. +...+..++|+|    ||++
T Consensus       167 ~t~~~~~~i~~g~~-~~~v~~spdg---~~l~v~~~d~~V~v~D~~~~t--~~~~~~i~-~g~~p~~va~sp~~~~dg~~  239 (543)
T 1nir_A          167 DSKKIVKVIDTGYA-VHISRMSASG---RYLLVIGRDARIDMIDLWAKE--PTKVAEIK-IGIEARSVESSKFKGYEDRY  239 (543)
T ss_dssp             TTCCEEEEEECSTT-EEEEEECTTS---CEEEEEETTSEEEEEETTSSS--CEEEEEEE-CCSEEEEEEECCSTTCTTTE
T ss_pred             CCceEEEEEecCcc-cceEEECCCC---CEEEEECCCCeEEEEECcCCC--CcEEEEEe-cCCCcceEEeCCCcCCCCCE
Confidence            34445555553333 8999999999   99999999999999999  55  34445665 455679999999    9999


Q ss_pred             EEEEcC-CCeEEEEEcCCCceeeec-c----------cCC-CeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceE-
Q psy12911         91 VFMAGC-DKTVKCWDLASNQSMQVA-Q----------HDA-PVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIM-  155 (356)
Q Consensus        91 l~~~~~-dg~i~vwd~~~~~~~~~~-~----------~~~-~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~-  155 (356)
                      |++++. +++|.+||..+++++... .          |.. .+..+.++  +++ .++++...++.|.+||+.+.+.+. 
T Consensus       240 l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s--~~~~~~~vs~~~~g~i~vvd~~~~~~l~~  317 (543)
T 1nir_A          240 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS--HEHPEFIVNVKETGKVLLVNYKDIDNLTV  317 (543)
T ss_dssp             EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC--SSSSEEEEEETTTTEEEEEECTTSSSCEE
T ss_pred             EEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC--CCCCEEEEEECCCCeEEEEEecCCCccee
Confidence            999885 899999999998877632 1          223 78899999  654 456677788999999998876554 


Q ss_pred             -EEeCCC--eeEEEecCCCeEEEEe-cCCeEEEEeCCCCccccccc--cCcccccceEEEeecCCCCCCCeEEEee-cCC
Q psy12911        156 -TINLPE--RCYCADVDYPLAVVGT-AGRGIVLYQLEGKPQEFKKT--ESPLKYQNRCIAIFRDKKKQPAGYGLGS-VEG  228 (356)
Q Consensus       156 -~~~~~~--~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg  228 (356)
                       .+....  ..+.+++++.+++++. .+++|.+||..+++......  ..+|......+ ++|+.   +..++++. .++
T Consensus       318 ~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~---g~~~~s~~~~d~  393 (543)
T 1nir_A          318 TSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKY---GPVWSTSHLGDG  393 (543)
T ss_dssp             EEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTT---EEEEEEEBSSSS
T ss_pred             EEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCC---ccEEEeccCCCc
Confidence             444322  3467788888776654 58999999999876433222  11233333332 45652   44566654 589


Q ss_pred             eEEEEEeCCCC-----CCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc-------CCCeEEEEEcCcceec
Q psy12911        229 RVAIQYVNPAN-----PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG-------SEGTFSFWDKDARTKL  296 (356)
Q Consensus       229 ~i~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-------~dg~i~iwd~~~~~~~  296 (356)
                      .|.+|+++...     .+.+.++..|..           .+..+++||++++|++++       .+++|.|||+.+++..
T Consensus       394 ~V~v~d~~~~~~~~~~~~~v~~l~~~g~-----------~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          394 SISLIGTDPKNHPQYAWKKVAELQGQGG-----------GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             EEEEEECCTTTCTTTBTSEEEEEECSCS-----------CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             eEEEEEeCCCCCchhcCeEEEEEEcCCC-----------CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            99999998722     466778887765           678899999999999987       2779999999988766


Q ss_pred             -CCC--------CCCccceEEEEECCCCCEEEEEec--cCCcCCCccCCCCCCceee
Q psy12911        297 -KPS--------EAMDMSISTCALNHNGQIFAYAVS--YDWSKGHEHNNPNKGNAIF  342 (356)
Q Consensus       297 -~~~--------~~~~~~v~~~~~s~~~~~l~~~s~--~d~~~~~~~~~~~~~~~~~  342 (356)
                       ..+        ..+...+..++|+|||+.|.++..  .+-+..+.+||.+..+.+.
T Consensus       463 ~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~  519 (543)
T 1nir_A          463 YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA  519 (543)
T ss_dssp             CEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             eEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence             332        455778999999999999998852  2234566678887665543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=2e-27  Score=220.02  Aligned_cols=275  Identities=9%  Similarity=0.061  Sum_probs=206.0

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeC-CC-----eEEEEeccCCCceeeeeeccCC----------------------ccee
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSW-DN-----NVRCWEVEPNGKTIPKSMQGMS----------------------EPVL   80 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~-dg-----~i~vw~~~~~~~~~~~~~~~~~----------------------~~v~   80 (356)
                      ...|.+++|+|||   ++|++++. |+     .|++||+.++..........+.                      ..|.
T Consensus        36 ~~~~~~~~~SpdG---~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAPDG---SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECTTS---SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEecCC---CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            5579999999999   99999998 88     9999999884333222222222                      3488


Q ss_pred             EEEEccCCCeEEEEcCCCeEEEEEcCCC---ceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE
Q psy12911         81 DVAWIDDGTKVFMAGCDKTVKCWDLASN---QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI  157 (356)
Q Consensus        81 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  157 (356)
                      +++|+|||++|++++. +.|++||+.++   +...+..+...+..++|+  |||++|++++ ++.|++||+.+++.....
T Consensus       113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S--PDG~~la~~~-~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLS--PKGGFVSFIR-GRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC--TTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred             eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCC--CCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence            9999999999999886 99999999998   776778888899999999  9999999987 569999999887655443


Q ss_pred             eCCC-------------------eeEEEecCCCeEEEEecCC---------------------------------eEEEE
Q psy12911        158 NLPE-------------------RCYCADVDYPLAVVGTAGR---------------------------------GIVLY  185 (356)
Q Consensus       158 ~~~~-------------------~~~~~~~~~~~~~~~~~d~---------------------------------~i~i~  185 (356)
                      ..+.                   ..+.+++++..|++++.++                                 .|.+|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            3322                   3467888899898887665                                 88899


Q ss_pred             eCCC-CccccccccCcccccceEEEeecCCCCCCCeEEEeec-----CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcc
Q psy12911        186 QLEG-KPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV-----EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQ  259 (356)
Q Consensus       186 d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (356)
                      |+.+ +..........+...+..++| |+    +..+++++.     +..|++||....  +....+..+....      
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pD----g~~l~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~------  335 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RD----PQHLSFQRQSRDQKKLDLVEVTLASN--QQRVLAHETSPTW------  335 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EE----TTEEEEEEEETTSSEEEEEEEETTTC--CEEEEEEEECSSC------
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CC----CCEEEEEEecccCCeEEEEEEECCCC--ceEEEEEcCCCCc------
Confidence            9987 653322222245677899999 99    778887654     567888888765  3344444433200      


Q ss_pred             cccceEEEEEeCCCCEEEEEcCCCeEEEEEcC-cceecCCCCCCccceEEE-EECCCCCEEEEEeccC
Q psy12911        260 DIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD-ARTKLKPSEAMDMSISTC-ALNHNGQIFAYAVSYD  325 (356)
Q Consensus       260 ~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~s~~d  325 (356)
                       ...+..++|+|||+++++++.||.++||.+. +++ ...+..|...|..+ .|+|||+.|+.++.++
T Consensus       336 -~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~  401 (741)
T 2ecf_A          336 -VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE  401 (741)
T ss_dssp             -CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred             -CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence             0024578999999999999999988888765 344 66777788888887 5999999887776654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=2.6e-27  Score=209.82  Aligned_cols=283  Identities=11%  Similarity=0.034  Sum_probs=210.4

Q ss_pred             EecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEc--CCCceeee
Q psy12911         36 AFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL--ASNQSMQV  113 (356)
Q Consensus        36 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~--~~~~~~~~  113 (356)
                      .|+|++   .++++++.|++|.+||..++  .+...+..+.. +..++|+|||++|++++.|+.|.+||+  .+++.+..
T Consensus       144 ~~~p~~---~~~vs~~~d~~V~v~D~~t~--~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~  217 (543)
T 1nir_A          144 DLDLPN---LFSVTLRDAGQIALVDGDSK--KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE  217 (543)
T ss_dssp             CCCGGG---EEEEEEGGGTEEEEEETTTC--CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             ccCCCC---EEEEEEcCCCeEEEEECCCc--eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE
Confidence            388988   89999999999999999873  34456653323 889999999999999999999999999  78887765


Q ss_pred             cccCCCeeEEEEEeCC----CCCeEEEEEC-CCeEEEEeCCCCCceEEEeCCC------------ee--EEEecCCC-eE
Q psy12911        114 AQHDAPVKTCHWIKAP----NYTCLMTGSW-DKTLKFWDLRTPQPIMTINLPE------------RC--YCADVDYP-LA  173 (356)
Q Consensus       114 ~~~~~~v~~~~~~~~~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~------------~~--~~~~~~~~-~~  173 (356)
                      ..+...+..++|+  |    +++++++++. +++|.+||..+++++..+....            .+  +.++.++. ++
T Consensus       218 i~~g~~p~~va~s--p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~  295 (543)
T 1nir_A          218 IKIGIEARSVESS--KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  295 (543)
T ss_dssp             EECCSEEEEEEEC--CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             EecCCCcceEEeC--CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence            5566778999999  8    9999998884 8999999999999998887521            23  34445454 55


Q ss_pred             EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe-ecCCeEEEEEeCCCCCCCcceeeeecCC
Q psy12911        174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG-SVEGRVAIQYVNPANPKDNFTFKCHRSN  252 (356)
Q Consensus       174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~  252 (356)
                      ++...++.|.+||+.+...... ........+..++|+|+    +.+++++ ..++.|.+||....  +.+..+..... 
T Consensus       296 vs~~~~g~i~vvd~~~~~~l~~-~~i~~~~~~~~~~~spd----g~~l~va~~~~~~v~v~D~~tg--~l~~~i~~g~~-  367 (543)
T 1nir_A          296 VNVKETGKVLLVNYKDIDNLTV-TSIGAAPFLHDGGWDSS----HRYFMTAANNSNKVAVIDSKDR--RLSALVDVGKT-  367 (543)
T ss_dssp             EEETTTTEEEEEECTTSSSCEE-EEEECCSSCCCEEECTT----SCEEEEEEGGGTEEEEEETTTT--EEEEEEECSSS-
T ss_pred             EEECCCCeEEEEEecCCCccee-EEeccCcCccCceECCC----CCEEEEEecCCCeEEEEECCCC--eEEEeeccCCC-
Confidence            6667789999999987543221 11123456788999999    6766554 56899999999765  45555553211 


Q ss_pred             CCCCCcccccceEEEEEeCC-CCEEEEEc-CCCeEEEEEcCc-------ceecCCCCCCccceEEEEECCCCCEEEEEe-
Q psy12911        253 GGAGGVQDIYAVNGIVFHPV-HGTLATVG-SEGTFSFWDKDA-------RTKLKPSEAMDMSISTCALNHNGQIFAYAV-  322 (356)
Q Consensus       253 ~~~~~~~~~~~i~~i~~sp~-~~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s-  322 (356)
                            .+......+ ++|+ +.+++++. .|++|.+||+.+       +++++++..|.+.+..++|+|||++|++++ 
T Consensus       368 ------ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~  440 (543)
T 1nir_A          368 ------PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT  440 (543)
T ss_dssp             ------BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCT
T ss_pred             ------CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecC
Confidence                  000022223 5787 67777775 689999999998       888999999988889999999999999987 


Q ss_pred             -ccC--CcCCCccCCCCCCcee
Q psy12911        323 -SYD--WSKGHEHNNPNKGNAI  341 (356)
Q Consensus       323 -~~d--~~~~~~~~~~~~~~~~  341 (356)
                       +.|  .+....+|+......+
T Consensus       441 ~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          441 FNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             TCSSHHHHTCEEEEETTCTTSC
T ss_pred             CCCCcccCceEEEEECCCCCCC
Confidence             222  3455666666654443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.7e-27  Score=192.92  Aligned_cols=196  Identities=13%  Similarity=0.048  Sum_probs=146.1

Q ss_pred             CCCCeeEEEecCC----CCCceEEEEEeC--------------------CCeEEEEeccCCCceeeeeeccCCcceeEEE
Q psy12911         28 PEDSISCMAFSPS----TLPQYFLIAGSW--------------------DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVA   83 (356)
Q Consensus        28 h~~~V~~~~~~~~----~~~~~~l~~~~~--------------------dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~   83 (356)
                      |.+.|++++|+|+    +   +++++++.                    |+.|++|++...++ ....+.+|...+..++
T Consensus       110 ~~~~v~sla~spd~~~~~---~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~-~~~s~~~~~~~v~~l~  185 (356)
T 2w18_A          110 EIREIRALFCSSDDESEK---QVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGG-GKENQFLMPPEETILT  185 (356)
T ss_dssp             SEEEEEEECC------CC---EEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSC-EEEEEEECCCSSCEEE
T ss_pred             cccceEEEEECCCccccc---cEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCc-eeeeeccCCCceeeEE
Confidence            4457778888888    6   67776553                    88899999866443 4466778888999999


Q ss_pred             Ecc---CCCeEEEEcCCCeEEEEEcCCCceee-ecccC---CCeeEEEEEeCCCCCeE------------EEEECCCeEE
Q psy12911         84 WID---DGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHD---APVKTCHWIKAPNYTCL------------MTGSWDKTLK  144 (356)
Q Consensus        84 ~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~~l------------~~~~~dg~i~  144 (356)
                      |++   ++.+|++++.|++|+|||+.+++++. +.+|.   ..+.+++|+  |++.++            ++|+.|++|+
T Consensus       186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS--pdG~~lvs~s~~~~~w~laSGs~D~tIk  263 (356)
T 2w18_A          186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS--EMGLLFIVLSHPCAKESESLRSPVFQLI  263 (356)
T ss_dssp             EEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE--ETTEEEEEEC------------CCEEEE
T ss_pred             eeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC--CCCCEEEEeccCCCcceeeccCCCcEEE
Confidence            998   77899999999999999999999877 44443   467778999  888876            5688899999


Q ss_pred             EEeCCCCCceEEEe-----CCC-eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCccccc-ceEEEeecCCCCC
Q psy12911        145 FWDLRTPQPIMTIN-----LPE-RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQ-NRCIAIFRDKKKQ  217 (356)
Q Consensus       145 iwd~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~  217 (356)
                      +||..+++.+..+.     ++. ..+..+..+..+++++.|++|+|||+.+++..... . .|... +.+++|+|+    
T Consensus       264 lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL-~-gH~~~vvs~vafSPD----  337 (356)
T 2w18_A          264 VINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALL-P-PVSDQHWSFVKWSGT----  337 (356)
T ss_dssp             EEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEE-C-CC--CCCCEEEECSS----
T ss_pred             EEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEe-c-CCCCCeEEEEEECCC----
Confidence            99999998877652     222 24444555678999999999999999988643322 2 34444 456899999    


Q ss_pred             CCeEEEeecCCeEEEEEe
Q psy12911        218 PAGYGLGSVEGRVAIQYV  235 (356)
Q Consensus       218 ~~~~~~~~~dg~i~i~~~  235 (356)
                      +.+|++|+.|++|+|||+
T Consensus       338 G~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          338 DSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SSEEEEECTTSCEEEEEE
T ss_pred             CCEEEEEECCCcEEEecC
Confidence            889999999999999986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=8.9e-27  Score=191.47  Aligned_cols=253  Identities=11%  Similarity=0.021  Sum_probs=186.4

Q ss_pred             EEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC-Cceeeec-cc-CCCeeEEEE
Q psy12911         49 AGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS-NQSMQVA-QH-DAPVKTCHW  125 (356)
Q Consensus        49 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~-~~-~~~v~~~~~  125 (356)
                      .++.|+.|++||+.++  .. ..+..|...|.+++|+|++++|++++ ++.|++||+.+ ++..... .+ ...+.+++|
T Consensus        17 ~~~~~~~i~~~d~~~~--~~-~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~   92 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR--KM-RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI   92 (297)
T ss_dssp             -CCCCEEEEEEETTTT--EE-EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred             CCCcceeEEEEeCCCC--ce-eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence            3467899999999873  22 34556889999999999999999986 78999999999 8776643 33 477899999


Q ss_pred             EeCCCCCeEEEEEC--CC--eEEEEeCCCCCceEEEeCCCee--EEEecCCCeEE-EEecCCeEEEEeCCCCcccccccc
Q psy12911        126 IKAPNYTCLMTGSW--DK--TLKFWDLRTPQPIMTINLPERC--YCADVDYPLAV-VGTAGRGIVLYQLEGKPQEFKKTE  198 (356)
Q Consensus       126 ~~~~~~~~l~~~~~--dg--~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~  198 (356)
                      +  |++++|++++.  ++  .|..+++.+++ ...+......  +.+++++..++ ++..++.+.+|+++......... 
T Consensus        93 s--pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~-  168 (297)
T 2ojh_A           93 S--PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL-  168 (297)
T ss_dssp             C--TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC-
T ss_pred             C--CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc-
Confidence            9  99999999983  34  45555555554 4444444333  35666677666 67789999999865432222222 


Q ss_pred             CcccccceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEE
Q psy12911        199 SPLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLA  277 (356)
Q Consensus       199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~  277 (356)
                      ..+...+.+++|+|+    +..+++++ .++.+++|+++... .....+..+..           .+..++|+|+|++|+
T Consensus       169 ~~~~~~~~~~~~s~d----g~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~-----------~~~~~~~s~dg~~l~  232 (297)
T 2ojh_A          169 THGEGRNDGPDYSPD----GRWIYFNSSRTGQMQIWRVRVDG-SSVERITDSAY-----------GDWFPHPSPSGDKVV  232 (297)
T ss_dssp             CCSSSCEEEEEECTT----SSEEEEEECTTSSCEEEEEETTS-SCEEECCCCSE-----------EEEEEEECTTSSEEE
T ss_pred             ccCCCccccceECCC----CCEEEEEecCCCCccEEEECCCC-CCcEEEecCCc-----------ccCCeEECCCCCEEE
Confidence            234567899999999    67777665 58999999987433 33444544443           788999999999998


Q ss_pred             EEcCC-----------CeEEEEEcCccee--cCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        278 TVGSE-----------GTFSFWDKDARTK--LKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       278 s~~~d-----------g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +++.+           +.|++||+.+++.  +..+.+|...+.+++|+|||++|++++.++
T Consensus       233 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          233 FVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            88766           5699999988765  334447788899999999999999998765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=2.2e-25  Score=187.18  Aligned_cols=270  Identities=9%  Similarity=0.032  Sum_probs=183.9

Q ss_pred             EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-CeEEEEEcC--CCceee--ecccCCCe
Q psy12911         46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-KTVKCWDLA--SNQSMQ--VAQHDAPV  120 (356)
Q Consensus        46 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~--~~~~~~--~~~~~~~v  120 (356)
                      ++++++.|+.|++|+++..+.........+...+.+++|+|++++|++++.+ +.|.+|++.  +++...  .......+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   86 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   86 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence            4444477999999999643322222333577889999999999988888876 999999998  555432  22233488


Q ss_pred             eEEEEEeCCCCCeEEEEEC-CCeEEEEeCC---CCCceEEEeCCC--eeEEEecCCCeEEEEe-cCCeEEEEeCCC-Ccc
Q psy12911        121 KTCHWIKAPNYTCLMTGSW-DKTLKFWDLR---TPQPIMTINLPE--RCYCADVDYPLAVVGT-AGRGIVLYQLEG-KPQ  192 (356)
Q Consensus       121 ~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~  192 (356)
                      ..++|+  +++++|++++. ++.|.+||+.   ..+.+..+....  ..+.+++++..+++++ .++.|.+||+.. +..
T Consensus        87 ~~~~~s--~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           87 THISTD--HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             SEEEEC--TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             cEEEEc--CCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            999999  99998877665 8899999994   344555555444  3456777777787777 899999999987 432


Q ss_pred             ccc---cccCcccccceEEEeecCCCCCCCeEEEe-ecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEE
Q psy12911        193 EFK---KTESPLKYQNRCIAIFRDKKKQPAGYGLG-SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIV  268 (356)
Q Consensus       193 ~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  268 (356)
                      ...   .........+..++|+|+    +..++++ ..++.+.+|+++....... .........  .++.....+..++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~pd----g~~l~~~~~~~~~i~~~~~~~~~g~~~-~~~~~~~~~--~~~~~~~~~~~i~  237 (343)
T 1ri6_A          165 VAQDPAEVTTVEGAGPRHMVFHPN----EQYAYCVNELNSSVDVWELKDPHGNIE-CVQTLDMMP--ENFSDTRWAADIH  237 (343)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTT----SSEEEEEETTTTEEEEEESSCTTSCCE-EEEEEECSC--TTCCSCCCEEEEE
T ss_pred             eeecccccccCCCCCcceEEECCC----CCEEEEEeCCCCEEEEEEecCCCCcEE-EEeeccccC--ccccccCCccceE
Confidence            111   112223456788999999    6656544 5889999999975432221 111111000  0011112577899


Q ss_pred             EeCCCCEEE-EEcCCCeEEEEEcC----cceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        269 FHPVHGTLA-TVGSEGTFSFWDKD----ARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       269 ~sp~~~~l~-s~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      |+|+|++|+ ++..++.|.+||+.    +.+.+..+..+.. +.+++|+|+|++|++++.++
T Consensus       238 ~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~  298 (343)
T 1ri6_A          238 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKS  298 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTT
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCC
Confidence            999998776 55579999999998    2344444544444 88999999999999988543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=1.9e-24  Score=182.35  Aligned_cols=275  Identities=10%  Similarity=0.006  Sum_probs=204.3

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeC-------CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE-EcCCCe
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSW-------DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM-AGCDKT   99 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~   99 (356)
                      ....+..++|+|++   ++|++++.       ++.|.+||..++  .....+. ....+..++|+|+|+++++ ...++.
T Consensus        39 ~~~~~~~~~~s~dg---~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~  112 (353)
T 3vgz_A           39 VGKGAYEMAYSQQE---NALWLATSQSRKLDKGGVVYRLDPVTL--EVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSA  112 (353)
T ss_dssp             EESSEEEEEEETTT---TEEEEEECCCTTTEESEEEEEECTTTC--CEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTE
T ss_pred             hccCccceEECCCC---CEEEEEcCCCcCCCCCccEEEEcCCCC--eEEEEEe-cCCCcceEEECCCCCEEEEEecCCCE
Confidence            45678899999998   78887774       568999999873  2334443 2445788999999996655 455799


Q ss_pred             EEEEEcCCCceeee-cccCC---------CeeEEEEEeCCCCCeEEEEE--CCCeEEEEeCCCCCceEEEeC-C--CeeE
Q psy12911        100 VKCWDLASNQSMQV-AQHDA---------PVKTCHWIKAPNYTCLMTGS--WDKTLKFWDLRTPQPIMTINL-P--ERCY  164 (356)
Q Consensus       100 i~vwd~~~~~~~~~-~~~~~---------~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~-~--~~~~  164 (356)
                      |.+||..+++.+.. ..+..         .+.+++|+  ++++.+++++  .++.|.+||+.+++.+..+.. .  ...+
T Consensus       113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  190 (353)
T 3vgz_A          113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD--DATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGL  190 (353)
T ss_dssp             EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE--TTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCC
T ss_pred             EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC--CCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceE
Confidence            99999999987653 22221         26889999  9998877776  478899999999998888872 2  2466


Q ss_pred             EEecCCCeEEEEecCCeEEEEeCCCCcccccccc--CcccccceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCCCCC
Q psy12911        165 CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE--SPLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPANPK  241 (356)
Q Consensus       165 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~~~~  241 (356)
                      .+++++..++++..++.|.+||+.++........  ......+..++++|+    +..++++. .++.|.+||....  +
T Consensus       191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d----g~~l~~~~~~~~~v~~~d~~~~--~  264 (353)
T 3vgz_A          191 ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA----RQRAFITDSKAAEVLVVDTRNG--N  264 (353)
T ss_dssp             EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT----TTEEEEEESSSSEEEEEETTTC--C
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC----CCEEEEEeCCCCEEEEEECCCC--c
Confidence            7888889999999999999999988754322221  123445778999999    66665555 4599999999765  4


Q ss_pred             CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEE-EEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEE
Q psy12911        242 DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLA-TVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAY  320 (356)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  320 (356)
                      .+..+...             ....++|+|+|++++ +...++.|.+||..+++.+..+... ..+.+++|+|||++|++
T Consensus       265 ~~~~~~~~-------------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v  330 (353)
T 3vgz_A          265 ILAKVAAP-------------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYV  330 (353)
T ss_dssp             EEEEEECS-------------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEE
T ss_pred             EEEEEEcC-------------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEE
Confidence            44444432             124689999998655 4457899999999999888777643 46799999999998888


Q ss_pred             EeccCCcCCC
Q psy12911        321 AVSYDWSKGH  330 (356)
Q Consensus       321 ~s~~d~~~~~  330 (356)
                      +...+..+..
T Consensus       331 ~~~~~~~~~~  340 (353)
T 3vgz_A          331 SVKQKSTKQQ  340 (353)
T ss_dssp             EEECCCBTTB
T ss_pred             EEcccccccc
Confidence            8776555443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=4.3e-25  Score=184.68  Aligned_cols=265  Identities=10%  Similarity=0.036  Sum_probs=186.6

Q ss_pred             EecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC-CCeEEEEEcCCCce-ee-
Q psy12911         36 AFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKCWDLASNQS-MQ-  112 (356)
Q Consensus        36 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~-~~-  112 (356)
                      .|.+++  ...+++++.++.|.+||..++  .....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. .. 
T Consensus         4 ~~~~~~--~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~   78 (331)
T 3u4y_A            4 MFQTTS--NFGIVVEQHLRRISFFSTDTL--EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA   78 (331)
T ss_dssp             ---CCC--CEEEEEEGGGTEEEEEETTTC--CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred             eEcCCC--CEEEEEecCCCeEEEEeCccc--ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence            355554  256788888999999999873  3334444556666 9999999997776665 89999999999886 54 


Q ss_pred             ecccCCCeeEEEEEeCCCCCeEEEEECCC---eEEEEeCCCCCceEEEeCCCe--eEEEecCCCeEEEE-ecCCe-EEEE
Q psy12911        113 VAQHDAPVKTCHWIKAPNYTCLMTGSWDK---TLKFWDLRTPQPIMTINLPER--CYCADVDYPLAVVG-TAGRG-IVLY  185 (356)
Q Consensus       113 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~d~~-i~i~  185 (356)
                      ...+..+..+++|+  |++++++++..++   .|.+||+.+++.+..+..+..  .+.+++++..++++ ..++. |.+|
T Consensus        79 ~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~  156 (331)
T 3u4y_A           79 IQEGQSSMADVDIT--PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRF  156 (331)
T ss_dssp             EEECSSCCCCEEEC--TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred             cccCCCCccceEEC--CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEE
Confidence            44455555559999  9999998665553   899999999998888876554  45666777666655 45577 9999


Q ss_pred             eCCCCcccccc--ccCcccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCCCCC---cceeeeecCCCCCCCcc
Q psy12911        186 QLEGKPQEFKK--TESPLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPANPKD---NFTFKCHRSNGGAGGVQ  259 (356)
Q Consensus       186 d~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~  259 (356)
                      ++.........  ........+..++|+|+    +..+ +++..++.|.+||+...  +.   +..+..+.         
T Consensus       157 ~~~~~g~~~~~~~~~~~~~~~~~~~~~spd----g~~l~v~~~~~~~v~v~d~~~~--~~~~~~~~~~~~~---------  221 (331)
T 3u4y_A          157 KIDADGVLFDTGQEFISGGTRPFNITFTPD----GNFAFVANLIGNSIGILETQNP--ENITLLNAVGTNN---------  221 (331)
T ss_dssp             EECTTCCEEEEEEEEECSSSSEEEEEECTT----SSEEEEEETTTTEEEEEECSST--TSCEEEEEEECSS---------
T ss_pred             EECCCCcEeecCCccccCCCCccceEECCC----CCEEEEEeCCCCeEEEEECCCC--cccceeeeccCCC---------
Confidence            99864322111  11123455789999999    6655 45557899999999765  33   44444332         


Q ss_pred             cccceEEEEEeCCCCEEEEEc-CCCeEEEEEcCccee--c----CCCCCCcc---ceEEEEECCCCCEEEEEeccC
Q psy12911        260 DIYAVNGIVFHPVHGTLATVG-SEGTFSFWDKDARTK--L----KPSEAMDM---SISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       260 ~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd~~~~~~--~----~~~~~~~~---~v~~~~~s~~~~~l~~~s~~d  325 (356)
                         .+..++|+|+|++|++++ .++.|.+||+.+++.  +    ..+..+..   ....++|+|||++|++++.++
T Consensus       222 ---~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  294 (331)
T 3u4y_A          222 ---LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS  294 (331)
T ss_dssp             ---CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred             ---CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC
Confidence               578899999999776554 578899999998876  2    22211222   235689999999998887654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=8.3e-25  Score=183.70  Aligned_cols=267  Identities=10%  Similarity=0.063  Sum_probs=182.1

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCC-CeEEEEecc--CCCceeeeeeccCCcceeEEEEccCCCeEEEEcC-CCeEEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWD-NNVRCWEVE--PNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKC  102 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~d-g~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v  102 (356)
                      .|...+.+++|+|++   ++|++++.+ +.|.+|+++  ++.......+..+. .+..++|+|++++|++++. ++.|.+
T Consensus        35 ~~~~~~~~~~~spdg---~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~  110 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDK---RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSV  110 (343)
T ss_dssp             ECSSCCCCEEECTTS---SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ecCCCCceEEECCCC---CEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEE
Confidence            477789999999999   888888876 999999998  42333334454444 8899999999998876665 889999


Q ss_pred             EEcC---CCceeeecccCCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCC-CCceE----EEeCC--C--eeEEEecC
Q psy12911        103 WDLA---SNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRT-PQPIM----TINLP--E--RCYCADVD  169 (356)
Q Consensus       103 wd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~----~~~~~--~--~~~~~~~~  169 (356)
                      ||+.   ..+..........+.+++|+  |+++++++++ .++.|++||+.+ ++...    .+..+  .  ..+.++++
T Consensus       111 ~d~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd  188 (343)
T 1ri6_A          111 TRLEDGLPVGVVDVVEGLDGCHSANIS--PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  188 (343)
T ss_dssp             EEEETTEEEEEEEEECCCTTBCCCEEC--TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             EECCCCccccccccccCCCCceEEEEC--CCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCC
Confidence            9994   33344444455678999999  9999888887 899999999987 54432    22222  2  24567777


Q ss_pred             CCeEEEEe-cCCeEEEEeCCC--Cccc-ccc---ccCc--ccccceEEEeecCCCCCCCeEE-EeecCCeEEEEEeCCCC
Q psy12911        170 YPLAVVGT-AGRGIVLYQLEG--KPQE-FKK---TESP--LKYQNRCIAIFRDKKKQPAGYG-LGSVEGRVAIQYVNPAN  239 (356)
Q Consensus       170 ~~~~~~~~-~d~~i~i~d~~~--~~~~-~~~---~~~~--~~~~i~~~~~~~~~~~~~~~~~-~~~~dg~i~i~~~~~~~  239 (356)
                      +..+++++ .++.|.+|+++.  +... ...   ....  ....+..++|+|+    +..++ +...++.+.+|+++...
T Consensus       189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d----g~~l~v~~~~~~~i~v~d~~~~~  264 (343)
T 1ri6_A          189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD----GRHLYACDRTASLITVFSVSEDG  264 (343)
T ss_dssp             SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT----SSEEEEEETTTTEEEEEEECTTS
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC----CCEEEEEecCCCEEEEEEEcCCC
Confidence            77666554 789999999964  2211 111   1111  1234567999999    66665 45579999999997422


Q ss_pred             --CCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc-CCCeEEEEEc--Ccce--ecCCCCCCccceEEEEEC
Q psy12911        240 --PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWDK--DART--KLKPSEAMDMSISTCALN  312 (356)
Q Consensus       240 --~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd~--~~~~--~~~~~~~~~~~v~~~~~s  312 (356)
                        .+.+..+..+.            .+..++|+|+|++|++++ .++.|.+|++  .+++  .+..+.. .....+++|.
T Consensus       265 ~~~~~~~~~~~~~------------~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~  331 (343)
T 1ri6_A          265 SVLSKEGFQPTET------------QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVN  331 (343)
T ss_dssp             CCEEEEEEEECSS------------SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEE
T ss_pred             CceEEeeeecCCC------------ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEE
Confidence              22222333222            477899999999888877 6899999954  4553  3333332 2345677777


Q ss_pred             CCCC
Q psy12911        313 HNGQ  316 (356)
Q Consensus       313 ~~~~  316 (356)
                      |+.+
T Consensus       332 ~~~~  335 (343)
T 1ri6_A          332 AHEG  335 (343)
T ss_dssp             EEC-
T ss_pred             cccC
Confidence            6543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=7e-25  Score=202.98  Aligned_cols=267  Identities=13%  Similarity=0.096  Sum_probs=196.9

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS  110 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  110 (356)
                      .|.+++|+|||   ++|++++. +.|++||+.++.......+..|...+..++|+|||++|++++ ++.|++||+.+++.
T Consensus       110 ~v~~~~~SpDg---~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          110 GIVDYQWSPDA---QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ  184 (741)
T ss_dssp             ESCCCEECTTS---SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred             CcceeEECCCC---CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE
Confidence            48999999999   99999886 899999998731112345667888999999999999999987 56999999999887


Q ss_pred             eeecc-cCCC----------------eeEEEEEeCCCCCeEEEEECCC--------------------------------
Q psy12911        111 MQVAQ-HDAP----------------VKTCHWIKAPNYTCLMTGSWDK--------------------------------  141 (356)
Q Consensus       111 ~~~~~-~~~~----------------v~~~~~~~~~~~~~l~~~~~dg--------------------------------  141 (356)
                      ..+.. +...                +.++.|+  |||+.|++++.|+                                
T Consensus       185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             EECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             EEeccCCccceeccccceeeeeccccccceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            66433 2222                4789999  9999999988765                                


Q ss_pred             -eEEEEeCCC-CCceEEEeC--CC---eeEEEecCCCeEEEEec-----CCeEEEEeCCCCccccccccCcccc---cce
Q psy12911        142 -TLKFWDLRT-PQPIMTINL--PE---RCYCADVDYPLAVVGTA-----GRGIVLYQLEGKPQEFKKTESPLKY---QNR  206 (356)
Q Consensus       142 -~i~iwd~~~-~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~---~i~  206 (356)
                       .|++||+.+ ++.......  +.   ..+.+ +++..++++..     +..|.+||+.++........ ....   .+.
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~  340 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE-TSPTWVPLHN  340 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE-ECSSCCCCCS
T ss_pred             eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc-CCCCcCCcCC
Confidence             899999988 776544322  22   24566 77887876654     57899999988753322111 1111   446


Q ss_pred             EEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEE-EEeCCCCEEE-EEcCCC-
Q psy12911        207 CIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGI-VFHPVHGTLA-TVGSEG-  283 (356)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-~~sp~~~~l~-s~~~dg-  283 (356)
                      .++|+|+    +..++++..+|.++||.++... . ...+..+..           .+..+ .|+|+|+.|+ +++.++ 
T Consensus       341 ~~~~spd----g~~~~~~~~~g~~~l~~~~~~~-~-~~~l~~~~~-----------~v~~~~~~s~dg~~l~~~~~~~~~  403 (741)
T 2ecf_A          341 SLRFLDD----GSILWSSERTGFQHLYRIDSKG-K-AAALTHGNW-----------SVDELLAVDEKAGLAYFRAGIESA  403 (741)
T ss_dssp             CCEECTT----SCEEEEECTTSSCEEEEECSSS-C-EEESCCSSS-----------CEEEEEEEETTTTEEEEEECSSCT
T ss_pred             ceEECCC----CeEEEEecCCCccEEEEEcCCC-C-eeeeeecce-----------EEEeEeEEeCCCCEEEEEEeCCCC
Confidence            8899999    6788888999999999887442 2 445555543           67777 5999998775 555555 


Q ss_pred             -eEEEEEcCc-ceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        284 -TFSFWDKDA-RTKLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       284 -~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                       .++||++.. +..+..+.. ...+..++|||||++|+....+
T Consensus       404 ~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~  445 (741)
T 2ecf_A          404 RESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSN  445 (741)
T ss_dssp             TCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEE
T ss_pred             ceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecC
Confidence             899999864 554555654 5668899999999999887654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=1.5e-24  Score=207.40  Aligned_cols=273  Identities=9%  Similarity=0.051  Sum_probs=208.7

Q ss_pred             eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911         22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK  101 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  101 (356)
                      ...+.+|...+.++.|+++    .++++++.|+.+.||.+...+... ..+..|. .+..++|+|||+.|+.+. ++.|+
T Consensus       196 ~~~l~~~~~~v~~~~~s~d----~l~~~~~~dg~~~l~~~~~~g~~~-~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~  268 (1045)
T 1k32_A          196 FKKIVDMSTHVSSPVIVGH----RIYFITDIDGFGQIYSTDLDGKDL-RKHTSFT-DYYPRHLNTDGRRILFSK-GGSIY  268 (1045)
T ss_dssp             EEEEECCSSCCEEEEEETT----EEEEEECTTSSCEEEEEETTSCSC-EECCCCC-SSCEEEEEESSSCEEEEE-TTEEE
T ss_pred             eEECcCCCCcccceEEeCC----EEEEEEeccCceEEEEEeCCCCcc-eEecCCC-CcceeeEcCCCCEEEEEe-CCEEE
Confidence            4455789999999999987    577888889999999887533332 4455454 467789999999998874 89999


Q ss_pred             EEEcCCCceeeecc-----------cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC-C-eeEEEec
Q psy12911        102 CWDLASNQSMQVAQ-----------HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP-E-RCYCADV  168 (356)
Q Consensus       102 vwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~-~~~~~~~  168 (356)
                      +|++...+...+..           |...+.+++|+| |+|+.|++++ ++.|.+|++..++... +..+ . .+..+.+
T Consensus       269 ~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~-pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~  345 (1045)
T 1k32_A          269 IFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSP-LDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGG  345 (1045)
T ss_dssp             EECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEE-CGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECS
T ss_pred             EecCCceEeeeeccCcccccccccccccccceeeecC-CCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeE
Confidence            99996554443332           344789999985 6888888887 7899999998776443 3332 2 3333333


Q ss_pred             -CCCeEEEEecCCeEE-EEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee
Q psy12911        169 -DYPLAVVGTAGRGIV-LYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       169 -~~~~~~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~  246 (356)
                       ++..++.++.+..+. +||+.++...  ... .+...+..++|+|+    +..+++++.++.+++||+..+  +....+
T Consensus       346 sdg~~l~~~s~~~~l~~~~d~~~~~~~--~l~-~~~~~~~~~~~SpD----G~~la~~~~~~~v~~~d~~tg--~~~~~~  416 (1045)
T 1k32_A          346 DTKVAFIHGTREGDFLGIYDYRTGKAE--KFE-ENLGNVFAMGVDRN----GKFAVVANDRFEIMTVDLETG--KPTVIE  416 (1045)
T ss_dssp             SSEEEEEEEETTEEEEEEEETTTCCEE--ECC-CCCCSEEEEEECTT----SSEEEEEETTSEEEEEETTTC--CEEEEE
T ss_pred             cCCCeEEEEECCCceEEEEECCCCCce--Eec-CCccceeeeEECCC----CCEEEEECCCCeEEEEECCCC--ceEEec
Confidence             455788888888898 9999876432  222 45677899999999    889999999999999999765  334444


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC----------eEEEEEcCcceecCCCCCCccceEEEEECCCCC
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG----------TFSFWDKDARTKLKPSEAMDMSISTCALNHNGQ  316 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  316 (356)
                      ..|..           .+..++|||||++|++++.++          .|++||+.+++ +..+..|...+..++|+|||+
T Consensus       417 ~~~~~-----------~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~  484 (1045)
T 1k32_A          417 RSREA-----------MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK  484 (1045)
T ss_dssp             ECSSS-----------CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred             cCCCC-----------CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence            45655           788999999999999887654          89999999887 566777888899999999999


Q ss_pred             EEEEEeccC
Q psy12911        317 IFAYAVSYD  325 (356)
Q Consensus       317 ~l~~~s~~d  325 (356)
                      +|++++.++
T Consensus       485 ~l~~~s~~~  493 (1045)
T 1k32_A          485 NLYYLSYRS  493 (1045)
T ss_dssp             EEEEEESCC
T ss_pred             EEEEEeccc
Confidence            999998755

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=2.2e-24  Score=199.12  Aligned_cols=284  Identities=10%  Similarity=0.047  Sum_probs=193.8

Q ss_pred             CceEEeCCCCC---CeeEEEecCCCCCceEEEEEeCC---------CeEEEEeccCCCceeeeeeccCCcceeEEEEccC
Q psy12911         20 KDFEVVSPPED---SISCMAFSPSTLPQYFLIAGSWD---------NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD   87 (356)
Q Consensus        20 ~~~~~~~~h~~---~V~~~~~~~~~~~~~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~   87 (356)
                      +...++.+|..   .|.+++|||||   ++|++++.+         +.+.+||+.++....+....+|...+..++||||
T Consensus        48 ~~~~~~~~~~~~~~~v~~~~~SpDg---~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPd  124 (723)
T 1xfd_A           48 TSTVLIEGKKIESLRAIRYEISPDR---EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK  124 (723)
T ss_dssp             CCEEEECTTTTTTTTCSEEEECTTS---SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS
T ss_pred             cEEEEeccccccccccceEEECCCC---CEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCC
Confidence            44556666665   49999999999   999998764         7888999988443223333455666999999999


Q ss_pred             CCeEEEEcCCCeEEEEEcCCCceeeec-ccCCC------------------eeEEEEEeCCCCCeEEEEECCC-------
Q psy12911         88 GTKVFMAGCDKTVKCWDLASNQSMQVA-QHDAP------------------VKTCHWIKAPNYTCLMTGSWDK-------  141 (356)
Q Consensus        88 ~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~------------------v~~~~~~~~~~~~~l~~~~~dg-------  141 (356)
                      |+.|+.++. +.|++||+.+++...+. .+...                  +.+++|+  |||+.|++++.|+       
T Consensus       125 G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~S--pDg~~la~~~~~~~~~~~~~  201 (723)
T 1xfd_A          125 GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS--PDGTRLAYAAINDSRVPIME  201 (723)
T ss_dssp             TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC--TTSSEEEEEEEECTTSCEEE
T ss_pred             CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEEC--CCCCEEEEEEECCCccceEE
Confidence            999999885 89999999998876633 33333                  3789999  9999999987653       


Q ss_pred             ---------------------------eEEEEeCCCCCceEEEeCC------C-e--eEEEecCCCeEEEEec----CCe
Q psy12911        142 ---------------------------TLKFWDLRTPQPIMTINLP------E-R--CYCADVDYPLAVVGTA----GRG  181 (356)
Q Consensus       142 ---------------------------~i~iwd~~~~~~~~~~~~~------~-~--~~~~~~~~~~~~~~~~----d~~  181 (356)
                                                 .|++||+.+++....+..+      . .  .+.+++++..+++...    +..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~  281 (723)
T 1xfd_A          202 LPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSI  281 (723)
T ss_dssp             ECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEE
T ss_pred             eeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEE
Confidence                                       7999999998876666643      2 2  3556777777766543    368


Q ss_pred             EEEEeCCCCccccccccCcccccc----eEEEeecCCCCCCCeEEE--eecCC----eEEEEEeC-CCCCC--Ccceeee
Q psy12911        182 IVLYQLEGKPQEFKKTESPLKYQN----RCIAIFRDKKKQPAGYGL--GSVEG----RVAIQYVN-PANPK--DNFTFKC  248 (356)
Q Consensus       182 i~i~d~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~--~~~dg----~i~i~~~~-~~~~~--~~~~~~~  248 (356)
                      |.+||+.++...... ...+...+    ..++|+|+    +..++.  +..++    ...+|.++ .....  ....+..
T Consensus       282 i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~spd----g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~  356 (723)
T 1xfd_A          282 LTLCDATTGVCTKKH-EDESEAWLHRQNEEPVFSKD----GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS  356 (723)
T ss_dssp             EEEEETTTCCEEEEE-EEECSSCCCCCCCCCEECTT----SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred             EEEEeCCCCcceEEE-EeccCCEEeccCCCceEcCC----CCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence            999999887532221 11112222    37899999    666664  44566    45555554 12112  1333332


Q ss_pred             ecCCCCCCCcccccceEE-EEEeCCCCEEEEEcCC---CeEEEEEcCcce--ecCCCCC---CccceEEEEECCCCCEEE
Q psy12911        249 HRSNGGAGGVQDIYAVNG-IVFHPVHGTLATVGSE---GTFSFWDKDART--KLKPSEA---MDMSISTCALNHNGQIFA  319 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~-i~~sp~~~~l~s~~~d---g~i~iwd~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~  319 (356)
                      +..           .+.. ++|+|||+.|+..+.+   +.+++|++....  ....+..   |...+..++|+|||++|+
T Consensus       357 ~~~-----------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~  425 (723)
T 1xfd_A          357 GDW-----------DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFL  425 (723)
T ss_dssp             SSS-----------CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEE
T ss_pred             CCe-----------EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEE
Confidence            221           3444 6999999998766554   789999986432  3344443   567789999999999999


Q ss_pred             EEeccC
Q psy12911        320 YAVSYD  325 (356)
Q Consensus       320 ~~s~~d  325 (356)
                      ......
T Consensus       426 ~~~~~~  431 (723)
T 1xfd_A          426 LKCEGP  431 (723)
T ss_dssp             EECCSS
T ss_pred             EEccCC
Confidence            876543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=2.7e-24  Score=180.13  Aligned_cols=270  Identities=9%  Similarity=0.003  Sum_probs=190.1

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeec-cCCc-ceeEEEEccCCCeEE-EEcCCCeEEEEEcCCCceeeecccC----
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-GMSE-PVLDVAWIDDGTKVF-MAGCDKTVKCWDLASNQSMQVAQHD----  117 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~-~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~----  117 (356)
                      ++|++++.++.|.+||+.++  .....+. ++.. .+..++|+|++++++ ++..++.|.+||+.+++.+......    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~   79 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             cEEEEcCCCCeEEEEECCCC--cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence            68999999999999999873  3334443 2222 588999999998764 5556889999999998876533222    


Q ss_pred             --CCeeEEEEEeCCCCCeEEEEE------------CCCeEEEEeCCCCCceEEEeCCC--eeEEEecCCCeEEEEecCCe
Q psy12911        118 --APVKTCHWIKAPNYTCLMTGS------------WDKTLKFWDLRTPQPIMTINLPE--RCYCADVDYPLAVVGTAGRG  181 (356)
Q Consensus       118 --~~v~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~  181 (356)
                        ..+..++|+  ++++++++++            .++.|.+||+.+++.+..+....  ..+.+++++..++++  ++.
T Consensus        80 ~~~~~~~~~~s--~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~  155 (337)
T 1pby_B           80 RVKSLFGAALS--PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRD  155 (337)
T ss_dssp             EEECTTCEEEC--TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSS
T ss_pred             ccccccceEEC--CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCe
Confidence              267889999  9999888886            57999999999988888777544  345677778878777  689


Q ss_pred             EEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec-CC-----------------------eEEEEEeCC
Q psy12911        182 IVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV-EG-----------------------RVAIQYVNP  237 (356)
Q Consensus       182 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-dg-----------------------~i~i~~~~~  237 (356)
                      |.+||+.++............   ..+.++|+    +..++..+. ++                       .+.+||...
T Consensus       156 i~~~d~~~~~~~~~~~~~~~~---~~~~~s~d----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  228 (337)
T 1pby_B          156 LHVMDPEAGTLVEDKPIQSWE---AETYAQPD----VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET  228 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTT---TTTBCCCB----CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred             EEEEECCCCcEeeeeeccccC---CCceeCCC----ccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence            999999887543222111111   12367777    444433332 22                       467888776


Q ss_pred             CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCE
Q psy12911        238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI  317 (356)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  317 (356)
                      .... ...+..+..           .+.+++|+|+|++|+++  ++.|++||+.+++.+..+.. ...+.+++|+|||++
T Consensus       229 ~~~~-~~~~~~~~~-----------~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~  293 (337)
T 1pby_B          229 GEMA-MREVRIMDV-----------FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGST  293 (337)
T ss_dssp             CCEE-EEEEEECSS-----------CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCE
T ss_pred             CCce-EeecCCCCC-----------ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCE
Confidence            5322 222333333           68899999999999988  79999999999888776653 345789999999999


Q ss_pred             EEEEeccCCcCCCccCCCCCCceeeecc
Q psy12911        318 FAYAVSYDWSKGHEHNNPNKGNAIFLRP  345 (356)
Q Consensus       318 l~~~s~~d~~~~~~~~~~~~~~~~~~~~  345 (356)
                      |++++.   .....+|+...+..+...+
T Consensus       294 l~~~~~---~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          294 VWLGGA---LGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEESB---SSEEEEEETTTCCEEEEEE
T ss_pred             EEEEcC---CCcEEEEECcCCcEEEEEE
Confidence            998853   3445667766555444333

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=4.1e-25  Score=204.01  Aligned_cols=271  Identities=10%  Similarity=0.044  Sum_probs=192.1

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCc---ceeEEEEccCCCeEEEEcCC---------
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE---PVLDVAWIDDGTKVFMAGCD---------   97 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d---------   97 (356)
                      ..+.+++|+|+|   +++++ +.||+|++||+.++.  ....+..|..   .|.+++|||||++|++++.+         
T Consensus        17 ~~~~~~~~spdg---~~~~~-~~dg~i~~~d~~~g~--~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~   90 (723)
T 1xfd_A           17 IHDPEAKWISDT---EFIYR-EQKGTVRLWNVETNT--STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYT   90 (723)
T ss_dssp             CCCCCCCBSSSS---CBCCC-CSSSCEEEBCGGGCC--CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred             ccccccEEcCCC---cEEEE-eCCCCEEEEECCCCc--EEEEeccccccccccceEEECCCCCEEEEEecCccceeecce
Confidence            347789999999   87766 789999999998843  2345555554   49999999999999998764         


Q ss_pred             CeEEEEEcCCCceeeec---ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-------------
Q psy12911         98 KTVKCWDLASNQSMQVA---QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-------------  161 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------  161 (356)
                      +.+++||+.+++...+.   .|...+..++|+  |||+.|++++. +.|++||+.+++.......+.             
T Consensus        91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~S--PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~  167 (723)
T 1xfd_A           91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG--PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY  167 (723)
T ss_dssp             SEEEEEESSSCCCEECCCTTCCSCCCSBCCBC--SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred             eeEEEEECCCCceEeccCCccccccccccEEC--CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeE
Confidence            78899999998864433   344558999999  99999999886 799999999988776655422             


Q ss_pred             --------eeEEEecCCCeEEEEecCC----------------------------------eEEEEeCCCCccccccccC
Q psy12911        162 --------RCYCADVDYPLAVVGTAGR----------------------------------GIVLYQLEGKPQEFKKTES  199 (356)
Q Consensus       162 --------~~~~~~~~~~~~~~~~~d~----------------------------------~i~i~d~~~~~~~~~~~~~  199 (356)
                              ..+.+++++..|++++.++                                  .|.+||+.++.........
T Consensus       168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~  247 (723)
T 1xfd_A          168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP  247 (723)
T ss_dssp             HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred             EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence                    3577888888888876543                                  8999999877532211110


Q ss_pred             ----cccccceEEEeecCCCCCCCeEEEeec----CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccce----EEE
Q psy12911        200 ----PLKYQNRCIAIFRDKKKQPAGYGLGSV----EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAV----NGI  267 (356)
Q Consensus       200 ----~~~~~i~~~~~~~~~~~~~~~~~~~~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~i  267 (356)
                          .+...+..++|+|+    +..+++...    +..|++||+...  +....+..+...          .+    ..+
T Consensus       248 ~~~~~~~~~~~~~~~SpD----g~~l~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~----------~~~~~~~~~  311 (723)
T 1xfd_A          248 DDPRMREYYITMVKWATS----TKVAVTWLNRAQNVSILTLCDATTG--VCTKKHEDESEA----------WLHRQNEEP  311 (723)
T ss_dssp             CCGGGSSEEEEEEEESSS----SEEEEEEEETTSCEEEEEEEETTTC--CEEEEEEEECSS----------CCCCCCCCC
T ss_pred             ccCCCccceeEEEEEeCC----CeEEEEEEcCCCCeEEEEEEeCCCC--cceEEEEeccCC----------EEeccCCCc
Confidence                12456789999999    677766643    356888888665  333333332210          23    378


Q ss_pred             EEeCCCCEEEE--EcCCC------eEEEEE-cCcce--ecCCCCCCccceEE-EEECCCCCEEEEEeccC
Q psy12911        268 VFHPVHGTLAT--VGSEG------TFSFWD-KDART--KLKPSEAMDMSIST-CALNHNGQIFAYAVSYD  325 (356)
Q Consensus       268 ~~sp~~~~l~s--~~~dg------~i~iwd-~~~~~--~~~~~~~~~~~v~~-~~~s~~~~~l~~~s~~d  325 (356)
                      +|+|||+.|+.  +..++      .|.+|| ..+++  +...+..+...+.. ++|+|||+.|+.++.++
T Consensus       312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~  381 (723)
T 1xfd_A          312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTED  381 (723)
T ss_dssp             EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred             eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC
Confidence            99999987664  45667      577777 34444  15555544444544 69999999998877654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=8.1e-25  Score=201.49  Aligned_cols=267  Identities=10%  Similarity=0.041  Sum_probs=191.8

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC--
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS--  107 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--  107 (356)
                      ..|.+++|+|++   .++++.  ++.|++||+.++  .. ..+..+...+.+++|+|||++|+++ .++.|++||+.+  
T Consensus        82 ~~v~~~~~spd~---~~~~~~--~~~i~~~d~~~~--~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~  152 (706)
T 2z3z_A           82 FPSFRTLDAGRG---LVVLFT--QGGLVGFDMLAR--KV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLG  152 (706)
T ss_dssp             CCCEEEEETTTT---EEEEEE--TTEEEEEETTTT--EE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTT
T ss_pred             cCceeEEECCCC---eEEEEE--CCEEEEEECCCC--ce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccc
Confidence            579999999997   665553  599999999873  22 3445567789999999999999985 689999999998  


Q ss_pred             ---Cceeeec-ccCCC--------------eeEEEEEeCCCCCeEEEEE-------------------------------
Q psy12911        108 ---NQSMQVA-QHDAP--------------VKTCHWIKAPNYTCLMTGS-------------------------------  138 (356)
Q Consensus       108 ---~~~~~~~-~~~~~--------------v~~~~~~~~~~~~~l~~~~-------------------------------  138 (356)
                         ++...+. .+...              +.++.|+  |||++|++++                               
T Consensus       153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S--pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~  230 (706)
T 2z3z_A          153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS--PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT  230 (706)
T ss_dssp             SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC--TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred             ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence               7766532 23332              5899999  9999999987                               


Q ss_pred             --CCCeEEEEeCCCCCceEEEeC--C-Ce--eEEEecCCCeEEEEecCC-----eEEEEeCCCCccccccccCccc---c
Q psy12911        139 --WDKTLKFWDLRTPQPIMTINL--P-ER--CYCADVDYPLAVVGTAGR-----GIVLYQLEGKPQEFKKTESPLK---Y  203 (356)
Q Consensus       139 --~dg~i~iwd~~~~~~~~~~~~--~-~~--~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~---~  203 (356)
                        .+..|++||+.+++.......  + ..  .+.+++++..+++++.++     .|.+||+.++............   .
T Consensus       231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~  310 (706)
T 2z3z_A          231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE  310 (706)
T ss_dssp             CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred             CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence              446799999988875443322  1 22  456677788888877765     9999999887322111111111   1


Q ss_pred             cceEEEeec--CCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE-EEEeCCCCEEEEEc
Q psy12911        204 QNRCIAIFR--DKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG-IVFHPVHGTLATVG  280 (356)
Q Consensus       204 ~i~~~~~~~--~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~sp~~~~l~s~~  280 (356)
                      .+..++|+|  +    +.+++++..++.+++|.++... ..+..+..+..           .+.. ++|+|+|+.|+.++
T Consensus       311 ~~~~~~~sp~~d----g~~l~~~~~~g~~~l~~~~~~~-~~~~~l~~~~~-----------~v~~~~~~spdg~~l~~~~  374 (706)
T 2z3z_A          311 PLHPLTFLPGSN----NQFIWQSRRDGWNHLYLYDTTG-RLIRQVTKGEW-----------EVTNFAGFDPKGTRLYFES  374 (706)
T ss_dssp             CCSCCEECTTCS----SEEEEEECTTSSCEEEEEETTS-CEEEECCCSSS-----------CEEEEEEECTTSSEEEEEE
T ss_pred             ccCCceeecCCC----CEEEEEEccCCccEEEEEECCC-CEEEecCCCCe-----------EEEeeeEEcCCCCEEEEEe
Confidence            246789999  8    7788889899999999987322 34444544443           5766 79999998776554


Q ss_pred             -CCC----eEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        281 -SEG----TFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       281 -~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                       .++    .|..||+.+++ +..+. +...+.+++|||||++|+.+..++
T Consensus       375 ~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~  422 (706)
T 2z3z_A          375 TEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSP  422 (706)
T ss_dssp             SSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECS
T ss_pred             cCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCC
Confidence             444    67777877665 33333 566789999999999998876544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.94  E-value=1.2e-24  Score=195.78  Aligned_cols=259  Identities=8%  Similarity=0.021  Sum_probs=188.6

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeC-CCeEEEEeccCCCceeeeeeccCC-cceeEEEEccCCCeEEEEcC---CCeEEEE
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSW-DNNVRCWEVEPNGKTIPKSMQGMS-EPVLDVAWIDDGTKVFMAGC---DKTVKCW  103 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~---dg~i~vw  103 (356)
                      ..+|.+++|+|||   +.||+++. ||+++||+++.  ... ..+..|. ..+..++|+|| +.+++++.   +....+|
T Consensus        21 ~~~~~~~~~~~DG---~~la~~s~~~g~~~lw~~~~--g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           21 AVEKYSLQGVVDG---DKLLVVGFSEGSVNAYLYDG--GET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALF   93 (582)
T ss_dssp             HSCEEEEEEEETT---TEEEEEEEETTEEEEEEEET--TEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred             ccchheeecCCCC---CeEEEEEccCCceeEEEEcC--CCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence            4579999999999   99998877 99999999865  233 3444455 68999999999 77777664   4555665


Q ss_pred             EcCC---CceeeecccCCCeeEEEEEeCCCCC--eEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEec
Q psy12911        104 DLAS---NQSMQVAQHDAPVKTCHWIKAPNYT--CLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTA  178 (356)
Q Consensus       104 d~~~---~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (356)
                      .+..   +....+.. ...+...+|+  ++++  .++++. ++.+.+||+.+++.......+.....+++++..++.++.
T Consensus        94 ~~~~~~~g~~~~l~~-~~~~~~~~~s--~dg~~~~~~s~~-~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~  169 (582)
T 3o4h_A           94 KVNTSRPGEEQRLEA-VKPMRILSGV--DTGEAVVFTGAT-EDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF  169 (582)
T ss_dssp             EEETTSTTCCEECTT-SCSBEEEEEE--ECSSCEEEEEEC-SSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred             EEeccCCCccccccC-CCCceeeeeC--CCCCeEEEEecC-CCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEE
Confidence            4432   22223322 2334567888  5554  444444 445569999988776666655677788899999998877


Q ss_pred             C----CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC--eEEEEEeCCCCCCCcceeeeecCC
Q psy12911        179 G----RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG--RVAIQYVNPANPKDNFTFKCHRSN  252 (356)
Q Consensus       179 d----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~  252 (356)
                      +    +.|++||+.++....  + ..+...+..++|+|+    +..++++..++  .|++||++...  .. .+..+.. 
T Consensus       170 ~~~~~~~i~~~d~~~g~~~~--l-~~~~~~~~~~~~SpD----G~~l~~~~~~~~~~i~~~d~~~~~--~~-~~~~~~~-  238 (582)
T 3o4h_A          170 FGGGRVSLFTSNLSSGGLRV--F-DSGEGSFSSASISPG----MKVTAGLETAREARLVTVDPRDGS--VE-DLELPSK-  238 (582)
T ss_dssp             EETTEEEEEEEETTTCCCEE--E-CCSSCEEEEEEECTT----SCEEEEEECSSCEEEEEECTTTCC--EE-ECCCSCS-
T ss_pred             cCCCCeEEEEEcCCCCCceE--e-ecCCCccccceECCC----CCEEEEccCCCeeEEEEEcCCCCc--EE-EccCCCc-
Confidence            6    789999998775431  1 244567799999999    78898888888  78888877653  23 4444443 


Q ss_pred             CCCCCcccccceEEEE--------EeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        253 GGAGGVQDIYAVNGIV--------FHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       253 ~~~~~~~~~~~i~~i~--------~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                                .+..++        |+|||.++++++.|+.+++|++  ++.+..   ..+.|.+++|+ +++++++++++
T Consensus       239 ----------~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s~~  302 (582)
T 3o4h_A          239 ----------DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHTSL  302 (582)
T ss_dssp             ----------HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEEET
T ss_pred             ----------ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEcCC
Confidence                      444555        9999999999999999999999  766653   34678999999 99999998876


Q ss_pred             C
Q psy12911        325 D  325 (356)
Q Consensus       325 d  325 (356)
                      .
T Consensus       303 ~  303 (582)
T 3o4h_A          303 S  303 (582)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=1.7e-23  Score=176.20  Aligned_cols=269  Identities=10%  Similarity=0.046  Sum_probs=180.2

Q ss_pred             eEEEEEe----CCCeEEEEeccCCCcee-eeeeccCCcceeEEEEccCCCeEEEEcC---CCeEEEEEcCCCceee---e
Q psy12911         45 YFLIAGS----WDNNVRCWEVEPNGKTI-PKSMQGMSEPVLDVAWIDDGTKVFMAGC---DKTVKCWDLASNQSMQ---V  113 (356)
Q Consensus        45 ~~l~~~~----~dg~i~vw~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~---~  113 (356)
                      +.+++|+    .++.|.+|+++.....+ ......+...+..++|+|+|+ |++++.   ++.|.+|++.+++...   .
T Consensus         3 ~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~   81 (347)
T 3hfq_A            3 ERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV   81 (347)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee
Confidence            4566664    35678888887532222 223344567788899999998 665554   6899999998776433   3


Q ss_pred             cccCCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCC-C--ceEEEeCC------------CeeEEEecCCCeEEEEe
Q psy12911        114 AQHDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTP-Q--PIMTINLP------------ERCYCADVDYPLAVVGT  177 (356)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~--~~~~~~~~------------~~~~~~~~~~~~~~~~~  177 (356)
                      ..+...+..++|+  |++++|++++ .++.|.+||+... .  .+..+...            ...+.+++++..+++..
T Consensus        82 ~~~~~~p~~~a~s--pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~  159 (347)
T 3hfq_A           82 VAPGTPPAYVAVD--EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL  159 (347)
T ss_dssp             EEESCCCSEEEEE--TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred             ecCCCCCEEEEEC--CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence            4577889999999  9999888888 6799999999632 2  33333322            12467778888555556


Q ss_pred             cCCeEEEEeCC-CCcccc-ccccCcccccceEEEeecCCCCCCCeEEE-eecCCeEEEEEeCCCCCCC--cceeeeecCC
Q psy12911        178 AGRGIVLYQLE-GKPQEF-KKTESPLKYQNRCIAIFRDKKKQPAGYGL-GSVEGRVAIQYVNPANPKD--NFTFKCHRSN  252 (356)
Q Consensus       178 ~d~~i~i~d~~-~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~dg~i~i~~~~~~~~~~--~~~~~~~~~~  252 (356)
                      .++.|.+|++. ++.... ..........+..++|+|+    +.++++ ...++.+.+|+++....+.  ...+..... 
T Consensus       160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd----g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-  234 (347)
T 3hfq_A          160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD----GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA-  234 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTT----SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT-
T ss_pred             CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCC----CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC-
Confidence            68899999998 332211 1111122345678999999    665544 5678999999998533221  111211111 


Q ss_pred             CCCCCcccccceEEEEEeCCCCEE-EEEcCCCeEEEEEcCc---ceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        253 GGAGGVQDIYAVNGIVFHPVHGTL-ATVGSEGTFSFWDKDA---RTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       253 ~~~~~~~~~~~i~~i~~sp~~~~l-~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                          +......+..++|+|||++| ++...++.|.+|++..   .+.+..+..+...+..++|+|||++|++++.++
T Consensus       235 ----~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  307 (347)
T 3hfq_A          235 ----DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT  307 (347)
T ss_dssp             ----TCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT
T ss_pred             ----CCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC
Confidence                00001158899999999977 4556689999999873   244555555666789999999999999987653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=2.2e-24  Score=180.68  Aligned_cols=242  Identities=9%  Similarity=0.006  Sum_probs=180.4

Q ss_pred             CeeEEEecCCCCCceEE-EEEeCCCeEEEEeccCCCceeeeeec-cC----CcceeEEEEccCCCeEEEEc---------
Q psy12911         31 SISCMAFSPSTLPQYFL-IAGSWDNNVRCWEVEPNGKTIPKSMQ-GM----SEPVLDVAWIDDGTKVFMAG---------   95 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~-~~----~~~v~~~~~s~~~~~l~~~~---------   95 (356)
                      .+.+++|+|++   +++ +++..++.|.+||+.++.  ....+. ++    ...+..++|+|+|++|+++.         
T Consensus        35 ~~~~~~~s~dg---~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  109 (337)
T 1pby_B           35 TPMVPMVAPGG---RIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH  109 (337)
T ss_dssp             CCCCEEECTTS---SEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CccceEEcCCC---CEEEEEeCCCCeEEEEECCCCC--eEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccc
Confidence            48899999998   655 555667899999998733  223332 11    23678999999999998886         


Q ss_pred             ---CCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--eeEEEecCC
Q psy12911         96 ---CDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--RCYCADVDY  170 (356)
Q Consensus        96 ---~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~  170 (356)
                         .++.|.+||+.+++..........+.+++|+  |++++|+++  ++.|.+||+.+++.+..+..+.  ....+++++
T Consensus       110 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg  185 (337)
T 1pby_B          110 FEVQPTRVALYDAETLSRRKAFEAPRQITMLAWA--RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDV  185 (337)
T ss_dssp             EEECCCEEEEEETTTTEEEEEEECCSSCCCEEEC--TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBC
T ss_pred             ccccCceEEEEECCCCcEEEEEeCCCCcceeEEC--CCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCc
Confidence               5799999999998877655556678899999  999988887  6889999999998887777554  344556666


Q ss_pred             CeEEEEecC-C-----------------------eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec
Q psy12911        171 PLAVVGTAG-R-----------------------GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV  226 (356)
Q Consensus       171 ~~~~~~~~d-~-----------------------~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  226 (356)
                      ..+++.... +                       .|.+||+.++... ......+...+..++++|+    +..++++  
T Consensus       186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~d----g~~l~~~--  258 (337)
T 1pby_B          186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPA----KTRAFGA--  258 (337)
T ss_dssp             CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTT----SSEEEEE--
T ss_pred             cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCC----CCEEEEe--
Confidence            555443322 2                       5789999887643 2222234456778999999    7777777  


Q ss_pred             CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC
Q psy12911        227 EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM  302 (356)
Q Consensus       227 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  302 (356)
                      ++.|.+||+...  +.+..+..+.            .+.+++|+|+|++|++++.++.|++||+.+++.+..+..+
T Consensus       259 ~~~v~~~d~~~~--~~~~~~~~~~------------~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          259 YNVLESFDLEKN--ASIKRVPLPH------------SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             ESEEEEEETTTT--EEEEEEECSS------------CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCeEEEEECCCC--cCcceecCCC------------ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            799999998764  3344444332            5789999999999999999999999999999887766544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=1.8e-24  Score=199.17  Aligned_cols=270  Identities=7%  Similarity=0.011  Sum_probs=194.4

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCC-----------------cceeEEEEccCCCeEEE
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS-----------------EPVLDVAWIDDGTKVFM   93 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-----------------~~v~~~~~s~~~~~l~~   93 (356)
                      .+..+.|.  +   +.+++++.|+ | +||+.++.. ....+..|.                 ..|.+++|+|| +.++.
T Consensus        27 ~~~~~~w~--g---~~~~~~~~~~-i-~~d~~tg~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~   97 (706)
T 2z3z_A           27 YVVGLQWM--G---DNYVFIEGDD-L-VFNKANGKS-AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVL   97 (706)
T ss_dssp             -CTTCEEE--T---TEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEE
T ss_pred             cCCCCcCc--C---CeEEEEeCCc-E-EEECCCCcE-eeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEE
Confidence            45668888  4   5667777777 8 999988433 001122222                 46999999999 66666


Q ss_pred             EcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-----CCceEEEeCCC-------
Q psy12911         94 AGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-----PQPIMTINLPE-------  161 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~-------  161 (356)
                      +. ++.|++||+.+++...+..+...+.+++|+  |||+.|+++ .++.|++||+.+     ++.......+.       
T Consensus        98 ~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~  173 (706)
T 2z3z_A           98 FT-QGGLVGFDMLARKVTYLFDTNEETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ  173 (706)
T ss_dssp             EE-TTEEEEEETTTTEEEEEECCTTCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred             EE-CCEEEEEECCCCceEEccCCcccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence            54 599999999999887777788889999999  999999985 689999999998     77655433222       


Q ss_pred             ----------eeEEEecCCCeEEEEe---------------------------------cCCeEEEEeCCCCcccccccc
Q psy12911        162 ----------RCYCADVDYPLAVVGT---------------------------------AGRGIVLYQLEGKPQEFKKTE  198 (356)
Q Consensus       162 ----------~~~~~~~~~~~~~~~~---------------------------------~d~~i~i~d~~~~~~~~~~~~  198 (356)
                                ..+.+++++..|++++                                 .+..|.+||+.++........
T Consensus       174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~  253 (706)
T 2z3z_A          174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG  253 (706)
T ss_dssp             CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred             chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence                      4567888889888887                                 457899999988764333322


Q ss_pred             CcccccceEEEeecCCCCCCCeEEEeecCC-----eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeC--
Q psy12911        199 SPLKYQNRCIAIFRDKKKQPAGYGLGSVEG-----RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP--  271 (356)
Q Consensus       199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp--  271 (356)
                      ..+...+..++|+|+    +..+++++.++     .|++||....  +....+........      ...+..++|+|  
T Consensus       254 ~~~~~~~~~~~~spd----g~~l~~~~~~~~~~~~~v~~~d~~~g--~~~~~~~~~~~~~~------~~~~~~~~~sp~~  321 (706)
T 2z3z_A          254 EPKEKFLTNLSWSPD----ENILYVAEVNRAQNECKVNAYDAETG--RFVRTLFVETDKHY------VEPLHPLTFLPGS  321 (706)
T ss_dssp             SCTTCEEEEEEECTT----SSEEEEEEECTTSCEEEEEEEETTTC--CEEEEEEEEECSSC------CCCCSCCEECTTC
T ss_pred             CCCceeEeeEEEECC----CCEEEEEEeCCCCCeeEEEEEECCCC--ceeeEEEEccCCCe------ECccCCceeecCC
Confidence            245567899999999    78888887775     8889988765  22223322111000      00246789999  


Q ss_pred             CCCEEEEEcCCCeEEEEEcC-cceecCCCCCCccceEE-EEECCCCCEEEEEeccC
Q psy12911        272 VHGTLATVGSEGTFSFWDKD-ARTKLKPSEAMDMSIST-CALNHNGQIFAYAVSYD  325 (356)
Q Consensus       272 ~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~s~~d  325 (356)
                      ||++|++++.||.++||++. +++.+..+..+...+.. ++|+|||+.|+.++.++
T Consensus       322 dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~  377 (706)
T 2z3z_A          322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA  377 (706)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred             CCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence            99999999999999999876 56667777777777877 89999999998877654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=6.5e-23  Score=171.44  Aligned_cols=262  Identities=10%  Similarity=-0.014  Sum_probs=177.2

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeC-CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSW-DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      ..+....+..+...+ +++|+|++   ++|++++. ++.|.+||..++. .....+..+..+..+++|+|+|++|+++..
T Consensus        29 ~~~~~~~~~~~~~~~-~~~~s~dg---~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  103 (331)
T 3u4y_A           29 TLEILNQITLGYDFV-DTAITSDC---SNVVVTSDFCQTLVQIETQLEP-PKVVAIQEGQSSMADVDITPDDQFAVTVTG  103 (331)
T ss_dssp             TCCEEEEEECCCCEE-EEEECSSS---CEEEEEESTTCEEEEEECSSSS-CEEEEEEECSSCCCCEEECTTSSEEEECCC
T ss_pred             ccceeeeEEccCCcc-eEEEcCCC---CEEEEEeCCCCeEEEEECCCCc-eeEEecccCCCCccceEECCCCCEEEEecC
Confidence            344455555566677 99999999   76666655 8899999998733 224566666666666999999999996555


Q ss_pred             CC---eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEE-ECCCe-EEEEeCCCCCceE-----EEeCCC--eeE
Q psy12911         97 DK---TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTG-SWDKT-LKFWDLRTPQPIM-----TINLPE--RCY  164 (356)
Q Consensus        97 dg---~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~~~-----~~~~~~--~~~  164 (356)
                      ++   .|.+||+.+++.+..........+++|+  |++++++++ ..++. |.+|++.....+.     .+....  ..+
T Consensus       104 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~  181 (331)
T 3u4y_A          104 LNHPFNMQSYSFLKNKFISTIPIPYDAVGIAIS--PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNI  181 (331)
T ss_dssp             SSSSCEEEEEETTTTEEEEEEECCTTEEEEEEC--TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEE
T ss_pred             CCCcccEEEEECCCCCeEEEEECCCCccceEEC--CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccce
Confidence            53   9999999999887766566678999999  999865554 55578 9999998654432     222222  356


Q ss_pred             EEecCCCeEEEE-ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe-ecCCeEEEEEeCCCCCCC
Q psy12911        165 CADVDYPLAVVG-TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG-SVEGRVAIQYVNPANPKD  242 (356)
Q Consensus       165 ~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~~~~  242 (356)
                      .+++++..++++ ..++.|.+||+.++..............+..++|+|+    +..++++ ..++.|.+||........
T Consensus       182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spd----g~~l~v~~~~~~~i~~~d~~~~~~~~  257 (331)
T 3u4y_A          182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRD----GSTVYVLTESTVDVFNFNQLSGTLSF  257 (331)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTT----SSEEEEECSSEEEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCC----CCEEEEEEcCCCEEEEEECCCCceee
Confidence            677777766555 4689999999987654111111123466789999999    6755554 457889999987653222


Q ss_pred             cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE-cCCCeEEEEEcCcce
Q psy12911        243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV-GSEGTFSFWDKDART  294 (356)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~-~~dg~i~iwd~~~~~  294 (356)
                      +..+..+....    .........++|+|+|++|+++ ..++.|.+||+....
T Consensus       258 ~~~~~~~~~~~----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          258 VKSFGHGLLID----PRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEEEECCCCCC----CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             ecccccccccC----CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            33222220000    0011123568999999987654 556799999998654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=5.5e-23  Score=196.64  Aligned_cols=276  Identities=10%  Similarity=-0.025  Sum_probs=203.0

Q ss_pred             CCCCeeEEEec-CCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCc-ceeEEEEccCCCeEEEEcCCCeEE-EEE
Q psy12911         28 PEDSISCMAFS-PSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE-PVLDVAWIDDGTKVFMAGCDKTVK-CWD  104 (356)
Q Consensus        28 h~~~V~~~~~~-~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~-vwd  104 (356)
                      |...|.+++|+ |+|   ++|++++ ++.|.+|++..+ . . ..+..|.. .+..++|+ ||+.|+.++.++.+. +|+
T Consensus       294 ~~~~v~~~~~S~pdG---~~la~~~-~~~i~~~~~~~~-~-~-~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d  365 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDG---DLIAFVS-RGQAFIQDVSGT-Y-V-LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYD  365 (1045)
T ss_dssp             ECGGGGEEEEEECGG---GCEEEEE-TTEEEEECTTSS-B-E-EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEE
T ss_pred             cccccceeeecCCCC---CEEEEEE-cCEEEEEcCCCC-c-e-EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEE
Confidence            44579999999 999   8888888 789999998762 2 2 34566777 89999999 999999998888899 999


Q ss_pred             cCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEecCCCeEEEEecC--
Q psy12911        105 LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCADVDYPLAVVGTAG--  179 (356)
Q Consensus       105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d--  179 (356)
                      +.+++...+..|...+..++|+  |+|++|++++.++.|++||+.+++....+..+.   ..+.+++++..+++++.+  
T Consensus       366 ~~~~~~~~l~~~~~~~~~~~~S--pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~  443 (1045)
T 1k32_A          366 YRTGKAEKFEENLGNVFAMGVD--RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH  443 (1045)
T ss_dssp             TTTCCEEECCCCCCSEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECS
T ss_pred             CCCCCceEecCCccceeeeEEC--CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcc
Confidence            9988877766888899999999  999999999999999999999998877775443   456778888888887664  


Q ss_pred             --------CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC-----------
Q psy12911        180 --------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-----------  240 (356)
Q Consensus       180 --------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-----------  240 (356)
                              +.|++||+.++..  .. ...+...+..++|+|+    +..++.++.++...+|+......           
T Consensus       444 ~~~~~~~~~~i~l~d~~~g~~--~~-l~~~~~~~~~~~~spd----G~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (1045)
T 1k32_A          444 GETDGYVMQAIHVYDMEGRKI--FA-ATTENSHDYAPAFDAD----SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI  516 (1045)
T ss_dssp             STTCSCCEEEEEEEETTTTEE--EE-CSCSSSBEEEEEECTT----SCEEEEEESCCCCCEECSSSSCEECCSCBEEEEE
T ss_pred             ccccCCCCCeEEEEECCCCcE--EE-eeCCCcccCCceEcCC----CCEEEEEecccCCcCcchhccccccccCceeEEE
Confidence                    4999999988652  21 2234556788999999    78898888877766665422110           


Q ss_pred             -------CC--c-----------ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEE-------------EcCCCeEEE
Q psy12911        241 -------KD--N-----------FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLAT-------------VGSEGTFSF  287 (356)
Q Consensus       241 -------~~--~-----------~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s-------------~~~dg~i~i  287 (356)
                             ..  .           ..+.+... ....-..+...+..++++|||.++++             ......|.+
T Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~  595 (1045)
T 1k32_A          517 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK-RSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK  595 (1045)
T ss_dssp             ESSTTCCCGGGCCCGGGSCCCCCCCCTTGGG-GCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEE
T ss_pred             EeCCCCCCccccCcCccccccccccccCHhH-ceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEE
Confidence                   00  0           00000000 00000001236889999999987775             123557899


Q ss_pred             EEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        288 WDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       288 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ||+.+++... +.   ..+..++|||||++|++++.+.
T Consensus       596 ~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~~  629 (1045)
T 1k32_A          596 YDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDDG  629 (1045)
T ss_dssp             EETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETTS
T ss_pred             EECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCCc
Confidence            9998876432 22   6688999999999999998653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=8.2e-23  Score=167.74  Aligned_cols=237  Identities=11%  Similarity=0.079  Sum_probs=167.4

Q ss_pred             eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccC-CCceeeeeeccC-CcceeEEEEccCCCeEEEEcC--C
Q psy12911         22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEP-NGKTIPKSMQGM-SEPVLDVAWIDDGTKVFMAGC--D   97 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~--d   97 (356)
                      ...+..|...|.+++|+|++   ++|++++ ++.|++||+.+ +...  .....+ ...+.+++|+|++++|++++.  +
T Consensus        34 ~~~~~~~~~~v~~~~~spdg---~~l~~~~-~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  107 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWSPDG---KYLLLNS-EGLLYRLSLAGDPSPE--KVDTGFATICNNDHGISPDGALYAISDKVEF  107 (297)
T ss_dssp             EEEEEEESSCCEEEEECTTS---SEEEEEE-TTEEEEEESSSCCSCE--ECCCTTCCCBCSCCEECTTSSEEEEEECTTT
T ss_pred             eeeeccCCcceEeeEECCCC---CEEEEEc-CCeEEEEeCCCCCCce--EeccccccccccceEECCCCCEEEEEEeCCC
Confidence            33455688999999999999   8999887 78999999987 4322  333344 478899999999999999883  3


Q ss_pred             --CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEE-EEECCCeEEEEeCCC-CCceEEEeC-CC--eeEEEecCC
Q psy12911         98 --KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLM-TGSWDKTLKFWDLRT-PQPIMTINL-PE--RCYCADVDY  170 (356)
Q Consensus        98 --g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~~~-~~--~~~~~~~~~  170 (356)
                        ..|.+|++.+++...+..+ ..+..++|+  |+++.|+ +++.++.+++|++.. ......+.. ..  ..+.+++++
T Consensus       108 ~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~s--pdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  184 (297)
T 2ojh_A          108 GKSAIYLLPSTGGTPRLMTKN-LPSYWHGWS--PDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG  184 (297)
T ss_dssp             SSCEEEEEETTCCCCEECCSS-SSEEEEEEC--TTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS
T ss_pred             CcceEEEEECCCCceEEeecC-CCccceEEC--CCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCC
Confidence              4555555566654444433 458999999  9999877 778899999998643 223333333 22  345566677


Q ss_pred             CeEEEEe-cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-----------CeEEEEEeCCC
Q psy12911        171 PLAVVGT-AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-----------GRVAIQYVNPA  238 (356)
Q Consensus       171 ~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-----------g~i~i~~~~~~  238 (356)
                      ..+++++ .++.+.+|++........... .+...+..++|+|+    +..+++++.+           +.|++|+++..
T Consensus       185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~d----g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          185 RWIYFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPS----GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTT----SSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             CEEEEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCC----CCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence            7777665 588999998863322222222 34567888999999    7888888765           56899998766


Q ss_pred             CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC
Q psy12911        239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG  283 (356)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg  283 (356)
                      ....+..+..|..           .+..++|+|++++|++++.+.
T Consensus       260 ~~~~~~~~~~~~~-----------~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          260 NVETLFDLFGGQG-----------TMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SCEEEEEEEESTT-----------TSCSCCBCTTSSEEEEEEECC
T ss_pred             CceeeeccCCCCc-----------ccccceECCCCCEEEEEEecc
Confidence            4333444556655           788999999999998887653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=2.3e-22  Score=169.27  Aligned_cols=249  Identities=11%  Similarity=0.090  Sum_probs=169.2

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeC---CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-CCCeEEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSW---DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKC  102 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v  102 (356)
                      .+...+..++|+|+|   + |++++.   ++.|.+|++..+.......+..+...+..++|+|+|++|++++ .++.|.+
T Consensus        37 ~~~~~p~~~a~spdg---~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v  112 (347)
T 3hfq_A           37 AATQNPTYLALSAKD---C-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEV  112 (347)
T ss_dssp             EECSCCCCEEECTTC---E-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eccCCcceEEEccCC---e-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEE
Confidence            355677889999999   7 555544   6899999997643344455556778899999999999888887 6899999


Q ss_pred             EEcC-CCceee--eccc----------CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC-CCCceE--EEeCC----Ce
Q psy12911        103 WDLA-SNQSMQ--VAQH----------DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR-TPQPIM--TINLP----ER  162 (356)
Q Consensus       103 wd~~-~~~~~~--~~~~----------~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~--~~~~~----~~  162 (356)
                      |++. .+....  ...+          ...+.+++|+  |+++++++...++.|++||+. +++...  .+..+    ..
T Consensus       113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s--pdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~  190 (347)
T 3hfq_A          113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT--PDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR  190 (347)
T ss_dssp             EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC--TTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred             EEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC--CCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence            9996 333222  1111          2348889999  999966666678899999998 454322  22221    13


Q ss_pred             eEEEecCCCeEEE-EecCCeEEEEeCCC--Cccccc-ccc-Ccc----cccceEEEeecCCCCCCCeE-EEeecCCeEEE
Q psy12911        163 CYCADVDYPLAVV-GTAGRGIVLYQLEG--KPQEFK-KTE-SPL----KYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAI  232 (356)
Q Consensus       163 ~~~~~~~~~~~~~-~~~d~~i~i~d~~~--~~~~~~-~~~-~~~----~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i  232 (356)
                      .+.+++++..+++ ...++.|.+|++..  +..... ... .+.    ...+..++|+|+    +.++ ++...++.|.+
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd----G~~l~v~~~~~~~v~v  266 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD----GHFLYVSNRGYNTLAV  266 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT----SCEEEEEEETTTEEEE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC----CCEEEEEeCCCCEEEE
Confidence            4677788886665 56689999999875  221111 111 011    134788999999    6766 55566899999


Q ss_pred             EEeCCC-CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC-CCeEEEEE--cCcceec
Q psy12911        233 QYVNPA-NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS-EGTFSFWD--KDARTKL  296 (356)
Q Consensus       233 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-dg~i~iwd--~~~~~~~  296 (356)
                      |+++.. ....+..+..+..           .+..++|+|||++|++++. ++.|.+|+  ..+++..
T Consensus       267 ~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          267 FAVTADGHLTLIQQISTEGD-----------FPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEECGGGCEEEEEEEECSSS-----------CCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEECCCCcEEEeEEEecCCC-----------CcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            999732 2223333333332           5789999999998887765 48999994  4555543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=1.6e-21  Score=165.07  Aligned_cols=262  Identities=11%  Similarity=0.065  Sum_probs=173.6

Q ss_pred             eEEEEEe----CCCeEEEEeccCCC--ceeeeeeccCCcceeEEEEccCCCeEEEEcCC----CeEEEEEcCC--Cceee
Q psy12911         45 YFLIAGS----WDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD----KTVKCWDLAS--NQSMQ  112 (356)
Q Consensus        45 ~~l~~~~----~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~--~~~~~  112 (356)
                      .++++|+    .++.|.+|+++...  .......  +...+..++|+|+|++|++++.+    +.|.+|++..  ++...
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~   91 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL   91 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence            5677775    35689999886422  2222223  67788899999999999998875    7999998875  44433


Q ss_pred             ---ecccCCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCCCceE----EEeCCC-------------eeEEEecCCC
Q psy12911        113 ---VAQHDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTPQPIM----TINLPE-------------RCYCADVDYP  171 (356)
Q Consensus       113 ---~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~----~~~~~~-------------~~~~~~~~~~  171 (356)
                         ...+......+++    ++++|++++ .++.|.+|++.....+.    .+....             ..+.+++++.
T Consensus        92 ~~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~  167 (361)
T 3scy_A           92 LNTQKTMGADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK  167 (361)
T ss_dssp             EEEEECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred             eeEeccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence               2224445555654    567676666 57899999997543221    111111             3467888888


Q ss_pred             eEEEEe-cCCeEEEEeCCCCcc----c-c------ccccCcccccceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCC
Q psy12911        172 LAVVGT-AGRGIVLYQLEGKPQ----E-F------KKTESPLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPA  238 (356)
Q Consensus       172 ~~~~~~-~d~~i~i~d~~~~~~----~-~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~  238 (356)
                      .++++. .++.|.+|++.....    . +      ..........+..++|+|+    +..+++++ .++.|.+|+++..
T Consensus       168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd----g~~l~v~~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD----GKFAYLINEIGGTVIAFRYADG  243 (361)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT----SSEEEEEETTTCEEEEEEEETT
T ss_pred             EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC----CCEEEEEcCCCCeEEEEEecCC
Confidence            666655 589999999876542    1 1      1122233456789999999    77776666 6899999999754


Q ss_pred             CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC--CCeEEEEEcC--cce--ecCCCCCCccceEEEEEC
Q psy12911        239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS--EGTFSFWDKD--ART--KLKPSEAMDMSISTCALN  312 (356)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~--dg~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~s  312 (356)
                      ....+..+.....        +......++|+|||++|+++..  ++.|.+|++.  +++  .+..+.. ...+.+++|+
T Consensus       244 ~~~~~~~~~~~~~--------~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s  314 (361)
T 3scy_A          244 MLDEIQTVAADTV--------NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT  314 (361)
T ss_dssp             EEEEEEEEESCSS--------CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred             ceEEeEEEecCCC--------CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence            2222222221111        0014679999999998876655  4899999985  344  3444443 4567899999


Q ss_pred             CCCCEEEEEeccC
Q psy12911        313 HNGQIFAYAVSYD  325 (356)
Q Consensus       313 ~~~~~l~~~s~~d  325 (356)
                      |||++|++++.++
T Consensus       315 pdg~~l~~~~~~~  327 (361)
T 3scy_A          315 PNGKYLLVACRDT  327 (361)
T ss_dssp             TTSCEEEEEETTT
T ss_pred             CCCCEEEEEECCC
Confidence            9999999988543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=1.2e-20  Score=159.67  Aligned_cols=262  Identities=9%  Similarity=0.049  Sum_probs=176.7

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCC----CeEEEEeccCC-C-ceeeeeeccCCcceeEEEEccCCCeEEEEc-CCCeE
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWD----NNVRCWEVEPN-G-KTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTV  100 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~-~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i  100 (356)
                      +...+..++|+|++   ++|++++.+    +.|.+|+++.. + ...+.....+......+++  ++++|++++ .++.|
T Consensus        48 ~~~~p~~l~~spdg---~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v  122 (361)
T 3scy_A           48 EVANPSYLIPSADG---KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSI  122 (361)
T ss_dssp             ECSCCCSEEECTTS---SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred             cCCCCceEEECCCC---CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence            67778899999999   999998875    79999999763 2 2233344445566777887  788777766 58899


Q ss_pred             EEEEcCCCceee-e---cc-----------cCCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCCCc------e----
Q psy12911        101 KCWDLASNQSMQ-V---AQ-----------HDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTPQP------I----  154 (356)
Q Consensus       101 ~vwd~~~~~~~~-~---~~-----------~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------~----  154 (356)
                      .+|++.....+. .   ..           +...+.+++|+  |+++++++++ .++.|.+|++.....      +    
T Consensus       123 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          123 TVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             EEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             EEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            999997543321 1   11           12345789999  9999766655 478999999875442      2    


Q ss_pred             --EEEe--CCC--eeEEEecCCCeEEEEe-cCCeEEEEeCCCCcccccc-c--cCcccccceEEEeecCCCCCCCeEEEe
Q psy12911        155 --MTIN--LPE--RCYCADVDYPLAVVGT-AGRGIVLYQLEGKPQEFKK-T--ESPLKYQNRCIAIFRDKKKQPAGYGLG  224 (356)
Q Consensus       155 --~~~~--~~~--~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~~~~~~~  224 (356)
                        ....  ...  ..+.+++++..++++. .++.|.+|++.++...... .  ..........++|+|+    +++++++
T Consensus       201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd----g~~l~v~  276 (361)
T 3scy_A          201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD----GKYLYAS  276 (361)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT----SSEEEEE
T ss_pred             cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC----CCEEEEE
Confidence              1222  222  3567778888787776 6899999999865321111 1  1112234579999999    7777666


Q ss_pred             ec--CCeEEEEEeCCCCCC--CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc-CCCeEEEEE--cCcceecC
Q psy12911        225 SV--EGRVAIQYVNPANPK--DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWD--KDARTKLK  297 (356)
Q Consensus       225 ~~--dg~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd--~~~~~~~~  297 (356)
                      ..  ++.+.+|+++.....  .+..+.. ..           .+..++|+|+|++|++++ .++.|.+|+  ..+++...
T Consensus       277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~-----------~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GI-----------HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             ECSSSCEEEEEEECTTTCCEEEEEEEEC-SS-----------CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CCCCCCEEEEEEEcCCCCcEEEeeEecC-CC-----------CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence            65  489999999743322  2222332 11           578999999999888876 678999965  55676554


Q ss_pred             CCC-CCccceEEEEEC
Q psy12911        298 PSE-AMDMSISTCALN  312 (356)
Q Consensus       298 ~~~-~~~~~v~~~~~s  312 (356)
                      ... .+...+.|++|.
T Consensus       345 ~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          345 IKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             CSCCEECSSEEEEEEE
T ss_pred             cceeeeCCCCeEEEEc
Confidence            432 234568888885

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.90  E-value=5.7e-22  Score=169.42  Aligned_cols=287  Identities=11%  Similarity=0.078  Sum_probs=188.1

Q ss_pred             CCCCceEEeCCCCCCeeE-----EEecCCCCCceEEEEEeC-CC--eEEEEeccCCCceeeeeeccCCcceeEEEEccCC
Q psy12911         17 NPNKDFEVVSPPEDSISC-----MAFSPSTLPQYFLIAGSW-DN--NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG   88 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~-----~~~~~~~~~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~   88 (356)
                      ..-.....+..|......     .+|+|||   ++|+.++. ++  .|.+||+.+  ........++...+..++|+|||
T Consensus        18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg---~~l~~~~~~~g~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~spdg   92 (388)
T 3pe7_A           18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDG---SKLLFGGAFDGPWNYYLLDLNT--QVATQLTEGRGDNTFGGFLSPDD   92 (388)
T ss_dssp             TTCCEEEECSCTTSCEECCCTTSCCBCTTS---CEEEEEECTTSSCEEEEEETTT--CEEEECCCSSCBCSSSCEECTTS
T ss_pred             CCCcceEEecCCcccccchhhcCccCCCCC---CEEEEEEcCCCCceEEEEeCCC--CceEEeeeCCCCCccceEEcCCC
Confidence            334456667777766666     8999999   88888877 67  477778876  33334455566666678899999


Q ss_pred             CeEEEEcCCCeEEEEEcCCCceeee-cccCCCeeEEEEEeCCCCCeEEEE----------------------ECCCeEEE
Q psy12911         89 TKVFMAGCDKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTG----------------------SWDKTLKF  145 (356)
Q Consensus        89 ~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~----------------------~~dg~i~i  145 (356)
                      +.|+.++.++.|++||+.+++...+ ..+...+....|...+++.+++..                      ..+..|.+
T Consensus        93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  172 (388)
T 3pe7_A           93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR  172 (388)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence            9999999999999999999887653 334444544554323899888743                      24468999


Q ss_pred             EeCCCCCceEEEeCCC--eeEEEec-CCCeEEEEecC------CeEEEEeCCCCccccccccCccc-ccceEEEeecCCC
Q psy12911        146 WDLRTPQPIMTINLPE--RCYCADV-DYPLAVVGTAG------RGIVLYQLEGKPQEFKKTESPLK-YQNRCIAIFRDKK  215 (356)
Q Consensus       146 wd~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~  215 (356)
                      ||+.+++.........  ....+++ ++..++....+      ..|.++|..+....  .+..... ..+...+|+|+  
T Consensus       173 ~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~spd--  248 (388)
T 3pe7_A          173 VDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR--KVKTHAEGESCTHEFWVPD--  248 (388)
T ss_dssp             EETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE--ESCCCCTTEEEEEEEECTT--
T ss_pred             EECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE--EeeeCCCCcccccceECCC--
Confidence            9999987655554443  3456677 77777766653      37888888765322  1211111 34677899999  


Q ss_pred             CCCCeEEEeec-CC----eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE---------cC
Q psy12911        216 KQPAGYGLGSV-EG----RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV---------GS  281 (356)
Q Consensus       216 ~~~~~~~~~~~-dg----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~---------~~  281 (356)
                        +..|+..+. ++    .|++||+.......+..+..+...        ......++|+|||+.|+..         ..
T Consensus       249 --g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~--------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  318 (388)
T 3pe7_A          249 --GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHL--------MSNYDGSLMVGDGSDAPVDVQDDSGYKIEN  318 (388)
T ss_dssp             --SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEE--------EECTTSSEEEEEECCC------------CC
T ss_pred             --CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceee--------eecCCCCeEccCCCcceeEeeeccccccCC
Confidence              666655443 22    388888876543233333221100        0001224799999888754         45


Q ss_pred             CCeEEEEEcCcceecCCCCCCcc-----------ceEEEEECCCCCEEEEEec
Q psy12911        282 EGTFSFWDKDARTKLKPSEAMDM-----------SISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~s~  323 (356)
                      +..|++||+.+++. ..+..+..           .+.+++|+|||+.|+.++.
T Consensus       319 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          319 DPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             CCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             CCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence            67899999998765 33433444           5788999999999999874

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=3.3e-22  Score=184.46  Aligned_cols=263  Identities=9%  Similarity=-0.008  Sum_probs=183.2

Q ss_pred             EEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCc---ceeEEEEccCCCeEEEEcC---------CCeEE
Q psy12911         34 CMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE---PVLDVAWIDDGTKVFMAGC---------DKTVK  101 (356)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~---------dg~i~  101 (356)
                      +++|+|++   ++++++ .|+.|++||+.++.  ....+..|..   .+.+++|||||++|++++.         ++.|+
T Consensus        20 ~~~~s~dg---~~~~~~-~d~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISGQ---EYLHQS-ADNNIVLYNIETGQ--SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSSS---EEEEEC-TTSCEEEEESSSCC--EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCCC---eEEEEc-CCCCEEEEEcCCCc--EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            78999998   776665 59999999998843  2234443433   3899999999999998876         78999


Q ss_pred             EEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--------------------
Q psy12911        102 CWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--------------------  161 (356)
Q Consensus       102 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------------  161 (356)
                      +||+.+++.+........+..++|+  |||+.|+++. ++.|++||+.+++..+......                    
T Consensus        94 ~~d~~~g~~~~~~~l~~~~~~~~~S--PDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A           94 IYDLSNGEFVRGNELPRPIQYLCWS--PVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             EEETTTTEECCSSCCCSSBCCEEEC--SSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred             EEECCCCccccceecCcccccceEC--CCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence            9999999873212223568999999  9999999986 7899999998887654322111                    


Q ss_pred             -eeEEEecCCCeEEEEecCC----------------------------------eEEEEeCCCCccc--cccc----cCc
Q psy12911        162 -RCYCADVDYPLAVVGTAGR----------------------------------GIVLYQLEGKPQE--FKKT----ESP  200 (356)
Q Consensus       162 -~~~~~~~~~~~~~~~~~d~----------------------------------~i~i~d~~~~~~~--~~~~----~~~  200 (356)
                       ..+.+++++..|++++.|.                                  .|++||+.++...  ....    ...
T Consensus       171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  250 (719)
T 1z68_A          171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS  250 (719)
T ss_dssp             SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred             cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence             3577888899998877542                                  7889999886531  1110    113


Q ss_pred             ccccceEEEeecCCCCCCCeEEEeecCC----eEEEEE----eCCCCCCCccee----eeecCCCCCCCcccccceE---
Q psy12911        201 LKYQNRCIAIFRDKKKQPAGYGLGSVEG----RVAIQY----VNPANPKDNFTF----KCHRSNGGAGGVQDIYAVN---  265 (356)
Q Consensus       201 ~~~~i~~~~~~~~~~~~~~~~~~~~~dg----~i~i~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~---  265 (356)
                      +...+..++|+|+    +..+++....+    .|.+||    ....  +....+    ..|..           .+.   
T Consensus       251 ~~~~~~~~~~SpD----~~~~~~~~~~~~~~~~l~~~d~~~~~~~g--~~~~~~~~~~~~~~~-----------~~~~~~  313 (719)
T 1z68_A          251 SDYYFSWLTWVTD----ERVCLQWLKRVQNVSVLSICDFREDWQTW--DCPKTQEHIEESRTG-----------WAGGFF  313 (719)
T ss_dssp             SCEEEEEEEESSS----SEEEEEEEESSTTEEEEEEEEECSSSSSE--ECCGGGEEEEECSSS-----------CSSSSS
T ss_pred             CcceEEEeEEeCC----CeEEEEEeccccCeEEEEEEcccCCCCCC--ceEEEEecccccCCc-----------eEcccc
Confidence            5567899999999    66666644332    377777    4433  333333    23433           454   


Q ss_pred             --EEEEeCCCCEEEE--EcCCC--eEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        266 --GIVFHPVHGTLAT--VGSEG--TFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       266 --~i~~sp~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                        .++|+|||+.|+.  ...+|  .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+
T Consensus       314 ~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~  376 (719)
T 1z68_A          314 VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNE  376 (719)
T ss_dssp             CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred             CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence              7899999985543  44555  57777877665 34455556668888888 88888887765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=2e-21  Score=163.49  Aligned_cols=238  Identities=14%  Similarity=0.055  Sum_probs=169.4

Q ss_pred             EEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCC-cceeEEEEccCCCeEE-EEcCCCeEEEEEcCCCcee
Q psy12911         34 CMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS-EPVLDVAWIDDGTKVF-MAGCDKTVKCWDLASNQSM  111 (356)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~  111 (356)
                      .+++++++   .++++++.++.|.+||+.++  .....+..+. ..+..++|+|++++++ +...++.|.+||+.+++..
T Consensus         4 g~~~~~~~---~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~   78 (349)
T 1jmx_B            4 GPALKAGH---EYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   78 (349)
T ss_dssp             CCCCCTTC---EEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cccccCCC---EEEEEeCCCCeEEEEECCCC--cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence            45678887   89999999999999999873  3334444332 2578999999998665 5556899999999998876


Q ss_pred             eeccc-------CCCeeEEEEEeCCCCCeEEEEECC------------CeEEEEeCCCC---CceEEEeCCCe--eEEEe
Q psy12911        112 QVAQH-------DAPVKTCHWIKAPNYTCLMTGSWD------------KTLKFWDLRTP---QPIMTINLPER--CYCAD  167 (356)
Q Consensus       112 ~~~~~-------~~~v~~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~---~~~~~~~~~~~--~~~~~  167 (356)
                      .....       ...+..++|+  |+++++++++.+            +.|.+||+.++   +.+..+..+..  .+.++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s  156 (349)
T 1jmx_B           79 FHANLSSVPGEVGRSMYSFAIS--PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA  156 (349)
T ss_dssp             EEEESCCSTTEEEECSSCEEEC--TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred             EEEEcccccccccccccceEEC--CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeEC
Confidence            53322       2237889999  999999998865            89999999884   44455555543  34566


Q ss_pred             cCCCeEEEEecCCeEEEEeCCCCccccccccCc-----------------------------------------------
Q psy12911        168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESP-----------------------------------------------  200 (356)
Q Consensus       168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------------------------------------------  200 (356)
                      +++. +++++  +.|.+||+.++..........                                               
T Consensus       157 ~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  233 (349)
T 1jmx_B          157 DDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  233 (349)
T ss_dssp             TTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             CCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence            7777 66654  349999998765322111100                                               


Q ss_pred             -------------------ccccceEEEeec-CCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCccc
Q psy12911        201 -------------------LKYQNRCIAIFR-DKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQD  260 (356)
Q Consensus       201 -------------------~~~~i~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (356)
                                         ....+..++++| +    +..++++  ++.|.+||+...  +.+..+....          
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d----g~~l~~~--~~~v~~~d~~~~--~~~~~~~~~~----------  295 (349)
T 1jmx_B          234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD----PNQIYGV--LNRLAKYDLKQR--KLIKAANLDH----------  295 (349)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECSSC----TTEEEEE--ESEEEEEETTTT--EEEEEEECSS----------
T ss_pred             eEEEEeccCCcEEecccccCCCcceeeEecCCC----CCEEEEE--cCeEEEEECccC--eEEEEEcCCC----------
Confidence                               001234556667 6    6777777  889999998764  3344443322          


Q ss_pred             ccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC
Q psy12911        261 IYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA  301 (356)
Q Consensus       261 ~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  301 (356)
                        .+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus       296 --~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          296 --TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             --CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             --CccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence              477899999999888888899999999999887766543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=4e-21  Score=165.80  Aligned_cols=251  Identities=11%  Similarity=0.077  Sum_probs=163.2

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC-------C--ceee----eeeccCCcceeEEEEccCCCeEE--
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN-------G--KTIP----KSMQGMSEPVLDVAWIDDGTKVF--   92 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-------~--~~~~----~~~~~~~~~v~~~~~s~~~~~l~--   92 (356)
                      +...++.+++++++   .++++++.|+ ++||+....       +  ....    .....+...|.+++|+|++++|+  
T Consensus        35 ~~~~~n~lavs~~~---~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~  110 (434)
T 2oit_A           35 PKERSSLLAVSNKY---GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSAC  110 (434)
T ss_dssp             CCSCCBCEEEETTT---TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred             CCCCccEEEEecCC---CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEE
Confidence            44578999999998   8999999887 899876420       0  0000    01123567899999999999999  


Q ss_pred             --EEcCCCeEEEEEcCCC--------ce---ee-ecccCCCeeEEEEEeCCC-CCeEEEEECCCeEEEEeCCCCCceEEE
Q psy12911         93 --MAGCDKTVKCWDLASN--------QS---MQ-VAQHDAPVKTCHWIKAPN-YTCLMTGSWDKTLKFWDLRTPQPIMTI  157 (356)
Q Consensus        93 --~~~~dg~i~vwd~~~~--------~~---~~-~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~  157 (356)
                        +++.|+.|++||+.++        +.   .. +.+|...|.+++|+  |+ +.+|++++.||+|++||++++..+...
T Consensus       111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~--p~~~~~las~s~Dg~v~iwD~~~~~~~~~~  188 (434)
T 2oit_A          111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWN--PTVPSMVAVCLADGSIAVLQVTETVKVCAT  188 (434)
T ss_dssp             EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEEC--SSCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred             EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEEC--CCCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence              7888999999998764        11   12 55689999999999  76 789999999999999999998665555


Q ss_pred             eCCC---eeEEEecCCCeEEEEecCCeEEEEeCCCCcccccccc----CcccccceEEEeecCCCCCCCeEEE-eecCC-
Q psy12911        158 NLPE---RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE----SPLKYQNRCIAIFRDKKKQPAGYGL-GSVEG-  228 (356)
Q Consensus       158 ~~~~---~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~-~~~dg-  228 (356)
                      ..+.   ..+++++++..+++++.|+.|++||++..........    ..+...+.+++|+++    ..++++ ...+| 
T Consensus       189 ~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~----~~~l~~~~~~dg~  264 (434)
T 2oit_A          189 LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGT----YVFAIVYAAADGT  264 (434)
T ss_dssp             ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEET----TEEEEEEEETTCC
T ss_pred             cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecC----ceEEEEEccCCCc
Confidence            4432   3556667788999999999999999983221111111    112347899999987    444433 33333 


Q ss_pred             -----eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc-CCCeEEEEE
Q psy12911        229 -----RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWD  289 (356)
Q Consensus       229 -----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd  289 (356)
                           .+++|++.....+....+..........+.... +-..+.+-++.+++++++ ..+.|.|..
T Consensus       265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~  330 (434)
T 2oit_A          265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILA  330 (434)
T ss_dssp             SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred             cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEE
Confidence                 388999976533222333333222110000000 222344446666665544 334455554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=6.5e-21  Score=160.64  Aligned_cols=230  Identities=10%  Similarity=-0.026  Sum_probs=173.1

Q ss_pred             CCcceeEEEEccCCCeEEEEcC-------CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEE-EECCCeEEEE
Q psy12911         75 MSEPVLDVAWIDDGTKVFMAGC-------DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMT-GSWDKTLKFW  146 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~iw  146 (356)
                      ....+..++|+|+++++++++.       ++.|.+||..+++.+........+..++|+  ++++.++. ...++.|.+|
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATIN--NTTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEE--TTTTEEEEEETTTTEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEEC--CCCCEEEEEecCCCEEEEE
Confidence            3456789999999998888774       568999999999887755556678899999  99885554 4557999999


Q ss_pred             eCCCCCceEEEeCCC------------eeEEEecCCCeEEEEe--cCCeEEEEeCCCCccccccccCcccccceEEEeec
Q psy12911        147 DLRTPQPIMTINLPE------------RCYCADVDYPLAVVGT--AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFR  212 (356)
Q Consensus       147 d~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  212 (356)
                      |+.+++.+..+..+.            ..+.+++++..++++.  .++.|.+||..+........  .....+..++++|
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~s~  194 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ--NTGKMSTGLALDS  194 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC--CCCTTCCCCEEET
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec--CCCCccceEEECC
Confidence            999999988887643            3467777888777766  47899999998875432221  1334578899999


Q ss_pred             CCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC-CCeEEEEEcC
Q psy12911        213 DKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS-EGTFSFWDKD  291 (356)
Q Consensus       213 ~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-dg~i~iwd~~  291 (356)
                      +    +..++++..++.+.+||....  +....+.....       .....+..++|+|+|+++++++. ++.|.+||+.
T Consensus       195 d----g~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  261 (353)
T 3vgz_A          195 E----GKRLYTTNADGELITIDTADN--KILSRKKLLDD-------GKEHFFINISLDTARQRAFITDSKAAEVLVVDTR  261 (353)
T ss_dssp             T----TTEEEEECTTSEEEEEETTTT--EEEEEEECCCS-------SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred             C----CCEEEEEcCCCeEEEEECCCC--eEEEEEEcCCC-------CCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            9    788999999999999998765  33444332111       00115788999999987766654 5999999999


Q ss_pred             cceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        292 ARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       292 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      +++.+..+....  ...++|+|+|++++++..
T Consensus       262 ~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~  291 (353)
T 3vgz_A          262 NGNILAKVAAPE--SLAVLFNPARNEAYVTHR  291 (353)
T ss_dssp             TCCEEEEEECSS--CCCEEEETTTTEEEEEET
T ss_pred             CCcEEEEEEcCC--CceEEECCCCCEEEEEEC
Confidence            998877665433  257999999998777764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=1.7e-20  Score=161.81  Aligned_cols=158  Identities=18%  Similarity=0.204  Sum_probs=125.1

Q ss_pred             CCCCCeeEEEecCCCCCceEEE----EEeCCCeEEEEeccCC-----Cc----eeeeeeccCCcceeEEEEccC-CCeEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLI----AGSWDNNVRCWEVEPN-----GK----TIPKSMQGMSEPVLDVAWIDD-GTKVF   92 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~----~~~~dg~i~vw~~~~~-----~~----~~~~~~~~~~~~v~~~~~s~~-~~~l~   92 (356)
                      .|...|++++|+|++   ++|+    +|+.|+.|+|||+.+.     ..    .....+.+|...|.+++|+|+ +.+|+
T Consensus        90 ~~~~~v~~l~~spdg---~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la  166 (434)
T 2oit_A           90 PMKFPIHHLALSCDN---LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVA  166 (434)
T ss_dssp             CCSSCEEEEEECTTS---CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEE
T ss_pred             cCCCcccEEEEcCCC---CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEE
Confidence            366789999999999   8998    7889999999998752     01    113556789999999999997 78999


Q ss_pred             EEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--------ee
Q psy12911         93 MAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--------RC  163 (356)
Q Consensus        93 ~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~~  163 (356)
                      +++.||+|++||++++.... ..+|...|.+++|+  |++++|++|+.||.|++||++ ++....+..+.        .+
T Consensus       167 s~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~ws--pdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v  243 (434)
T 2oit_A          167 VCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWS--PKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRV  243 (434)
T ss_dssp             EEETTSCEEEEEESSSEEEEEEECGGGCEEEEEEC--TTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEE
T ss_pred             EEECCCeEEEEEcCCCcceeeccCCCCceeEEEEc--CCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeE
Confidence            99999999999999886654 56788999999999  999999999999999999998 66666554321        45


Q ss_pred             EEEecCCC--eEEE-EecCC------eEEEEeCCCC
Q psy12911        164 YCADVDYP--LAVV-GTAGR------GIVLYQLEGK  190 (356)
Q Consensus       164 ~~~~~~~~--~~~~-~~~d~------~i~i~d~~~~  190 (356)
                      .++.+.++  ++++ ...+|      .+++|+++..
T Consensus       244 ~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          244 LDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            66666554  3322 33333      3899999865

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=6.8e-21  Score=161.27  Aligned_cols=271  Identities=10%  Similarity=0.055  Sum_probs=174.3

Q ss_pred             eEEEEEeCC--CeEEEEeccCCCcee--eeeec-cCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC-CCceeeecccC-
Q psy12911         45 YFLIAGSWD--NNVRCWEVEPNGKTI--PKSMQ-GMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA-SNQSMQVAQHD-  117 (356)
Q Consensus        45 ~~l~~~~~d--g~i~vw~~~~~~~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~-  117 (356)
                      .+|++|+..  +.|.+|+++.....+  ..... .....+..++|+|+|++|++++.+ .|.+|++. +++......+. 
T Consensus         3 ~~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~   81 (365)
T 1jof_A            3 HHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence            457777764  578888875422222  12211 234578899999999999998887 99999997 77765432221 


Q ss_pred             -CCeeEEEEEeCCCCCe--EEEEE-------------CCCeEEEEeCC-CCCceEEEe-----C--CCeeEEEecCCCeE
Q psy12911        118 -APVKTCHWIKAPNYTC--LMTGS-------------WDKTLKFWDLR-TPQPIMTIN-----L--PERCYCADVDYPLA  173 (356)
Q Consensus       118 -~~v~~~~~~~~~~~~~--l~~~~-------------~dg~i~iwd~~-~~~~~~~~~-----~--~~~~~~~~~~~~~~  173 (356)
                       +.+..++|+  |+++.  ++++.             .++.+.+|++. .++....+.     .  +...+.+++++..+
T Consensus        82 ~g~~~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l  159 (365)
T 1jof_A           82 GGHPRANDAD--TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYL  159 (365)
T ss_dssp             CSSGGGGCTT--SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred             CCCCccEEEC--CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEE
Confidence             346678888  99984  44553             68999999997 466544443     1  22356677788877


Q ss_pred             EEEec-CCeEEEEeCC-CCcccc-ccccCc-ccccceEEEeecCCCCCCCeEEEeec-CCeEEEEEeCCCCCCCcc---e
Q psy12911        174 VVGTA-GRGIVLYQLE-GKPQEF-KKTESP-LKYQNRCIAIFRDKKKQPAGYGLGSV-EGRVAIQYVNPANPKDNF---T  245 (356)
Q Consensus       174 ~~~~~-d~~i~i~d~~-~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~-dg~i~i~~~~~~~~~~~~---~  245 (356)
                      +++.. ++.|.+||+. ++.... .....+ +...+..++|+|+    +..+++++. ++.+.+|+++..+.+...   .
T Consensus       160 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd----g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~  235 (365)
T 1jof_A          160 YSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT----GNYLYALMEAGNRICEYVIDPATHMPVYTHHS  235 (365)
T ss_dssp             EEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC----CCEEEEEECCCCeEEEEEEeCCCCcEEEccce
Confidence            77654 6899999998 554321 111111 2456889999999    777777664 789999998754333211   1


Q ss_pred             eeeecCCCCCCCcc----cccceEEEE-EeCCCCEEEEEcCC-C-----eEEEEEcC-cceecC---CCCCCccceEEEE
Q psy12911        246 FKCHRSNGGAGGVQ----DIYAVNGIV-FHPVHGTLATVGSE-G-----TFSFWDKD-ARTKLK---PSEAMDMSISTCA  310 (356)
Q Consensus       246 ~~~~~~~~~~~~~~----~~~~i~~i~-~sp~~~~l~s~~~d-g-----~i~iwd~~-~~~~~~---~~~~~~~~v~~~~  310 (356)
                      +.....  ...++.    ....+..++ |+|||++|++++.+ .     .|.+|++. +++...   ....+...+..++
T Consensus       236 ~~~~~~--~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a  313 (365)
T 1jof_A          236 FPLIPP--GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA  313 (365)
T ss_dssp             EESSCT--TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC
T ss_pred             EEcCCC--CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccce
Confidence            111100  000000    000378899 99999988876543 2     89999996 565432   1333444567899


Q ss_pred             ECC---CCCEEEEEecc
Q psy12911        311 LNH---NGQIFAYAVSY  324 (356)
Q Consensus       311 ~s~---~~~~l~~~s~~  324 (356)
                      |+|   ||++|++++.+
T Consensus       314 ~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          314 VSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             EEECTTCTTEEEEECSS
T ss_pred             ecCCCcCCCEEEEEEcC
Confidence            999   89999999764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=1.8e-21  Score=175.23  Aligned_cols=222  Identities=11%  Similarity=0.077  Sum_probs=166.1

Q ss_pred             CcceeEEEEccCCCeEEEEcC-CCeEEEEEcCCCceeeecccC-CCeeEEEEEeCCCCCeEEEEEC---CCeEEEEeCCC
Q psy12911         76 SEPVLDVAWIDDGTKVFMAGC-DKTVKCWDLASNQSMQVAQHD-APVKTCHWIKAPNYTCLMTGSW---DKTLKFWDLRT  150 (356)
Q Consensus        76 ~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~  150 (356)
                      ..+|.+++|+|||+.||+++. ||++.||++.+++..++..+. ..+..++|+  || +++++++.   +...++|.+..
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYG--VG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTT--CS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCC--CC-eEEEEeccCCCCcceEEEEEec
Confidence            568999999999999999887 999999999888887776666 589999999  88 77777775   45556655433


Q ss_pred             ---CCceEEEeC--CCeeEEEecCCCe-EEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe
Q psy12911        151 ---PQPIMTINL--PERCYCADVDYPL-AVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG  224 (356)
Q Consensus       151 ---~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  224 (356)
                         +... .+..  .....+++++++. +++...++.+.+||+.++.......   .  ...+++|+|+    +..++.+
T Consensus        98 ~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~---~--~~~~~~~spD----G~~la~~  167 (582)
T 3o4h_A           98 SRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR---L--PGFGFVSDIR----GDLIAGL  167 (582)
T ss_dssp             TSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE---E--SSCEEEEEEE----TTEEEEE
T ss_pred             cCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec---C--CCceEEECCC----CCEEEEE
Confidence               2222 3322  2245678888863 4455555666699998775322211   1  1178999999    8899988


Q ss_pred             ecC----CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC--eEEEEEcCcceecCC
Q psy12911        225 SVE----GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG--TFSFWDKDARTKLKP  298 (356)
Q Consensus       225 ~~d----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg--~i~iwd~~~~~~~~~  298 (356)
                      +.+    +.|++||+....   ...+..+..           .+..++|||||++|+++..++  .|++||+.+++.. .
T Consensus       168 ~~~~~~~~~i~~~d~~~g~---~~~l~~~~~-----------~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~  232 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGG---LRVFDSGEG-----------SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D  232 (582)
T ss_dssp             EEEETTEEEEEEEETTTCC---CEEECCSSC-----------EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred             EEcCCCCeEEEEEcCCCCC---ceEeecCCC-----------ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence            777    778888887653   335555555           789999999999999888888  8999999998877 7


Q ss_pred             CCCCccceEEEE--------ECCCCCEEEEEeccC
Q psy12911        299 SEAMDMSISTCA--------LNHNGQIFAYAVSYD  325 (356)
Q Consensus       299 ~~~~~~~v~~~~--------~s~~~~~l~~~s~~d  325 (356)
                      +..|...+..++        |+|||.++++++.+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g  267 (582)
T 3o4h_A          233 LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG  267 (582)
T ss_dssp             CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence            778877777777        999997777777654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.88  E-value=2.9e-20  Score=171.74  Aligned_cols=268  Identities=7%  Similarity=-0.035  Sum_probs=182.4

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcc-----eeEEEEccCCCeEEEEcCC------
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEP-----VLDVAWIDDGTKVFMAGCD------   97 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~d------   97 (356)
                      .....++.|+|++   .+++++  |+.|++||+.++..  ...+.+|...     ...++|||||++|+.++.+      
T Consensus        16 ~~~~~~~~w~~dg---~~~~~~--~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~   88 (740)
T 4a5s_A           16 RLKLYSLRWISDH---EYLYKQ--ENNILVFNAEYGNS--SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH   88 (740)
T ss_dssp             CCCCCCEEECSSS---EEEEEE--TTEEEEEETTTCCE--EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSS
T ss_pred             cccccccEECCCC---cEEEEc--CCcEEEEECCCCce--EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEE
Confidence            3456689999999   888886  89999999988433  2345555432     3458899999999998875      


Q ss_pred             ---CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe-CCC------------
Q psy12911         98 ---KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN-LPE------------  161 (356)
Q Consensus        98 ---g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~------------  161 (356)
                         +.+.+||+.+++...+..+...+...+|+  |||+.|+.+. ++.|++||+.+++..+... +..            
T Consensus        89 ~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~S--PdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           89 SYTASYDIYDLNKRQLITEERIPNNTQWVTWS--PVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             CEEEEEEEEETTTTEECCSSCCCTTEEEEEEC--SSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             ccceEEEEEECCCCcEEEcccCCCcceeeEEC--CCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence               56779999999988888888899999999  9999999885 6899999998877543211 111            


Q ss_pred             --------eeEEEecCCCeEEEEecC------------------------------------CeEEEEeCCC---Ccc-c
Q psy12911        162 --------RCYCADVDYPLAVVGTAG------------------------------------RGIVLYQLEG---KPQ-E  193 (356)
Q Consensus       162 --------~~~~~~~~~~~~~~~~~d------------------------------------~~i~i~d~~~---~~~-~  193 (356)
                              ..+.+++++..|+.++.|                                    ..|.+||+.+   +.. .
T Consensus       166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~  245 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT  245 (740)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred             cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence                    136688888888776422                                    1588899887   521 1


Q ss_pred             cccccC-----cccccceEEEeecCCCCCCCeEEEeec----CCeEEEEEeCCCC----CCCccee--eeecCCCCCCCc
Q psy12911        194 FKKTES-----PLKYQNRCIAIFRDKKKQPAGYGLGSV----EGRVAIQYVNPAN----PKDNFTF--KCHRSNGGAGGV  258 (356)
Q Consensus       194 ~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~----dg~i~i~~~~~~~----~~~~~~~--~~~~~~~~~~~~  258 (356)
                      ...+..     .+...+..++|+|+    +..++....    +..|.+||...+.    ......+  ..+..       
T Consensus       246 ~~~l~~~~~~~~~~~~~~~~~wspd----g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~-------  314 (740)
T 4a5s_A          246 SIQITAPASMLIGDHYLCDVTWATQ----ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTG-------  314 (740)
T ss_dssp             EEEECCCHHHHTSCEEEEEEEEEET----TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSS-------
T ss_pred             EEEecCCccCCCCCeEEEEEEEeCC----CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCc-------
Confidence            111111     24566889999999    665555433    3368899987764    1223333  23332       


Q ss_pred             ccccce-----EEEEEeCCCCEEE-EEcC-C--CeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        259 QDIYAV-----NGIVFHPVHGTLA-TVGS-E--GTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       259 ~~~~~i-----~~i~~sp~~~~l~-s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                          .|     ...+|+|||+.|+ ..+. +  ..|++||+.+++...... ....|..+. ++|++.|+..+.
T Consensus       315 ----~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~-~~d~~~i~f~~~  382 (740)
T 4a5s_A          315 ----WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIE-ALTSDYLYYISN  382 (740)
T ss_dssp             ----CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEE-EECSSEEEEEES
T ss_pred             ----eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEE-EEeCCEEEEEEe
Confidence                33     3678999999876 5543 3  468889988765543333 344555543 244766666554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=5.2e-21  Score=160.97  Aligned_cols=248  Identities=12%  Similarity=0.049  Sum_probs=170.8

Q ss_pred             EEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCC--CeeEEEEEeCCCCCeEE-EEECCCeEEEEeCCCCCceEEE
Q psy12911         81 DVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLM-TGSWDKTLKFWDLRTPQPIMTI  157 (356)
Q Consensus        81 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~  157 (356)
                      .+++++++.++++++.++.|.+||+.+++.+.......  .+..++|+  ++++.++ ++..++.|.+||+.+++.+..+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA--PDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEEC--CCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            45678888899999999999999999998776433333  68899999  9988655 4556899999999999888777


Q ss_pred             eCCC---------eeEEEecCCCeEEEEecC------------CeEEEEeCCCCccccccccCcccccceEEEeecCCCC
Q psy12911        158 NLPE---------RCYCADVDYPLAVVGTAG------------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKK  216 (356)
Q Consensus       158 ~~~~---------~~~~~~~~~~~~~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  216 (356)
                      ..+.         ..+.+++++..++++..+            +.|.+||+.++..............+.+++++|+   
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d---  158 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD---  158 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT---
T ss_pred             EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC---
Confidence            7532         456788888888888865            8999999987532221111123346888999999   


Q ss_pred             CCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC---------------C-C------------------------
Q psy12911        217 QPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG---------------A-G------------------------  256 (356)
Q Consensus       217 ~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~---------------~-~------------------------  256 (356)
                       +. +++++  +.|.+||....  +....+..+.....               . .                        
T Consensus       159 -g~-l~~~~--~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  232 (349)
T 1jmx_B          159 -GS-LYVAG--PDIYKMDVKTG--KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL  232 (349)
T ss_dssp             -SC-EEEES--SSEEEECTTTC--CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred             -Cc-EEEcc--CcEEEEeCCCC--ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence             66 55543  34889987654  22222221110000               0 0                        


Q ss_pred             ----------C-------cccccceEEEEEeC-CCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEE
Q psy12911        257 ----------G-------VQDIYAVNGIVFHP-VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIF  318 (356)
Q Consensus       257 ----------~-------~~~~~~i~~i~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  318 (356)
                                +       ......+..++|+| ++++++++  ++.|.+||+.+++.+..+.. ...+.+++|+|||++|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l  309 (349)
T 1jmx_B          233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKL  309 (349)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCE
T ss_pred             eeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEE
Confidence                      0       00001456788999 99999988  88999999999988776653 3356799999999999


Q ss_pred             EEEeccCCcCCCccCCCCCCceeeecc
Q psy12911        319 AYAVSYDWSKGHEHNNPNKGNAIFLRP  345 (356)
Q Consensus       319 ~~~s~~d~~~~~~~~~~~~~~~~~~~~  345 (356)
                      ++++.+   ....+|+....+.+...+
T Consensus       310 ~~~~~~---~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          310 YLGGTF---NDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             EEESBS---SEEEEEETTTTEEEEEEE
T ss_pred             EEecCC---CeEEEEeccccceeeeee
Confidence            886432   445667776555544333

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=1.3e-20  Score=173.77  Aligned_cols=292  Identities=10%  Similarity=0.094  Sum_probs=185.2

Q ss_pred             eEEeCCCCC---CeeEEEecCCCCCceEEEEEeC---------CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCC
Q psy12911         22 FEVVSPPED---SISCMAFSPSTLPQYFLIAGSW---------DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT   89 (356)
Q Consensus        22 ~~~~~~h~~---~V~~~~~~~~~~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~   89 (356)
                      ..++.+|..   .|.+++|||||   ++|++++.         ++.|++||+.++.......+   ...+..++|||||+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~SpDg---~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~  122 (719)
T 1z68_A           49 YTILSNRTMKSVNASNYGLSPDR---QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGS  122 (719)
T ss_dssp             EEEECHHHHHTTTCSEEEECTTS---SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTT
T ss_pred             EEEEccccccccceeeEEECCCC---CeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCC
Confidence            344444433   38999999999   99998876         78999999987322000122   35688999999999


Q ss_pred             eEEEEcCCCeEEEEEcCCCceeeec--ccCCCe-----------------eEEEEEeCCCCCeEEEEECCC---------
Q psy12911         90 KVFMAGCDKTVKCWDLASNQSMQVA--QHDAPV-----------------KTCHWIKAPNYTCLMTGSWDK---------  141 (356)
Q Consensus        90 ~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~v-----------------~~~~~~~~~~~~~l~~~~~dg---------  141 (356)
                      .|+.+. ++.|++|++.+++...+.  ++...|                 .+++|+  |||+.|++++.|.         
T Consensus       123 ~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS--PDG~~la~~~~d~~~~~~~~~~  199 (719)
T 1z68_A          123 KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS--PNGKFLAYAEFNDTDIPVIAYS  199 (719)
T ss_dssp             CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC--TTSSEEEEEEEECTTSCEEEEE
T ss_pred             EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC--CCCCEEEEEEECCCCCceEEee
Confidence            999986 789999999988776532  332222                 489999  9999999988652         


Q ss_pred             -------------------------eEEEEeCCCCCce--EEEe------CCC---eeEEEecCCCeEEEEecC----Ce
Q psy12911        142 -------------------------TLKFWDLRTPQPI--MTIN------LPE---RCYCADVDYPLAVVGTAG----RG  181 (356)
Q Consensus       142 -------------------------~i~iwd~~~~~~~--~~~~------~~~---~~~~~~~~~~~~~~~~~d----~~  181 (356)
                                               .|++||+.+++..  ..+.      .+.   ....+++++..+++....    ..
T Consensus       200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~  279 (719)
T 1z68_A          200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSV  279 (719)
T ss_dssp             ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEE
T ss_pred             ccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEE
Confidence                                     7899999887653  1221      222   234556665555553332    35


Q ss_pred             EEEEe----CCCCccccccc--cCcccccce-----EEEeecCCCCCCCeEEE--eecCCeEEEEEeCCCCCCCcceeee
Q psy12911        182 IVLYQ----LEGKPQEFKKT--ESPLKYQNR-----CIAIFRDKKKQPAGYGL--GSVEGRVAIQYVNPANPKDNFTFKC  248 (356)
Q Consensus       182 i~i~d----~~~~~~~~~~~--~~~~~~~i~-----~~~~~~~~~~~~~~~~~--~~~dg~i~i~~~~~~~~~~~~~~~~  248 (356)
                      |.+||    +.++.......  ...+...+.     .+.|+|+    +..++.  ...+|...||-++....+ ...+..
T Consensus       280 l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd----g~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~  354 (719)
T 1z68_A          280 LSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD----AISYYKIFSDKDGYKHIHYIKDTVEN-AIQITS  354 (719)
T ss_dssp             EEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT----SSCEEEEEECTTSCEEEEEESSCSTT-CEECSC
T ss_pred             EEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC----CCeEEEEEEccCCceEEEEEECCCCc-eEeccc
Confidence            88899    66654322110  023344444     7899999    565443  456676666655543322 333333


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCc--c----eecCC-CCCCccceEEEEECCCCC
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDA--R----TKLKP-SEAMDMSISTCALNHNGQ  316 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~--~----~~~~~-~~~~~~~v~~~~~s~~~~  316 (356)
                      +..           .+..+.++ +++.|+..+.+     +.+++|.+..  +    +++.. +.+|...+..+.|+||++
T Consensus       355 ~~~-----------~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~  422 (719)
T 1z68_A          355 GKW-----------EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAK  422 (719)
T ss_dssp             SSS-----------CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGS
T ss_pred             Cce-----------EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCC
Confidence            332           57777777 77776665554     7888998753  3    22221 334667788999999999


Q ss_pred             EEEEEeccCCcCCCccCCCCCCc
Q psy12911        317 IFAYAVSYDWSKGHEHNNPNKGN  339 (356)
Q Consensus       317 ~l~~~s~~d~~~~~~~~~~~~~~  339 (356)
                      +++..++..-.....+++...+.
T Consensus       423 ~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          423 YYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             SEEEEECCBSSCEEEEECSSSCC
T ss_pred             EEEEEcCCCCCCeEEEEECCCCC
Confidence            98876544433334455554444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.86  E-value=1.6e-20  Score=160.87  Aligned_cols=275  Identities=9%  Similarity=-0.034  Sum_probs=176.2

Q ss_pred             CceEEeCCCCCC-----eeEEEecCCCCCceEEEEEeCC---CeEEEEeccCCCceeeeeeccCCcc-eeEEEEccCCCe
Q psy12911         20 KDFEVVSPPEDS-----ISCMAFSPSTLPQYFLIAGSWD---NNVRCWEVEPNGKTIPKSMQGMSEP-VLDVAWIDDGTK   90 (356)
Q Consensus        20 ~~~~~~~~h~~~-----V~~~~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~   90 (356)
                      .....+..+...     +.+++|+|+|   ++|+.....   ..|.+||+.++  .. ..+..+... ...+.|+|||++
T Consensus        21 ~~~~~l~~~~~~~~~~~~~~~~~SpdG---~~l~~~~~~~g~~~l~~~d~~~~--~~-~~l~~~~~~~~~~~~~spdg~~   94 (396)
T 3c5m_A           21 VKVTRLTPTDIICHRNYFYQKCFTQDG---KKLLFAGDFDGNRNYYLLNLETQ--QA-VQLTEGKGDNTFGGFISTDERA   94 (396)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTS---CEEEEEECTTSSCEEEEEETTTT--EE-EECCCSSCBCTTTCEECTTSSE
T ss_pred             cceEEEecCCCCccceeeecCcCCCCC---CEEEEEEecCCCceEEEEECCCC--cE-EEeecCCCCccccceECCCCCE
Confidence            344555554433     7889999999   887776543   46888888763  22 223333333 334889999999


Q ss_pred             EEEEcCCCeEEEEEcCCCceeeecc-cCCCeeE-------------------EEEEeCCCCCeEEEE-----ECCCeEEE
Q psy12911         91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKT-------------------CHWIKAPNYTCLMTG-----SWDKTLKF  145 (356)
Q Consensus        91 l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~v~~-------------------~~~~~~~~~~~l~~~-----~~dg~i~i  145 (356)
                      |+.++.++.|++||+.+++...+.. +......                   +.|+  |+++.++.+     ..+..|++
T Consensus        95 l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s--pdg~~~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           95 FFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQ--PLTSWEKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC--CCCSHHHHHHHHHTCCCEEEEE
T ss_pred             EEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccC--CCCcceeeeeeccCCCcceEEE
Confidence            9999999999999999887665433 3322212                   2345  666665544     35678999


Q ss_pred             EeCCCCCceEEEeCCCe--eEEEec-CCCeEEEEecC------CeEEEEeCCCCccccccccCcccccceEEEeecCCCC
Q psy12911        146 WDLRTPQPIMTINLPER--CYCADV-DYPLAVVGTAG------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKK  216 (356)
Q Consensus       146 wd~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  216 (356)
                      ||+.+++..........  ...+++ ++..++..+.+      ..|.+||+.++..... ........+..++|+|+   
T Consensus       173 ~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~spd---  248 (396)
T 3c5m_A          173 VDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI-KEHAEGESCTHEFWIPD---  248 (396)
T ss_dssp             EETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES-SCCCTTEEEEEEEECTT---
T ss_pred             EECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe-eccCCCccccceEECCC---
Confidence            99998876655544443  344555 45556655443      4688899876532111 11111335778899999   


Q ss_pred             CCCeEEEeecC-----CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeC-CCCEEEEEc----------
Q psy12911        217 QPAGYGLGSVE-----GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP-VHGTLATVG----------  280 (356)
Q Consensus       217 ~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~s~~----------  280 (356)
                       +..++.++.+     +.|++||+.....   ..+....            ... +.|+| +|+++++++          
T Consensus       249 -g~~l~~~~~~~~~~~~~l~~~d~~~g~~---~~l~~~~------------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~  311 (396)
T 3c5m_A          249 -GSAMAYVSYFKGQTDRVIYKANPETLEN---EEVMVMP------------PCS-HLMSNFDGSLMVGDGCDAPVDVADA  311 (396)
T ss_dssp             -SSCEEEEEEETTTCCEEEEEECTTTCCE---EEEEECC------------SEE-EEEECSSSSEEEEEECCC-------
T ss_pred             -CCEEEEEecCCCCccceEEEEECCCCCe---EEeeeCC------------CCC-CCccCCCCceEEEecCCcceeeccc
Confidence             6777666544     4488888765422   1222111            233 89999 999888754          


Q ss_pred             ------CCCeEEEEEcCcceecCCCCCCcc-----------ceEEEEECCCCCEEEEEecc
Q psy12911        281 ------SEGTFSFWDKDARTKLKPSEAMDM-----------SISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       281 ------~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~s~~  324 (356)
                            .++.|++||+.+++. ..+..+..           .+..++|+|||+.|+.++..
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~  371 (396)
T 3c5m_A          312 DSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF  371 (396)
T ss_dssp             ---CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             cccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecC
Confidence                  347899999987764 33443433           25678999999999988754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.86  E-value=5.8e-19  Score=148.77  Aligned_cols=269  Identities=10%  Similarity=0.040  Sum_probs=183.5

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEe----------CCCeEEEEeccCCCceeeeeecc------CCcceeE
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGS----------WDNNVRCWEVEPNGKTIPKSMQG------MSEPVLD   81 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~------~~~~v~~   81 (356)
                      ..+....+..+..+  .++|+|++   ++|++++          .++.|.+||..+.  .....+..      +......
T Consensus        40 t~~~~~~i~~g~~p--~i~~spdg---~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~~~~~~~g~~p~~  112 (361)
T 2oiz_A           40 NGKFLGMVPTAFNG--HVQVSNDG---KKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLPPKRVQGLNYDGL  112 (361)
T ss_dssp             TCCEEEEEECCEEE--EEEECTTS---SEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEECTTBCCBCCCGGG
T ss_pred             CCeEEEEecCCCCC--ceEECCCC---CEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcCccccccCCCcce
Confidence            34445555555555  89999999   8888886          3678999998763  33344432      2345678


Q ss_pred             EEEccCCCeEEEEcC--CCeEEEEEcCCCceeee-cccCCCeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCC-CCceEE
Q psy12911         82 VAWIDDGTKVFMAGC--DKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRT-PQPIMT  156 (356)
Q Consensus        82 ~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~  156 (356)
                      ++|+|||++|+++..  ++.|.+||+.+++.+.. ...... ..+.+.  |++ ..+++.+.||.+.+|++.. ++....
T Consensus       113 i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~--p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~  189 (361)
T 2oiz_A          113 FRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQ--PNRPRSFMTICGDGGLLTINLGEDGKVASQ  189 (361)
T ss_dssp             EEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEEC--TTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred             EEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEc--CCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence            999999999998864  58999999999987765 544332 334555  544 6788889999999999865 444422


Q ss_pred             Ee------CCCe--eEEEecCCCeEEEEecCCeEEEEeCCCCccccccc---cC-------cccccceEEEeecCCCCCC
Q psy12911        157 IN------LPER--CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT---ES-------PLKYQNRCIAIFRDKKKQP  218 (356)
Q Consensus       157 ~~------~~~~--~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~-------~~~~~i~~~~~~~~~~~~~  218 (356)
                      ..      ....  ......++..++..+.++.+.++|+..........   ..       ........++++|+    +
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d----g  265 (361)
T 2oiz_A          190 SRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA----S  265 (361)
T ss_dssp             EECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT----T
T ss_pred             ccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC----C
Confidence            21      1111  11223445566777788999999997653211110   00       00112234788998    5


Q ss_pred             CeEEEeec-----------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEE
Q psy12911        219 AGYGLGSV-----------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSF  287 (356)
Q Consensus       219 ~~~~~~~~-----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~i  287 (356)
                      ..++++..           .+.|.+||....  +.+.++..+             ...+++|+|||++|++++. +.|.+
T Consensus       266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--~~v~~i~~~-------------~p~~ia~spdg~~l~v~n~-~~v~v  329 (361)
T 2oiz_A          266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--QRVARIPGR-------------DALSMTIDQQRNLMLTLDG-GNVNV  329 (361)
T ss_dssp             TEEEEEEESSCCTTCTTCCCSEEEEEETTTT--EEEEEEECT-------------TCCEEEEETTTTEEEEECS-SCEEE
T ss_pred             CeEEEEEccCCCcccccCCCceEEEEECCCC--cEEEEEecC-------------CeeEEEECCCCCEEEEeCC-CeEEE
Confidence            56665543           347888887655  555555543             2678999999999999887 99999


Q ss_pred             EEcCcc--eecCCCCCCccceEEEEECCCCC
Q psy12911        288 WDKDAR--TKLKPSEAMDMSISTCALNHNGQ  316 (356)
Q Consensus       288 wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~  316 (356)
                      ||..++  +.+.++..+......++++|+|+
T Consensus       330 ~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          330 YDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            999999  99888766677788999999986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=5.1e-19  Score=149.74  Aligned_cols=242  Identities=10%  Similarity=0.031  Sum_probs=163.8

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEecc-CCCcee-eeeeccCCcceeEEEEccCCCe--EEEEc--------
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVE-PNGKTI-PKSMQGMSEPVLDVAWIDDGTK--VFMAG--------   95 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~-~~~~~~-~~~~~~~~~~v~~~~~s~~~~~--l~~~~--------   95 (356)
                      +...+..++|+|++   ++|++++.+ .|.+|++. + +... ......+ +.+.+++|+|+|++  ++++.        
T Consensus        38 ~~~~~~~~a~spdg---~~l~~~~~~-~v~~~~~~~~-g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~  111 (365)
T 1jof_A           38 QDEPISWMTFDHER---KNIYGAAMK-KWSSFAVKSP-TEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYA  111 (365)
T ss_dssp             TTCCCSEEEECTTS---SEEEEEEBT-EEEEEEEEET-TEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred             CCCCCcEEEECCCC---CEEEEEccc-eEEEEEECCC-CCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceecc
Confidence            44578899999999   999999888 99999997 4 3221 1111111 23566899999994  55553        


Q ss_pred             -----CCCeEEEEEcC-CCceee-ec----ccCCCeeEEEEEeCCCCCeEEEEEC-CCeEEEEeCC-CCCce--EEEeC-
Q psy12911         96 -----CDKTVKCWDLA-SNQSMQ-VA----QHDAPVKTCHWIKAPNYTCLMTGSW-DKTLKFWDLR-TPQPI--MTINL-  159 (356)
Q Consensus        96 -----~dg~i~vwd~~-~~~~~~-~~----~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~-~~~~~--~~~~~-  159 (356)
                           .++.+.+|++. .++... ..    .+...+.+++|+  |+|+++++++. ++.|++||+. +++..  ..+.. 
T Consensus       112 ~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s--pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~  189 (365)
T 1jof_A          112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD--PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP  189 (365)
T ss_dssp             EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred             ceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC--CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC
Confidence                 68999999997 455443 21    255679999999  99998887764 6799999998 67643  33432 


Q ss_pred             --CC--eeEEEecCCCeEEEEec-CCeEEEEeCCC--Cccc-----cccccCcc---cc------cceEEE-eecCCCCC
Q psy12911        160 --PE--RCYCADVDYPLAVVGTA-GRGIVLYQLEG--KPQE-----FKKTESPL---KY------QNRCIA-IFRDKKKQ  217 (356)
Q Consensus       160 --~~--~~~~~~~~~~~~~~~~~-d~~i~i~d~~~--~~~~-----~~~~~~~~---~~------~i~~~~-~~~~~~~~  217 (356)
                        ..  ..+.+++++..++++.. ++.|.+|++..  +...     ........   ..      .+..++ |+|+    
T Consensus       190 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd----  265 (365)
T 1jof_A          190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS----  265 (365)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT----
T ss_pred             CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCC----
Confidence              22  34677788888877765 68999998763  3221     11111111   11      478899 9999    


Q ss_pred             CCeEEEeecCC------eEEEEEeCCCCCCCcce---eeeecCCCCCCCcccccceEEEEEeC---CCCEEEEEcCC-Ce
Q psy12911        218 PAGYGLGSVEG------RVAIQYVNPANPKDNFT---FKCHRSNGGAGGVQDIYAVNGIVFHP---VHGTLATVGSE-GT  284 (356)
Q Consensus       218 ~~~~~~~~~dg------~i~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~i~~sp---~~~~l~s~~~d-g~  284 (356)
                      ++.++++..+.      .|.+|+++.. .+....   ...+..           ....++|+|   +|++|++++.+ +.
T Consensus       266 G~~l~v~~~~~~~~~~~~i~v~~~~~~-g~~~~~~~~~~~~~~-----------~~~~~a~sp~~~dg~~l~v~~~~~~~  333 (365)
T 1jof_A          266 GKYMFASSRANKFELQGYIAGFKLRDC-GSIEKQLFLSPTPTS-----------GGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             SSEEEEEEEESSTTSCCEEEEEEECTT-SCEEEEEEEEECSSC-----------CTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             CCEEEEECCCCCCCCCCeEEEEEECCC-CCEEEeeeeeecCCC-----------CcccceecCCCcCCCEEEEEEcCCCe
Confidence            77777665433      8999999632 222211   111222           356789999   89999998865 89


Q ss_pred             EEEEEcCcc
Q psy12911        285 FSFWDKDAR  293 (356)
Q Consensus       285 i~iwd~~~~  293 (356)
                      |.+|++...
T Consensus       334 v~v~~~~~~  342 (365)
T 1jof_A          334 LEIYRWKDE  342 (365)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEchh
Confidence            999998755

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.85  E-value=4.2e-19  Score=149.64  Aligned_cols=277  Identities=9%  Similarity=0.012  Sum_probs=181.7

Q ss_pred             eEEEEEe------CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC----------CCeEEEEEcCCC
Q psy12911         45 YFLIAGS------WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC----------DKTVKCWDLASN  108 (356)
Q Consensus        45 ~~l~~~~------~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~  108 (356)
                      +++++..      .|+.|.+||..++  .....+..+..+  .++|+|||++++++..          ++.|.+||+.+.
T Consensus        16 ~~~yv~~~~~~~~~d~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           16 NRIYVMDSVFMHLTESRVHVYDYTNG--KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GEEEEEECCGGGGGGCEEEEEETTTC--CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CEEEEECCCCCccccCeEEEEECCCC--eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            5555543      3789999998773  334566655555  8999999999998862          678999999988


Q ss_pred             ceeeecc-------cCCCeeEEEEEeCCCCCeEEEEEC--CCeEEEEeCCCCCceEE-EeCCCe-eEEEecCC-CeEEEE
Q psy12911        109 QSMQVAQ-------HDAPVKTCHWIKAPNYTCLMTGSW--DKTLKFWDLRTPQPIMT-INLPER-CYCADVDY-PLAVVG  176 (356)
Q Consensus       109 ~~~~~~~-------~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~-~~~~~~~~-~~~~~~  176 (356)
                      +.+....       +......++++  |+|++|+++..  ++.|.+||+.+++.+.. +..+.. ...+.+.+ ..+++.
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~s--pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~  169 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQT--TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTI  169 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEEC--TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEE
T ss_pred             cEEEEEEcCccccccCCCcceEEEC--CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEE
Confidence            7765221       23457789999  99999998874  57899999999988887 665443 12234443 567788


Q ss_pred             ecCCeEEEEeCCCCccccccc----cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKT----ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSN  252 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  252 (356)
                      +.||.+.+|++..........    ..........+.+.++    +..++..+.++.+.++|+..........+......
T Consensus       170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~  245 (361)
T 2oiz_A          170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALD----KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDE  245 (361)
T ss_dssp             ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEEC----SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHH
T ss_pred             CCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEeccc----CCEEEEEeCCCeEEEEEecCCCceecccccccCcc
Confidence            899999999986522211000    0000111122333455    45666777889999999865432211111100000


Q ss_pred             CCCCCcccccceEEEEEeCCCCEEEEEcC-----------CCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEE
Q psy12911        253 GGAGGVQDIYAVNGIVFHPVHGTLATVGS-----------EGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       253 ~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                      ....+. .......++|+|+++.++++..           .+.|.+||+.+++.+.++..+.  +.+++|+|||++|+++
T Consensus       246 ~~~~~~-~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~  322 (361)
T 2oiz_A          246 DKAKNW-VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTL  322 (361)
T ss_dssp             HHHTTC-EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEE
T ss_pred             cccccc-ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEe
Confidence            000000 0001223789999887776543           3589999999999999988776  8999999999999887


Q ss_pred             eccCCcCCCccCCCCCC
Q psy12911        322 VSYDWSKGHEHNNPNKG  338 (356)
Q Consensus       322 s~~d~~~~~~~~~~~~~  338 (356)
                      +.    ....+||...+
T Consensus       323 n~----~~v~v~D~~t~  335 (361)
T 2oiz_A          323 DG----GNVNVYDISQP  335 (361)
T ss_dssp             CS----SCEEEEECSSS
T ss_pred             CC----CeEEEEECCCC
Confidence            62    66677777765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=6.6e-18  Score=140.75  Aligned_cols=243  Identities=10%  Similarity=-0.001  Sum_probs=171.6

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCC------------------------CeEEEEeccCCCceeeeee-ccCCcceeEEE
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWD------------------------NNVRCWEVEPNGKTIPKSM-QGMSEPVLDVA   83 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~d------------------------g~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~   83 (356)
                      -+.|.+++++|+|   +++++...+                        +.|.+||..++ ... ..+ .++-.....++
T Consensus        23 l~~v~~va~d~~G---~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g-~~~-~~~~~~~~~~p~gia   97 (329)
T 3fvz_A           23 PGQVSGVALDSKN---NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA-EIL-QSSGKNLFYLPHGLS   97 (329)
T ss_dssp             CSCEEEEEECTTC---CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC-CEE-EEECTTTCSSEEEEE
T ss_pred             cCCceEEEECCCC---CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC-eEE-eccCCCccCCceEEE
Confidence            4679999999999   888888777                        47999998763 322 333 24456789999


Q ss_pred             EccCCCeEEEEcCCCeEEEEEcCCCc-eee-e---------cccCCCeeEEEEEeCC-CCCeEEEEE-CCCeEEEEeCCC
Q psy12911         84 WIDDGTKVFMAGCDKTVKCWDLASNQ-SMQ-V---------AQHDAPVKTCHWIKAP-NYTCLMTGS-WDKTLKFWDLRT  150 (356)
Q Consensus        84 ~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~-~---------~~~~~~v~~~~~~~~~-~~~~l~~~~-~dg~i~iwd~~~  150 (356)
                      ++++|+++++...++.|++||..... .+. +         ..+-.....++++  + ++.++++.+ .++.|++|| .+
T Consensus        98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~--~~~g~lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A           98 IDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVE--PSTGAVFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEEC--TTTCCEEEEECSSCCEEEEEC-TT
T ss_pred             ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEe--CCCCeEEEEeCCCCCeEEEEc-CC
Confidence            99999988888889999999986552 222 2         2344468899999  8 788887776 689999999 56


Q ss_pred             CCceEEEeCC-------------CeeEEEecC-CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCC-
Q psy12911        151 PQPIMTINLP-------------ERCYCADVD-YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKK-  215 (356)
Q Consensus       151 ~~~~~~~~~~-------------~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  215 (356)
                      ++.+..+...             ...++++++ +..+++...++.|++||..++..............+..++++|... 
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~  254 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLF  254 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEE
Confidence            7777766421             234667777 4556666778999999998554333332233455677888888200 


Q ss_pred             -CCCCeEEEeecCCeEEEEEeCCCCCCCcceee---eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        216 -KQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK---CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       216 -~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                       .++..+++...+..+++|+....  +.+..+.   .+..           ....++++|+|.++++...++.|++|++.
T Consensus       255 ~~~g~~~v~~~~~~~v~~~~~~~g--~~~~~~~~~~~~~~-----------~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          255 AVNGKPYFGDQEPVQGFVMNFSSG--EIIDVFKPVRKHFD-----------MPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEECCCCTTCSCCCCEEEEETTTC--CEEEEECCSSSCCS-----------SEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             EeCCCEEeccCCCcEEEEEEcCCC--eEEEEEcCCCCccC-----------CeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence             00334444455668999998765  4444442   2222           68899999999888999999999999986


Q ss_pred             c
Q psy12911        292 A  292 (356)
Q Consensus       292 ~  292 (356)
                      .
T Consensus       322 ~  322 (329)
T 3fvz_A          322 E  322 (329)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.84  E-value=6.4e-19  Score=161.03  Aligned_cols=279  Identities=9%  Similarity=-0.040  Sum_probs=186.0

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEE--eCCCeEEEEeccCCCceeeeeeccCCccee---------EEEEc--cCCC
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAG--SWDNNVRCWEVEPNGKTIPKSMQGMSEPVL---------DVAWI--DDGT   89 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~---------~~~~s--~~~~   89 (356)
                      ..+.+|...|..++|+++.   -+++..  +.++...||....++.  ...+..|...+.         ...|+  |||+
T Consensus        17 ~~~~~~~~~~~~~~~s~~~---~~~~~~~~~~~~~~~l~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~   91 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDE---VWWVAPRPAEAGRATLVRRRADGA--EESALPAPWNVRNRVFEYSGFPWAGVPRPAGG   91 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTE---EEEEEEETTTTTEEEEEEECTTSC--EEESSCTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred             HHHhhcCCccceeEEcCCe---EEEEecCcccCCcEEEEEECCCCC--cceeCCCCccccccccccCCccceeeeecCCC
Confidence            3466789999999999886   666666  5588999999754332  245666666666         66676  9999


Q ss_pred             e-EEEEcC-CCeEEEEEcC--C-Cceeeecc-----cCCCeeEEEEEeCCCCCeEEEEECC----------CeEEEEeCC
Q psy12911         90 K-VFMAGC-DKTVKCWDLA--S-NQSMQVAQ-----HDAPVKTCHWIKAPNYTCLMTGSWD----------KTLKFWDLR  149 (356)
Q Consensus        90 ~-l~~~~~-dg~i~vwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~  149 (356)
                      . |+.++. +..|.++++.  + ++...+..     |...+..++|+  |||+.|++++.+          ..|++||+.
T Consensus        92 ~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~  169 (662)
T 3azo_A           92 PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL--PERGEVWCMAEEFTGEGPSDVRRFLAAVPLD  169 (662)
T ss_dssp             CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE--TTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred             eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC--CCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence            8 776654 5678888876  4 55555555     56778999999  999999998877          589999998


Q ss_pred             C------CCceEEEe-C-CCe--eEEEecCCCeEEEEecC--------CeEEEEeCC-CCcc-ccccccCcccccceEEE
Q psy12911        150 T------PQPIMTIN-L-PER--CYCADVDYPLAVVGTAG--------RGIVLYQLE-GKPQ-EFKKTESPLKYQNRCIA  209 (356)
Q Consensus       150 ~------~~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~d--------~~i~i~d~~-~~~~-~~~~~~~~~~~~i~~~~  209 (356)
                      +      ++. ..+. . +..  ...+++++..|+.++.+        ..|.+||+. ++.. ....+...+...+..++
T Consensus       170 ~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~  248 (662)
T 3azo_A          170 GSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE  248 (662)
T ss_dssp             STTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred             CCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence            7      544 3333 2 222  35677888888877754        489999998 4411 12222223356788999


Q ss_pred             eecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEE-
Q psy12911        210 IFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFW-  288 (356)
Q Consensus       210 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iw-  288 (356)
                      |+|+    +.+++++..++...||.++....+.......+.....   ..-...+..++|+|+++++++++. +.++|| 
T Consensus       249 ~spd----g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~---p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          249 WAPD----GSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAG---PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             ECTT----SCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSC---CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred             ECCC----CeEEEEECCCCCeEEEEEECCCCceeecccccccccC---ccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence            9999    6777888888855666655332222222222211000   000001567899999999999998 999999 


Q ss_pred             -EcCcceecCCCCCCccceEEEEECCCCCEEE
Q psy12911        289 -DKDARTKLKPSEAMDMSISTCALNHNGQIFA  319 (356)
Q Consensus       289 -d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  319 (356)
                       |+.+++ +..+..|...+..+. +++++.++
T Consensus       321 ~d~~~~~-~~~l~~~~~~~~~~~-s~~~~~~~  350 (662)
T 3azo_A          321 LDPESGE-LVDAAGPWTEWAATL-TVSGTRAV  350 (662)
T ss_dssp             EETTTTE-EEECCSSCCEEEEEE-EEETTEEE
T ss_pred             EECCCCc-EEEecCCCCeEEEEE-ecCCCEEE
Confidence             555555 566777777777761 44554443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.83  E-value=3.8e-18  Score=142.58  Aligned_cols=273  Identities=6%  Similarity=-0.086  Sum_probs=184.0

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  108 (356)
                      ...|.++.|++++   ..++..+.++.++.|.-     .....+..+...+.+++|+++|++++++..++.|.+||..++
T Consensus         5 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~   76 (333)
T 2dg1_A            5 QQDLPTLFYSGKS---NSAVPIISESELQTITA-----EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK   76 (333)
T ss_dssp             -CCCCBCCSCGGG---GCSSCCCCGGGSCEEEC-----EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             ccccceeeecCCc---cceeEEeecccCccccc-----ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC
Confidence            4468889999998   77777788889999921     233455666777899999999997778888999999999988


Q ss_pred             ceeeec-ccCCCeeEEEEEeCCCCCeEEEEECC----CeEEEEeCCCCCceEEEeC---CC--eeEEEecCCCeEEEEec
Q psy12911        109 QSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWD----KTLKFWDLRTPQPIMTINL---PE--RCYCADVDYPLAVVGTA  178 (356)
Q Consensus       109 ~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~  178 (356)
                      +...+. .+...+.+++++  ++++++++...+    +.|.+||..+++....+..   ..  ..+.++.++..+++...
T Consensus        77 ~~~~~~~~~~~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  154 (333)
T 2dg1_A           77 EIKRPFVSHKANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR  154 (333)
T ss_dssp             CEEEEEECSSSSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred             cEEEEeeCCCCCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecc
Confidence            876643 566789999999  999887777666    6899999888766544431   11  23455556655554443


Q ss_pred             ------CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911        179 ------GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPANPKDNFTFKCHRS  251 (356)
Q Consensus       179 ------d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  251 (356)
                            .+.|..+|..++....  .. .....+..++++|+    +..+ ++...++.|.+|+.+... .....+.....
T Consensus       155 ~~~~~~~~~l~~~~~~~~~~~~--~~-~~~~~~~~i~~~~d----g~~l~v~~~~~~~i~~~d~~~~g-~~~~~~~~~~~  226 (333)
T 2dg1_A          155 GYSTNPLGGVYYVSPDFRTVTP--II-QNISVANGIALSTD----EKVLWVTETTANRLHRIALEDDG-VTIQPFGATIP  226 (333)
T ss_dssp             CBTTBCCEEEEEECTTSCCEEE--EE-EEESSEEEEEECTT----SSEEEEEEGGGTEEEEEEECTTS-SSEEEEEEEEE
T ss_pred             ccccCCCceEEEEeCCCCEEEE--ee-cCCCcccceEECCC----CCEEEEEeCCCCeEEEEEecCCC-cCcccccceEE
Confidence                  3566667665433211  11 11234678999999    6645 455568899999986421 11211110000


Q ss_pred             CCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCcc------ceEEEEECCCCCEEEEEecc
Q psy12911        252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDM------SISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~s~~  324 (356)
                      .. ..+   ...+..++++++|+++++...++.|.+||.+ ++.+..+..+..      .+.+++|+||++.|+.++..
T Consensus       227 ~~-~~~---~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          227 YY-FTG---HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EE-CCS---SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             Ee-cCC---CCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            00 000   0157789999999988888888999999984 555555543332      68999999998877766654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.81  E-value=2e-17  Score=138.99  Aligned_cols=249  Identities=12%  Similarity=0.021  Sum_probs=163.1

Q ss_pred             CCeeEEEecCCCCCceEEEEEe---------CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC---
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGS---------WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD---   97 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---   97 (356)
                      ..+..+++  +|   +.++...         .++.|.+|++.++..   ..+    ..+..++|+|||++|+.++.+   
T Consensus        15 ~~~~~~~~--dG---~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~---~~l----~~~~~~~~SpDg~~la~~~~~~~~   82 (347)
T 2gop_A           15 AYLSDPRT--KG---ELVAYVLTKANLKDNKYENTIVIENLKNNAR---RFI----ENATMPRISPDGKKIAFMRANEEK   82 (347)
T ss_dssp             CEEEEEEE--ET---TEEEEEEEEEETTTTEEEEEEEEEETTTCCE---EEE----ESCEEEEECTTSSEEEEEEEETTT
T ss_pred             EEcccceE--CC---cEEEEEEeecCcccCCccceEEEEeCCCCce---EEc----ccCCCeEECCCCCEEEEEEeccCC
Confidence            46777888  77   6666542         256899999987332   223    568899999999999887653   


Q ss_pred             C--eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC---------------------------CeEEEEeC
Q psy12911         98 K--TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD---------------------------KTLKFWDL  148 (356)
Q Consensus        98 g--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------------------------g~i~iwd~  148 (356)
                      +  .|.+|++.+++...+..+.. +..+.|+  |+++.|+.++.+                           ..|++||+
T Consensus        83 ~~~~l~~~~~~~g~~~~l~~~~~-~~~~~ws--pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~  159 (347)
T 2gop_A           83 KVSEIWVADLETLSSKKILEAKN-IRSLEWN--EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT  159 (347)
T ss_dssp             TEEEEEEEETTTTEEEEEEEESE-EEEEEEC--TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred             CcceEEEEECCCCceEEEEcCCC-ccceeEC--CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence            3  48888998888776555555 9999999  999988887642                           57999999


Q ss_pred             CCCCceEEEeC-CCeeEEEecCCCeEEEEecCC-------eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCe
Q psy12911        149 RTPQPIMTINL-PERCYCADVDYPLAVVGTAGR-------GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAG  220 (356)
Q Consensus       149 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  220 (356)
                      .+++.+..+.. ......+++++ .++++..++       ...+|.+.++..  ..+.. . ..+..  ++|+    +..
T Consensus       160 ~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~l~~-~-~~~~~--~spd----g~~  228 (347)
T 2gop_A          160 ESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--EKMFE-K-VSFYA--VDSD----GER  228 (347)
T ss_dssp             TTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE--EEEEE-E-ESEEE--EEEC----SSC
T ss_pred             CCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCce--EEecc-C-cceee--ECCC----CCE
Confidence            88876343332 33455667777 666665432       334444433321  11111 1 33333  3888    677


Q ss_pred             EEEeecC--------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE-EEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        221 YGLGSVE--------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG-IVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       221 ~~~~~~d--------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      ++.++.+        ..|.+|+  ..  +.......+..           .+.. +.|+ ++ ++++++.++.+++| +.
T Consensus       229 l~~~~~~~~~~~~~~~~l~~~d--~~--~~~~l~~~~~~-----------~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          229 ILLYGKPEKKYMSEHNKLYIYD--GK--EVMGILDEVDR-----------GVGQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             EEEEECCSSSCCCSSCEEEEEC--SS--CEEESSTTCCS-----------EEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             EEEEEccccCCccccceEEEEC--CC--ceEeccccCCc-----------ccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            7776644        3455555  22  22222222332           5775 8999 88 99999999999999 87


Q ss_pred             cceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        292 ARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       292 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +++.... ..+.+.|.+++|+|  .++++++.++
T Consensus       291 ~g~~~~~-~~~~~~v~~~~~s~--~~~~~~~~~~  321 (347)
T 2gop_A          291 DGEIKPI-AKGRHWIMGFDVDE--IVVYLKETAT  321 (347)
T ss_dssp             SSSEEEE-ECSSSEEEEEEESS--SEEEEEECSS
T ss_pred             CCceEEE-ecCCCeEEeeeeeC--cEEEEEcCCC
Confidence            6654333 33477899999999  6777766544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=1.8e-18  Score=159.75  Aligned_cols=233  Identities=8%  Similarity=0.022  Sum_probs=151.9

Q ss_pred             cceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCC-----eeEEEEEeCCCCCeEEEEECC---------C
Q psy12911         77 EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAP-----VKTCHWIKAPNYTCLMTGSWD---------K  141 (356)
Q Consensus        77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~-----v~~~~~~~~~~~~~l~~~~~d---------g  141 (356)
                      ....+++|+|||++++++  |+.|++||+.+++... +..|...     ...+.|+  |||++|+.++.+         +
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--pdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS--PDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC--TTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEEC--CCCCEEEEEECCeeeEEEccce
Confidence            346689999999888886  8999999999998765 3444322     2447889  999999998876         5


Q ss_pred             eEEEEeCCCCCceEEEeCC--CeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCccc-----------------
Q psy12911        142 TLKFWDLRTPQPIMTINLP--ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLK-----------------  202 (356)
Q Consensus       142 ~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----------------  202 (356)
                      .+.+||+.+++........  .....+++++..|+.+ .++.|++|++.++........ ...                 
T Consensus        93 ~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~-g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           93 SYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWT-GKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSC-CBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCC-CCccceecCcccccccchhc
Confidence            6779999998654322222  2456778888888877 568999999987653222111 111                 


Q ss_pred             ccceEEEeecCCCCCCCeEEEeecCC------------------------------------eEEEEEeCC---CCCCCc
Q psy12911        203 YQNRCIAIFRDKKKQPAGYGLGSVEG------------------------------------RVAIQYVNP---ANPKDN  243 (356)
Q Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~~dg------------------------------------~i~i~~~~~---~~~~~~  243 (356)
                      .....+.|+||    +..|+.++.|.                                    .+++||+..   ......
T Consensus       171 ~~~~~~~wSpD----g~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~  246 (740)
T 4a5s_A          171 SAYSALWWSPN----GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS  246 (740)
T ss_dssp             SSSBCEEECTT----SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred             CCCcceEECCC----CCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence            22245899999    77888775432                                    244455543   210011


Q ss_pred             ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc----CCCeEEEEEcCcce----ec--CCC--CCCccceE----
Q psy12911        244 FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG----SEGTFSFWDKDART----KL--KPS--EAMDMSIS----  307 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~----~dg~i~iwd~~~~~----~~--~~~--~~~~~~v~----  307 (356)
                      ..+.....     -..+...+..++|+|||++++...    .+..|++||+.+++    +.  ..+  ..|...|.    
T Consensus       247 ~~l~~~~~-----~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~  321 (740)
T 4a5s_A          247 IQITAPAS-----MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP  321 (740)
T ss_dssp             EEECCCHH-----HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred             EEecCCcc-----CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence            11111000     000122689999999999766553    33479999999887    33  222  44665554    


Q ss_pred             -EEEECCCCCEEE-EEecc
Q psy12911        308 -TCALNHNGQIFA-YAVSY  324 (356)
Q Consensus       308 -~~~~s~~~~~l~-~~s~~  324 (356)
                       .++|+|||+.|+ ..+..
T Consensus       322 ~~p~fspDG~~l~~~~s~~  340 (740)
T 4a5s_A          322 SEPHFTLDGNSFYKIISNE  340 (740)
T ss_dssp             CCCEECTTSSEEEEEEECT
T ss_pred             CCceEcCCCCEEEEEEEcC
Confidence             789999999988 66643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=1.6e-16  Score=129.73  Aligned_cols=240  Identities=5%  Similarity=-0.009  Sum_probs=167.3

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec------cCCcceeEEEEc-cCCCeEEEEcC-CC
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ------GMSEPVLDVAWI-DDGTKVFMAGC-DK   98 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~------~~~~~v~~~~~s-~~~~~l~~~~~-dg   98 (356)
                      +|-....++++++++   +++++...++.|.+||.+.  ... ..+.      ++...+..+++. ++++++++... ++
T Consensus        27 g~~~~p~~v~~~~~g---~l~v~~~~~~~i~~~d~~g--~~~-~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~  100 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQN---DIIVADTNNHRIQIFDKEG--RFK-FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH  100 (286)
T ss_dssp             TCBSCEEEEEECTTC---CEEEEEGGGTEEEEECTTS--CEE-EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred             CccCCCceEEECCCC---CEEEEECCCCEEEEECCCC--cEE-EEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence            455678999999998   8888888899999999764  222 3332      244578899994 67766666533 88


Q ss_pred             eEEEEEcCCCceeeec--ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC-----CeeEEEecCCC
Q psy12911         99 TVKCWDLASNQSMQVA--QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP-----ERCYCADVDYP  171 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~  171 (356)
                      .|.+|| .+++.+...  .+...+.++++.  ++++++++...++.|.+||. .++.+..+...     ...++++.++.
T Consensus       101 ~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A          101 QIQIYN-QYGQFVRKFGATILQHPRGVTVD--NKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             EEEEEC-TTSCEEEEECTTTCSCEEEEEEC--TTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             EEEEEC-CCCcEEEEecCccCCCceEEEEe--CCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCC
Confidence            999999 455554422  344578999999  89988887777899999995 46666666422     13455666666


Q ss_pred             eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC-eEEEEEeCCCCCCCcceeeeec
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG-RVAIQYVNPANPKDNFTFKCHR  250 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~  250 (356)
                      .+++...++.|.+||....... ..........+..+++.++    +.++++...++ .|.+|+.+.   +.+..+..+.
T Consensus       177 l~v~~~~~~~i~~~~~~g~~~~-~~~~~g~~~~p~~i~~d~~----G~l~v~~~~~~~~i~~~~~~g---~~~~~~~~~~  248 (286)
T 1q7f_A          177 IFISDNRAHCVKVFNYEGQYLR-QIGGEGITNYPIGVGINSN----GEILIADNHNNFNLTIFTQDG---QLISALESKV  248 (286)
T ss_dssp             EEEEEGGGTEEEEEETTCCEEE-EESCTTTSCSEEEEEECTT----CCEEEEECSSSCEEEEECTTS---CEEEEEEESS
T ss_pred             EEEEECCCCEEEEEcCCCCEEE-EEccCCccCCCcEEEECCC----CCEEEEeCCCCEEEEEECCCC---CEEEEEcccC
Confidence            6666677899999998654211 1111112246789999998    77777777775 999998542   3445554432


Q ss_pred             CCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART  294 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~  294 (356)
                      ..         ..+.+++++|+|+++++ +.|++|++|++....
T Consensus       249 ~~---------~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          249 KH---------AQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             CC---------SCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CC---------CcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            21         04779999999987777 569999999986543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=8.1e-18  Score=143.64  Aligned_cols=233  Identities=14%  Similarity=0.057  Sum_probs=153.0

Q ss_pred             eeeccCCcceeE-----EEEccCCCeEEEEcC-CC--eEEEEEcCCCceeeec-ccCCCeeEEEEEeCCCCCeEEEEECC
Q psy12911         70 KSMQGMSEPVLD-----VAWIDDGTKVFMAGC-DK--TVKCWDLASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWD  140 (356)
Q Consensus        70 ~~~~~~~~~v~~-----~~~s~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d  140 (356)
                      ..+..|......     .+|+|||++|+.++. ++  .|.+||+.+++...+. .+...+..+.|+  |+++.|+.++.+
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s--pdg~~l~~~~~~  101 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS--PDDDALFYVKDG  101 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEEC--TTSSEEEEEETT
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEc--CCCCEEEEEeCC
Confidence            556666655555     889999999998887 66  4889999999887754 444455577899  999999999999


Q ss_pred             CeEEEEeCCCCCceEEEeCCCee-----EEEecCCCeEEEE----------------------ecCCeEEEEeCCCCccc
Q psy12911        141 KTLKFWDLRTPQPIMTINLPERC-----YCADVDYPLAVVG----------------------TAGRGIVLYQLEGKPQE  193 (356)
Q Consensus       141 g~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----------------------~~d~~i~i~d~~~~~~~  193 (356)
                      +.|++||+.+++....+..+...     ...+.++..++..                      ..+..|.+||+.++...
T Consensus       102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~  181 (388)
T 3pe7_A          102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST  181 (388)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence            99999999999877666655432     2234555555532                      23478999999887532


Q ss_pred             cccccCcccccceEEEeec-CCCCCCCeEEEeecC------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE
Q psy12911        194 FKKTESPLKYQNRCIAIFR-DKKKQPAGYGLGSVE------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG  266 (356)
Q Consensus       194 ~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (356)
                      ...   .....+..++|+| +    +..++....+      ..|.+++.+...   ...+..+..         ...+..
T Consensus       182 ~l~---~~~~~~~~~~~sp~d----g~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~---------~~~~~~  242 (388)
T 3pe7_A          182 VIL---QENQWLGHPIYRPYD----DSTVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTHAE---------GESCTH  242 (388)
T ss_dssp             EEE---EESSCEEEEEEETTE----EEEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCCCT---------TEEEEE
T ss_pred             Eee---cCCccccccEECCCC----CCEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeCCC---------Cccccc
Confidence            221   2345678999999 8    6777776653      256666665432   222222221         004778


Q ss_pred             EEEeCCCCEEEEEcC-C----CeEEEEEcCccee--cCCCCCCccc---eEEEEECCCCCEEEEEec
Q psy12911        267 IVFHPVHGTLATVGS-E----GTFSFWDKDARTK--LKPSEAMDMS---ISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       267 i~~sp~~~~l~s~~~-d----g~i~iwd~~~~~~--~~~~~~~~~~---v~~~~~s~~~~~l~~~s~  323 (356)
                      ++|+|||+.|+..+. +    +.|++||+.+++.  +..+.++...   ...++|+|||+.|+....
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  309 (388)
T 3pe7_A          243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ  309 (388)
T ss_dssp             EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred             ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence            899999987765443 2    2499999998864  3333331111   122479999999987653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.78  E-value=1.7e-16  Score=130.31  Aligned_cols=235  Identities=8%  Similarity=0.006  Sum_probs=164.7

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCce-EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQY-FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      +...+..+..+.....+++|+|++   + +++++..++.|.+|+..+.    ...+..+...+.+++++++|+++++...
T Consensus        16 ~~~~~~~l~~~~~~~eg~~~d~~g---~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~dg~l~v~~~~   88 (296)
T 3e5z_A           16 AGAEARRLADGFTWTEGPVYVPAR---SAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQGHLIACSHG   88 (296)
T ss_dssp             TTCCCEEEECCCSSEEEEEEEGGG---TEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTTCCEEEEETT
T ss_pred             CCCcEEEEecCCccccCCeEeCCC---CEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCCCcEEEEecC
Confidence            344556666677888999999998   6 7888888999999999873    3455567788999999999998887777


Q ss_pred             CCeEEEEEcCCCceeeecc-----cCCCeeEEEEEeCCCCCeEEEEEC-----------------CCeEEEEeCCCCCce
Q psy12911         97 DKTVKCWDLASNQSMQVAQ-----HDAPVKTCHWIKAPNYTCLMTGSW-----------------DKTLKFWDLRTPQPI  154 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~  154 (356)
                      ++.|.+||..+++...+..     ....+..++++  ++|+++++...                 .+.|..+|.. ++ +
T Consensus        89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~  164 (296)
T 3e5z_A           89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-L  164 (296)
T ss_dssp             TTEEEEECSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-E
T ss_pred             CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-E
Confidence            7899999998887654322     12356788998  89988877321                 1233333322 11 1


Q ss_pred             EEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEE
Q psy12911        155 MTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQY  234 (356)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  234 (356)
                      ..+.                                         ........++++|+    +..+++.+.++.|.+|+
T Consensus       165 ~~~~-----------------------------------------~~~~~~~gi~~s~d----g~~lv~~~~~~~i~~~~  199 (296)
T 3e5z_A          165 SAPI-----------------------------------------RDRVKPNGLAFLPS----GNLLVSDTGDNATHRYC  199 (296)
T ss_dssp             EEEE-----------------------------------------CCCSSEEEEEECTT----SCEEEEETTTTEEEEEE
T ss_pred             EEee-----------------------------------------cCCCCCccEEECCC----CCEEEEeCCCCeEEEEE
Confidence            1110                                         11223467889998    67777777788999999


Q ss_pred             eCCCCCCC---cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEE
Q psy12911        235 VNPANPKD---NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCAL  311 (356)
Q Consensus       235 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  311 (356)
                      ++.. ...   ...+..+..           .+..++++++|+++++.  ++.|.+||.. ++.+..+..+.. +.+++|
T Consensus       200 ~~~~-g~~~~~~~~~~~~~~-----------~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f  263 (296)
T 3e5z_A          200 LNAR-GETEYQGVHFTVEPG-----------KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCF  263 (296)
T ss_dssp             ECSS-SCEEEEEEEECCSSS-----------CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEE
T ss_pred             ECCC-CcCcCCCeEeeCCCC-----------CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEE
Confidence            8621 121   112211111           46689999999977776  7899999987 777777776666 899999


Q ss_pred             -CCCCCEEEEEecc
Q psy12911        312 -NHNGQIFAYAVSY  324 (356)
Q Consensus       312 -s~~~~~l~~~s~~  324 (356)
                       +|+++.|.+++.+
T Consensus       264 ~~~d~~~L~v~t~~  277 (296)
T 3e5z_A          264 GGPEGRTLYMTVST  277 (296)
T ss_dssp             ESTTSCEEEEEETT
T ss_pred             ECCCCCEEEEEcCC
Confidence             6899999888754

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.77  E-value=2.6e-16  Score=144.74  Aligned_cols=245  Identities=12%  Similarity=0.052  Sum_probs=166.8

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCC-----eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe--
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDN-----NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT--   99 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--   99 (356)
                      +|...+..++|||||   ++||.+..++     .|++||+.++ ......+.  ...+..++|+|||+.|+.++.++.  
T Consensus       122 ~~~~~~~~~~~SPDg---~~la~~~~~~G~~~~~i~v~d~~tg-~~~~~~~~--~~~~~~~~wspDg~~l~~~~~~~~~~  195 (710)
T 2xdw_A          122 DGTVALRGYAFSEDG---EYFAYGLSASGSDWVTIKFMKVDGA-KELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDG  195 (710)
T ss_dssp             TSCEEEEEEEECTTS---SEEEEEEEETTCSCEEEEEEETTTT-EEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSS
T ss_pred             CCCEEEEEEEECCCC---CEEEEEEcCCCCceEEEEEEECCCC-CCCccccc--CcccceEEEEeCCCEEEEEEECCccc
Confidence            354578899999999   8888776543     8999999883 32222222  223678999999999999887765  


Q ss_pred             --------------EEEEEcCCCcee---eec--ccCCCeeEEEEEeCCCCCeEEEEEC-----CCeEEEEeCCC-----
Q psy12911        100 --------------VKCWDLASNQSM---QVA--QHDAPVKTCHWIKAPNYTCLMTGSW-----DKTLKFWDLRT-----  150 (356)
Q Consensus       100 --------------i~vwd~~~~~~~---~~~--~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~-----  150 (356)
                                    |++|++.+++..   ...  .+...+..+.|+  |||++|+.++.     +..|++||+.+     
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  273 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS--DDGRYVLLSIREGCDPVNRLWYCDLQQESNGI  273 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc--CCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence                          999999887632   122  245567899999  99999888765     56899999986     


Q ss_pred             -CC-ceEEEeCCC--eeEEEecCCCeEEEEecC----CeEEEEeCCCCcc-ccccccCccc-ccceEEEeecCCCCCCCe
Q psy12911        151 -PQ-PIMTINLPE--RCYCADVDYPLAVVGTAG----RGIVLYQLEGKPQ-EFKKTESPLK-YQNRCIAIFRDKKKQPAG  220 (356)
Q Consensus       151 -~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~-~~~~~~~~~~-~~i~~~~~~~~~~~~~~~  220 (356)
                       +. ....+..+.  ....++.++..++..+..    ..|.+||+.+... ....+..... ..+..++++++    +.+
T Consensus       274 ~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~l  349 (710)
T 2xdw_A          274 TGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS----NFL  349 (710)
T ss_dssp             CSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT----TEE
T ss_pred             CCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC----CEE
Confidence             43 345555433  233466677777666553    4699999987642 1122221222 35677888866    678


Q ss_pred             EEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE----cCCCeEEEEEcCcce
Q psy12911        221 YGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV----GSEGTFSFWDKDART  294 (356)
Q Consensus       221 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~----~~dg~i~iwd~~~~~  294 (356)
                      +++...++..+||.++....+.+..+..+..           .+..++++|++..++..    ...++|+.||+.+++
T Consensus       350 v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~-----------~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          350 VLCYLHDVKNTLQLHDLATGALLKIFPLEVG-----------SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECCCSS-----------EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEECCEEEEEEEECCCCCEEEecCCCCc-----------eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8888889876666555322244455554443           68889999998766533    235789999998776

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.77  E-value=1e-15  Score=127.36  Aligned_cols=262  Identities=11%  Similarity=0.041  Sum_probs=174.8

Q ss_pred             CCeEEEEeccCCCceeeeeec------cCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEE
Q psy12911         53 DNNVRCWEVEPNGKTIPKSMQ------GMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWI  126 (356)
Q Consensus        53 dg~i~vw~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~  126 (356)
                      ++.|.+||.+++  .....+.      ........+.+. +++..++...++.|.+||..+++.+...........++++
T Consensus        16 ~~~l~~~d~~t~--~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~   92 (328)
T 3dsm_A           16 NATLSYYDPATC--EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFL   92 (328)
T ss_dssp             CBEEEEEETTTT--EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEE
T ss_pred             CceEEEEECCCC--EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEe
Confidence            789999999873  2222221      122346777774 4445556666899999999999987744556778999998


Q ss_pred             eCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC------eeEEEecCCCeEEEEe--cCCeEEEEeCCCCcccccccc
Q psy12911        127 KAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE------RCYCADVDYPLAVVGT--AGRGIVLYQLEGKPQEFKKTE  198 (356)
Q Consensus       127 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~  198 (356)
                        +++.++++...++.|.+||+.+++....+....      ....+...+..++++.  .++.|.++|+.++....... 
T Consensus        93 --~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~-  169 (328)
T 3dsm_A           93 --SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELT-  169 (328)
T ss_dssp             --ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEE-
T ss_pred             --CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEE-
Confidence              777555554478999999999998888877554      3333333666676665  48999999999875432221 


Q ss_pred             CcccccceEEEeecCCCCCCCeEEEeecC----------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEE
Q psy12911        199 SPLKYQNRCIAIFRDKKKQPAGYGLGSVE----------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIV  268 (356)
Q Consensus       199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~d----------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  268 (356)
                        .......+++.|+    +.+++++..+          +.|.++|....  +....+.....          .....++
T Consensus       170 --~g~~p~~i~~~~d----G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~--~v~~~~~~~~g----------~~p~~la  231 (328)
T 3dsm_A          170 --IGIQPTSLVMDKY----NKMWTITDGGYEGSPYGYEAPSLYRIDAETF--TVEKQFKFKLG----------DWPSEVQ  231 (328)
T ss_dssp             --CSSCBCCCEECTT----SEEEEEBCCBCTTCSSCBCCCEEEEEETTTT--EEEEEEECCTT----------CCCEEEE
T ss_pred             --cCCCccceEEcCC----CCEEEEECCCccCCccccCCceEEEEECCCC--eEEEEEecCCC----------CCceeEE
Confidence              2334567888888    6666666554          78888887654  33333332111          0478999


Q ss_pred             EeCCCCEEEEEcCCCeEEEEEcCcceecCC--CCCCccceEEEEECCCCCEEEEEeccCC--cCCCccCCCCCCcee
Q psy12911        269 FHPVHGTLATVGSEGTFSFWDKDARTKLKP--SEAMDMSISTCALNHNGQIFAYAVSYDW--SKGHEHNNPNKGNAI  341 (356)
Q Consensus       269 ~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~s~~d~--~~~~~~~~~~~~~~~  341 (356)
                      |+|++++|+++..  .|.+||..+++....  +.........++++|++..|..+...||  ......|++. +..+
T Consensus       232 ~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          232 LNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             ECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             EecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            9999999888765  899999998876432  2222456889999996555555542332  3345567776 4433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.77  E-value=3.8e-16  Score=143.67  Aligned_cols=233  Identities=9%  Similarity=0.012  Sum_probs=159.5

Q ss_pred             cCCcceeEEEEccCCCeEEEEcCCC-----eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCe------
Q psy12911         74 GMSEPVLDVAWIDDGTKVFMAGCDK-----TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKT------  142 (356)
Q Consensus        74 ~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~------  142 (356)
                      +|...+..++|||||++|+.++.++     .|++||+.+++..........+..++|+  |||+.|+.++.++.      
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~ws--pDg~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWT--HDGKGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEEC--TTSSEEEEEECCCCSSCCSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEE--eCCCEEEEEEECCccccccc
Confidence            3445788999999999998776533     8999999999887633222337789999  99999999988766      


Q ss_pred             ----------EEEEeCCCCCc--eEEEeCC--C---eeEEEecCCCeEEEEec-----CCeEEEEeCCC------Ccccc
Q psy12911        143 ----------LKFWDLRTPQP--IMTINLP--E---RCYCADVDYPLAVVGTA-----GRGIVLYQLEG------KPQEF  194 (356)
Q Consensus       143 ----------i~iwd~~~~~~--~~~~~~~--~---~~~~~~~~~~~~~~~~~-----d~~i~i~d~~~------~~~~~  194 (356)
                                |++|++.+++.  ...+...  .   ....+++++..++..+.     +..|.+||+.+      +....
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~  279 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence                      99999988763  2333332  1   24567788888877664     57899999976      32122


Q ss_pred             ccccCcccccceEEEeecCCCCCCCeEEEeecC----CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEe
Q psy12911        195 KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE----GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFH  270 (356)
Q Consensus       195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s  270 (356)
                      ..+.. ....+.. .++++    +..++..+..    +.|.+|+++.........+..+...         ..+..++|+
T Consensus       280 ~~l~~-~~~~~~~-~~s~d----g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---------~~~~~~~~~  344 (710)
T 2xdw_A          280 VKLID-NFEGEYD-YVTNE----GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK---------DVLEWVACV  344 (710)
T ss_dssp             EEEEC-SSSSCEE-EEEEE----TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS---------CEEEEEEEE
T ss_pred             EEeeC-CCCcEEE-EEecc----CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC---------CeEEEEEEE
Confidence            22221 2222333 47787    5666665543    3588888765432123444444320         047889999


Q ss_pred             CCCCEEEEEcCCCe--EEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        271 PVHGTLATVGSEGT--FSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       271 p~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      +++.++++...|+.  |++|++.+++.+..+..+.+.+..++++|+++.|+.+.+
T Consensus       345 ~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s  399 (710)
T 2xdw_A          345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFT  399 (710)
T ss_dssp             TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred             cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEe
Confidence            88888889988885  566777677776777777788999999999987765543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.76  E-value=3.5e-15  Score=132.06  Aligned_cols=276  Identities=14%  Similarity=0.063  Sum_probs=179.9

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC--CCceeeecccCCCeeE
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA--SNQSMQVAQHDAPVKT  122 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~v~~  122 (356)
                      .++++...++.|.++|..+  ...+..+. ....+..+.|+|||+++++++.|+.|.+||+.  +++.+...........
T Consensus       168 ~~~V~~~~~~~V~viD~~t--~~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~  244 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGST--YEIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  244 (567)
T ss_dssp             EEEEEETTTTEEEEEETTT--CCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             eEEEEeCCCCeEEEEECCC--CeEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence            6777777899999999988  33444554 33457799999999999999999999999995  6666653333445678


Q ss_pred             EEEEe--CCCCCeEEEEEC-CCeEEEEeCCCCCceEEEeCCC------------e-------------------------
Q psy12911        123 CHWIK--APNYTCLMTGSW-DKTLKFWDLRTPQPIMTINLPE------------R-------------------------  162 (356)
Q Consensus       123 ~~~~~--~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~------------~-------------------------  162 (356)
                      ++|++  .|+|++++++.. ++.|.++|..+.+.+..+....            +                         
T Consensus       245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~  324 (567)
T 1qks_A          245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  324 (567)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence            89981  128888777665 5899999999888877765211            0                         


Q ss_pred             ---------------------eEEEecCCCeEEEEe-cCCeEEEEeCCCCcccccccc---CcccccceEEE-eecCCCC
Q psy12911        163 ---------------------CYCADVDYPLAVVGT-AGRGIVLYQLEGKPQEFKKTE---SPLKYQNRCIA-IFRDKKK  216 (356)
Q Consensus       163 ---------------------~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~---~~~~~~i~~~~-~~~~~~~  216 (356)
                                           ...+++++.+++++. .++.|.++|+.+++.......   .+|.+  .... ++|+.  
T Consensus       325 vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p~~--  400 (567)
T 1qks_A          325 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHPTF--  400 (567)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEEEETTT--
T ss_pred             EecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceeeECCCC--
Confidence                                 112444556665544 578999999998754322211   12222  2222 46662  


Q ss_pred             CCCeEEEee-cCCeEEEEEeCCCC-----CCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC-------CC
Q psy12911        217 QPAGYGLGS-VEGRVAIQYVNPAN-----PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS-------EG  283 (356)
Q Consensus       217 ~~~~~~~~~-~dg~i~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-------dg  283 (356)
                       +..++++. .++.|.+++.+...     .+.+.++.....           .-..+..+|++++|.+...       .+
T Consensus       401 -g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~-----------g~~~i~~~p~~~~l~v~~~~~~~~~~~~  468 (567)
T 1qks_A          401 -GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-----------GSLFIKTHPNSQYLYVDATLNPEAEISG  468 (567)
T ss_dssp             -EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-----------CCCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred             -CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC-----------CCEEEEeCCCCCeEEEecCCCCCcccCc
Confidence             23344443 46899999997632     234444443321           2234778999999888663       35


Q ss_pred             eEEEEEcCcc---------eecC-----CCCCCccceEEEEECCCCCEEEEEec--cCCcCCCccCCCCCCc
Q psy12911        284 TFSFWDKDAR---------TKLK-----PSEAMDMSISTCALNHNGQIFAYAVS--YDWSKGHEHNNPNKGN  339 (356)
Q Consensus       284 ~i~iwd~~~~---------~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~s~--~d~~~~~~~~~~~~~~  339 (356)
                      +|.++|+.+.         +.+.     .+..-...+..+.|+|+|+++..+..  .+.+....++|.+...
T Consensus       469 ~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~  540 (567)
T 1qks_A          469 SVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE  540 (567)
T ss_dssp             CEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             eEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence            9999999876         1221     11112357899999999999988742  2234555556666443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=2.7e-16  Score=131.02  Aligned_cols=232  Identities=11%  Similarity=-0.040  Sum_probs=160.7

Q ss_pred             CcceeEEEEccCCCeEEEEcCC------------------------CeEEEEEcCCCceeeecc--cCCCeeEEEEEeCC
Q psy12911         76 SEPVLDVAWIDDGTKVFMAGCD------------------------KTVKCWDLASNQSMQVAQ--HDAPVKTCHWIKAP  129 (356)
Q Consensus        76 ~~~v~~~~~s~~~~~l~~~~~d------------------------g~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~  129 (356)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++.....+  +-.....++++  +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d--~  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSID--T  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEEC--T
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEEC--C
Confidence            4679999999999988887776                        479999999888776433  44578899999  9


Q ss_pred             CCCeEEEEECCCeEEEEeCCCCC-ceEEEeC------------CCeeEEEec-CCCeEEEEe-cCCeEEEEeCCCCcccc
Q psy12911        130 NYTCLMTGSWDKTLKFWDLRTPQ-PIMTINL------------PERCYCADV-DYPLAVVGT-AGRGIVLYQLEGKPQEF  194 (356)
Q Consensus       130 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~------------~~~~~~~~~-~~~~~~~~~-~d~~i~i~d~~~~~~~~  194 (356)
                      +++++++...++.|++||..... .+..+..            ....+++++ .+..+++.+ .++.|++|+...... .
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~-~  179 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFV-T  179 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEE-E
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEE-E
Confidence            99988888888999999975442 5565532            113456666 455555554 589999999554321 1


Q ss_pred             cccc--------CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE
Q psy12911        195 KKTE--------SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG  266 (356)
Q Consensus       195 ~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (356)
                      ....        ...-..+..+++.|+.   +.++++...++.|++|+.+.+  +.+..+.....         ...+..
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~---g~l~v~d~~~~~I~~~~~~~G--~~~~~~~~~~~---------~~~~~~  245 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHL---DQLCVADRENGRIQCFKTDTK--EFVREIKHASF---------GRNVFA  245 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTT---TEEEEEETTTTEEEEEETTTC--CEEEEECCTTT---------TTCEEE
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCC---CEEEEEECCCCEEEEEECCCC--cEEEEEecccc---------CCCcce
Confidence            1110        0112347899999873   456777778899999998744  34444432111         015788


Q ss_pred             EEEeC------CCCEEEEEcCCCeEEEEEcCcceecCCC---CCCccceEEEEECCCCCEEEEEecc
Q psy12911        267 IVFHP------VHGTLATVGSEGTFSFWDKDARTKLKPS---EAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       267 i~~sp------~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                      ++|+|      +|+.+++...+..|++||..+++.+..+   .++...+.+++++|+|.++++...+
T Consensus       246 ~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~  312 (329)
T 3fvz_A          246 ISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT  312 (329)
T ss_dssp             EEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred             eeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence            99999      3333333344568999999999888776   3566778999999999766666543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.75  E-value=2.5e-14  Score=117.34  Aligned_cols=266  Identities=11%  Similarity=-0.018  Sum_probs=179.6

Q ss_pred             CCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEc
Q psy12911         26 SPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL  105 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  105 (356)
                      ..+...+.++++.++|   .+.++...++.|.+||.. + .........+...+.++++.++|+.+++...++.|..||.
T Consensus        11 ~~~~~~~~~i~~d~~g---~l~v~~~~~~~v~~~d~~-~-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~   85 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKG---KVWITQHKANMISCINLD-G-KITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK   85 (299)
T ss_dssp             CSSSCCEEEEEECTTS---CEEEEETTTTEEEEECTT-C-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCcCCCccceEECCCC---CEEEEecCCCcEEEEcCC-C-CeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence            3456789999999998   777766667899999987 2 2222223334577999999999988887777889999998


Q ss_pred             CCCceeee--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC---C--eeEEEecCCCeEEEEec
Q psy12911        106 ASNQSMQV--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP---E--RCYCADVDYPLAVVGTA  178 (356)
Q Consensus       106 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~  178 (356)
                      . ++...+  ......+..+++.  +++.++++...++.|..||. +++.. .+...   .  ..++++.++...++...
T Consensus        86 ~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~  160 (299)
T 2z2n_A           86 K-GIIKEYTLPNPDSAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDNALWFTENQ  160 (299)
T ss_dssp             T-SCEEEEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred             C-CcEEEEeCCCcCCCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence            6 443332  2245678899998  88888877777889999998 55443 22221   2  23445555555555556


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCc
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGV  258 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (356)
                      ++.|..||. ++........ .....+..+++.++    +.++++...++.|.+|+. ..  . ...+.....       
T Consensus       161 ~~~i~~~~~-~g~~~~~~~~-~~~~~~~~i~~~~~----g~l~v~~~~~~~i~~~~~-~g--~-~~~~~~~~~-------  223 (299)
T 2z2n_A          161 NNAIGRITE-SGDITEFKIP-TPASGPVGITKGND----DALWFVEIIGNKIGRITT-SG--E-ITEFKIPTP-------  223 (299)
T ss_dssp             TTEEEEECT-TCCEEEEECS-STTCCEEEEEECTT----SSEEEEETTTTEEEEECT-TC--C-EEEEECSST-------
T ss_pred             CCEEEEEcC-CCcEEEeeCC-CCCCcceeEEECCC----CCEEEEccCCceEEEECC-CC--c-EEEEECCCC-------
Confidence            789999998 4432211111 22345778999888    666666666788988887 33  1 222211100       


Q ss_pred             ccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC-CCCCCccceEEEEECCCCCEEEEEe
Q psy12911        259 QDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK-PSEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       259 ~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                        ...+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++ ++|++.++.+
T Consensus       224 --~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~  284 (299)
T 2z2n_A          224 --NARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETIWFAME  284 (299)
T ss_dssp             --TCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCEEEEET
T ss_pred             --CCCceeEEECCCCCEEEeccCCceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCEEEEec
Confidence              0168899999999988877778899999984 54322 23344567899999 9998877764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=1.4e-15  Score=124.21  Aligned_cols=226  Identities=9%  Similarity=0.018  Sum_probs=157.4

Q ss_pred             cCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ec------ccCCCeeEEEEEeCCCCCeEEEEEC-CCeEEE
Q psy12911         74 GMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VA------QHDAPVKTCHWIKAPNYTCLMTGSW-DKTLKF  145 (356)
Q Consensus        74 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~------~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~i  145 (356)
                      ++-..+.+++++++++++++...++.|.+||.. ++.+. +.      .+...+..+++.+ +++.++++... ++.|++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~-~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVR-NSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEET-TTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEc-CCCeEEEEcCCCCCEEEE
Confidence            455678999999999988888889999999987 44433 32      2345788999941 56666665533 789999


Q ss_pred             EeCCCCCceEEEeCCC----eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeE
Q psy12911        146 WDLRTPQPIMTINLPE----RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGY  221 (356)
Q Consensus       146 wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  221 (356)
                      || .+++.+..+....    ..+.++.++..+++...++.|.+||....... ..........+..+++.++    +.++
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~p~~i~~~~~----g~l~  178 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH-KFGCSKHLEFPNGVVVNDK----QEIF  178 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE-EEECTTTCSSEEEEEECSS----SEEE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEE-EeCCCCccCCcEEEEECCC----CCEE
Confidence            99 6777777775322    34556666766666677899999997643221 1111122345789999998    6777


Q ss_pred             EEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC-eEEEEEcCcceecCCCC
Q psy12911        222 GLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG-TFSFWDKDARTKLKPSE  300 (356)
Q Consensus       222 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~  300 (356)
                      ++...++.|++|+.+.   ..+..+..+..         ...+..++++|+|+++++...++ .|.+||.. ++.+..+.
T Consensus       179 v~~~~~~~i~~~~~~g---~~~~~~~~~g~---------~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~  245 (286)
T 1q7f_A          179 ISDNRAHCVKVFNYEG---QYLRQIGGEGI---------TNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALE  245 (286)
T ss_dssp             EEEGGGTEEEEEETTC---CEEEEESCTTT---------SCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEE
T ss_pred             EEECCCCEEEEEcCCC---CEEEEEccCCc---------cCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEc
Confidence            7777899999999753   22333322210         01578999999999999988886 99999964 66655554


Q ss_pred             CCc--cceEEEEECCCCCEEEE
Q psy12911        301 AMD--MSISTCALNHNGQIFAY  320 (356)
Q Consensus       301 ~~~--~~v~~~~~s~~~~~l~~  320 (356)
                      .+.  ..+.+++++|+|+++++
T Consensus       246 ~~~~~~~~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          246 SKVKHAQCFDVALMDDGSVVLA  267 (286)
T ss_dssp             ESSCCSCEEEEEEETTTEEEEE
T ss_pred             ccCCCCcceeEEECCCCcEEEE
Confidence            433  34789999999987776

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=1.1e-16  Score=146.26  Aligned_cols=249  Identities=11%  Similarity=0.036  Sum_probs=160.1

Q ss_pred             eEEeCCCCCCee---------EEEec--CCCCCceE-EEEEeC-CCeEEEEeccCCC-ceeeeeecc-----CCcceeEE
Q psy12911         22 FEVVSPPEDSIS---------CMAFS--PSTLPQYF-LIAGSW-DNNVRCWEVEPNG-KTIPKSMQG-----MSEPVLDV   82 (356)
Q Consensus        22 ~~~~~~h~~~V~---------~~~~~--~~~~~~~~-l~~~~~-dg~i~vw~~~~~~-~~~~~~~~~-----~~~~v~~~   82 (356)
                      .+.+..|...|.         ...|+  |||   +. |+.++. +..|.++++...+ .. ...+..     |...+..+
T Consensus        60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg---~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~  135 (662)
T 3azo_A           60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAG---GPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADP  135 (662)
T ss_dssp             EEESSCTTCCBCCCGGGTCCCCEEEECCSSS---SCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEE
T ss_pred             cceeCCCCccccccccccCCccceeeeecCC---CeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCc
Confidence            445566666666         66666  998   76 665543 5566666654001 12 234444     67789999


Q ss_pred             EEccCCCeEEEEcCC----------CeEEEEEcCC------Cceeeec-ccCCCeeEEEEEeCCCCCeEEEEECC-----
Q psy12911         83 AWIDDGTKVFMAGCD----------KTVKCWDLAS------NQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWD-----  140 (356)
Q Consensus        83 ~~s~~~~~l~~~~~d----------g~i~vwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d-----  140 (356)
                      +|+|||+.|++++.+          ..|++||+.+      ++...+. .+...+..++|+  |||+.|+.++.+     
T Consensus       136 ~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~  213 (662)
T 3azo_A          136 VLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMP  213 (662)
T ss_dssp             EEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCT
T ss_pred             EECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceEC--CCCCEEEEEECCCCCCC
Confidence            999999999998876          5899999998      6666666 667788899999  999999988755     


Q ss_pred             ---CeEEEEeCC-CC---CceEEEeCC-Ce--eEEEecCCCeEEEEecCC--eEEEEeCCCCccccccccCcccc-----
Q psy12911        141 ---KTLKFWDLR-TP---QPIMTINLP-ER--CYCADVDYPLAVVGTAGR--GIVLYQLEGKPQEFKKTESPLKY-----  203 (356)
Q Consensus       141 ---g~i~iwd~~-~~---~~~~~~~~~-~~--~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~-----  203 (356)
                         ..|++||+. ++   +.......+ ..  ...+++++.+++++..++  .|.+||+.++...  ........     
T Consensus       214 ~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~--~l~~~~~~~~~p~  291 (662)
T 3azo_A          214 WEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT--QLCRREEEFAGPL  291 (662)
T ss_dssp             TTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE--ESSCCSSBSSCCC
T ss_pred             CCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee--ecccccccccCcc
Confidence               379999998 56   333333332 22  445667778777777777  6666676554321  11111111     


Q ss_pred             ---cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEE-EEeCCCCEEEEE
Q psy12911        204 ---QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGI-VFHPVHGTLATV  279 (356)
Q Consensus       204 ---~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-~~sp~~~~l~s~  279 (356)
                         .+..++++++    +.+++++.. +.++||.++.... .+..+..+..           .+..+ +++++.-+++++
T Consensus       292 w~~~~~~~~~~~~----~~~~~~~~~-~~~~l~~~d~~~~-~~~~l~~~~~-----------~~~~~~s~~~~~~~~~~~  354 (662)
T 3azo_A          292 WTPGMRWFAPLAN----GLIAVVHGK-GAAVLGILDPESG-ELVDAAGPWT-----------EWAATLTVSGTRAVGVAA  354 (662)
T ss_dssp             CSTTCCSEEECTT----SCEEEEEBS-SSCEEEEEETTTT-EEEECCSSCC-----------EEEEEEEEETTEEEEEEE
T ss_pred             ccccCceEeEeCC----CEEEEEEEc-CccEEEEEECCCC-cEEEecCCCC-----------eEEEEEecCCCEEEEEEc
Confidence               1467888888    778888888 9999997654332 2444444433           56666 444333344455


Q ss_pred             cCCC--eEEEEEcCccee
Q psy12911        280 GSEG--TFSFWDKDARTK  295 (356)
Q Consensus       280 ~~dg--~i~iwd~~~~~~  295 (356)
                      +.+.  .|.+||+.+++.
T Consensus       355 ~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          355 SPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             ETTEEEEEEEEETTTCCE
T ss_pred             CCCCCCEEEEEECCCCce
Confidence            5554  455667666654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.74  E-value=3.1e-16  Score=143.81  Aligned_cols=243  Identities=7%  Similarity=-0.071  Sum_probs=160.6

Q ss_pred             CCCCCeeEEEecCCCCCceEEE-----EEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe--
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLI-----AGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT--   99 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~-----~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--   99 (356)
                      +|...+.+++|||||   ++||     .|+.+..|++||+.++.......+..  .....++|+|||+.|+.++.|..  
T Consensus       118 ~~~~~~~~~~~SPDG---~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~  192 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDG---KKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPS  192 (695)
T ss_dssp             SSCEEEEEEEECTTS---SEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTT
T ss_pred             CCCEEEEEEEECCCC---CEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCC
Confidence            466679999999999   8888     34445789999998843210112221  11268999999999999988766  


Q ss_pred             -----------EEEEEcCCCcee--e---ecccCCCeeEEEEEeCCCCCeEEEEECCC----eEEEEeCCCCCceEEEeC
Q psy12911        100 -----------VKCWDLASNQSM--Q---VAQHDAPVKTCHWIKAPNYTCLMTGSWDK----TLKFWDLRTPQPIMTINL  159 (356)
Q Consensus       100 -----------i~vwd~~~~~~~--~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~  159 (356)
                                 |++|++.+++..  .   ...+...+..+.|+  +||++|+.++.++    .|++||..+++.......
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~  270 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS--RDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG  270 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC--TTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred             CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC--CCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence                       999999987632  1   22355678899999  9999998887666    688887665554333333


Q ss_pred             CCe-eEEEecCCCeEEEEec----CCeEEEEeCCCCccc-cccccCcc-cccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911        160 PER-CYCADVDYPLAVVGTA----GRGIVLYQLEGKPQE-FKKTESPL-KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI  232 (356)
Q Consensus       160 ~~~-~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~-~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i  232 (356)
                      ... ...+..++. ++..+.    ++.|.+||+.++... ...+.... ...+..++++ +    +.++++...++..++
T Consensus       271 ~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~----~~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          271 VGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G----GHLSLEYLKDATSEV  344 (695)
T ss_dssp             SSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T----TEEEEEEEETTEEEE
T ss_pred             CCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C----CEEEEEEEECCEEEE
Confidence            222 222234555 555443    589999999775421 12222122 3456777777 4    578888899999999


Q ss_pred             EEeCCCCCCCcceeeee-cCCCCCCCcccccceEEEEEeCCCCEEEE----EcCCCeEEEEEcCcce
Q psy12911        233 QYVNPANPKDNFTFKCH-RSNGGAGGVQDIYAVNGIVFHPVHGTLAT----VGSEGTFSFWDKDART  294 (356)
Q Consensus       233 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~sp~~~~l~s----~~~dg~i~iwd~~~~~  294 (356)
                      |.++... .....+..+ ..           .+..++++|+++.|+.    ....++|++||+.+++
T Consensus       345 ~~~~~~g-~~~~~l~~~~~~-----------~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          345 RVATLKG-KPVRTVQLPGVG-----------AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEETTC-CEEEECCCSSSS-----------EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEeCCC-CeeEEecCCCCe-----------EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            9876421 223333322 22           5777889999977763    2345789999998765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.74  E-value=3.9e-15  Score=123.94  Aligned_cols=287  Identities=10%  Similarity=0.022  Sum_probs=184.6

Q ss_pred             EEecCCCCCceEEEEEeC-----CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc----------CCCe
Q psy12911         35 MAFSPSTLPQYFLIAGSW-----DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG----------CDKT   99 (356)
Q Consensus        35 ~~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~   99 (356)
                      ....|++   +.+++...     ++.|.+.|..+  ...+..+..-..+ . ++++|||++++++.          .++.
T Consensus        38 ~~~~pd~---~~vyV~~~~~~~~~~~V~ViD~~t--~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~  110 (386)
T 3sjl_D           38 EAPAPDA---RRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDY  110 (386)
T ss_dssp             CCCCCCT---TEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             eccCCCC---CEEEEEcCcccCCCCEEEEEECCC--CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCE
Confidence            4557888   77777754     67999999987  4455666544444 4 99999999988775          3678


Q ss_pred             EEEEEcCCCceeeeccc--------CCCeeEEEEEeCCCCCeEEEEEC--CCeEEEEeCCCCCceEEEeCCCeeEEEecC
Q psy12911        100 VKCWDLASNQSMQVAQH--------DAPVKTCHWIKAPNYTCLMTGSW--DKTLKFWDLRTPQPIMTINLPERCYCADVD  169 (356)
Q Consensus       100 i~vwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (356)
                      |.+||..+.+.+....-        ......+.++  |||++++++..  ++.|.++|+.+++.+.++..+.........
T Consensus       111 VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s--pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g  188 (386)
T 3sjl_D          111 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT--PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA  188 (386)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC--TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred             EEEEECCCCeEEEEEECCCccccccCCCCceEEEc--CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCC
Confidence            99999999987763211        2256778999  99999888864  689999999999999999876643333334


Q ss_pred             CCeEEEEecCCeEEEEeCCC-Ccccccc--ccCcccccc-eEEEee-cCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911        170 YPLAVVGTAGRGIVLYQLEG-KPQEFKK--TESPLKYQN-RCIAIF-RDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF  244 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~-~~~~~~~--~~~~~~~~i-~~~~~~-~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  244 (356)
                      ...+++.+.||.+.+.++.. +......  ........+ ....|. ++    + .++..+.+|.+++.|......+...
T Consensus       189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~d----G-~~~~vs~~g~V~v~d~~~~~~~v~~  263 (386)
T 3sjl_D          189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA----G-RLVWPTYTGKIHQIDLSSGDAKFLP  263 (386)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT----T-EEEEEBTTSEEEEEECTTSSCEECC
T ss_pred             CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCC----C-cEEEEeCCCEEEEEECCCCcceeec
Confidence            45677888899999999876 3321111  000001111 112443 33    4 3444666899999998765433333


Q ss_pred             eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC----------CCeEEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911        245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS----------EGTFSFWDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                      .+..........+. .......++++|+++.++....          .+.|.+.|+.+++.+.++.. ...+.+|++++|
T Consensus       264 ~~~~~~~~~~~~g~-~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D  341 (386)
T 3sjl_D          264 AVEALTEAERADGW-RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQD  341 (386)
T ss_dssp             CEESSCHHHHHTTE-EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSS
T ss_pred             ceeccccccccccc-cCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCC
Confidence            22200000000000 0002345778999988777642          25799999999999888763 347889999999


Q ss_pred             CC-EEEEEeccCCcCCCccCCCCCCc
Q psy12911        315 GQ-IFAYAVSYDWSKGHEHNNPNKGN  339 (356)
Q Consensus       315 ~~-~l~~~s~~d~~~~~~~~~~~~~~  339 (356)
                      ++ +|+++..  .+....++|.....
T Consensus       342 ~~~~ly~tn~--~~~~VsViD~~t~k  365 (386)
T 3sjl_D          342 EKPLLYALST--GDKTLYIHDAESGE  365 (386)
T ss_dssp             SSCEEEEEET--TTTEEEEEETTTCC
T ss_pred             CCeEEEEEcC--CCCeEEEEECCCCc
Confidence            97 6666543  13334455555443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.74  E-value=4.6e-15  Score=119.96  Aligned_cols=238  Identities=8%  Similarity=-0.100  Sum_probs=162.9

Q ss_pred             CeeEEEecCCCCCceEEE-EEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc
Q psy12911         31 SISCMAFSPSTLPQYFLI-AGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ  109 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  109 (356)
                      ...++++++++   ++++ +...++.|.+|+..+.  ........+...+.++++.++|+.+++.. ++.|.+||..+..
T Consensus        25 ~p~~i~~~~~g---~l~v~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDSAG---NVYVTSEGMYGRVVKLATGST--GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECTTC---CEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC
T ss_pred             CccceEECCCC---CEEEEccCCCCcEEEecCCCc--ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce
Confidence            67899999998   7776 5467889999997652  22111123345688999999998666655 8899999988765


Q ss_pred             eeeec-ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEEecCCeEEEE
Q psy12911        110 SMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVGTAGRGIVLY  185 (356)
Q Consensus       110 ~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~i~i~  185 (356)
                      ...+. .....+..+++.  ++++++++...++.|.+|+..+.........   ....++++.++..+++...++.|.+|
T Consensus        99 ~~~~~~~~~~~p~~i~~~--~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~  176 (270)
T 1rwi_B           99 QTVLPFDGLNYPEGLAVD--TQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL  176 (270)
T ss_dssp             CEECCCCSCSSEEEEEEC--TTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred             EeeeecCCcCCCcceEEC--CCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence            54432 233678899998  8888777777788999998665543322211   12356666667755666667899999


Q ss_pred             eCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceE
Q psy12911        186 QLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVN  265 (356)
Q Consensus       186 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  265 (356)
                      |..+........  .....+..+++.++    +.++++...++.|.+|+.+...  .......+..           .+.
T Consensus       177 ~~~~~~~~~~~~--~~~~~p~~i~~d~~----g~l~v~~~~~~~v~~~~~~~~~--~~~~~~~~~~-----------~p~  237 (270)
T 1rwi_B          177 EAESNNQVVLPF--TDITAPWGIAVDEA----GTVYVTEHNTNQVVKLLAGSTT--STVLPFTGLN-----------TPL  237 (270)
T ss_dssp             CTTTCCEEECCC--SSCCSEEEEEECTT----CCEEEEETTTSCEEEECTTCSC--CEECCCCSCS-----------CEE
T ss_pred             ecCCCceEeecc--cCCCCceEEEECCC----CCEEEEECCCCcEEEEcCCCCc--ceeeccCCCC-----------Cce
Confidence            988764322111  12256788999988    7666766678899999876432  1111111111           588


Q ss_pred             EEEEeCCCCEEEEEcCCCeEEEEEcCccee
Q psy12911        266 GIVFHPVHGTLATVGSEGTFSFWDKDARTK  295 (356)
Q Consensus       266 ~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~  295 (356)
                      +++++|+|+++++...++.|+++++...+.
T Consensus       238 ~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          238 AVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             eEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            999999999999999999999999886554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.74  E-value=1.2e-16  Score=136.57  Aligned_cols=221  Identities=12%  Similarity=0.026  Sum_probs=146.0

Q ss_pred             eeEEEEccCCCeEEEEcCC---CeEEEEEcCCCceeeecccCCCee-EEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce
Q psy12911         79 VLDVAWIDDGTKVFMAGCD---KTVKCWDLASNQSMQVAQHDAPVK-TCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI  154 (356)
Q Consensus        79 v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  154 (356)
                      +..++|+|||++|+.....   ..|.+||+.+++...+..+..... .+.|+  |+++.|+.++.++.|++||+.+++..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~s--pdg~~l~~~~~~~~l~~~d~~~~~~~  115 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIS--TDERAFFYVKNELNLMKVDLETLEEQ  115 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEEC--TTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceEC--CCCCEEEEEEcCCcEEEEECCCCCcE
Confidence            7788999999998876543   478999999988776555444433 47899  99999999999999999999988766


Q ss_pred             EEEeCCCee----------------------EEEecCCCeEEEE-----ecCCeEEEEeCCCCccccccccCcccccceE
Q psy12911        155 MTINLPERC----------------------YCADVDYPLAVVG-----TAGRGIVLYQLEGKPQEFKKTESPLKYQNRC  207 (356)
Q Consensus       155 ~~~~~~~~~----------------------~~~~~~~~~~~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~  207 (356)
                      .....+...                      ..+++++..++..     ..+..|.+||+.++......   .....+..
T Consensus       116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~---~~~~~~~~  192 (396)
T 3c5m_A          116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH---QDTAWLGH  192 (396)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE---EESSCEEE
T ss_pred             EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec---cCCccccc
Confidence            655533321                      0122333333332     35678999999876532222   24456788


Q ss_pred             EEeec-CCCCCCCeEEEeecC------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        208 IAIFR-DKKKQPAGYGLGSVE------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       208 ~~~~~-~~~~~~~~~~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                      +.|+| +    +..++..+.+      ..|.+|+++...   ...+..+..         ...+..++|+|+|++|+.++
T Consensus       193 ~~~sp~d----g~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~---------~~~~~~~~~spdg~~l~~~~  256 (396)
T 3c5m_A          193 PIYRPFD----DSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAE---------GESCTHEFWIPDGSAMAYVS  256 (396)
T ss_dssp             EEEETTE----EEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCT---------TEEEEEEEECTTSSCEEEEE
T ss_pred             ceECCCC----CCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCC---------CccccceEECCCCCEEEEEe
Confidence            99999 6    5556665543      356777765432   112211110         01478899999999877765


Q ss_pred             CC-----CeEEEEEcCcceecCCCCCCccceEEEEECC-CCCEEEEEec
Q psy12911        281 SE-----GTFSFWDKDARTKLKPSEAMDMSISTCALNH-NGQIFAYAVS  323 (356)
Q Consensus       281 ~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~s~  323 (356)
                      .+     +.|++||+.+++...... ... .. +.|+| ||+++++++.
T Consensus       257 ~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~  302 (396)
T 3c5m_A          257 YFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGC  302 (396)
T ss_dssp             EETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEEC
T ss_pred             cCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecC
Confidence            43     459999998875432211 111 23 89999 9999888653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.74  E-value=1.7e-15  Score=127.20  Aligned_cols=232  Identities=11%  Similarity=0.078  Sum_probs=151.1

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCC---Ce--EEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-------
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWD---NN--VRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-------   97 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~d---g~--i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------   97 (356)
                      ..+.+++|+|+|   ++|+.++.+   +.  |.+|++.++  .. ..+..+.. +..++|+|||+.|+.++.+       
T Consensus        59 ~~~~~~~~SpDg---~~la~~~~~~~~~~~~l~~~~~~~g--~~-~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~  131 (347)
T 2gop_A           59 ENATMPRISPDG---KKIAFMRANEEKKVSEIWVADLETL--SS-KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDF  131 (347)
T ss_dssp             ESCEEEEECTTS---SEEEEEEEETTTTEEEEEEEETTTT--EE-EEEEEESE-EEEEEECTTSSEEEEEEECCCC----
T ss_pred             ccCCCeEECCCC---CEEEEEEeccCCCcceEEEEECCCC--ce-EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCc
Confidence            467889999999   888887654   34  777777652  22 22222334 9999999999998887642       


Q ss_pred             --------------------CeEEEEEcCCCce-eeecccCCCeeEEEEEeCCCCCeEEEEECCC-------eEEEEeCC
Q psy12911         98 --------------------KTVKCWDLASNQS-MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK-------TLKFWDLR  149 (356)
Q Consensus        98 --------------------g~i~vwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~  149 (356)
                                          ..|.+||+.+++. ..+.. . .+..+.|+  |++ +++++..++       ...+|.+.
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          132 IFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             -----CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred             EEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC
Confidence                                5799999999887 44444 4 88999999  999 777776542       33444433


Q ss_pred             CCCceEEEeCCCeeEEEecCCCeEEEEecC--------CeEEEEeCCCCccccccccCcccccceE-EEeecCCCCCCCe
Q psy12911        150 TPQPIMTINLPERCYCADVDYPLAVVGTAG--------RGIVLYQLEGKPQEFKKTESPLKYQNRC-IAIFRDKKKQPAG  220 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~  220 (356)
                      +++....... .....+++++..++.++.+        ..|.+||  ++.  .......+...+.. +.|+ +    + .
T Consensus       207 ~~~~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~--~~~l~~~~~~~~~~~~~~s-d----g-~  275 (347)
T 2gop_A          207 DGKEEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE--VMGILDEVDRGVGQAKIKD-G----K-V  275 (347)
T ss_dssp             TTEEEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC--EEESSTTCCSEEEEEEEET-T----E-E
T ss_pred             CCceEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCc--eEeccccCCcccCCccEEc-C----c-E
Confidence            4443322222 3344457888888776643        4688888  332  12222234456665 8887 7    6 8


Q ss_pred             EEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeE-EEEEcCcceecCCC
Q psy12911        221 YGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTF-SFWDKDARTKLKPS  299 (356)
Q Consensus       221 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i-~iwd~~~~~~~~~~  299 (356)
                      +++++.++.+++| ++.  .+. ..+..+..           .|.+++|+|  .++++++.++.. .+|.+. ++ ...+
T Consensus       276 ~~~~~~~~~~~l~-~~~--g~~-~~~~~~~~-----------~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~l  336 (347)
T 2gop_A          276 YFTLFEEGSVNLY-IWD--GEI-KPIAKGRH-----------WIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQL  336 (347)
T ss_dssp             EEEEEETTEEEEE-EES--SSE-EEEECSSS-----------EEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEEC
T ss_pred             EEEEecCCcEEEE-EcC--Cce-EEEecCCC-----------eEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEe
Confidence            8899999999999 872  232 33333333           789999999  677777766654 677665 43 3334


Q ss_pred             CCCc
Q psy12911        300 EAMD  303 (356)
Q Consensus       300 ~~~~  303 (356)
                      ..|.
T Consensus       337 t~~n  340 (347)
T 2gop_A          337 TDYN  340 (347)
T ss_dssp             CCTT
T ss_pred             cccc
Confidence            4443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.73  E-value=3.6e-14  Score=119.66  Aligned_cols=286  Identities=7%  Similarity=-0.060  Sum_probs=177.4

Q ss_pred             ecCCCCCceEEEEEeC--CC---eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc----------CCCeEE
Q psy12911         37 FSPSTLPQYFLIAGSW--DN---NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG----------CDKTVK  101 (356)
Q Consensus        37 ~~~~~~~~~~l~~~~~--dg---~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~  101 (356)
                      ..|++   +++++...  ..   .|.+||..++  .....+.....+  .++++|||++++.+.          .++.|.
T Consensus        28 ~~~~~---~~~yv~~~~~~~~~~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~  100 (373)
T 2mad_H           28 PGADG---RRSYINLPAHHSAIIQQWVLDAGSG--SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             CCCCC---CEEEEeCCcccCCccEEEEEECCCC--eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEE
Confidence            44666   66666653  22   8899999873  344555543344  999999999999885          367899


Q ss_pred             EEEcCCCceeeeccc--------CCCeeEEEEEeCCCCCeEEEEEC--CCeEEEEeCCCCCceEE-EeCCCeeEEEecCC
Q psy12911        102 CWDLASNQSMQVAQH--------DAPVKTCHWIKAPNYTCLMTGSW--DKTLKFWDLRTPQPIMT-INLPERCYCADVDY  170 (356)
Q Consensus       102 vwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~  170 (356)
                      +||..+.+.+....-        ......+.|+  |||++|+++..  ++.|.++| .+++.+.. +..+..........
T Consensus       101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s--pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~  177 (373)
T 2mad_H          101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANT--PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAP  177 (373)
T ss_pred             EEECCCCcEEEEEECCCccccccCCCccceEEC--CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCC
Confidence            999998776652211        1234578999  99999998874  47899999 99999888 77665433333333


Q ss_pred             CeEEEEecCCeEEEEeCCCCccccccc--c-Cccccc-ceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee
Q psy12911        171 PLAVVGTAGRGIVLYQLEGKPQEFKKT--E-SPLKYQ-NRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       171 ~~~~~~~~d~~i~i~d~~~~~~~~~~~--~-~~~~~~-i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~  246 (356)
                      ..+++.+.||.+.++|. ++.......  . ...... .....+.++    +..++..+..+.+.+.|+.......+..+
T Consensus       178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~v~vid~~~~~~~v~~~~  252 (373)
T 2mad_H          178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK----SGRIVWPVYSGKILQADISAAGATNKAPI  252 (373)
T ss_pred             ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec----CCEEEEEcCCceEEEEeccCCcceEeeee
Confidence            46667788999999999 554321110  0 000111 112344455    33444445778888888865432222222


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC----------CCeEEEEEcCcceecCCCCCCccceEEEEECCCCC
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS----------EGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQ  316 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  316 (356)
                      ..........+. .......++++|+++.++.+..          ++.|.++|+.+++.+.++.. .....+++|+|||+
T Consensus       253 ~~~~~~~~~~~~-~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~  330 (373)
T 2mad_H          253 DALSGGRKADTW-RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGG  330 (373)
T ss_pred             eecCCcccccce-ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCC
Confidence            211100000000 0013445789999987777543          35899999999999888853 33578999999999


Q ss_pred             -EEEEEeccCCcCCCccCCCCCCcee
Q psy12911        317 -IFAYAVSYDWSKGHEHNNPNKGNAI  341 (356)
Q Consensus       317 -~l~~~s~~d~~~~~~~~~~~~~~~~  341 (356)
                       +++++...  +....++|....+.+
T Consensus       331 ~~l~v~~~~--~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          331 PDLYALSAG--TEVLHIYDAGAGDQD  354 (373)
T ss_pred             eEEEEEcCC--CCeEEEEECCCCCEE
Confidence             56665421  234445555544333

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.73  E-value=8.8e-15  Score=121.68  Aligned_cols=252  Identities=6%  Similarity=-0.050  Sum_probs=166.7

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ  109 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  109 (356)
                      .....+.+.. +   .+.++...++.|.+||..+.  ..+..+. .......++++++++..++...++.|.+||..+++
T Consensus        44 ~~~~~i~~~~-~---~lyv~~~~~~~v~viD~~t~--~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~  116 (328)
T 3dsm_A           44 DVAQSMVIRD-G---IGWIVVNNSHVIFAIDINTF--KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE  116 (328)
T ss_dssp             SCEEEEEEET-T---EEEEEEGGGTEEEEEETTTC--CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE
T ss_pred             ccceEEEEEC-C---EEEEEEcCCCEEEEEECccc--EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe
Confidence            3456777753 3   66667777899999999873  3334453 34678899999998544444378999999999988


Q ss_pred             eeeecccCC------CeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCCCceEEEeCCCe--eEEEecCCCeEEEEecC-
Q psy12911        110 SMQVAQHDA------PVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTPQPIMTINLPER--CYCADVDYPLAVVGTAG-  179 (356)
Q Consensus       110 ~~~~~~~~~------~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d-  179 (356)
                      .........      ....+++   .++.++++.. .++.|.++|+.+++.+..+.....  .+.++.++.+++++..+ 
T Consensus       117 ~~~~i~~g~~~~~~~~p~~i~~---~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~  193 (328)
T 3dsm_A          117 ITGYIECPDMDMESGSTEQMVQ---YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGY  193 (328)
T ss_dssp             EEEEEECTTCCTTTCBCCCEEE---ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBC
T ss_pred             EEEEEEcCCccccCCCcceEEE---ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCc
Confidence            765322222      5567776   3444444443 488999999999998888875443  45556666655555443 


Q ss_pred             ---------CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeec
Q psy12911        180 ---------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHR  250 (356)
Q Consensus       180 ---------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  250 (356)
                               +.|.++|..+...... ...+.......++++|+    +..+.++..  .|.+||...........+....
T Consensus       194 ~~~~~~~~~~~v~~id~~t~~v~~~-~~~~~g~~p~~la~~~d----~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~  266 (328)
T 3dsm_A          194 EGSPYGYEAPSLYRIDAETFTVEKQ-FKFKLGDWPSEVQLNGT----RDTLYWINN--DIWRMPVEADRVPVRPFLEFRD  266 (328)
T ss_dssp             TTCSSCBCCCEEEEEETTTTEEEEE-EECCTTCCCEEEEECTT----SCEEEEESS--SEEEEETTCSSCCSSCSBCCCS
T ss_pred             cCCccccCCceEEEEECCCCeEEEE-EecCCCCCceeEEEecC----CCEEEEEcc--EEEEEECCCCceeeeeeecCCC
Confidence                     7899999987753322 22122346789999998    666766654  7888888655321111111111


Q ss_pred             CCCCCCCcccccceEEEEEeC-CCCEEEEE----cCCCeEEEEEcCcceecCCCCCCccceEEEEE
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHP-VHGTLATV----GSEGTFSFWDKDARTKLKPSEAMDMSISTCAL  311 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp-~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  311 (356)
                      .           ....++++| ++.++++.    ..++.|.+||.. ++.+.++.. ......++|
T Consensus       267 ~-----------~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~  319 (328)
T 3dsm_A          267 T-----------KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW  319 (328)
T ss_dssp             S-----------CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred             C-----------ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence            1           578999999 55666676    678999999998 888877753 223355555

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.72  E-value=6.8e-15  Score=118.87  Aligned_cols=216  Identities=14%  Similarity=0.057  Sum_probs=161.5

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCC-cceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-eccc-CCCee
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS-EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQH-DAPVK  121 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~-~~~v~  121 (356)
                      ++|++++.|+.|.+||.++ + +.+..+..+. ..+.++.++|+|++++  +.++.|..||. +++.+. +..+ ...+.
T Consensus         6 ~~lv~~~~~~~v~~~d~~t-G-~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDT-K-EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             EEEEECTTCSEEEEEETTT-T-EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             cEEEeeCCCCEEEEEECCC-C-eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            7999999999999999877 3 3345666555 5789999999999888  34788999999 677665 3333 34678


Q ss_pred             EEEEEeCCCCCeEEEEEC-CCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCc
Q psy12911        122 TCHWIKAPNYTCLMTGSW-DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESP  200 (356)
Q Consensus       122 ~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  200 (356)
                      ++.+.  ++|+++++.+. ++.|..+|. +++.+..+......                                  . .
T Consensus        81 ~~~~~--~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~----------------------------------~-~  122 (276)
T 3no2_A           81 TARIL--PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI----------------------------------E-R  122 (276)
T ss_dssp             EEEEC--TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC----------------------------------S-S
T ss_pred             ccEEC--CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC----------------------------------C-c
Confidence            88888  99999999887 777888874 67776665421100                                  0 0


Q ss_pred             ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        201 LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       201 ~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                      .......++..++    +.++++...++.|..||.+ +  +.++++....            ...++...++|+++++++
T Consensus       123 ~~~~~~~v~~~~~----G~~lv~~~~~~~v~~~d~~-G--~~~w~~~~~~------------~~~~~~~~~~g~~~v~~~  183 (276)
T 3no2_A          123 PHAQFRQINKNKK----GNYLVPLFATSEVREIAPN-G--QLLNSVKLSG------------TPFSSAFLDNGDCLVACG  183 (276)
T ss_dssp             GGGSCSCCEECTT----SCEEEEETTTTEEEEECTT-S--CEEEEEECSS------------CCCEEEECTTSCEEEECB
T ss_pred             ccccccCceECCC----CCEEEEecCCCEEEEECCC-C--CEEEEEECCC------------CccceeEcCCCCEEEEeC
Confidence            1112344556677    7888888899999999876 4  6677766542            355678889999999999


Q ss_pred             CCCeEEEEEcCcceecCCCCCCc------cceEEEEECCCCCEEEEEe
Q psy12911        281 SEGTFSFWDKDARTKLKPSEAMD------MSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       281 ~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~s  322 (356)
                      .+++|..+|..+|+.+.++..+.      ..+..++..++|..+++.+
T Consensus       184 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          184 DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            89999999999999887775332      2478999999999998875

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.71  E-value=4.4e-15  Score=136.21  Aligned_cols=263  Identities=10%  Similarity=-0.076  Sum_probs=164.2

Q ss_pred             cCCCCCceEEEEEeCCC---eEEEEecc--CCCceeeee----eccCCcceeEEEEccCCCeEE-----EEcCCCeEEEE
Q psy12911         38 SPSTLPQYFLIAGSWDN---NVRCWEVE--PNGKTIPKS----MQGMSEPVLDVAWIDDGTKVF-----MAGCDKTVKCW  103 (356)
Q Consensus        38 ~~~~~~~~~l~~~~~dg---~i~vw~~~--~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~-----~~~~dg~i~vw  103 (356)
                      +|+|   .+++....++   .-.||...  .+....+..    -.+|...+..++|||||++||     .|+.+..|++|
T Consensus        76 ~~dG---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~  152 (695)
T 2bkl_A           76 SRRN---GRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVI  152 (695)
T ss_dssp             EEET---TEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEE
T ss_pred             EEEC---CEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEE
Confidence            3777   7776665543   34556544  322222111    124566799999999999998     34445789999


Q ss_pred             EcCCCcee-eecccCCCeeEEEEEeCCCCCeEEEEECCCe-------------EEEEeCCCCCc--eEEEeC--C-C--e
Q psy12911        104 DLASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKT-------------LKFWDLRTPQP--IMTINL--P-E--R  162 (356)
Q Consensus       104 d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~~--~~~~~~--~-~--~  162 (356)
                      |+.+++.+ ...........++|+  |||+.|+.++.|..             |++|++.+++.  ...+..  + .  .
T Consensus       153 dl~tg~~~~~~~~~~~~~~~~~ws--pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~  230 (695)
T 2bkl_A          153 DVDSGEWSKVDVIEGGKYATPKWT--PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL  230 (695)
T ss_dssp             ETTTCCBCSSCCBSCCTTCCCEEC--TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred             ECCCCCCcCCcccCcccccceEEe--cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence            99999876 211111112688999  99999999998776             99999988763  233332  2 1  2


Q ss_pred             eEEEecCCCeEEEEecCC----eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee---cCCeEEEEEe
Q psy12911        163 CYCADVDYPLAVVGTAGR----GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS---VEGRVAIQYV  235 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~dg~i~i~~~  235 (356)
                      ...+++++..++..+.++    .|.+++..++.  ...+. ..........+ ++    +.+++...   .++.|.+|++
T Consensus       231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--~~~l~-~~~~~~~~~~~-~~----g~l~~~s~~~~~~~~l~~~d~  302 (695)
T 2bkl_A          231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--FRLLV-KGVGAKYEVHA-WK----DRFYVLTDEGAPRQRVFEVDP  302 (695)
T ss_dssp             EEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--CEEEE-ECSSCCEEEEE-ET----TEEEEEECTTCTTCEEEEEBT
T ss_pred             EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--eEEee-cCCCceEEEEe-cC----CcEEEEECCCCCCCEEEEEeC
Confidence            456777888888777655    66677654432  12222 12223344444 55    45334333   2577888887


Q ss_pred             CCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC-cceecCCCCCC-ccceEEEEECC
Q psy12911        236 NPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD-ARTKLKPSEAM-DMSISTCALNH  313 (356)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~s~  313 (356)
                      +.........+..+...         ..+..++|+ ++.++++...|+..++|.+. +++.+..+..+ .+.|..++++|
T Consensus       303 ~~~~~~~~~~l~~~~~~---------~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~  372 (695)
T 2bkl_A          303 AKPARASWKEIVPEDSS---------ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLE  372 (695)
T ss_dssp             TBCSGGGCEEEECCCSS---------CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCT
T ss_pred             CCCCccCCeEEecCCCC---------CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCC
Confidence            65421112334333210         157888888 67888999999988888665 35555555544 66788899999


Q ss_pred             CCCEEEEEec
Q psy12911        314 NGQIFAYAVS  323 (356)
Q Consensus       314 ~~~~l~~~s~  323 (356)
                      +++.|+...+
T Consensus       373 d~~~l~~~~s  382 (695)
T 2bkl_A          373 DLDDAYYVFT  382 (695)
T ss_dssp             TCSEEEEEEE
T ss_pred             CCCEEEEEEc
Confidence            9987775543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=6.5e-14  Score=116.86  Aligned_cols=243  Identities=10%  Similarity=-0.015  Sum_probs=158.6

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC---
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD---   97 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---   97 (356)
                      .+..+..+...+.+++|++++   ++++++..++.|.+||.+++.  .......+...+.+++++++|+++++...+   
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g---~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~  110 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQG---QLFLLDVFEGNIFKINPETKE--IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKS  110 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTS---CEEEEETTTCEEEEECTTTCC--EEEEEECSSSSEEEEEECTTSCEEEEECTTSSS
T ss_pred             eeEEEeccCccccCcEECCCC---CEEEEECCCCEEEEEeCCCCc--EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCC
Confidence            344555677788999999998   888888889999999987632  222222466789999999999877777666   


Q ss_pred             -CeEEEEEcCCCceeeec---ccCCCeeEEEEEeCCCCCeEEEEEC------CCeEEEEeCCCCCceEEEeC--CCeeEE
Q psy12911         98 -KTVKCWDLASNQSMQVA---QHDAPVKTCHWIKAPNYTCLMTGSW------DKTLKFWDLRTPQPIMTINL--PERCYC  165 (356)
Q Consensus        98 -g~i~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~--~~~~~~  165 (356)
                       +.|.+||..+++...+.   .+...+.+++++  ++++++++...      .+.|..+|..+++.......  ....++
T Consensus       111 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d--~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~  188 (333)
T 2dg1_A          111 TGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD--SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIA  188 (333)
T ss_dssp             CCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC--TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEE
T ss_pred             CceEEEEeCCCCEEEEEEccCccCCcccceEEC--CCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceE
Confidence             68999999887765321   244578999999  89887776553      35677777665554332221  223456


Q ss_pred             EecCCCeEEEE-ecCCeEEEEeCCCCccccc----c-c-cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        166 ADVDYPLAVVG-TAGRGIVLYQLEGKPQEFK----K-T-ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       166 ~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~----~-~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                      +++++..++++ ..++.|.+||+........    . . .......+..+++.++    +.++++...++.|.+|+.+. 
T Consensus       189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~----G~l~v~~~~~~~v~~~d~~g-  263 (333)
T 2dg1_A          189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD----DNLYVAMYGQGRVLVFNKRG-  263 (333)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT----CCEEEEEETTTEEEEECTTS-
T ss_pred             ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCC----CCEEEEEcCCCEEEEECCCC-
Confidence            67777756554 5678999999964211110    0 0 0011135678899988    67777777788999998742 


Q ss_pred             CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC
Q psy12911        239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE  282 (356)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d  282 (356)
                        +.+..+..+...     ..+...+.+++|+|+++.|+.++.+
T Consensus       264 --~~~~~~~~~~~~-----~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          264 --YPIGQILIPGRD-----EGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             --CEEEEEECTTGG-----GTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             --CEEEEEEcCCCc-----cccccCcceEEECCCCCEEEEEeCc
Confidence              333333322100     0000137889999998777655554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.69  E-value=3.8e-13  Score=110.27  Aligned_cols=265  Identities=9%  Similarity=-0.060  Sum_probs=177.0

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  106 (356)
                      .....+.++++.++|   .+.++...++.|.+|+.. + ......+......+.++++.++++..++...++.|..||..
T Consensus        17 ~~~~~p~~i~~d~~g---~l~v~~~~~~~v~~~~~~-~-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           17 IPDSGPYGITSSEDG---KVWFTQHKANKISSLDQS-G-RIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             STTCCEEEEEECTTS---CEEEEETTTTEEEEECTT-S-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCCCCcceeeECCCC---CEEEEcCCCCeEEEECCC-C-ceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence            345688999999998   777777678999999987 2 22222333344678999999999877777668899999988


Q ss_pred             CCceeee--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC---C--eeEEEecCCCeEEEEecC
Q psy12911        107 SNQSMQV--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP---E--RCYCADVDYPLAVVGTAG  179 (356)
Q Consensus       107 ~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~d  179 (356)
                       ++...+  ......+.++++.  +++.++++...++.|..+|.. ++.. .+...   .  ..+.++..+...++...+
T Consensus        92 -g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  166 (300)
T 2qc5_A           92 -GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQN  166 (300)
T ss_dssp             -SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred             -CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCC
Confidence             655432  2234678899998  888887777668899999987 5543 33222   2  234455556655555557


Q ss_pred             CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcc
Q psy12911        180 RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQ  259 (356)
Q Consensus       180 ~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (356)
                      +.|..+|.. +..... ........+..+++.++    +..+++....+.|.+++...   . ...+.....        
T Consensus       167 ~~i~~~~~~-g~~~~~-~~~~~~~~~~~i~~d~~----g~l~v~~~~~~~i~~~~~~g---~-~~~~~~~~~--------  228 (300)
T 2qc5_A          167 NSIGRITNT-GKLEEY-PLPTNAAAPVGITSGND----GALWFVEIMGNKIGRITTTG---E-ISEYDIPTP--------  228 (300)
T ss_dssp             TEEEEECTT-CCEEEE-ECSSTTCCEEEEEECTT----SSEEEEETTTTEEEEECTTC---C-EEEEECSST--------
T ss_pred             CeEEEECCC-CcEEEe-eCCCCCCCcceEEECCC----CCEEEEccCCCEEEEEcCCC---c-EEEEECCCC--------
Confidence            899999984 322211 11122345788888887    66666666677888887622   1 111111100        


Q ss_pred             cccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceec-CCCCCCccceEEEEECCCCCEEEEE
Q psy12911        260 DIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKL-KPSEAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       260 ~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                       ...+.+++++++|++.++...++.|..||.. ++.. ..+......+.+++++++|++.++.
T Consensus       229 -~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  289 (300)
T 2qc5_A          229 -NARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFAL  289 (300)
T ss_dssp             -TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred             -CCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEc
Confidence             0158899999999988887778999999984 4432 2233334568899999999866654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.67  E-value=1.7e-13  Score=114.15  Aligned_cols=267  Identities=10%  Similarity=-0.006  Sum_probs=169.2

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEe----------CCCeEEEEeccCCCceeeeeeccC-------Cccee
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGS----------WDNNVRCWEVEPNGKTIPKSMQGM-------SEPVL   80 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~-------~~~v~   80 (356)
                      ..+.+..+..-..+  .++++|+|   ++|++++          .++.|.+||..+.  .....+...       .....
T Consensus        68 t~~v~~~I~vG~~P--~va~spDG---~~lyVan~~~~r~~~G~~~~~VsviD~~t~--~v~~~I~v~~g~r~~~g~~P~  140 (386)
T 3sjl_D           68 AGRVIGMIDGGFLP--NPVVADDG---SFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPRFLVGTYPW  140 (386)
T ss_dssp             TTEEEEEEEECSSC--EEEECTTS---SCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGG
T ss_pred             CCeEEEEEECCCCC--cEEECCCC---CEEEEEcccccccccCCCCCEEEEEECCCC--eEEEEEECCCccccccCCCCc
Confidence            33444444433334  49999999   8777765          3678999999883  333444211       12466


Q ss_pred             EEEEccCCCeEEEEcC--CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-CCceEEE
Q psy12911         81 DVAWIDDGTKVFMAGC--DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-PQPIMTI  157 (356)
Q Consensus        81 ~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~  157 (356)
                      .++|+|||++++++..  ++.|.++|+.+++.+....-.+ . ...+.  ...+.+++.+.||.+.+.++.+ ++.....
T Consensus       141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~-~~~~P--~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~  216 (386)
T 3sjl_D          141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C-YHIFP--TAPDTFFMHCRDGSLAKVAFGTEGTPEITH  216 (386)
T ss_dssp             GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E-EEEEE--EETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred             eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c-ceeec--CCCceeEEECCCCCEEEEECCCCCeEEEee
Confidence            7999999999988764  6899999999999876443222 1 22232  4456777888899999999976 5553322


Q ss_pred             eCCC-----ee---EEEecCCCeEEEEecCCeEEEEeCCCCccccc-cc---------cCcccccceEEEeecCCCCCCC
Q psy12911        158 NLPE-----RC---YCADVDYPLAVVGTAGRGIVLYQLEGKPQEFK-KT---------ESPLKYQNRCIAIFRDKKKQPA  219 (356)
Q Consensus       158 ~~~~-----~~---~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~---------~~~~~~~i~~~~~~~~~~~~~~  219 (356)
                      ....     .+   ..+......++..+.+|.+.+.|+.+...... ..         ..-.......++++++    +.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~----~~  292 (386)
T 3sjl_D          217 TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA----LD  292 (386)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT----TT
T ss_pred             cceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC----CC
Confidence            1110     11   12221223455567789999999977642111 11         0011234456777888    56


Q ss_pred             eEEEeec----------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEEE-cCCCeEEE
Q psy12911        220 GYGLGSV----------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATV-GSEGTFSF  287 (356)
Q Consensus       220 ~~~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~-~~dg~i~i  287 (356)
                      .+++...          .+.|.++|....  +.+..+....            .+..|+++||++ +|+++ ..++.|.+
T Consensus       293 ~lyV~~~~~~~~~hk~~~~~V~viD~~t~--kv~~~i~vg~------------~~~~lavs~D~~~~ly~tn~~~~~VsV  358 (386)
T 3sjl_D          293 RIYLLVDQRDEWRHKTASRFVVVLDAKTG--ERLAKFEMGH------------EIDSINVSQDEKPLLYALSTGDKTLYI  358 (386)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTC--CEEEEEEEEE------------EECEEEECSSSSCEEEEEETTTTEEEE
T ss_pred             eEEEEeccccccccCCCCCEEEEEECCCC--eEEEEEECCC------------CcceEEECCCCCeEEEEEcCCCCeEEE
Confidence            6666543          134556555544  6677766544            588999999996 66654 56899999


Q ss_pred             EEcCcceecCCCCCCccceEEEEECCC
Q psy12911        288 WDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       288 wd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                      +|..+++.+.++..- +.-+.+.+++|
T Consensus       359 iD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          359 HDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             EETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             EECCCCcEEEEecCC-CCCceeEECCc
Confidence            999999998877643 22345666665

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.67  E-value=4.4e-14  Score=119.73  Aligned_cols=279  Identities=7%  Similarity=-0.008  Sum_probs=178.1

Q ss_pred             eEEEEEeC-C----CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc----------CCCeEEEEEcCCCc
Q psy12911         45 YFLIAGSW-D----NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG----------CDKTVKCWDLASNQ  109 (356)
Q Consensus        45 ~~l~~~~~-d----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~  109 (356)
                      +.+++... +    +.|.++|..+  ...+..+..-..+  .++++||+++|+++.          .++.|.++|..+.+
T Consensus        85 ~~vyV~n~~~~~~~~~VsVID~~t--~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           85 RRVYIQDPAHFAAITQQFVIDGST--GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CEEEEECCCcCCCCCeEEEEECCC--CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            55555544 2    6999999988  4455666544455  899999999988876          36789999999998


Q ss_pred             eeeeccc--------CCCeeEEEEEeCCCCCeEEEEEC--CCeEEEEeCCCCCceEEEeCCCeeEEEecC-CCeEEEEec
Q psy12911        110 SMQVAQH--------DAPVKTCHWIKAPNYTCLMTGSW--DKTLKFWDLRTPQPIMTINLPERCYCADVD-YPLAVVGTA  178 (356)
Q Consensus       110 ~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  178 (356)
                      .+....-        ......+.++  +||++++++..  ++.|.+.|+.+++.+.++..+... .+.+. ...+++.+.
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~s--pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~-~~~p~g~~~~v~~~~  237 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALT--PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCY-HIFPASPTVFYMNCR  237 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEEC--TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-EEEEEETTEEEEEET
T ss_pred             EEEEEECCCccccccCCCcceEEEc--CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCce-eeccCCCcEEEEEcC
Confidence            7753211        2345678999  99999998874  578999999999999999876542 23333 356667778


Q ss_pred             CCeEEEEeCCCCccccc---cccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        179 GRGIVLYQLEGKPQEFK---KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      ||.+.+.+...+.....   .+..........+.+.++    +..++..+..+.+.+.|........+..+.........
T Consensus       238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~d----g~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~  313 (426)
T 3c75_H          238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLR----SGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERA  313 (426)
T ss_dssp             TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTT----TCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGG
T ss_pred             CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCC----CCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccc
Confidence            89888888854432211   011000111123455666    56666667788999999865432111111100000000


Q ss_pred             CCcccccceEEEEEeCCCCEEEEEcC----------CCeEEEEEcCcceecCCCCCCccceEEEEECCCCC-EEEEEecc
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLATVGS----------EGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQ-IFAYAVSY  324 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~s~~  324 (356)
                      .+ ........++++|+++.+++...          ++.|.+.|..+.+.+.++.. .....+++|+|||+ +++++...
T Consensus       314 ~g-~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~  391 (426)
T 3c75_H          314 DD-WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSAG  391 (426)
T ss_dssp             GT-EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETT
T ss_pred             cc-cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCC
Confidence            00 00002234789999987766542          35799999999999988863 23578999999999 77777632


Q ss_pred             CCcCCCccCCCCCC
Q psy12911        325 DWSKGHEHNNPNKG  338 (356)
Q Consensus       325 d~~~~~~~~~~~~~  338 (356)
                        +....++|....
T Consensus       392 --s~~VsVID~~t~  403 (426)
T 3c75_H          392 --TQTLHIYDAATG  403 (426)
T ss_dssp             --TTEEEEEETTTC
T ss_pred             --CCeEEEEECCCC
Confidence              233444554433

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=1e-13  Score=112.04  Aligned_cols=225  Identities=11%  Similarity=-0.039  Sum_probs=148.3

Q ss_pred             ceeEEEEccCCCeEE-EEcCCCeEEEEEcCCCceeee-cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceE
Q psy12911         78 PVLDVAWIDDGTKVF-MAGCDKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIM  155 (356)
Q Consensus        78 ~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  155 (356)
                      ...+++++++|+.++ +...++.|.+|+..+...... ..+...+.++++.  ++++++++.. ++.|.+||...... .
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~--~~g~l~v~~~-~~~i~~~d~~~~~~-~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD--GAGTVYVTDF-NNRVVTLAAGSNNQ-T  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEEC--TTCCEEEEET-TTEEEEECTTCSCC-E
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEEC--CCCCEEEEcC-CCEEEEEeCCCceE-e
Confidence            678999999998666 446789999999876554332 2334568889998  8888666555 88999999876543 3


Q ss_pred             EEeCC--C--eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEE
Q psy12911        156 TINLP--E--RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVA  231 (356)
Q Consensus       156 ~~~~~--~--~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~  231 (356)
                      .+...  .  ..+.++.++..+++...++.|.+|+..+......  .......+..+++.++    +.++++...++.|.
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~----g~l~v~~~~~~~i~  174 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTGLNDPDGVAVDNS----GNVYVTDTDNNRVV  174 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--CCCSCCSCCCEEECTT----CCEEEEEGGGTEEE
T ss_pred             eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--ccccCCCceeEEEeCC----CCEEEEECCCCEEE
Confidence            33221  2  2445555666555556788999997655432211  1112245788999988    67777767788999


Q ss_pred             EEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEE
Q psy12911        232 IQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCAL  311 (356)
Q Consensus       232 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  311 (356)
                      +|+.+...  .......+..           .+..++++++|.++++...++.|.+|+............+...+.++++
T Consensus       175 ~~~~~~~~--~~~~~~~~~~-----------~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~  241 (270)
T 1rwi_B          175 KLEAESNN--QVVLPFTDIT-----------APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV  241 (270)
T ss_dssp             EECTTTCC--EEECCCSSCC-----------SEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEE
T ss_pred             EEecCCCc--eEeecccCCC-----------CceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEE
Confidence            99876542  1111111111           5889999999988888888899999998765433322233456899999


Q ss_pred             CCCCCEEEEEeccC
Q psy12911        312 NHNGQIFAYAVSYD  325 (356)
Q Consensus       312 s~~~~~l~~~s~~d  325 (356)
                      +++|+++++...++
T Consensus       242 ~~~g~l~v~~~~~~  255 (270)
T 1rwi_B          242 DSDRTVYVADRGND  255 (270)
T ss_dssp             CTTCCEEEEEGGGT
T ss_pred             CCCCCEEEEECCCC
Confidence            99999777765443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.65  E-value=1.9e-12  Score=109.11  Aligned_cols=250  Identities=9%  Similarity=-0.085  Sum_probs=159.6

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEe----------CCCeEEEEeccCCCceeeeeeccC-------CcceeE
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGS----------WDNNVRCWEVEPNGKTIPKSMQGM-------SEPVLD   81 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~-------~~~v~~   81 (356)
                      .+.+..+.....+  .++++||+   ++|+++.          .++.|.+||..+.  .....+..-       ......
T Consensus        57 ~~~~~~i~~g~~p--~i~~spDg---~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--~~~~~i~~~~~~~~~~g~~p~~  129 (373)
T 2mad_H           57 GSILGHVNGGFLP--NPVAAHSG---SEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVGPYSWM  129 (373)
T ss_pred             CeEEEEecCCCCC--CeEECCCC---CEEEEEeccccccccCCCCCeEEEEECCCC--cEEEEEECCCccccccCCCccc
Confidence            3344444433333  99999999   8888886          3678999999763  222333211       123458


Q ss_pred             EEEccCCCeEEEEcC--CCeEEEEEcCCCceeee-cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe
Q psy12911         82 VAWIDDGTKVFMAGC--DKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN  158 (356)
Q Consensus        82 ~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  158 (356)
                      ++|+|||++|+++..  ++.|.++| .+++.+.. ......   +.+.| ...+.+++.+.||.+.++|. +++.+....
T Consensus       130 ~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~-~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~  203 (373)
T 2mad_H          130 NANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHP-GAPSTFYLLCAQGGLAKTDH-AGGAAGAGL  203 (373)
T ss_pred             eEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEe-CCCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence            999999999998874  57899999 99887655 443332   34442 23355677778999999999 877664332


Q ss_pred             -----CCCee----EEEecCCCeEEEEecCCeEEEEeCCCCcccccc-cc---------CcccccceEEEeecCCCCCCC
Q psy12911        159 -----LPERC----YCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKK-TE---------SPLKYQNRCIAIFRDKKKQPA  219 (356)
Q Consensus       159 -----~~~~~----~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~---------~~~~~~i~~~~~~~~~~~~~~  219 (356)
                           .....    ......+..++..+..+.+.+.|+......... ..         .........++++|+    +.
T Consensus       204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d----~~  279 (373)
T 2mad_H          204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS----SD  279 (373)
T ss_pred             ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC----CC
Confidence                 11111    112333444454557789999998765321111 00         001122344778888    55


Q ss_pred             eEEEeec----------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEEEc-CCCeEEE
Q psy12911        220 GYGLGSV----------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVG-SEGTFSF  287 (356)
Q Consensus       220 ~~~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~-~dg~i~i  287 (356)
                      .+.++..          .+.|.++|....  +.+.++....            ....++|+|||+ +++++. .++.|.+
T Consensus       280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~--~vv~~i~~g~------------~p~~i~~s~Dg~~~l~v~~~~~~~V~V  345 (373)
T 2mad_H          280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVG--QTSSQISLGH------------DVDAISVAQDGGPDLYALSAGTEVLHI  345 (373)
T ss_pred             EEEEEeccCCcccccCCCCeEEEEECCCC--EEEEEEECCC------------CcCeEEECCCCCeEEEEEcCCCCeEEE
Confidence            6666543          356777777654  5555664332            478999999998 777777 5899999


Q ss_pred             EEcCcceecCCC
Q psy12911        288 WDKDARTKLKPS  299 (356)
Q Consensus       288 wd~~~~~~~~~~  299 (356)
                      +|+.+++.+.++
T Consensus       346 iD~~t~~vv~~i  357 (373)
T 2mad_H          346 YDAGAGDQDQST  357 (373)
T ss_pred             EECCCCCEEeee
Confidence            999999988773

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.65  E-value=5.1e-14  Score=130.11  Aligned_cols=261  Identities=11%  Similarity=-0.021  Sum_probs=161.6

Q ss_pred             cCCCCCceEEEEEeCCCe---EEEEeccCC---Cceeeee------eccCCcceeEEEEccCCCeEEEEcCC-----CeE
Q psy12911         38 SPSTLPQYFLIAGSWDNN---VRCWEVEPN---GKTIPKS------MQGMSEPVLDVAWIDDGTKVFMAGCD-----KTV  100 (356)
Q Consensus        38 ~~~~~~~~~l~~~~~dg~---i~vw~~~~~---~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i  100 (356)
                      +|+|   ++++....++.   -.+|.....   +......      -.+|...+..++|||||++|+.++.+     ..|
T Consensus       115 ~pdG---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i  191 (741)
T 1yr2_A          115 QRRG---ASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTV  191 (741)
T ss_dssp             EEET---TEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEE
T ss_pred             EEEC---CEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEE
Confidence            4888   77776654433   566665432   1111111      12344578899999999999887653     469


Q ss_pred             EEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCe--------------EEEEeCCCCCc--eEEEeCCC---
Q psy12911        101 KCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKT--------------LKFWDLRTPQP--IMTINLPE---  161 (356)
Q Consensus       101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~--------------i~iwd~~~~~~--~~~~~~~~---  161 (356)
                      ++||+.+++.+....+...+..++|+  || +.|+.++.++.              |++|++.+++.  ...+....   
T Consensus       192 ~v~dl~tg~~~~~~~~~~~~~~~~ws--pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~  268 (741)
T 1yr2_A          192 KFVGVADGKPLADELKWVKFSGLAWL--GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK  268 (741)
T ss_dssp             EEEETTTCCEEEEEEEEEESCCCEES--TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred             EEEECCCCCCCCccCCCceeccEEEE--CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence            99999999876543222234678999  88 88888876654              89999987752  33333322   


Q ss_pred             --eeEEEecCCCeEEEEecC-----CeEEEEeCCCCccc-cccccCcccccceEEEeecCCCCCCCeEEEeec----CCe
Q psy12911        162 --RCYCADVDYPLAVVGTAG-----RGIVLYQLEGKPQE-FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV----EGR  229 (356)
Q Consensus       162 --~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----dg~  229 (356)
                        ....+++++..++..+.+     ..|.+||+.++... ...+.... ...... ++|+    +..++..+.    ++.
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~-~~~d----g~~l~~~s~~~~~~~~  342 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL-KAQWDF-VDGV----GDQLWFVSGDGAPLKK  342 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS-SSCEEE-EEEE----TTEEEEEECTTCTTCE
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC-CceEEE-Eecc----CCEEEEEECCCCCCCE
Confidence              244567777777776654     48999999876222 22222222 223333 3477    667777665    345


Q ss_pred             EEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC-cceecCCCCC-CccceE
Q psy12911        230 VAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD-ARTKLKPSEA-MDMSIS  307 (356)
Q Consensus       230 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~  307 (356)
                      |.+|+++... .....+..+..          ..+..++++ ++.++++...|+..+||.+. +++.+..+.. +.+.+.
T Consensus       343 l~~~d~~~~~-~~~~~l~~~~~----------~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~  410 (741)
T 1yr2_A          343 IVRVDLSGST-PRFDTVVPESK----------DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSAS  410 (741)
T ss_dssp             EEEEECSSSS-CEEEEEECCCS----------SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEE
T ss_pred             EEEEeCCCCc-cccEEEecCCC----------CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEE
Confidence            8888876531 12222322221          046678887 56788888889987777654 3555555553 366789


Q ss_pred             EEEECCCCCEEEEEe
Q psy12911        308 TCALNHNGQIFAYAV  322 (356)
Q Consensus       308 ~~~~s~~~~~l~~~s  322 (356)
                      .++++|+++.|+...
T Consensus       411 ~~~~s~d~~~l~~~~  425 (741)
T 1yr2_A          411 GLSGRPGDRHAYLSF  425 (741)
T ss_dssp             EEECCBTCSCEEEEE
T ss_pred             EeecCCCCCEEEEEE
Confidence            999999998666544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.65  E-value=1.1e-12  Score=107.58  Aligned_cols=235  Identities=10%  Similarity=0.044  Sum_probs=154.9

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  103 (356)
                      ++..+..---+..|++++  +.++++...++.|..||..++. .  ..+ .....+.+++++++|+++++ . ++.|.+|
T Consensus         7 ~~~~~~~~~Egp~w~~~~--~~l~~~d~~~~~i~~~d~~~~~-~--~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~   78 (297)
T 3g4e_A            7 VLPENCRCGESPVWEEVS--NSLLFVDIPAKKVCRWDSFTKQ-V--QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCAL   78 (297)
T ss_dssp             EECCCCSBEEEEEEETTT--TEEEEEETTTTEEEEEETTTCC-E--EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEE
T ss_pred             EeccCCccccCCeEECCC--CEEEEEECCCCEEEEEECCCCc-E--EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEE
Confidence            445555666789999965  2677777788999999988732 2  222 24567999999999995554 3 5689999


Q ss_pred             EcCCCceeeeccc-----CCCeeEEEEEeCCCCCeEEEEECCC---------eEEEEeCCCCCceEEEeCCCeeEEEecC
Q psy12911        104 DLASNQSMQVAQH-----DAPVKTCHWIKAPNYTCLMTGSWDK---------TLKFWDLRTPQPIMTINLPERCYCADVD  169 (356)
Q Consensus       104 d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (356)
                      |..+++...+...     ...++.+++.  ++|+++++...+.         .-.+|.+.....+..+            
T Consensus        79 d~~~g~~~~~~~~~~~~~~~~~~di~~d--~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~------------  144 (297)
T 3g4e_A           79 NWKEQSAVVLATVDNDKKNNRFNDGKVD--PAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY------------  144 (297)
T ss_dssp             ETTTTEEEEEEECCTTCSSEEEEEEEEC--TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE------------
T ss_pred             ECCCCcEEEEEecCCCCCCCCCCCEEEC--CCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE------------
Confidence            9988876543221     2347888888  8888666543221         1122222111000000            


Q ss_pred             CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCCCCCc--cee
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPANPKDN--FTF  246 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~~~~~--~~~  246 (356)
                                     .              ........++|+|+    +..+ ++.+.++.|.+|+++.......  ..+
T Consensus       145 ---------------~--------------~~~~~pngi~~spd----g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~  191 (297)
T 3g4e_A          145 ---------------F--------------DQVDISNGLDWSLD----HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV  191 (297)
T ss_dssp             ---------------E--------------EEESBEEEEEECTT----SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred             ---------------e--------------eccccccceEEcCC----CCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence                           0              01123467899998    5544 5556678899998853322211  111


Q ss_pred             ---eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEEC-CCCCEEEEEe
Q psy12911        247 ---KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALN-HNGQIFAYAV  322 (356)
Q Consensus       247 ---~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~s  322 (356)
                         ..+..           ....+++.++|++.++...++.|.+||..+++.+..+..+...+++++|+ ||++.|..++
T Consensus       192 ~~~~~~~~-----------~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          192 YKLEKEEQ-----------IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EECCGGGC-----------EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             EECCCCCC-----------CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence               11111           57789999999988888888899999999999888887777789999998 8988887776


Q ss_pred             cc
Q psy12911        323 SY  324 (356)
Q Consensus       323 ~~  324 (356)
                      ..
T Consensus       261 ~~  262 (297)
T 3g4e_A          261 AR  262 (297)
T ss_dssp             BC
T ss_pred             CC
Confidence            53

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.64  E-value=6.8e-13  Score=109.63  Aligned_cols=240  Identities=8%  Similarity=0.018  Sum_probs=157.7

Q ss_pred             CCCCCCeeEEEecCCCCCceEEEE-------EeCCCeEEEEeccCCCceeeeee---ccCCcceeEEEEccC-CCeEEEE
Q psy12911         26 SPPEDSISCMAFSPSTLPQYFLIA-------GSWDNNVRCWEVEPNGKTIPKSM---QGMSEPVLDVAWIDD-GTKVFMA   94 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~~~~~~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~~~   94 (356)
                      ...-....+++|++++   .++++       +..++.|.+||..++.... ...   .++...+.+++++++ ++++++.
T Consensus        14 ~~~~~~~~~~~~~~~g---~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~~   89 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNG---DFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVAD   89 (314)
T ss_dssp             ECCCTTCEEEEECTTS---CEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEE
T ss_pred             hccCCCccCceECCCC---CEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEEE
Confidence            3344567899999998   87777       6778999999987633221 111   124567899999999 6545544


Q ss_pred             cCCCeEEEEEcCCCceeee-cc-----cCCCeeEEEEEeCCCCCeEEEEECC---------------CeEEEEeCCCCCc
Q psy12911         95 GCDKTVKCWDLASNQSMQV-AQ-----HDAPVKTCHWIKAPNYTCLMTGSWD---------------KTLKFWDLRTPQP  153 (356)
Q Consensus        95 ~~dg~i~vwd~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~  153 (356)
                       ..+.|.+||.. ++...+ ..     ....+.++++.  ++++++++...+               +.|..||.. ++.
T Consensus        90 -~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d--~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           90 -MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD--YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             -TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC--TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred             -CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC--CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence             44579999998 765444 22     12357899998  899887776654               568888765 554


Q ss_pred             eEEEeC--CCeeEEEe----cCCCeEEEE-ecCCeEEEEeCC-CCcc----ccccccCccc-ccceEEEeecCCCCCCCe
Q psy12911        154 IMTINL--PERCYCAD----VDYPLAVVG-TAGRGIVLYQLE-GKPQ----EFKKTESPLK-YQNRCIAIFRDKKKQPAG  220 (356)
Q Consensus       154 ~~~~~~--~~~~~~~~----~~~~~~~~~-~~d~~i~i~d~~-~~~~----~~~~~~~~~~-~~i~~~~~~~~~~~~~~~  220 (356)
                      ......  ....++++    .++..++++ ..++.|.+||+. .+..    ...... ... ..+..+++.++    +.+
T Consensus       165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~i~~d~~----G~l  239 (314)
T 1pjx_A          165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDED----NNL  239 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTT----CCE
T ss_pred             EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-CCCCCCCCceEECCC----CCE
Confidence            333221  22345566    556555555 567999999986 3321    111111 111 45678889888    777


Q ss_pred             EEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcCc
Q psy12911        221 YGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       221 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~~  292 (356)
                      +++...++.|.+|+.+..  +....+..+..           .+.+++|+|+|+ ++++...++.|..|++..
T Consensus       240 ~v~~~~~~~i~~~d~~~g--~~~~~~~~~~~-----------~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          240 LVANWGSSHIEVFGPDGG--QPKMRIRCPFE-----------KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEETTTEEEEECTTCB--SCSEEEECSSS-----------CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEcCCCEEEEEcCCCC--cEeEEEeCCCC-----------CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            777777889999987633  33444444333           689999999998 455666678999999874

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.64  E-value=4.7e-14  Score=130.32  Aligned_cols=241  Identities=12%  Similarity=0.046  Sum_probs=157.3

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCC-----CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe---
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWD-----NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT---   99 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---   99 (356)
                      |...+..++|||||   ++||.++.+     ..|++||+.++. .....+  +...+..++|+|| +.|+.++.++.   
T Consensus       161 ~~~~~~~~~~SPDG---~~la~~~~~~G~e~~~i~v~dl~tg~-~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~  233 (741)
T 1yr2_A          161 GATALDAWAASDDG---RLLAYSVQDGGSDWRTVKFVGVADGK-PLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEG  233 (741)
T ss_dssp             --EEEEEEEECTTS---SEEEEEEEETTCSEEEEEEEETTTCC-EEEEEE--EEEESCCCEESTT-SEEEEEECCCC---
T ss_pred             CCEEEEeEEECCCC---CEEEEEEcCCCCceEEEEEEECCCCC-CCCccC--CCceeccEEEECC-CEEEEEEecCcccc
Confidence            44478899999999   888877643     369999998843 221111  2223468899999 98888876553   


Q ss_pred             -----------EEEEEcCCCce---eeec--ccCCCeeEEEEEeCCCCCeEEEEECCC-----eEEEEeCCCC--CceEE
Q psy12911        100 -----------VKCWDLASNQS---MQVA--QHDAPVKTCHWIKAPNYTCLMTGSWDK-----TLKFWDLRTP--QPIMT  156 (356)
Q Consensus       100 -----------i~vwd~~~~~~---~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~--~~~~~  156 (356)
                                 |++|++.+++.   +.+.  .+...+..+.|+  +||++|+..+.++     .|++||+.++  +....
T Consensus       234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  311 (741)
T 1yr2_A          234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVS--SDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA  311 (741)
T ss_dssp             -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE
T ss_pred             cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEEC--CCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE
Confidence                       89999987763   1222  233458899999  9999888877544     8999999877  42444


Q ss_pred             EeCCC--eeEEEecCCCeEEEEec----CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeE
Q psy12911        157 INLPE--RCYCADVDYPLAVVGTA----GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRV  230 (356)
Q Consensus       157 ~~~~~--~~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i  230 (356)
                      +..+.  ....+..+++.++..+.    ++.|.+||+.+.......+.......+..+++. +    +.++++...++..
T Consensus       312 l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~----~~lv~~~~~dg~~  386 (741)
T 1yr2_A          312 LIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G----NRLFASYIHDAKS  386 (741)
T ss_dssp             EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B----TEEEEEEEETTEE
T ss_pred             ecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C----CEEEEEEEECCEE
Confidence            44332  22334567777777765    356999998874201111112233345566666 3    4678888899998


Q ss_pred             EEEEeCCCCCCCcceeeee-cCCCCCCCcccccceEEEEEeCCCCEEEE----EcCCCeEEEEEcCcce
Q psy12911        231 AIQYVNPANPKDNFTFKCH-RSNGGAGGVQDIYAVNGIVFHPVHGTLAT----VGSEGTFSFWDKDART  294 (356)
Q Consensus       231 ~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~sp~~~~l~s----~~~dg~i~iwd~~~~~  294 (356)
                      +||.++.. ......+..+ ..           .+..++++|+++.|+.    ....++|++||+.+++
T Consensus       387 ~l~~~~~~-g~~~~~l~~~~~~-----------~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          387 QVLAFDLD-GKPAGAVSLPGIG-----------SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEETT-SCEEEECBCSSSC-----------EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEeCC-CCceeeccCCCCe-----------EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            88877632 1233333321 22           6888999999876552    2345789999998775

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=3.4e-13  Score=111.42  Aligned_cols=227  Identities=8%  Similarity=-0.035  Sum_probs=150.4

Q ss_pred             CCcceeEEEEccCCCeEEE-------EcCCCeEEEEEcCCCceeeecc-----cCCCeeEEEEEeCCC-CCeEEEEECCC
Q psy12911         75 MSEPVLDVAWIDDGTKVFM-------AGCDKTVKCWDLASNQSMQVAQ-----HDAPVKTCHWIKAPN-YTCLMTGSWDK  141 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~~l~~-------~~~dg~i~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~-~~~l~~~~~dg  141 (356)
                      .-....+++|+++++.+++       ...++.|.+||..+++...+..     +...+.+++++  ++ ++++++ +..+
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~--~~~g~l~v~-~~~~   92 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD--RDANQLFVA-DMRL   92 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC--SSSSEEEEE-ETTT
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEe--cCCCcEEEE-ECCC
Confidence            3345689999999987777       5678999999988887655433     55678999998  88 665554 4455


Q ss_pred             eEEEEeCCCCCceEE-EeC-------CCeeEEEecCCCeEEEEecC---------------CeEEEEeCCCCcccccccc
Q psy12911        142 TLKFWDLRTPQPIMT-INL-------PERCYCADVDYPLAVVGTAG---------------RGIVLYQLEGKPQEFKKTE  198 (356)
Q Consensus       142 ~i~iwd~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~d---------------~~i~i~d~~~~~~~~~~~~  198 (356)
                      .|.+||.. ++.... ...       ....+.++.++...++...+               +.|..||.. +...  ...
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~--~~~  168 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI--QVD  168 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE--EEE
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE--Eec
Confidence            79999987 654332 211       11345556666655555444               567777765 3211  111


Q ss_pred             CcccccceEEEee----cCCCCCCCeEEE-eecCCeEEEEEeCC-CCCC---Ccceeeeec-CCCCCCCcccccceEEEE
Q psy12911        199 SPLKYQNRCIAIF----RDKKKQPAGYGL-GSVEGRVAIQYVNP-ANPK---DNFTFKCHR-SNGGAGGVQDIYAVNGIV  268 (356)
Q Consensus       199 ~~~~~~i~~~~~~----~~~~~~~~~~~~-~~~dg~i~i~~~~~-~~~~---~~~~~~~~~-~~~~~~~~~~~~~i~~i~  268 (356)
                       ........++++    ++    +..+++ ...++.|.+|+.+. ....   ....+..+. .           ....++
T Consensus       169 -~~~~~~~~i~~~~~~d~d----g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~p~~i~  232 (314)
T 1pjx_A          169 -TAFQFPNGIAVRHMNDGR----PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG-----------GADGMD  232 (314)
T ss_dssp             -EEESSEEEEEEEECTTSC----EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC-----------EEEEEE
T ss_pred             -cCCCCcceEEEecccCCC----CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC-----------CCCceE
Confidence             122345788888    87    545444 45678999999862 2110   111111111 1           477899


Q ss_pred             EeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        269 FHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       269 ~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                      ++++|+++++...++.|.+||..+++.+..+..+...+.+++|+|+|+.|..++..
T Consensus       233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence            99999998888788999999998777666666666789999999999977666543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.61  E-value=8.1e-13  Score=110.57  Aligned_cols=258  Identities=10%  Similarity=0.017  Sum_probs=164.3

Q ss_pred             CCeeEEEecCCCCCceEEEEEe--CCCeEEEEeccCCCceee-----eeeccCCcceeEEEEccCCCeEEEEcC-----C
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGS--WDNNVRCWEVEPNGKTIP-----KSMQGMSEPVLDVAWIDDGTKVFMAGC-----D   97 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d   97 (356)
                      .....++++++|   +++++..  .++.++||.+.. +....     .....+-..+..+++.++++++++-..     +
T Consensus        17 ~~p~~va~~~~g---~~~v~~~~~~~~~~~l~~~~~-g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDG---RLFLSLHQFYQPEMQVAELTQ-DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTS---CEEEEECGGGCCSCSEEEEET-TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             CCcceEEECCCC---CEEEEeCCCCCCceEEEEECC-CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            689999999999   8888864  234366777653 32210     111234568999999999876555433     5


Q ss_pred             CeEEEEEcCCCceeeecc-------cCCCeeEEEEEeCCCC-CeEEEEE---CCCeEEEEeCCCCCceEEEeCCCe----
Q psy12911         98 KTVKCWDLASNQSMQVAQ-------HDAPVKTCHWIKAPNY-TCLMTGS---WDKTLKFWDLRTPQPIMTINLPER----  162 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~-~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~----  162 (356)
                      +.|.+||+.+++.+....       +...+..+++.  +++ ..+++..   .++.|.+||+.+++..+.+..+..    
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd--~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~  170 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVD--LIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE  170 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEE--TTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEe--cCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence            789999999888654221       23456899998  654 4445544   578999999998887666543211    


Q ss_pred             eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC-eEEEEEeCC---C
Q psy12911        163 CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG-RVAIQYVNP---A  238 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg-~i~i~~~~~---~  238 (356)
                      ...+...+..+.+...++.+..|.                ..+..++++|+    +..++.+...+ .+..++...   .
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~----------------~~~~gia~s~d----g~~ly~~~~~~~~l~~~~~~~~~~~  230 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPH----------------LGVNGIVLDAE----NEWLYLSPMHSTSMYRIKSADLSNL  230 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCC----------------CCEEEEEECTT----SCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred             ccceeECCEEEEeccCCCceecee----------------cccceeEeccC----CCEEEEEeCCCCeEEEEEHHHhcCC
Confidence            122333444444555566554432                23578999999    67777776665 444444321   1


Q ss_pred             CCC---Ccc--eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC-CccceEEEEEC
Q psy12911        239 NPK---DNF--TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA-MDMSISTCALN  312 (356)
Q Consensus       239 ~~~---~~~--~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s  312 (356)
                      ...   ...  ...++..           ....++++++|.++++...++.|.+||..+++....... +...+.+++|.
T Consensus       231 ~~~~~~~~~~~~~~g~~g-----------~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~  299 (343)
T 2qe8_A          231 QLTDAELGSKIERYSEKP-----------ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG  299 (343)
T ss_dssp             TCCHHHHHTTCEEEEECC-----------SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred             CCChhhhhcceEecccCC-----------CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence            000   000  1122322           456799999999999999999999999855654322221 23468899999


Q ss_pred             CCCCEEEEEecc
Q psy12911        313 HNGQIFAYAVSY  324 (356)
Q Consensus       313 ~~~~~l~~~s~~  324 (356)
                      ++|+++++++..
T Consensus       300 ~~g~l~v~~~~~  311 (343)
T 2qe8_A          300 SDGYLYFDCNQL  311 (343)
T ss_dssp             TTSCEEEEECCG
T ss_pred             CCCcEEEEeCcc
Confidence            999988887654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.58  E-value=1.2e-12  Score=111.03  Aligned_cols=253  Identities=11%  Similarity=0.011  Sum_probs=165.2

Q ss_pred             CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEe----------CCCeEEEEeccCCCceeeeeeccC-------Cccee
Q psy12911         18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGS----------WDNNVRCWEVEPNGKTIPKSMQGM-------SEPVL   80 (356)
Q Consensus        18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~-------~~~v~   80 (356)
                      ..+.+..+..-..+  .++++||+   ++|+++.          .++.|.++|..+.  .....+.--       .....
T Consensus       108 t~~vv~~I~vG~~P--gia~SpDg---k~lyVan~~~~~~~~G~~~~~VsviD~~t~--~vv~~I~v~g~~r~~~g~~P~  180 (426)
T 3c75_H          108 TGRILGMTDGGFLP--HPVAAEDG---SFFAQASTVFERIARGKRTDYVEVFDPVTF--LPIADIELPDAPRFLVGTYQW  180 (426)
T ss_dssp             TTEEEEEEEECSSC--EEEECTTS---SCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGG
T ss_pred             CCEEEEEEECCCCC--ceEECCCC---CEEEEEeccccccccCCCCCEEEEEECCCC--cEEEEEECCCccccccCCCcc
Confidence            33444444333344  89999999   8777775          3678999999883  333443211       23456


Q ss_pred             EEEEccCCCeEEEEcC--CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE-
Q psy12911         81 DVAWIDDGTKVFMAGC--DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI-  157 (356)
Q Consensus        81 ~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-  157 (356)
                      .+.|+|||++|+++..  ++.|.+.|+.+++.+....-.+.   ....| .....+++.+.||.+.+.+..+++..... 
T Consensus       181 ~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p-~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~  256 (426)
T 3c75_H          181 MNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFP-ASPTVFYMNCRDGSLARVDFADGETKVTNT  256 (426)
T ss_dssp             GSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEE-EETTEEEEEETTSSEEEEECCTTCCEEEEC
T ss_pred             eEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeecc-CCCcEEEEEcCCCCEEEEECCCCcEEEEee
Confidence            7899999999998864  58999999999988763322221   22331 22356677778898888888666655322 


Q ss_pred             ---eCCCe----eEEEecCCCeEEEEecCCeEEEEeCCCCccccccc-c---------CcccccceEEEeecCCCCCCCe
Q psy12911        158 ---NLPER----CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT-E---------SPLKYQNRCIAIFRDKKKQPAG  220 (356)
Q Consensus       158 ---~~~~~----~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~---------~~~~~~i~~~~~~~~~~~~~~~  220 (356)
                         .....    ...+...+..++.....+.+.+.|+.......... .         .........++++|+    +..
T Consensus       257 ~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d----g~r  332 (426)
T 3c75_H          257 EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ----SDR  332 (426)
T ss_dssp             CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG----GTE
T ss_pred             eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC----CCE
Confidence               11111    12345566677777778999999987653211110 0         001122334788998    556


Q ss_pred             EEEeec----------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEEEc-CCCeEEEE
Q psy12911        221 YGLGSV----------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVG-SEGTFSFW  288 (356)
Q Consensus       221 ~~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~-~dg~i~iw  288 (356)
                      +++...          ++.|.++|....  +.+.++....            ....++|+|||+ ++++.. .++.|.++
T Consensus       333 lyVa~~~~~~gthk~~s~~VsVID~~T~--kvv~~I~vg~------------~P~gia~spDg~~~lyv~n~~s~~VsVI  398 (426)
T 3c75_H          333 IYLLVDQRDEWKHKAASRFVVVLNAETG--ERINKIELGH------------EIDSINVSQDAEPLLYALSAGTQTLHIY  398 (426)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTC--CEEEEEEEEE------------EECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             EEEEecccccccccCCCCEEEEEECCCC--eEEEEEECCC------------CcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence            655542          346888777665  6677776544            478999999998 888887 58999999


Q ss_pred             EcCcceecCCC
Q psy12911        289 DKDARTKLKPS  299 (356)
Q Consensus       289 d~~~~~~~~~~  299 (356)
                      |+.+++.+.++
T Consensus       399 D~~t~kvv~tI  409 (426)
T 3c75_H          399 DAATGEELRSV  409 (426)
T ss_dssp             ETTTCCEEEEE
T ss_pred             ECCCCCEEEEe
Confidence            99999988876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=4.1e-13  Score=110.01  Aligned_cols=205  Identities=9%  Similarity=-0.037  Sum_probs=135.7

Q ss_pred             eeeccCCcceeEEEEccCCC-eEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeC
Q psy12911         70 KSMQGMSEPVLDVAWIDDGT-KVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL  148 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~  148 (356)
                      ..+..+.....+++|+|+++ .++++..++.|..|+..++ ...+..+...+.+++++  ++++++++...++.|.+||.
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~--~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLN--KQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEEC--TTCCEEEEETTTTEEEEECS
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeEC--CCCcEEEEecCCCeEEEEcC
Confidence            34445566778999999998 7778888999999999988 55566677789999999  99988777766789999998


Q ss_pred             CCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEE----e
Q psy12911        149 RTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL----G  224 (356)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~  224 (356)
                      .+++.........                                     ......+..+++.|+    +.++++    +
T Consensus        98 ~~g~~~~~~~~~~-------------------------------------~~~~~~~~~i~~d~~----G~l~vtd~~~g  136 (296)
T 3e5z_A           98 PGGEWESIADSFE-------------------------------------GKKLNSPNDVCLAPD----GSLWFSDPTYG  136 (296)
T ss_dssp             TTCCEEEEECEET-------------------------------------TEECCCCCCEEECTT----SCEEEEECSHH
T ss_pred             CCCcEEEEeeccC-------------------------------------CCCCCCCCCEEECCC----CCEEEECCccc
Confidence            7776432221100                                     001123456777776    555554    2


Q ss_pred             ec-----------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC-c
Q psy12911        225 SV-----------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD-A  292 (356)
Q Consensus       225 ~~-----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~-~  292 (356)
                      +.           .+.-.||.++..  .....+..+..           ..+.++|+|+|+.|++.+.++.|++|++. +
T Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~-----------~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~  203 (296)
T 3e5z_A          137 IDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDRV-----------KPNGLAFLPSGNLLVSDTGDNATHRYCLNAR  203 (296)
T ss_dssp             HHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCCS-----------SEEEEEECTTSCEEEEETTTTEEEEEEECSS
T ss_pred             cccccccccccccCCCcEEEEECCC--CCEEEeecCCC-----------CCccEEECCCCCEEEEeCCCCeEEEEEECCC
Confidence            21           011245555433  12223332222           57899999999988888888999999986 4


Q ss_pred             cee---cCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCC
Q psy12911        293 RTK---LKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPN  336 (356)
Q Consensus       293 ~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~  336 (356)
                      ++.   ...+..+.+.+.+++++++|+++++. .    .....|++.
T Consensus       204 g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~----~~v~~~~~~  245 (296)
T 3e5z_A          204 GETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-G----DGVHVLTPD  245 (296)
T ss_dssp             SCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-T----TEEEEECTT
T ss_pred             CcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-C----CeEEEECCC
Confidence            443   22223345567789999999977766 2    334455554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.57  E-value=3e-12  Score=109.47  Aligned_cols=234  Identities=9%  Similarity=-0.051  Sum_probs=155.1

Q ss_pred             ceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCC--eEEEEeCCCCCceE
Q psy12911         78 PVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK--TLKFWDLRTPQPIM  155 (356)
Q Consensus        78 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~  155 (356)
                      ....|+|+++++++++...++.|++||..+++...+........ ++|+  ++++.|+++..++  .|.++|...+....
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~--~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVT--KDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEEC--TTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEe--cCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            57799999999877777778999999999888766443333344 8898  9999888888766  79999987766544


Q ss_pred             EE----e-C--CCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccc--cCcccc-cce-EEEeecCCCCCCCeEEEe
Q psy12911        156 TI----N-L--PERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT--ESPLKY-QNR-CIAIFRDKKKQPAGYGLG  224 (356)
Q Consensus       156 ~~----~-~--~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~-~i~-~~~~~~~~~~~~~~~~~~  224 (356)
                      .+    . .  ....+++++....++++..++.|..||..+........  ...... ... .++++|+.   +.++++-
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~---g~lyv~d  285 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD---SNFYMSD  285 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT---TEEEEEE
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC---CEEEEEe
Confidence            44    2 1  12345666655667777778999999998764322200  111111 123 89999952   5566666


Q ss_pred             ecCCeEEEEEeCCCCCCCcceeeeecCC-CCCCC---cccccceEEEEEeCCCCEEEEEc-CCCeEEEEEcCcceecCCC
Q psy12911        225 SVEGRVAIQYVNPANPKDNFTFKCHRSN-GGAGG---VQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWDKDARTKLKPS  299 (356)
Q Consensus       225 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~  299 (356)
                      ..++.|+.|+.+..    ...+.++... ....+   .........++++|+|+++++-. .+++|+.|++.+++... +
T Consensus       286 ~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~  360 (409)
T 3hrp_A          286 QNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST-V  360 (409)
T ss_dssp             TTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-E
T ss_pred             CCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-E
Confidence            77888888876543    3333333200 00000   00012478999999999888888 89999999977775432 2


Q ss_pred             CCC---------------ccceEEEEECCCCCEEEEEe
Q psy12911        300 EAM---------------DMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       300 ~~~---------------~~~v~~~~~s~~~~~l~~~s  322 (356)
                      .++               -.....++++++|.++++-.
T Consensus       361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~  398 (409)
T 3hrp_A          361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA  398 (409)
T ss_dssp             EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred             eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence            111               24578999999987766654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.57  E-value=1.9e-11  Score=100.06  Aligned_cols=236  Identities=8%  Similarity=-0.067  Sum_probs=156.5

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS  107 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  107 (356)
                      +...+.++++++++   .+.++...++.|..|+...  ......+......+..+++.++++++++...++.|.+||. +
T Consensus        55 ~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~  128 (299)
T 2z2n_A           55 PDAKVMCLTISSDG---EVWFTENAANKIGRITKKG--IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-D  128 (299)
T ss_dssp             TTCCEEEEEECTTS---CEEEEETTTTEEEEECTTS--CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred             ccCceeeEEECCCC---CEEEeCCCCCeEEEECCCC--cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-C
Confidence            45789999999998   7777776688999999763  2222223234567899999999988887777889999998 5


Q ss_pred             Cceeee--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEE-EeC-CCe--eEEEecCCCeEEEEecCCe
Q psy12911        108 NQSMQV--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMT-INL-PER--CYCADVDYPLAVVGTAGRG  181 (356)
Q Consensus       108 ~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~-~~~--~~~~~~~~~~~~~~~~d~~  181 (356)
                      ++....  ......+..+++.  +++.++++...++.|..||. +++.... +.. ...  .++++..+...++...++.
T Consensus       129 g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~  205 (299)
T 2z2n_A          129 GKIREYELPNKGSYPSFITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK  205 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             CCEEEecCCCCCCCCceEEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce
Confidence            555442  2345678899998  88887777766789999998 6654432 111 112  3445555555555556789


Q ss_pred             EEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccc
Q psy12911        182 IVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDI  261 (356)
Q Consensus       182 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (356)
                      |.+||. ++.... .........+.++++.++    +..+++...++.|..|+.+ .   ....+.....         .
T Consensus       206 i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~----g~l~v~~~~~~~i~~~d~~-g---~~~~~~~~~~---------~  266 (299)
T 2z2n_A          206 IGRITT-SGEITE-FKIPTPNARPHAITAGAG----IDLWFTEWGANKIGRLTSN-N---IIEEYPIQIK---------S  266 (299)
T ss_dssp             EEEECT-TCCEEE-EECSSTTCCEEEEEECST----TCEEEEETTTTEEEEEETT-T---EEEEEECSSS---------S
T ss_pred             EEEECC-CCcEEE-EECCCCCCCceeEEECCC----CCEEEeccCCceEEEECCC-C---ceEEEeCCCC---------C
Confidence            999999 443221 111123356788999888    6666655577889999873 2   1222211110         0


Q ss_pred             cceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc
Q psy12911        262 YAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       262 ~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~  293 (356)
                      ..+.++++ ++|.+.++.. .+.|..++.+++
T Consensus       267 ~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          267 AEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             CCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             CccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            16889999 8888877766 567777787654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.57  E-value=2e-11  Score=101.36  Aligned_cols=234  Identities=9%  Similarity=-0.023  Sum_probs=148.0

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD  104 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  104 (356)
                      ......-..+..|+|++  +.++++...++.|.+||..++ ..  ..+. ....+.+++|+++|+++++. . ..|.+||
T Consensus        44 ~~~~~~~~egp~~~~~~--~~l~~~d~~~~~i~~~d~~~~-~~--~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d  115 (326)
T 2ghs_A           44 DETPMLLGEGPTFDPAS--GTAWWFNILERELHELHLASG-RK--TVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRD  115 (326)
T ss_dssp             ECSCCSBEEEEEEETTT--TEEEEEEGGGTEEEEEETTTT-EE--EEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEE
T ss_pred             eccCCCCCcCCeEeCCC--CEEEEEECCCCEEEEEECCCC-cE--EEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEE
Confidence            33333456788999975  267777777899999998763 22  2222 34679999999999877664 3 4599999


Q ss_pred             cCCCceeeeccc-----CCCeeEEEEEeCCCCCeEEEEECC------CeEEEEeCCCCCceEEEeCCCeeEEEecCCCeE
Q psy12911        105 LASNQSMQVAQH-----DAPVKTCHWIKAPNYTCLMTGSWD------KTLKFWDLRTPQPIMTINLPERCYCADVDYPLA  173 (356)
Q Consensus       105 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (356)
                      ..+++...+...     ...+.+++++  ++|+++++...+      +.|..+|  +++. ..+.               
T Consensus       116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~---------------  175 (326)
T 2ghs_A          116 TATGVLTLHAELESDLPGNRSNDGRMH--PSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLF---------------  175 (326)
T ss_dssp             TTTCCEEEEECSSTTCTTEEEEEEEEC--TTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEE---------------
T ss_pred             CCCCcEEEEeeCCCCCCCCCCCCEEEC--CCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEee---------------
Confidence            988876543221     2357889998  888866654321      2333333  2211 1000               


Q ss_pred             EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEE-EeecCCeEEEEEeC--CC-CCCCcceeeee
Q psy12911        174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYG-LGSVEGRVAIQYVN--PA-NPKDNFTFKCH  249 (356)
Q Consensus       174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~dg~i~i~~~~--~~-~~~~~~~~~~~  249 (356)
                                                ........++|+|+    +..++ +.+.++.|.+|+++  .+ .......+...
T Consensus       176 --------------------------~~~~~~~~i~~s~d----g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~  225 (326)
T 2ghs_A          176 --------------------------ADISIPNSICFSPD----GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS  225 (326)
T ss_dssp             --------------------------EEESSEEEEEECTT----SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred             --------------------------CCCcccCCeEEcCC----CCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC
Confidence                                      00112457888888    55554 44556888899886  22 11111112111


Q ss_pred             cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEEC-CCCCEEEEEeccC
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALN-HNGQIFAYAVSYD  325 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~s~~d  325 (356)
                      ...        ......+++.++|.+.++...++.|.+||. +++.+..+..+...+++++|+ ++++.|.+++..+
T Consensus       226 ~~~--------~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          226 TGI--------KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             TTS--------SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             CCC--------CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            000        014678999999998887777789999998 577666666666679999998 8988887666443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.56  E-value=1.4e-13  Score=115.08  Aligned_cols=172  Identities=9%  Similarity=-0.032  Sum_probs=124.5

Q ss_pred             ceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc-----------eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEE
Q psy12911         78 PVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ-----------SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW  146 (356)
Q Consensus        78 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw  146 (356)
                      +++.+++++...++++|+.++ +.+|++...+           ......+.. |+.++|    ++..|+++ .++.|++|
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEEE
Confidence            689999999999999999875 6669876433           112334566 999988    56788887 78899999


Q ss_pred             eCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec
Q psy12911        147 DLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV  226 (356)
Q Consensus       147 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  226 (356)
                      |+++..........                                         ...+.++.+.+.      .+++++.
T Consensus       112 dv~sl~~~~~~~~~-----------------------------------------~~~v~~i~~~~p------~~av~~~  144 (388)
T 1xip_A          112 DLEELSEFRTVTSF-----------------------------------------EKPVFQLKNVNN------TLVILNS  144 (388)
T ss_dssp             ESSSTTCEEEEEEC-----------------------------------------SSCEEEEEECSS------EEEEEET
T ss_pred             EchhhhccCcccee-----------------------------------------ecceeeEEecCC------CEEEEEC
Confidence            98876644333211                                         112334444333      3888899


Q ss_pred             CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee--cCCC-----
Q psy12911        227 EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK--LKPS-----  299 (356)
Q Consensus       227 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~--~~~~-----  299 (356)
                      ||.+.+|++.....  . .   +..           .|++++|||+|  ++.|..||++++|+...++.  ..++     
T Consensus       145 dG~L~v~dl~~~~~--~-~---~~~-----------~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~  205 (388)
T 1xip_A          145 VNDLSALDLRTKST--K-Q---LAQ-----------NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSE  205 (388)
T ss_dssp             TSEEEEEETTTCCE--E-E---EEE-----------SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHH
T ss_pred             CCCEEEEEccCCcc--c-c---ccC-----------CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcc
Confidence            99999999975532  1 1   222           69999999999  67888999999999887664  3344     


Q ss_pred             -C---CCccceEEEEECCCCCEEEEEe
Q psy12911        300 -E---AMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       300 -~---~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                       .   +|...|.++.|.+++.++++=.
T Consensus       206 ~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          206 LEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             HHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cccccCCCeeEEEEEEecCCeEEEEEc
Confidence             2   4678999999999999998744

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.56  E-value=2.7e-12  Score=113.69  Aligned_cols=217  Identities=9%  Similarity=-0.009  Sum_probs=147.8

Q ss_pred             cCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC--CCCceEEEeCCCe-
Q psy12911         86 DDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR--TPQPIMTINLPER-  162 (356)
Q Consensus        86 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~-  162 (356)
                      +.+..+++...++.|.++|..+++.+........+..+.|+  ||++++++++.|+.|.+||+.  +++.+.++..... 
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~S--pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P  242 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLS--ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  242 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEEC--CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC
Confidence            44456677778999999999999988755555567799999  999999999999999999996  8888888886654 


Q ss_pred             -eEEEe----cCCCeEEEEec-CCeEEEEeCCCCccccccccCc--------c-cccceEEEeecCCCCCCCeEEEeecC
Q psy12911        163 -CYCAD----VDYPLAVVGTA-GRGIVLYQLEGKPQEFKKTESP--------L-KYQNRCIAIFRDKKKQPAGYGLGSVE  227 (356)
Q Consensus       163 -~~~~~----~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~--------~-~~~i~~~~~~~~~~~~~~~~~~~~~d  227 (356)
                       .+.++    +++.+++++.. ++++.++|..+.+.........        + ...+..+..++++   ...++.....
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~---~~~vv~~~~~  319 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR---PEFIVNVKET  319 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS---SEEEEEETTT
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC---CEEEEEecCC
Confidence             44555    46777776655 5999999988765432221111        1 1245677777763   3455566677


Q ss_pred             CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc-CCCeEEEEEcCcceecCCCCC-----
Q psy12911        228 GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWDKDARTKLKPSEA-----  301 (356)
Q Consensus       228 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-----  301 (356)
                      |.|.++|+.......+..+... .           ....+.|+|+|+++++++ .++.|.++|+.+++.+..+..     
T Consensus       320 g~v~~vd~~~~~~~~v~~i~~~-~-----------~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P  387 (567)
T 1qks_A          320 GKILLVDYTDLNNLKTTEISAE-R-----------FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP  387 (567)
T ss_dssp             TEEEEEETTCSSEEEEEEEECC-S-----------SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred             CeEEEEecCCCccceeeeeecc-c-----------cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence            9999988864321111122111 1           467889999999876654 678999999999987654432     


Q ss_pred             CccceEEEEECCCCCEEEE
Q psy12911        302 MDMSISTCALNHNGQIFAY  320 (356)
Q Consensus       302 ~~~~v~~~~~s~~~~~l~~  320 (356)
                      |.+.-..+ ++|++..+.+
T Consensus       388 hpg~g~~~-~~p~~g~v~~  405 (567)
T 1qks_A          388 HPGRGANF-VHPTFGPVWA  405 (567)
T ss_dssp             CCTTCEEE-EETTTEEEEE
T ss_pred             CCccceee-ECCCCCcEEE
Confidence            43222222 5787544433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.55  E-value=2.1e-11  Score=104.20  Aligned_cols=246  Identities=12%  Similarity=0.012  Sum_probs=160.2

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC--eEEEEEcCC
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK--TVKCWDLAS  107 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~  107 (356)
                      .....++|++++   +++++...++.|++||.+++  .+...... ..... ++|+++++.|+++..++  .|.+|+...
T Consensus       131 ~~P~~la~d~~g---~lyv~d~~~~~I~~id~~~g--~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          131 KYMWGIAAVGNN---TVLAYQRDDPRVRLISVDDN--KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCEEEEEECSTT---EEEEEETTTTEEEEEETTTT--EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred             CCceEEEEeCCC---CEEEEecCCCcEEEEECCCC--EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence            467899999998   87777777899999999762  33222322 33334 99999999999888765  899999876


Q ss_pred             Cceeeec----c-cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEE----EeCC--Ce---eEEEecCCC-e
Q psy12911        108 NQSMQVA----Q-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMT----INLP--ER---CYCADVDYP-L  172 (356)
Q Consensus       108 ~~~~~~~----~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~--~~---~~~~~~~~~-~  172 (356)
                      +......    . ....+.+++++  +++..|+.+..++.|+.||..++.....    ....  ..   .+++++.+. +
T Consensus       204 ~~~~~~~g~~~~~~~~~p~~iav~--p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          204 GWAPTRIGQLGSTFSGKIGAVALD--ETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             TTCEEEEEECCTTSCSCCCBCEEC--TTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             CceeEEeeeccchhcCCcEEEEEe--CCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence            6543322    2 45667889998  7444455577788999999987753222    1111  12   567777544 4


Q ss_pred             EEEEecCCeEEEEeCCCCcccccccc--C---------cccccceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCCCC
Q psy12911        173 AVVGTAGRGIVLYQLEGKPQEFKKTE--S---------PLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPANP  240 (356)
Q Consensus       173 ~~~~~~d~~i~i~d~~~~~~~~~~~~--~---------~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~~~  240 (356)
                      +++-...+.|+.|+.........-..  .         ..-.....+++.++    +.++++-. .++.|+.|+....  
T Consensus       282 yv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d----G~lyvad~~~~~~I~~~~~~~G--  355 (409)
T 3hrp_A          282 YMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDED----GNFYIVDGFKGYCLRKLDILDG--  355 (409)
T ss_dssp             EEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT----CCEEEEETTTTCEEEEEETTTT--
T ss_pred             EEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC----CCEEEEeCCCCCEEEEEECCCC--
Confidence            44555678999999876421110000  0         00134688999998    77777777 7899999986443  


Q ss_pred             CCcceeeeecCCCC-CCC---cccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        241 KDNFTFKCHRSNGG-AGG---VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       241 ~~~~~~~~~~~~~~-~~~---~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                       .+.++.++..... ..+   .........++++++|.++++-..+++|+.++++
T Consensus       356 -~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          356 -YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             -EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             -EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence             2344444311000 000   0111257899999999888888889999988753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.53  E-value=6.6e-12  Score=104.77  Aligned_cols=239  Identities=8%  Similarity=-0.041  Sum_probs=149.9

Q ss_pred             eEEEEEeCCC----eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc----------CCCeEEEEEcCCCce
Q psy12911         45 YFLIAGSWDN----NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG----------CDKTVKCWDLASNQS  110 (356)
Q Consensus        45 ~~l~~~~~dg----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~  110 (356)
                      ...++-..++    .|.++|..+  .+.+.++..-..+  .+.++||+++++++.          .++.|.+||+.+++.
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t--~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v  108 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGC--GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP  108 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTT--TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred             eEEEECCccCCccceEEEEECCC--CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence            3444444444    888999988  3444566544455  799999999998886          368999999999998


Q ss_pred             eeecc-c-------CCCeeEEEEEeCCCCCeEEEEEC--CCeEEE--EeCCCCCceEEEeCCCeeEEEecCC--------
Q psy12911        111 MQVAQ-H-------DAPVKTCHWIKAPNYTCLMTGSW--DKTLKF--WDLRTPQPIMTINLPERCYCADVDY--------  170 (356)
Q Consensus       111 ~~~~~-~-------~~~v~~~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~--------  170 (356)
                      +.... .       ......++++  |||++++++..  +..|.+  +|+.+   +..+..+.. ..+.+.+        
T Consensus       109 v~~I~v~~~~~~~~g~~P~~ia~S--pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-~~~~p~g~~~~~~~~  182 (368)
T 1mda_H          109 IADIELPDAPRFSVGPRVHIIGNC--ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-FHIHPGAAATHYLGS  182 (368)
T ss_dssp             EEEEEETTSCSCCBSCCTTSEEEC--TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-CCCEEEETTEEECCC
T ss_pred             EEEEECCCccccccCCCcceEEEc--CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-eEEccCCCeEEEEEc
Confidence            76332 1       1346788999  99999998875  467888  99876   444433211 0011111        


Q ss_pred             ----------------------------------------CeEEEEecCCeEEEEeCCCCcccc-cccc---------Cc
Q psy12911        171 ----------------------------------------PLAVVGTAGRGIVLYQLEGKPQEF-KKTE---------SP  200 (356)
Q Consensus       171 ----------------------------------------~~~~~~~~d~~i~i~d~~~~~~~~-~~~~---------~~  200 (356)
                                                              ..++..+. +.+.+.|+....... ....         ..
T Consensus       183 ~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~  261 (368)
T 1mda_H          183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNF  261 (368)
T ss_dssp             CTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred             CCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccc
Confidence                                                    11222222 455555554321110 0000         00


Q ss_pred             ccccceEEEeecCCCCCCCeEEEeec---------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeC
Q psy12911        201 LKYQNRCIAIFRDKKKQPAGYGLGSV---------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP  271 (356)
Q Consensus       201 ~~~~i~~~~~~~~~~~~~~~~~~~~~---------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp  271 (356)
                      .......++++|+    +..++++..         ++.+.++|+...  +.+..+....            ....++|+|
T Consensus       262 ~p~g~~~v~~s~d----g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~--~vv~~i~vg~------------~p~gi~~s~  323 (368)
T 1mda_H          262 RSAGFQMVAKLKN----TDGIMILTVEHSRSCLAAAENTSSVTASVG--QTSGPISNGH------------DSDAIIAAQ  323 (368)
T ss_dssp             EECSSSCEEEETT----TTEEEEEEEECSSCTTSCEEEEEEEESSSC--CEEECCEEEE------------EECEEEECC
T ss_pred             ccCcceeeEEcCC----CCEEEEEeccccCcccccCCCEEEEECCCC--eEEEEEECCC------------CcceEEECC
Confidence            1111223778888    566665533         235669888766  5566666554            478999999


Q ss_pred             CCC-EEEEEc-CCCeEEEEEcCcceecCCCCCCccceEEEEECC
Q psy12911        272 VHG-TLATVG-SEGTFSFWDKDARTKLKPSEAMDMSISTCALNH  313 (356)
Q Consensus       272 ~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  313 (356)
                      ||+ ++++.. .++.|.++|+.+++.+.++..... ...+++.+
T Consensus       324 Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          324 DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred             CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence            997 566666 589999999999999998875443 35666654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.49  E-value=6.2e-12  Score=115.18  Aligned_cols=239  Identities=14%  Similarity=0.094  Sum_probs=149.5

Q ss_pred             CCCCCCeeEEEecCCCCCceEEEEE-----eCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC--
Q psy12911         26 SPPEDSISCMAFSPSTLPQYFLIAG-----SWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK--   98 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~~~~~~~l~~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--   98 (356)
                      .+|...+..++|||||   ++||.+     +....|++||+.++. .....+.  ......++|+ |++.|+.++.+.  
T Consensus       125 ~~~~~~l~~~~~SpDg---~~lAy~~~~~G~~~~~i~v~dl~tg~-~~~~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~  197 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDG---RILAYSLSLAGSDWREIHLMDVESKQ-PLETPLK--DVKFSGISWL-GNEGFFYSSYDKPD  197 (693)
T ss_dssp             TTSCCEEEEEEECTTS---SEEEEEEECSSCCEEEEEEEETTTCS-EEEEEEE--EEESCCCEEE-TTTEEEEEESSCCC
T ss_pred             CCCcEEEEEEEECCCC---CEEEEEEecCCCceEEEEEEECCCCC-CCccccC--CceeccEEEe-CCCEEEEEEecCcc
Confidence            3466689999999999   888743     233579999999843 2222221  1123678999 999999888774  


Q ss_pred             -----------eEEEEEcCCCce--eee---cc-cCCCeeEEEEEeCCCCCeEEEEEC----CCeEEEEeCCCCC-ceEE
Q psy12911         99 -----------TVKCWDLASNQS--MQV---AQ-HDAPVKTCHWIKAPNYTCLMTGSW----DKTLKFWDLRTPQ-PIMT  156 (356)
Q Consensus        99 -----------~i~vwd~~~~~~--~~~---~~-~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~  156 (356)
                                 .|++|++.++..  ..+   .. |...+..+.|+  +||++|+....    +..|+++|+.++. ....
T Consensus       198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~  275 (693)
T 3iuj_A          198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT--EDDRFLLISAANSTSGNRLYVKDLSQENAPLLT  275 (693)
T ss_dssp             -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC--TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred             cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc--CCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence                       499999987653  122   22 44557888999  99998765442    2589999998764 3445


Q ss_pred             EeCCCe--eEEEecCCCeEEEEec----CCeEEEEeCCCCccc-cccccCcccccceEEEeecCCCCCCCeEEEee-cCC
Q psy12911        157 INLPER--CYCADVDYPLAVVGTA----GRGIVLYQLEGKPQE-FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS-VEG  228 (356)
Q Consensus       157 ~~~~~~--~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg  228 (356)
                      +..+..  ...+...+..++..+.    .+.|..+|+.+.... ...+. ++...+.  .++++    +..|+... .++
T Consensus       276 l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~----g~~lv~~~~~~g  348 (693)
T 3iuj_A          276 VQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSG----SGYLFAEYMVDA  348 (693)
T ss_dssp             EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEE----TTEEEEEEEETT
T ss_pred             EeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEE----CCEEEEEEEECC
Confidence            544332  2235566665555443    368999999876431 11111 2333333  78888    55666555 454


Q ss_pred             --eEEEEEeCCCCCCCcceeee-ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC----CeEEEEEcCcce
Q psy12911        229 --RVAIQYVNPANPKDNFTFKC-HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE----GTFSFWDKDART  294 (356)
Q Consensus       229 --~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d----g~i~iwd~~~~~  294 (356)
                        .|++|+++..   ....+.. ...           .+..+.++|++..|+....+    +.|+.||+.+++
T Consensus       349 ~~~l~~~d~~g~---~~~~l~~p~~~-----------~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          349 TARVEQFDYEGK---RVREVALPGLG-----------SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEEEECTTSC---EEEEECCSSSS-----------EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             eeEEEEEECCCC---eeEEeecCCCc-----------eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence              4666666532   2222221 111           46777888888766655444    789999987764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.46  E-value=2.3e-10  Score=93.57  Aligned_cols=233  Identities=9%  Similarity=-0.021  Sum_probs=152.7

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS  107 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  107 (356)
                      +...+.++++.+++   .+.++...++.|..||...  ......+......+.++++.++|+++++...++.|..+|.. 
T Consensus        60 ~~~~~~~i~~~~~g---~l~v~~~~~~~v~~~d~~g--~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-  133 (300)
T 2qc5_A           60 PDAKVMCLIVSSLG---DIWFTENGANKIGKLSKKG--GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-  133 (300)
T ss_dssp             TTCCEEEEEECTTS---CEEEEETTTTEEEEECTTS--CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-
T ss_pred             CCCcceeEEECCCC---CEEEEecCCCeEEEECCCC--CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-
Confidence            34678999999998   7777766678999999772  22222333344678999999999887777768899999987 


Q ss_pred             Cceeee--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC---C--eeEEEecCCCeEEEEecCC
Q psy12911        108 NQSMQV--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP---E--RCYCADVDYPLAVVGTAGR  180 (356)
Q Consensus       108 ~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~d~  180 (356)
                      ++...+  ......+..+++.  ++++++++...++.|..+|. +++... +..+   .  ..++++.++...++....+
T Consensus       134 g~~~~~~~~~~~~~~~~i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  209 (300)
T 2qc5_A          134 GTIYEYDLPNKGSYPAFITLG--SDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGN  209 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEEC--TTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred             CCEEEccCCCCCCCceeEEEC--CCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCC
Confidence            655432  2245678899998  88887666666789999998 555443 3321   1  2344555555555555567


Q ss_pred             eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCccc
Q psy12911        181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQD  260 (356)
Q Consensus       181 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      .|.+||.... ...... ......+.++++.++    +.++++...++.|..++.+.   . ...+.....         
T Consensus       210 ~i~~~~~~g~-~~~~~~-~~~~~~~~~i~~d~~----g~l~v~~~~~~~i~~~~~~g---~-~~~~~~~~~---------  270 (300)
T 2qc5_A          210 KIGRITTTGE-ISEYDI-PTPNARPHAITAGKN----SEIWFTEWGANQIGRITNDN---T-IQEYQLQTE---------  270 (300)
T ss_dssp             EEEEECTTCC-EEEEEC-SSTTCCEEEEEECST----TCEEEEETTTTEEEEECTTS---C-EEEEECCST---------
T ss_pred             EEEEEcCCCc-EEEEEC-CCCCCCceEEEECCC----CCEEEeccCCCeEEEECCCC---c-EEEEECCcc---------
Confidence            8999998432 211111 122355788999888    66666655678898887632   1 222211100         


Q ss_pred             ccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        261 IYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       261 ~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      ...+.++++.++|++.++.. . .|..+|.+
T Consensus       271 ~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          271 NAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             TCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             CCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            01578899999998777665 5 77777753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.46  E-value=2.9e-11  Score=99.43  Aligned_cols=228  Identities=10%  Similarity=0.005  Sum_probs=147.0

Q ss_pred             eeeccCCcceeEEEEccCCC-eEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeC
Q psy12911         70 KSMQGMSEPVLDVAWIDDGT-KVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL  148 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~  148 (356)
                      ..+...........|+++++ ++++...++.|..|+. +++...+..+...+..+++.  ++|+++++...++.|.+||.
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d--~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVD--AQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEEC--TTSCEEEEETTTTEEEEECT
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeEC--CCCCEEEEECCCCEEEEECC
Confidence            34444555677899999998 5666677899999998 45554455566778999999  89987666555688999997


Q ss_pred             CCCCceEEEeC-C------CeeEEEecCCCeEEE----Eec-------------CCeEEEEeCCCCccccccccCccccc
Q psy12911        149 RTPQPIMTINL-P------ERCYCADVDYPLAVV----GTA-------------GRGIVLYQLEGKPQEFKKTESPLKYQ  204 (356)
Q Consensus       149 ~~~~~~~~~~~-~------~~~~~~~~~~~~~~~----~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~  204 (356)
                      . ++....... .      ...+.++.++...++    +..             .+.|..+|..++......    ....
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----~~~~  189 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----DLDH  189 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----EESS
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----cCCC
Confidence            5 543222111 1      123566666666654    321             356777777555432211    2234


Q ss_pred             ceEEEeecCCCCCCCeEEEeecC------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEE
Q psy12911        205 NRCIAIFRDKKKQPAGYGLGSVE------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLAT  278 (356)
Q Consensus       205 i~~~~~~~~~~~~~~~~~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s  278 (356)
                      ...++++|+    +..++++...      +.|.+|+++...   +.........  .     ......+++.++|++.++
T Consensus       190 p~gl~~spd----g~~lyv~~~~~~~~~~~~i~~~~~~~~~---l~~~~~~~~~--~-----~~~pdgi~~d~~G~lwv~  255 (305)
T 3dr2_A          190 PNGLAFSPD----EQTLYVSQTPEQGHGSVEITAFAWRDGA---LHDRRHFASV--P-----DGLPDGFCVDRGGWLWSS  255 (305)
T ss_dssp             EEEEEECTT----SSEEEEEECCC---CCCEEEEEEEETTE---EEEEEEEECC--S-----SSCCCSEEECTTSCEEEC
T ss_pred             CcceEEcCC----CCEEEEEecCCcCCCCCEEEEEEecCCC---ccCCeEEEEC--C-----CCCCCeEEECCCCCEEEe
Confidence            578999999    6767666654      689999886532   1111111000  0     003457899999995554


Q ss_pred             EcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        279 VGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      . .+ .|.+|+.. ++.+..+..+. .+.+++|+++++.|..++.
T Consensus       256 ~-~~-gv~~~~~~-g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          256 S-GT-GVCVFDSD-GQLLGHIPTPG-TASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             C-SS-EEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEEEET
T ss_pred             c-CC-cEEEECCC-CCEEEEEECCC-ceeEEEEeCCCCEEEEEcC
Confidence            4 44 49999984 66666665444 5889999999998888774

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.45  E-value=5.6e-12  Score=105.45  Aligned_cols=173  Identities=18%  Similarity=0.181  Sum_probs=125.7

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC---------ceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG---------KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK  101 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  101 (356)
                      .++.+++++..   .++++|+.+ .+++|+++...         ... .....+.. |+.++|  |+++|+++ .++.|+
T Consensus        39 ~~nlLais~~~---gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSK---SLFVAASGS-KAVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALY  109 (388)
T ss_dssp             CCBCEEEETTT---TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred             cccEEEEcCCC---CEEEEeCCC-EEEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence            69999999998   899999987 56669876421         111 12223566 999999  88999998 889999


Q ss_pred             EEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCC
Q psy12911        102 CWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR  180 (356)
Q Consensus       102 vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  180 (356)
                      +||+.+..... ...|...+.++.+.  +.  .+++++.||.|.+||+.+++... +.  ..+.+++++.+.+++|..||
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~--~p--~~av~~~dG~L~v~dl~~~~~~~-~~--~~Vs~v~WSpkG~~vg~~dg  182 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNV--NN--TLVILNSVNDLSALDLRTKSTKQ-LA--QNVTSFDVTNSQLAVLLKDR  182 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEEC--SS--EEEEEETTSEEEEEETTTCCEEE-EE--ESEEEEEECSSEEEEEETTS
T ss_pred             EEEchhhhccCccceeecceeeEEec--CC--CEEEEECCCCEEEEEccCCcccc-cc--CCceEEEEcCCceEEEEcCC
Confidence            99998765433 55677788888876  33  28889999999999999887654 33  34445555554488999999


Q ss_pred             eEEEEeCCCCccc-cccc------c--CcccccceEEEeecCCCCCCCeEEE
Q psy12911        181 GIVLYQLEGKPQE-FKKT------E--SPLKYQNRCIAIFRDKKKQPAGYGL  223 (356)
Q Consensus       181 ~i~i~d~~~~~~~-~~~~------~--~~~~~~i~~~~~~~~~~~~~~~~~~  223 (356)
                      .+++|+....... ...+      .  ..+...+.++.|.++    ..++++
T Consensus       183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~----~~flv~  230 (388)
T 1xip_A          183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP----QDFLAV  230 (388)
T ss_dssp             CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS----SEEEEE
T ss_pred             cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC----CeEEEE
Confidence            9999998876531 1112      1  125678999999998    555554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.45  E-value=1.3e-13  Score=116.45  Aligned_cols=203  Identities=8%  Similarity=0.007  Sum_probs=119.5

Q ss_pred             CCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe--e-
Q psy12911         87 DGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER--C-  163 (356)
Q Consensus        87 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~-  163 (356)
                      ++..+++++.|+.|+.||..+|+.+..... +.+.+..+.  .++..+++++.||.|+.||..+++.+..+..+..  . 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~--~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTH--VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceE--cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            567899999999999999999998764333 556555555  6777888888999999999999988777654321  0 


Q ss_pred             EEEec-CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCC
Q psy12911        164 YCADV-DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKD  242 (356)
Q Consensus       164 ~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~  242 (356)
                      ..... .+..+++++.++.++.||.++++........   .   ...++|+    +..+++++.++.++.||.+.+  +.
T Consensus        85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~---~---~~~~~p~----~~~v~~~~~dg~v~a~d~~tG--~~  152 (369)
T 2hz6_A           85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA---F---ADSLSPS----TSLLYLGRTEYTITMYDTKTR--EL  152 (369)
T ss_dssp             TCSCC-----CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCSSSS--SC
T ss_pred             cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC---C---ccccccc----CCEEEEEecCCEEEEEECCCC--CE
Confidence            01111 3457788889999999999987654332211   1   2334454    678889999999999988766  45


Q ss_pred             cceeeeecCCCCCCCcccccceEEEEEeCCC---CEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCE
Q psy12911        243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH---GTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI  317 (356)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  317 (356)
                      ++.+..+.             ....+++++.   ..+++++.||.|+.||..+|+.+..++.....+....++++|..
T Consensus       153 ~W~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          153 RWNATYFD-------------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR  217 (369)
T ss_dssp             CCEEEEEE-------------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred             EEeEeccc-------------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence            55554322             1122233332   45677888999999999999988776533323344566777754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.44  E-value=1.1e-10  Score=95.83  Aligned_cols=236  Identities=8%  Similarity=-0.058  Sum_probs=154.1

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCce-EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQY-FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      ..++.+..+........|+|++   + +++++..++.|..|+...  ..  ..+..+...+..++++++|+++++...++
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~g---~~l~~~d~~~~~i~~~~~~g--~~--~~~~~~~~~~~gl~~d~dG~l~v~~~~~~  107 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEAQ---RTLVWSDLVGRRVLGWREDG--TV--DVLLDATAFTNGNAVDAQQRLVHCEHGRR  107 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGG---TEEEEEETTTTEEEEEETTS--CE--EEEEESCSCEEEEEECTTSCEEEEETTTT
T ss_pred             CceEEEecCCcCccCCeEeCCC---CEEEEEECCCCEEEEEeCCC--CE--EEEeCCCCccceeeECCCCCEEEEECCCC
Confidence            3455555566778899999998   6 677777889999998732  22  33444567789999999998776666678


Q ss_pred             eEEEEEcCCCceeeeccc-----CCCeeEEEEEeCCCCCeEEE----EEC-------------CCeEEEEeCCCCCceEE
Q psy12911         99 TVKCWDLASNQSMQVAQH-----DAPVKTCHWIKAPNYTCLMT----GSW-------------DKTLKFWDLRTPQPIMT  156 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~  156 (356)
                      .|.+|+.. ++...+..+     ...+.++++.  ++|+++++    |..             .+.|..+|..+++....
T Consensus       108 ~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~  184 (305)
T 3dr2_A          108 AITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM  184 (305)
T ss_dssp             EEEEECTT-SCEEEEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred             EEEEECCC-CCEEEEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence            99999986 554433221     2346789998  99988886    332             25688888877765433


Q ss_pred             EeC-CCeeEEEecCCCeEEEEecC------CeEEEEeCCCCccc-cccccCcccccceEEEeecCCCCCCCeEEEeecCC
Q psy12911        157 INL-PERCYCADVDYPLAVVGTAG------RGIVLYQLEGKPQE-FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG  228 (356)
Q Consensus       157 ~~~-~~~~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg  228 (356)
                      ... ....+++++++..++++...      +.|.+|++...... ..............+++.++    +. +.+++.+ 
T Consensus       185 ~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~----G~-lwv~~~~-  258 (305)
T 3dr2_A          185 ADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRG----GW-LWSSSGT-  258 (305)
T ss_dssp             EEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTT----SC-EEECCSS-
T ss_pred             ecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCC----CC-EEEecCC-
Confidence            221 12456777888877777665      78999998754311 01111112334567888888    66 4444444 


Q ss_pred             eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEE
Q psy12911        229 RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFS  286 (356)
Q Consensus       229 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~  286 (356)
                      .|.+|+.+.   +.+..+....            .+.+++|+|+++.|..++.++..+
T Consensus       259 gv~~~~~~g---~~~~~~~~~~------------~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          259 GVCVFDSDG---QLLGHIPTPG------------TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             EEEEECTTS---CEEEEEECSS------------CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             cEEEECCCC---CEEEEEECCC------------ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            477777642   3344444332            477899999998888777665333

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.44  E-value=7.3e-11  Score=95.21  Aligned_cols=217  Identities=7%  Similarity=-0.042  Sum_probs=137.1

Q ss_pred             CceEEeCCCC-CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccC-CcceeEEEEccCCCeEEEEcC-
Q psy12911         20 KDFEVVSPPE-DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM-SEPVLDVAWIDDGTKVFMAGC-   96 (356)
Q Consensus        20 ~~~~~~~~h~-~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~-   96 (356)
                      +.+-.+..+. ..+.++.++|+|   ++|+  +.++.|..||. + ++ .+..+..+ ...+.++.+.++|+.+++.+. 
T Consensus        26 ~~~w~~~~~~~~~~~~~~~~pdG---~ilv--s~~~~V~~~d~-~-G~-~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~   97 (276)
T 3no2_A           26 EIVWEYPLEKGWECNSVAATKAG---EILF--SYSKGAKMITR-D-GR-ELWNIAAPAGCEMQTARILPDGNALVAWCGH   97 (276)
T ss_dssp             EEEEEEECCTTCCCCEEEECTTS---CEEE--ECBSEEEEECT-T-SC-EEEEEECCTTCEEEEEEECTTSCEEEEEEST
T ss_pred             eEEEEeCCCccCCCcCeEECCCC---CEEE--eCCCCEEEECC-C-CC-EEEEEcCCCCccccccEECCCCCEEEEecCC
Confidence            3344444454 578999999999   8888  34778999998 4 33 33455543 357889999999999999887 


Q ss_pred             CCeEEEEEcCCCceee-ec------ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecC
Q psy12911         97 DKTVKCWDLASNQSMQ-VA------QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVD  169 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~-~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (356)
                      ++.|..+|. +++.+. +.      .+......+.+.  ++|+++++...++.|..||.. ++.+.++..+..       
T Consensus        98 ~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~--~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~-------  166 (276)
T 3no2_A           98 PSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN--KKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGT-------  166 (276)
T ss_dssp             TEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC--TTSCEEEEETTTTEEEEECTT-SCEEEEEECSSC-------
T ss_pred             CCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC--CCCCEEEEecCCCEEEEECCC-CCEEEEEECCCC-------
Confidence            778888886 455443 21      121234456666  999999999999999999987 888888765321       


Q ss_pred             CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH  249 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  249 (356)
                                                         +..+...++    +..++++..++.|..+|.+++  +.++++...
T Consensus       167 -----------------------------------~~~~~~~~~----g~~~v~~~~~~~v~~~d~~tG--~~~w~~~~~  205 (276)
T 3no2_A          167 -----------------------------------PFSSAFLDN----GDCLVACGDAHCFVQLNLESN--RIVRRVNAN  205 (276)
T ss_dssp             -----------------------------------CCEEEECTT----SCEEEECBTTSEEEEECTTTC--CEEEEEEGG
T ss_pred             -----------------------------------ccceeEcCC----CCEEEEeCCCCeEEEEeCcCC--cEEEEecCC
Confidence                                               122333444    455555555555555554433  444544432


Q ss_pred             cCCCCCCCcccccceEEEEEeCCCCEEEEEcCC--------CeEEEEEc-CcceecCCCCC
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE--------GTFSFWDK-DARTKLKPSEA  301 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d--------g~i~iwd~-~~~~~~~~~~~  301 (356)
                      .....     ....+..++..++|.++++....        +..+++++ .+++.+.++..
T Consensus       206 ~~~~~-----~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          206 DIEGV-----QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             GSBSC-----CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred             CCCCc-----cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence            21000     00147788888999888887321        23355555 45666655543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.42  E-value=5.2e-11  Score=108.51  Aligned_cols=257  Identities=9%  Similarity=0.036  Sum_probs=159.6

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeecc-CCcceeEEEEcc---CCCeEEEEc------CCCeEEEEEcCCCceeeec
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQG-MSEPVLDVAWID---DGTKVFMAG------CDKTVKCWDLASNQSMQVA  114 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~s~---~~~~l~~~~------~dg~i~vwd~~~~~~~~~~  114 (356)
                      ..+++++.|+.|..+|..++. .+-..-.. +......+..+|   ++ .++.++      .++.|..||..+|+.+...
T Consensus       122 g~v~v~~~dg~l~AlDa~TG~-~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          122 GKVYVGVLDGRLEAIDAKTGQ-RAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TEEEEECTTSEEEEEETTTCC-EEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CEEEEEccCCEEEEEECCCCC-EeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            578888899999999998843 33222111 111111111112   44 455543      3689999999999876421


Q ss_pred             c---c-----------------------------CCCeeEEEEEeCCCCCeEEEEECCCe-------------------E
Q psy12911        115 Q---H-----------------------------DAPVKTCHWIKAPNYTCLMTGSWDKT-------------------L  143 (356)
Q Consensus       115 ~---~-----------------------------~~~v~~~~~~~~~~~~~l~~~~~dg~-------------------i  143 (356)
                      .   .                             ......+++.  ++..+++.+..++.                   |
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d--~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v  277 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYD--PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI  277 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEE--TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEc--CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence            1   0                             0111256777  77888888887764                   9


Q ss_pred             EEEeCCCCCceEEEeCCC----------eeEE--EecCCC---eEEEEecCCeEEEEeCCCCccccccccCc--------
Q psy12911        144 KFWDLRTPQPIMTINLPE----------RCYC--ADVDYP---LAVVGTAGRGIVLYQLEGKPQEFKKTESP--------  200 (356)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~----------~~~~--~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------  200 (356)
                      ..+|.++++.+..++...          ..+.  +...+.   .++.++.+|.++++|.++++.........        
T Consensus       278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~  357 (689)
T 1yiq_A          278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD  357 (689)
T ss_dssp             EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred             EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence            999999999998887421          1111  223343   68888999999999999886532111000        


Q ss_pred             ------------------c----------c-ccceEEEeecCCCCCCCeEEEeec-------------------------
Q psy12911        201 ------------------L----------K-YQNRCIAIFRDKKKQPAGYGLGSV-------------------------  226 (356)
Q Consensus       201 ------------------~----------~-~~i~~~~~~~~~~~~~~~~~~~~~-------------------------  226 (356)
                                        .          . ..-..++++|+    ..++++...                         
T Consensus       358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~----~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g  433 (689)
T 1yiq_A          358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD----TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG  433 (689)
T ss_dssp             TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT----TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred             ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC----CCEEEEeccccceeeeeccccccccccccccccC
Confidence                              0          0 00122566666    344544322                         


Q ss_pred             --------------------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEE
Q psy12911        227 --------------------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFS  286 (356)
Q Consensus       227 --------------------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~  286 (356)
                                          +|.+..||+.++  +.+..+..+.            ++..-.+...+.+++.++.||.|+
T Consensus       434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG--~~~W~~~~~~------------~~~~g~~~tagglvf~gt~dg~l~  499 (689)
T 1yiq_A          434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ--QAAWEVPYVT------------IFNGGTLSTAGNLVFEGSADGRVI  499 (689)
T ss_dssp             SEECCCCSSHHHHHHHHTTCEEEEEEEETTTT--EEEEEEEESS------------SCCCCEEEETTTEEEEECTTSEEE
T ss_pred             ccccccCcccccCCCCCCCcceeEEEEECCCC--CeEeEccCCC------------CccCccceECCCEEEEECCCCcEE
Confidence                                367888888665  5566655543            233345566788999999999999


Q ss_pred             EEEcCcceecCCCCCCcc-ceEEEEECCCCC-EEEEEec
Q psy12911        287 FWDKDARTKLKPSEAMDM-SISTCALNHNGQ-IFAYAVS  323 (356)
Q Consensus       287 iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~-~l~~~s~  323 (356)
                      .||.++|+.+.+++...+ ...-+.|+.+|+ |+++.++
T Consensus       500 a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          500 AYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG  538 (689)
T ss_dssp             EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             EEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence            999999999988764432 223467788887 4555544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.42  E-value=3.3e-11  Score=110.36  Aligned_cols=227  Identities=13%  Similarity=0.145  Sum_probs=141.0

Q ss_pred             CCcceeEEEEccCCCeEEEE-----cCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCC--------
Q psy12911         75 MSEPVLDVAWIDDGTKVFMA-----GCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK--------  141 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--------  141 (356)
                      |...+..++|||||++||.+     +....|++||+.+++.+...-.......++|+   |++.|+.++.+.        
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws---Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL---GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE---TTTEEEEEESSCCC------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe---CCCEEEEEEecCcccccccc
Confidence            55678899999999988843     33368999999999876532121123567785   667788777764        


Q ss_pred             -----eEEEEeCCCCCc--eEEEeCCC------eeEEEecCCCeEEEEec----CCeEEEEeCCCCccccccccCccccc
Q psy12911        142 -----TLKFWDLRTPQP--IMTINLPE------RCYCADVDYPLAVVGTA----GRGIVLYQLEGKPQEFKKTESPLKYQ  204 (356)
Q Consensus       142 -----~i~iwd~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~  204 (356)
                           .|++|++.+++.  ...+....      ....+++++..++....    ...|.++|+.++......+... ...
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~-~~~  282 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD-LDA  282 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-SSS
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-CCc
Confidence                 399999987653  33333322      23456777776655432    3589999998764333332222 222


Q ss_pred             ceEEEeecCCCCCCCeEE-EeecC---CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        205 NRCIAIFRDKKKQPAGYG-LGSVE---GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       205 i~~~~~~~~~~~~~~~~~-~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                      .... ++++    +..++ ....+   +.|..++++.........+..+..           .+.  .|++++++|+...
T Consensus       283 ~~~~-~~~~----g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----------~~~--~~s~~g~~lv~~~  344 (693)
T 3iuj_A          283 DVSL-VDNK----GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-----------QVL--TVHSGSGYLFAEY  344 (693)
T ss_dssp             CEEE-EEEE----TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-----------SCE--EEEEETTEEEEEE
T ss_pred             eEEE-Eecc----CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-----------CEE--EEEEECCEEEEEE
Confidence            2333 5565    34444 44333   567788876653222345555554           343  8999998877665


Q ss_pred             C-CC--eEEEEEcCcceecCCCC-CCccceEEEEECCCCCEEEEEecc
Q psy12911        281 S-EG--TFSFWDKDARTKLKPSE-AMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       281 ~-dg--~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                      . ++  .|++||+..+.. ..+. ...+.+..+.++++++.|+...++
T Consensus       345 ~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss  391 (693)
T 3iuj_A          345 MVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFEN  391 (693)
T ss_dssp             EETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred             EECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecC
Confidence            4 44  689999885443 3332 244567888899999887766543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.41  E-value=1.9e-10  Score=96.64  Aligned_cols=232  Identities=8%  Similarity=-0.015  Sum_probs=142.0

Q ss_pred             EEc--cCCCeEEEE-cCCCeEEEEEcCCC----ceeeecc--------cCCCeeEEEEEeCCCCCeEEEEECC------C
Q psy12911         83 AWI--DDGTKVFMA-GCDKTVKCWDLASN----QSMQVAQ--------HDAPVKTCHWIKAPNYTCLMTGSWD------K  141 (356)
Q Consensus        83 ~~s--~~~~~l~~~-~~dg~i~vwd~~~~----~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~d------g  141 (356)
                      .++  +++++|+.. ..++.|.++|+.+.    +......        ....-..+...  |+| +++++..+      |
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~--pdG-i~Vs~~g~~~g~~~g  164 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCG--PDA-IYISALGNEEGEGPG  164 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEEC--SSC-EEEEEEEETTSCSCC
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeEC--CCe-EEEEcCCCcCCCCCC
Confidence            346  778877664 45889999999755    3333221        11134456666  888 77776655      7


Q ss_pred             eEEEEeCCCCCceEEEeCCCe----e--EEEecCCCeEEEEe-------------------cCCeEEEEeCCCCcccccc
Q psy12911        142 TLKFWDLRTPQPIMTINLPER----C--YCADVDYPLAVVGT-------------------AGRGIVLYQLEGKPQEFKK  196 (356)
Q Consensus       142 ~i~iwd~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~-------------------~d~~i~i~d~~~~~~~~~~  196 (356)
                      .|.++|..+.+.+.++.....    .  +.+++.++.+++..                   .+.+|.+||+.+++... .
T Consensus       165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~-t  243 (462)
T 2ece_A          165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH-S  243 (462)
T ss_dssp             EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE-E
T ss_pred             eEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee-E
Confidence            899999999999999874321    2  44567777777763                   47999999999864322 2


Q ss_pred             ccCc-ccccceEEEe--ecCCCCCCCeEEEee------cCCeEEEEEeCCCCCCCcceeeeec--CCCCC----CCccc-
Q psy12911        197 TESP-LKYQNRCIAI--FRDKKKQPAGYGLGS------VEGRVAIQYVNPANPKDNFTFKCHR--SNGGA----GGVQD-  260 (356)
Q Consensus       197 ~~~~-~~~~i~~~~~--~~~~~~~~~~~~~~~------~dg~i~i~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~-  260 (356)
                      +... .......+.|  +|+    +.++.+++      .+++|.+|..+.+.......+....  .....    .+... 
T Consensus       244 I~vg~~g~~P~~i~f~~~Pd----g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPT----KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTT----CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             EecCCCCCccceeEeeECCC----CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence            2221 1233445555  888    56666555      5668888777643222222211000  00000    00000 


Q ss_pred             ccceEEEEEeCCCCEEEEEcC-CCeEEEEEcCc---ceecCCCCCC--------------ccceEEEEECCCCCEEEEEe
Q psy12911        261 IYAVNGIVFHPVHGTLATVGS-EGTFSFWDKDA---RTKLKPSEAM--------------DMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       261 ~~~i~~i~~sp~~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~s  322 (356)
                      ......|.+||||++|.++.. .+.|.+||+..   .+.+..+...              .+.-..++++|||++|.++.
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            114778999999998877654 68999999863   2333333211              11357899999999999997

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.33  E-value=3e-10  Score=103.33  Aligned_cols=256  Identities=9%  Similarity=0.045  Sum_probs=161.3

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccC-C----cceeEEEEccCCCeEEEEcC------CCeEEEEEcCCCceeee
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM-S----EPVLDVAWIDDGTKVFMAGC------DKTVKCWDLASNQSMQV  113 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~----~~v~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~  113 (356)
                      ..|++++.|+.|..+|..++. .+ -.+..+ .    ..+.+--.. .+..++.++.      ++.|+.+|..+|+.+..
T Consensus       129 ~~v~v~~~dg~l~alD~~tG~-~~-W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          129 GKVYVGAWDGRLIALDAATGK-EV-WHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             TEEEEECTTSEEEEEETTTCC-EE-EEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCC-EE-eeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            578888899999999998843 32 222222 1    112211111 2345555543      69999999999987642


Q ss_pred             c-ccC--------------------------------CCeeEEEEEeCCCCCeEEEEECCC-------------------
Q psy12911        114 A-QHD--------------------------------APVKTCHWIKAPNYTCLMTGSWDK-------------------  141 (356)
Q Consensus       114 ~-~~~--------------------------------~~v~~~~~~~~~~~~~l~~~~~dg-------------------  141 (356)
                      . ...                                .....+++.  +++.+++.+..++                   
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d--~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~  283 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFD--AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA  283 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEE--TTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEc--CCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence            1 111                                011356777  7888888877664                   


Q ss_pred             eEEEEeCCCCCceEEEeCCC----------eeE--EEecCC---CeEEEEecCCeEEEEeCCCCccccccccCccc----
Q psy12911        142 TLKFWDLRTPQPIMTINLPE----------RCY--CADVDY---PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLK----  202 (356)
Q Consensus       142 ~i~iwd~~~~~~~~~~~~~~----------~~~--~~~~~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----  202 (356)
                      .|..+|.++++.+..++...          ...  ....++   ..+++++.+|.++++|.++++...........    
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            59999999999998877421          112  222355   57888999999999999988653322111000    


Q ss_pred             -----------------------------ccceEEEeecCCCCCCCeEEEeec---------------------------
Q psy12911        203 -----------------------------YQNRCIAIFRDKKKQPAGYGLGSV---------------------------  226 (356)
Q Consensus       203 -----------------------------~~i~~~~~~~~~~~~~~~~~~~~~---------------------------  226 (356)
                                                   ..-..++++|+    ..++++...                           
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~----~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  439 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ----TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG  439 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT----TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC----CCEEEEeChhcceeeecccccccccccccccccccc
Confidence                                         00024567776    455555433                           


Q ss_pred             ----------------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        227 ----------------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       227 ----------------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                                      .|.|..||+...  +.+..+....            ++....+..++.+++.++.||.+++||.
T Consensus       440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG--~~~W~~~~~~------------~~~~g~~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQ--KAAWSVEHVS------------PWNGGTLTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             CCCCEEECSSCCCSCCEEEEEEEETTTT--EEEEEEEESS------------SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cccccccccccCCCCCccEEEEEeCCCC--cEEeecCCCC------------CCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence                            267888887655  5555554322            3445556677888999999999999999


Q ss_pred             CcceecCCCCCCc-cceEEEEECCCCCEE-EEEec
Q psy12911        291 DARTKLKPSEAMD-MSISTCALNHNGQIF-AYAVS  323 (356)
Q Consensus       291 ~~~~~~~~~~~~~-~~v~~~~~s~~~~~l-~~~s~  323 (356)
                      .+++.+..+.... ....-+.|+.+|+.+ ++.++
T Consensus       506 ~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G  540 (677)
T 1kb0_A          506 ATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVG  540 (677)
T ss_dssp             TTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CCCceeeeeeCCCCcccCCEEEEeCCEEEEEEecc
Confidence            9999998876433 223345677888644 44443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.29  E-value=2.3e-09  Score=90.81  Aligned_cols=232  Identities=9%  Similarity=0.007  Sum_probs=142.6

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccC-------CcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccC
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM-------SEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHD  117 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  117 (356)
                      ..+++++.++.|..+|..++...-...+...       ...+.+. ...++..++.++.++.|..+|..+++.+......
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~  132 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA  132 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence            5788888899999999987432222222111       1222222 1224567888888999999999999877533322


Q ss_pred             CCee-EEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeE------EEecCCCeEEEEecCCeEEEEeCCCC
Q psy12911        118 APVK-TCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCY------CADVDYPLAVVGTAGRGIVLYQLEGK  190 (356)
Q Consensus       118 ~~v~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~d~~i~i~d~~~~  190 (356)
                      ..+. ....   . +..++.++.++.|..+|.++++.+..+.......      .....+..+++++.++.+..+|..++
T Consensus       133 ~~~~~~p~~---~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG  208 (376)
T 3q7m_A          133 GEALSRPVV---S-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQG  208 (376)
T ss_dssp             SCCCSCCEE---E-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTC
T ss_pred             CceEcCCEE---E-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCC
Confidence            2222 2222   2 3477788889999999999999988887654332      12223567888888999999999887


Q ss_pred             ccccccccCccccc--ceE---EEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceE
Q psy12911        191 PQEFKKTESPLKYQ--NRC---IAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVN  265 (356)
Q Consensus       191 ~~~~~~~~~~~~~~--i~~---~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  265 (356)
                      ..............  +..   +...|-  ..+..+++++.++.+..+|...+  +.+.....  .           ...
T Consensus       209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~v~~~~~~g~l~~~d~~tG--~~~w~~~~--~-----------~~~  271 (376)
T 3q7m_A          209 QMIWQQRISQATGSTEIDRLSDVDTTPV--VVNGVVFALAYNGNLTALDLRSG--QIMWKREL--G-----------SVN  271 (376)
T ss_dssp             CEEEEEECCC-----------CCCCCCE--EETTEEEEECTTSCEEEEETTTC--CEEEEECC--C-----------CEE
T ss_pred             cEEEEEecccCCCCcccccccccCCCcE--EECCEEEEEecCcEEEEEECCCC--cEEeeccC--C-----------CCC
Confidence            65433322110000  000   001110  00346778888999999988765  33433321  1           233


Q ss_pred             EEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC
Q psy12911        266 GIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE  300 (356)
Q Consensus       266 ~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  300 (356)
                      .+..  ++..|+.++.++.|..+|..+++.+....
T Consensus       272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          272 DFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             EEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             CceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence            4444  36677778889999999999998776544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.27  E-value=2.9e-09  Score=90.24  Aligned_cols=225  Identities=11%  Similarity=0.022  Sum_probs=142.6

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCe----
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV----  120 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v----  120 (356)
                      ..+++++.++.|..+|..++.. . ................  +..++.++.++.|..+|..+++.+........+    
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG~~-~-W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDGTV-A-WQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTCCE-E-EEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             CEEEEEcCCCEEEEEECCCCCE-E-EEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            4677888899999999987432 2 2222222111112222  447888888999999999999877643333222    


Q ss_pred             --eEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCee------------EEEecCCCeEEEEecCCeEEEEe
Q psy12911        121 --KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERC------------YCADVDYPLAVVGTAGRGIVLYQ  186 (356)
Q Consensus       121 --~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~d~~i~i~d  186 (356)
                        .....    .+..++.++.++.|..+|..+++.+.........            ......+..+++++.++.+..+|
T Consensus       180 ~~~~~~~----~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d  255 (376)
T 3q7m_A          180 GESAPTT----AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD  255 (376)
T ss_dssp             CCCCCEE----ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred             CCCCcEE----ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence              22222    2346788888999999999999988877644210            11112346788888899999999


Q ss_pred             CCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE
Q psy12911        187 LEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG  266 (356)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (356)
                      .++++.......    .....+...      +..+++++.++.+..+|...+  +.+.........          .+..
T Consensus       256 ~~tG~~~w~~~~----~~~~~~~~~------~~~l~~~~~~g~l~~~d~~tG--~~~w~~~~~~~~----------~~~~  313 (376)
T 3q7m_A          256 LRSGQIMWKREL----GSVNDFIVD------GNRIYLVDQNDRVMALTIDGG--VTLWTQSDLLHR----------LLTS  313 (376)
T ss_dssp             TTTCCEEEEECC----CCEEEEEEE------TTEEEEEETTCCEEEEETTTC--CEEEEECTTTTS----------CCCC
T ss_pred             CCCCcEEeeccC----CCCCCceEE------CCEEEEEcCCCeEEEEECCCC--cEEEeecccCCC----------cccC
Confidence            988765433221    112233332      457888888999999998765  334433211100          1222


Q ss_pred             EEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC
Q psy12911        267 IVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA  301 (356)
Q Consensus       267 i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  301 (356)
                      ...  .+..|+.++.+|.|.++|..+++.+.....
T Consensus       314 ~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          314 PVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             CEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            222  256788888999999999999988766554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.27  E-value=2.8e-12  Score=108.19  Aligned_cols=227  Identities=11%  Similarity=0.024  Sum_probs=119.5

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeec-ccCC-CeeE
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVA-QHDA-PVKT  122 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~-~v~~  122 (356)
                      ..+++++.||.|+.||..++. .. ..+..  +.+.+..+..++..+++++.|+.|+.||..+++.+... .+.. .+.+
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~-~~-W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGS-IK-WTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCC-EE-EEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             CEEEEEcCCCEEEEEECCCCC-EE-EEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            689999999999999998843 32 33433  45556556677878888889999999999988765422 1111 1110


Q ss_pred             EEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcc
Q psy12911        123 CHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPL  201 (356)
Q Consensus       123 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  201 (356)
                         +|.. .+..+++++.|+.|+.||.++++.+..+..+.. ....+.+..+++++.++.|..||.++++........  
T Consensus        86 ---sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~--  159 (369)
T 2hz6_A           86 ---SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF--  159 (369)
T ss_dssp             ---CSCC-----CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEEEE--
T ss_pred             ---CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-ccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc--
Confidence               1111 345678888899999999999998888776542 233446778999999999999999887643322110  


Q ss_pred             cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccce-EEEEEeCCCCEE----
Q psy12911        202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAV-NGIVFHPVHGTL----  276 (356)
Q Consensus       202 ~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~sp~~~~l----  276 (356)
                        .....++..+... ...+++++.+|.++.||.+.+  +.++.+....            ++ ....++++|...    
T Consensus       160 --~~~~~~~~~~~~~-~~~v~~~~~dg~v~a~d~~tG--~~~W~~~~~~------------pv~~~~~~~~dg~~~v~~~  222 (369)
T 2hz6_A          160 --DYAASLPEDDVDY-KMSHFVSNGDGLVVTVDSESG--DVLWIQNYAS------------PVVAFYVWQREGLRKVMHI  222 (369)
T ss_dssp             --EECCBCCCCCTTC-CCCEEEEETSCEEEEECTTTC--CEEEEEECSS------------CEEEEEECTTSSCEEECCE
T ss_pred             --cccCccccCCccc-cceEEEECCCCEEEEEECCCC--cEEEEecCCC------------ceEEEEEecCCceEeccce
Confidence              1112222222100 146778899999999998765  4555554322            33 334455666432    


Q ss_pred             EEEcCCCeEEEEEcCcce----ecCCCC
Q psy12911        277 ATVGSEGTFSFWDKDART----KLKPSE  300 (356)
Q Consensus       277 ~s~~~dg~i~iwd~~~~~----~~~~~~  300 (356)
                      +.+  ++.++.+|..+|+    .+..+.
T Consensus       223 ~~~--~~~l~~ld~~tG~~~~~~~W~~~  248 (369)
T 2hz6_A          223 NVA--VETLRYLTFMSGEVGRITKWKYP  248 (369)
T ss_dssp             EEE--HHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             eec--ccceeeeehhcCCcccceeeeec
Confidence            122  3456677776776    555443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.26  E-value=3.1e-09  Score=82.89  Aligned_cols=192  Identities=9%  Similarity=0.024  Sum_probs=120.7

Q ss_pred             eeEEEEccCCCeEEEEcCCC--eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEE-EECCCeEEEEeCCCCCceE
Q psy12911         79 VLDVAWIDDGTKVFMAGCDK--TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMT-GSWDKTLKFWDLRTPQPIM  155 (356)
Q Consensus        79 v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~  155 (356)
                      ...+.|+ ++.+..+.+.+|  .|+++|+.+++.+....-..........  .+++.|.. .-.++.+.+||..+.+.+.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit--~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGIS--DWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEE--EETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEE--EeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            4788998 666666666665  8999999999988744444444443333  23334444 4458899999999999999


Q ss_pred             EEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911        156 TINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV  235 (356)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  235 (356)
                      ++......+.++.++..++.+..++.|.++|..+.                                             
T Consensus       122 ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~---------------------------------------------  156 (262)
T 3nol_A          122 SFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESL---------------------------------------------  156 (262)
T ss_dssp             EEECSSCCCCEEECSSCEEECCSSSEEEEECTTTC---------------------------------------------
T ss_pred             EEECCCCceEEecCCCEEEEECCCCeEEEEcCCCC---------------------------------------------
Confidence            99876544444455555544444455555554432                                             


Q ss_pred             CCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC------------c
Q psy12911        236 NPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM------------D  303 (356)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~  303 (356)
                           +.+..+.......      ....++.+.|. +|+..+..-.+..|.+.|..+++.+..+...            .
T Consensus       157 -----~v~~~I~V~~~g~------~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~  224 (262)
T 3nol_A          157 -----TPVRTITVTAHGE------ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPI  224 (262)
T ss_dssp             -----SEEEEEECEETTE------ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSC
T ss_pred             -----eEEEEEEeccCCc------cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcC
Confidence                 2222222111000      00035667776 6776666667889999999999876654321            2


Q ss_pred             cceEEEEECCCCCEEEEEeccCCcCCCc
Q psy12911        304 MSISTCALNHNGQIFAYAVSYDWSKGHE  331 (356)
Q Consensus       304 ~~v~~~~~s~~~~~l~~~s~~d~~~~~~  331 (356)
                      ...+.+||+|+++.|..++ -.|.+.++
T Consensus       225 ~vlNGIA~dp~~~~lfVTG-K~Wp~~~e  251 (262)
T 3nol_A          225 DVLNGIAWDKEHHRLFVTG-KLWPKVFE  251 (262)
T ss_dssp             CCEEEEEEETTTTEEEEEE-TTCSEEEE
T ss_pred             CceEEEEEcCCCCEEEEEC-CCCCceEE
Confidence            3568999999998888886 34554433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.24  E-value=1.9e-08  Score=82.12  Aligned_cols=205  Identities=11%  Similarity=0.067  Sum_probs=125.3

Q ss_pred             CCcceeEEEEccCCC-eEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc
Q psy12911         75 MSEPVLDVAWIDDGT-KVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP  153 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  153 (356)
                      ...-..+..|++++. ++++...++.|..||..+++... ......+.+++++  ++++++++ . ++.|.+||..+++.
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~--~dG~l~v~-~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTMDAPVSSVALR--QSGGYVAT-I-GTKFCALNWKEQSA   85 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECSSCEEEEEEB--TTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-EeCCCceEEEEEC--CCCCEEEE-E-CCeEEEEECCCCcE
Confidence            334456889999554 55566668999999998876643 3345789999999  99985554 4 56799999876643


Q ss_pred             eEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec-------
Q psy12911        154 IMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV-------  226 (356)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------  226 (356)
                      ........                            .         .....+..+++.|+    +.++++...       
T Consensus        86 ~~~~~~~~----------------------------~---------~~~~~~~di~~d~d----G~l~~~~~~~~~~~~~  124 (297)
T 3g4e_A           86 VVLATVDN----------------------------D---------KKNNRFNDGKVDPA----GRYFAGTMAEETAPAV  124 (297)
T ss_dssp             EEEEECCT----------------------------T---------CSSEEEEEEEECTT----SCEEEEEEECCSBTTB
T ss_pred             EEEEecCC----------------------------C---------CCCCCCCCEEECCC----CCEEEecCCccccccc
Confidence            22211100                            0         01223466777777    554443322       


Q ss_pred             --CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEE-EEEcCCCeEEEEEc--Cccee-----c
Q psy12911        227 --EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTL-ATVGSEGTFSFWDK--DARTK-----L  296 (356)
Q Consensus       227 --dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l-~s~~~dg~i~iwd~--~~~~~-----~  296 (356)
                        .....+|.++... . ...+.....           ..+.++|+|+++.| ++.+.++.|.+|++  .++..     +
T Consensus       125 ~~~~~~~l~~~d~~g-~-~~~~~~~~~-----------~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~  191 (297)
T 3g4e_A          125 LERHQGALYSLFPDH-H-VKKYFDQVD-----------ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV  191 (297)
T ss_dssp             CCTTCEEEEEECTTS-C-EEEEEEEES-----------BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred             ccCCCcEEEEEECCC-C-EEEEeeccc-----------cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence              1334566665431 1 222222222           56899999999866 55566889999997  44432     3


Q ss_pred             CCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCcee
Q psy12911        297 KPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAI  341 (356)
Q Consensus       297 ~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~  341 (356)
                      ..+..+.+.+..++++++|++.++....+   ....+++..+..+
T Consensus       192 ~~~~~~~~~p~g~~~d~~G~lwva~~~~~---~v~~~d~~tG~~~  233 (297)
T 3g4e_A          192 YKLEKEEQIPDGMCIDAEGKLWVACYNGG---RVIRLDPVTGKRL  233 (297)
T ss_dssp             EECCGGGCEEEEEEEBTTSCEEEEEETTT---EEEEECTTTCCEE
T ss_pred             EECCCCCCCCCeeEECCCCCEEEEEcCCC---EEEEEcCCCceEE
Confidence            33444446778999999998777765322   2445666544433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.24  E-value=7.7e-10  Score=100.64  Aligned_cols=267  Identities=13%  Similarity=0.048  Sum_probs=162.0

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCc-----------ceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeee
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE-----------PVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV  113 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  113 (356)
                      ..|++++.++.|.-+|..++ +.+ -.+.....           ....+++  ++..|+.++.|+.|..+|..+|+.+..
T Consensus        78 g~vyv~~~~~~v~AlD~~tG-~~~-W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~  153 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTG-NRI-WTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH  153 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTT-EEE-EEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEECCCCeEEEEECCCC-cEE-EEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence            46777777889999999873 332 22221110           0112333  456888889999999999999998753


Q ss_pred             cc-c-C----CCeeEEEEEeCCCCCeEEEEEC------CCeEEEEeCCCCCceEEEeCCCe-------------------
Q psy12911        114 AQ-H-D----APVKTCHWIKAPNYTCLMTGSW------DKTLKFWDLRTPQPIMTINLPER-------------------  162 (356)
Q Consensus       114 ~~-~-~----~~v~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~-------------------  162 (356)
                      .. . .    ..+.+.-..  .+ ..++.++.      ++.|+.+|.++++.+..+.....                   
T Consensus       154 ~~~~~~~~~~~~~~~~p~v--~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~  230 (677)
T 1kb0_A          154 QNTFEGQKGSLTITGAPRV--FK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD  230 (677)
T ss_dssp             EETTTTCCSSCBCCSCCEE--ET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred             ecCCcCcCcCcccccCcEE--EC-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence            22 2 1    122221111  23 34555543      68999999999999888764221                   


Q ss_pred             ----------------eEEEecCCCeEEEEecCC-------------------eEEEEeCCCCccccccccCccc-----
Q psy12911        163 ----------------CYCADVDYPLAVVGTAGR-------------------GIVLYQLEGKPQEFKKTESPLK-----  202 (356)
Q Consensus       163 ----------------~~~~~~~~~~~~~~~~d~-------------------~i~i~d~~~~~~~~~~~~~~~~-----  202 (356)
                                      ...++.....++++..++                   .|..+|.++++.........+.     
T Consensus       231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~  310 (677)
T 1kb0_A          231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT  310 (677)
T ss_dssp             GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence                            234566677888877664                   5999999988765443332221     


Q ss_pred             --ccceEEEeecCCCCCC---CeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC-----CCC----------------
Q psy12911        203 --YQNRCIAIFRDKKKQP---AGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG-----GAG----------------  256 (356)
Q Consensus       203 --~~i~~~~~~~~~~~~~---~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-----~~~----------------  256 (356)
                        .....+....+    +   ..++.++.+|.++++|...+  +.+..+......-     ...                
T Consensus       311 ~~~~p~l~~~~~d----G~~~~~l~~~~~~G~l~~lD~~tG--~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~  384 (677)
T 1kb0_A          311 STQPMILADIKIA----GKPRKVILHAPKNGFFFVLDRTNG--KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD  384 (677)
T ss_dssp             CCSCCEEEEEEET----TEEEEEEEECCTTSEEEEEETTTC--CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred             cCCCcEEEecccC----CcEeeEEEEECCCCEEEEEECCCC--CEeccccccccCcccccCCCCceeeccccCcCCCccE
Confidence              12222232234    4   57889999999999998766  4444332111000     000                


Q ss_pred             ---CcccccceEEEEEeCCCCEEEEEcC-------------------------------------------CCeEEEEEc
Q psy12911        257 ---GVQDIYAVNGIVFHPVHGTLATVGS-------------------------------------------EGTFSFWDK  290 (356)
Q Consensus       257 ---~~~~~~~i~~i~~sp~~~~l~s~~~-------------------------------------------dg~i~iwd~  290 (356)
                         +......-..++++|++.++++...                                           .|.|..||+
T Consensus       385 ~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~  464 (677)
T 1kb0_A          385 AVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP  464 (677)
T ss_dssp             CSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET
T ss_pred             ECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC
Confidence               0000001135789999888877543                                           278999999


Q ss_pred             CcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        291 DARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      .+++.+..+. +..++....++.++..++.++.++
T Consensus       465 ~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg  498 (677)
T 1kb0_A          465 VAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADG  498 (677)
T ss_dssp             TTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTS
T ss_pred             CCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCC
Confidence            9999887765 333455566777888888886544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.22  E-value=7.8e-09  Score=94.07  Aligned_cols=270  Identities=13%  Similarity=0.095  Sum_probs=151.0

Q ss_pred             EEEecC-CCCCceEEEEEeCCC-----------eEEEEeccCCCceeeeeecc-CCcceeEEEEccCCCeEEEEcC-CCe
Q psy12911         34 CMAFSP-STLPQYFLIAGSWDN-----------NVRCWEVEPNGKTIPKSMQG-MSEPVLDVAWIDDGTKVFMAGC-DKT   99 (356)
Q Consensus        34 ~~~~~~-~~~~~~~l~~~~~dg-----------~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-dg~   99 (356)
                      ++++.+ ++   ++++.|+.+.           .+.+||..++.......+.. +.....++++..+++.++.|+. +..
T Consensus       190 ~~av~~~~g---~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~  266 (656)
T 1k3i_A          190 AAAIEPTSG---RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK  266 (656)
T ss_dssp             EEEEETTTT---EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             eEEEEecCC---EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCc
Confidence            566677 77   8888887543           58899998855443333322 3333446788889999999885 568


Q ss_pred             EEEEEcCCCceeeecc-c-CCCeeEEEEEeCCCCCeEEEEE-CC-----CeEEEEeCCCCCceEEE-----eC--CCeeE
Q psy12911        100 VKCWDLASNQSMQVAQ-H-DAPVKTCHWIKAPNYTCLMTGS-WD-----KTLKFWDLRTPQPIMTI-----NL--PERCY  164 (356)
Q Consensus       100 i~vwd~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~-----~~--~~~~~  164 (356)
                      +.+||..+.+...... . ...-.+++..  +++++++.|+ .+     ..+.+||..+++....-     ..  .....
T Consensus       267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~--~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~  344 (656)
T 1k3i_A          267 TSLYDSSSDSWIPGPDMQVARGYQSSATM--SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG  344 (656)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEEC--TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred             eEEecCcCCceeECCCCCccccccceEEe--cCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence            9999999877554322 1 1122334454  6899999998 34     46999999876532210     00  00001


Q ss_pred             EEecCCCeEEEEecC---------CeEEEEeCCCCccccccccCcc-------cccceEEEeecCCCCCCCeEEEeecCC
Q psy12911        165 CADVDYPLAVVGTAG---------RGIVLYQLEGKPQEFKKTESPL-------KYQNRCIAIFRDKKKQPAGYGLGSVEG  228 (356)
Q Consensus       165 ~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~dg  228 (356)
                      .+...+...+.++.+         ..+..||..+..-.........       .....++.+...   .+.++++|+.++
T Consensus       345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~---~~~i~v~GG~~~  421 (656)
T 1k3i_A          345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV---KGKILTFGGSPD  421 (656)
T ss_dssp             GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETT---TTEEEEECCBSS
T ss_pred             eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCC---CCeEEEEeCCCC
Confidence            111233344555443         4567888876542111100000       111233333221   156788887543


Q ss_pred             -----------eEEEEEeCCCCCCCcc--eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----------Ce
Q psy12911        229 -----------RVAIQYVNPANPKDNF--TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----------GT  284 (356)
Q Consensus       229 -----------~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----------g~  284 (356)
                                 .+.+||........+.  .+...+            .-.+++..|++++++.|+.+           ..
T Consensus       422 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R------------~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~  489 (656)
T 1k3i_A          422 YQDSDATTNAHIITLGEPGTSPNTVFASNGLYFAR------------TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFT  489 (656)
T ss_dssp             SSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCC------------BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred             CCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCc------------ccCCeEECCCCCEEEECCcccCcCcCCCCcccc
Confidence                       4555554433211110  111000            23355677899999999864           46


Q ss_pred             EEEEEcCcce--ecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        285 FSFWDKDART--KLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       285 i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      +.+||..+.+  .+..+...........+.|||+.++.|+.
T Consensus       490 v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          490 PEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             eEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            8999987764  23323222223344567799999999985

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.20  E-value=1.2e-08  Score=80.59  Aligned_cols=205  Identities=9%  Similarity=-0.066  Sum_probs=134.1

Q ss_pred             eeEEEEccCCCeEEEEcC--CCeEEEEEcCCCceeeecccCC--CeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce
Q psy12911         79 VLDVAWIDDGTKVFMAGC--DKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI  154 (356)
Q Consensus        79 v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  154 (356)
                      ...+.|++++.+.++.+.  ++.|.++|+.+++.+.......  ....+++.  . +.+.++.-.++.+.++|..+.+.+
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g-~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--N-EKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--T-TEEEEEETTCSEEEEEETTTTEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--C-CEEEEEEecCCEEEEEECCCCcEE
Confidence            579999998754444443  6899999999999877432222  23345554  3 344445556789999999999999


Q ss_pred             EEEeCC-CeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCccc---ccceEEEeecCCCCCCCeEEEeecCCeE
Q psy12911        155 MTINLP-ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLK---YQNRCIAIFRDKKKQPAGYGLGSVEGRV  230 (356)
Q Consensus       155 ~~~~~~-~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~dg~i  230 (356)
                      .++... ...+.+.+++..++++..++.|.++|..+.+...........   .....+.+. +    +..++....++.|
T Consensus       100 ~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d----g~lyvn~~~~~~V  174 (266)
T 2iwa_A          100 KNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N----GEVWANIWQTDCI  174 (266)
T ss_dssp             EEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T----TEEEEEETTSSEE
T ss_pred             EEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C----CEEEEecCCCCeE
Confidence            999866 556778888888888888899999999886543222211111   124566766 5    5555555567888


Q ss_pred             EEEEeCCCCCCCcceeeeecCCCC--CCCcccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcCcc
Q psy12911        231 AIQYVNPANPKDNFTFKCHRSNGG--AGGVQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       231 ~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~~~  293 (356)
                      .+.|....  +.+..+........  ..........+.|+|+|+++ +++++...+.|.+.++...
T Consensus       175 ~vID~~tg--~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          175 ARISAKDG--TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEETTTC--CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEECCCC--cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            88888766  45555543210000  00000001468999999985 5667777889999988754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.20  E-value=2.4e-08  Score=84.09  Aligned_cols=233  Identities=16%  Similarity=0.108  Sum_probs=142.7

Q ss_pred             CCCCCceEEEEEeCCCeEEEEeccCCC--ceeeeeec------c-CCcceeEEEEccCCCeEEEEcCC------CeEEEE
Q psy12911         39 PSTLPQYFLIAGSWDNNVRCWEVEPNG--KTIPKSMQ------G-MSEPVLDVAWIDDGTKVFMAGCD------KTVKCW  103 (356)
Q Consensus        39 ~~~~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~------~-~~~~v~~~~~s~~~~~l~~~~~d------g~i~vw  103 (356)
                      +++  ..+++.+..++.|.|+|+.+..  ..+.+.+.      . -...-..+..+|+| .++++..+      +.|.++
T Consensus        93 ~~r--~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IER--RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCS--CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEE
T ss_pred             ccC--CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEE
Confidence            666  2445556678899999997532  23334441      1 11245667888999 66665555      789999


Q ss_pred             EcCCCceeeecc---cC-CCeeEEEEEeCCCCCeEEEEE-------------------CCCeEEEEeCCCCCceEEEeCC
Q psy12911        104 DLASNQSMQVAQ---HD-APVKTCHWIKAPNYTCLMTGS-------------------WDKTLKFWDLRTPQPIMTINLP  160 (356)
Q Consensus       104 d~~~~~~~~~~~---~~-~~v~~~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~~  160 (356)
                      |.++.+.+....   .. .--+.+-|+  |+++.+++..                   .+.+|.+||+.+++.+.++...
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~--p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWN--LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEE--TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred             ECCCCeEEEEEccCCCCccccceEEEC--CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence            999998876332   11 224567888  9999888874                   3689999999999888888875


Q ss_pred             C---ee--EE--EecCCCeEEEEec------CCeEEEEeCCCCccccccc---cC-----c----------ccccceEEE
Q psy12911        161 E---RC--YC--ADVDYPLAVVGTA------GRGIVLYQLEGKPQEFKKT---ES-----P----------LKYQNRCIA  209 (356)
Q Consensus       161 ~---~~--~~--~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~---~~-----~----------~~~~i~~~~  209 (356)
                      .   ..  +.  +++++.++++++.      +++|.+|....+.......   ..     .          .......+.
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence            2   22  22  3666777777664      5688766554321100000   00     0          024578899


Q ss_pred             eecCCCCCCCeEEEee-cCCeEEEEEeC-CCCCCCcceeeeecCCC---CCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        210 IFRDKKKQPAGYGLGS-VEGRVAIQYVN-PANPKDNFTFKCHRSNG---GAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       210 ~~~~~~~~~~~~~~~~-~dg~i~i~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                      ++++    +++|.++. ..+.|.+||+. ...++.+..+.......   ...+......-..++++|||++|+++.
T Consensus       328 lS~D----GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          328 ISLD----DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ECTT----SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ECCC----CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999    66666555 47899999985 32333333333221000   000000001246789999999999887

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.20  E-value=1.4e-07  Score=75.65  Aligned_cols=249  Identities=7%  Similarity=-0.066  Sum_probs=150.3

Q ss_pred             eEEEEEeCCCeEEEEeccCCCcee---eeeeccCCcceeEEEEccCCCeEEEEc-CCCeEEEEEcCCCceeeec-ccCCC
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTI---PKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWDLASNQSMQVA-QHDAP  119 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~-~~~~~  119 (356)
                      .+|+.+.. +.|+.++++......   ...+......+..++|+++++.|+.+. .++.|.++++.++....+. .....
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            45666554 478889987632211   011221234678999999766665544 5789999999876544433 22356


Q ss_pred             eeEEEEEeCCCCCeEE-EEECCCeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEec---CCeEEEEeCCCCcc
Q psy12911        120 VKTCHWIKAPNYTCLM-TGSWDKTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGTA---GRGIVLYQLEGKPQ  192 (356)
Q Consensus       120 v~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~  192 (356)
                      ...+++.  +++..|+ +-...+.|.++++............   ...+++++.+..++++..   .+.|..+++.....
T Consensus        81 p~~ia~d--~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~  158 (267)
T 1npe_A           81 PEGIALD--HLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (267)
T ss_dssp             EEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccEEEEE--ecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence            7899998  7654444 4455678999998654332222221   234566666666666554   36888888875432


Q ss_pred             ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCC
Q psy12911        193 EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV  272 (356)
Q Consensus       193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~  272 (356)
                      .... . ........+++.++.   +.++++-...+.|.+++.+...  ....+....            ....++.. .
T Consensus       159 ~~~~-~-~~~~~P~gia~d~~~---~~lyv~d~~~~~I~~~~~~g~~--~~~~~~~~~------------~P~gi~~d-~  218 (267)
T 1npe_A          159 RILA-Q-DNLGLPNGLTFDAFS---SQLCWVDAGTHRAECLNPAQPG--RRKVLEGLQ------------YPFAVTSY-G  218 (267)
T ss_dssp             EEEE-C-TTCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTEEE--EEEEEECCC------------SEEEEEEE-T
T ss_pred             EEEE-E-CCCCCCcEEEEcCCC---CEEEEEECCCCEEEEEecCCCc--eEEEecCCC------------CceEEEEe-C
Confidence            1111 1 112356889999872   3345555567889998886431  111111111            23566654 3


Q ss_pred             CCEEEEEcCCCeEEEEEcCcceecCCCCCCc-cceEEEEECCCCC
Q psy12911        273 HGTLATVGSEGTFSFWDKDARTKLKPSEAMD-MSISTCALNHNGQ  316 (356)
Q Consensus       273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~  316 (356)
                      +.++++....+.|.++|..+++.+..+.... .....+++.|++.
T Consensus       219 ~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          219 KNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            4455555567899999999998887775433 2467788888764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.20  E-value=4.8e-09  Score=91.31  Aligned_cols=233  Identities=9%  Similarity=0.026  Sum_probs=149.8

Q ss_pred             eEEEEcc-----CCCeEEEEcC-CCeEEEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEEC------------
Q psy12911         80 LDVAWID-----DGTKVFMAGC-DKTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSW------------  139 (356)
Q Consensus        80 ~~~~~s~-----~~~~l~~~~~-dg~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~------------  139 (356)
                      ...+.|.     ||++++.... ++.|.+.|+.+.++..  ..........+++..-|++.+++++++            
T Consensus        88 hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l  167 (595)
T 1fwx_A           88 HHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM  167 (595)
T ss_dssp             CCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred             CccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccc
Confidence            3455555     8888877665 5679999999998776  223345577777742278888888852            


Q ss_pred             ------CCeEEEEeCCCCCceEEEeCCC--eeEEEecCCCeEEEEecCC-------------------------------
Q psy12911        140 ------DKTLKFWDLRTPQPIMTINLPE--RCYCADVDYPLAVVGTAGR-------------------------------  180 (356)
Q Consensus       140 ------dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~-------------------------------  180 (356)
                            ++.+.+.|..+.+.+.++....  ..+.+++++.++++.+.+.                               
T Consensus       168 ~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~  247 (595)
T 1fwx_A          168 EDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  247 (595)
T ss_dssp             TCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             ccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence                  4579999999998888877433  3456777777777766442                               


Q ss_pred             -------eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCC------CCCccee
Q psy12911        181 -------GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPAN------PKDNFTF  246 (356)
Q Consensus       181 -------~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~------~~~~~~~  246 (356)
                             .|.+.|.++..........+......++.++||    +.++ +++..+..+.++|+....      .......
T Consensus       248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPD----Gk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v  323 (595)
T 1fwx_A          248 GDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPD----KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  323 (595)
T ss_dssp             TCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTT----SSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred             CCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCC----CCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence                   366666665211010011123346788999999    5555 445578899999997431      0111111


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc----------ceecCCCCCCccc-----eEEEEE
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA----------RTKLKPSEAMDMS-----ISTCAL  311 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~-----v~~~~~  311 (356)
                      ...-..+        .....++|+|+|...++.-.|+.|.+||+.+          .+.+.++..|-.+     -.++.+
T Consensus       324 ~~~v~vG--------~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~  395 (595)
T 1fwx_A          324 VAEPELG--------LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETL  395 (595)
T ss_dssp             EECCBCC--------SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred             EEEcCCC--------CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEe
Confidence            1111100        1577899999995556777899999999987          3445555544332     123467


Q ss_pred             CCCCCEEEEEecc
Q psy12911        312 NHNGQIFAYAVSY  324 (356)
Q Consensus       312 s~~~~~l~~~s~~  324 (356)
                      +|||++|+++...
T Consensus       396 ~~DGk~l~~~Nk~  408 (595)
T 1fwx_A          396 DATNDWLVCLSKF  408 (595)
T ss_dssp             TCCSSEEEEEESC
T ss_pred             CCCCCEEEEcCCC
Confidence            8999999998753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.15  E-value=2.9e-09  Score=88.85  Aligned_cols=223  Identities=12%  Similarity=-0.025  Sum_probs=130.3

Q ss_pred             eEEEEEcCCCceeeec-ccCCCeeEEEEEeCCCCCeEEEEE----------CCCeEEEEeCCCCCceEEEeCC-------
Q psy12911         99 TVKCWDLASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGS----------WDKTLKFWDLRTPQPIMTINLP-------  160 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~-------  160 (356)
                      +|.++|..+++.+... ....+  .+.++  ||++.++++.          .++.|.+||+.+++.+.++..+       
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~s--pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~  122 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAG--HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEEC--TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEEC--CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence            8899999999988733 23334  79999  9999998886          3688999999999999998754       


Q ss_pred             ---CeeEEEecCCCeEEEEec--CCeEEE--EeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC------
Q psy12911        161 ---ERCYCADVDYPLAVVGTA--GRGIVL--YQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE------  227 (356)
Q Consensus       161 ---~~~~~~~~~~~~~~~~~~--d~~i~i--~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d------  227 (356)
                         ...+.+++++.+++++..  ...+.+  +|..+ .   ..+..+  .   +..+.|++   ...+++.+.|      
T Consensus       123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v---~~i~v~--~---~~~~~p~g---~~~~~~~~~dg~~~~v  190 (368)
T 1mda_H          123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-D---QLTKSA--S---CFHIHPGA---AATHYLGSCPASLAAS  190 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-E---EEEECS--S---CCCCEEEE---TTEEECCCCTTSCEEE
T ss_pred             CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-c---eEEECC--C---ceEEccCC---CeEEEEEcCCCCEEEE
Confidence               347888999999888864  467888  88865 1   111100  0   01111211   1112222223      


Q ss_pred             ----------------------------------------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEE
Q psy12911        228 ----------------------------------------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGI  267 (356)
Q Consensus       228 ----------------------------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  267 (356)
                                                              +.+.+.|......+.+..+..........+ ........+
T Consensus       191 d~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~-~~p~g~~~v  269 (368)
T 1mda_H          191 DLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADN-FRSAGFQMV  269 (368)
T ss_dssp             ECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTT-EEECSSSCE
T ss_pred             ECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccc-cccCcceee
Confidence                                                    444444443211110000000000000000 000012227


Q ss_pred             EEeCCCCEEEEEcC---------CCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCC
Q psy12911        268 VFHPVHGTLATVGS---------EGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKG  338 (356)
Q Consensus       268 ~~sp~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~  338 (356)
                      +++|+++.++.+..         ++.+.++|+.+++.+.++.... ....++|+|||++++++... -+....++|....
T Consensus       270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~-~~~~VsVID~~t~  347 (368)
T 1mda_H          270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSA-GTEVLDIYDAASD  347 (368)
T ss_dssp             EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEET-TTTEEEEEESSSC
T ss_pred             EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccC-CCCeEEEEECCCC
Confidence            89999987776533         2356699999999998887433 67899999999866555531 0234445555544


Q ss_pred             ce
Q psy12911        339 NA  340 (356)
Q Consensus       339 ~~  340 (356)
                      +.
T Consensus       348 kv  349 (368)
T 1mda_H          348 QD  349 (368)
T ss_dssp             EE
T ss_pred             cE
Confidence            33

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.14  E-value=5.7e-07  Score=73.67  Aligned_cols=226  Identities=11%  Similarity=-0.001  Sum_probs=138.3

Q ss_pred             cceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC--CeEEEEeCCCCCce
Q psy12911         77 EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD--KTLKFWDLRTPQPI  154 (356)
Q Consensus        77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~  154 (356)
                      .....++|+++++.+++-..++.|..||.... .............+++.  ++++++++....  ..|..+|..+++..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~--~dG~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFT--SNGDLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEEC--TTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEc--CCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence            45778999999987777667899999998764 33333334568899998  888866655432  24777787777654


Q ss_pred             EEEeCCC----eeEEEecCCCeEEEEe-cCCeEEEEeCCCCcccccc--------ccCcccccceEEEeecCCCCCCC-e
Q psy12911        155 MTINLPE----RCYCADVDYPLAVVGT-AGRGIVLYQLEGKPQEFKK--------TESPLKYQNRCIAIFRDKKKQPA-G  220 (356)
Q Consensus       155 ~~~~~~~----~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~~~~-~  220 (356)
                      .......    ...+. ..+..+++.. .++.|..+|...+......        .....-.....+  +++    +. +
T Consensus       109 ~~~~~~~~~~~~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d----g~~l  181 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF----GNFL  181 (306)
T ss_dssp             EEEECTTCSCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE----TTEE
T ss_pred             EEEeCCCccccCcccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC----CCEE
Confidence            3333221    11222 2334444444 5789999998754211100        000011123444  666    44 4


Q ss_pred             EEEeecCCeEEEEEeCC-CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee--cC
Q psy12911        221 YGLGSVEGRVAIQYVNP-ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK--LK  297 (356)
Q Consensus       221 ~~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~--~~  297 (356)
                      +++-...+.|..++++. ........+... .           ....++++++|+++++....+.|.++|.. ++.  +.
T Consensus       182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~-----------~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~  248 (306)
T 2p4o_A          182 YVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-T-----------NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIA  248 (306)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCCCEEEEES-C-----------CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEE
T ss_pred             EEEeCCCCEEEEEEeCCCCCCCccEEEecc-C-----------CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEe
Confidence            55556678899999875 211111122111 1           35678999999988887778899999976 554  32


Q ss_pred             CCCCCccceEEEEEC---CCCCEEEEEeccC
Q psy12911        298 PSEAMDMSISTCALN---HNGQIFAYAVSYD  325 (356)
Q Consensus       298 ~~~~~~~~v~~~~~s---~~~~~l~~~s~~d  325 (356)
                      .+.......++++|.   ||++.|..++...
T Consensus       249 ~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          249 QAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            333333567899999   8988887776543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.14  E-value=8.1e-09  Score=94.13  Aligned_cols=285  Identities=12%  Similarity=0.044  Sum_probs=164.0

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCc----------ce-eEEEEccCCCeEEEEcCCCeEEEEEcCCCceeee
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE----------PV-LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV  113 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~----------~v-~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  113 (356)
                      ..|++++.++.|.-+|..++. .+ -.+.....          .+ ..+..  .+..|++++.|+.|..+|..+|+.+..
T Consensus        71 g~vyv~~~~~~v~AlD~~tG~-~~-W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~  146 (689)
T 1yiq_A           71 GVMYTTGPFSVVYALDARDGR-LI-WKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS  146 (689)
T ss_dssp             TEEEEECGGGCEEEEETTTCC-EE-EEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCc-ee-EEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee
Confidence            567778888999999998843 33 22221111          00 11222  356888888999999999999998752


Q ss_pred             cccC---CCeeEEEEEeC-CCCCeEEEEE------CCCeEEEEeCCCCCceEEEeCCC----------------------
Q psy12911        114 AQHD---APVKTCHWIKA-PNYTCLMTGS------WDKTLKFWDLRTPQPIMTINLPE----------------------  161 (356)
Q Consensus       114 ~~~~---~~v~~~~~~~~-~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~----------------------  161 (356)
                      ....   .....+..+|. .++. ++.++      .+|.|+.||.++++.+..+....                      
T Consensus       147 ~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  225 (689)
T 1yiq_A          147 VDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD  225 (689)
T ss_dssp             EECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred             ecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence            2211   11111111100 2444 44443      36899999999999988776310                      


Q ss_pred             ------------eeEEEecCCCeEEEEecCCe-------------------EEEEeCCCCccccccccCccc-------c
Q psy12911        162 ------------RCYCADVDYPLAVVGTAGRG-------------------IVLYQLEGKPQEFKKTESPLK-------Y  203 (356)
Q Consensus       162 ------------~~~~~~~~~~~~~~~~~d~~-------------------i~i~d~~~~~~~~~~~~~~~~-------~  203 (356)
                                  ....++.....+++++.++.                   |..+|.++++.........+.       .
T Consensus       226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~  305 (689)
T 1yiq_A          226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ  305 (689)
T ss_dssp             THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence                        12445556678888887764                   999999998765544332221       1


Q ss_pred             cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeec-------C----------------CCC-----C
Q psy12911        204 QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHR-------S----------------NGG-----A  255 (356)
Q Consensus       204 ~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-------~----------------~~~-----~  255 (356)
                      .........+++. ...++.++.+|.++++|...+  +.+...+...       .                ...     .
T Consensus       306 ~~~l~d~~~~G~~-~~~v~~~~~~G~l~~lD~~tG--~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~  382 (689)
T 1yiq_A          306 HMILAELPIDGKP-RKVLMQAPKNGFFYVIDRATG--ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT  382 (689)
T ss_dssp             CEEEEEEEETTEE-EEEEEECCTTSEEEEEETTTC--CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred             CcEEEeeccCCcE-EEEEEEECCCCeEEEEECCCC--CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence            1111112223100 126888999999999998766  3332111000       0                000     0


Q ss_pred             CCcccccceEEEEEeCCCCEEEEEcC---------------------------------------------CCeEEEEEc
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLATVGS---------------------------------------------EGTFSFWDK  290 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s~~~---------------------------------------------dg~i~iwd~  290 (356)
                      .+.........++++|+..++++...                                             +|.|+.||+
T Consensus       383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~  462 (689)
T 1yiq_A          383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP  462 (689)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred             CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence            00000001234789998877776522                                             478999999


Q ss_pred             CcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCcee
Q psy12911        291 DARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAI  341 (356)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~  341 (356)
                      .+|+.+..++.+. ++....++..+.++++++.|++   +..+|...++.+
T Consensus       463 ~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~---l~a~D~~tG~~l  509 (689)
T 1yiq_A          463 VKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGR---VIAYAADTGEKL  509 (689)
T ss_dssp             TTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSE---EEEEETTTCCEE
T ss_pred             CCCCeEeEccCCC-CccCccceECCCEEEEECCCCc---EEEEECCCCccc
Confidence            9999888776443 3344466778888888876542   334444444444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.13  E-value=1.3e-08  Score=92.48  Aligned_cols=257  Identities=9%  Similarity=0.029  Sum_probs=152.6

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccC--CcceeE-EEEccCCCeEEEEcC------CCeEEEEEcCCCceeeecc
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM--SEPVLD-VAWIDDGTKVFMAGC------DKTVKCWDLASNQSMQVAQ  115 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~--~~~v~~-~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~  115 (356)
                      ..+++++.|+.|..+|..++...-.......  ...+.+ ..+ .++ .++++..      +|.|..+|..+|+.+....
T Consensus       118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            5688888899999999988432221112111  011111 011 134 5555543      5899999999998765221


Q ss_pred             c----C----------------------------CCeeEEEEEeCCCCCeEEEEECCC-------------------eEE
Q psy12911        116 H----D----------------------------APVKTCHWIKAPNYTCLMTGSWDK-------------------TLK  144 (356)
Q Consensus       116 ~----~----------------------------~~v~~~~~~~~~~~~~l~~~~~dg-------------------~i~  144 (356)
                      .    .                            .....+++.  ++..+++.++.++                   .|.
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d--~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~  273 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYD--PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL  273 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEE--TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEc--CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            0    0                            011246777  7777888887766                   499


Q ss_pred             EEeCCCCCceEEEeCC----------CeeE--EEecCCC---eEEEEecCCeEEEEeCCCCccccccccCc---------
Q psy12911        145 FWDLRTPQPIMTINLP----------ERCY--CADVDYP---LAVVGTAGRGIVLYQLEGKPQEFKKTESP---------  200 (356)
Q Consensus       145 iwd~~~~~~~~~~~~~----------~~~~--~~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------  200 (356)
                      .+|.++++.+..++..          ....  .+..++.   .+++++.+|.++++|..+++.........         
T Consensus       274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~  353 (668)
T 1kv9_A          274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL  353 (668)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred             EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence            9999999999888753          1112  2233443   58888999999999998886431111000         


Q ss_pred             -ccc------------------------cceEEEeecCCCCCCCeEEE--------------------------------
Q psy12911        201 -LKY------------------------QNRCIAIFRDKKKQPAGYGL--------------------------------  223 (356)
Q Consensus       201 -~~~------------------------~i~~~~~~~~~~~~~~~~~~--------------------------------  223 (356)
                       ...                        .-..++++|+    ...+.+                                
T Consensus       354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~----~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  429 (668)
T 1kv9_A          354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG----TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (668)
T ss_dssp             TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT----TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccCCccccccccccCCeeEECCCCccccCCCcceECCC----CCEEEEeccccceEeeeeccccccccccccCccccccC
Confidence             000                        0012445554    222222                                


Q ss_pred             ----eecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911        224 ----GSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS  299 (356)
Q Consensus       224 ----~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  299 (356)
                          ...+|.|..||..+.  +.+.......            +.....+...+.+++.++.||.|+.||.++|+.+..+
T Consensus       430 ~~p~~~~~g~l~A~D~~tG--~~~W~~~~~~------------~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          430 DVPAAVVSGALLAWDPVKQ--KAAWKVPYPT------------HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             CCCGGGCEEEEEEEETTTT--EEEEEEEESS------------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCCCCCccceEEEEeCCCC--cEEEEccCCC------------CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence                113477888887655  4555554432            2333344556788999999999999999999998877


Q ss_pred             CCCccce-EEEEECCCCC-EEEEEec
Q psy12911        300 EAMDMSI-STCALNHNGQ-IFAYAVS  323 (356)
Q Consensus       300 ~~~~~~v-~~~~~s~~~~-~l~~~s~  323 (356)
                      +...+.. .-+.+..+|+ +++.+++
T Consensus       496 ~~~~~~~~~p~~~~~~G~~yva~~~G  521 (668)
T 1kv9_A          496 EAQSGIVAAPMTFELAGRQYVAIMAG  521 (668)
T ss_dssp             ECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             cCCCCcccCceEEEECCEEEEEEEec
Confidence            6433211 2234456776 6666665

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.10  E-value=1.9e-08  Score=78.47  Aligned_cols=189  Identities=11%  Similarity=-0.001  Sum_probs=124.0

Q ss_pred             eeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeE--EEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEE
Q psy12911         79 VLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKT--CHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMT  156 (356)
Q Consensus        79 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  156 (356)
                      ...+.|+ ++.+..+.+.+|.|+++|+++++.+... -......  +++.   .+++.+..-.++.+.+||..+.+.+.+
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~---g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD---GERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC---SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe---CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            4688887 4566777788899999999999988744 4444444  4442   234444555688999999999999999


Q ss_pred             EeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911        157 INLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN  236 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  236 (356)
                      +......+.+..++..++++..++.|.++|..+.+.                                            
T Consensus       132 i~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v--------------------------------------------  167 (268)
T 3nok_A          132 TRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFAL--------------------------------------------  167 (268)
T ss_dssp             EECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCE--------------------------------------------
T ss_pred             EeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeE--------------------------------------------
Confidence            987666566666666666666667777777665321                                            


Q ss_pred             CCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC-------------c
Q psy12911        237 PANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM-------------D  303 (356)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~  303 (356)
                            +.++.......      ....++.+.|. +|++.+....+..|.+.|..+++.+..+...             .
T Consensus       168 ------~~~I~V~~~g~------~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~  234 (268)
T 3nok_A          168 ------VGAVQVKLRGQ------PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPE  234 (268)
T ss_dssp             ------EEEEECEETTE------ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTT
T ss_pred             ------EEEEEeCCCCc------ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcC
Confidence                  11111100000      00035667776 6766666666789999999998876654321             2


Q ss_pred             cceEEEEECCCCCEEEEEeccCCcCCC
Q psy12911        304 MSISTCALNHNGQIFAYAVSYDWSKGH  330 (356)
Q Consensus       304 ~~v~~~~~s~~~~~l~~~s~~d~~~~~  330 (356)
                      ...+.|||+|+++.|..++ --|.+.+
T Consensus       235 ~vlNGIA~dp~~~rlfVTG-K~Wp~~~  260 (268)
T 3nok_A          235 AVLNGIAVEPGSGRIFMTG-KLWPRLF  260 (268)
T ss_dssp             CCEEEEEECTTTCCEEEEE-TTCSEEE
T ss_pred             CceEEEEEcCCCCEEEEeC-CCCCceE
Confidence            3568999999887777765 3354433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.09  E-value=7.3e-08  Score=79.80  Aligned_cols=189  Identities=11%  Similarity=-0.070  Sum_probs=114.2

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec--cCCcceeEEEEccCCCeEEEEcC------CCeE
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ--GMSEPVLDVAWIDDGTKVFMAGC------DKTV  100 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~------dg~i  100 (356)
                      ...|.+++++++|   +++++. .+ .|.+||..++.........  .....+.+++++|+|+++++...      .+.|
T Consensus        89 ~~~v~~i~~~~dg---~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l  163 (326)
T 2ghs_A           89 PFMGSALAKISDS---KQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI  163 (326)
T ss_dssp             SSCEEEEEEEETT---EEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred             CCcceEEEEeCCC---eEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence            4579999999998   766654 44 5999998763322211111  11246889999999986665432      2456


Q ss_pred             EEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEE-ECCCeEEEEeCC--CC-CceEEEeCCCeeEEEecCCCeEEEE
Q psy12911        101 KCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTG-SWDKTLKFWDLR--TP-QPIMTINLPERCYCADVDYPLAVVG  176 (356)
Q Consensus       101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~  176 (356)
                      ..++  +++...+.........++|+  ++++.++.+ +.++.|.+||+.  ++ +...     ...             
T Consensus       164 ~~~~--~g~~~~~~~~~~~~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----~~~-------------  221 (326)
T 2ghs_A          164 YHVA--KGKVTKLFADISIPNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-----AEV-------------  221 (326)
T ss_dssp             EEEE--TTEEEEEEEEESSEEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-----CEE-------------
T ss_pred             EEEe--CCcEEEeeCCCcccCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccC-----ceE-------------
Confidence            6666  45554444444567889999  999866555 456889999975  44 2110     000             


Q ss_pred             ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG  256 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (356)
                             +.++.           .....+..+++.++    +.++++...++.|.+|+.+.   +.+..+..+..     
T Consensus       222 -------~~~~~-----------~~~~~p~gi~~d~~----G~lwva~~~~~~v~~~d~~g---~~~~~i~~~~~-----  271 (326)
T 2ghs_A          222 -------FIDST-----------GIKGGMDGSVCDAE----GHIWNARWGEGAVDRYDTDG---NHIARYEVPGK-----  271 (326)
T ss_dssp             -------EEECT-----------TSSSEEEEEEECTT----SCEEEEEETTTEEEEECTTC---CEEEEEECSCS-----
T ss_pred             -------EEECC-----------CCCCCCCeeEECCC----CCEEEEEeCCCEEEEECCCC---CEEEEEECCCC-----
Confidence                   00000           01123356777777    66666555667888887632   33444444333     


Q ss_pred             CcccccceEEEEEe-CCCCEEEEEc
Q psy12911        257 GVQDIYAVNGIVFH-PVHGTLATVG  280 (356)
Q Consensus       257 ~~~~~~~i~~i~~s-p~~~~l~s~~  280 (356)
                            .+.+++|+ |+++.|+.++
T Consensus       272 ------~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          272 ------QTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             ------BEEEEEEESTTSCEEEEEE
T ss_pred             ------CcEEEEEecCCCCEEEEEe
Confidence                  68999998 8887665443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.04  E-value=1.4e-08  Score=84.75  Aligned_cols=228  Identities=10%  Similarity=-0.066  Sum_probs=141.5

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeC-----CCeEEEEeccCCCceeeeeec------cCCcceeEEEEccCCCeE-EEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSW-----DNNVRCWEVEPNGKTIPKSMQ------GMSEPVLDVAWIDDGTKV-FMA   94 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l-~~~   94 (356)
                      +|-..+..+++++++   +++++-..     ++.|.+||+.++.  +...+.      .+...+..+++++++..+ ++-
T Consensus        64 ~~~~~p~gv~~d~~g---~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd  138 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNG---IVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISD  138 (343)
T ss_dssp             CCCSCEEEEEECSSS---EEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEE
T ss_pred             cceeEeeEEEEcCCC---cEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEc
Confidence            466789999999998   76665543     5789999998732  223332      123456899999865555 444


Q ss_pred             c---CCCeEEEEEcCCCceeeec-ccCCCee-EEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecC
Q psy12911         95 G---CDKTVKCWDLASNQSMQVA-QHDAPVK-TCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVD  169 (356)
Q Consensus        95 ~---~dg~i~vwd~~~~~~~~~~-~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (356)
                      .   .++.|.+||+.+++..+.. .|..... ...+.  .++..+.+.+.++.++.|..           ....++++++
T Consensus       139 ~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~--~~g~~~~~~~~~g~~~~~~~-----------~~~gia~s~d  205 (343)
T 2qe8_A          139 PAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV--IDGVPVQIGQPDGTVIRPHL-----------GVNGIVLDAE  205 (343)
T ss_dssp             CCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE--ETTEECBEECTTSCEECCCC-----------CEEEEEECTT
T ss_pred             CccCCCCeEEEEECCCCCEEEEecCCCccccccccee--ECCEEEEeccCCCceeceec-----------ccceeEeccC
Confidence            4   5789999999988876643 2222111 13444  56777777778888776642           2234677788


Q ss_pred             CCeEEEEecCC-eEEEEeCCC---Ccc----cccccc-CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC
Q psy12911        170 YPLAVVGTAGR-GIVLYQLEG---KPQ----EFKKTE-SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP  240 (356)
Q Consensus       170 ~~~~~~~~~d~-~i~i~d~~~---~~~----~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~  240 (356)
                      +..++++...+ .+..++...   ...    ...... .........+++.++    +.++++...++.|.+|+...+  
T Consensus       206 g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~----G~l~va~~~~~~V~~~d~~~G--  279 (343)
T 2qe8_A          206 NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD----HNIYVGDLAHSAIGVITSADR--  279 (343)
T ss_dssp             SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT----CCEEEEEGGGTEEEEEETTTT--
T ss_pred             CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC----CCEEEEccCCCeEEEEECCCC--
Confidence            88777776654 555555321   100    000000 012235677899888    788888888999999998322  


Q ss_pred             CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEE
Q psy12911        241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFW  288 (356)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iw  288 (356)
                      + +..+.....         .....+++|.+++.++++.+..+.+.+|
T Consensus       280 ~-~~~~~~~~~---------~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          280 A-YKLLVTDEK---------LSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             E-EEEEEECGG---------GSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             C-EEEEEECCc---------eecCCeeEECCCCcEEEEeCcccccccc
Confidence            1 222221110         0158899999999888887765544433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.04  E-value=1.3e-08  Score=84.49  Aligned_cols=250  Identities=13%  Similarity=0.049  Sum_probs=147.5

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ  109 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  109 (356)
                      ..+.++...+++    .|..++.+  |..+|. + +... ..+...........+.  +..|..++.++.|..+|.. ++
T Consensus        60 ~~~~~~~~~~~g----~l~v~t~~--l~~~d~-~-g~~~-~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~  127 (330)
T 3hxj_A           60 IIECRPSIGKDG----TIYFGSDK--VYAINP-D-GTEK-WRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GT  127 (330)
T ss_dssp             EEEECCEETTTT----EECCSSCE--EEEECC-C-GGGG-GGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SC
T ss_pred             CcccceEEecCC----cEEEecCc--EEEECC-C-CcEE-EEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CC
Confidence            345666676665    45555544  777775 3 2222 2222222223333333  4568888888999999988 66


Q ss_pred             eee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEEecC-CCeEEEEecCCeEEEEe
Q psy12911        110 SMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCADVD-YPLAVVGTAGRGIVLYQ  186 (356)
Q Consensus       110 ~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~d~~i~i~d  186 (356)
                      ... .......+.++...  +++. +..++.++.|..+|.. ++.+..+..+.. ...+..+ ...+.+++  +.|..+|
T Consensus       128 ~~~~~~~~~~~~~~~~~~--~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d  201 (330)
T 3hxj_A          128 EKWRFKTKKAIYATPIVS--EDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN  201 (330)
T ss_dssp             EEEEEECSSCCCSCCEEC--TTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC
T ss_pred             EEEEEcCCCceeeeeEEc--CCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC
Confidence            544 33344455666665  5665 6667788999999988 887777765432 2222232 33455666  8899999


Q ss_pred             CCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE
Q psy12911        187 LEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG  266 (356)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (356)
                       .++.......  .....+.++...++    + .+.+++.++.+..++.+.   .....+.....           .+..
T Consensus       202 -~~g~~~~~~~--~~~~~~~~~~~~~~----g-~l~v~t~~~gl~~~~~~g---~~~~~~~~~~~-----------~~~~  259 (330)
T 3hxj_A          202 -PDGTEKWNFY--AGYWTVTRPAISED----G-TIYVTSLDGHLYAINPDG---TEKWRFKTGKR-----------IESS  259 (330)
T ss_dssp             -TTSCEEEEEC--CSSCCCSCCEECTT----S-CEEEEETTTEEEEECTTS---CEEEEEECSSC-----------CCSC
T ss_pred             -CCCcEEEEEc--cCCcceeceEECCC----C-eEEEEcCCCeEEEECCCC---CEeEEeeCCCC-----------cccc
Confidence             4443322222  12244666666665    3 567777788888875322   33344332221           2334


Q ss_pred             EEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEE
Q psy12911        267 IVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       267 i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                      +.+.+++ .|..++.+|.|..+|. +++.+..+......+.++...++|++.+.+
T Consensus       260 ~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt  312 (330)
T 3hxj_A          260 PVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGT  312 (330)
T ss_dssp             CEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEEC
T ss_pred             ceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEc
Confidence            5555555 4666777888999996 676665555445567788888888866543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.02  E-value=2.3e-07  Score=71.74  Aligned_cols=204  Identities=14%  Similarity=0.024  Sum_probs=127.0

Q ss_pred             eeeeeccCCc--ceeEEEEccCCCeEEEEcCC--CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeE
Q psy12911         68 IPKSMQGMSE--PVLDVAWIDDGTKVFMAGCD--KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTL  143 (356)
Q Consensus        68 ~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i  143 (356)
                      ++..+ .|..  -...+.|++ +.+..+.+.+  ..|+++|+.+++.+....-..........+ .++++....-.++.+
T Consensus        11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~-~~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA-WRDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE-ETTEEEEEESSSSEE
T ss_pred             EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE-eCCEEEEEEeeCCEE
Confidence            33444 3543  466899986 5555666654  489999999999887544444443333331 223444555568899


Q ss_pred             EEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCccc---ccceEEEeecCCCCCCCe
Q psy12911        144 KFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLK---YQNRCIAIFRDKKKQPAG  220 (356)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~  220 (356)
                      .+||..+.+.+.++......+.+..++..++++..++.|.++|..+.............   ..++.+.+. +    +..
T Consensus        88 ~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~----G~l  162 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-N----GEL  162 (243)
T ss_dssp             EEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T----TEE
T ss_pred             EEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-C----CEE
Confidence            99999999999999988877888888888888888999999999886533222211111   223444544 3    455


Q ss_pred             EEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCC--cccccceEEEEEeCCCCEEEEEcC
Q psy12911        221 YGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG--VQDIYAVNGIVFHPVHGTLATVGS  281 (356)
Q Consensus       221 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~sp~~~~l~s~~~  281 (356)
                      ++....+..|.+.|...+  +.+..+....-......  .......+.||++|+++.|+..+.
T Consensus       163 yanvw~s~~I~vIDp~tG--~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASG--KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEETTTTEEEEECTTTC--BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCeEEEEECCCC--CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            555546777777776555  44544443321111000  111226789999998765555443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.02  E-value=4.8e-07  Score=74.75  Aligned_cols=240  Identities=11%  Similarity=-0.029  Sum_probs=141.6

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec-----------------cCCcceeEEEEcc-CCCeE
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-----------------GMSEPVLDVAWID-DGTKV   91 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-----------------~~~~~v~~~~~s~-~~~~l   91 (356)
                      ..-.++++.+++   ++++++..++.|..|+.............                 .....+..+++.+ ++ .|
T Consensus        19 ~~p~~i~~d~~g---~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l   94 (322)
T 2fp8_A           19 YAPNSFTFDSTN---KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QL   94 (322)
T ss_dssp             SCCCCEECCTTC---SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EE
T ss_pred             CCceEEEEcCCC---CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cE
Confidence            345688899998   87888888999999987652221111000                 0113578899997 55 45


Q ss_pred             EEEcCCCeEEEEEcCCCceeeecc-----cCCCeeEEEEEeCC-CCCeEEEEEC-----------------CCeEEEEeC
Q psy12911         92 FMAGCDKTVKCWDLASNQSMQVAQ-----HDAPVKTCHWIKAP-NYTCLMTGSW-----------------DKTLKFWDL  148 (356)
Q Consensus        92 ~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~~~l~~~~~-----------------dg~i~iwd~  148 (356)
                      +.+...+.|..+|..+++...+..     .......+++.  + +|++.++-..                 ++.|..||.
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d--~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD--QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEEC--TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEe--cCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            555445568888887664433221     12346788888  8 8876666432                 367889998


Q ss_pred             CCCCceEEEe--CCCeeEEEecCCCeEEEE-ecCCeEEEEeCCCCccc-cccccCcccccceEEEeecCCCCCCCeEEEe
Q psy12911        149 RTPQPIMTIN--LPERCYCADVDYPLAVVG-TAGRGIVLYQLEGKPQE-FKKTESPLKYQNRCIAIFRDKKKQPAGYGLG  224 (356)
Q Consensus       149 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  224 (356)
                      .+++......  .....++++.++..++++ ...+.|..|++...... ..... .... ...+++.++    +.++++.
T Consensus       173 ~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~~~g-P~gi~~d~~----G~l~va~  246 (322)
T 2fp8_A          173 STKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIPN-PGNIKRNAD----GHFWVSS  246 (322)
T ss_dssp             TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-ECSS-EEEEEECTT----SCEEEEE
T ss_pred             CCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-eCCC-CCCeEECCC----CCEEEEe
Confidence            7665332222  223456777777766665 55689999998753210 11111 1123 677888887    6655554


Q ss_pred             ec----------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        225 SV----------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       225 ~~----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                      ..          .+.|..++.+   .+.+..+.......       ...+..+++ .+++++++...++.|.++++..
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~~---G~~~~~~~~~~g~~-------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDEF---GNILEVIPLPPPFA-------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECTT---SCEEEEEECCTTTT-------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             cCcccccccCCCccEEEEECCC---CCEEEEEECCCCCc-------cccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            44          3445555443   23344443322100       014666666 4666777767788999999763

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.02  E-value=1.5e-07  Score=83.78  Aligned_cols=256  Identities=12%  Similarity=0.005  Sum_probs=146.0

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCc--ceeE-EEEccCCCeEEEEcC------CCeEEEEEcCCCceeeecc
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE--PVLD-VAWIDDGTKVFMAGC------DKTVKCWDLASNQSMQVAQ  115 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~v~~-~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~  115 (356)
                      ..+++++.|+.|..+|..++...-...+..+..  .+.+ ... .++ .+++++.      ++.|..+|..+++.+....
T Consensus       116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            467788889999999998843322222222111  1211 111 144 5666554      7999999999998764221


Q ss_pred             cCCCe---------------------------------------eEEEEEeCCCCCeEEEEECC----------------
Q psy12911        116 HDAPV---------------------------------------KTCHWIKAPNYTCLMTGSWD----------------  140 (356)
Q Consensus       116 ~~~~v---------------------------------------~~~~~~~~~~~~~l~~~~~d----------------  140 (356)
                      .....                                       ..+++.  ++...++.+..+                
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d--~~~g~vy~~~g~~~~~~~~~~~gd~~y~  271 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYD--PKLNLFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEE--TTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEc--CCCCeEEEECCCCccccCCccCCCceeE
Confidence            11110                                       124555  555566655532                


Q ss_pred             CeEEEEeCCCCCceEEEeCCC----------eeEEEe--cCCC---eEEEEecCCeEEEEeCCCCccccccccCc-c---
Q psy12911        141 KTLKFWDLRTPQPIMTINLPE----------RCYCAD--VDYP---LAVVGTAGRGIVLYQLEGKPQEFKKTESP-L---  201 (356)
Q Consensus       141 g~i~iwd~~~~~~~~~~~~~~----------~~~~~~--~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~---  201 (356)
                      +.|..+|.++++.+..++...          ......  .++.   .++.++.+|.+.++|..+++......... .   
T Consensus       272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            369999999999988887431          112222  2442   46778889999999998876433221110 0   


Q ss_pred             -------cccc--------------------------eEEEeecCCCCCCCeEEEee-----------------------
Q psy12911        202 -------KYQN--------------------------RCIAIFRDKKKQPAGYGLGS-----------------------  225 (356)
Q Consensus       202 -------~~~i--------------------------~~~~~~~~~~~~~~~~~~~~-----------------------  225 (356)
                             ..++                          ..++++|+    ..++++..                       
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~----~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  427 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE----SRTLYAGLNHICMDWEPFMLPYRAGQFFVGA  427 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT----TTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC----CCEEEEEchhccccccccccccccCCccccc
Confidence                   0000                          23455555    34444433                       


Q ss_pred             --------------cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        226 --------------VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       226 --------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                                    .+|.+..+|....  +.+..+....            .+....+...+..++.++.||.|+.||.+
T Consensus       428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG--~~~W~~~~~~------------~~~~~~~~t~gg~v~~g~~dg~l~a~D~~  493 (571)
T 2ad6_A          428 TLAMYPGPNGPTKKEMGQIRAFDLTTG--KAKWTKWEKF------------AAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             EEEEEECTTSTTSCCCEEEEEECTTTC--CEEEEEEESS------------CCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             cceeccCccccCCCCCCeEEEEECCCC--CEEEEecCCC------------CccceeEEECCCEEEEEcCCCeEEEEECC
Confidence                          2356666666544  4455544322            22222223346677789999999999999


Q ss_pred             cceecCCCCCCccc-eEEEEECCCCCEEEEEe
Q psy12911        292 ARTKLKPSEAMDMS-ISTCALNHNGQIFAYAV  322 (356)
Q Consensus       292 ~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~s  322 (356)
                      +|+.+.+++..... -.-+.+..+|+.++...
T Consensus       494 tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          494 DGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             TCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCEEEEEeCCCCcEeeeEEEEECCEEEEEEE
Confidence            99998877633221 12234667887655543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.99  E-value=4.3e-08  Score=85.44  Aligned_cols=238  Identities=11%  Similarity=0.019  Sum_probs=157.1

Q ss_pred             CCCCCceEEEEEeC-CCeEEEEeccCCCceeee--eeccCCcceeEEEE-c-cCCCeEEEEc------------------
Q psy12911         39 PSTLPQYFLIAGSW-DNNVRCWEVEPNGKTIPK--SMQGMSEPVLDVAW-I-DDGTKVFMAG------------------   95 (356)
Q Consensus        39 ~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~--~~~~~~~~v~~~~~-s-~~~~~l~~~~------------------   95 (356)
                      +||   ++|+.... ++.|.+.|+.+.  +...  .+. .......+++ + |+++++++++                  
T Consensus        99 ~DG---~~lfVnd~~~~rVavIdl~t~--~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~  172 (595)
T 1fwx_A           99 YDG---RFLFMNDKANTRVARVRCDVM--KCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN  172 (595)
T ss_dssp             EEE---EEEEEEETTTTEEEEEETTTT--EEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred             cCC---CEEEEEcCCCCEEEEEECCCc--eEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccc
Confidence            377   77777654 567999999983  3333  332 2346788888 5 8999999884                  


Q ss_pred             CCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCC----------------------------------
Q psy12911         96 CDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK----------------------------------  141 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----------------------------------  141 (356)
                      .++.+.+.|..+.+......-.+....++++  ++|+++++.+.+.                                  
T Consensus       173 ~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~s--pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~  250 (595)
T 1fwx_A          173 YVNVFTAVDADKWEVAWQVLVSGNLDNCDAD--YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  250 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEEEESSCCCCEEEC--SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             cCceEEEEECCCCeEEEEEEeCCCccceEEC--CCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence            2568999999998877643333355667788  8999988888553                                  


Q ss_pred             ----eEEEEeCCC--CCc-eEEEeCC--CeeEEEecCCCeEEEEe-cCCeEEEEeCCCCccc---------cccccCccc
Q psy12911        142 ----TLKFWDLRT--PQP-IMTINLP--ERCYCADVDYPLAVVGT-AGRGIVLYQLEGKPQE---------FKKTESPLK  202 (356)
Q Consensus       142 ----~i~iwd~~~--~~~-~~~~~~~--~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~---------~~~~~~~~~  202 (356)
                          .|.+.|.++  ++. +..+..+  ...+.+++++.+++++. .+.+|.++|+.+....         .........
T Consensus       251 ~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG  330 (595)
T 1fwx_A          251 QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  330 (595)
T ss_dssp             EEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred             eEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence                478888887  555 5666543  35677888888766655 5799999999864210         011122345


Q ss_pred             ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC--------CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC
Q psy12911        203 YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA--------NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG  274 (356)
Q Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~  274 (356)
                      .....++|+++    +..+++...+++|.+|+++..        ..+.+..+..|-..      .|...-..+.++|||+
T Consensus       331 ~gP~h~aF~~d----G~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp------Gh~~~~~g~t~~~DGk  400 (595)
T 1fwx_A          331 LGPLHTAFDGR----GNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP------GHLKTVMGETLDATND  400 (595)
T ss_dssp             SCEEEEEECTT----SEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE------EEEEETTTTSTTCCSS
T ss_pred             CCcceEEECCC----CeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc------ccceeccceEeCCCCC
Confidence            66789999999    756667778999999999751        12344455444320      0000112335689999


Q ss_pred             EEEEEcC---CCe----------EEEEEcCcce
Q psy12911        275 TLATVGS---EGT----------FSFWDKDART  294 (356)
Q Consensus       275 ~l~s~~~---dg~----------i~iwd~~~~~  294 (356)
                      +|+++..   |+.          -.++|+..++
T Consensus       401 ~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          401 WLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             EEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            9998853   432          2788885443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.98  E-value=5.4e-07  Score=80.37  Aligned_cols=259  Identities=10%  Similarity=0.018  Sum_probs=147.3

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCc--cee-EEEEcc---CCC-eEEEEc------CCCeEEEEEcCCCcee
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE--PVL-DVAWID---DGT-KVFMAG------CDKTVKCWDLASNQSM  111 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~v~-~~~~s~---~~~-~l~~~~------~dg~i~vwd~~~~~~~  111 (356)
                      ..++.++.|+.|.-+|..++...-...+..+..  .+. ......   +++ .+++++      .++.|..+|..+|+.+
T Consensus       118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~  197 (582)
T 1flg_A          118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI  197 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEE
Confidence            567888889999999998844322222221110  111 111111   233 566654      3789999999999876


Q ss_pred             eecccCC-C-----------------------------------------eeEEEEEeCCCCCeEEEEEC----------
Q psy12911        112 QVAQHDA-P-----------------------------------------VKTCHWIKAPNYTCLMTGSW----------  139 (356)
Q Consensus       112 ~~~~~~~-~-----------------------------------------v~~~~~~~~~~~~~l~~~~~----------  139 (356)
                      ....... .                                         -..+++.  ++..+++.+..          
T Consensus       198 W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d--~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          198 WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFD--AETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEE--TTTTEEEEEECCBSSSCGGGG
T ss_pred             eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEc--CCCCEEEEeCCCCCcccCccc
Confidence            4221110 0                                         0124455  56666766653          


Q ss_pred             ----------C----CeEEEEeCCCCCceEEEeCCC----------eeEEEe---cCCC---eEEEEecCCeEEEEeCCC
Q psy12911        140 ----------D----KTLKFWDLRTPQPIMTINLPE----------RCYCAD---VDYP---LAVVGTAGRGIVLYQLEG  189 (356)
Q Consensus       140 ----------d----g~i~iwd~~~~~~~~~~~~~~----------~~~~~~---~~~~---~~~~~~~d~~i~i~d~~~  189 (356)
                                |    +.|..+|.++++.+..++...          ..+...   .++.   .++.++.+|.++++|.++
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence                      2    589999999999998886421          122223   3453   677889999999999988


Q ss_pred             CccccccccCc-c----------cc-----------------c---------------ceEEEeecCCCCCCCeEEEee-
Q psy12911        190 KPQEFKKTESP-L----------KY-----------------Q---------------NRCIAIFRDKKKQPAGYGLGS-  225 (356)
Q Consensus       190 ~~~~~~~~~~~-~----------~~-----------------~---------------i~~~~~~~~~~~~~~~~~~~~-  225 (356)
                      ++......... .          ..                 .               -..++++|+    ...+++.. 
T Consensus       356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~----~g~~yv~~~  431 (582)
T 1flg_A          356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQD----TGLFYVPAN  431 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTT----TCCEEEEEE
T ss_pred             CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCC----CCEEEEech
Confidence            76432221110 0          00                 0               012333443    22333322 


Q ss_pred             --------------------------------cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC
Q psy12911        226 --------------------------------VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH  273 (356)
Q Consensus       226 --------------------------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~  273 (356)
                                                      .+|.+..||....  +.+.......            ++..-.....+
T Consensus       432 ~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG--~~~W~~~~~~------------~~~~g~~~tag  497 (582)
T 1flg_A          432 HWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG--KVVWEHKEHL------------PLWAGVLATAG  497 (582)
T ss_dssp             CEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC--CEEEEEEESS------------CCCSCCEEETT
T ss_pred             hcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC--CEEEEecCCC------------CCcccceEeCC
Confidence                                            2466666666554  4455544322            12111122246


Q ss_pred             CEEEEEcCCCeEEEEEcCcceecCCCCCCccce-EEEEECCCCC-EEEEEec
Q psy12911        274 GTLATVGSEGTFSFWDKDARTKLKPSEAMDMSI-STCALNHNGQ-IFAYAVS  323 (356)
Q Consensus       274 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~-~l~~~s~  323 (356)
                      .+++.++.||.++.||.++|+.+.+++...+.+ .-+.|..+|+ |+++.++
T Consensus       498 glvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          498 NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence            778889999999999999999998776433221 2256778887 5555555

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.96  E-value=2.1e-07  Score=82.88  Aligned_cols=256  Identities=11%  Similarity=-0.005  Sum_probs=145.3

Q ss_pred             EEEEeCCCeEEEEeccCCCceeeeeeccCC--cceeE-EEEccCCCeEEEEc------CCCeEEEEEcCCCceeeecccC
Q psy12911         47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMS--EPVLD-VAWIDDGTKVFMAG------CDKTVKCWDLASNQSMQVAQHD  117 (356)
Q Consensus        47 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~v~~-~~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~  117 (356)
                      |++++.|+.|.-+|..++...-...+..+.  ..+.+ ..+ .++ .+++++      .++.|+.+|.++|+.+......
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            788888999999999884332222222111  01211 111 144 555554      3799999999999876422111


Q ss_pred             CC--------------------------------------e-eEEEEEeCCCCCeEEEEECC----------------Ce
Q psy12911        118 AP--------------------------------------V-KTCHWIKAPNYTCLMTGSWD----------------KT  142 (356)
Q Consensus       118 ~~--------------------------------------v-~~~~~~~~~~~~~l~~~~~d----------------g~  142 (356)
                      .+                                      + ..+++.  ++..+++.+..+                +.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d--~~~g~vy~g~g~~~p~~~~~r~gd~~y~~s  279 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD--PGTNLIYFGTGNPAPWNETMRPGDNKWTMT  279 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE--TTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEe--CCCCEEEEeCCCCccccCcccCCCccccce
Confidence            11                                      1 123455  666677776654                38


Q ss_pred             EEEEeCCCCCceEEEeCCC----------eeEEEe---cCC---CeEEEEecCCeEEEEeCCCCccccccccCc------
Q psy12911        143 LKFWDLRTPQPIMTINLPE----------RCYCAD---VDY---PLAVVGTAGRGIVLYQLEGKPQEFKKTESP------  200 (356)
Q Consensus       143 i~iwd~~~~~~~~~~~~~~----------~~~~~~---~~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------  200 (356)
                      |..+|.++++.+..++...          ......   .++   ..++.++.+|.+.++|.++++.........      
T Consensus       280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~  359 (599)
T 1w6s_A          280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK  359 (599)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccc
Confidence            9999999999998887532          112233   345   356778899999999998876533221110      


Q ss_pred             -----ccc--------------------------cceEEEeecCCCCCCCeEEEee------------------------
Q psy12911        201 -----LKY--------------------------QNRCIAIFRDKKKQPAGYGLGS------------------------  225 (356)
Q Consensus       201 -----~~~--------------------------~i~~~~~~~~~~~~~~~~~~~~------------------------  225 (356)
                           ...                          .-..++++|+    ..++++..                        
T Consensus       360 ~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~----~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~  435 (599)
T 1w6s_A          360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK----RELFFMGINHICMDWEPFMLPYKAGQFFVGAT  435 (599)
T ss_dssp             EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT----TTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             ccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC----CCEEEEeccccceeeecccccccCCcceeccc
Confidence                 000                          0023344444    22332221                        


Q ss_pred             ---------------cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        226 ---------------VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       226 ---------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                                     ..|.+..||....  +.+...+...            +...-...-.+.+++.++.||.|+.||.
T Consensus       436 ~~~~~~p~~~~~~~~~~G~l~A~D~~tG--~~~W~~~~~~------------~~~~g~~~tagg~vf~gt~dg~l~A~D~  501 (599)
T 1w6s_A          436 LNMYPGPKGDRQNYEGLGQIKAYNAITG--DYKWEKMERF------------AVWGGTMATAGDLVFYGTLDGYLKARDS  501 (599)
T ss_dssp             EEEEECTTSBTTTTBCCEEEEEECTTTC--CEEEEEEESS------------CCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred             ceeccCCcCCcccCCCcCeEEEEECCCC--CEEeEecCCC------------CccCcceEecCCEEEEECCCCeEEEEEC
Confidence                           2355666655544  4444443211            1111112224677888999999999999


Q ss_pred             CcceecCCCCCCcc-ceEEEEECCCCC-EEEEEecc
Q psy12911        291 DARTKLKPSEAMDM-SISTCALNHNGQ-IFAYAVSY  324 (356)
Q Consensus       291 ~~~~~~~~~~~~~~-~v~~~~~s~~~~-~l~~~s~~  324 (356)
                      ++|+.+.+++...+ ...-+.|..+|+ |+++.++.
T Consensus       502 ~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G~  537 (599)
T 1w6s_A          502 DTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGV  537 (599)
T ss_dssp             TTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred             CCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEccC
Confidence            99999887753322 112355667886 56666553

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.96  E-value=4.1e-07  Score=70.39  Aligned_cols=198  Identities=10%  Similarity=-0.008  Sum_probs=127.7

Q ss_pred             eecccCC--CeeEEEEEeCCCCCeEEEEECCC--eEEEEeCCCCCceEEEeCCCee--EEEecCCCeEEE-EecCCeEEE
Q psy12911        112 QVAQHDA--PVKTCHWIKAPNYTCLMTGSWDK--TLKFWDLRTPQPIMTINLPERC--YCADVDYPLAVV-GTAGRGIVL  184 (356)
Q Consensus       112 ~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~d~~i~i  184 (356)
                      ....|..  -...+.|+  . +.++.+.+.+|  .|+.+|+.+++.+..+..+...  ..+...++.++. .-.++.+.+
T Consensus        13 ~~~phd~~~ftqGL~~~--~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           13 KRYPHDTTAFTEGLFYL--R-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV   89 (243)
T ss_dssp             EEEECCTTCCEEEEEEE--T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEcCCCCccccccEEEE--C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence            3345554  45689997  5 56677767654  8999999999999999876643  334555665554 456899999


Q ss_pred             EeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccce
Q psy12911        185 YQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAV  264 (356)
Q Consensus       185 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  264 (356)
                      ||..+.+........   ..  ...+.++    +..++++..++.|.++|....  +.+.++.......      ....+
T Consensus        90 ~D~~tl~~~~ti~~~---~~--Gwglt~d----g~~L~vSdgs~~l~~iDp~t~--~~~~~I~V~~~g~------~~~~l  152 (243)
T 3mbr_X           90 YDLATLTPRARFRYP---GE--GWALTSD----DSHLYMSDGTAVIRKLDPDTL--QQVGSIKVTAGGR------PLDNL  152 (243)
T ss_dssp             EETTTTEEEEEEECS---SC--CCEEEEC----SSCEEEECSSSEEEEECTTTC--CEEEEEECEETTE------ECCCE
T ss_pred             EECCcCcEEEEEeCC---CC--ceEEeeC----CCEEEEECCCCeEEEEeCCCC--eEEEEEEEccCCc------ccccc
Confidence            999887543332221   22  2333455    456666666788877776544  5555554432100      00146


Q ss_pred             EEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC-------------CccceEEEEECCCCCEEEEEeccCCcCCCc
Q psy12911        265 NGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA-------------MDMSISTCALNHNGQIFAYAVSYDWSKGHE  331 (356)
Q Consensus       265 ~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~  331 (356)
                      +.+.+. +|+..+..-.+..|.+.|..+++.+..+..             .....+.+|++|+++.|..++. -|.+.++
T Consensus       153 NeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK-~wp~~~~  230 (243)
T 3mbr_X          153 NELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK-RWPMLYE  230 (243)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET-TCSEEEE
T ss_pred             eeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC-CCCcEEE
Confidence            677776 677776666788999999999987655431             1235689999999888877763 3554433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.95  E-value=1.5e-06  Score=68.57  Aligned_cols=203  Identities=8%  Similarity=-0.073  Sum_probs=128.6

Q ss_pred             ceEEeCCCCC--CeeEEEecCCCCCceEEEEEeC--CCeEEEEeccCCCceeeeeec-cCCcceeEEEEccCCCeEEEEc
Q psy12911         21 DFEVVSPPED--SISCMAFSPSTLPQYFLIAGSW--DNNVRCWEVEPNGKTIPKSMQ-GMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        21 ~~~~~~~h~~--~V~~~~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      .+..+ .|..  ....+.|++++   .+.++.+.  ++.|+++|+.++.  ....+. +.......+++.  ++.|+.+.
T Consensus        11 vv~~~-p~~~~~f~~Gl~~~~dg---~Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l~~~~fgeGi~~~--g~~lyv~t   82 (266)
T 2iwa_A           11 VLNEF-PHDPYAFTQGLVYAEND---TLFESTGLYGRSSVRQVALQTGK--VENIHKMDDSYFGEGLTLL--NEKLYQVV   82 (266)
T ss_dssp             EEEEE-ECCTTCCEEEEEECSTT---EEEEEECSTTTCEEEEEETTTCC--EEEEEECCTTCCEEEEEEE--TTEEEEEE
T ss_pred             EEEEE-ECCCCCCcccEEEeCCC---eEEEECCCCCCCEEEEEECCCCC--EEEEEecCCCcceEEEEEe--CCEEEEEE
Confidence            34444 3443  36899999987   66665543  5799999999843  323332 111122344554  55565554


Q ss_pred             -CCCeEEEEEcCCCceeeecccC-CCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe------eEEEe
Q psy12911         96 -CDKTVKCWDLASNQSMQVAQHD-APVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER------CYCAD  167 (356)
Q Consensus        96 -~dg~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~  167 (356)
                       .++.+.++|..+.+.+...... ..  ...++  +|++.++.+..++.|.++|..+.+.+..+.....      ...+.
T Consensus        83 ~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt--~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele  158 (266)
T 2iwa_A           83 WLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLA--TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE  158 (266)
T ss_dssp             TTCSEEEEEETTTTEEEEEEECCSSS--CCEEE--ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             ecCCEEEEEECCCCcEEEEEECCCCC--eEEEE--ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence             4899999999998887643222 22  23344  6777777777789999999999998888875321      12222


Q ss_pred             cCCCeEEEEe-cCCeEEEEeCCCCccccccccCc-----------ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911        168 VDYPLAVVGT-AGRGIVLYQLEGKPQEFKKTESP-----------LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV  235 (356)
Q Consensus       168 ~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  235 (356)
                      +....+++.. .++.|.+.|..+++.........           .......++++|++   ...++++...+.+.+.++
T Consensus       159 ~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~---~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          159 YINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN---KRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             EETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT---TEEEEEETTCSEEEEEEE
T ss_pred             EECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC---CEEEEECCCCCeEEEEEE
Confidence            2234555554 57899999999886432222111           11345899999994   346666778888888887


Q ss_pred             CCC
Q psy12911        236 NPA  238 (356)
Q Consensus       236 ~~~  238 (356)
                      ...
T Consensus       236 ~~~  238 (266)
T 2iwa_A          236 HLV  238 (266)
T ss_dssp             EEC
T ss_pred             ecc
Confidence            543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.95  E-value=1.2e-06  Score=71.78  Aligned_cols=241  Identities=10%  Similarity=-0.011  Sum_probs=138.7

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      ..+.+.+..+..+ .....++|++++   +++++-..++.|..||... + .. ..+. ....+..+++.++|+++++..
T Consensus        19 ~~~~~~~~~~p~~-~~pegia~~~~g---~lyv~d~~~~~I~~~d~~g-~-~~-~~~~-~~~~p~gia~~~dG~l~vad~   90 (306)
T 2p4o_A           19 LAPAKIITSFPVN-TFLENLASAPDG---TIFVTNHEVGEIVSITPDG-N-QQ-IHAT-VEGKVSGLAFTSNGDLVATGW   90 (306)
T ss_dssp             CCCEEEEEEECTT-CCEEEEEECTTS---CEEEEETTTTEEEEECTTC-C-EE-EEEE-CSSEEEEEEECTTSCEEEEEE
T ss_pred             CCCceEeEeCCCC-CCcceEEECCCC---CEEEEeCCCCeEEEECCCC-c-eE-EEEe-CCCCceeEEEcCCCcEEEEec
Confidence            3444455555433 567899999998   7777766789999998765 2 21 2222 235688999999998655543


Q ss_pred             CC--CeEEEEEcCCCceeeecc--cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc-eEEEe-------C-C--
Q psy12911         96 CD--KTVKCWDLASNQSMQVAQ--HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP-IMTIN-------L-P--  160 (356)
Q Consensus        96 ~d--g~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~-------~-~--  160 (356)
                      ..  ..|..++..+++...+..  .......++..  +++..+++-..++.|..+|..+++. +....       . .  
T Consensus        91 ~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~  168 (306)
T 2p4o_A           91 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF  168 (306)
T ss_dssp             CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             cCCcceEEEEcCCCCeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence            32  257777877777654322  22233455544  5554455444588999999765421 11100       0 0  


Q ss_pred             CeeEEEecCCCeEEEE-ecCCeEEEEeCCC-CccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        161 ERCYCADVDYPLAVVG-TAGRGIVLYQLEG-KPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       161 ~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                      .....++.++..++++ ...+.|..|++.. +........ ........+++.++    +.++++....+.|.+++.+..
T Consensus       169 ~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-~~~~~P~gi~vd~d----G~l~va~~~~~~V~~~~~~G~  243 (306)
T 2p4o_A          169 PAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVE----GNLYGATHIYNSVVRIAPDRS  243 (306)
T ss_dssp             CSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTT----CCEEEECBTTCCEEEECTTCC
T ss_pred             CcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-eccCCCCCeEECCC----CCEEEEeCCCCeEEEECCCCC
Confidence            1122236666666555 4568999999875 211100000 00134577888888    667666667788888875421


Q ss_pred             CCCCcceeeeecCCCCCCCcccccceEEEEEe---CCCCEEEEEcCCC
Q psy12911        239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFH---PVHGTLATVGSEG  283 (356)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s---p~~~~l~s~~~dg  283 (356)
                       ...+..+...-.           ..++++|.   |+++.|+.++..+
T Consensus       244 -~~~~~~~~~~~~-----------~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          244 -TTIIAQAEQGVI-----------GSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             -EEEEECGGGTCT-----------TEEEEEECCSTTTTTEEEEEECTT
T ss_pred             -EEEEeecccccC-----------CceEEEEecccCCCCEEEEECCCC
Confidence             100111111111           57899998   8877666655443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.94  E-value=1.1e-05  Score=75.31  Aligned_cols=267  Identities=10%  Similarity=0.050  Sum_probs=166.0

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeecc-------CCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQG-------MSEPVLDVAWIDDGTKVFMAGCDKTVK  101 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~  101 (356)
                      ...|.++...+++   . |..|+.++-|.+||..+.  ........       ....|.++...++|.+.+ |+.+ -|.
T Consensus       214 ~~~i~~i~~d~~g---~-lwigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~  285 (795)
T 4a2l_A          214 TKQIQAILQQSPT---R-IWVATEGAGLFLINPKTK--EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLN  285 (795)
T ss_dssp             CCCEEEEEEEETT---E-EEEEEBSSCEEEEETTTT--EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEE
T ss_pred             CCeeEEEEEcCCC---C-EEEEECCCCeEEEeCCCC--eEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhh
Confidence            4678888888887   5 455554445888987662  22111111       235799999988886444 4445 588


Q ss_pred             EEEcCCCceeeecc--------cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC--------CCeeEE
Q psy12911        102 CWDLASNQSMQVAQ--------HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL--------PERCYC  165 (356)
Q Consensus       102 vwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~  165 (356)
                      +||..+++...+..        ....|.++...  .+|. |..|+.++-|..|+..+.... .+..        ...+.+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D--~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~  361 (795)
T 4a2l_A          286 IYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD--SQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSC  361 (795)
T ss_dssp             EEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC--TTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEE
T ss_pred             eEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe--CCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEE
Confidence            99988776554321        23568888886  7765 566777778999987655432 2221        223555


Q ss_pred             EecCC-CeEEEEecCCeEEEEeCCCCcccccccc------CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        166 ADVDY-PLAVVGTAGRGIVLYQLEGKPQEFKKTE------SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       166 ~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                      +..+. ..+.+|+.++.|..|+..++........      ......|.++...++    +..+.+|+.++.+.+++....
T Consensus       362 i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~----g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          362 IVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK----KSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             EEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT----TTEEEEEETTTEEEEEETTTC
T ss_pred             EEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC----CCEEEEEeCcCceeEEeCCCC
Confidence            55554 3677888888899999876542211111      012356778877766    554778888788888887654


Q ss_pred             CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC------CCccceEEEEEC
Q psy12911        239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE------AMDMSISTCALN  312 (356)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s  312 (356)
                      .   ...+..... .     .....|.++...++|.+.+... + -|.+||..+++......      .....|.++...
T Consensus       438 ~---~~~~~~~~~-~-----l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d  506 (795)
T 4a2l_A          438 Q---VENFNQRNS-Q-----LVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD  506 (795)
T ss_dssp             C---EEEECTTTS-C-----CSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred             c---EEEeecCCC-C-----cCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence            2   111111000 0     0011689999988888766654 4 48889988765432211      123578999999


Q ss_pred             CCCCEEEEEe
Q psy12911        313 HNGQIFAYAV  322 (356)
Q Consensus       313 ~~~~~l~~~s  322 (356)
                      ++|++.+.+.
T Consensus       507 ~~g~lWigt~  516 (795)
T 4a2l_A          507 SHKRLWIGGE  516 (795)
T ss_dssp             TTCCEEEEES
T ss_pred             CCCCEEEEeC
Confidence            9998777654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.92  E-value=1e-05  Score=75.50  Aligned_cols=268  Identities=10%  Similarity=0.039  Sum_probs=163.8

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec----cCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ----GMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD  104 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  104 (356)
                      ...|.++...++|    .|..|+.++-|..|+.............    -....|.++...++|+ |..|+.++-|..|+
T Consensus       309 ~~~i~~i~~D~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~  383 (795)
T 4a2l_A          309 QRSVRSIFMDSQG----GMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYN  383 (795)
T ss_dssp             SSCEEEEEECTTS----CEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEEC
T ss_pred             CCcEEEEEEeCCc----CEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEc
Confidence            3579999998887    4677777778999987652211111110    1245699999888875 55677777799999


Q ss_pred             cCCCceeeecc---------cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC------CCeeEEEecC
Q psy12911        105 LASNQSMQVAQ---------HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL------PERCYCADVD  169 (356)
Q Consensus       105 ~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~  169 (356)
                      ..+++...+..         ....|.++...  +++.+|..|+.++-|..||..+++.. .+..      ...+.++..+
T Consensus       384 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d--~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d  460 (795)
T 4a2l_A          384 PITQRFTSYTLQEDESARGIGSNNIKAVYVD--EKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPD  460 (795)
T ss_dssp             TTTCCEEEECCC------CCSCSCEEEEEEE--TTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEEC
T ss_pred             CCCCcEEEEecCCCCcccCCCCccEEEEEEc--CCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEEC
Confidence            88876654321         13568888887  78775777787778999998876543 3322      2245555544


Q ss_pred             C-CeEEEEecCCeEEEEeCCCCcccccccc----CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911        170 Y-PLAVVGTAGRGIVLYQLEGKPQEFKKTE----SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF  244 (356)
Q Consensus       170 ~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  244 (356)
                      . ..+.+|+. +.+.+||..++........    ......+.++...++    +. +.+|+. +.+..|+......    
T Consensus       461 ~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~----g~-lWigt~-~Gl~~~~~~~~~~----  529 (795)
T 4a2l_A          461 GEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSH----KR-LWIGGE-EGLSVFKQEGLDI----  529 (795)
T ss_dssp             SSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTT----CC-EEEEES-SCEEEEEEETTEE----
T ss_pred             CCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCC----CC-EEEEeC-CceEEEeCCCCeE----
Confidence            3 35666666 5688899876542211111    112345777777666    44 555555 5577887754321    


Q ss_pred             eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC--CCCCC-ccceEEEEECCCCCEEEEE
Q psy12911        245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK--PSEAM-DMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~-~~~v~~~~~s~~~~~l~~~  321 (356)
                      .+.....   ..+ -....|.++...++|.+.++.. . -|..||..+++...  ...+. ...|.++...++|++.+++
T Consensus       530 ~~~~~~~---~~~-l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          530 QKASILP---VSN-VTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             EECCCSC---SCG-GGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred             EEecCCC---CCC-CCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence            1110000   000 0112689999999998766554 3 47889987654322  11111 3468889999999877766

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.85  E-value=5.6e-07  Score=81.88  Aligned_cols=269  Identities=13%  Similarity=0.050  Sum_probs=153.2

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCc----------ce-eEEEEccCCCeEEEEcCCCeEEEEEcCCCceeee
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE----------PV-LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV  113 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~----------~v-~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  113 (356)
                      ..|++++.++.|.-+|..++. .+ -.+.....          .+ ..+++  .+..|+.++.|+.|..+|..+|+.+..
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~-~~-W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGK-EL-WRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCC-EE-EEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCh-hc-eEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence            467778888999999998743 32 22211110          00 11222  345788888899999999999998752


Q ss_pred             cccC-----CCeeE-EEEEeCCCCCeEEEEEC------CCeEEEEeCCCCCceEEEeCCC--------------------
Q psy12911        114 AQHD-----APVKT-CHWIKAPNYTCLMTGSW------DKTLKFWDLRTPQPIMTINLPE--------------------  161 (356)
Q Consensus       114 ~~~~-----~~v~~-~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~--------------------  161 (356)
                      ....     ..+.+ ..+   .++ .++.+..      +|.|+.+|.++++.+..+....                    
T Consensus       143 ~~~~~~~~~~~~~~~P~v---~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~  218 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRV---VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ  218 (668)
T ss_dssp             EECSCTTSSCBCCSCCEE---ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred             eccCCCCCcceecCCCEE---ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence            2211     11111 111   233 4555443      5899999999999998886310                    


Q ss_pred             --------------eeEEEecCCCeEEEEecCC-------------------eEEEEeCCCCccccccccCccc------
Q psy12911        162 --------------RCYCADVDYPLAVVGTAGR-------------------GIVLYQLEGKPQEFKKTESPLK------  202 (356)
Q Consensus       162 --------------~~~~~~~~~~~~~~~~~d~-------------------~i~i~d~~~~~~~~~~~~~~~~------  202 (356)
                                    ....++.....+++++.++                   .|..+|.++++.........+.      
T Consensus       219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~  298 (668)
T 1kv9_A          219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA  298 (668)
T ss_dssp             SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred             ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccC
Confidence                          0134555667888887766                   4999999988765544332222      


Q ss_pred             -ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC---------CCC-------C-C--------
Q psy12911        203 -YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS---------NGG-------A-G--------  256 (356)
Q Consensus       203 -~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~---------~~~-------~-~--------  256 (356)
                       .+.....+..+++. ...++.++.+|.++++|...+  +.+...+....         ...       . .        
T Consensus       299 ~~~~~~~d~~~~G~~-~~~v~~~~~~G~l~~lD~~tG--~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p  375 (668)
T 1kv9_A          299 TQQITLAELNIDGKP-RKVLMQAPKNGFFYVLDRTNG--KLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP  375 (668)
T ss_dssp             CSCEEEEEEEETTEE-EEEEEECCTTSEEEEEETTTC--CEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred             CCCcEEEEeccCCcE-EEEEEEECCCCEEEEEECCCC--CEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence             11122222223110 126888999999999988766  33322111100         000       0 0        


Q ss_pred             CcccccceEEEEEeCCCCEEEEE------------------------------------cCCCeEEEEEcCcceecCCCC
Q psy12911        257 GVQDIYAVNGIVFHPVHGTLATV------------------------------------GSEGTFSFWDKDARTKLKPSE  300 (356)
Q Consensus       257 ~~~~~~~i~~i~~sp~~~~l~s~------------------------------------~~dg~i~iwd~~~~~~~~~~~  300 (356)
                      +......-..++++|+..+++..                                    ..+|.|..||+.+++.+.+..
T Consensus       376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~  455 (668)
T 1kv9_A          376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP  455 (668)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE
T ss_pred             CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc
Confidence            00000011236788876665531                                    134889999999999877665


Q ss_pred             CCccceEEEEECCCCCEEEEEeccC
Q psy12911        301 AMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       301 ~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      .+ .+.....+...+.++++++.++
T Consensus       456 ~~-~~~~~~~~~t~gg~vf~g~~dg  479 (668)
T 1kv9_A          456 YP-THWNGGTLSTAGNLVFQGTAAG  479 (668)
T ss_dssp             ES-SSCCCCEEEETTTEEEEECTTS
T ss_pred             CC-CCCcCceeEeCCCEEEEECCcc
Confidence            32 2333344556778888886443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.85  E-value=3.7e-06  Score=65.68  Aligned_cols=190  Identities=12%  Similarity=0.028  Sum_probs=118.7

Q ss_pred             ceEEeCCCCC--CeeEEEecCCCCCceEEEEEeCCC--eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-
Q psy12911         21 DFEVVSPPED--SISCMAFSPSTLPQYFLIAGSWDN--NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-   95 (356)
Q Consensus        21 ~~~~~~~h~~--~V~~~~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-   95 (356)
                      .++.+ .|..  -...+.|+ ++   .+..+.+.+|  .|+++|+.++.  ....+.. ..........++++.|+... 
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~---~LyestG~~g~S~v~~vD~~Tgk--v~~~~~l-~~~~FgeGit~~g~~ly~ltw  104 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NG---YFYESTGLNGRSSIRKVDIESGK--TLQQIEL-GKRYFGEGISDWKDKIVGLTW  104 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TT---EEEEEEEETTEEEEEEECTTTCC--EEEEEEC-CTTCCEEEEEEETTEEEEEES
T ss_pred             EEEEe-cCCCCcccceEEEE-CC---EEEEECCCCCCceEEEEECCCCc--EEEEEec-CCccceeEEEEeCCEEEEEEe
Confidence            33444 4544  34889998 66   7777777766  89999999843  2233332 23343433334455666554 


Q ss_pred             CCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--ee----EEEecC
Q psy12911         96 CDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--RC----YCADVD  169 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~----~~~~~~  169 (356)
                      .++.+.+||..+.+.+........=..++    +++..|+.+..++.|.++|..+.+.+.++....  ..    -.+.+.
T Consensus       105 ~~~~v~v~D~~t~~~~~ti~~~~eG~glt----~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          105 KNGLGFVWNIRNLRQVRSFNYDGEGWGLT----HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             SSSEEEEEETTTCCEEEEEECSSCCCCEE----ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred             eCCEEEEEECccCcEEEEEECCCCceEEe----cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence            48999999999999887444333334444    456667666668889999999999988887532  11    112333


Q ss_pred             CCeEEEEe-cCCeEEEEeCCCCccccccccC----------cccccceEEEeecCCCCCCCeEEEeec
Q psy12911        170 YPLAVVGT-AGRGIVLYQLEGKPQEFKKTES----------PLKYQNRCIAIFRDKKKQPAGYGLGSV  226 (356)
Q Consensus       170 ~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~  226 (356)
                      ...+.+.. .++.|.+.|.++++........          ......+.|++.|+    ...|++.+.
T Consensus       181 ~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~----~~~lfVTGK  244 (262)
T 3nol_A          181 DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE----HHRLFVTGK  244 (262)
T ss_dssp             TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT----TTEEEEEET
T ss_pred             CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC----CCEEEEECC
Confidence            44555554 5789999999887643222211          11234588999998    455555543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.83  E-value=2e-06  Score=79.44  Aligned_cols=197  Identities=13%  Similarity=0.028  Sum_probs=113.9

Q ss_pred             CCCC-CeeEEEec-CCCCCceEEEEEeC-CC----eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC--
Q psy12911         27 PPED-SISCMAFS-PSTLPQYFLIAGSW-DN----NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD--   97 (356)
Q Consensus        27 ~h~~-~V~~~~~~-~~~~~~~~l~~~~~-dg----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--   97 (356)
                      +|.- .+...+|| |||   ++||.+.. +|    .|+++|+.++...+...+.   .....++|+|||+.|+....+  
T Consensus       170 ~~~~~~~~~~~~S~PDG---~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~  243 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEH---DLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDET  243 (751)
T ss_dssp             TCSCCEEEEEEECTTTT---CEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTT
T ss_pred             CCCeEEEeeeEecCCCC---CEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCC
Confidence            3443 67889999 999   87775543 22    5999999884022211221   224578999999988877664  


Q ss_pred             ---CeEEEEEcCCCcee--ee-c-ccCCCeeEEEEEeCCCCCeEEEEEC---CCeEEEEeCCCCC-ce--EEEeCC--Ce
Q psy12911         98 ---KTVKCWDLASNQSM--QV-A-QHDAPVKTCHWIKAPNYTCLMTGSW---DKTLKFWDLRTPQ-PI--MTINLP--ER  162 (356)
Q Consensus        98 ---g~i~vwd~~~~~~~--~~-~-~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~~~~--~~  162 (356)
                         ..|+++++.+++..  .+ . ........+.|+  +||++|+....   ...|+++|+.++. ..  ..+...  ..
T Consensus       244 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  321 (751)
T 2xe4_A          244 LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA--ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV  321 (751)
T ss_dssp             CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC--TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred             CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC--CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence               36888898876532  22 1 233446678899  99998887653   3468899998763 22  333222  22


Q ss_pred             eEEEe-cCCCeEEEEecC-----CeEEEEeCCCCccccc-cccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911        163 CYCAD-VDYPLAVVGTAG-----RGIVLYQLEGKPQEFK-KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV  235 (356)
Q Consensus       163 ~~~~~-~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  235 (356)
                      .+... ..+..++..+..     ..|..+++.+...... .+.......+..+.+..     ..++++...++..++|-+
T Consensus       322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~-----~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS-----NYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECS-----SEEEEEEEETTEEEEEEE
T ss_pred             eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEEC-----CEEEEEEEeCCEEEEEEE
Confidence            33343 336655554432     3677777764211111 11111122334444432     356677777887666655


Q ss_pred             C
Q psy12911        236 N  236 (356)
Q Consensus       236 ~  236 (356)
                      +
T Consensus       397 d  397 (751)
T 2xe4_A          397 M  397 (751)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.83  E-value=1.2e-06  Score=78.07  Aligned_cols=183  Identities=11%  Similarity=0.030  Sum_probs=106.9

Q ss_pred             eEEEEEeC-CCeEEEEec-cCCCceeeee-eccCCc--------c-eeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee
Q psy12911         45 YFLIAGSW-DNNVRCWEV-EPNGKTIPKS-MQGMSE--------P-VLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ  112 (356)
Q Consensus        45 ~~l~~~~~-dg~i~vw~~-~~~~~~~~~~-~~~~~~--------~-v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  112 (356)
                      ..+++++. ++.|.-+|. .++ +.+-+. +.....        . -..++.  .+..++.++.|+.|..+|..+|+.+.
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           63 DMMYVHSAFPNNTYALNLNDPG-KIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCCc-cEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            45666676 889999998 773 333221 111100        0 011222  35578888889999999999998875


Q ss_pred             ecccCC-----CeeE-EEEEeCCCCCeEEEEEC------CCeEEEEeCCCCCceEEEeCCCee-----------------
Q psy12911        113 VAQHDA-----PVKT-CHWIKAPNYTCLMTGSW------DKTLKFWDLRTPQPIMTINLPERC-----------------  163 (356)
Q Consensus       113 ~~~~~~-----~v~~-~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~-----------------  163 (356)
                      ......     .+.+ ...   .++ .++.++.      ++.|..+|.++++.+.++......                 
T Consensus       140 ~~~~~~~~~~~~~~~~P~v---~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G  215 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFV---AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG  215 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEE---ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EecCCCCCccceeccCCEE---ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence            322111     2221 111   234 4555544      789999999999998887753211                 


Q ss_pred             ------------------------EEEecCCCeEEEEecC----------------CeEEEEeCCCCccccccccCccc-
Q psy12911        164 ------------------------YCADVDYPLAVVGTAG----------------RGIVLYQLEGKPQEFKKTESPLK-  202 (356)
Q Consensus       164 ------------------------~~~~~~~~~~~~~~~d----------------~~i~i~d~~~~~~~~~~~~~~~~-  202 (356)
                                              ..++.....++++..+                +.|..+|.++++.........+. 
T Consensus       216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~  295 (571)
T 2ad6_A          216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE  295 (571)
T ss_dssp             CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcc
Confidence                                    2344444566666532                36999999988765444332221 


Q ss_pred             ------ccceEEEeecCCCCCC---CeEEEeecCCeEEEEEeCCC
Q psy12911        203 ------YQNRCIAIFRDKKKQP---AGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       203 ------~~i~~~~~~~~~~~~~---~~~~~~~~dg~i~i~~~~~~  238 (356)
                            ....-+....+    +   ..++.++.+|.++++|...+
T Consensus       296 ~d~~~~~~p~l~~~~~~----G~~~~~v~~~~~~G~l~~lD~~tG  336 (571)
T 2ad6_A          296 WDFAGVNQMVLTDQPVN----GKMTPLLSHIDRNGILYTLNRENG  336 (571)
T ss_dssp             SCCCCCCCCEEEEEEET----TEEEEEEEEECTTSEEEEEETTTC
T ss_pred             cccccCCCCEEEecccC----CcEEEEEEEeCCCcEEEEEECCCC
Confidence                  11111222224    4   35677888999988887665

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.82  E-value=1.7e-06  Score=67.51  Aligned_cols=172  Identities=9%  Similarity=-0.003  Sum_probs=110.6

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCCC
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLASN  108 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~  108 (356)
                      .-...+.|+. +   .+..+.+.+|.|+++|++++. .. ..+  -..........++++.|+.. -.++.+.+||..+.
T Consensus        55 ~ftqGL~~~~-~---~Ly~stG~~g~v~~iD~~Tgk-v~-~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl  126 (268)
T 3nok_A           55 AFTQGLVFHQ-G---HFFESTGHQGTLRQLSLESAQ-PV-WME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP  126 (268)
T ss_dssp             CCEEEEEEET-T---EEEEEETTTTEEEECCSSCSS-CS-EEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTT
T ss_pred             cccceEEEEC-C---EEEEEcCCCCEEEEEECCCCc-EE-eEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcC
Confidence            3457888874 4   788888889999999999843 22 333  12233332223344445444 45899999999999


Q ss_pred             ceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe------eEEEecCCCeEEEEe-cCCe
Q psy12911        109 QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER------CYCADVDYPLAVVGT-AGRG  181 (356)
Q Consensus       109 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~d~~  181 (356)
                      +.+........-..++    ++++.|+.+..++.|.++|..+.+.+.++.....      ...+.+....+++.. .++.
T Consensus       127 ~~~~ti~~~~eGwGLt----~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~  202 (268)
T 3nok_A          127 QRERTTRYSGEGWGLC----YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSD  202 (268)
T ss_dssp             EEEEEEECSSCCCCEE----EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSE
T ss_pred             cEEEEEeCCCceeEEe----cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCe
Confidence            9887444344435555    4466677666789999999999999888875331      122233344555554 5789


Q ss_pred             EEEEeCCCCccccccccC-----------cccccceEEEeecC
Q psy12911        182 IVLYQLEGKPQEFKKTES-----------PLKYQNRCIAIFRD  213 (356)
Q Consensus       182 i~i~d~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~  213 (356)
                      |.+.|.++++........           ....-.+.|++.|+
T Consensus       203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~  245 (268)
T 3nok_A          203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG  245 (268)
T ss_dssp             EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred             EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence            999999887643222111           11234588999998

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.82  E-value=7.6e-07  Score=73.65  Aligned_cols=214  Identities=11%  Similarity=0.040  Sum_probs=133.3

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEE
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTC  123 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~  123 (356)
                      ..|..++.++.|..+|.. + ... .........+.++...+++. |+.++.++.|..+|.. ++... .......+.++
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g-~~~-~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~  182 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-G-TEK-WRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA  182 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-S-CEE-EEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred             CEEEEEecCCEEEEEcCC-C-CEE-EEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence            467788888999999987 2 222 33333455567777777775 6667778999999998 66554 33344556777


Q ss_pred             EEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCCC-eEEEEecCCeEEEEeCCCCccccccccCcc
Q psy12911        124 HWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYP-LAVVGTAGRGIVLYQLEGKPQEFKKTESPL  201 (356)
Q Consensus       124 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  201 (356)
                      ...  .++.+++ ++  +.|..+| .+++.+..+.... .+.++..+.+ .+.+++.++.+..+|...... ... . ..
T Consensus       183 ~~d--~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~-~~~-~-~~  253 (330)
T 3hxj_A          183 SIG--KDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEK-WRF-K-TG  253 (330)
T ss_dssp             EEC--TTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEE-EEE-E-CS
T ss_pred             EEc--CCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCCCEe-EEe-e-CC
Confidence            765  6776554 44  7899999 7777776666443 2333333433 778888888899887543322 111 1 11


Q ss_pred             cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC
Q psy12911        202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS  281 (356)
Q Consensus       202 ~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~  281 (356)
                      ...+..+.+.++     ..+.+++.+|.+..++.+   .+....+.....           .+.++...++|. |..++.
T Consensus       254 ~~~~~~~~~~~~-----g~l~v~t~~ggl~~~d~~---g~~~~~~~~~~~-----------~~~~~~~d~~g~-l~~gt~  313 (330)
T 3hxj_A          254 KRIESSPVIGNT-----DTIYFGSYDGHLYAINPD---GTEKWNFETGSW-----------IIATPVIDENGT-IYFGTR  313 (330)
T ss_dssp             SCCCSCCEECTT-----SCEEEECTTCEEEEECTT---SCEEEEEECSSC-----------CCSCCEECTTCC-EEEECT
T ss_pred             CCccccceEcCC-----CeEEEecCCCCEEEECCC---CcEEEEEEcCCc-----------cccceEEcCCCE-EEEEcC
Confidence            122233444333     467788888888888742   233444332222           466777777776 455788


Q ss_pred             CCeEEEEEcCc
Q psy12911        282 EGTFSFWDKDA  292 (356)
Q Consensus       282 dg~i~iwd~~~  292 (356)
                      +|.+++...+.
T Consensus       314 ~G~~~~~~~~~  324 (330)
T 3hxj_A          314 NGKFYALFNLE  324 (330)
T ss_dssp             TSCEEEEEC--
T ss_pred             CCeEEEEeccc
Confidence            99999887654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.81  E-value=2e-06  Score=76.72  Aligned_cols=185  Identities=12%  Similarity=0.052  Sum_probs=111.7

Q ss_pred             eEEEEEeC-CCeEEEEec-cCCCceeeee-eccCC---------cceeEEEEccCCCe----EEEEcCCCeEEEEEcCCC
Q psy12911         45 YFLIAGSW-DNNVRCWEV-EPNGKTIPKS-MQGMS---------EPVLDVAWIDDGTK----VFMAGCDKTVKCWDLASN  108 (356)
Q Consensus        45 ~~l~~~~~-dg~i~vw~~-~~~~~~~~~~-~~~~~---------~~v~~~~~s~~~~~----l~~~~~dg~i~vwd~~~~  108 (356)
                      ..|++++. ++.|.-+|. .++ +.+-+. .....         .....++++|.+..    |+.++.|+.|..+|..+|
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG-~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPG-TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCC-cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            46667776 888999998 773 333221 11100         01123455444445    888888999999999999


Q ss_pred             ceeeecccCC-----CeeE-EEEEeCCCCCeEEEEE------CCCeEEEEeCCCCCceEEEeCCCe--------------
Q psy12911        109 QSMQVAQHDA-----PVKT-CHWIKAPNYTCLMTGS------WDKTLKFWDLRTPQPIMTINLPER--------------  162 (356)
Q Consensus       109 ~~~~~~~~~~-----~v~~-~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~--------------  162 (356)
                      +.+.......     .+.+ ..+   .++ .++.++      .+|.|+.+|.++++.+..+.....              
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v---~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~  217 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYV---VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN  217 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEE---ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred             CEEEeecCCCCCccceeecCCEE---ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence            9875322111     2221 112   234 455554      379999999999999888775432              


Q ss_pred             ---------------------------eEEEecCCCeEEEEecC----------------CeEEEEeCCCCccccccccC
Q psy12911        163 ---------------------------CYCADVDYPLAVVGTAG----------------RGIVLYQLEGKPQEFKKTES  199 (356)
Q Consensus       163 ---------------------------~~~~~~~~~~~~~~~~d----------------~~i~i~d~~~~~~~~~~~~~  199 (356)
                                                 ...++.....++++..+                +.|..+|.++++........
T Consensus       218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~  297 (599)
T 1w6s_A          218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT  297 (599)
T ss_dssp             GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred             ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence                                       12344556677777665                38999999988765544433


Q ss_pred             cccc-------cceEEEee-cCCCCCC---CeEEEeecCCeEEEEEeCCC
Q psy12911        200 PLKY-------QNRCIAIF-RDKKKQP---AGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       200 ~~~~-------~i~~~~~~-~~~~~~~---~~~~~~~~dg~i~i~~~~~~  238 (356)
                      .+..       ...-+... .+    +   ..++.++.+|.++++|...+
T Consensus       298 ~~d~wd~d~~~~p~l~d~~~~~----G~~~~~v~~~~~~G~l~~lD~~tG  343 (599)
T 1w6s_A          298 PHDEWDYAGVNVMMLSEQKDKD----GKARKLLTHPDRNGIVYTLDRTDG  343 (599)
T ss_dssp             TTCSSCCCCCCCCEEEEEECTT----SCEEEEEEEECTTSEEEEEETTTC
T ss_pred             CCccccccCCCccEEEeccccC----CcEEEEEEEECCCcEEEEEECCCC
Confidence            3211       11111111 23    3   45777889999999888665

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.78  E-value=3.1e-05  Score=61.92  Aligned_cols=218  Identities=9%  Similarity=-0.037  Sum_probs=128.6

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCCC
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLASN  108 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~  108 (356)
                      ..+..++|++++  +.++++-..++.|.+++....  .....+.........+++.+++..|+.+ ...+.|.++++...
T Consensus        36 ~~~~gi~~d~~~--~~ly~~d~~~~~I~~~~~~g~--~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVD--KVVYWTDISEPSIGRASLHGG--EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTT--TEEEEEETTTTEEEEEESSSC--CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCC--CEEEEEECCCCEEEEEecCCC--CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence            356799999975  145555556789999998762  2222222223467899999976655554 45789999998765


Q ss_pred             ceeeecc-cCCCeeEEEEEeCCCCCeEEEEEC---CCeEEEEeCCCCCceEEEe-C---CCeeEEEecCCCeEEEEe-cC
Q psy12911        109 QSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSW---DKTLKFWDLRTPQPIMTIN-L---PERCYCADVDYPLAVVGT-AG  179 (356)
Q Consensus       109 ~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~-~d  179 (356)
                      ....+.. .......++++  +++..|+.+..   .+.|..+++... ....+. .   ....++++..+..++++. ..
T Consensus       112 ~~~~~~~~~~~~P~~i~vd--~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          112 QRRVLFDTGLVNPRGIVTD--PVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             SCEEEECSSCSSEEEEEEE--TTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CEEEEEECCCCCccEEEEe--eCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCC
Confidence            4333222 22467899999  86555555543   368888887543 333332 1   124566777666665554 46


Q ss_pred             CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcc
Q psy12911        180 RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQ  259 (356)
Q Consensus       180 ~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (356)
                      +.|..+|+.+....... .  .......++.. .    +..+++....+.|.+++.+..  +.+..+......       
T Consensus       189 ~~I~~~~~~g~~~~~~~-~--~~~~P~gi~~d-~----~~lyva~~~~~~v~~~d~~~g--~~~~~i~~g~~~-------  251 (267)
T 1npe_A          189 HRAECLNPAQPGRRKVL-E--GLQYPFAVTSY-G----KNLYYTDWKTNSVIAMDLAIS--KEMDTFHPHKQT-------  251 (267)
T ss_dssp             TEEEEEETTEEEEEEEE-E--CCCSEEEEEEE-T----TEEEEEETTTTEEEEEETTTT--EEEEEECCSSCC-------
T ss_pred             CEEEEEecCCCceEEEe-c--CCCCceEEEEe-C----CEEEEEECCCCeEEEEeCCCC--CceEEEcccccc-------
Confidence            89999999764321111 1  11223455543 2    345555556688888887654  334444322110       


Q ss_pred             cccceEEEEEeCCCC
Q psy12911        260 DIYAVNGIVFHPVHG  274 (356)
Q Consensus       260 ~~~~i~~i~~sp~~~  274 (356)
                         ....+++.|++.
T Consensus       252 ---~p~gi~~~~~~~  263 (267)
T 1npe_A          252 ---RLYGITIALSQC  263 (267)
T ss_dssp             ---CCCCEEEECSCC
T ss_pred             ---ccceeeecCccC
Confidence               255677887764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.75  E-value=3.9e-06  Score=69.25  Aligned_cols=220  Identities=7%  Similarity=-0.063  Sum_probs=130.3

Q ss_pred             cceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecc--------------------cCCCeeEEEEEeCC-CCCeEE
Q psy12911         77 EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ--------------------HDAPVKTCHWIKAP-NYTCLM  135 (356)
Q Consensus        77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------~~~~v~~~~~~~~~-~~~~l~  135 (356)
                      ....+++|.+++++++++..++.|..|+..+++...+..                    ....+..+++.  + +++ |+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~--~~~g~-l~   95 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYN--LQNNQ-LY   95 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEE--TTTTE-EE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEc--CCCCc-EE
Confidence            345678899999878888889999999988765543211                    11357889988  7 554 55


Q ss_pred             EEECCCeEEEEeCCCCCceEEEeC--C------CeeEEEec-CCCeEEEEec-----------------CCeEEEEeCCC
Q psy12911        136 TGSWDKTLKFWDLRTPQPIMTINL--P------ERCYCADV-DYPLAVVGTA-----------------GRGIVLYQLEG  189 (356)
Q Consensus       136 ~~~~dg~i~iwd~~~~~~~~~~~~--~------~~~~~~~~-~~~~~~~~~~-----------------d~~i~i~d~~~  189 (356)
                      .+...+.|..+|..+++. ..+..  .      ...+.++. ++...++-..                 ++.|..||..+
T Consensus        96 v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            555556688898765532 22211  1      12345555 5544443221                 36788888765


Q ss_pred             CccccccccCcccccceEEEeecCCCCCCCeEEEe-ecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEE
Q psy12911        190 KPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG-SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIV  268 (356)
Q Consensus       190 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  268 (356)
                      +......   ........++++++    +..+.++ ...+.|.+|+++.........+.. ..           ....++
T Consensus       175 ~~~~~~~---~~~~~p~gia~~~d----g~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~-----------gP~gi~  235 (322)
T 2fp8_A          175 KETTLLL---KELHVPGGAEVSAD----SSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-----------NPGNIK  235 (322)
T ss_dssp             TEEEEEE---EEESCCCEEEECTT----SSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CS-----------SEEEEE
T ss_pred             CEEEEec---cCCccCcceEECCC----CCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CC-----------CCCCeE
Confidence            5322111   11134567899998    6655544 567899999987532111111211 10           156789


Q ss_pred             EeCCCCEEEEEcC----------CCeEEEEEcCcceecCCCCCC----ccceEEEEECCCCCEEEEE
Q psy12911        269 FHPVHGTLATVGS----------EGTFSFWDKDARTKLKPSEAM----DMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       269 ~sp~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~  321 (356)
                      +.++|++.++...          .+.|..+|.. ++.+..+...    ...++.+++ .+++++++.
T Consensus       236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~  300 (322)
T 2fp8_A          236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGT  300 (322)
T ss_dssp             ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEEC
T ss_pred             ECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEee
Confidence            9999987776644          4678888874 6655544322    234666766 455544443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.72  E-value=0.00011  Score=68.50  Aligned_cols=270  Identities=11%  Similarity=0.013  Sum_probs=159.9

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeee------------eccCCcceeEEEEccCCCeEEEEcC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKS------------MQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~------------~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      ...|.++...++|    .|..|+..+-|.+++..+........            ..-....|.++...++|. |..|+.
T Consensus       257 ~~~i~~i~~d~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~  331 (781)
T 3v9f_A          257 SSYIFSIKQLKDN----KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTW  331 (781)
T ss_dssp             CCCEEEEEECTTS----EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEB
T ss_pred             CceEEEEEECCCC----CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEec
Confidence            4578999888886    56667765568888876632111111            011345799999988875 666666


Q ss_pred             CCeEEEEEcCCCceeeecc----------cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE---e-CCCe
Q psy12911         97 DKTVKCWDLASNQSMQVAQ----------HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI---N-LPER  162 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~-~~~~  162 (356)
                      ++-|..++..++....+..          ....|.++...  .++. |..|+.++-|..||..+++...-.   . ....
T Consensus       332 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d--~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~  408 (781)
T 3v9f_A          332 GGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDD--GQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNS  408 (781)
T ss_dssp             SSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEEC--TTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSB
T ss_pred             CCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEc--CCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcc
Confidence            6778899887665443211          23468888776  6665 556676667899997654321110   1 1234


Q ss_pred             eEEEecC-CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911        163 CYCADVD-YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK  241 (356)
Q Consensus       163 ~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~  241 (356)
                      +.++..+ ...+.+|+.++.+..+|..++..............|.++...++    + .+.+|+. +.+..++...... 
T Consensus       409 v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~----g-~lwigt~-~Gl~~~~~~~~~~-  481 (781)
T 3v9f_A          409 VLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKN----K-KIWIGTH-AGVFVIDLASKKV-  481 (781)
T ss_dssp             EEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTT----S-EEEEEET-TEEEEEESSSSSC-
T ss_pred             eEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCC----C-CEEEEEC-CceEEEeCCCCeE-
Confidence            5555554 34677788878899999876542211111122356777776665    3 4666666 5677887765421 


Q ss_pred             CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC--CC-CccceEEEEECCCCCEE
Q psy12911        242 DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS--EA-MDMSISTCALNHNGQIF  318 (356)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~-~~~~v~~~~~s~~~~~l  318 (356)
                        ..+.......     .....|.++...++|.+.+....+| |..||..+++.....  .+ ....|.++...++|++.
T Consensus       482 --~~~~~~~~~~-----~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW  553 (781)
T 3v9f_A          482 --IHHYDTSNSQ-----LLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMW  553 (781)
T ss_dssp             --CEEECTTTSS-----CSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEE
T ss_pred             --EecccCcccc-----cccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEE
Confidence              1111111000     0012689999999888766554455 777888765432211  11 24578999999999877


Q ss_pred             EEE
Q psy12911        319 AYA  321 (356)
Q Consensus       319 ~~~  321 (356)
                      +.+
T Consensus       554 i~T  556 (781)
T 3v9f_A          554 LAT  556 (781)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.71  E-value=3.7e-05  Score=65.01  Aligned_cols=239  Identities=9%  Similarity=-0.049  Sum_probs=141.8

Q ss_pred             eeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCCCce
Q psy12911         32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLASNQS  110 (356)
Q Consensus        32 V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~  110 (356)
                      -.|.+..+.    .+|+.+. ...|+..++...  ....... ....+..++|.+.+..|+.+ ...+.|..+++..+..
T Consensus        79 ~~C~~~~~~----~~l~~~~-~~~I~~i~~~~~--~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~  150 (386)
T 3v65_B           79 RSCKALGPE----PVLLFAN-RIDIRQVLPHRS--EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV  150 (386)
T ss_dssp             SCEEECSSC----CEEEEEC-BSCEEEECTTSC--CCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred             CeECCcccc----ceeEeec-CccceeeccCCC--cEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence            445555554    3444444 356888887653  2222222 33457899999866555544 4578999999987765


Q ss_pred             eeec-ccCCCeeEEEEEeCCC-CCeEEEEECCCeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEec-C-CeEE
Q psy12911        111 MQVA-QHDAPVKTCHWIKAPN-YTCLMTGSWDKTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGTA-G-RGIV  183 (356)
Q Consensus       111 ~~~~-~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-d-~~i~  183 (356)
                      ..+. ........+++.  +. +.++++-...+.|.+.++........+...   ...+++++.+..++.+.. . +.|.
T Consensus       151 ~~~~~~~~~~p~glavd--~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~  228 (386)
T 3v65_B          151 EEVVSTGLESPGGLAVD--WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE  228 (386)
T ss_dssp             EEEECSSCSCCCCEEEE--TTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             EEEEeCCCCCccEEEEE--eCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEE
Confidence            4432 223355778887  64 444555555678999987654433333322   245666766666665543 3 6888


Q ss_pred             EEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee-ecCCCCCCCccccc
Q psy12911        184 LYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC-HRSNGGAGGVQDIY  262 (356)
Q Consensus       184 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  262 (356)
                      .+++..........  ..-.....++++|+.   +.++++-...+.|..++++...   ...+.. ...           
T Consensus       229 r~~~dG~~~~~~~~--~~~~~PnGlavd~~~---~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~-----------  289 (386)
T 3v65_B          229 ASSMDGSGRRIIAD--THLFWPNGLTIDYAG---RRMYWVDAKHHVIERANLDGSH---RKAVISQGLP-----------  289 (386)
T ss_dssp             EEETTSCSCEEEEC--SSCSCEEEEEEEGGG---TEEEEEETTTTEEEEECTTSCS---CEEEECSSCS-----------
T ss_pred             EEeCCCCCcEEEEE--CCCCCeeeEEEeCCC---CEEEEEECCCCEEEEEeCCCCe---eEEEEECCCC-----------
Confidence            88887653222111  112346889999872   4455555567778888876432   122211 111           


Q ss_pred             ceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC
Q psy12911        263 AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE  300 (356)
Q Consensus       263 ~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  300 (356)
                      ....+++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus       290 ~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          290 HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            4567777 345666777778899999976776555444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.71  E-value=8.8e-07  Score=80.63  Aligned_cols=233  Identities=10%  Similarity=0.033  Sum_probs=127.4

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeC-CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-CC-----CeE
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSW-DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CD-----KTV  100 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-----g~i  100 (356)
                      +.....++++..++   .+++.|+. +..+.+||..++.......+... ..-.+++..++++.++.|+ .+     ..+
T Consensus       241 ~~~~~~~~~~~~~g---~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~  316 (656)
T 1k3i_A          241 HDMFCPGISMDGNG---QIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNG  316 (656)
T ss_dssp             CCCSSCEEEECTTS---CEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCE
T ss_pred             CCCccccccCCCCC---CEEEeCCCCCCceEEecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccc
Confidence            33344457778888   88999884 45899999887443332222211 1223456667899999888 34     579


Q ss_pred             EEEEcCCCceeeecc-----cCCCeeEEEEEeCCCCCeEEEEECC---------CeEEEEeCCCCCceEEEeCC------
Q psy12911        101 KCWDLASNQSMQVAQ-----HDAPVKTCHWIKAPNYTCLMTGSWD---------KTLKFWDLRTPQPIMTINLP------  160 (356)
Q Consensus       101 ~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~------  160 (356)
                      .+||..+++...+..     ....-....+.  .++..++.++.+         ..+..||..+..........      
T Consensus       317 e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~--~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~  394 (656)
T 1k3i_A          317 EVYSPSSKTWTSLPNAKVNPMLTADKQGLYR--SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV  394 (656)
T ss_dssp             EEEETTTTEEEEETTSCSGGGCCCCTTGGGT--TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEE
T ss_pred             eEeCCCCCcceeCCCccccccccccccceee--cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccccc
Confidence            999998876543310     00000001111  344455555444         45788998877644322211      


Q ss_pred             ------CeeEEEe-cCCCeEEEEecCC-----------eEEEEeCCCCcccccc-ccCcccccceEEEeecCCCCCCCeE
Q psy12911        161 ------ERCYCAD-VDYPLAVVGTAGR-----------GIVLYQLEGKPQEFKK-TESPLKYQNRCIAIFRDKKKQPAGY  221 (356)
Q Consensus       161 ------~~~~~~~-~~~~~~~~~~~d~-----------~i~i~d~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~  221 (356)
                            ...+.+. ..+..++.|+.++           .|.+||..+..-.... ...+....-.+....|+    +..+
T Consensus       395 ~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~----g~i~  470 (656)
T 1k3i_A          395 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPD----GSTF  470 (656)
T ss_dssp             CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTT----SCEE
T ss_pred             CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCC----CCEE
Confidence                  1122222 2445666666432           6778887765422111 01112222344556677    7788


Q ss_pred             EEeecC-----------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC
Q psy12911        222 GLGSVE-----------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS  281 (356)
Q Consensus       222 ~~~~~d-----------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~  281 (356)
                      ++|+.+           ..+.+||........+..+...+.           ......+.|+|++++.|+.
T Consensus       471 v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~-----------~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          471 ITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRV-----------YHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCC-----------TTEEEEECTTSCEEEEECC
T ss_pred             EECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccc-----------cccHhhcCCCcEEEecCCC
Confidence            888764           457888876543222221111111           2334556799999999985

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.69  E-value=9e-05  Score=61.72  Aligned_cols=241  Identities=10%  Similarity=-0.042  Sum_probs=144.4

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLAS  107 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~  107 (356)
                      .+..+|.+..++.    +|+.+. ...|+..++...  .....+. ....+..++|.+.+..|+.+ ...+.|..+++..
T Consensus        33 ~d~~~C~~~~~~~----~ll~~~-~~~I~~i~~~g~--~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g  104 (349)
T 3v64_C           33 PDRRSCKALGPEP----VLLFAN-RIDIRQVLPHRS--EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNG  104 (349)
T ss_dssp             TTSSCEEESSSCC----EEEEEC-BSCEEEECTTSC--CEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCCcccccccCc----eeEeec-ccceEEEeCCCC--eeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCC
Confidence            3455677777754    444444 345777777652  2222232 33457899999866666554 4578999999987


Q ss_pred             Cceeeec-ccCCCeeEEEEEeCCC-CCeEEEEECCCeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEec-C-C
Q psy12911        108 NQSMQVA-QHDAPVKTCHWIKAPN-YTCLMTGSWDKTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGTA-G-R  180 (356)
Q Consensus       108 ~~~~~~~-~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-d-~  180 (356)
                      +....+. ........+++.  +. +.++++-...+.|.+.++........+...   ...+++++.+..++.... . +
T Consensus       105 ~~~~~~~~~~~~~p~glavd--~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~  182 (349)
T 3v64_C          105 SNVEEVVSTGLESPGGLAVD--WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP  182 (349)
T ss_dssp             CSCEEEECSSCSCCCEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred             CCceEEEeCCCCCccEEEEe--cCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCC
Confidence            7654432 223456788887  64 445555556788999998654433333221   245667766666555543 4 7


Q ss_pred             eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee-eecCCCCCCCcc
Q psy12911        181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK-CHRSNGGAGGVQ  259 (356)
Q Consensus       181 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~  259 (356)
                      .|..+++........  ....-.....+++.++.   +.++++-...+.|..++++...   ...+. ....        
T Consensus       183 ~I~r~~~dG~~~~~~--~~~~~~~PnGla~d~~~---~~lY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~--------  246 (349)
T 3v64_C          183 RIEASSMDGSGRRII--ADTHLFWPNGLTIDYAG---RRMYWVDAKHHVIERANLDGSH---RKAVISQGLP--------  246 (349)
T ss_dssp             EEEEEETTSCSCEES--CCSSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCS---CEEEECSSCS--------
T ss_pred             EEEEEeCCCCCcEEE--EECCCCCcceEEEeCCC---CEEEEEECCCCEEEEEeCCCCc---eEEEEeCCCC--------
Confidence            898888876432211  11122356889999872   4455555567788888887532   12221 1111        


Q ss_pred             cccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911        260 DIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS  299 (356)
Q Consensus       260 ~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  299 (356)
                         ....+++ ..+.++++-...+.|..++..+|+.+..+
T Consensus       247 ---~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          247 ---HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             ---SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             ---CceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence               4567777 35566667777888999986666554444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.68  E-value=6.6e-05  Score=69.91  Aligned_cols=266  Identities=12%  Similarity=0.129  Sum_probs=155.0

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee-----ccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM-----QGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD  104 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  104 (356)
                      ..|.++...+++   . |..|+.+ -|.+||..+.........     ......|.++...++|. |..|+..+-|.++|
T Consensus       211 ~~i~~i~~d~~g---~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~  284 (781)
T 3v9f_A          211 NDVRCIYKDTNG---N-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILD  284 (781)
T ss_dssp             SSEEEEEECTTC---C-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEE
T ss_pred             CceeEEEEcCCC---C-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEEC
Confidence            568888888886   4 4445555 688899765221111100     01245699999888775 55566545688899


Q ss_pred             cCCCceeeecc---------------cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe----------C
Q psy12911        105 LASNQSMQVAQ---------------HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN----------L  159 (356)
Q Consensus       105 ~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~  159 (356)
                      ..+++......               ....|.++...  .+|. |..|+.++-|..++..+........          .
T Consensus       285 ~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D--~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~  361 (781)
T 3v9f_A          285 LQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQD--SFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLS  361 (781)
T ss_dssp             TTCC---------CEEECBCSSTTSBSSSCEEEEEEC--SSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCS
T ss_pred             CCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEe--CCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCC
Confidence            88765433211               23568888876  6664 6667777779999977654322211          1


Q ss_pred             CCeeEEEecCC-CeEEEEecCCeEEEEeCCCCccccccc-cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        160 PERCYCADVDY-PLAVVGTAGRGIVLYQLEGKPQEFKKT-ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       160 ~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                      ...+.++..+. ..+.+|+.++.|..||..++....... .......|.++...++    + .+.+|+.++.+..++...
T Consensus       362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~----g-~lWigt~~~Gl~~~~~~~  436 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSE----G-NLWFGTYLGNISYYNTRL  436 (781)
T ss_dssp             SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTT----S-CEEEEETTEEEEEECSSS
T ss_pred             CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCC----C-CEEEEeccCCEEEEcCCC
Confidence            12355555554 467788878889999987543211110 0112355777776655    3 466677766777776543


Q ss_pred             CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC-----CCccceEEEEEC
Q psy12911        238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE-----AMDMSISTCALN  312 (356)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s  312 (356)
                      ..   ...+.. ...       ....|.++...++|.+.+.. . +-|..||..+++......     .....|.++...
T Consensus       437 ~~---~~~~~~-~~~-------~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d  503 (781)
T 3v9f_A          437 KK---FQIIEL-EKN-------ELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD  503 (781)
T ss_dssp             CE---EEECCS-TTT-------CCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC
T ss_pred             Cc---EEEecc-CCC-------CCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEc
Confidence            31   111110 000       01168999998888766554 3 458899987654322111     114578999999


Q ss_pred             CCCCEEEEEe
Q psy12911        313 HNGQIFAYAV  322 (356)
Q Consensus       313 ~~~~~l~~~s  322 (356)
                      ++|++.+.+.
T Consensus       504 ~~g~lWigt~  513 (781)
T 3v9f_A          504 SEGRFWIGTF  513 (781)
T ss_dssp             TTCCEEEEES
T ss_pred             CCCCEEEEEc
Confidence            9999877664

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.63  E-value=0.00012  Score=60.12  Aligned_cols=231  Identities=10%  Similarity=-0.078  Sum_probs=134.8

Q ss_pred             EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCC----Cceeeec-ccCCC
Q psy12911         46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLAS----NQSMQVA-QHDAP  119 (356)
Q Consensus        46 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~----~~~~~~~-~~~~~  119 (356)
                      +|+.+.. ..|+..++....  ....+. ....+..++|.++++.|+.+ ...+.|..+++.+    .....+. ..-..
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~--~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~   78 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA   78 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCC--CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred             EEEEECC-CeEEEEECCCcc--eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence            4444443 468899987732  222232 34567899999876655554 4568999999876    2222222 22245


Q ss_pred             eeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEEecC--CeEEEEeCCCCccc
Q psy12911        120 VKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVGTAG--RGIVLYQLEGKPQE  193 (356)
Q Consensus       120 v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d--~~i~i~d~~~~~~~  193 (356)
                      ...+++.  +.+ .++++-...+.|.+.|+........+..   ....+++++.+..++.+...  +.|..+++......
T Consensus        79 p~glavd--~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~  156 (316)
T 1ijq_A           79 PDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (316)
T ss_dssp             CCEEEEE--TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             cCEEEEe--ecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE
Confidence            6788887  644 4445555678999999865433333331   12355666666666655543  68888888764322


Q ss_pred             cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC
Q psy12911        194 FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH  273 (356)
Q Consensus       194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~  273 (356)
                      ... . ..-.....+++.++.   +.++++-...+.|..++++...   ...+......     .   .....+++. .+
T Consensus       157 ~~~-~-~~~~~P~gla~d~~~---~~lY~~D~~~~~I~~~d~dg~~---~~~~~~~~~~-----~---~~P~giav~-~~  219 (316)
T 1ijq_A          157 SLV-T-ENIQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNGGN---RKTILEDEKR-----L---AHPFSLAVF-ED  219 (316)
T ss_dssp             EEE-C-SSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCS---CEEEEECTTT-----T---SSEEEEEEE-TT
T ss_pred             EEE-E-CCCCCceEEEEeccC---CEEEEEECCCCeEEEEecCCCc---eEEEeecCCc-----c---CCcEEEEEE-CC
Confidence            111 1 122456889999872   3444555567789999987532   2222211100     0   035677775 45


Q ss_pred             CEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911        274 GTLATVGSEGTFSFWDKDARTKLKPS  299 (356)
Q Consensus       274 ~~l~s~~~dg~i~iwd~~~~~~~~~~  299 (356)
                      .++++-...+.|..++..+++.+..+
T Consensus       220 ~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          220 KVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEEECCCCeEEEEeCCCCcceEEE
Confidence            66667777889999998777654444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.61  E-value=0.00012  Score=62.22  Aligned_cols=242  Identities=11%  Similarity=-0.081  Sum_probs=143.0

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCCC----ceee-ecccCC
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLASN----QSMQ-VAQHDA  118 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~----~~~~-~~~~~~  118 (356)
                      .+|+.+. ...|+..++......   .+......+..++|.+.+..|+.+ ...+.|+.+++...    .... ......
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~---~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~  159 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYT---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ  159 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCE---EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred             ceeEEec-cceeEEEccCCccee---EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence            3555554 468999998763222   222345678899999866666555 45788999998762    2222 222445


Q ss_pred             CeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEec--CCeEEEEeCCCCcc
Q psy12911        119 PVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGTA--GRGIVLYQLEGKPQ  192 (356)
Q Consensus       119 ~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~  192 (356)
                      ....+++.  + .+.++++-...+.|.+.++........+...   ...+++++....++....  .+.|...++.....
T Consensus       160 ~p~glavD--~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~  237 (400)
T 3p5b_L          160 APDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  237 (400)
T ss_dssp             CEEEEEEE--TTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred             CcccEEEE--ecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence            67888888  6 4555555556788999998755443333322   245667766666666553  37888888876533


Q ss_pred             ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee-cCCCCCCCcccccceEEEEEeC
Q psy12911        193 EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH-RSNGGAGGVQDIYAVNGIVFHP  271 (356)
Q Consensus       193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~sp  271 (356)
                      .....  ..-.....+++.++.   +.++++-...+.|..++++...   ...+... ....         ....+++. 
T Consensus       238 ~~~~~--~~l~~P~glavd~~~---~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~l~---------~P~gl~v~-  299 (400)
T 3p5b_L          238 YSLVT--ENIQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLA---------HPFSLAVF-  299 (400)
T ss_dssp             EEEEC--SSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCC---CEEEEECSSTTS---------SEEEEEEE-
T ss_pred             EEEEE--CCCCceEEEEEEeCC---CEEEEEECCCCEEEEEeCCCCc---cEEEEeCCCCCC---------CCEEEEEe-
Confidence            22111  112456889999872   3344444567788888887542   2222211 1100         34567763 


Q ss_pred             CCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEE
Q psy12911        272 VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCA  310 (356)
Q Consensus       272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  310 (356)
                      .+.++.+-...+.|..+|..+|+.+..+........+++
T Consensus       300 ~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          300 EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred             CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence            345666666778899999877766655543333344443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.56  E-value=4.8e-05  Score=59.70  Aligned_cols=210  Identities=10%  Similarity=0.112  Sum_probs=129.6

Q ss_pred             eeeccCCcceeEEEEccCCCeEEE-EcCCCeEEEEEcCCCceeeec--ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEE
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFM-AGCDKTVKCWDLASNQSMQVA--QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW  146 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw  146 (356)
                      +.+.+-...+..++|+|+++.|++ ...++.|...|.. ++.++..  ........|++.  +++.++++.-.++.+.++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~--~~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI--GDNQFVISDERDYAIYVI   96 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC--STTEEEEEETTTTEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe--CCCEEEEEECCCCcEEEE
Confidence            345566678999999998776655 5668889999998 7666532  333567888888  888776766567889999


Q ss_pred             eCCCCCc---eEEEeCC----C-----eeEEEecCCCeEEEEecCCeEEEEeCCCC--ccccccc------cCcccccce
Q psy12911        147 DLRTPQP---IMTINLP----E-----RCYCADVDYPLAVVGTAGRGIVLYQLEGK--PQEFKKT------ESPLKYQNR  206 (356)
Q Consensus       147 d~~~~~~---~~~~~~~----~-----~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~~~~~------~~~~~~~i~  206 (356)
                      ++.....   +.....+    .     ..+++++.++.++++.......+|.+...  .......      .........
T Consensus        97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S  176 (255)
T 3qqz_A           97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS  176 (255)
T ss_dssp             EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred             EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence            8876543   2333221    1     46777888877777777655555555421  0011111      011224568


Q ss_pred             EEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEE
Q psy12911        207 CIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFS  286 (356)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~  286 (356)
                      .+++.|..   +.+++....+..+.++|....   .+..+.-..+....  ......-..|+|.++|++.++ ++-+.++
T Consensus       177 ~l~~dp~t---g~lliLS~~s~~L~~~d~~g~---~~~~~~L~~g~~~l--~~~~~qpEGia~d~~G~lyIv-sE~n~~y  247 (255)
T 3qqz_A          177 GAEFNQQK---NTLLVLSHESRALQEVTLVGE---VIGEMSLTKGSRGL--SHNIKQAEGVAMDASGNIYIV-SEPNRFY  247 (255)
T ss_dssp             EEEEETTT---TEEEEEETTTTEEEEECTTCC---EEEEEECSTTGGGC--SSCCCSEEEEEECTTCCEEEE-ETTTEEE
T ss_pred             eEEEcCCC---CeEEEEECCCCeEEEEcCCCC---EEEEEEcCCccCCc--ccccCCCCeeEECCCCCEEEE-cCCceEE
Confidence            99999974   667777778888888876643   22222222110000  000114678999999986655 5667777


Q ss_pred             EEEcC
Q psy12911        287 FWDKD  291 (356)
Q Consensus       287 iwd~~  291 (356)
                      ++.-.
T Consensus       248 ~f~~~  252 (255)
T 3qqz_A          248 RFTPQ  252 (255)
T ss_dssp             EEEC-
T ss_pred             EEEec
Confidence            76543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.55  E-value=3.3e-05  Score=71.39  Aligned_cols=110  Identities=14%  Similarity=0.090  Sum_probs=72.8

Q ss_pred             ceeEEEEc-cCCCeEEEEcC-C----CeEEEEEcCCC-ceeeecccCCCeeEEEEEeCCCCCeEEEEECC-----CeEEE
Q psy12911         78 PVLDVAWI-DDGTKVFMAGC-D----KTVKCWDLASN-QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD-----KTLKF  145 (356)
Q Consensus        78 ~v~~~~~s-~~~~~l~~~~~-d----g~i~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~i  145 (356)
                      .+...+|| |||++||.+.. +    .+|+++|+.++ +.+.. ........+.|+  ||++.|+....+     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~Ws--pDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWG--PDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEEC--SSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEe--cCCCEEEEEEECCCCCCCEEEE
Confidence            67889999 99998885543 2    35999999998 64321 011124578899  999888877665     36888


Q ss_pred             EeCCCCCc--eEEEeCC--C--eeEEEecCCCeEEEEe---cCCeEEEEeCCCC
Q psy12911        146 WDLRTPQP--IMTINLP--E--RCYCADVDYPLAVVGT---AGRGIVLYQLEGK  190 (356)
Q Consensus       146 wd~~~~~~--~~~~~~~--~--~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~  190 (356)
                      +++.+++.  ...+...  .  ....+++++..|+...   ....|.++|+.++
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            99887642  2333322  2  2235677777776654   3457888898875

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.54  E-value=0.00014  Score=62.51  Aligned_cols=236  Identities=8%  Similarity=-0.020  Sum_probs=132.1

Q ss_pred             ceeEEEEccC--CCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC---C-eEEEEeCCCC
Q psy12911         78 PVLDVAWIDD--GTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD---K-TLKFWDLRTP  151 (356)
Q Consensus        78 ~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g-~i~iwd~~~~  151 (356)
                      ....++|.|+  +..|+.+...+.|+.+|..+++...+.........++++  ++++++++....   . .+...+...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd--~dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFT--LNGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEEC--TTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEEC--CCCCEEEEcCCCCcccceEEEEECCCC
Confidence            4568999984  445666655589999999888877766556678999999  999844443311   1 2333443222


Q ss_pred             Cc-eEEEe--CCCeeEEEecCCCeEE-EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCC-eEEEeec
Q psy12911        152 QP-IMTIN--LPERCYCADVDYPLAV-VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPA-GYGLGSV  226 (356)
Q Consensus       152 ~~-~~~~~--~~~~~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~  226 (356)
                      .. ...+.  .....+++++....++ +-..++.|+.+|..++.................++++|+    +. ++++-..
T Consensus       218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd----G~~LYvad~~  293 (433)
T 4hw6_A          218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT----GDWAYIIYNG  293 (433)
T ss_dssp             TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT----SSEEEEEETT
T ss_pred             eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC----CCEEEEEeCC
Confidence            11 11121  1123455666334444 444678899999875543111111111122346999999    66 4555556


Q ss_pred             CCeEEEEEeCCCCCC--CcceeeeecCCCC-CCC---cccccceEEEEE---------eCCCCEEEEEcCCCeEEEEEcC
Q psy12911        227 EGRVAIQYVNPANPK--DNFTFKCHRSNGG-AGG---VQDIYAVNGIVF---------HPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       227 dg~i~i~~~~~~~~~--~~~~~~~~~~~~~-~~~---~~~~~~i~~i~~---------sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      .+.|+.++++.....  ....+.+...... ..+   .........+++         .++|.++++-...+.|+.++. 
T Consensus       294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-  372 (433)
T 4hw6_A          294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-  372 (433)
T ss_dssp             TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-
T ss_pred             CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-
Confidence            788999888643221  1223333211000 000   001124667999         777888888788889999985 


Q ss_pred             cceecCCC-------CC----------CccceEEEEEC-CCCCEEEE
Q psy12911        292 ARTKLKPS-------EA----------MDMSISTCALN-HNGQIFAY  320 (356)
Q Consensus       292 ~~~~~~~~-------~~----------~~~~v~~~~~s-~~~~~l~~  320 (356)
                      +|......       .+          .-.....|+++ ++|.++++
T Consensus       373 ~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa  419 (433)
T 4hw6_A          373 EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG  419 (433)
T ss_dssp             TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence            45332111       00          11236789999 55554444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.50  E-value=0.00015  Score=62.16  Aligned_cols=244  Identities=11%  Similarity=-0.032  Sum_probs=135.5

Q ss_pred             CeeEEEecCC--CCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC-----eEEEE
Q psy12911         31 SISCMAFSPS--TLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK-----TVKCW  103 (356)
Q Consensus        31 ~V~~~~~~~~--~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~vw  103 (356)
                      .-..++|+|+  +   ..|+.+...+.|+.++..++  .. ..+.........++|+++|+ |+.+...+     .+...
T Consensus       140 ~P~gvavd~~s~~---g~Lyv~D~~~~I~~id~~~g--~v-~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~  212 (433)
T 4hw6_A          140 NIWRMMFDPNSNY---DDLYWVGQRDAFRHVDFVNQ--YV-DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF  212 (433)
T ss_dssp             CCCEEEECTTTTT---CEEEEECBTSCEEEEETTTT--EE-EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred             CCceEEEccccCC---CEEEEEeCCCCEEEEECCCC--EE-EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence            4568999984  3   34555544488999998662  22 23333445688999999999 55444321     23333


Q ss_pred             EcCCCcee-eecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEE-eCCC----eeEEEecCCCeEEEE
Q psy12911        104 DLASNQSM-QVAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTI-NLPE----RCYCADVDYPLAVVG  176 (356)
Q Consensus       104 d~~~~~~~-~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~  176 (356)
                      +...+... .....-.....+++.  + ++.++++-..++.|+.+|..++.....+ ....    ..++++++++.|+++
T Consensus       213 ~~~~~~~~~~~~~~~~~P~giavd--~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          213 TRASGFTERLSLCNARGAKTCAVH--PQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             CGGGTTCCEEEEEECSSBCCCEEC--TTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred             ECCCCeeccccccccCCCCEEEEe--CCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence            33222110 111123445677888  7 6666666666788999998877653332 2211    247788888855555


Q ss_pred             -ecCCeEEEEeCCCCcccc----ccccC----c---------ccccceEEEe---------ecCCCCCCCeEEEeecCCe
Q psy12911        177 -TAGRGIVLYQLEGKPQEF----KKTES----P---------LKYQNRCIAI---------FRDKKKQPAGYGLGSVEGR  229 (356)
Q Consensus       177 -~~d~~i~i~d~~~~~~~~----~~~~~----~---------~~~~i~~~~~---------~~~~~~~~~~~~~~~~dg~  229 (356)
                       ...+.|..++.......+    .....    .         .-.....+++         .++    +.++++-...+.
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~----g~lyvaD~~n~~  366 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE----YDFYFCDRDSHT  366 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC----EEEEEEETTTTE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC----CcEEEEECCCCE
Confidence             456899998876321110    00000    0         0123456777         333    455555556677


Q ss_pred             EEEEEeCCCCCCCcceeeeecC---CCCCCC----cccccceEEEEEe-CCCCEEEEEcCCCeEEEEEcC
Q psy12911        230 VAIQYVNPANPKDNFTFKCHRS---NGGAGG----VQDIYAVNGIVFH-PVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       230 i~i~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~i~~i~~s-p~~~~l~s~~~dg~i~iwd~~  291 (356)
                      |+.++.+.    .+.++.+...   .....+    .........|+++ ++|.++++=..+++|+.++++
T Consensus       367 I~~~~~~G----~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          367 VRVLTPEG----RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEECTTS----EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEECCCC----CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            77775321    2223322211   000000    0111246789999 677777777778889988764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.50  E-value=0.00012  Score=62.73  Aligned_cols=150  Identities=9%  Similarity=0.044  Sum_probs=94.7

Q ss_pred             CeeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-C----eEEEEE
Q psy12911         31 SISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-K----TVKCWD  104 (356)
Q Consensus        31 ~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g----~i~vwd  104 (356)
                      ....++++| ++   ..|+++...+.|+.+|.+.  ..+ ..+.........++|++++++|+.+... +    .+.+++
T Consensus       138 ~P~~lavdp~~~---g~Lyv~d~~~~I~~id~~~--~~v-~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          138 GAVWLSFDPKNH---NHLYLVGEQHPTRLIDFEK--EYV-STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             CCCEEEEETTEE---EEEEEEEBTEEEEEEETTT--TEE-EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred             CCCEEEECCCCC---CeEEEEeCCCcEEEEECCC--CEE-EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence            456889998 45   5666666557888898876  222 2233345568899999999966666542 1    344444


Q ss_pred             cCCCcee--eecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEEeCC----CeeEEEecCCCeEEEE-
Q psy12911        105 LASNQSM--QVAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTINLP----ERCYCADVDYPLAVVG-  176 (356)
Q Consensus       105 ~~~~~~~--~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-  176 (356)
                      . .+...  ...........++++  + ++.++++-..++.|..+|...+.........    ...++++++++.++++ 
T Consensus       212 ~-~g~~~~~~~l~~~~~p~giavd--p~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          212 R-ESGFKVITELTKGQNCNGAETH--PINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             G-GGTSCSEEEEEECSSCCCEEEC--TTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             C-CCceeeeeeeccCCCceEEEEe--CCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence            3 33322  111123445778888  7 6766666667789999998766542223221    3457788888855554 


Q ss_pred             ecCCeEEEEeCCC
Q psy12911        177 TAGRGIVLYQLEG  189 (356)
Q Consensus       177 ~~d~~i~i~d~~~  189 (356)
                      ...+.|..++...
T Consensus       289 ~~~~~I~~~~~d~  301 (430)
T 3tc9_A          289 VNQHYILRSDYDW  301 (430)
T ss_dssp             TTTTEEEEEEEET
T ss_pred             CCCCEEEEEeCCc
Confidence            5678999988764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=0.00014  Score=62.41  Aligned_cols=236  Identities=6%  Similarity=-0.047  Sum_probs=134.5

Q ss_pred             ceeEEEEcc-CCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC-C----eEEEEeCCCC
Q psy12911         78 PVLDVAWID-DGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD-K----TLKFWDLRTP  151 (356)
Q Consensus        78 ~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g----~i~iwd~~~~  151 (356)
                      ....|+++| ++..|+.+...+.|+.+|+.++....+.........++|+  ++++.|+.+... +    .+..++. .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d--~~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWT--HEADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEEC--TTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEe--CCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            456889998 4556766665588999999887766655556678899999  999866665542 2    3444443 33


Q ss_pred             Cce--EEEe--CCCeeEEEec-CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCC-eEEEee
Q psy12911        152 QPI--MTIN--LPERCYCADV-DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPA-GYGLGS  225 (356)
Q Consensus       152 ~~~--~~~~--~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~  225 (356)
                      ...  ..+.  .+...+++++ .+.++++-..++.|..++..+...... ...........++++|+    +. ++++-.
T Consensus       215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~-~~~~~~~~P~gia~~pd----G~~lyv~d~  289 (430)
T 3tc9_A          215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL-FTIQDSGWEFHIQFHPS----GNYAYIVVV  289 (430)
T ss_dssp             TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE-EECSSSSCCEEEEECTT----SSEEEEEET
T ss_pred             ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EEcCCCCcceeEEEcCC----CCEEEEEEC
Confidence            222  2222  2224456666 444444555678999999986543111 11111234678999999    66 555556


Q ss_pred             cCCeEEEEEeCCCCC--CCcceeeeecCCCC-CCC---cccccceE-EEEEe--------CCCCEEEEEcCCCeEEEEEc
Q psy12911        226 VEGRVAIQYVNPANP--KDNFTFKCHRSNGG-AGG---VQDIYAVN-GIVFH--------PVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       226 ~dg~i~i~~~~~~~~--~~~~~~~~~~~~~~-~~~---~~~~~~i~-~i~~s--------p~~~~l~s~~~dg~i~iwd~  290 (356)
                      ..+.|..++.+....  .....+.+...... ..+   ......-. .++..        ++|.++++=...+.|+.++.
T Consensus       290 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~  369 (430)
T 3tc9_A          290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP  369 (430)
T ss_dssp             TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT
T ss_pred             CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC
Confidence            788899988875321  11223322211000 000   00001223 45554        34667777677788999884


Q ss_pred             CcceecCCC-------CC----------CccceEEEEECCCCCEEEEEe
Q psy12911        291 DARTKLKPS-------EA----------MDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       291 ~~~~~~~~~-------~~----------~~~~v~~~~~s~~~~~l~~~s  322 (356)
                       +|+.....       .+          .-.....++++|++..|..+.
T Consensus       370 -~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD  417 (430)
T 3tc9_A          370 -QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGD  417 (430)
T ss_dssp             -TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred             -CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEE
Confidence             45432211       11          012468999999655555553

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.44  E-value=7.2e-05  Score=66.77  Aligned_cols=188  Identities=13%  Similarity=0.063  Sum_probs=105.3

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcc-------eeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccC
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEP-------VLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHD  117 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  117 (356)
                      ..+++++.++.|.-+|..++...-..........       -..+++  .+..++.++.|+.|..+|..+|+.+......
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            3566666645588899887432211111111000       012222  3457888888999999999999986522111


Q ss_pred             C-----Cee-EEEEEe-CCCCC-eEEEEE------CCCeEEEEeCCCCCceEEEeCCCe---------------------
Q psy12911        118 A-----PVK-TCHWIK-APNYT-CLMTGS------WDKTLKFWDLRTPQPIMTINLPER---------------------  162 (356)
Q Consensus       118 ~-----~v~-~~~~~~-~~~~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~---------------------  162 (356)
                      .     .+. ...... ..+++ .+++++      .++.|+.+|.++++.+........                     
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w  226 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence            1     111 111110 01233 565654      378999999999998877654210                     


Q ss_pred             -----------------------eEEEecCCCeEEEEec--------------------C----CeEEEEeCCCCccccc
Q psy12911        163 -----------------------CYCADVDYPLAVVGTA--------------------G----RGIVLYQLEGKPQEFK  195 (356)
Q Consensus       163 -----------------------~~~~~~~~~~~~~~~~--------------------d----~~i~i~d~~~~~~~~~  195 (356)
                                             ..++++....++++..                    |    +.|..+|..+++....
T Consensus       227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~  306 (582)
T 1flg_A          227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF  306 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred             CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence                                   1233334456666653                    2    6899999998876555


Q ss_pred             cccCcccc----cc-eEEEee---cCCCCCC---CeEEEeecCCeEEEEEeCCC
Q psy12911        196 KTESPLKY----QN-RCIAIF---RDKKKQP---AGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       196 ~~~~~~~~----~i-~~~~~~---~~~~~~~---~~~~~~~~dg~i~i~~~~~~  238 (356)
                      .....+..    .+ .-+.+.   .+    +   ..++.++.+|.++++|.+.+
T Consensus       307 ~q~~~~d~wd~~~~~~p~l~~~~~~~----G~~~~~v~~~~~~G~l~~lD~~tG  356 (582)
T 1flg_A          307 YQHTPNDAWDFSGNNELVLFDYKAKD----GKIVKATAHADRNGFFYVVDRSNG  356 (582)
T ss_dssp             EESSTTCCSCCCCCCCCEEEEEECSS----SCEEEEEEEECTTSEEEEEETTTC
T ss_pred             EeCCCCCcccccCCCCcEEEeeecCC----CCEEEEEEEECCCceEEEEECCCC
Confidence            43322211    01 111111   23    3   36788899999999998665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.41  E-value=0.00037  Score=54.71  Aligned_cols=198  Identities=9%  Similarity=0.049  Sum_probs=121.4

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec-cCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-GMSEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      .+.+-.+.+..++|+|++  +.+.++...++.|...|...  . ..+.+. +-....-.|++.+++.++++.-.++.+.+
T Consensus        21 ~l~g~~~~lSGla~~~~~--~~L~aV~d~~~~I~~ld~~g--~-v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~   95 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQS--NTLFSTINKPAAIVEMTTNG--D-LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYV   95 (255)
T ss_dssp             ECTTCCSCEEEEEEETTT--TEEEEEEETTEEEEEEETTC--C-EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred             ECCCcccCcceeEEeCCC--CEEEEEECCCCeEEEEeCCC--C-EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence            345666789999999986  25666677788888888762  3 223332 22356778899988877676656788999


Q ss_pred             EEcCCCcee---e-e------cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC---CCCceEEEeC----------
Q psy12911        103 WDLASNQSM---Q-V------AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR---TPQPIMTINL----------  159 (356)
Q Consensus       103 wd~~~~~~~---~-~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~----------  159 (356)
                      +++.....+   . .      ...+.....++|.  +.++.|+++.+.....+|.+.   ....+..+..          
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d--~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYS--RQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEE--TTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEEe--CCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence            987654421   1 1      1234456899999  887777777665555555543   1112222211          


Q ss_pred             CCeeEEEecCCC-eEEEEecCCeEEEEeCCCCccccccccCcc------cccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911        160 PERCYCADVDYP-LAVVGTAGRGIVLYQLEGKPQEFKKTESPL------KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI  232 (356)
Q Consensus       160 ~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i  232 (356)
                      .-..+.+++... +++.......+..+|...............      -.+...|++.++    ++ +.+.+.-+.++.
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~----G~-lyIvsE~n~~y~  248 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS----GN-IYIVSEPNRFYR  248 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTT----CC-EEEEETTTEEEE
T ss_pred             CceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCC----CC-EEEEcCCceEEE
Confidence            123555565554 555566678888999887643333333211      136689999998    65 444466665554


Q ss_pred             E
Q psy12911        233 Q  233 (356)
Q Consensus       233 ~  233 (356)
                      +
T Consensus       249 f  249 (255)
T 3qqz_A          249 F  249 (255)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.39  E-value=0.00054  Score=56.13  Aligned_cols=229  Identities=10%  Similarity=-0.020  Sum_probs=135.3

Q ss_pred             EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEE-EEcCCCeEEEEEcCCCceee--ecccCCCeeE
Q psy12911         46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVF-MAGCDKTVKCWDLASNQSMQ--VAQHDAPVKT  122 (356)
Q Consensus        46 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~--~~~~~~~v~~  122 (356)
                      +|+.+. ...|+..+++.........+. ....+.+++|.+.+..|+ +-...+.|..+++..+....  ....-.....
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g   83 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG   83 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence            444443 467999999874212212222 234567899998655555 44557899999988764221  2222345677


Q ss_pred             EEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEec--CCeEEEEeCCCCcccccc
Q psy12911        123 CHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGTA--GRGIVLYQLEGKPQEFKK  196 (356)
Q Consensus       123 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~  196 (356)
                      +++.  + .+.++++-...+.|.++++........+...   ...+++++....++.+..  .+.|..+++.........
T Consensus        84 lavd--~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~  161 (318)
T 3sov_A           84 LACD--WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII  161 (318)
T ss_dssp             EEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred             EEEE--cCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence            8887  6 4455555556788999998654333222211   235566666666666653  578888888764322111


Q ss_pred             ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee-ecCCCCCCCcccccceEEEEEeCCCCE
Q psy12911        197 TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC-HRSNGGAGGVQDIYAVNGIVFHPVHGT  275 (356)
Q Consensus       197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~sp~~~~  275 (356)
                       . ..-.....++++++.   +.++++-+..+.|..++++...   ...+.. ...           ....+++.. +.+
T Consensus       162 -~-~~l~~Pnglavd~~~---~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~-----------~P~glav~~-~~l  221 (318)
T 3sov_A          162 -N-SEIYWPNGLTLDYEE---QKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLP-----------HPFALTLFE-DIL  221 (318)
T ss_dssp             -C-SSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCS---CEEEECSCCS-----------CEEEEEEET-TEE
T ss_pred             -E-CCCCCccEEEEeccC---CEEEEEECCCCEEEEEcCCCCc---eEEEecCCCC-----------CceEEEEeC-CEE
Confidence             1 112345889999862   4455555667889999887532   222221 111           356777753 455


Q ss_pred             EEEEcCCCeEEEEEcCcceecCC
Q psy12911        276 LATVGSEGTFSFWDKDARTKLKP  298 (356)
Q Consensus       276 l~s~~~dg~i~iwd~~~~~~~~~  298 (356)
                      +.+-...+.|..++..+|+....
T Consensus       222 ywtd~~~~~V~~~~~~~G~~~~~  244 (318)
T 3sov_A          222 YWTDWSTHSILACNKYTGEGLRE  244 (318)
T ss_dssp             EEEETTTTEEEEEETTTCCSCEE
T ss_pred             EEEecCCCeEEEEECCCCCceEE
Confidence            66666778999999877765433

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.34  E-value=0.00084  Score=55.86  Aligned_cols=218  Identities=7%  Similarity=-0.070  Sum_probs=125.9

Q ss_pred             eEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEE-ECCCeEEEEeCCCCCceEEEe
Q psy12911         80 LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTG-SWDKTLKFWDLRTPQPIMTIN  158 (356)
Q Consensus        80 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~  158 (356)
                      +|.+..++. +|+.+. ...|+..++.......+......+..++|.  +....|+.+ ...+.|+.+++........+.
T Consensus        37 ~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d--~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  112 (349)
T 3v64_C           37 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFH--HRRELVFWSDVTLDRILRANLNGSNVEEVVS  112 (349)
T ss_dssp             CEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             cccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEe--ccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence            344444433 444443 356888888776655544445568899998  655555544 467889999987665444333


Q ss_pred             CC---CeeEEEecCCCeEEE-EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-CeEEEE
Q psy12911        159 LP---ERCYCADVDYPLAVV-GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-GRVAIQ  233 (356)
Q Consensus       159 ~~---~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-g~i~i~  233 (356)
                      ..   ...+++++.+..++. -...+.|.+.++.........  .........+++.|..   +.++++-... +.|..+
T Consensus       113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~--~~~l~~P~~iavdp~~---g~ly~td~~~~~~I~r~  187 (349)
T 3v64_C          113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL--WQSLEKPRAIALHPME---GTIYWTDWGNTPRIEAS  187 (349)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--CTTCSCEEEEEEETTT---TEEEEEECSSSCEEEEE
T ss_pred             CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE--eCCCCCcceEEEecCc---CeEEEeccCCCCEEEEE
Confidence            21   245677766665544 455689999998865422211  1122456889999862   4444554444 778888


Q ss_pred             EeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEE-EEcCCCeEEEEEcCcceecCCCCCCccceEEEEEC
Q psy12911        234 YVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLA-TVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALN  312 (356)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  312 (356)
                      +++....   ..+.. ..         ....+.++++|++..|. +-...+.|..+|+........+.........+++ 
T Consensus       188 ~~dG~~~---~~~~~-~~---------~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-  253 (349)
T 3v64_C          188 SMDGSGR---RIIAD-TH---------LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-  253 (349)
T ss_dssp             ETTSCSC---EESCC-SS---------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-
T ss_pred             eCCCCCc---EEEEE-CC---------CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-
Confidence            7765421   11111 11         01578999998765554 4455688999998743222222222334567777 


Q ss_pred             CCCCEEEEE
Q psy12911        313 HNGQIFAYA  321 (356)
Q Consensus       313 ~~~~~l~~~  321 (356)
                      ..+ .|..+
T Consensus       254 ~~~-~ly~t  261 (349)
T 3v64_C          254 FED-SLYWT  261 (349)
T ss_dssp             ETT-EEEEE
T ss_pred             ECC-EEEEe
Confidence            233 44444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.32  E-value=1.2e-05  Score=73.33  Aligned_cols=241  Identities=10%  Similarity=-0.081  Sum_probs=134.0

Q ss_pred             CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-CCCeEEEEEcCC----Cceeeec-ccCCCeeEEEEE
Q psy12911         53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWDLAS----NQSMQVA-QHDAPVKTCHWI  126 (356)
Q Consensus        53 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~----~~~~~~~-~~~~~v~~~~~~  126 (356)
                      .+.|++.++....  ....+. ....+..++|.+.+..|+.+. ..+.|+.+++.+    .....+. ........|++.
T Consensus       385 ~~~I~~id~~~~~--~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD  461 (699)
T 1n7d_A          385 RHEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  461 (699)
T ss_dssp             TTC-CEECTTSCC--EECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred             ccceEEEeCCCCc--ceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence            3578888876622  212222 234567899998777776654 467899999875    2222222 122335567776


Q ss_pred             eCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEEec--CCeEEEEeCCCCccccccccCcc
Q psy12911        127 KAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVGTA--GRGIVLYQLEGKPQEFKKTESPL  201 (356)
Q Consensus       127 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~  201 (356)
                      + ..+.++++-...+.|.++++........+..   ....+++++.+..|+.+..  .+.|..+++......... . ..
T Consensus       462 ~-~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~-~-~~  538 (699)
T 1n7d_A          462 W-IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-T-EN  538 (699)
T ss_dssp             C-SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES-C-SS
T ss_pred             e-eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE-e-CC
Confidence            1 2344555545668899999865443333221   1235566665666665543  267888877654322111 1 11


Q ss_pred             cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC
Q psy12911        202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS  281 (356)
Q Consensus       202 ~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~  281 (356)
                      -.....|++.|+.   +.++++-...+.|..++++...   ...+.....     ...   ....|++..+ .++++...
T Consensus       539 l~~PnGlavd~~~---~~LY~aD~~~~~I~~~d~dG~~---~~~~~~~~~-----~~~---~P~glavd~~-~lywtd~~  603 (699)
T 1n7d_A          539 IQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNGGN---RKTILEDEK-----RLA---HPFSLAVFED-KVFWTDII  603 (699)
T ss_dssp             CSSCCCEEECTTT---CCEEEEETTTTEEEEECSSSSC---CEEECCCSS-----SCS---SCCCCEEETT-EEEEECST
T ss_pred             CCCccEEEEeccC---CEEEEEecCCCeEEEEccCCCc---eEEEEecCC-----cCC---CceEeEEECC-EEEEEeCC
Confidence            2346789999873   4455555667788888886532   122211100     000   2334556543 45556666


Q ss_pred             CCeEEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911        282 EGTFSFWDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                      .+.|..++..+++.+..+.........|++.+.
T Consensus       604 ~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~  636 (699)
T 1n7d_A          604 NEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQ  636 (699)
T ss_dssp             TTCEEEEETTTEEEEECCCTTCSSCCCCCBCSS
T ss_pred             CCeEEEEEccCCCceEEeecCCCCCcEEEEeCc
Confidence            789999998888877776543334455554433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.25  E-value=0.00096  Score=56.35  Aligned_cols=217  Identities=7%  Similarity=-0.065  Sum_probs=124.8

Q ss_pred             EEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeE-EEEECCCeEEEEeCCCCCceEEEeC
Q psy12911         81 DVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCL-MTGSWDKTLKFWDLRTPQPIMTINL  159 (356)
Q Consensus        81 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~  159 (356)
                      +.+..+. .+|+.+. ...|+..++.......+......+..++|.  +....| ++-...+.|+.+++........+..
T Consensus        81 C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d--~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  156 (386)
T 3v65_B           81 CKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFH--HRRELVFWSDVTLDRILRANLNGSNVEEVVST  156 (386)
T ss_dssp             EEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred             ECCcccc-ceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEe--cCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence            4444442 3444443 467888898877665555555668899998  654444 4444678899999876654333332


Q ss_pred             ---CCeeEEEecCCCeEEE-EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-CeEEEEE
Q psy12911        160 ---PERCYCADVDYPLAVV-GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-GRVAIQY  234 (356)
Q Consensus       160 ---~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-g~i~i~~  234 (356)
                         ....+++++....|+. -...+.|.+.++.........  .........+++.|..   +.++++-... +.|..++
T Consensus       157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~--~~~l~~P~giavdp~~---g~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL--WQSLEKPRAIALHPME---GTIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE--CSSCSCEEEEEEETTT---TEEEEEECSSSCEEEEEE
T ss_pred             CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee--cCCCCCCcEEEEEcCC---CeEEEeccCCCCEEEEEe
Confidence               1235677766655544 445678888888765322211  1122456889999872   3344444444 6777777


Q ss_pred             eCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEE-EEcCCCeEEEEEcCcceecCCCCCCccceEEEEECC
Q psy12911        235 VNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLA-TVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNH  313 (356)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  313 (356)
                      ++...   ...+.. ...         ...+.|+++|++..|+ +-+..+.|..+|+........+.........+++ .
T Consensus       232 ~dG~~---~~~~~~-~~~---------~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~  297 (386)
T 3v65_B          232 MDGSG---RRIIAD-THL---------FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-F  297 (386)
T ss_dssp             TTSCS---CEEEEC-SSC---------SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-E
T ss_pred             CCCCC---cEEEEE-CCC---------CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-E
Confidence            76532   222211 110         1478999998765554 4456688999998743322222222334567777 3


Q ss_pred             CCCEEEEE
Q psy12911        314 NGQIFAYA  321 (356)
Q Consensus       314 ~~~~l~~~  321 (356)
                      .+ .|..+
T Consensus       298 ~~-~ly~t  304 (386)
T 3v65_B          298 ED-SLYWT  304 (386)
T ss_dssp             TT-EEEEE
T ss_pred             CC-EEEEe
Confidence            33 44444

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.24  E-value=0.00089  Score=54.53  Aligned_cols=226  Identities=10%  Similarity=0.023  Sum_probs=116.7

Q ss_pred             eEEEEEeC--CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC----CeEEEEEcCCCceeeecccC-
Q psy12911         45 YFLIAGSW--DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD----KTVKCWDLASNQSMQVAQHD-  117 (356)
Q Consensus        45 ~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~-  117 (356)
                      .+++.|+.  ...+.+||..+.....+..+......-..+.  -++..++.|+.+    ..+.+||+.+.+........ 
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            56666664  3578889988744333222222222222222  256677777754    67899999888755432211 


Q ss_pred             CCeeEEEEEeCCCCCeEEEEECC------CeEEEEeCCCCCceEEEeCCC--e-eEEEecCCCeEEEEec---------C
Q psy12911        118 APVKTCHWIKAPNYTCLMTGSWD------KTLKFWDLRTPQPIMTINLPE--R-CYCADVDYPLAVVGTA---------G  179 (356)
Q Consensus       118 ~~v~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~---------d  179 (356)
                      ......+..  .++.+++.|+.+      ..+.+||+.+.+-...-..+.  . ..+....+..++.|+.         .
T Consensus        91 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  168 (306)
T 3ii7_A           91 PRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVL  168 (306)
T ss_dssp             CCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEEC
T ss_pred             cccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccccc
Confidence            111111222  456777787765      458899988765332211111  1 1222334445555543         3


Q ss_pred             CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-----CeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        180 RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-----GRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       180 ~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                      ..+.+||+.+..-...... +....-.++... +    +.+++.|+.+     ..+.+||........+..+.....   
T Consensus       169 ~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~---  239 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPM-IEARKNHGLVFV-K----DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV---  239 (306)
T ss_dssp             CCEEEEETTTTEEEEECCC-SSCCBSCEEEEE-T----TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS---
T ss_pred             ceEEEeCCCCCeEEECCCc-cchhhcceEEEE-C----CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc---
Confidence            5588999987642211111 111111222222 3    4677777654     357778776553322222221111   


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcc
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDAR  293 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~  293 (356)
                              ....+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus       240 --------~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          240 --------TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             --------CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             --------ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence                    2223333  67788888754     46888998765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.24  E-value=0.00024  Score=58.05  Aligned_cols=178  Identities=12%  Similarity=0.143  Sum_probs=109.2

Q ss_pred             CCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEe----cCCC---eEEEEec---CCeEEEEeCCCCcccccccc
Q psy12911        130 NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCAD----VDYP---LAVVGTA---GRGIVLYQLEGKPQEFKKTE  198 (356)
Q Consensus       130 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~----~~~~---~~~~~~~---d~~i~i~d~~~~~~~~~~~~  198 (356)
                      ...+++.....+-+.+||+ +++.++.+.... +-+.+.    ..+.   ++++...   +++|.+|++......+....
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~  117 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT  117 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence            4456777777889999999 899999887522 222222    2222   2333333   57999998753222233331


Q ss_pred             C---c--cc-ccceEEEe--ecCCCCCCCeEEEeecCCeEEEEEeCCC-----CCCCcceeeeecCCCCCCCcccccceE
Q psy12911        199 S---P--LK-YQNRCIAI--FRDKKKQPAGYGLGSVEGRVAIQYVNPA-----NPKDNFTFKCHRSNGGAGGVQDIYAVN  265 (356)
Q Consensus       199 ~---~--~~-~~i~~~~~--~~~~~~~~~~~~~~~~dg~i~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~  265 (356)
                      .   +  .. ..+..+++  ++..  ...++++...+|.+..|++...     ..+.+.++....            .+.
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~--g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs------------q~E  183 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKT--GKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS------------QTE  183 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTT--CCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS------------CEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCC--CcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC------------Ccc
Confidence            1   1  11 45666777  4531  1236788888899999988431     113344444332            588


Q ss_pred             EEEEeCCCCEEEEEcCCCeEEEEEcC-----cceecCCCC-CC-ccceEEEEE--CCCCC-EEEEEe
Q psy12911        266 GIVFHPVHGTLATVGSEGTFSFWDKD-----ARTKLKPSE-AM-DMSISTCAL--NHNGQ-IFAYAV  322 (356)
Q Consensus       266 ~i~~sp~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~-~~-~~~v~~~~~--s~~~~-~l~~~s  322 (356)
                      .|...+....|+.+-++.-|..++.+     +++.+..+. ++ ...+..|++  .++++ +|++++
T Consensus       184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs  250 (355)
T 3amr_A          184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS  250 (355)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence            89999988999999998777777754     344554442 22 236778877  56777 677766

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.21  E-value=0.00098  Score=54.12  Aligned_cols=226  Identities=13%  Similarity=0.134  Sum_probs=115.0

Q ss_pred             eEEEEEe-CC-----CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-----CeEEEEEcCCCc---e
Q psy12911         45 YFLIAGS-WD-----NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-----KTVKCWDLASNQ---S  110 (356)
Q Consensus        45 ~~l~~~~-~d-----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~---~  110 (356)
                      .+++.|+ .+     ..+.+||..+........+....... +++ ..++..++.|+.+     ..+.+||+.+.+   .
T Consensus        16 ~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             EEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             EEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            6677776 33     36888998774333322222211111 222 2356677777754     468999998877   4


Q ss_pred             eeecc--cCCCeeEEEEEeCCCCCeEEEEECC-----CeEEEEeCCCCCceEEEeCCC--e-eEEEecCCCeEEEEecC-
Q psy12911        111 MQVAQ--HDAPVKTCHWIKAPNYTCLMTGSWD-----KTLKFWDLRTPQPIMTINLPE--R-CYCADVDYPLAVVGTAG-  179 (356)
Q Consensus       111 ~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d-  179 (356)
                      .....  ....-.++..   .++.+++.|+.+     ..+.+||+.+.+-...-..+.  . ..+....+..++.|+.+ 
T Consensus        94 ~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  170 (301)
T 2vpj_A           94 YSVAPMNVRRGLAGATT---LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDG  170 (301)
T ss_dssp             EEECCCSSCCBSCEEEE---ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             EECCCCCCCccceeEEE---ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCC
Confidence            43221  1111122222   456777777654     368899988765333222221  1 12223344555566543 


Q ss_pred             ----CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-----CeEEEEEeCCCCCCCcceeeeec
Q psy12911        180 ----RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-----GRVAIQYVNPANPKDNFTFKCHR  250 (356)
Q Consensus       180 ----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~  250 (356)
                          ..+.+||+.+..-...... +....-.++... +    +.+++.|+.+     ..+.+||........+..+....
T Consensus       171 ~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r  244 (301)
T 2vpj_A          171 LNILNSVEKYDPHTGHWTNVTPM-ATKRSGAGVALL-N----DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR  244 (301)
T ss_dssp             SCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE-T----TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred             CcccceEEEEeCCCCcEEeCCCC-CcccccceEEEE-C----CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence                5688999887642211111 111111222222 3    4677777764     45788887655322221111111


Q ss_pred             CCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcce
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDART  294 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~~  294 (356)
                      .           ....+.+  ++++++.|+.+     ..|.+||+++.+
T Consensus       245 ~-----------~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          245 C-----------YVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             B-----------SCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             c-----------ceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            0           1222222  66777787765     357888887643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.19  E-value=0.0017  Score=59.94  Aligned_cols=228  Identities=11%  Similarity=-0.079  Sum_probs=130.4

Q ss_pred             EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEE-EEcCCCeEEEEEcCCC----ceee-ecccCCC
Q psy12911         46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVF-MAGCDKTVKCWDLASN----QSMQ-VAQHDAP  119 (356)
Q Consensus        46 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~----~~~~-~~~~~~~  119 (356)
                      +|+.+. ...|+..++....  . ..+......+..|+|.+.+..|+ +-...+.|+.+++...    .... +......
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~--~-~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~  472 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSE--Y-TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA  472 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCC--C-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred             cccccc-ccceeEeeccCCc--c-eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence            444443 3568888876532  2 22223345678999998555555 4445688999998753    2222 2224456


Q ss_pred             eeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEec--CCeEEEEeCCCCccc
Q psy12911        120 VKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGTA--GRGIVLYQLEGKPQE  193 (356)
Q Consensus       120 v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~  193 (356)
                      ...|++.  +.+ +++++-...+.|.+.++........+...   ...+++++....|+.+..  .+.|...++......
T Consensus       473 P~GLAvD--~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~  550 (791)
T 3m0c_C          473 PDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  550 (791)
T ss_dssp             CCEEEEE--TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             cceeeee--ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence            7788888  655 45555556788999998754433333222   245677777666666653  378999988765432


Q ss_pred             cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee-cCCCCCCCcccccceEEEEEeCC
Q psy12911        194 FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH-RSNGGAGGVQDIYAVNGIVFHPV  272 (356)
Q Consensus       194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~sp~  272 (356)
                      ....  ..-.....|++.+..   +.++++-...+.|..++++...   ...+... ...      .   ....|++.. 
T Consensus       551 ~lv~--~~l~~P~GLavD~~~---~~LYwaD~~~~~I~~~d~dG~~---~~~v~~~~~~l------~---~P~glav~~-  612 (791)
T 3m0c_C          551 SLVT--ENIQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRL------A---HPFSLAVFE-  612 (791)
T ss_dssp             EEEC--SSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCS---CEEEEECTTTT------S---SEEEEEEET-
T ss_pred             EEEe--CCCCCceEEEEecCC---CeEEEEeCCCCcEEEEecCCCc---eEEEecCCCcc------C---CCCEEEEeC-
Confidence            2211  122457889998772   3444444556778888886542   2222211 110      0   244666643 


Q ss_pred             CCEEEEEcCCCeEEEEEcCcceecC
Q psy12911        273 HGTLATVGSEGTFSFWDKDARTKLK  297 (356)
Q Consensus       273 ~~~l~s~~~dg~i~iwd~~~~~~~~  297 (356)
                      +.++++-...+.|...|..+|+.+.
T Consensus       613 ~~lYwtD~~~~~I~~~dk~tG~~~~  637 (791)
T 3m0c_C          613 DKVFWTDIINEAIFSANRLTGSDVN  637 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             CEEEEEECCCCEEEEEeCCCCcceE
Confidence            3455555667888888876665433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.15  E-value=0.00092  Score=54.63  Aligned_cols=187  Identities=11%  Similarity=0.121  Sum_probs=114.4

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC----CCe--EE--EEcC--CCeEEEEEc--CCCceee
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD----GTK--VF--MAGC--DKTVKCWDL--ASNQSMQ  112 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~--l~--~~~~--dg~i~vwd~--~~~~~~~  112 (356)
                      .+++.....+-+.+||+..  +.+ ..+..  +.++.+..-|+    |+.  ++  +.-.  +++|.+|++  .++++..
T Consensus        41 s~ii~t~k~~gL~Vydl~G--~~l-~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSLDG--KML-HSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             CEEEEEETTTEEEEEETTS--CEE-EEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             cEEEEEcCCCCEEEEcCCC--cEE-EEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            5677777888999999943  333 45542  56777776662    222  33  3333  579999977  3444322


Q ss_pred             ecc------cC-CCeeEEEEEeCC-CCC-eEEEEECCCeEEEEeCC-------CCCceEEEeCCCeeEE--EecCCCeEE
Q psy12911        113 VAQ------HD-APVKTCHWIKAP-NYT-CLMTGSWDKTLKFWDLR-------TPQPIMTINLPERCYC--ADVDYPLAV  174 (356)
Q Consensus       113 ~~~------~~-~~v~~~~~~~~~-~~~-~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~--~~~~~~~~~  174 (356)
                      ...      .. ..+..+++...+ .+. ++++...+|.+..|++.       +.+.++++......-.  .+.....|+
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence            311      12 567778873225 343 67888889999999883       3356788887775544  444567999


Q ss_pred             EEecCCeEEEEeCCCCc----cccccc-cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911        175 VGTAGRGIVLYQLEGKP----QEFKKT-ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN  236 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~----~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  236 (356)
                      ++-.+..|..|+.+...    ...... .......+..+++.+.....+.+++++-.+....+|+..
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            99999888777755321    112222 223335678888864422112244444467789999986

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.14  E-value=0.0016  Score=52.83  Aligned_cols=226  Identities=11%  Similarity=0.152  Sum_probs=112.9

Q ss_pred             eEEEEEeCC----CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-----CeEEEEEcCCCceeeecc
Q psy12911         45 YFLIAGSWD----NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-----KTVKCWDLASNQSMQVAQ  115 (356)
Q Consensus        45 ~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~  115 (356)
                      .+++.|+.+    ..+.+||..+........+......- +++. -++..++.|+.+     ..+.+||..+.+......
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            566666643    35788888774332222222111111 2222 256677777754     368899998877554322


Q ss_pred             c--CCCeeEEEEEeCCCCCeEEEEECCC-----eEEEEeCCCCCceEEEeCC--Ce-eEEEecCCCeEEEEec-------
Q psy12911        116 H--DAPVKTCHWIKAPNYTCLMTGSWDK-----TLKFWDLRTPQPIMTINLP--ER-CYCADVDYPLAVVGTA-------  178 (356)
Q Consensus       116 ~--~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~-------  178 (356)
                      .  ...-.+++.   .++.+++.|+.++     .+.+||+.+.+-...-..+  .. ..+....+..++.|+.       
T Consensus        95 ~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  171 (302)
T 2xn4_A           95 MRDRRSTLGAAV---LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQC  171 (302)
T ss_dssp             CSSCCBSCEEEE---ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEE
T ss_pred             CCccccceEEEE---ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCcc
Confidence            1  111122222   4567777777653     5788998776433221111  11 1222234445555543       


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-----CeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-----GRVAIQYVNPANPKDNFTFKCHRSNG  253 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~  253 (356)
                      ...+.+||+.+..-...... +....-.++... +    +.+++.|+.+     ..+.+||........+..+...+.  
T Consensus       172 ~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~--  243 (302)
T 2xn4_A          172 LSTVECYNATTNEWTYIAEM-STRRSGAGVGVL-N----NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR--  243 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE-T----TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB--
T ss_pred             ccEEEEEeCCCCcEEECCCC-ccccccccEEEE-C----CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc--
Confidence            34588999887642211111 111111222222 3    4677777764     357788776543222211111100  


Q ss_pred             CCCCcccccceEEEEEeCCCCEEEEEcCCC-----eEEEEEcCcce
Q psy12911        254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEG-----TFSFWDKDART  294 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg-----~i~iwd~~~~~  294 (356)
                               ....+.+  ++++++.|+.++     .+.+||+.+.+
T Consensus       244 ---------~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          244 ---------NAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             ---------SCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ---------cCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence                     1112222  677778887653     48899987653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=0.0016  Score=56.33  Aligned_cols=208  Identities=6%  Similarity=-0.118  Sum_probs=118.7

Q ss_pred             eeEEEEcc-CCCeEEEEcC-CCeEEEEEcCCCceeeeccc----CCCeeEEEE-------EeCCCCCeEEEEECCC----
Q psy12911         79 VLDVAWID-DGTKVFMAGC-DKTVKCWDLASNQSMQVAQH----DAPVKTCHW-------IKAPNYTCLMTGSWDK----  141 (356)
Q Consensus        79 v~~~~~s~-~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~----~~~v~~~~~-------~~~~~~~~l~~~~~dg----  141 (356)
                      ...|+|.| +...|+.+.. .+.|++.|+.++.+..+...    ......++|       +  ++++.|+.+...+    
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d--~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA--DEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTB--CTTCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccC--CCCCEEEEEeCCCCCcc
Confidence            45889998 3555555544 46799999988877664332    235789999       8  8888666666554    


Q ss_pred             ---eEEEEeCCC-CCce-----EEEe--CCCeeEEEecCCCeEE-EEecCCeEEEEeCC-------CCcc------c---
Q psy12911        142 ---TLKFWDLRT-PQPI-----MTIN--LPERCYCADVDYPLAV-VGTAGRGIVLYQLE-------GKPQ------E---  193 (356)
Q Consensus       142 ---~i~iwd~~~-~~~~-----~~~~--~~~~~~~~~~~~~~~~-~~~~d~~i~i~d~~-------~~~~------~---  193 (356)
                         .|.+++... ++..     ..+.  .+...+++++....|+ +-..++.|..+|+.       ++..      .   
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence               266776443 2221     2222  1223456666555544 55567889999987       4432      0   


Q ss_pred             -c-ccccCcccccceEEEeecCCCCCCCe-EEEeecCCeEEEEEeCCCCCCC--cceeeeecCC-CCCCC---cccccce
Q psy12911        194 -F-KKTESPLKYQNRCIAIFRDKKKQPAG-YGLGSVEGRVAIQYVNPANPKD--NFTFKCHRSN-GGAGG---VQDIYAV  264 (356)
Q Consensus       194 -~-~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~dg~i~i~~~~~~~~~~--~~~~~~~~~~-~~~~~---~~~~~~i  264 (356)
                       . .....+.......++++|+    +.. +++-+....|+.++.+......  ...+-+.... ....+   .......
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~----G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P  374 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPT----GKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP  374 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTT----SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred             ccceeEecCCCCCceEEEEcCC----CCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence             0 1111122344578999999    664 5555677888888776543111  1233332110 00000   0011123


Q ss_pred             E-EEEEe-------CCCCEEEEEcCCCeEEEEEcCcc
Q psy12911        265 N-GIVFH-------PVHGTLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       265 ~-~i~~s-------p~~~~l~s~~~dg~i~iwd~~~~  293 (356)
                      . .++..       ++|.++++=..+.+|+.++. +|
T Consensus       375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G  410 (496)
T 3kya_A          375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG  410 (496)
T ss_dssp             EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC
T ss_pred             eEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC
Confidence            3 45554       56777777778899999984 44

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.07  E-value=0.0028  Score=51.39  Aligned_cols=157  Identities=10%  Similarity=0.015  Sum_probs=104.5

Q ss_pred             cCCcceeEEEEccCCCeEEEEc-CCCeEEEEEcCCCceeee-ccc-----C--CCeeEEEE---EeCCCCCeEEEEEC--
Q psy12911         74 GMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWDLASNQSMQV-AQH-----D--APVKTCHW---IKAPNYTCLMTGSW--  139 (356)
Q Consensus        74 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~-~~~-----~--~~v~~~~~---~~~~~~~~l~~~~~--  139 (356)
                      ....--.+++|.+....|+.++ ..++|..|+...+..... ...     .  ..+..+.|   .  ++++++++...  
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D--~~grL~vv~~~~~   87 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHD--NSKRLFAVMKNAK   87 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSS--SCCEEEEEEEETT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccC--CCCcEEEEEcccc
Confidence            3344456789987555555555 689999999986644332 211     1  13578888   5  66777775442  


Q ss_pred             -----------CCeEEEEeCC---CCCceEEEeCC----------------CeeEEEecCCCeEEEEecC-CeEEEEeCC
Q psy12911        140 -----------DKTLKFWDLR---TPQPIMTINLP----------------ERCYCADVDYPLAVVGTAG-RGIVLYQLE  188 (356)
Q Consensus       140 -----------dg~i~iwd~~---~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~d-~~i~i~d~~  188 (356)
                                 +..|..||+.   +++.+......                ..-+.++..++..++++.. +.|..++..
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                       6789999999   88887766632                2345666777777777777 888888777


Q ss_pred             CCcccccccc---CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911        189 GKPQEFKKTE---SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN  236 (356)
Q Consensus       189 ~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  236 (356)
                      ..........   .......+.|++.|+    +..|++....|.+..+|++
T Consensus       168 G~~~~~~~~~~~~~~~~~G~nGIv~~pd----g~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          168 GKTVSTFAWESGNGGQRPGYSGITFDPH----SNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             SCCEEEEEECCCCSSSCCSCSEEEEETT----TTEEEEESSSSSEEEEECS
T ss_pred             CCEEeeeeecCCCcccccCcceEEEeCC----CCEEEEEcCCCeEEEEcCC
Confidence            6532211111   112234679999999    7777777679999999987

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.06  E-value=0.0036  Score=52.10  Aligned_cols=102  Identities=11%  Similarity=0.078  Sum_probs=61.4

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee---ccCCcceeEEEEccC---CCeEEEEcC-C----
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM---QGMSEPVLDVAWIDD---GTKVFMAGC-D----   97 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~v~~~~~s~~---~~~l~~~~~-d----   97 (356)
                      -..-..++|.|+|   ++ +++..+|.|.+++ .. .......+   .........|+|+|+   +..|+.+.. .    
T Consensus        30 l~~P~~ia~~pdG---~l-~V~e~~g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~  103 (352)
T 2ism_A           30 LEVPWALAFLPDG---GM-LIAERPGRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL  103 (352)
T ss_dssp             CSCEEEEEECTTS---CE-EEEETTTEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred             CCCceEEEEcCCC---eE-EEEeCCCeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence            3456799999998   74 4556679999998 22 22221211   122356789999998   556655443 2    


Q ss_pred             -CeEEEEEcCCCce------ee-ec---ccCCCeeEEEEEeCCCCCeEEEEE
Q psy12911         98 -KTVKCWDLASNQS------MQ-VA---QHDAPVKTCHWIKAPNYTCLMTGS  138 (356)
Q Consensus        98 -g~i~vwd~~~~~~------~~-~~---~~~~~v~~~~~~~~~~~~~l~~~~  138 (356)
                       +.|..++...+..      +. +.   ........++|.  ++|.++++.+
T Consensus       104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~G  153 (352)
T 2ism_A          104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG--PDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC--TTSCEEEECC
T ss_pred             ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC--CCCCEEEEEC
Confidence             6788888775421      11 11   111234678888  8887666644

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.05  E-value=0.0049  Score=53.29  Aligned_cols=252  Identities=11%  Similarity=0.033  Sum_probs=138.9

Q ss_pred             CeeEEEecCC-CCCceEEEEE-eCCCeEEEEeccCCCceeeeeecc---CCcceeEEEE-------ccCCCeEEEEcCCC
Q psy12911         31 SISCMAFSPS-TLPQYFLIAG-SWDNNVRCWEVEPNGKTIPKSMQG---MSEPVLDVAW-------IDDGTKVFMAGCDK   98 (356)
Q Consensus        31 ~V~~~~~~~~-~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~---~~~~v~~~~~-------s~~~~~l~~~~~dg   98 (356)
                      .-..|+|.|. .   ..|+.+ ...+.|++.|.+.  ..+......   .......++|       ++++++|+++...+
T Consensus       140 ~p~~la~dp~~~---~~Lyv~~~~~~~i~~ID~~~--~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~  214 (496)
T 3kya_A          140 DNGRLAFDPLNK---DHLYICYDGHKAIQLIDLKN--RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD  214 (496)
T ss_dssp             SEEEEEEETTEE---EEEEEEEETEEEEEEEETTT--TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred             CCCEEEEccCCC---CEEEEEECCCCeEEEEECCC--CEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence            3568999983 4   444444 4446788888876  233222221   1235889999       99999777766543


Q ss_pred             -------eEEEEEcCC-Ccee-----eecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCC-------CCCc----
Q psy12911         99 -------TVKCWDLAS-NQSM-----QVAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLR-------TPQP----  153 (356)
Q Consensus        99 -------~i~vwd~~~-~~~~-----~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~-------~~~~----  153 (356)
                             .|.+++... +...     ....--.....++++  + ++.++++-..++.|..+|+.       ++..    
T Consensus       215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavd--p~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIH--PINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             TTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEEC--TTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             CCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEc--CCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence                   266665443 2221     111111234567787  7 55556666677889999987       5543    


Q ss_pred             -------eEE-EeCC----CeeEEEecCCCeEEEE-ecCCeEEEEeCCCCcccc---ccc-cC----c---------ccc
Q psy12911        154 -------IMT-INLP----ERCYCADVDYPLAVVG-TAGRGIVLYQLEGKPQEF---KKT-ES----P---------LKY  203 (356)
Q Consensus       154 -------~~~-~~~~----~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~---~~~-~~----~---------~~~  203 (356)
                             ... +..+    ...+++++.++.++++ +....|+.++.......+   ..+ ..    .         .-.
T Consensus       293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~  372 (496)
T 3kya_A          293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN  372 (496)
T ss_dssp             GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred             ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence                   122 2222    2457788888855555 566889987664422110   000 00    0         001


Q ss_pred             cce-EEEee-------cCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCC---------CC----CCCccccc
Q psy12911        204 QNR-CIAIF-------RDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSN---------GG----AGGVQDIY  262 (356)
Q Consensus       204 ~i~-~~~~~-------~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~  262 (356)
                      ... .++..       +.    +.++++=.....|+.++.+    -.+.++-+....         +.    ........
T Consensus       373 ~P~~gv~vd~~~~~~~~~----g~lyVaD~~N~rIr~i~~~----G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~  444 (496)
T 3kya_A          373 NPCQGVFVKNPDYTGEEE----YDFYFVDRLNFCVRKVTPE----GIVSTYAGRGASTSLADGNQWGTDDGDLREVARFR  444 (496)
T ss_dssp             SEEEEEEEECTTCCSSCC----EEEEEEEGGGTEEEEECTT----CBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCS
T ss_pred             CCeEEEEEccccccccCC----CeEEEEECCCCEEEEEeCC----CCEEEEecccccccccCccccccCCCCchhhhhcC
Confidence            223 33433       22    4556665667778877632    134444443110         00    00011122


Q ss_pred             ceEEEEEeCC-CCEEEEEcCCCeEEEEEcCcceecC
Q psy12911        263 AVNGIVFHPV-HGTLATVGSEGTFSFWDKDARTKLK  297 (356)
Q Consensus       263 ~i~~i~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~  297 (356)
                      .-..|+++++ |.++++=..+.+|+.++++......
T Consensus       445 ~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          445 DVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             CCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence            4678999997 7777777788899999987655444

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.96  E-value=0.0028  Score=51.60  Aligned_cols=225  Identities=13%  Similarity=0.067  Sum_probs=111.9

Q ss_pred             eEEEEEeCC----CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC----C-----CeEEEEEcCCCcee
Q psy12911         45 YFLIAGSWD----NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC----D-----KTVKCWDLASNQSM  111 (356)
Q Consensus        45 ~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i~vwd~~~~~~~  111 (356)
                      .+++.|+.+    ..+.+||..+........+......- +++. -++..++.|+.    +     ..+.+||+.+.+..
T Consensus        26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           26 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             CEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             EEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            677777642    36888998774333222222111111 2222 25666777765    2     46889999887654


Q ss_pred             eecccC--CCeeEEEEEeCCCCCeEEEEECC-----CeEEEEeCCCCCceEE--EeCCCe-eEEEecCCCeEEEEecC--
Q psy12911        112 QVAQHD--APVKTCHWIKAPNYTCLMTGSWD-----KTLKFWDLRTPQPIMT--INLPER-CYCADVDYPLAVVGTAG--  179 (356)
Q Consensus       112 ~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~d--  179 (356)
                      ......  ..-.+++.   .++.+++.|+.+     ..+.+||+.+.+-...  +..+.. ..+....+..++.|+.+  
T Consensus       104 ~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  180 (308)
T 1zgk_A          104 PCAPMSVPRNRIGVGV---IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT  180 (308)
T ss_dssp             ECCCCSSCCBTCEEEE---ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             ECCCCCcCccccEEEE---ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCC
Confidence            432111  11122222   356677777643     3588899877643221  111111 12222344455555543  


Q ss_pred             ---CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-----CeEEEEEeCCCCCCCcceeeeecC
Q psy12911        180 ---RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-----GRVAIQYVNPANPKDNFTFKCHRS  251 (356)
Q Consensus       180 ---~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~  251 (356)
                         ..+.+||+.+..-...... +......++... +    +.+++.|+.+     ..+.+||+.......+..+...+.
T Consensus       181 ~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~  254 (308)
T 1zgk_A          181 NRLNSAECYYPERNEWRMITAM-NTIRSGAGVCVL-H----NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS  254 (308)
T ss_dssp             CBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEEE-T----TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred             CcCceEEEEeCCCCeEeeCCCC-CCccccceEEEE-C----CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence               5688999887642211111 111111222222 3    4677777764     457888876553322221111110


Q ss_pred             CCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcc
Q psy12911        252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDAR  293 (356)
Q Consensus       252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~  293 (356)
                                 ....+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus       255 -----------~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          255 -----------ALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             -----------SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             -----------ceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence                       1122222  56777777754     35778887754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.95  E-value=0.0016  Score=52.93  Aligned_cols=229  Identities=10%  Similarity=0.062  Sum_probs=112.4

Q ss_pred             CCCeEEEEc-CC-----CeEEEEEcCCCceeeecccC-CCeeEEEEEeCCCCCeEEEEECC-----CeEEEEeCCCCC--
Q psy12911         87 DGTKVFMAG-CD-----KTVKCWDLASNQSMQVAQHD-APVKTCHWIKAPNYTCLMTGSWD-----KTLKFWDLRTPQ--  152 (356)
Q Consensus        87 ~~~~l~~~~-~d-----g~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~--  152 (356)
                      ++..++.|+ .+     ..+.+||+.+.+...+.... .........  .++.+++.|+.+     ..+.+||+.+.+  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            345566666 22     46889999887755432211 111112222  456777877765     469999998876  


Q ss_pred             -ceEEEeCCC---eeEEEecCCCeEEEEecC-----CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEE
Q psy12911        153 -PIMTINLPE---RCYCADVDYPLAVVGTAG-----RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL  223 (356)
Q Consensus       153 -~~~~~~~~~---~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  223 (356)
                       -...-..+.   ...+....+..++.|+.+     ..+.+||+.+..-...... +....-.+++.. +    +..++.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~  165 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM-QTAREGAGLVVA-S----GVIYCL  165 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC-SSCCBSCEEEEE-T----TEEEEE
T ss_pred             eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC-CCCcccceEEEE-C----CEEEEE
Confidence             333222111   112222344455555543     4688999887642211111 111111222222 3    467777


Q ss_pred             eecC-----CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcc
Q psy12911        224 GSVE-----GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDAR  293 (356)
Q Consensus       224 ~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~  293 (356)
                      |+.+     ..+.+||........+..+.....           ....+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus       166 GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-----------~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          166 GGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS-----------GAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB-----------SCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCCCcccceEEEEeCCCCcEEeCCCCCcccc-----------cceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            7654     457777776543222211111110           1122222  56777777764     46899998865


Q ss_pred             e--ecCCCCCCccceEEEEECCCCCEEEEEeccCCc--CCCccCCCCCC
Q psy12911        294 T--KLKPSEAMDMSISTCALNHNGQIFAYAVSYDWS--KGHEHNNPNKG  338 (356)
Q Consensus       294 ~--~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~--~~~~~~~~~~~  338 (356)
                      +  .+..+.........+.  -++++++.|+.++-.  .....+++...
T Consensus       233 ~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          233 SWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             cEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            3  3333322222222222  267777777643321  23445666543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.94  E-value=0.0082  Score=54.01  Aligned_cols=222  Identities=10%  Similarity=-0.029  Sum_probs=123.2

Q ss_pred             CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC-CCeEEEEEcCCCce-ee-ecccCCCeeEEEEEeCC
Q psy12911         53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKCWDLASNQS-MQ-VAQHDAPVKTCHWIKAP  129 (356)
Q Consensus        53 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~-~~-~~~~~~~v~~~~~~~~~  129 (356)
                      ...|+..++....... ..+...-.....++|++.+..|+.+.. .+.|..+++..... .. ....-.....+++.  +
T Consensus        17 ~~~I~~i~~~~~~~~~-~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD--~   93 (619)
T 3s94_A           17 RRDLRLVDATNGKENA-TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD--W   93 (619)
T ss_dssp             SSBEEEECCC----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE--T
T ss_pred             cccEEEEeCCCCcceE-EEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE--e
Confidence            4678888887522112 122223445789999997776665544 68899999876532 22 22233568899998  7


Q ss_pred             CCC-eEEEEECCCeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEEec--CCeEEEEeCCCCccccccccCcccc
Q psy12911        130 NYT-CLMTGSWDKTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVGTA--GRGIVLYQLEGKPQEFKKTESPLKY  203 (356)
Q Consensus       130 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~  203 (356)
                      .+. ++++-...+.|.+.++........+..   ....+++++....++.+..  .+.|...++..........  ..-.
T Consensus        94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~--~~~~  171 (619)
T 3s94_A           94 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN--SEIY  171 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--SSCS
T ss_pred             cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe--CCCC
Confidence            444 555555678999999865433222211   2245667776666666553  4677777776543222111  1234


Q ss_pred             cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC
Q psy12911        204 QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG  283 (356)
Q Consensus       204 ~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg  283 (356)
                      ....+++.++.   +.++++-...+.|..++++......+.  .+.-.           ....|++..+ .++++-...+
T Consensus       172 ~P~Glald~~~---~~LY~aD~~~~~I~~~~~dG~~~~~~~--~~~~~-----------~P~gi~~~~~-~ly~td~~~~  234 (619)
T 3s94_A          172 WPNGLTLDYEE---QKLYWADAKLNFIHKSNLDGTNRQAVV--KGSLP-----------HPFALTLFED-ILYWTDWSTH  234 (619)
T ss_dssp             SEEEEEEETTT---TEEEEEETTTCCEEEESSSCCEEC----------------------CCCEEESSS-EEEEECTTTC
T ss_pred             CCcEEEEEccC---CEEEEEeCCCCeEEEecCCCCccEEEE--eCCCC-----------CceEEEEeCC-EEEEecCCCC
Confidence            56889999872   344444455677777777654322221  11100           2346677655 4555555678


Q ss_pred             eEEEEEcCcceec
Q psy12911        284 TFSFWDKDARTKL  296 (356)
Q Consensus       284 ~i~iwd~~~~~~~  296 (356)
                      .|...|..+++..
T Consensus       235 ~V~~~d~~tg~~~  247 (619)
T 3s94_A          235 SILACNKYTGEGL  247 (619)
T ss_dssp             SEEEEESSSCCCC
T ss_pred             EEEEEECCCCccc
Confidence            8999998777543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.93  E-value=0.0027  Score=51.89  Aligned_cols=182  Identities=7%  Similarity=-0.033  Sum_probs=92.6

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC----C-------CeEEEEEcCCCceeee
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC----D-------KTVKCWDLASNQSMQV  113 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-------g~i~vwd~~~~~~~~~  113 (356)
                      .+++.|+  ..+.+||..++.... ..+..............++..++.|+.    +       ..+.+||..+.+...+
T Consensus         6 ~l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   82 (315)
T 4asc_A            6 LIFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM   82 (315)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred             EEEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence            3455555  579999998854332 222221122233333457777777773    1       2378889888775443


Q ss_pred             cccCCCe--eEEEEEeCCCCCeEEEEECC--------CeEEEEeCCCCCceEE--EeCCCe-eEEEecCCCeEEEEec--
Q psy12911        114 AQHDAPV--KTCHWIKAPNYTCLMTGSWD--------KTLKFWDLRTPQPIMT--INLPER-CYCADVDYPLAVVGTA--  178 (356)
Q Consensus       114 ~~~~~~v--~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~--  178 (356)
                      .....+-  .+++.   -++.+++.|+.+        ..+.+||+.+.+-...  +..+.. ..+....+..++.|+.  
T Consensus        83 ~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  159 (315)
T 4asc_A           83 PPLPSPRCLFGLGE---ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGS  159 (315)
T ss_dssp             CCBSSCEESCEEEE---ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCT
T ss_pred             CCCCcchhceeEEE---ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCC
Confidence            2211111  12222   356677777742        4588999887642221  111111 1222344455556655  


Q ss_pred             ----CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC-----eEEEEEeCCC
Q psy12911        179 ----GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG-----RVAIQYVNPA  238 (356)
Q Consensus       179 ----d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg-----~i~i~~~~~~  238 (356)
                          -..+.+||+.+..-...... +....-.+++.. +    +.+++.|+.++     .+.+||....
T Consensus       160 ~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFEWKELAPM-QTARSLFGATVH-D----GRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             TSCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEEE-T----TEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             CCcccceEEEEeCCCCeEEECCCC-CCchhceEEEEE-C----CEEEEEeccCCCCccceEEEEECCCC
Confidence                25788999887642211111 111111222222 3    56777777654     4667776654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.90  E-value=0.0066  Score=49.92  Aligned_cols=260  Identities=8%  Similarity=0.022  Sum_probs=130.3

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeee-e--ccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKS-M--QGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD  104 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  104 (356)
                      -...+.+|.|.+.+   ..+++ +.+|.|  |....++..-... .  ......+.++.|.+ + .+++++.++.|.. .
T Consensus        34 ~~~~~~~v~~~~~~---~~~~~-G~~g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S  104 (327)
T 2xbg_A           34 TTATILDMSFIDRH---HGWLV-GVNATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-T  104 (327)
T ss_dssp             CSSCEEEEEESSSS---CEEEE-ETTTEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-E
T ss_pred             CCCcEEEEEECCCC---cEEEE-cCCCeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-E
Confidence            34589999998776   66664 456755  3333333221111 1  12345788999976 4 3444556675544 3


Q ss_pred             cCCCceee-ec---ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC--CeeEEE--ecCCCeEEEE
Q psy12911        105 LASNQSMQ-VA---QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP--ERCYCA--DVDYPLAVVG  176 (356)
Q Consensus       105 ~~~~~~~~-~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~  176 (356)
                      ...++.-. ..   .+...+..+.+.  +++..++. +.+|.|..- ...++.-......  .....+  ...+..++ .
T Consensus       105 ~DgG~tW~~~~~~~~~~~~~~~i~~~--~~~~~~~~-~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~-~  179 (327)
T 2xbg_A          105 TDGGQSWSQIPLDPKLPGSPRLIKAL--GNGSAEMI-TNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVA-V  179 (327)
T ss_dssp             SSTTSSCEECCCCTTCSSCEEEEEEE--ETTEEEEE-ETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEE-E
T ss_pred             CCCCCCceECccccCCCCCeEEEEEE--CCCCEEEE-eCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEE-E
Confidence            33344322 11   234557788876  66665554 456655332 2234443333322  223333  33333444 4


Q ss_pred             ecCCeEEEE-eCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC-CCCCccee-eeecCCC
Q psy12911        177 TAGRGIVLY-QLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA-NPKDNFTF-KCHRSNG  253 (356)
Q Consensus       177 ~~d~~i~i~-d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~-~~~~~~~~-~~~~~~~  253 (356)
                      +.++.+..- |-...  ............+..+.+.++    +. +++++.+|.+++...+.. +...+..- ....   
T Consensus       180 g~~G~~~~S~d~gG~--tW~~~~~~~~~~~~~~~~~~~----g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~---  249 (327)
T 2xbg_A          180 SSRGSFYSTWEPGQT--AWEPHNRTTSRRLHNMGFTPD----GR-LWMIVNGGKIAFSDPDNSENWGELLSPLRRNS---  249 (327)
T ss_dssp             ETTSSEEEEECTTCS--SCEEEECCSSSCEEEEEECTT----SC-EEEEETTTEEEEEETTEEEEECCCBCTTSSCC---
T ss_pred             ECCCcEEEEeCCCCC--ceeECCCCCCCccceeEECCC----CC-EEEEeCCceEEEecCCCCCeeEeccCCcccCC---
Confidence            444544443 32111  111112233456677888776    44 445666787766532211 11111000 0000   


Q ss_pred             CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC---CCccceEEEEECCCCCEEEEE
Q psy12911        254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE---AMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~  321 (356)
                              ..+..+++.+++.+++++. +|.| ++....|+.-..+.   .....+.++.|.++++.++.+
T Consensus       250 --------~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G  310 (327)
T 2xbg_A          250 --------VGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILG  310 (327)
T ss_dssp             --------SCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEEC
T ss_pred             --------cceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEc
Confidence                    1588899998888777765 6666 34444443222222   234567888888766655554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.85  E-value=0.0094  Score=50.03  Aligned_cols=226  Identities=11%  Similarity=0.070  Sum_probs=142.0

Q ss_pred             CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEE
Q psy12911         97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVG  176 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (356)
                      +.+|.|.|+..+.......  -..-+.-.+  |..+.++.-. ..++.|+|+++.+.++.+..+..+..+.|-.+..+.-
T Consensus        47 ~~~vvIiDl~~~~~~~rrp--i~AdsAIMn--P~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~l  121 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRP--ISADSAIMN--PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL  121 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEE--CCCSEEEEC--SSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEE
T ss_pred             CCeEEEEECCCCCcceecc--cccceeeeC--CCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEE
Confidence            4589999998866543221  122334456  7777777665 6899999999999999999999999999888777777


Q ss_pred             ecCCeEEEEeCCCCccccccccCc---ccccceEEEeecCCCCCCCeEEEee-------cCCeEEEEEeCCCCCCCccee
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESP---LKYQNRCIAIFRDKKKQPAGYGLGS-------VEGRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~-------~dg~i~i~~~~~~~~~~~~~~  246 (356)
                      -.+..|+-|++.+...+.+.....   ...+|.....+++    .++++..+       -.|.+.+|..+.   +..+.+
T Consensus       122 VT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~----~kW~~l~GI~~~~~~v~G~mQLYS~er---~~sQ~i  194 (494)
T 1bpo_A          122 VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK----QKWLLLTGISAQQNRVVGAMQLYSVDR---KVSQPI  194 (494)
T ss_dssp             ECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTT----SSEEEEEEEEEETTEEEEEEEEEESTT---CCEEEE
T ss_pred             EcCCeeEEecccCCCCchhheecchhcccceEEEEEECCC----CCeEEEEeecccCCcccceEEEeeccc---cccchh
Confidence            778899999998755444443321   2456777777777    45554333       346788888875   456677


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCC---CCEEEEEcC---CCeEEEEEcCcc---eecC------C-C--CCCccceEE
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPV---HGTLATVGS---EGTFSFWDKDAR---TKLK------P-S--EAMDMSIST  308 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~---~~~l~s~~~---dg~i~iwd~~~~---~~~~------~-~--~~~~~~v~~  308 (356)
                      ++|..           ....+.+..+   ..+++.+..   .+.++|-++...   ....      . +  +.-.+-..+
T Consensus       195 eGhaa-----------~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPva  263 (494)
T 1bpo_A          195 EGHAA-----------SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA  263 (494)
T ss_dssp             CCSEE-----------EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEE
T ss_pred             eeeee-----------eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeE
Confidence            77764           3333322211   123443333   378999998542   1111      0 1  111333456


Q ss_pred             EEECCCCCEEEEEeccCCcCCCccCCCCCCceeeeccccc
Q psy12911        309 CALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFE  348 (356)
Q Consensus       309 ~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~  348 (356)
                      +..|+.-..+..-+..++   .-.||...+.++|...+..
T Consensus       264 mqvs~kygviyviTK~G~---i~lyDleTgt~i~~nrIs~  300 (494)
T 1bpo_A          264 MQISEKHDVVFLITKYGY---IHLYDLETGTCIYMNRISG  300 (494)
T ss_dssp             EEEETTTTEEEEEETTSE---EEEEETTTCCEEEEEECCS
T ss_pred             EEecccCCEEEEEecCce---EEEEecccceeeeeecccC
Confidence            666766666666655443   2456777777877776653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.83  E-value=0.011  Score=50.15  Aligned_cols=199  Identities=7%  Similarity=-0.055  Sum_probs=115.7

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC--ceeeeeeccCCcceeEEEEccCCCeE-EEEcCCCeEEEEE
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKV-FMAGCDKTVKCWD  104 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd  104 (356)
                      ....+..++|++.+  +.+.++-...+.|+.+++....  ......+.........+++.+.+..| ++-...+.|.+.+
T Consensus       110 ~~~~~~~l~~d~~~--~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~  187 (400)
T 3p5b_L          110 NLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  187 (400)
T ss_dssp             SCSCEEEEEEETTT--TEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             ccCcceEEeeeecc--CceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEe
Confidence            34567899999865  1444554567888888876421  11212222234567789998844444 4545578999999


Q ss_pred             cCCCceeeec-ccCCCeeEEEEEeCCCCCeEEEEEC--CCeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEEe-
Q psy12911        105 LASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSW--DKTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVGT-  177 (356)
Q Consensus       105 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-  177 (356)
                      +.......+. ..-.....|++.  |.+..|+....  .+.|...++........+..   ....+++++....|+.+. 
T Consensus       188 ~~g~~~~~l~~~~~~~P~~iavd--p~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~  265 (400)
T 3p5b_L          188 TKGVKRKTLFRENGSKPRAIVVD--PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  265 (400)
T ss_dssp             TTTCSEEEEEECSSCCEEEEEEE--TTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEeCCCCCcceEEEe--cccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC
Confidence            8876554432 344567899999  75555555442  36799898765443333332   224677777777777664 


Q ss_pred             cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911        178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV  235 (356)
Q Consensus       178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  235 (356)
                      ..+.|..+|+..............-.....+++..     +.++++-...+.|..++.
T Consensus       266 ~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~-----~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          266 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-----DKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEET-----TEEEEEESSSCSEEEEES
T ss_pred             CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC-----CEEEEecCCCCeEEEEEc
Confidence            46789999987653322211111122334555532     244555555666666664

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.83  E-value=0.0087  Score=48.94  Aligned_cols=183  Identities=9%  Similarity=-0.007  Sum_probs=90.5

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC----CC-------eEEEEEcCCCceeee
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC----DK-------TVKCWDLASNQSMQV  113 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg-------~i~vwd~~~~~~~~~  113 (356)
                      .+++.|+.  .+.+||..++.... ..+..............++..++.|+.    ++       .+.+||..+.+...+
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   93 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL   93 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred             hhhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence            45555553  48889988744332 222211112222333456777778873    12       277889888766543


Q ss_pred             cccCC--CeeEEEEEeCCCCCeEEEEECC-------CeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEEEec---
Q psy12911        114 AQHDA--PVKTCHWIKAPNYTCLMTGSWD-------KTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVVGTA---  178 (356)
Q Consensus       114 ~~~~~--~v~~~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---  178 (356)
                      .....  .-.+++.   .++.+++.|+.+       ..+.+||+.+.+-...-..+..   ..+....+..++.|+.   
T Consensus        94 ~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  170 (318)
T 2woz_A           94 PPLPSARCLFGLGE---VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDD  170 (318)
T ss_dssp             SCBSSCBCSCEEEE---ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESS
T ss_pred             CCCCccccccceEE---ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCC
Confidence            22111  1122222   356777777754       3588899887643322121211   1122244445555543   


Q ss_pred             ---CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC-----eEEEEEeCCCC
Q psy12911        179 ---GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG-----RVAIQYVNPAN  239 (356)
Q Consensus       179 ---d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg-----~i~i~~~~~~~  239 (356)
                         ...+.+||+.+..-...... +......+++.. +    +.+++.|+.++     .+.+||.....
T Consensus       171 ~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          171 KKCTNRVFIYNPKKGDWKDLAPM-KTPRSMFGVAIH-K----GKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             SCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE-T----TEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             CCccceEEEEcCCCCEEEECCCC-CCCcccceEEEE-C----CEEEEEcCcCCCCccceEEEEECCCCe
Confidence               24689999987642211111 111111222222 3    46777776543     45677776553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.82  E-value=0.0085  Score=48.66  Aligned_cols=224  Identities=8%  Similarity=0.051  Sum_probs=111.0

Q ss_pred             eEEEEcC--CCeEEEEEcCCCceeeecccC--CCeeEEEEEeCCCCCeEEEEECC----CeEEEEeCCCCCceEEEeCCC
Q psy12911         90 KVFMAGC--DKTVKCWDLASNQSMQVAQHD--APVKTCHWIKAPNYTCLMTGSWD----KTLKFWDLRTPQPIMTINLPE  161 (356)
Q Consensus        90 ~l~~~~~--dg~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~  161 (356)
                      .++.|+.  ...+.+||..+.+...+....  ..-.++..   .++.+++.|+.+    ..+.+||+.+.+-...-..+.
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF---WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE---ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE---ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            4555554  357899999887755432211  11122222   456677787755    678899988875433222221


Q ss_pred             --e-eEEEecCCCeEEEEecC------CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec------
Q psy12911        162 --R-CYCADVDYPLAVVGTAG------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV------  226 (356)
Q Consensus       162 --~-~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------  226 (356)
                        . ..+....+..++.|+.+      ..+.+||..+..-...... +....-.+++.. +    +.+++.|+.      
T Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~GG~~~~~~~  164 (306)
T 3ii7_A           91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM-LTQRCSHGMVEA-N----GLIYVCGGSLGNNVS  164 (306)
T ss_dssp             CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE-T----TEEEEECCEESCTTT
T ss_pred             cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC-cCCcceeEEEEE-C----CEEEEECCCCCCCCc
Confidence              1 12223344555666554      5688999887642111111 111111122222 3    456677764      


Q ss_pred             ---CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcce--ec
Q psy12911        227 ---EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDART--KL  296 (356)
Q Consensus       227 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~~--~~  296 (356)
                         ...+.+||........+..+.....           .-..+.+  ++++++.|+.+     ..+.+||+.+.+  .+
T Consensus       165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----------~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~  231 (306)
T 3ii7_A          165 GRVLNSCEVYDPATETWTELCPMIEARK-----------NHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV  231 (306)
T ss_dssp             CEECCCEEEEETTTTEEEEECCCSSCCB-----------SCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred             ccccceEEEeCCCCCeEEECCCccchhh-----------cceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence               3447777776543222211111110           1112222  56777777654     358899987653  33


Q ss_pred             CCCCCCccceEEEEECCCCCEEEEEeccC--CcCCCccCCCCC
Q psy12911        297 KPSEAMDMSISTCALNHNGQIFAYAVSYD--WSKGHEHNNPNK  337 (356)
Q Consensus       297 ~~~~~~~~~v~~~~~s~~~~~l~~~s~~d--~~~~~~~~~~~~  337 (356)
                      ..+.........+.+  ++++++.|+.++  .......|++..
T Consensus       232 ~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          232 SPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             CCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred             CCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence            333322222233333  677777776433  223334455554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.80  E-value=0.01  Score=48.78  Aligned_cols=231  Identities=9%  Similarity=-0.030  Sum_probs=114.6

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeee--eccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKS--MQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA  106 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  106 (356)
                      ...+.++.|.+ +   ..+++ +.++.|  |....++..-...  ...+...+..+.+.+++..++++ .++.|.. ...
T Consensus        79 ~~~~~~i~~~~-~---~~~~~-g~~g~i--~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~D  149 (327)
T 2xbg_A           79 DYRFNSVSFQG-N---EGWIV-GEPPIM--LHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKD  149 (327)
T ss_dssp             CCEEEEEEEET-T---EEEEE-EETTEE--EEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESS
T ss_pred             CccEEEEEecC-C---eEEEE-ECCCeE--EEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcC
Confidence            44788999986 4   55554 446644  4344333322111  11234557788887777656555 4564432 222


Q ss_pred             CCceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC--CCeeEE--EecCCCeEEEEecCC
Q psy12911        107 SNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL--PERCYC--ADVDYPLAVVGTAGR  180 (356)
Q Consensus       107 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~d~  180 (356)
                      .++.-.  .......+..+.+.  +++.+++.+ .+|.+..-+-..++.-..+..  ......  +...+ .+++++.+|
T Consensus       150 gG~tW~~~~~~~~~~~~~~~~~--~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g-~~~~~~~~G  225 (327)
T 2xbg_A          150 SGKNWQALVQEAIGVMRNLNRS--PSGEYVAVS-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDG-RLWMIVNGG  225 (327)
T ss_dssp             TTSSEEEEECSCCCCEEEEEEC--TTSCEEEEE-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTS-CEEEEETTT
T ss_pred             CCCCCEEeecCCCcceEEEEEc--CCCcEEEEE-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCC-CEEEEeCCc
Confidence            343222  23445678889988  777766655 455554432111333222222  222223  33333 455666778


Q ss_pred             eEEEEeCCCCccccccccCc---ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCC
Q psy12911        181 GIVLYQLEGKPQEFKKTESP---LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG  257 (356)
Q Consensus       181 ~i~i~d~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  257 (356)
                      .+.+.+...+.. ......+   ....+..+.+.++    +..+++ +.++.+ .+..+..  +.-..+......     
T Consensus       226 ~~~~s~~D~G~t-W~~~~~~~~~~~~~~~~v~~~~~----~~~~~~-g~~g~i-~~S~DgG--~tW~~~~~~~~~-----  291 (327)
T 2xbg_A          226 KIAFSDPDNSEN-WGELLSPLRRNSVGFLDLAYRTP----NEVWLA-GGAGAL-LCSQDGG--QTWQQDVDVKKV-----  291 (327)
T ss_dssp             EEEEEETTEEEE-ECCCBCTTSSCCSCEEEEEESSS----SCEEEE-ESTTCE-EEESSTT--SSCEECGGGTTS-----
T ss_pred             eEEEecCCCCCe-eEeccCCcccCCcceEEEEecCC----CEEEEE-eCCCeE-EEeCCCC--cccEEcCccCCC-----
Confidence            877764332211 1111111   2234677887765    444444 456766 3334432  111111111000     


Q ss_pred             cccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       258 ~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                         ...+.++.|.+++. +++++.+|.|.-++-
T Consensus       292 ---~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          292 ---PSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             ---SSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             ---CCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence               00577888876554 556667898776653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.79  E-value=0.019  Score=51.75  Aligned_cols=226  Identities=10%  Similarity=-0.051  Sum_probs=136.2

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCCCceeeecc-cCCCeeE
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLASNQSMQVAQ-HDAPVKT  122 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~-~~~~v~~  122 (356)
                      .+|+.+ ....|+..+++.........+. .-..+..++|.+.+..|+.+ ..++.|..+++.......+.. .......
T Consensus         7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G   84 (628)
T 4a0p_A            7 AFLLFS-RRADIRRISLETNNNNVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG   84 (628)
T ss_dssp             CEEEEE-ETTEEEEEESSCTTCEEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred             cEEEEE-eCCcEEEEECCCCCcceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence            455554 4568999999863322211222 23467899999976666654 457899999988665443322 2245778


Q ss_pred             EEEEeCCCCC-eEEEEECCCeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEEec--CCeEEEEeCCCCcccccc
Q psy12911        123 CHWIKAPNYT-CLMTGSWDKTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVGTA--GRGIVLYQLEGKPQEFKK  196 (356)
Q Consensus       123 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~  196 (356)
                      +++.  +.+. ++++-...+.|.+.++........+..   ....+++++....++....  .+.|...++.........
T Consensus        85 lAvD--~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~  162 (628)
T 4a0p_A           85 MAVD--WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV  162 (628)
T ss_dssp             EEEE--TTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred             EEEE--eCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE
Confidence            8887  5544 445545567899999865433222211   1235666665666666553  568888888765432221


Q ss_pred             ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEE
Q psy12911        197 TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTL  276 (356)
Q Consensus       197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l  276 (356)
                         ..-.....+++.++.   +.++++-...+.|..++++....   ..+...-.           ....+++.. +.++
T Consensus       163 ---~~~~~P~GlalD~~~---~~LY~aD~~~~~I~~~d~dG~~~---~v~~~~l~-----------~P~glav~~-~~ly  221 (628)
T 4a0p_A          163 ---PNVGRANGLTIDYAK---RRLYWTDLDTNLIESSNMLGLNR---EVIADDLP-----------HPFGLTQYQ-DYIY  221 (628)
T ss_dssp             ---CSCSSEEEEEEETTT---TEEEEEETTTTEEEEEETTSCSC---EEEEECCS-----------CEEEEEEET-TEEE
T ss_pred             ---CCCCCcceEEEcccc---CEEEEEECCCCEEEEEcCCCCce---EEeeccCC-----------CceEEEEEC-CEEE
Confidence               123456889999872   34445555677888888876432   22222111           345777764 4555


Q ss_pred             EEEcCCCeEEEEEcCccee
Q psy12911        277 ATVGSEGTFSFWDKDARTK  295 (356)
Q Consensus       277 ~s~~~dg~i~iwd~~~~~~  295 (356)
                      ++-...+.|...|..+++.
T Consensus       222 ~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          222 WTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             EEETTTTEEEEEETTTCCS
T ss_pred             EecCCCCEEEEEECCCCCc
Confidence            5666678999999766643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.77  E-value=0.025  Score=52.37  Aligned_cols=198  Identities=7%  Similarity=-0.035  Sum_probs=114.6

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc--eeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEc
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK--TIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDL  105 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~  105 (356)
                      ...+..|+|.+..  +.++++-...+.|+.+++.....  .....+.........|++.+.++.|+.+ ...+.|.+.++
T Consensus       423 ~~~~~gl~~d~~~--~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l  500 (791)
T 3m0c_C          423 LRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  500 (791)
T ss_dssp             CSSEEEEEEETTT--TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEeecccC--CeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence            4566789998854  15555555667888888865211  1122233234567789998877655544 55789999999


Q ss_pred             CCCceeeec-ccCCCeeEEEEEeCCCCCeEEEEEC-C-CeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEe-c
Q psy12911        106 ASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSW-D-KTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGT-A  178 (356)
Q Consensus       106 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~  178 (356)
                      .......+. ..-.....|++.  +.+..|+.+.. . +.|...++........+...   ...+++++....|+.+. .
T Consensus       501 dG~~~~~l~~~~l~~P~gIaVD--p~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~  578 (791)
T 3m0c_C          501 KGVKRKTLFRENGSKPRAIVVD--PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  578 (791)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEE--TTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCeEEEEEeCCCCCcceEEEe--cCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence            866554433 344568899999  76555555442 2 67999988644433333322   24567777677776664 4


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV  235 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  235 (356)
                      .+.|..+++..............-.....|++..+     .++++-...+.|...+.
T Consensus       579 ~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-----~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          579 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-----KVFWTDIINEAIFSANR  630 (791)
T ss_dssp             TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-----EEEEEETTTTEEEEEET
T ss_pred             CCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-----EEEEEECCCCEEEEEeC
Confidence            57899999876543222211111123345555332     34444445566666554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.75  E-value=0.0042  Score=50.56  Aligned_cols=227  Identities=13%  Similarity=0.141  Sum_probs=110.8

Q ss_pred             CCCeEEEEcC----CCeEEEEEcCCCceeeecccCC--CeeEEEEEeCCCCCeEEEEEC----C-----CeEEEEeCCCC
Q psy12911         87 DGTKVFMAGC----DKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSW----D-----KTLKFWDLRTP  151 (356)
Q Consensus        87 ~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~~  151 (356)
                      ++..++.|+.    -..+.+||..+.+...+.....  .-.+++.   .++.+++.|+.    +     ..+.+||+.+.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV---VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE---ETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE---ECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            4556666663    2468899988877554322111  1112222   45667777765    2     45888998776


Q ss_pred             CceEE--EeCCCe-eEEEecCCCeEEEEecC-----CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEE
Q psy12911        152 QPIMT--INLPER-CYCADVDYPLAVVGTAG-----RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL  223 (356)
Q Consensus       152 ~~~~~--~~~~~~-~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  223 (356)
                      +-...  +..+.. ..+....+..++.|+.+     ..+.+||+.+..-...... +....-.+++.. +    +.+++.
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~  174 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM-LTRRIGVGVAVL-N----RLLYAV  174 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCC-SSCCBSCEEEEE-T----TEEEEE
T ss_pred             eEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC-CccccceEEEEE-C----CEEEEE
Confidence            42221  111111 12222344455555432     4688899887642211111 111111222222 3    467777


Q ss_pred             eecC-----CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcc
Q psy12911        224 GSVE-----GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDAR  293 (356)
Q Consensus       224 ~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~  293 (356)
                      |+.+     ..+.+||........+..+...+.           .-..+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus       175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----------~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-----------GAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-----------SCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc-----------cceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            7654     457777776543222211111110           1222233  66777777764     46999998865


Q ss_pred             e--ecCCCCCCccceEEEEECCCCCEEEEEeccC--CcCCCccCCCCC
Q psy12911        294 T--KLKPSEAMDMSISTCALNHNGQIFAYAVSYD--WSKGHEHNNPNK  337 (356)
Q Consensus       294 ~--~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d--~~~~~~~~~~~~  337 (356)
                      +  .+..+.........+.  -++++++.|+.++  .......|++..
T Consensus       242 ~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          242 TWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             cEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCC
Confidence            3  2333322111222222  2677777776443  223344566554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.74  E-value=0.0035  Score=50.88  Aligned_cols=225  Identities=15%  Similarity=0.164  Sum_probs=108.2

Q ss_pred             CeEEEEcCC----CeEEEEEcCCCceeeecccCC-C-eeEEEEEeCCCCCeEEEEECC-----CeEEEEeCCCCCceEEE
Q psy12911         89 TKVFMAGCD----KTVKCWDLASNQSMQVAQHDA-P-VKTCHWIKAPNYTCLMTGSWD-----KTLKFWDLRTPQPIMTI  157 (356)
Q Consensus        89 ~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~-~-v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~  157 (356)
                      ..++.|+.+    ..+.+||+.+.+...+..... . -.+++.   .++.+++.|+.+     ..+.+||..+.+-...-
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY---MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE---ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE---ECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            345555542    457888888776544321111 1 112222   456777777755     35889998876432221


Q ss_pred             eCCC--e-eEEEecCCCeEEEEecC-----CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC--
Q psy12911        158 NLPE--R-CYCADVDYPLAVVGTAG-----RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE--  227 (356)
Q Consensus       158 ~~~~--~-~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d--  227 (356)
                      ..+.  . ..+....+..++.|+.+     ..+.+||+.+..-...... +....-.+++.. +    +..++.|+.+  
T Consensus        94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~GG~~~~  167 (302)
T 2xn4_A           94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM-NTRRSSVGVGVV-G----GLLYAVGGYDVA  167 (302)
T ss_dssp             CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC-SSCCBSCEEEEE-T----TEEEEECCEETT
T ss_pred             CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC-CCcccCceEEEE-C----CEEEEEeCCCCC
Confidence            1111  1 12223345556666654     3577888877642211111 111111222222 3    4567777643  


Q ss_pred             -----CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcce--e
Q psy12911        228 -----GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDART--K  295 (356)
Q Consensus       228 -----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~~--~  295 (356)
                           ..+.+||........+..+.....           ....+.+  ++++++.|+.+     ..+.+||+.+.+  .
T Consensus       168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  234 (302)
T 2xn4_A          168 SRQCLSTVECYNATTNEWTYIAEMSTRRS-----------GAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ  234 (302)
T ss_dssp             TTEECCCEEEEETTTTEEEEECCCSSCCB-----------SCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEE
T ss_pred             CCccccEEEEEeCCCCcEEECCCCccccc-----------cccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEee
Confidence                 347777776543222211111110           1122222  56777887764     368999987653  3


Q ss_pred             cCCCCCCccceEEEEECCCCCEEEEEeccC--CcCCCccCCCCC
Q psy12911        296 LKPSEAMDMSISTCALNHNGQIFAYAVSYD--WSKGHEHNNPNK  337 (356)
Q Consensus       296 ~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d--~~~~~~~~~~~~  337 (356)
                      +..+.........+.  .++++++.|+.++  .......|++..
T Consensus       235 ~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          235 VADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             CCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCC
Confidence            333321111112222  3677777776443  122344555553

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.73  E-value=0.023  Score=51.10  Aligned_cols=270  Identities=8%  Similarity=-0.066  Sum_probs=140.7

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeC--CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-CCCeEEEEE
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSW--DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWD  104 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd  104 (356)
                      .-..-..|++.|.+   ..|+....  .+.|...+++.  ..........-.....|++.++++.|+.+. ..+.|...|
T Consensus       125 ~l~~P~~Iavdp~~---g~ly~tD~g~~~~I~r~~~dG--~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~  199 (619)
T 3s94_A          125 ELDQPRAIALDPSS---GFMYWTDWGEVPKIERAGMDG--SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  199 (619)
T ss_dssp             SCSCCCCEEEETTT---TEEEEEECSSSCEEEEEETTS--CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred             CCCCCceEEEecCC---CeEEEeccCCCCEEEEEECCC--CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence            33456688888875   44444432  35666666554  222122222344678999999766666654 467899999


Q ss_pred             cCCCceeeecc-cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC----Ce-----------------
Q psy12911        105 LASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP----ER-----------------  162 (356)
Q Consensus       105 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~-----------------  162 (356)
                      +.......+.. .......+++.  .+ .++++-...+.|...|..+++....+...    ..                 
T Consensus       200 ~dG~~~~~~~~~~~~~P~gi~~~--~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~  276 (619)
T 3s94_A          200 LDGTNRQAVVKGSLPHPFALTLF--ED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCG  276 (619)
T ss_dssp             SSCCEEC---------CCCEEES--SS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTT
T ss_pred             CCCCccEEEEeCCCCCceEEEEe--CC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCcccccc
Confidence            87654433221 22333566664  44 45555556678888888776543332210    00                 


Q ss_pred             -------eEEE-----------ecCC--------------CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEe
Q psy12911        163 -------CYCA-----------DVDY--------------PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAI  210 (356)
Q Consensus       163 -------~~~~-----------~~~~--------------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  210 (356)
                             -+|+           .+.+              ..++..+..+.|+..++..............-..+..+++
T Consensus       277 ~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~  356 (619)
T 3s94_A          277 IDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDY  356 (619)
T ss_dssp             TTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEE
T ss_pred             CCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEE
Confidence                   0111           1110              1122223344566666654432111111111234567788


Q ss_pred             ecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEE
Q psy12911        211 FRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWD  289 (356)
Q Consensus       211 ~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd  289 (356)
                      .+..   +..+++-...+.|+.++.+...   ...+.. ...         .....+++.+.+ ++.++-+..+.|.+.+
T Consensus       357 d~~~---~~ly~sD~~~~~I~r~~~~g~~---~~~v~~-~~~---------~~p~GlAvD~~~~~lY~tD~~~~~I~v~~  420 (619)
T 3s94_A          357 DPVE---GYIYWTDDEVRAIRRSFIDGSG---SQFVVT-AQI---------AHPDGIAVDWVARNLYWTDTGTDRIEVTR  420 (619)
T ss_dssp             ETTT---TEEEEEETTTTEEEEEETTSCS---CEEEEC-SSC---------SCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EcCC---CeEEEEeCCCCeEEEEEcCCCc---cEEEEE-CCC---------CCcCceEEecccCcEEEEeCCCCcEEEEe
Confidence            7752   3444444557778877776532   112211 110         146789998754 5555666778999999


Q ss_pred             cCcceecCCCCCCccceEEEEECCCCCEEEEE
Q psy12911        290 KDARTKLKPSEAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                      +........+...-...+++++.|...+|..+
T Consensus       421 ~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~t  452 (619)
T 3s94_A          421 LNGTMRKILISEDLEEPRAIVLDPMVGYMYWT  452 (619)
T ss_dssp             TTSCSCEEEECTTCCSEEEEEEETTTTEEEEE
T ss_pred             CCCCeEEEEEECCCCCeeeEEEEcCCCcEEEe
Confidence            87442211122223456899999975555554

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.69  E-value=0.0096  Score=49.58  Aligned_cols=92  Identities=13%  Similarity=0.145  Sum_probs=48.2

Q ss_pred             eEEEEEeCC-CeEEEEeccC--CCceeeeeec-cCCcceeEEEEccCCCeEEEEcC-C---------CeEEEEEcCCCce
Q psy12911         45 YFLIAGSWD-NNVRCWEVEP--NGKTIPKSMQ-GMSEPVLDVAWIDDGTKVFMAGC-D---------KTVKCWDLASNQS  110 (356)
Q Consensus        45 ~~l~~~~~d-g~i~vw~~~~--~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-d---------g~i~vwd~~~~~~  110 (356)
                      .+++.|+.+ ..+.+||...  .....+..+. .....-.++.+  +++.++.|+. +         ..+.+||+.+.+.
T Consensus        21 ~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           21 TVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             EEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             EEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            677777643 4688888863  2233222222 11111122222  5666777765 2         4689999988775


Q ss_pred             eeecccC--CCeeEEEEEeCCCCCeEEEEECC
Q psy12911        111 MQVAQHD--APVKTCHWIKAPNYTCLMTGSWD  140 (356)
Q Consensus       111 ~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d  140 (356)
                      .......  ......+..  .++++++.|+.+
T Consensus        99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             EECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             EECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            5432211  111222222  456778888754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.69  E-value=0.014  Score=47.30  Aligned_cols=159  Identities=4%  Similarity=0.003  Sum_probs=107.4

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEe-CCCeEEEEeccCCCceeeeeecc----C--CcceeEEEE---ccCCCeEEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGS-WDNNVRCWEVEPNGKTIPKSMQG----M--SEPVLDVAW---IDDGTKVFM   93 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~----~--~~~v~~~~~---s~~~~~l~~   93 (356)
                      .+....----+++|.+..   ..|..++ ..++|..|+...+..... .+.+    .  ...+..|.|   .|+++++++
T Consensus         7 ~~~~~~~yPE~~~wd~~~---g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv   82 (334)
T 2p9w_A            7 DVKVKNLTPEDTIYDRTR---QVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAV   82 (334)
T ss_dssp             EECCTTCCCSCEEEETTT---TEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEE
T ss_pred             EecCcccCCcCccCcCCC---CEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEE
Confidence            344555566689998865   4555555 799999999875332222 3322    1  124689999   588776665


Q ss_pred             Ec-------------CCCeEEEEEcC---CCceeeecc--------------cCCCeeEEEEEeCCCCCeEEEEECC-Ce
Q psy12911         94 AG-------------CDKTVKCWDLA---SNQSMQVAQ--------------HDAPVKTCHWIKAPNYTCLMTGSWD-KT  142 (356)
Q Consensus        94 ~~-------------~dg~i~vwd~~---~~~~~~~~~--------------~~~~v~~~~~~~~~~~~~l~~~~~d-g~  142 (356)
                      ..             .+..|..+|+.   +++.+....              .......++..  ++|+..++++.. +.
T Consensus        83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD--~~GnaYVt~s~~~~~  160 (334)
T 2p9w_A           83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD--RDGNSYVAFALGMPA  160 (334)
T ss_dssp             EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC--TTSCEEEEEEESSCE
T ss_pred             EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC--CCCCEEEeCCCCCCe
Confidence            33             26789999999   777654221              11247889988  999999999988 88


Q ss_pred             EEEEeCCCCCceEEEe-CC--------CeeEEEecCCCeEEEEecCCeEEEEeCCC
Q psy12911        143 LKFWDLRTPQPIMTIN-LP--------ERCYCADVDYPLAVVGTAGRGIVLYQLEG  189 (356)
Q Consensus       143 i~iwd~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  189 (356)
                      |...+.... .+..+. ..        -.-+.+.+++..|++....+.|..+|+..
T Consensus       161 I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          161 IARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             EEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            888876533 333322 11        12667888888888887799999999984

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.66  E-value=0.045  Score=52.96  Aligned_cols=221  Identities=7%  Similarity=-0.000  Sum_probs=128.2

Q ss_pred             CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-----------------------------------
Q psy12911         53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-----------------------------------   97 (356)
Q Consensus        53 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------------------------------   97 (356)
                      ++.++|..++.......+.+. -...+..++++|+.+.++.+..+                                   
T Consensus       714 ~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (1158)
T 3ei3_A          714 NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSS  792 (1158)
T ss_dssp             SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC---
T ss_pred             CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccccc
Confidence            456999888654333333333 34577888888876654443211                                   


Q ss_pred             --------------CeEEEEEcCCCceee--ecccCCCeeEEEEEeCC--CCCeEEEEE----------CCCeEEEEeCC
Q psy12911         98 --------------KTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAP--NYTCLMTGS----------WDKTLKFWDLR  149 (356)
Q Consensus        98 --------------g~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~--~~~~l~~~~----------~dg~i~iwd~~  149 (356)
                                    +.|++.|..+.+.+.  .....+.+.+++...-.  ...+++.|+          ..|.|.+|++.
T Consensus       793 ~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~  872 (1158)
T 3ei3_A          793 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS  872 (1158)
T ss_dssp             -------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred             ccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence                          236666766666543  22334455665543212  246788776          34789999986


Q ss_pred             CCC--ceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC
Q psy12911        150 TPQ--PIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE  227 (356)
Q Consensus       150 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d  227 (356)
                      .++  .+...+..+.+.++......++++- ...+++|++...+...  .....-..+..+.....    ++++++|..-
T Consensus       873 ~~kL~lv~~~~v~g~v~al~~~~g~Lla~i-g~~l~vy~l~~~~~L~--~~~~~~~~i~~~~l~~~----~~~I~vgD~~  945 (1158)
T 3ei3_A          873 DGKLQTVAEKEVKGAVYSMVEFNGKLLASI-NSTVRLYEWTTEKELR--TECNHYNNIMALYLKTK----GDFILVGDLM  945 (1158)
T ss_dssp             TTEEEEEEEEEESSCEEEEEEETTEEEEEE-TTEEEEEEECTTSCEE--EEEEECCCSCEEEEEEE----TTEEEEEESS
T ss_pred             CCEEEEEEEEEcCCcCEEEeeeCCEEEEEc-CCEEEEEECCCCceEE--EEeeccccEEEEEEecc----CCEEEEEEhh
Confidence            442  3344445566777776666665554 5899999998654211  11111111222222222    5689999888


Q ss_pred             CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911        228 GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA  292 (356)
Q Consensus       228 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~  292 (356)
                      ..+.++.++... ..+..+..+..         ..+++++.+-.+ ..++.+..+|.|.+.....
T Consensus       946 ~Sv~~~~y~~~~-~~L~~~a~D~~---------~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          946 RSVLLLAYKPME-GNFEEIARDFN---------PNWMSAVEILDD-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             BCEEEEEEETTT-TEEEEEEECCS---------CBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred             heEEEEEEEcCC-CeEEEEEeecc---------cccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence            888887776432 22222222211         117888888755 4777889999999987653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.62  E-value=0.022  Score=47.82  Aligned_cols=230  Identities=11%  Similarity=0.134  Sum_probs=133.7

Q ss_pred             CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCC
Q psy12911         53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYT  132 (356)
Q Consensus        53 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  132 (356)
                      +..|.|-|+..+.....+.+.     --+.-.+|..+.||.-. ..++.++|+++.+.+......+.|.--.|.  .+ +
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWi--s~-~  117 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SL-N  117 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECC-----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEE--ET-T
T ss_pred             CCeEEEEECCCCCcceecccc-----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEec--CC-C
Confidence            347889998875443322332     12344677777666554 689999999999988866667788888886  44 3


Q ss_pred             eEEEEECCCeEEEEeCCC-CCceEEEeCCC-----eeEEE--ecCCCeEEEEe-------cCCeEEEEeCCCCccccccc
Q psy12911        133 CLMTGSWDKTLKFWDLRT-PQPIMTINLPE-----RCYCA--DVDYPLAVVGT-------AGRGIVLYQLEGKPQEFKKT  197 (356)
Q Consensus       133 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~-------~d~~i~i~d~~~~~~~~~~~  197 (356)
                      .|+..+ +..|+-|++.. ..+.+.+..+.     .++..  +.+..+++..+       -.|.+.+|..+.+....   
T Consensus       118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~---  193 (494)
T 1bpo_A          118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---  193 (494)
T ss_dssp             EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE---
T ss_pred             eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch---
Confidence            454444 56899999975 36777777654     34443  44445444322       24788899988753211   


Q ss_pred             cCcccccceEEEeecCCCCC-CCeEEEeec---CCeEEEEEeCCC-CCCCcceeeeecCCCCCCCcccccceEEEEEeCC
Q psy12911        198 ESPLKYQNRCIAIFRDKKKQ-PAGYGLGSV---EGRVAIQYVNPA-NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV  272 (356)
Q Consensus       198 ~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~---dg~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~  272 (356)
                      ...|-..-..  +-.++... ...+..+..   .+.++|.++... .....+..+.-.-..+. ..... --.++..|+.
T Consensus       194 ieGhaa~F~~--~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp-e~~~D-FPvamqvs~k  269 (494)
T 1bpo_A          194 IEGHAASFAQ--FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQND-FPVAMQISEK  269 (494)
T ss_dssp             ECCSEEEEEE--EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT-TSTTC-CEEEEEEETT
T ss_pred             heeeeeeeEE--EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc-ccccC-ceeEEEeccc
Confidence            1111111111  11111111 123333333   278888888543 12222222211111111 11111 2347888998


Q ss_pred             CCEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911        273 HGTLATVGSEGTFSFWDKDARTKLKPS  299 (356)
Q Consensus       273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~  299 (356)
                      ...+..-+.-|.|++||++++.++..-
T Consensus       270 ygviyviTK~G~i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          270 HDVVFLITKYGYIHLYDLETGTCIYMN  296 (494)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEecCceEEEEecccceeeeee
Confidence            889999999999999999999887643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.58  E-value=0.064  Score=51.93  Aligned_cols=224  Identities=12%  Similarity=0.076  Sum_probs=117.2

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC------CCeEEEEcC-CCeEEEE
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD------GTKVFMAGC-DKTVKCW  103 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~-dg~i~vw  103 (356)
                      .|.+.+.+.     .+++.++ ++.+.+++++.+....... ..-...|.|+++.|.      +++++.|.. |++|+|+
T Consensus       515 ~I~~As~n~-----~~vvva~-g~~l~~fel~~~~L~~~~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~  587 (1158)
T 3ei3_A          515 NISVASCNS-----SQVVVAV-GRALYYLQIHPQELRQISH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL  587 (1158)
T ss_dssp             CCCEEEECS-----SEEEEEE-TTEEEEEEEETTEEEEEEE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEE
T ss_pred             EEEEEEeCC-----CEEEEEE-CCEEEEEEeeCCceeeecc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEE
Confidence            455555443     3455554 6788888887532222222 223568999999863      368999987 9999999


Q ss_pred             EcCCCceeeeccc--CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeC--CCCCceEE--EeCCC---eeEEEecCCCeEE
Q psy12911        104 DLASNQSMQVAQH--DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL--RTPQPIMT--INLPE---RCYCADVDYPLAV  174 (356)
Q Consensus       104 d~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~--~~~~~---~~~~~~~~~~~~~  174 (356)
                      ++.+-+.+....-  .....++.+.......+|..|-.||.+.-+.+  .+++....  .....   ....+...+...+
T Consensus       588 sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V  667 (1158)
T 3ei3_A          588 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNV  667 (1158)
T ss_dssp             ETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEE
T ss_pred             ECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeE
Confidence            9987665543222  23455555542234467888999998765554  34543322  22222   2222333333333


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                      .+..+....+|.-++. ......  . -..+..++-...... +..++..+ ++.++|..++....-.+.+++-.     
T Consensus       668 ~a~s~rp~liy~~~~~-l~~s~l--~-~~~v~~~~~F~se~~-~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~-----  736 (1158)
T 3ei3_A          668 FACSDRPTVIYSSNHK-LVFSNV--N-LKEVNYMCPLNSDGY-PDSLALAN-NSTLTIGTIDEIQKLHIRTVPLY-----  736 (1158)
T ss_dssp             EEESSSCEEEEESSSS-EEEEEB--S-SSCCCEEEEECCSSS-TTEEEEEC-SSCEEEEEECCSSSEEEEEEECS-----
T ss_pred             EEECCCCEEEEEcCCc-eEEecc--C-hHHhceEeccCcccC-CCcEEEEc-CCceEEEEecccCCeeEEEEeCC-----
Confidence            3444444444443322 111111  1 112333333322111 33455444 45699988864421112222221     


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEE
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATV  279 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~  279 (356)
                             +.+..++++|+.+.++.+
T Consensus       737 -------~Tprri~y~~~~~~~~v~  754 (1158)
T 3ei3_A          737 -------ESPRKICYQEVSQCFGVL  754 (1158)
T ss_dssp             -------SEEEEEEEEGGGTEEEEE
T ss_pred             -------CCceEEEEcCCCCEEEEE
Confidence                   167888999887665543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.51  E-value=0.0015  Score=59.80  Aligned_cols=197  Identities=7%  Similarity=-0.048  Sum_probs=107.2

Q ss_pred             CCeeEEEecCCCCCceEEEEE-eCCCeEEEEeccCCC--ceeeeeeccCCcceeEEEEccCCCeEE-EEcCCCeEEEEEc
Q psy12911         30 DSISCMAFSPSTLPQYFLIAG-SWDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKVF-MAGCDKTVKCWDL  105 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~  105 (356)
                      ..+..++|.+.+   ..|+.+ ...+.|+.+++....  ......+.........|++.+.+..|+ +-...+.|.++++
T Consensus       406 ~~p~gla~d~~~---~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~  482 (699)
T 1n7d_A          406 RNVVALDTEVAS---NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  482 (699)
T ss_dssp             TTCCCCEEETTT---TEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred             cceEEEcccccc---CeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence            345688998866   455544 456789998886410  111112211223456788876444444 4455788999998


Q ss_pred             CCCceeeecc-cCCCeeEEEEEeCCCCCeEEEEEC-C-CeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEE-ec
Q psy12911        106 ASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSW-D-KTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVG-TA  178 (356)
Q Consensus       106 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~  178 (356)
                      .......+.. .......|++.  |.+..|+.+.. . +.|..+++........+..   ....+++++.+..|+++ ..
T Consensus       483 dg~~~~~l~~~~~~~P~giavD--p~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~  560 (699)
T 1n7d_A          483 KGVKRKTLFREQGSKPRAIVVD--PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  560 (699)
T ss_dssp             SSCCEEEECCCSSCCCCCEECC--SSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT
T ss_pred             CCCceEEEEeCCCCCcceEEEc--cCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC
Confidence            8665444332 23456788888  65444444432 2 6788887654322221111   22457777776666555 45


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN  236 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  236 (356)
                      .+.|..+++....................+++..+     .++++....+.|..++..
T Consensus       561 ~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-----~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          561 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-----KVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-----EEEEECSTTTCEEEEETT
T ss_pred             CCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-----EEEEEeCCCCeEEEEEcc
Confidence            67899999876432221111111122344454333     345555566777777653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.47  E-value=0.034  Score=46.17  Aligned_cols=102  Identities=11%  Similarity=0.027  Sum_probs=61.1

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee---ccCCcceeEEEEccC---CCeEEEEcC----C-
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM---QGMSEPVLDVAWIDD---GTKVFMAGC----D-   97 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~v~~~~~s~~---~~~l~~~~~----d-   97 (356)
                      -..-..++|.|+|   + |+++..+|.|++++. . +...+..+   .........|+++|+   +..|+.+..    + 
T Consensus        28 l~~P~~ia~~pdG---~-l~V~e~~g~I~~~d~-~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~  101 (354)
T 3a9g_A           28 LEVPWSIAPLGGG---R-YLVTERPGRLVLISP-S-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG  101 (354)
T ss_dssp             CSCEEEEEEEETT---E-EEEEETTTEEEEECS-S-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred             CCCCeEEEEcCCC---e-EEEEeCCCEEEEEeC-C-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence            4456799999998   6 555566799999973 2 22222222   112356889999997   555555443    3 


Q ss_pred             ---CeEEEEEcCCC--ce-----e-e-ec-ccCCCeeEEEEEeCCCCCeEEEEE
Q psy12911         98 ---KTVKCWDLASN--QS-----M-Q-VA-QHDAPVKTCHWIKAPNYTCLMTGS  138 (356)
Q Consensus        98 ---g~i~vwd~~~~--~~-----~-~-~~-~~~~~v~~~~~~~~~~~~~l~~~~  138 (356)
                         ..|..|+....  ..     + . +. ........++|.  ++|.++++.+
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~--pDG~Lyvt~G  153 (354)
T 3a9g_A          102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG--PDGMLYITTG  153 (354)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC--TTSCEEEECC
T ss_pred             CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC--CCCcEEEEEC
Confidence               57788887654  11     1 1 11 111234668888  8887666644

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.43  E-value=0.034  Score=45.36  Aligned_cols=198  Identities=7%  Similarity=-0.044  Sum_probs=114.5

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC--CceeeeeeccCCcceeEEEEccCCCeEE-EEcCCCeEEEEEc
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN--GKTIPKSMQGMSEPVLDVAWIDDGTKVF-MAGCDKTVKCWDL  105 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~  105 (356)
                      -.....++|++.+  +.+.++-..++.|..+++...  +......+...-.....+++.+.+..|+ +-...+.|.+.++
T Consensus        29 ~~~p~g~~~d~~~--~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~  106 (316)
T 1ijq_A           29 LRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (316)
T ss_dssp             CSSEEEEEEETTT--TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEEEeCC--CEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence            4467799999865  145555556789999998651  0111122222224567899987555554 4456789999998


Q ss_pred             CCCceeeec-ccCCCeeEEEEEeCCCCCeEEEEECC--CeEEEEeCCCCCceEEEeC----CCeeEEEecCCCeEEEEe-
Q psy12911        106 ASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWD--KTLKFWDLRTPQPIMTINL----PERCYCADVDYPLAVVGT-  177 (356)
Q Consensus       106 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-  177 (356)
                      .......+. ........+++.  |.+..|+.+...  +.|...++. +.....+..    ....+++++.+..++.+. 
T Consensus       107 ~g~~~~~~~~~~~~~P~~iavd--p~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~  183 (316)
T 1ijq_A          107 KGVKRKTLFRENGSKPRAIVVD--PVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  183 (316)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEE--TTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCCceEEEEECCCCCcceEEeC--CCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEEC
Confidence            765443332 234567899998  755555555443  688888875 443333321    124567777777666655 


Q ss_pred             cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911        178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN  236 (356)
Q Consensus       178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  236 (356)
                      ..+.|..+|+....................+++..     +..+++-...+.|..++..
T Consensus       184 ~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-----~~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          184 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-----DKVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-----TEEEEEETTTTEEEEEETT
T ss_pred             CCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-----CEEEEEECCCCeEEEEeCC
Confidence            45799999997643221111111122345666632     3455555566667666653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.40  E-value=0.032  Score=45.45  Aligned_cols=210  Identities=11%  Similarity=0.083  Sum_probs=102.5

Q ss_pred             eEEEEcCCCeEEEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEEC----C-------CeEEEEeCCCCCceEE
Q psy12911         90 KVFMAGCDKTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSW----D-------KTLKFWDLRTPQPIMT  156 (356)
Q Consensus        90 ~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~----d-------g~i~iwd~~~~~~~~~  156 (356)
                      .++.|+  ..+.+||..+++...  ..............  .++.+++.|+.    +       ..+..||..+.+-...
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   82 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVT--KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM   82 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEEC--TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEE--ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence            344555  579999999887543  11111222233333  67778888873    1       1277889887653221


Q ss_pred             EeCCC--e-eEEEecCCCeEEEEecC--------CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee
Q psy12911        157 INLPE--R-CYCADVDYPLAVVGTAG--------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS  225 (356)
Q Consensus       157 ~~~~~--~-~~~~~~~~~~~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  225 (356)
                      -..+.  . .......+..++.|+.+        ..+.+||+.++.-...... +....-.+++. .+    +..++.|+
T Consensus        83 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~-~~----~~iyv~GG  156 (315)
T 4asc_A           83 PPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL-PYVVYGHTVLS-HM----DLVYVIGG  156 (315)
T ss_dssp             CCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEE-ET----TEEEEECC
T ss_pred             CCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC-CCcccceeEEE-EC----CEEEEEeC
Confidence            11111  1 11222344455555532        5688999887642111111 11111122222 23    45777777


Q ss_pred             c-C-----CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC-----eEEEEEcCcce
Q psy12911        226 V-E-----GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG-----TFSFWDKDART  294 (356)
Q Consensus       226 ~-d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg-----~i~iwd~~~~~  294 (356)
                      . +     ..+.+||........+..+...+.           .-..+.+  ++++++.|+.++     .+.+||+.+.+
T Consensus       157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARS-----------LFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             BCTTSCBCCCEEEEETTTTEEEECCCCSSCCB-----------SCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCCCCcccceEEEEeCCCCeEEECCCCCCchh-----------ceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            6 2     457777776543322221111110           1122222  667777777654     58889987653


Q ss_pred             --ecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        295 --KLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       295 --~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                        .+..+.........+.  -++++++.|+.+
T Consensus       224 W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~  253 (315)
T 4asc_A          224 WAPFEAFPQERSSLSLVS--LVGTLYAIGGFA  253 (315)
T ss_dssp             EEEECCCSSCCBSCEEEE--ETTEEEEEEEEE
T ss_pred             EEECCCCCCcccceeEEE--ECCEEEEECCcc
Confidence              3333322122222222  266777777643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.31  E-value=0.049  Score=44.46  Aligned_cols=196  Identities=9%  Similarity=-0.048  Sum_probs=116.0

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeE-EEEcCCCeEEEEEcCCCc
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV-FMAGCDKTVKCWDLASNQ  109 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~  109 (356)
                      ...+++|.+.+  +.+.++-...+.|..++........ ..+...-.....+++.+.+..| ++-...+.|.++++....
T Consensus        36 ~~~~ld~d~~~--~~lyw~D~~~~~I~r~~~~g~~~~~-~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~  112 (318)
T 3sov_A           36 DAAAVDFVFSH--GLIYWSDVSEEAIKRTEFNKTESVQ-NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEEEEGGG--TEEEEEETTTTEEEEEETTSSSCCC-EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ccEEEEEEeCC--CEEEEEECCCCcEEEEEccCCCceE-EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence            56689999864  2555665667889999987632111 1222222456788998755444 454557899999987654


Q ss_pred             eeeec-ccCCCeeEEEEEeCCCCCeEEEEE--CCCeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEEe-cCCeE
Q psy12911        110 SMQVA-QHDAPVKTCHWIKAPNYTCLMTGS--WDKTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVGT-AGRGI  182 (356)
Q Consensus       110 ~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~d~~i  182 (356)
                      ...+. ........+++.  |.+..|+.+.  ..+.|...++........+..   ....+++++.+..++.+. ..+.|
T Consensus       113 ~~~l~~~~~~~P~giavd--p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I  190 (318)
T 3sov_A          113 RKVLFWQELDQPRAIALD--PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI  190 (318)
T ss_dssp             CEEEECSSCSSEEEEEEE--GGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEEeCCCCCccEEEEe--CCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEE
Confidence            43332 444567899998  6555555554  357888888754332222222   124677777677666654 46889


Q ss_pred             EEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911        183 VLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA  238 (356)
Q Consensus       183 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  238 (356)
                      ..+|+.........  .........+++..     +..+.+-...+.|..++...+
T Consensus       191 ~~~d~dG~~~~~~~--~~~~~~P~glav~~-----~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          191 HKSNLDGTNRQAVV--KGSLPHPFALTLFE-----DILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             EEEETTSCSCEEEE--CSCCSCEEEEEEET-----TEEEEEETTTTEEEEEETTTC
T ss_pred             EEEcCCCCceEEEe--cCCCCCceEEEEeC-----CEEEEEecCCCeEEEEECCCC
Confidence            99998764322111  11223445666643     244555555666776666433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.27  E-value=0.058  Score=44.41  Aligned_cols=115  Identities=12%  Similarity=0.053  Sum_probs=69.0

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee----ccCCcceeEEEEccC---CCeEE
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM----QGMSEPVLDVAWIDD---GTKVF   92 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~----~~~~~~v~~~~~s~~---~~~l~   92 (356)
                      ..+.++...-..-..|+|.|+|   .++++--..|.|++++...+....+..+    .........|+++|+   +..|+
T Consensus        22 ~~~~~va~gL~~P~~ia~~pdG---~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lY   98 (347)
T 3das_A           22 KVLRTVATGLNSPWGLAPLPGG---DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVY   98 (347)
T ss_dssp             EEEEEEECCCSSEEEEEECTTS---CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEE
T ss_pred             ceeEEeecCCCCceEEEEcCCC---cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEE
Confidence            3455555555677899999999   7666665589999998654222222222    223567889999995   34554


Q ss_pred             EE---cCCCeEEEEEcCCCc--------e--e-e-ec-ccCCCeeEEEEEeCCCCCeEEEEEC
Q psy12911         93 MA---GCDKTVKCWDLASNQ--------S--M-Q-VA-QHDAPVKTCHWIKAPNYTCLMTGSW  139 (356)
Q Consensus        93 ~~---~~dg~i~vwd~~~~~--------~--~-~-~~-~~~~~v~~~~~~~~~~~~~l~~~~~  139 (356)
                      ..   ..++.|.-|.+..+.        .  + . +. .....-..|.|.  +||.++++.+.
T Consensus        99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg--pDG~Lyvt~Gd  159 (347)
T 3das_A           99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG--PDKMLYAGTGE  159 (347)
T ss_dssp             EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC--TTSCEEEECBC
T ss_pred             EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC--CCCCEEEEECC
Confidence            43   235667777665421        1  1 1 11 112234568888  88887777654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.01  Score=48.57  Aligned_cols=139  Identities=12%  Similarity=0.098  Sum_probs=81.1

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccC-CcceeEEEE--ccCCCeEEEE--cCCCeEEEEEcCCCceeeecc----
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM-SEPVLDVAW--IDDGTKVFMA--GCDKTVKCWDLASNQSMQVAQ----  115 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~--s~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~----  115 (356)
                      .++++++.||.|.-+|.++ |+.. -.+... ..++....-  .+.+..++.+  +.||.|..++..+|.......    
T Consensus        11 ~~V~v~t~dG~l~Ald~~t-G~~~-W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRN-GHII-WSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTT-TEEE-EEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCC-CcEE-EEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            6889999999999999887 3333 233221 122222110  0112234433  579999999988875432111    


Q ss_pred             -cCCCeeEEEEEeCC-------CCCeEEEEECCCeEEEEeCCCCCceEEEeCCCee--------EEEe-------cCCCe
Q psy12911        116 -HDAPVKTCHWIKAP-------NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERC--------YCAD-------VDYPL  172 (356)
Q Consensus       116 -~~~~v~~~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~-------~~~~~  172 (356)
                       ...++.. .-.|--       .+..+++|+.+|.+...|+++|+.+..+......        .|..       ..+..
T Consensus        89 v~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~  167 (339)
T 2be1_A           89 VSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM  167 (339)
T ss_dssp             HTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred             eecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence             2222221 100001       5668899999999999999999999998855321        1111       12356


Q ss_pred             EEEEecCCeEEEEe
Q psy12911        173 AVVGTAGRGIVLYQ  186 (356)
Q Consensus       173 ~~~~~~d~~i~i~d  186 (356)
                      ++.+..+..+.+.+
T Consensus       168 v~ig~~~y~v~~~~  181 (339)
T 2be1_A          168 IVIGKTIFELGIHS  181 (339)
T ss_dssp             EEEEEEEEECEECC
T ss_pred             EEEecceEEEEEEC
Confidence            77777777777766

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.19  E-value=0.0053  Score=50.29  Aligned_cols=196  Identities=8%  Similarity=-0.009  Sum_probs=103.5

Q ss_pred             CeEEEEcCCCeEEEEEcCCCceeeecccC--CCeeEEEEEeCC-CCCeEEEE-ECCCeEEEEeCCCCCceEEEeCCCee-
Q psy12911         89 TKVFMAGCDKTVKCWDLASNQSMQVAQHD--APVKTCHWIKAP-NYTCLMTG-SWDKTLKFWDLRTPQPIMTINLPERC-  163 (356)
Q Consensus        89 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~-  163 (356)
                      ..++.++.||.|.-+|..+|+.+......  .++....-...+ ++..++.. +.||.|..+|..+|.....+..+..+ 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            37888899999999999999887643322  233221110001 23334343 58999999999888555444432211 


Q ss_pred             ---EEEe----c-------CCCeEEEEecCCeEEEEeCCCCccccccccCccccc-----ceEEEee---cCCCCCCCeE
Q psy12911        164 ---YCAD----V-------DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQ-----NRCIAIF---RDKKKQPAGY  221 (356)
Q Consensus       164 ---~~~~----~-------~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-----i~~~~~~---~~~~~~~~~~  221 (356)
                         +...    .       .+..+++++.++.+...|+++++.............     ..|....   .+  ..+..+
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d--~~~~~v  168 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQ--ECENMI  168 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------------CCEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccc--cCCCeE
Confidence               1111    1       456789999999999999999876554433211110     0111110   00  013457


Q ss_pred             EEeecCCeEEEEEeCCCCCCCcceeeee--cCCCCCCCcccccce-EEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC
Q psy12911        222 GLGSVEGRVAIQYVNPANPKDNFTFKCH--RSNGGAGGVQDIYAV-NGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK  297 (356)
Q Consensus       222 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i-~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~  297 (356)
                      +.+..+..+.+.+ +.+  + .+.+...  .......      .+ ..-..+.|+.++ .++.||.|.-+|..+|+.+.
T Consensus       169 ~ig~~~y~v~~~~-~sG--~-~W~~~~s~~~~~~~~~------~~~~~~~~s~Dg~~~-~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          169 VIGKTIFELGIHS-YDG--A-SYNVTYSTWQQNVLDV------PLALQNTFSKDGMCI-APFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEECEECC-TTS--C-CCCCEEEEEECCTTTH------HHHTTCSSCSSSCCE-EEETTTEEEEECSTTCCEEE
T ss_pred             EEecceEEEEEEC-CCC--C-eEEEeccccccccccc------ccccccccccCCcEE-EECCCCEEEEEECCCCcEEE
Confidence            7777766666655 222  2 3322211  1100000      00 000012346654 46788888888888887765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.19  E-value=0.035  Score=45.25  Aligned_cols=210  Identities=15%  Similarity=0.106  Sum_probs=98.3

Q ss_pred             eEEEEcCCCeEEEEEcCCCceeee--cccCCCeeEEEEEeCCCCCeEEEEEC----CC-------eEEEEeCCCCCceEE
Q psy12911         90 KVFMAGCDKTVKCWDLASNQSMQV--AQHDAPVKTCHWIKAPNYTCLMTGSW----DK-------TLKFWDLRTPQPIMT  156 (356)
Q Consensus        90 ~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~  156 (356)
                      .++.|+.  .+..||..+++....  .............  .++.+++.|+.    ++       .+..||..+.+-...
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   93 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVT--QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL   93 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEEC--SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEE--ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence            3444443  488999988875441  1111122222233  66777888773    12       277888876643221


Q ss_pred             --EeCCCe-eEEEecCCCeEEEEecC-------CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec
Q psy12911        157 --INLPER-CYCADVDYPLAVVGTAG-------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV  226 (356)
Q Consensus       157 --~~~~~~-~~~~~~~~~~~~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  226 (356)
                        +..+.. .......+...+.|+.+       ..+.+||+.+..-...... +....-.+++. .+    +.+++.|+.
T Consensus        94 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~----~~iyv~GG~  167 (318)
T 2woz_A           94 PPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL-PIKVYGHNVIS-HN----GMIYCLGGK  167 (318)
T ss_dssp             SCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC-SSCEESCEEEE-ET----TEEEEECCE
T ss_pred             CCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC-CCcccccEEEE-EC----CEEEEEcCC
Confidence              111111 11222344555566543       3578888887642211111 11111112222 23    456777764


Q ss_pred             ------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcce-
Q psy12911        227 ------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDART-  294 (356)
Q Consensus       227 ------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~~-  294 (356)
                            ...+.+||........+..+...+.           ....+.+  ++++++.|+.+     ..+.+||+.+.+ 
T Consensus       168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  234 (318)
T 2woz_A          168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS-----------MFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW  234 (318)
T ss_dssp             ESSSCBCCCEEEEETTTTEEEEECCCSSCCB-----------SCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred             CCCCCccceEEEEcCCCCEEEECCCCCCCcc-----------cceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence                  2347778776543222211111110           1122222  56777777643     357789987653 


Q ss_pred             -ecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        295 -KLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       295 -~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                       .+..+.........+.  .++++++.|+.+
T Consensus       235 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~  263 (318)
T 2woz_A          235 EVMTEFPQERSSISLVS--LAGSLYAIGGFA  263 (318)
T ss_dssp             EECCCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred             EECCCCCCcccceEEEE--ECCEEEEECCee
Confidence             3333322222212222  356777777643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.18  E-value=0.011  Score=49.13  Aligned_cols=90  Identities=10%  Similarity=-0.002  Sum_probs=46.2

Q ss_pred             CCCeEEEEcC-CCeEEEEEcCC--CceeeecccC--CC-eeEEEEEeCCCCCeEEEEEC-C---------CeEEEEeCCC
Q psy12911         87 DGTKVFMAGC-DKTVKCWDLAS--NQSMQVAQHD--AP-VKTCHWIKAPNYTCLMTGSW-D---------KTLKFWDLRT  150 (356)
Q Consensus        87 ~~~~l~~~~~-dg~i~vwd~~~--~~~~~~~~~~--~~-v~~~~~~~~~~~~~l~~~~~-d---------g~i~iwd~~~  150 (356)
                      +++.++.|+. ...+.++|+.+  .+...+....  .. -.+++.   -++.+++.|+. +         ..+.+||+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF---IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE---ETTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE---ECCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            5656666654 45788899874  4433322211  11 122333   45677777775 2         4688999887


Q ss_pred             CCceEE--Ee-CCC-eeEEEecCCCeEEEEecC
Q psy12911        151 PQPIMT--IN-LPE-RCYCADVDYPLAVVGTAG  179 (356)
Q Consensus       151 ~~~~~~--~~-~~~-~~~~~~~~~~~~~~~~~d  179 (356)
                      .+-...  +. ... ...+....+..++.|+.+
T Consensus        96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             TEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             CcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            642221  11 111 122233555566666644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.09  E-value=0.082  Score=51.48  Aligned_cols=132  Identities=12%  Similarity=0.065  Sum_probs=86.5

Q ss_pred             CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEE
Q psy12911         97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVG  176 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (356)
                      ..+|.|.|+..+..+...  .-..-+.-.+  |..+.++.-. ..++.|+|+.+.+.++++..+..++.+.|-.+..+.-
T Consensus        47 ~~~vvIidl~~~~~~~rr--pi~AdsAIMn--P~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~l  121 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRR--PISADSAIMN--PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL  121 (1630)
T ss_pred             CceEEEEECCCCCCcccc--cccchhhccC--CCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEE
Confidence            447889998876644211  1112233345  7666666554 6889999999999999999999999999988877777


Q ss_pred             ecCCeEEEEeCCCCccccccccCc---ccccceEEEeecCCCCCCCeEEEee-------cCCeEEEEEeCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESP---LKYQNRCIAIFRDKKKQPAGYGLGS-------VEGRVAIQYVNP  237 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~-------~dg~i~i~~~~~  237 (356)
                      -.+..|.-|++.+...+.+.....   ...+|.....+++    ..+++..+       -.|.+.+|..+.
T Consensus       122 VT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~----~kW~~l~gi~~~~~~v~G~mQLyS~er  188 (1630)
T 1xi4_A          122 VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK----QKWLLLTGISAQQNRVVGAMQLYSVDR  188 (1630)
T ss_pred             EcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCC----CCeEEEEeeccCCCcccceeeeeeccc
Confidence            778899999997654444433321   2355666666666    33433222       346666666543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.07  E-value=0.16  Score=45.80  Aligned_cols=273  Identities=7%  Similarity=-0.061  Sum_probs=143.2

Q ss_pred             CCCeeEEEecCCCCCceEEEEEe--CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-CCCeEEEEEc
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGS--WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWDL  105 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~  105 (356)
                      -..-..+++.|..   ..|+...  ..+.|...+++.....   .+...-.....|++.++++.|+.+. ..+.|...|+
T Consensus       122 l~~P~~iavdp~~---G~lY~tD~g~~~~I~r~~~dG~~~~---~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          122 LDSPRALALDPAE---GFMYWTEWGGKPKIDRAAMDGSERT---TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             CCCEEEEEEETTT---TEEEEEECSSSCEEEEEETTSCSCE---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCcccEEEccCC---CeEEEeCCCCCCEEEEEeCCCCceE---EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            3456789999854   3454444  2467777777653222   2222345678999999877776664 4688999999


Q ss_pred             CCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC----Ce-------------------
Q psy12911        106 ASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP----ER-------------------  162 (356)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~-------------------  162 (356)
                      .......+.........+++.  . +.++++-...+.|...|..+++....+...    ..                   
T Consensus       196 dG~~~~v~~~~l~~P~glav~--~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~n  272 (628)
T 4a0p_A          196 LGLNREVIADDLPHPFGLTQY--Q-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSN  272 (628)
T ss_dssp             TSCSCEEEEECCSCEEEEEEE--T-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTG
T ss_pred             CCCceEEeeccCCCceEEEEE--C-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCC
Confidence            765543333334456678876  5 455555555788999987776544433211    00                   


Q ss_pred             ----eEEEecC-CC----------------------eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCC
Q psy12911        163 ----CYCADVD-YP----------------------LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKK  215 (356)
Q Consensus       163 ----~~~~~~~-~~----------------------~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  215 (356)
                          -+|+... +.                      .++..+....|+-..+..............-..+..+++.+.. 
T Consensus       273 g~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~-  351 (628)
T 4a0p_A          273 GHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLD-  351 (628)
T ss_dssp             GGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTT-
T ss_pred             CCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCC-
Confidence                0111111 10                      0111122333443433322110001111112345677777752 


Q ss_pred             CCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCE-EEEEcCCCeEEEEEcCcce
Q psy12911        216 KQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGT-LATVGSEGTFSFWDKDART  294 (356)
Q Consensus       216 ~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~-l~s~~~dg~i~iwd~~~~~  294 (356)
                        +..+.+=...+.|+.++.+...  ....+.....     +.........+++...++. ..+-+..+.|.+.++. |+
T Consensus       352 --~~iy~sD~~~~~I~r~~~~g~~--~~~v~~~~~~-----~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~  421 (628)
T 4a0p_A          352 --KQLYWIDSRQNMIRKAQEDGSQ--GFTVVVSSVP-----SQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GR  421 (628)
T ss_dssp             --TEEEEEETTTTEEEEEETTSCS--CEEEEC-------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SC
T ss_pred             --CeEEEEecCcceEEEEEcCCCC--ceEEEEcccc-----cccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CC
Confidence              3334444456677777665432  1111111000     0000115789999988654 4566678899999986 44


Q ss_pred             ecCCC-CCCccceEEEEECCCCCEEEEE
Q psy12911        295 KLKPS-EAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       295 ~~~~~-~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                      ....+ .......+++++.|...+|..+
T Consensus       422 ~~~~l~~~~l~~Pr~iavdp~~g~ly~t  449 (628)
T 4a0p_A          422 SVGVVLKGEQDRPRAVVVNPEKGYMYFT  449 (628)
T ss_dssp             EEEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred             eEEEEEeCCCCceeeEEEecCCCeEEEe
Confidence            33322 2234567899999954444443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.06  E-value=0.11  Score=43.66  Aligned_cols=102  Identities=14%  Similarity=0.198  Sum_probs=69.4

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccC----CcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce----------
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM----SEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS----------  110 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----------  110 (356)
                      ..++.+- ++.||.-++....  ..+.+...    -..|..+..+|+|++||..+ +..|.|-.+..+..          
T Consensus        33 t~i~~a~-~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           33 TRIVFIQ-DNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TEEEEEE-TTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CEEEEEE-CCEEEEEECCCCC--cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            5555554 4688888877522  22333322    23678899999999999886 56899988873220          


Q ss_pred             e---ee-cc-----cCCCeeEEEEEeC-CCCCeEEEEECCCeEEEEeCCC
Q psy12911        111 M---QV-AQ-----HDAPVKTCHWIKA-PNYTCLMTGSWDKTLKFWDLRT  150 (356)
Q Consensus       111 ~---~~-~~-----~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~  150 (356)
                      +   .+ .+     ...+|..+.|+|. ..+..|++-..|+.|++||+..
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            0   11 11     2577999999942 2456899999999999999986

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.02  E-value=0.085  Score=48.26  Aligned_cols=227  Identities=12%  Similarity=0.053  Sum_probs=111.4

Q ss_pred             cCCCeEEEEcCC----CeEEEEEcCCCceeeec-c------cCC-CeeEEEEEeCC-CCCeEEEEECCC------eEEEE
Q psy12911         86 DDGTKVFMAGCD----KTVKCWDLASNQSMQVA-Q------HDA-PVKTCHWIKAP-NYTCLMTGSWDK------TLKFW  146 (356)
Q Consensus        86 ~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~-~------~~~-~v~~~~~~~~~-~~~~l~~~~~dg------~i~iw  146 (356)
                      .++..++.|+.+    ..+.+||..+++..... .      ... .-.+++..  . ++.+++.|+.++      .+.+|
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~--~~~~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI--SRNNQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE--TTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE--ccCCEEEEEcCCCCCCCccccEEEE
Confidence            456677777653    46889999887655433 1      111 11233332  4 788888887543      57889


Q ss_pred             eCCCCCceEE--EeCCCe-eEEEe-cCCCeEEEEecCC--eEEEEeCCCCcccccccc--Cc-ccccceEEEeecCCCCC
Q psy12911        147 DLRTPQPIMT--INLPER-CYCAD-VDYPLAVVGTAGR--GIVLYQLEGKPQEFKKTE--SP-LKYQNRCIAIFRDKKKQ  217 (356)
Q Consensus       147 d~~~~~~~~~--~~~~~~-~~~~~-~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~--~~-~~~~i~~~~~~~~~~~~  217 (356)
                      |+.+.+-...  +..+.. ..+.. ..+..++.|+.++  .+.+||..+..-......  .+ ......++.+....   
T Consensus       474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~---  550 (695)
T 2zwa_A          474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS---  550 (695)
T ss_dssp             ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT---
T ss_pred             eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC---
Confidence            9887542221  111111 12222 2556666666544  789999987642211110  01 11122224433321   


Q ss_pred             CCeEEEeec--C-----CeEEEEEeCCCCCCCc--ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC------
Q psy12911        218 PAGYGLGSV--E-----GRVAIQYVNPANPKDN--FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE------  282 (356)
Q Consensus       218 ~~~~~~~~~--d-----g~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d------  282 (356)
                      +..++.|+.  +     ..+.+||+........  ++........  ..     .-.+++...++++++.|+.+      
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~--~R-----~~~~~~~~~~~~iyv~GG~~~~~~~~  623 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF--QR-----YGSQIKYITPRKLLIVGGTSPSGLFD  623 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG--CC-----BSCEEEEEETTEEEEECCBCSSCCCC
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC--Cc-----ccceEEEeCCCEEEEECCccCCCCCC
Confidence            346777765  2     4578888876642001  1111110000  00     11123333337777777743      


Q ss_pred             --CeEEEEEcCcceecCCCCCCcc--------ce-EEEEECCCCCEEEEEeccC
Q psy12911        283 --GTFSFWDKDARTKLKPSEAMDM--------SI-STCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       283 --g~i~iwd~~~~~~~~~~~~~~~--------~v-~~~~~s~~~~~l~~~s~~d  325 (356)
                        ..|.+||+.+.+-. .+.....        .+ .++....+|++++.|++..
T Consensus       624 ~~~~v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~  676 (695)
T 2zwa_A          624 RTNSIISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGAT  676 (695)
T ss_dssp             TTTSEEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEEE
T ss_pred             CCCeEEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCCcc
Confidence              45999998876432 1110000        00 2334446668888887644

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.88  E-value=0.14  Score=42.25  Aligned_cols=59  Identities=17%  Similarity=0.219  Sum_probs=41.7

Q ss_pred             ceEEEEEeCCCCEEEEE-cCCCeEEEEEcCc-cee--cCCCCCCccceEEEEECC-CCCEEEEEe
Q psy12911        263 AVNGIVFHPVHGTLATV-GSEGTFSFWDKDA-RTK--LKPSEAMDMSISTCALNH-NGQIFAYAV  322 (356)
Q Consensus       263 ~i~~i~~sp~~~~l~s~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~s  322 (356)
                      .-+.++||||++.|+.+ +..+.|..|++.. ++.  ...+ ...+..-.+++.+ +|++.+++.
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence            57899999999776655 4578999999863 321  1122 1245677899999 599888765

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.85  E-value=0.29  Score=45.28  Aligned_cols=257  Identities=12%  Similarity=0.106  Sum_probs=142.4

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee-ccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM-QGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS  107 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  107 (356)
                      ...|+++.-..+|    +|..|..+| +..||-..  ....... ......|.++.-..+| .|..|+.+| +..||..+
T Consensus        21 ~n~V~~I~qD~~G----~lWigT~~G-L~ryDG~~--~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~   91 (758)
T 3ott_A           21 ASVVSCFLQDSEG----LIWIGSNKG-LFSYDGYS--TQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRA   91 (758)
T ss_dssp             CCCEEEEEECTTS----CEEEEESSC-EEEECSSC--EEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTT
T ss_pred             cceEEEEEECCCC----CEEEEECCC-ccccCCCc--eEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCC
Confidence            5689999988887    677777777 55666322  1110000 1123568888777666 566666555 78999887


Q ss_pred             Cceeee-cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe------CCCeeEEEecC-CCeEEEEecC
Q psy12911        108 NQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN------LPERCYCADVD-YPLAVVGTAG  179 (356)
Q Consensus       108 ~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~d  179 (356)
                      .+.... ......|.++..   .++ .|..++.+ -|..+|..+++. ..+.      ....+.++..+ ...+.+++.+
T Consensus        92 ~~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~  165 (758)
T 3ott_A           92 DRYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN  165 (758)
T ss_dssp             TEECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCCEEEEETT
T ss_pred             CEEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC
Confidence            654331 112234666643   444 45556665 688899876543 3331      12234444444 3455556654


Q ss_pred             CeEEEEeCCCCccccccccCc---ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911        180 RGIVLYQLEGKPQEFKKTESP---LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG  256 (356)
Q Consensus       180 ~~i~i~d~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (356)
                       .+..++..+...........   ....|.++....+    +..+.+|+. +-+..++...........+.  ..     
T Consensus       166 -Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~----~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~-----  232 (758)
T 3ott_A          166 -GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTT----RQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NN-----  232 (758)
T ss_dssp             -EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETT----TTEEEEEEE-EEEEEEETTTTEEEEEEEEE--EE-----
T ss_pred             -CHhhCccCCCceEEecCCCccccccceeEEEEEECC----CCEEEEEEC-CCCeEEcCCCCeEEeccCCC--CC-----
Confidence             57788876653211111100   1223666666655    455666664 45666765443211111111  11     


Q ss_pred             CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC-------CCCccceEEEEECCCCCEEEEE
Q psy12911        257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS-------EAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                            .|.++...++|.+.+.. .+ -+.+++..+++.....       .-....|.++....+|.+-+.+
T Consensus       233 ------~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT  296 (758)
T 3ott_A          233 ------SIKSLALDGNGDLLAGT-DN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT  296 (758)
T ss_dssp             ------EEEEEEECTTCCEEEEE-TT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred             ------eEEEEEEcCCCCEEEEe-CC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence                  58888888888766654 44 5788887665321110       0123468899888888766544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.70  E-value=0.064  Score=45.03  Aligned_cols=113  Identities=12%  Similarity=0.016  Sum_probs=78.0

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc----------eeeeeecc------CCcceeEEEEcc---CCCe
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK----------TIPKSMQG------MSEPVLDVAWID---DGTK   90 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~----------~~~~~~~~------~~~~v~~~~~s~---~~~~   90 (356)
                      ..|..+..+|+|   ++||..+ +..|.|-.+..+..          ...+.+.-      ...+|..+.|+|   .+..
T Consensus        66 ~~i~qlvlSpsG---~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~  141 (452)
T 3pbp_A           66 DDTFHVISSTSG---DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSC  141 (452)
T ss_dssp             CTTCEEEECTTS---SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCE
T ss_pred             CceeEEEECCCC---CEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCe
Confidence            368889999999   9999886 56899998874211          01112221      256799999999   4568


Q ss_pred             EEEEcCCCeEEEEEcCCCc--eeee---------cccCCCeeEEEEEeCCCCCeEEEEE--CCCeEEEEeC
Q psy12911         91 VFMAGCDKTVKCWDLASNQ--SMQV---------AQHDAPVKTCHWIKAPNYTCLMTGS--WDKTLKFWDL  148 (356)
Q Consensus        91 l~~~~~dg~i~vwd~~~~~--~~~~---------~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~  148 (356)
                      |++-..|++|++||+....  +..+         ......|.+++|.  .++-.|...+  +.|.|+-.-.
T Consensus       142 LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg--~~~lTLYvl~~t~~GDIYAlcP  210 (452)
T 3pbp_A          142 IVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS--KDGLTLYCLNTTEGGDIFAFYP  210 (452)
T ss_dssp             EEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC--TTSSCEEEEECTTSCEEEEESS
T ss_pred             EEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc--CCCcEEEEEecCCCCCEEEECC
Confidence            9999999999999998622  1111         1123678889998  7776666655  7787776543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.68  E-value=0.21  Score=41.38  Aligned_cols=115  Identities=11%  Similarity=0.084  Sum_probs=65.3

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee----ccCCcceeEEEEccC---CCeEEEEcC------
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM----QGMSEPVLDVAWIDD---GTKVFMAGC------   96 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~----~~~~~~v~~~~~s~~---~~~l~~~~~------   96 (356)
                      ..-..|+|.|+|   +.|+++...|.|++++........+..+    .........|+|+|+   +..|+.+..      
T Consensus        18 ~~P~~i~~~pdG---~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           18 DHPWALAFLPDN---HGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SSEEEEEECSTT---CCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CCcEEEEEcCCC---CEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            356799999999   7345556789999998532100111111    112345789999996   455555432      


Q ss_pred             --CCeEEEEEcCCC--ce-----e-e-ec---ccCCCeeEEEEEeCCCCCeEEEEEC-------------CCeEEEEeCC
Q psy12911         97 --DKTVKCWDLASN--QS-----M-Q-VA---QHDAPVKTCHWIKAPNYTCLMTGSW-------------DKTLKFWDLR  149 (356)
Q Consensus        97 --dg~i~vwd~~~~--~~-----~-~-~~---~~~~~v~~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~  149 (356)
                        ...|..|++..+  ..     + . +.   ........++|.  ++|.++++.+.             .|.|.-+|..
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence              235666766533  11     1 1 11   111224679999  89976666543             2467777765

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.64  E-value=0.2  Score=40.47  Aligned_cols=234  Identities=7%  Similarity=0.002  Sum_probs=124.4

Q ss_pred             cCCCCCceEEEEEe--CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC--------------CeEE
Q psy12911         38 SPSTLPQYFLIAGS--WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD--------------KTVK  101 (356)
Q Consensus        38 ~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~i~  101 (356)
                      +.++   ..|+...  .++.|...+.+.  ... ..+..  ..  +--++++|++|+-+...              ..|+
T Consensus        22 ~~~g---~~iy~~n~~d~~~ly~~~~dg--~~~-~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy   91 (302)
T 3s25_A           22 CESD---GEVFFSNTNDNGRLYAMNIDG--SNI-HKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLC   91 (302)
T ss_dssp             EEET---TEEEEEEGGGTTEEEEEETTS--CSC-EEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEE
T ss_pred             EEeC---CEEEEEeCCCCceEEEEcCCC--CCC-EEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEE
Confidence            3455   5555553  245555555443  332 22321  12  34557889988877543              4678


Q ss_pred             EEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEE----CCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEe
Q psy12911        102 CWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGS----WDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGT  177 (356)
Q Consensus       102 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (356)
                      ..++..++...+....    ...|+  ++++.|+-..    .+..|..-++.... ...+..+.. ..+++.+..|+..+
T Consensus        92 ~i~~dg~~~~~l~~~~----~~~~s--~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~-~~~~~~g~~iy~t~  163 (302)
T 3s25_A           92 RIKRNGHGSTVLDPDP----CIYAS--LIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL-FTCNTSDRYFYYNN  163 (302)
T ss_dssp             EEETTSCCCEEEECSC----EEEEE--EETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC-CCSEEETTEEEEEC
T ss_pred             EEeCCCCcceEeecCC----ccEEE--EeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc-eEeeEECCEEEEEe
Confidence            8888877654443222    22566  6777777765    33456666665433 333433222 44577777777665


Q ss_pred             c-CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC--eEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        178 A-GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG--RVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       178 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                      . ...|...++.+...... ..    .. ....+.|+    +..|+-....+  .|..-+++...   ...+..  .   
T Consensus       164 ~g~~~Iy~~~l~g~~~~~l-~~----~~-~~~~~~P~----g~~iy~t~~~~~~~I~~~~ldG~~---~~~Lt~--~---  225 (302)
T 3s25_A          164 PKNGQLYRYDTASQSEALF-YD----CN-CYKPVVLD----DTNVYYMDVNRDNAIVHVNINNPN---PVVLTE--A---  225 (302)
T ss_dssp             TTTCCEEEEETTTTEEEEE-EC----SC-EEEEEEEE----TTEEEEEEGGGTTEEEEECSSSCC---CEECSC--S---
T ss_pred             CCCceEEEEECCCCCEEEE-eC----CC-ccceeeec----CCEEEEEEcCCCcEEEEEECCCCC---eEEEeC--C---
Confidence            5 67888888877643322 11    11 12345577    55666554433  45554554432   222221  1   


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEc--CCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVG--SEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                              .+  ..|+|++.+|.-+.  ..+.|..-++.... .+.+..  +.+.  .+++.+.+|....
T Consensus       226 --------~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~--~~~~--~i~i~~d~Iy~td  280 (302)
T 3s25_A          226 --------NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG-FKELAK--GEFC--NINVTSQYVYFTD  280 (302)
T ss_dssp             --------CE--EEEEEETTEEEEEECSSSCEEEEEETTSCC-CEEEEE--SCEE--EEEECSSEEEEEE
T ss_pred             --------Cc--ceEEECCCEEEEEECCCCcEEEEEECCCCc-cEEeeC--Cccc--eEEEeCCEEEEEE
Confidence                    23  23778888887653  34567777776332 222221  1222  4556777887764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.28  E-value=0.48  Score=40.80  Aligned_cols=118  Identities=8%  Similarity=0.102  Sum_probs=67.3

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeecc------CCcceeEEEEccC--
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQG------MSEPVLDVAWIDD--   87 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~s~~--   87 (356)
                      +..++...+..+ -..-..|+|.|+|   +++++-...+.|++++..++....+..+..      .......|+|+|+  
T Consensus        14 ~~gf~~~~~a~~-l~~P~~~a~~pdG---~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~   89 (454)
T 1cru_A           14 SENFDKKVILSN-LNKPHALLWGPDN---QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFK   89 (454)
T ss_dssp             CTTSCEEEEECC-CSSEEEEEECTTS---CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTT
T ss_pred             CCCeEEEEEECC-CCCceEEEEcCCC---cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcC
Confidence            334444444444 3456799999999   766665433578888765422222222221      2456779999995  


Q ss_pred             -CCeEEEEcC-------------CCeEEEEEcCCC--c-----ee-e-ec-ccCCCeeEEEEEeCCCCCeEEEEEC
Q psy12911         88 -GTKVFMAGC-------------DKTVKCWDLASN--Q-----SM-Q-VA-QHDAPVKTCHWIKAPNYTCLMTGSW  139 (356)
Q Consensus        88 -~~~l~~~~~-------------dg~i~vwd~~~~--~-----~~-~-~~-~~~~~v~~~~~~~~~~~~~l~~~~~  139 (356)
                       +..|+.+..             ...|..++...+  .     .+ . +. ........|+|.  +||.++++.+.
T Consensus        90 ~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~--pDG~Lyv~~Gd  163 (454)
T 1cru_A           90 NNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG--PDQKIYYTIGD  163 (454)
T ss_dssp             TSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC--TTSCEEEEECC
T ss_pred             cCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeEC--CCCeEEEEECC
Confidence             555555432             235666665432  1     11 1 11 122347889999  99988777553

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.24  E-value=0.41  Score=39.66  Aligned_cols=59  Identities=10%  Similarity=0.129  Sum_probs=41.4

Q ss_pred             ceEEEEEeC-------CCCEEEEEcCCCeEEEEEcCcceecCC---CCCCccceEEEEECCCCCEEEEE
Q psy12911        263 AVNGIVFHP-------VHGTLATVGSEGTFSFWDKDARTKLKP---SEAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       263 ~i~~i~~sp-------~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                      ....++|..       +|.++++.-..+.|...+++.++....   +......+.++++.|||.++++.
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            567788864       477888877888888888876543221   22223478999999999977654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.94  E-value=0.33  Score=36.86  Aligned_cols=99  Identities=8%  Similarity=-0.119  Sum_probs=58.9

Q ss_pred             eEEEEEeCCCeEEEEeccCCCcee---eeeeccC--CcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCC
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTI---PKSMQGM--SEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAP  119 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  119 (356)
                      .+|++...| +++.=.........   .....+.  =..+..++|+|+|.+.++  .+|.+.-.+..+.......+....
T Consensus         5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~   81 (236)
T 1tl2_A            5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK   81 (236)
T ss_dssp             CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred             eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence            567777777 65554444321100   0111122  247889999998875555  678777777655433332222223


Q ss_pred             --------eeEEEEEeCCCCCeEEEEECCCeEEEEeCCC
Q psy12911        120 --------VKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT  150 (356)
Q Consensus       120 --------v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  150 (356)
                              -.++.|.  ++|.+.++  .||.|+-++-.+
T Consensus        82 IG~~Gw~~F~a~~fD--~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           82 IGNGGWNQFQFLFFD--PNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             EECSCGGGCSEEEEC--TTSCEEEE--ETTEEEEESCCC
T ss_pred             ecccccccceEEEEC--CCCCEEEe--CCCEEEEeCCCc
Confidence                    3778888  99987777  569998887543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.58  E-value=0.79  Score=37.71  Aligned_cols=35  Identities=14%  Similarity=-0.008  Sum_probs=25.4

Q ss_pred             cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC
Q psy12911        116 HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ  152 (356)
Q Consensus       116 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  152 (356)
                      .-...+.|+|.  |+|.++++--..|.|++++...++
T Consensus        30 gL~~P~~ia~~--pdG~llVter~~G~I~~v~~~~g~   64 (347)
T 3das_A           30 GLNSPWGLAPL--PGGDLLVSSRDEATITRVDAKTGR   64 (347)
T ss_dssp             CCSSEEEEEEC--TTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCCCceEEEEc--CCCcEEEEEecCCEEEEEECCCCc
Confidence            34567889998  999866665448899998765544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.58  E-value=1  Score=38.81  Aligned_cols=52  Identities=10%  Similarity=0.086  Sum_probs=34.8

Q ss_pred             cceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeee---c------ccCCCeeEEEEEeCCC
Q psy12911         77 EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV---A------QHDAPVKTCHWIKAPN  130 (356)
Q Consensus        77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~------~~~~~v~~~~~~~~~~  130 (356)
                      .....|+|.|+|+++++-...+.|++++..+++...+   .      ........|+|+  |+
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~--Pd   87 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFH--PD   87 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEEC--TT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEEC--CC
Confidence            3567999999998777655445788888665543221   1      124567799999  74

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.50  E-value=0.86  Score=37.63  Aligned_cols=162  Identities=9%  Similarity=0.072  Sum_probs=93.5

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEE------------eCCCeEEEEeccCCC-ceeeeeecc-----CCcceeEE
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAG------------SWDNNVRCWEVEPNG-KTIPKSMQG-----MSEPVLDV   82 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~------------~~dg~i~vw~~~~~~-~~~~~~~~~-----~~~~v~~~   82 (356)
                      ..+.+.+-....-.+...|+|   ..++++            ..+|.|.++|.++.. ......+.+     .......+
T Consensus        41 ~C~~i~~~~~G~EDi~~~~~G---~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi  117 (355)
T 3sre_A           41 NCNLVKGIDNGSEDLEILPNG---LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGI  117 (355)
T ss_dssp             CEEECTTCCSCCCEEEECTTS---EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEE
T ss_pred             CCEEeCCCCCCcceeEEcCCC---eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeee
Confidence            344444433345567788887   444443            168999999987422 111122222     23467777


Q ss_pred             EEcc--CCC-eEEEE-cC--CCeEEEEEcCCC--ceeee--ccc--CCCeeEEEEEeCCCCCeEEEEE------------
Q psy12911         83 AWID--DGT-KVFMA-GC--DKTVKCWDLASN--QSMQV--AQH--DAPVKTCHWIKAPNYTCLMTGS------------  138 (356)
Q Consensus        83 ~~s~--~~~-~l~~~-~~--dg~i~vwd~~~~--~~~~~--~~~--~~~v~~~~~~~~~~~~~l~~~~------------  138 (356)
                      .+.+  ++. +|+.+ ..  +.+|.+|++..+  .....  ..+  -...+++.+.  ++|.+.++..            
T Consensus       118 ~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e  195 (355)
T 3sre_A          118 STFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWE  195 (355)
T ss_dssp             EEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHH
T ss_pred             EEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccch
Confidence            7766  454 45444 22  567888877653  22211  111  2357889998  8888777653            


Q ss_pred             -----CCCeEEEEeCCCCCceEEEe--CCCeeEEEecCCCeEEEEe-cCCeEEEEeCCC
Q psy12911        139 -----WDKTLKFWDLRTPQPIMTIN--LPERCYCADVDYPLAVVGT-AGRGIVLYQLEG  189 (356)
Q Consensus       139 -----~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~  189 (356)
                           ..|.|..+|.  ++......  ...+.+++++++..++++. ..+.|..|++..
T Consensus       196 ~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          196 MHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             HHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             hhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence                 1245666665  33222222  2345778888888777664 578999999874

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.43  E-value=1.1  Score=41.01  Aligned_cols=144  Identities=10%  Similarity=0.152  Sum_probs=81.0

Q ss_pred             eEEEEEeCC------CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC--eEEEEEcCCCceeeecc-
Q psy12911         45 YFLIAGSWD------NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK--TVKCWDLASNQSMQVAQ-  115 (356)
Q Consensus        45 ~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~-  115 (356)
                      .+++.|+.+      ..+.+||..++.......+..... -.+++...+++.++.|+.++  .+.+||..+.+...... 
T Consensus       453 ~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~  531 (695)
T 2zwa_A          453 QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK  531 (695)
T ss_dssp             EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS
T ss_pred             EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC
Confidence            777777654      357788887744333322221111 12233323778888887654  79999998876544321 


Q ss_pred             -----cCCCeeEEEEEeCCC-CCeEEEEEC--C-----CeEEEEeCCCCCc-----eEEEeC----C-CeeEEEecC-CC
Q psy12911        116 -----HDAPVKTCHWIKAPN-YTCLMTGSW--D-----KTLKFWDLRTPQP-----IMTINL----P-ERCYCADVD-YP  171 (356)
Q Consensus       116 -----~~~~v~~~~~~~~~~-~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~----~-~~~~~~~~~-~~  171 (356)
                           ......++.+.  .+ +.+++.|+.  +     ..+.+||+.+.+.     -..+..    + ....+.... +.
T Consensus       532 g~~p~~r~~~~a~v~~--~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~  609 (695)
T 2zwa_A          532 DEFFQNSLVSAGLEFD--PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK  609 (695)
T ss_dssp             SGGGGSCCBSCEEEEE--TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred             CCCCCcccceeEEEEe--CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence                 11222334444  44 677777775  2     4589999988872     222211    1 112223334 45


Q ss_pred             eEEEEec--------CCeEEEEeCCCCc
Q psy12911        172 LAVVGTA--------GRGIVLYQLEGKP  191 (356)
Q Consensus       172 ~~~~~~~--------d~~i~i~d~~~~~  191 (356)
                      .++.|+.        ...+.+||+.+..
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            5666653        3568999998764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.07  E-value=1.2  Score=36.77  Aligned_cols=68  Identities=7%  Similarity=0.047  Sum_probs=42.1

Q ss_pred             cceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeee------cccCCCeeEEEEEeCCC---CCeEEEE-ECC-----C
Q psy12911         77 EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV------AQHDAPVKTCHWIKAPN---YTCLMTG-SWD-----K  141 (356)
Q Consensus        77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~------~~~~~~v~~~~~~~~~~---~~~l~~~-~~d-----g  141 (356)
                      .....++|.|+|+++++ ..+|.|.+++  .++...+      .........|+++  |+   +..|+.+ ...     +
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~--pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALH--PRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEEC--TTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEEC--CCCCCCCEEEEEEecCCCCCcc
Confidence            34679999999985554 5669999998  3432211      1224568899998  76   3344433 322     4


Q ss_pred             eEEEEeCC
Q psy12911        142 TLKFWDLR  149 (356)
Q Consensus       142 ~i~iwd~~  149 (356)
                      .|..++..
T Consensus       106 ~v~r~~~~  113 (352)
T 2ism_A          106 QVVRLRHL  113 (352)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEeC
Confidence            56666654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.93  E-value=0.89  Score=34.53  Aligned_cols=131  Identities=8%  Similarity=-0.133  Sum_probs=72.7

Q ss_pred             CCeEEEEcCCCeEEEEEcCCCce------eeeccc--CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc------
Q psy12911         88 GTKVFMAGCDKTVKCWDLASNQS------MQVAQH--DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP------  153 (356)
Q Consensus        88 ~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------  153 (356)
                      ...|+....| +++.=....+..      ....+.  =..+..++|+  |++.+.+.  .+|.+.-.+..+.+.      
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~--P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s   78 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLS--PGGELYGV--LNDKIYKGTPPTHDNDNWMGR   78 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEEC--TTSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEEC--CCccEEEE--eCCeEEEECCCCCCccccccc
Confidence            3456666666 655544444431      112223  2478899999  88886666  678887777655322      


Q ss_pred             eEEEeCC----CeeEEEecCCCeEEEEecCCeEEEEeCCCCcccccccc-----CcccccceEEEeecCCCCCCCeEEEe
Q psy12911        154 IMTINLP----ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE-----SPLKYQNRCIAIFRDKKKQPAGYGLG  224 (356)
Q Consensus       154 ~~~~~~~----~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~  224 (356)
                      -..+-..    -..+.+++++.+.++  .||.|.-++-.+.........     ..--..+..+.+.|+    +.+.++.
T Consensus        79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~----G~Lyav~  152 (236)
T 1tl2_A           79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPN----GYLYAVH  152 (236)
T ss_dssp             CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTT----SCEEEEE
T ss_pred             ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCC----ceEEEEe
Confidence            1222110    134555656655555  669998887633221111000     001145689999999    6666665


Q ss_pred             ecCCeEE
Q psy12911        225 SVEGRVA  231 (356)
Q Consensus       225 ~~dg~i~  231 (356)
                        ++.++
T Consensus       153 --dg~ly  157 (236)
T 1tl2_A          153 --GQQFY  157 (236)
T ss_dssp             --TTEEE
T ss_pred             --CCcEE
Confidence              77754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.73  E-value=2.6  Score=38.96  Aligned_cols=269  Identities=12%  Similarity=0.014  Sum_probs=137.0

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeecc----CCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQG----MSEPVLDVAWIDDGTKVFMAGCDKTVKCWD  104 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  104 (356)
                      ...|.++....++   . |..|+.+ -|..++..+..... .....    ....|.++...+++..|..|.. +-+..+|
T Consensus       145 ~~~i~~i~~d~~g---~-lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~  217 (758)
T 3ott_A          145 NNTIYSIIRTKDN---Q-IYVGTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYF  217 (758)
T ss_dssp             CSCEEEEEECTTC---C-EEEEETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEE
T ss_pred             CCeEEEEEEcCCC---C-EEEEeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEc
Confidence            3467788777776   4 4445554 47777765521111 11111    1234888888777766665654 4588899


Q ss_pred             cCCCceeeecc-cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC--------CCeeEEEecCC-CeEE
Q psy12911        105 LASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL--------PERCYCADVDY-PLAV  174 (356)
Q Consensus       105 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~-~~~~  174 (356)
                      ..+++...... ....|.++...  .++.+ ..|+. +-+.+++..+++.......        ...+.++..+. ..+-
T Consensus       218 ~~~~~~~~~~~l~~~~i~~i~~d--~~g~l-WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW  293 (758)
T 3ott_A          218 PSTGQIKQTEAFHNNSIKSLALD--GNGDL-LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW  293 (758)
T ss_dssp             TTTTEEEEEEEEEEEEEEEEEEC--TTCCE-EEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE
T ss_pred             CCCCeEEeccCCCCCeEEEEEEc--CCCCE-EEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE
Confidence            88776543221 23357777765  66654 44554 4588898776554322111        11244554443 3566


Q ss_pred             EEecCCeEEEEeCCCCcccccc---ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKK---TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS  251 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  251 (356)
                      +|+..| +.++.....-.....   ........|.++....+    + .+.+|+.+| +..++...........+.....
T Consensus       294 iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~----g-~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~  366 (758)
T 3ott_A          294 LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSK----G-FYWFGGANG-LIRFTDPAGERHDAIWYRMGDK  366 (758)
T ss_dssp             EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTT----C-CEEEEETTE-EEEESCTTSSCCCCEEECTTCS
T ss_pred             EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCC----C-CEEEeeCCc-ceeecccccccceeEEeccCCc
Confidence            666666 544433221110000   00111234666665544    3 455666554 4444433211111111110000


Q ss_pred             CCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC--CC----CccceEEEEECCCCCEEEEE
Q psy12911        252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS--EA----MDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~----~~~~v~~~~~s~~~~~l~~~  321 (356)
                         .... ....|.++.-..+|++-+..  ++-|..||..+++.....  ..    ....|.++.-.++|++.+.+
T Consensus       367 ---~~~l-~~~~v~~i~~d~~g~lWigt--~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT  436 (758)
T 3ott_A          367 ---TYPL-SHNRIRHIYEDKEQQLWIAT--DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIST  436 (758)
T ss_dssp             ---SSCC-SCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEE
T ss_pred             ---CCCC-CCCceEEEEECCCCCEEEEe--CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEE
Confidence               0000 01158888888888765543  346889998876542211  10    23468888888888776654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.60  E-value=3.7  Score=40.61  Aligned_cols=195  Identities=14%  Similarity=0.103  Sum_probs=108.4

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccC----CcceeEEEEccCCCeEEEEc-------CCCe
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM----SEPVLDVAWIDDGTKVFMAG-------CDKT   99 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~-------~dg~   99 (356)
                      .|.-=.|-.+    +.|+-.+ +..|.-|++.. ...+.+.+..|    ...|..-.-+++.++++..|       -.|.
T Consensus       107 ~VvfWkWis~----~~l~lVT-~~aVyHW~~~~-~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~  180 (1630)
T 1xi4_A          107 DVTFWKWISL----NTVALVT-DNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA  180 (1630)
T ss_pred             CceEEEecCC----CeeEEEc-CCeEEEeccCC-CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccce
Confidence            3444455444    3444444 45899999965 33444445444    45677777788888776443       2588


Q ss_pred             EEEEEcCCCceeeecccCCCeeEEEEEeCCC-CCeEEEEEC---CCeEEEEeCCCC---Cc-----eEEEeCCC------
Q psy12911        100 VKCWDLASNQSMQVAQHDAPVKTCHWIKAPN-YTCLMTGSW---DKTLKFWDLRTP---QP-----IMTINLPE------  161 (356)
Q Consensus       100 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~---dg~i~iwd~~~~---~~-----~~~~~~~~------  161 (356)
                      +.+|..+.+....+.+|......+...-.+. ..+++.+..   .+.+.|-++...   ..     ...+..+.      
T Consensus       181 mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Df  260 (1630)
T 1xi4_A          181 MQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF  260 (1630)
T ss_pred             eeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCc
Confidence            9999998776665667766554444421111 122222222   268999888543   11     11111111      


Q ss_pred             -eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        162 -RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       162 -~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                       -.+.++.....++..+.-|.|++||+.++.........  ...|-..+....    ...++.....|.|.-..++.
T Consensus       261 pv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris--~~~iF~~~~~~~----~~g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEA----TAGIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             ceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc--CCceEEeccCCC----CCceEEEcCCceEEEEEEcc
Confidence             13445555678899999999999999998654433221  122222222222    23455555666665555543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.18  E-value=1.8  Score=34.84  Aligned_cols=176  Identities=7%  Similarity=-0.032  Sum_probs=96.7

Q ss_pred             EEecCCCCCceEEEEEeCC--------------CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc----C
Q psy12911         35 MAFSPSTLPQYFLIAGSWD--------------NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG----C   96 (356)
Q Consensus        35 ~~~~~~~~~~~~l~~~~~d--------------g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~   96 (356)
                      --+++++   .+|+-....              ..|+..+++.....   .+..  ..  +..|+++++.|+-..    .
T Consensus        58 ~~i~~~g---~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~---~l~~--~~--~~~~s~~g~~Iy~~~~~~~~  127 (302)
T 3s25_A           58 MYINADK---NYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST---VLDP--DP--CIYASLIGNYIYYLHYDTQT  127 (302)
T ss_dssp             EEEEECS---SEEEEEEECC------CCSSCCSEEEEEEETTSCCCE---EEEC--SC--EEEEEEETTEEEEEEESSSS
T ss_pred             eeEEEcC---CEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce---Eeec--CC--ccEEEEeCCEEEEEeecCCC
Confidence            4467888   777766543              35666666553222   2221  11  236778888888765    3


Q ss_pred             CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEEC-CCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEE
Q psy12911         97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW-DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVV  175 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (356)
                      ...|...++......++..+..    ..++  ++++.|+-.+. ...|..-++..+.....+.. .....+.+.+..++-
T Consensus       128 ~~~Iy~~~~dGs~~~~lt~~~~----~~~~--~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~-~~~~~~~P~g~~iy~  200 (302)
T 3s25_A          128 ATSLYRIRIDGEEKKKIKNHYL----FTCN--TSDRYFYYNNPKNGQLYRYDTASQSEALFYDC-NCYKPVVLDDTNVYY  200 (302)
T ss_dssp             CEEEEEEETTSCCCEEEESSCC----CCSE--EETTEEEEECTTTCCEEEEETTTTEEEEEECS-CEEEEEEEETTEEEE
T ss_pred             CceEEEEECCCCCeEEEeCCCc----eEee--EECCEEEEEeCCCceEEEEECCCCCEEEEeCC-CccceeeecCCEEEE
Confidence            4566666777655555544433    3345  56667765554 56788888766544333332 222334567777766


Q ss_pred             EecC--CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee--cCCeEEEEEeCCC
Q psy12911        176 GTAG--RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS--VEGRVAIQYVNPA  238 (356)
Q Consensus       176 ~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~  238 (356)
                      ....  ..|..-++.+.......     ...+  ..+.|+    +..|..+.  ..+.|..-+++..
T Consensus       201 t~~~~~~~I~~~~ldG~~~~~Lt-----~~~~--~~~~~~----g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          201 MDVNRDNAIVHVNINNPNPVVLT-----EANI--EHYNVY----GSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             EEGGGTTEEEEECSSSCCCEECS-----CSCE--EEEEEE----TTEEEEEECSSSCEEEEEETTSC
T ss_pred             EEcCCCcEEEEEECCCCCeEEEe-----CCCc--ceEEEC----CCEEEEEECCCCcEEEEEECCCC
Confidence            5543  46777777665422211     1112  336676    55665543  2355666566543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.99  E-value=2.2  Score=37.43  Aligned_cols=98  Identities=10%  Similarity=-0.016  Sum_probs=65.2

Q ss_pred             cceeEEEEccCCCeEEEEcC-CCeEEEEEcCCC------ce-------eeecccCCCeeEEEEEeCCCCCeEEEEECCCe
Q psy12911         77 EPVLDVAWIDDGTKVFMAGC-DKTVKCWDLASN------QS-------MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKT  142 (356)
Q Consensus        77 ~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~------~~-------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~  142 (356)
                      .....+.++|||++++.++. +.++.++|++.-      +.       .....-.-.....+|.  ++|....+..-|..
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd--~~G~aYTtlfidSq  400 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFD--GRGNAYTTLFIDSQ  400 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEEC--SSSEEEEEETTTTE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEEC--CCCceEeeeeecce
Confidence            34567889999999888766 889999998742      11       1112233456778898  88866666778999


Q ss_pred             EEEEeCCCC----------CceEEEeCCCeeEEE--------ecCCCeEEEE
Q psy12911        143 LKFWDLRTP----------QPIMTINLPERCYCA--------DVDYPLAVVG  176 (356)
Q Consensus       143 i~iwd~~~~----------~~~~~~~~~~~~~~~--------~~~~~~~~~~  176 (356)
                      |.-|++...          ..+..+..+-+.-..        ..++.+|++.
T Consensus       401 vvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l  452 (638)
T 3sbq_A          401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL  452 (638)
T ss_dssp             EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred             EEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence            999998653          455666655543322        3344566654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.58  E-value=6.8  Score=34.51  Aligned_cols=129  Identities=5%  Similarity=-0.040  Sum_probs=76.7

Q ss_pred             eEEEEeCCC----CccccccccCcccccceEEEeecCCCCCCCeEEEe-ecCCeEEEEEeCCCC------C-CCcceeee
Q psy12911        181 GIVLYQLEG----KPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG-SVEGRVAIQYVNPAN------P-KDNFTFKC  248 (356)
Q Consensus       181 ~i~i~d~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~------~-~~~~~~~~  248 (356)
                      .+.+.|.+.    .......  .+.......+.++|+    +.+++++ -.+.++.+++++...      . .....+.+
T Consensus       299 gv~ViD~~~~~~~~~~~~~~--iP~pksPHGv~vsPD----Gkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a  372 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRY--VPVPKNPHGCNTSSD----GKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG  372 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEE--EEESSSCCCEEECTT----SCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE
T ss_pred             CeeEEccccccccCCceEEE--EeCCCCCcceeeCCC----CCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe
Confidence            467777765    2111111  134456678889999    5665554 468899999986310      0 11112222


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc----------eecCCCCCCccceEEE-----EECC
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR----------TKLKPSEAMDMSISTC-----ALNH  313 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~-----~~s~  313 (356)
                      ....+        ..-...+|.++|.-..+---|..|.-|++...          ..+.++..|-.+-...     .-.|
T Consensus       373 e~e~G--------lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~  444 (638)
T 3sbq_A          373 EPELG--------LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEA  444 (638)
T ss_dssp             CCBCC--------SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred             eccCC--------CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCC
Confidence            21111        14678899999966677778999999998753          2333444443322111     2368


Q ss_pred             CCCEEEEEec
Q psy12911        314 NGQIFAYAVS  323 (356)
Q Consensus       314 ~~~~l~~~s~  323 (356)
                      ||++|++...
T Consensus       445 dGk~lv~lnK  454 (638)
T 3sbq_A          445 DGKWLVALSK  454 (638)
T ss_dssp             CSCEEEEEES
T ss_pred             CccEEEEecc
Confidence            9999999875

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.44  E-value=5.3  Score=32.96  Aligned_cols=103  Identities=16%  Similarity=0.185  Sum_probs=55.2

Q ss_pred             CCCeeEEEecCC---CCCceEEEEEeC---C----CeEEEEeccCCC------ceeeeeecc-CCcceeEEEEccCCCeE
Q psy12911         29 EDSISCMAFSPS---TLPQYFLIAGSW---D----NNVRCWEVEPNG------KTIPKSMQG-MSEPVLDVAWIDDGTKV   91 (356)
Q Consensus        29 ~~~V~~~~~~~~---~~~~~~l~~~~~---d----g~i~vw~~~~~~------~~~~~~~~~-~~~~v~~~~~s~~~~~l   91 (356)
                      ......|+++|+   +  +.+.++-+.   +    ..|..|+.....      +.+...+.. .......|+|.|||.+.
T Consensus        72 ~~g~~gia~~pdf~~~--g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Ly  149 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKK--SWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLY  149 (354)
T ss_dssp             TCSEEEEEECTTTTTS--CEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEE
T ss_pred             CCceeeEEeCCCCCcC--CEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEE
Confidence            356889999997   3  144444332   3    567777776531      111111221 11234679999999866


Q ss_pred             EEEcC-------------CCeEEEEEcCCC--------c-eeeecccCCCeeEEEEEeCC-CCCeEEE
Q psy12911         92 FMAGC-------------DKTVKCWDLASN--------Q-SMQVAQHDAPVKTCHWIKAP-NYTCLMT  136 (356)
Q Consensus        92 ~~~~~-------------dg~i~vwd~~~~--------~-~~~~~~~~~~v~~~~~~~~~-~~~~l~~  136 (356)
                      ++.+.             .|.|..++....        . .+...++ .....++|.  + ++.++++
T Consensus       150 vt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d--~~~g~l~v~  214 (354)
T 3a9g_A          150 ITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWH--RASGVMVAT  214 (354)
T ss_dssp             EECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEEC--TTTCCEEEE
T ss_pred             EEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEe--CCCCCEEEE
Confidence            66432             245666665432        0 1112233 345678898  7 5655444

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.32  E-value=10  Score=36.12  Aligned_cols=36  Identities=8%  Similarity=0.176  Sum_probs=31.7

Q ss_pred             ceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC
Q psy12911        263 AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP  298 (356)
Q Consensus       263 ~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  298 (356)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t  272 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  272 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence            678888888889999999999999999999876653

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.34  E-value=5.7  Score=31.50  Aligned_cols=244  Identities=14%  Similarity=0.049  Sum_probs=131.5

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC-c
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN-Q  109 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~  109 (356)
                      .|..++....    ..++. . ||.|..|-....++.-...  .....|..++-..+. .++. . ||.|..|-.... +
T Consensus        25 ~i~~ia~G~~----h~~~l-~-~G~v~~wG~n~~Gqlg~p~--~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gq   93 (282)
T 3qhy_B           25 GVDAIAGGYF----HGLAL-K-GGKVLGWGANLNGQLTMPA--ATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQ   93 (282)
T ss_dssp             SCCEEEECSS----EEEEE-E-TTEEEEEECCSSSTTSCCG--GGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTST
T ss_pred             CCcEEEeCCC----eEEEE-E-CCEEEEEeCCCCCCCCCCc--cCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCC
Confidence            6777777655    34444 4 8999999876644321111  122357777665332 2333 4 899999976542 2


Q ss_pred             eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCC
Q psy12911        110 SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLE  188 (356)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  188 (356)
                      +-.-..-...|..++..  .+  ..+.-. ||.|+.|-.... +.-........+..+.......++.. +|.+..|-..
T Consensus        94 lg~P~~~~~~v~~ia~G--~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n  167 (282)
T 3qhy_B           94 TTVPAEARSGVDAIAAG--AW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDN  167 (282)
T ss_dssp             TCCCGGGSSSEEEEEEE--TT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECC
T ss_pred             CCCCcccCCCeEEEECc--CC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCC
Confidence            21111223578888765  33  333344 999999976542 22111112234555555555444445 7999999876


Q ss_pred             CCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEE
Q psy12911        189 GKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIV  268 (356)
Q Consensus       189 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  268 (356)
                      ...+.-  ........+..++.-..     ..++.  .+|.++.|-.+.... .-...+.            ...|..++
T Consensus       168 ~~gqlg--~p~~~~~~v~~i~~G~~-----hs~al--~~G~v~~wG~n~~gq-lg~p~~~------------~~~v~~i~  225 (282)
T 3qhy_B          168 YFGQTT--VPAEAQSGVDDVAGGIF-----HSLAL--KDGKVIAWGDNRYKQ-TTVPTEA------------LSGVSAIA  225 (282)
T ss_dssp             TTSTTS--CCGGGGSSEEEEEECSS-----EEEEE--ETTEEEEEECCTTST-TCCCGGG------------GSSCCEEE
T ss_pred             CCCCCC--CceecCCCeEEEEecCC-----EEEEE--ECCeEEEEECCCCCC-CCCCccc------------CCCceEEE
Confidence            533221  11122345667766554     23444  699999997654321 1000000            01577777


Q ss_pred             EeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEE
Q psy12911        269 FHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAY  320 (356)
Q Consensus       269 ~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  320 (356)
                      ..... .++..  ||.|+.|-.....++...    ..|.+++-.......++
T Consensus       226 ~G~~h-~~al~--~g~v~~wG~n~~gq~~v~----~~v~~iaaG~~h~~al~  270 (282)
T 3qhy_B          226 SGEWY-SLALK--NGKVIAWGSSRTAPSSVQ----SGVSSIEAGPNAAYALK  270 (282)
T ss_dssp             ECSSC-EEEEE--TTEEEEESTTCCCCGGGS----SCEEEEEECSSCEEEEE
T ss_pred             cCCCE-EEEEE--CCEEEEecCCCCccccCC----CCcEEEEECcCeEEEEe
Confidence            65433 33333  999999976654443332    35677766555444333

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.14  E-value=10  Score=32.69  Aligned_cols=114  Identities=11%  Similarity=-0.009  Sum_probs=57.9

Q ss_pred             cceEEEeecCCCCCCC-eEEEeecCCeEEEEEeCCCC-CCCcceeeeecCCCCCCCcccccceEEEEEeCC----CCEEE
Q psy12911        204 QNRCIAIFRDKKKQPA-GYGLGSVEGRVAIQYVNPAN-PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV----HGTLA  277 (356)
Q Consensus       204 ~i~~~~~~~~~~~~~~-~~~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~----~~~l~  277 (356)
                      ....|++.|+    +. .++++...|.|++++.+... ...+..+........  ..........|+|+|+    +.+.+
T Consensus        15 ~P~~~a~~pd----G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~--~~~~e~Gllgia~~P~f~~n~~lYv   88 (463)
T 2wg3_C           15 QPVGALHSGD----GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGI--KGGDERGLLSLAFHPNYKKNGKLYV   88 (463)
T ss_dssp             SEEEEECCSS----SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCC--SSSCCCSEEEEEECTTHHHHCEEEE
T ss_pred             CceEEEECCC----CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCc--cccCCCcceeeEeCCCCcCCCEEEE
Confidence            4578999999    54 57777889999888643221 111111110000000  0000125789999996    43333


Q ss_pred             EEcC--C----------CeEEEEEcCcc----------eecCCCC--CCccceEEEEECCCCCEEEEEec
Q psy12911        278 TVGS--E----------GTFSFWDKDAR----------TKLKPSE--AMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       278 s~~~--d----------g~i~iwd~~~~----------~~~~~~~--~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      +-+.  +          ..|.-|.+..+          +.+..+.  .....-..|+|.|||.+.++.++
T Consensus        89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             EEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            3221  1          14444555321          1222211  11123578999999977766653

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=87.01  E-value=18  Score=33.12  Aligned_cols=224  Identities=8%  Similarity=0.007  Sum_probs=111.0

Q ss_pred             ceeEEE-EccCCCeEEEEc-----CCCeEEEEEcCCCceee--ecccCC--------CeeEEEEEeCCCCCeEEEEE---
Q psy12911         78 PVLDVA-WIDDGTKVFMAG-----CDKTVKCWDLASNQSMQ--VAQHDA--------PVKTCHWIKAPNYTCLMTGS---  138 (356)
Q Consensus        78 ~v~~~~-~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~--~~~~~~--------~v~~~~~~~~~~~~~l~~~~---  138 (356)
                      ....+. ++|++++++.+-     .-..++++|+.+++.+.  +. ...        ....++|.  .+...+++..   
T Consensus       130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~--d~~~~~~~~~~~~  206 (711)
T 4hvt_A          130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWI--NKDTIIFNLVLHK  206 (711)
T ss_dssp             EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEE--ETTEEEECCCCST
T ss_pred             EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEE--CCCEEEEEeCCCC
Confidence            344455 889998776542     23479999999998774  22 111        11344775  4444444321   


Q ss_pred             -------CCCeEEEEeCCCCC--ceEEEeCCCee--E--EEecCCCe-----EEEEe---cCCeEEEEeCCCCccccccc
Q psy12911        139 -------WDKTLKFWDLRTPQ--PIMTINLPERC--Y--CADVDYPL-----AVVGT---AGRGIVLYQLEGKPQEFKKT  197 (356)
Q Consensus       139 -------~dg~i~iwd~~~~~--~~~~~~~~~~~--~--~~~~~~~~-----~~~~~---~d~~i~i~d~~~~~~~~~~~  197 (356)
                             ....|+.|.+-+..  -...+.....-  +  ....++..     ++..+   ....+.+.+..........+
T Consensus       207 ~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l  286 (711)
T 4hvt_A          207 NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKI  286 (711)
T ss_dssp             TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEEC
T ss_pred             CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEe
Confidence                   12468888876652  33344433321  1  12223332     23222   12456666655322222222


Q ss_pred             cCcccccceEEEeecCCCCCCCeEEEe----------ecCCeEEEEEeCCCCC-----CCcceeeeecCCCCCCCccccc
Q psy12911        198 ESPLKYQNRCIAIFRDKKKQPAGYGLG----------SVEGRVAIQYVNPANP-----KDNFTFKCHRSNGGAGGVQDIY  262 (356)
Q Consensus       198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      ..+...   .+..+..    +.+++..          ...+.|...+++....     .....+-.+..         ..
T Consensus       287 ~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  350 (711)
T 4hvt_A          287 NMPSDA---TLQGSFK----EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA---------NE  350 (711)
T ss_dssp             CSCTTC---EEEEEET----TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT---------TE
T ss_pred             ecCCcc---eEeeeEC----CEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC---------CC
Confidence            222221   1222333    3333322          2466788888765311     11222222211         01


Q ss_pred             ceEEEEEeCCCCEEEEEcCCCe--EEEEEcCcce-ecCC-CCCC-ccceEEEEECCCCCEEEEE
Q psy12911        263 AVNGIVFHPVHGTLATVGSEGT--FSFWDKDART-KLKP-SEAM-DMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       263 ~i~~i~~sp~~~~l~s~~~dg~--i~iwd~~~~~-~~~~-~~~~-~~~v~~~~~s~~~~~l~~~  321 (356)
                      .+..+.+..+ .++++...++.  |.++++.+++ .... +.-. .+.+.....++++..++..
T Consensus       351 ~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~  413 (711)
T 4hvt_A          351 VFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALIT  413 (711)
T ss_dssp             EEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEE
T ss_pred             eEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEE
Confidence            5778888865 57777777764  6777776664 2222 2211 2456667777777655443

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=86.72  E-value=1.8  Score=38.42  Aligned_cols=60  Identities=5%  Similarity=0.049  Sum_probs=44.0

Q ss_pred             ceEEEEEeCCCCEEEEEcCC------------CeEEEEEcCcceecCCCCCC-ccceEEEEECCCCCEEEEEe
Q psy12911        263 AVNGIVFHPVHGTLATVGSE------------GTFSFWDKDARTKLKPSEAM-DMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       263 ~i~~i~~sp~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~s  322 (356)
                      ..-.|+|+|.|+++++-..+            ..+.+.+..+++....+.++ ...++.++|+||++.|.+..
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence            34679999999977765432            24666677777765555444 45899999999999998875

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.77  E-value=34  Score=32.65  Aligned_cols=39  Identities=33%  Similarity=0.417  Sum_probs=32.9

Q ss_pred             CeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC
Q psy12911        119 PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL  159 (356)
Q Consensus       119 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  159 (356)
                      .+.++...  ++..++++-+.|+++|+|++.+++++.+...
T Consensus       237 ~~~~~~~~--~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFL--STYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEE--TTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeec--CCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            45666666  7888999999999999999999999888764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.64  E-value=3.9  Score=39.92  Aligned_cols=36  Identities=8%  Similarity=0.176  Sum_probs=30.6

Q ss_pred             ceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC
Q psy12911        263 AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP  298 (356)
Q Consensus       263 ~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  298 (356)
                      .+.+++..++..++++-+.|+++|||++.+++++.+
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t  274 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  274 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence            556677788889999999999999999999877553

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=82.28  E-value=4.3  Score=35.75  Aligned_cols=62  Identities=5%  Similarity=0.031  Sum_probs=45.1

Q ss_pred             cceEEEEEeCCCCEEEEEcC------------CCeEEEEEcCcceecCCCCCC-ccceEEEEECCCCCEEEEEec
Q psy12911        262 YAVNGIVFHPVHGTLATVGS------------EGTFSFWDKDARTKLKPSEAM-DMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       262 ~~i~~i~~sp~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      .....|.|.++|.+.++...            ...|..++..+++....+.+. ...++.++|+||++.|.++--
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ  550 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence            35778999999988774432            225777777777765544433 357899999999999998874

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=81.02  E-value=34  Score=31.40  Aligned_cols=238  Identities=12%  Similarity=0.104  Sum_probs=115.2

Q ss_pred             eeEEE-ecCCCCCceEEEEE-eCCC----eEEEEeccCCCceeeeeec-cCCc------ceeEEEEccCCCeEEEE----
Q psy12911         32 ISCMA-FSPSTLPQYFLIAG-SWDN----NVRCWEVEPNGKTIPKSMQ-GMSE------PVLDVAWIDDGTKVFMA----   94 (356)
Q Consensus        32 V~~~~-~~~~~~~~~~l~~~-~~dg----~i~vw~~~~~~~~~~~~~~-~~~~------~v~~~~~s~~~~~l~~~----   94 (356)
                      ...+. ++|++   ++++.+ |..|    .++++|+.+. ..+...+. .-+.      ....++|..+...+++.    
T Consensus       131 ~~g~~~~~~~~---~~~~~~ls~~G~d~~~~~~~d~~t~-~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~  206 (711)
T 4hvt_A          131 YRGVSNCFQNP---NRYLISMSFGGKDEMFFREWDLEKK-DFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHK  206 (711)
T ss_dssp             EEEEEECSSST---TEEEEEEEETTCSEEEEEEEETTTT-EECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCST
T ss_pred             EeceeecCCCC---CEEEEEeCCCCCceeEEEEEECCcC-CcCCCCcccccccccccccccceeeEECCCEEEEEeCCCC
Confidence            44555 88998   555544 4333    6999999882 22211222 0000      11345887444333332    


Q ss_pred             ------cCCCeEEEEEcCCCce---eeecccCCCe-eEEEEEeCCCCC-----eEEEEECC---CeEEEEeCCCC-CceE
Q psy12911         95 ------GCDKTVKCWDLASNQS---MQVAQHDAPV-KTCHWIKAPNYT-----CLMTGSWD---KTLKFWDLRTP-QPIM  155 (356)
Q Consensus        95 ------~~dg~i~vwd~~~~~~---~~~~~~~~~v-~~~~~~~~~~~~-----~l~~~~~d---g~i~iwd~~~~-~~~~  155 (356)
                            +....|+.|.+-+...   +.+.+....+ .....+  .++.     .+++.+.+   ..+.+.|.... ..+.
T Consensus       207 ~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  284 (711)
T 4hvt_A          207 NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKL--LSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ  284 (711)
T ss_dssp             TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEES--SCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE
T ss_pred             CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEe--cCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce
Confidence                  1135788888876532   1233323333 233334  5554     24444322   45666675532 1234


Q ss_pred             EEeCCCeeEEEecCCCeEEE-E----------ecCCeEEEEeCCCCc------ccccc-ccCcccccceEEEeecCCCCC
Q psy12911        156 TINLPERCYCADVDYPLAVV-G----------TAGRGIVLYQLEGKP------QEFKK-TESPLKYQNRCIAIFRDKKKQ  217 (356)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~-~----------~~d~~i~i~d~~~~~------~~~~~-~~~~~~~~i~~~~~~~~~~~~  217 (356)
                      .+..+.....+...+..+++ .          ...+.|...|+.+..      ..... +.......+..+.+..+    
T Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----  360 (711)
T 4hvt_A          285 KINMPSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD----  360 (711)
T ss_dssp             ECCSCTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS----
T ss_pred             EeecCCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC----
Confidence            44444432222222333333 1          246788999987642      11111 22233455677777765    


Q ss_pred             CCeEEEeecCCeEEEEEeCCCCCC-Ccce-eeee-cCCCCCCCcccccceEEEEEeCCCC-EEEEEcC---CCeEEEEEc
Q psy12911        218 PAGYGLGSVEGRVAIQYVNPANPK-DNFT-FKCH-RSNGGAGGVQDIYAVNGIVFHPVHG-TLATVGS---EGTFSFWDK  290 (356)
Q Consensus       218 ~~~~~~~~~dg~i~i~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~~---dg~i~iwd~  290 (356)
                       .++++...++.-+++-++..... .... +... ..           .+.....++++. ++++.+.   -+.+..+|+
T Consensus       361 -~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~-----------~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~  428 (711)
T 4hvt_A          361 -RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN-----------AIFGMSSYEEEEEALITIENSIVPPTIYLWVK  428 (711)
T ss_dssp             -CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT-----------CEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             -EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe-----------EEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence             46777777776555444321111 1122 1111 11           466666667764 4444332   367888887


Q ss_pred             C
Q psy12911        291 D  291 (356)
Q Consensus       291 ~  291 (356)
                      .
T Consensus       429 ~  429 (711)
T 4hvt_A          429 T  429 (711)
T ss_dssp             T
T ss_pred             C
Confidence            5

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	356
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-32
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.003
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-04

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  121 bits (304), Expect = 2e-32
 Identities = 67/325 (20%), Positives = 120/325 (36%), Gaps = 19/325 (5%)

Query: 20  KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIP-KSMQGMSEP 78
           +  ++   P+D IS +   PS   +  L+  SWD ++  ++ +   K +          P
Sbjct: 2   QIVQIEQAPKDYISDIKIIPS---KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHP 58

Query: 79  VLDVAWI-DDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTG 137
           +L   +I +   ++++      +   DL  + S Q   ++        I       L+  
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 138 SWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT 197
           SWD  ++  D R     +            V   +  + T    +++     + Q F+  
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 198 ESPLKYQNRCIAIFRDKKKQPA-------GYGLGSVEGRVAIQYVNPA----NPKDNFTF 246
                      +  + + +  A       GY   S++GRVA+++ +      N    F F
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238

Query: 247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSI 306
           +CHR N         Y VN I F P H  L T GS+G  S W+   R K+K     +   
Sbjct: 239 RCHRLNLK--DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-ED 295

Query: 307 STCALNHNGQIFAYAVSYDWSKGHE 331
           S   +  +  I   A S D  K + 
Sbjct: 296 SVVKIACSDNILCLATSDDTFKTNA 320

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.0 bits (193), Expect = 4e-17
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 6/125 (4%)

Query: 24  VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVA 83
             +  E  I+ + F P+         GS D   R +++  + + +  S   +   +  V+
Sbjct: 221 TFTGHESDINAICFFPN---GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277

Query: 84  WIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKT 142
           +   G  +     D     WD        V   HD  V         +   + TGSWD  
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV--TDDGMAVATGSWDSF 335

Query: 143 LKFWD 147
           LK W+
Sbjct: 336 LKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.0 bits (167), Expect = 9e-14
 Identities = 47/304 (15%), Positives = 85/304 (27%), Gaps = 32/304 (10%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG 88
              I  M +         L++ S D  +  W+          ++   S  V+  A+   G
Sbjct: 55  LAKIYAMHWGTD---SRLLVSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSG 109

Query: 89  TKVFMAGCDKTVKCWDLASNQS--MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW 146
             V   G D     ++L + +       +           +  +   ++T S D T   W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 147 DLRTPQPIMTINLPE---RCYCADVDYPLAVVGTAGRGIVLYQLE-GKP-QEFKKTESPL 201
           D+ T Q   T               D  L V G       L+ +  G   Q F   ES +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229

Query: 202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDI 261
                 I  F +       +  GS +    +  +        ++                
Sbjct: 230 ----NAICFFPNGNA----FATGSDDATCRLFDLRADQELMTYSHDNIIC---------- 271

Query: 262 YAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYA 321
             +  + F      L     +   + WD     +       D  +S   +  +G   A  
Sbjct: 272 -GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA-T 329

Query: 322 VSYD 325
            S+D
Sbjct: 330 GSWD 333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (106), Expect = 5e-06
 Identities = 31/253 (12%), Positives = 71/253 (28%), Gaps = 18/253 (7%)

Query: 70  KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKA 128
           ++++G    +  + W  D   +  A  D  +  WD  +   +       + V TC +  +
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108

Query: 129 PNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLE 188
            NY          ++     R     ++  L               +             
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF---LDDNQIVTSSGDTT 165

Query: 189 GKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC 248
               + +  +    +      +            + S     + +  +        TF  
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV-SGACDASAKLWDVREGMCRQTFTG 224

Query: 249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDM--SI 306
           H S            +N I F P     AT   + T   +D  A  +L      ++   I
Sbjct: 225 HES-----------DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273

Query: 307 STCALNHNGQIFA 319
           ++ + + +G++  
Sbjct: 274 TSVSFSKSGRLLL 286

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 13/126 (10%)

Query: 211 FRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFH 270
            RD +K  A   L  +   +    V     +   T + H +            +  + + 
Sbjct: 18  IRDARKACADATLSQITNNI--DPVGRIQMRTRRTLRGHLA-----------KIYAMHWG 64

Query: 271 PVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGH 330
                L +   +G    WD     K+         + TCA   +G   A     +    +
Sbjct: 65  TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124

Query: 331 EHNNPN 336
                 
Sbjct: 125 NLKTRE 130

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (186), Expect = 3e-16
 Identities = 47/301 (15%), Positives = 100/301 (33%), Gaps = 11/301 (3%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG 88
              ++ + F P       +++ S D  ++ W+ E       ++++G ++ V D+++   G
Sbjct: 17  RSPVTRVIFHPV---FSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSG 71

Query: 89  TKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
             +     D T+K WD           H            PN   +++ S DKT+K W++
Sbjct: 72  KLLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 149 RTPQPIMTINLPERCYCADVDYPLA-VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRC 207
           +T   + T                  ++ +      +       +E K      ++   C
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 208 IAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG---AGGVQDIYAV 264
           I+   +          GS   +         +   + T K    + G      V     V
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 265 NGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY 324
            G++FH     + +   + T   WD   +  +K   A +  +++   +          S 
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV-TGSV 309

Query: 325 D 325
           D
Sbjct: 310 D 310

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.8 bits (169), Expect = 5e-14
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 5/118 (4%)

Query: 31  SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
             +      S  P  FL++GS D  ++ W+V   G  +  ++ G    V  V +   G  
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCL-MTLVGHDNWVRGVLFHSGGKF 261

Query: 91  VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD 147
           +     DKT++ WD  + + M+    H+  V +  +        ++TGS D+T+K W+
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF--HKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 1e-08
 Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG 88
           ++ +  + F        F+++ + D  +R W+ + N + + K++      V  + +    
Sbjct: 247 DNWVRGVLFHSG---GKFILSCADDKTLRVWDYK-NKRCM-KTLNAHEHFVTSLDFHKTA 301

Query: 89  TKVFMAGCDKTVKCWD 104
             V     D+TVK W+
Sbjct: 302 PYVVTGSVDQTVKVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.3 bits (178), Expect = 5e-15
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVE----------PNGKTIPKSMQGMSEP 78
           +DS+  + F+        +++GS D +V+ W ++          PN  T   +  G  + 
Sbjct: 254 KDSVYSVVFTRD---GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 79  VLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKA----PNYTC 133
           VL VA   +   +     D+ V  WD  S   + + Q H   V +          P Y  
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 134 LMTGSWDKTLKFWDLR 149
             TGS D   + W  +
Sbjct: 371 FATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 48/297 (16%), Positives = 88/297 (29%), Gaps = 25/297 (8%)

Query: 7   LSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK 66
           LS  +  +    N +       +  I  + FSP      FL  G+ D  +R W++E    
Sbjct: 99  LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD---GKFLATGAEDRLIRIWDIENRKI 155

Query: 67  TIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWI 126
            +             + +   G K+     D+TV+ WDL + Q       +  V T    
Sbjct: 156 VMILQGHEQDIY--SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213

Query: 127 KAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----------RCYCADVDYPLAVVG 176
              +   +  GS D+ ++ WD  T   +  ++                    D    V G
Sbjct: 214 P-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQ----PAGYGLGSVEGRVAI 232
           +  R + L+ L+    +                  +D             + S      +
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332

Query: 233 QYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD 289
            + +  +       + HR       V  +   NG    P +   AT   +     W 
Sbjct: 333 LFWDKKSGNPLLMLQGHR-----NSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 9e-08
 Identities = 51/324 (15%), Positives = 102/324 (31%), Gaps = 35/324 (10%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK----------------TIPKSM 72
              + C+ FS         +A   +   + + V                         S 
Sbjct: 62  TSVVCCVKFSNDGE----YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117

Query: 73  QGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYT 132
                 +  V +  DG  +     D+ ++ WD   N+ + +               P+  
Sbjct: 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD-IENRKIVMILQGHEQDIYSLDYFPSGD 176

Query: 133 CLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLA---VVGTAGRGIVLYQLEG 189
            L++GS D+T++ WDLRT Q  +T+++ +      V          G+  R + ++  E 
Sbjct: 177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE- 235

Query: 190 KPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL--GSVEGRVAIQYVNPANPKDNFTFK 247
                ++ +S  +                 G  +  GS++  V +  +  AN K +    
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 248 CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSIS 307
              +          + V  +        + +   +    FWDK +   L   +    S+ 
Sbjct: 296 NSGTCEVTYIGHKDF-VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354

Query: 308 TCA------LNHNGQIFAYAVSYD 325
           + A      L     +FA   S D
Sbjct: 355 SVAVANGSSLGPEYNVFATG-SGD 377

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.6 bits (163), Expect = 4e-13
 Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 4/140 (2%)

Query: 30  DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT 89
           + ISC A++     +  +     ++ V  +E   N       ++  +  V  V W  D  
Sbjct: 8   EPISCHAWNKD---RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 64

Query: 90  KVFMAGCDKTVKCWDLASNQSMQVAQHDAPVK-TCHWIKAPNYTCLMTGSWDKTLKFWDL 148
           ++   G D+    W L               +       APN      GS  + +     
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 149 RTPQPIMTINLPERCYCADV 168
                       ++   + V
Sbjct: 125 EQENDWWVCKHIKKPIRSTV 144

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.0 bits (151), Expect = 1e-11
 Identities = 41/258 (15%), Positives = 80/258 (31%), Gaps = 13/258 (5%)

Query: 73  QGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ---HDAPVKTCHWIKAP 129
             + EP+   AW  D T++ +   +  V  ++ + N+ +QV +   H+  V    W  AP
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW--AP 61

Query: 130 NYTCLMTGSWDKTLKFWDLRTP--QPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQL 187
           +   ++T   D+    W L+    +P + I    R        P       G G  +  +
Sbjct: 62  DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121

Query: 188 EGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYG-LGSVEGRVAI-----QYVNPANPK 241
               QE          +     +        +     GS + +  I     + V      
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 181

Query: 242 DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA 301
             +  K                V+G+ F      +A V  + T    D D +  +    +
Sbjct: 182 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 241

Query: 302 MDMSISTCALNHNGQIFA 319
             + +          + A
Sbjct: 242 ETLPLLAVTFITESSLVA 259

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 4/118 (3%)

Query: 37  FSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC 96
            + + + +  L+A   D     +  +     +  S  G  +     +      +      
Sbjct: 247 LAVTFITESSLVAAGHDCFPVLFTYDSAAGKL--SFGGRLDVPKQSSQRGLTARERFQNL 304

Query: 97  DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTC--LMTGSWDKTLKFWDLRTPQ 152
           DK       A+  +   + H   V     +      C    T   D  +  WD+R+ +
Sbjct: 305 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 1e-11
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 4/116 (3%)

Query: 46  FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
            +++GS D ++R W+VE        ++ G       +        +     D TVK WD+
Sbjct: 189 HVVSGSLDTSIRVWDVETG--NCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDI 244

Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE 161
            + Q +Q  Q     ++       N   ++T S D T+K WDL+T + I  +   E
Sbjct: 245 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 41/248 (16%), Positives = 70/248 (28%), Gaps = 25/248 (10%)

Query: 50  GSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ 109
           GS D  +R W++E            M           DG +V     D  VK WD  +  
Sbjct: 113 GSRDATLRVWDIETG----QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET 168

Query: 110 SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCA-DV 168
            +   Q         +    +   +++GS D +++ WD+ T   I T+   +      ++
Sbjct: 169 CLHTLQGH---TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 225

Query: 169 DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG 228
              + V G A   + ++ ++                      F             S +G
Sbjct: 226 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF-----VITSSDDG 280

Query: 229 RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFS-- 286
            V +  +       N        +GG         V  I         A     GT    
Sbjct: 281 TVKLWDLKTGEFIRNLVTLESGGSGG--------VVWRIRASNTKLVCAVGSRNGTEETK 332

Query: 287 --FWDKDA 292
               D D 
Sbjct: 333 LLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 44/294 (14%), Positives = 84/294 (28%), Gaps = 34/294 (11%)

Query: 32  ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
           I+C+ F  +      +++GS DN ++ W     GK + +++ G +  V      D+    
Sbjct: 20  ITCLQFCGN-----RIVSGSDDNTLKVWSAV-TGKCL-RTLVGHTGGVWSSQMRDNIIIS 72

Query: 92  FMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP 151
                   V   +                             +++GS D TL+ WD+ T 
Sbjct: 73  GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-----EKRVVSGSRDATLRVWDIETG 127

Query: 152 QPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIF 211
           Q +  +                VV  A   +V         E +     L+     +   
Sbjct: 128 QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW----DPETETCLHTLQGHTNRVYSL 183

Query: 212 RDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP 271
           +           GS++  + +  V   N     T                   +G+    
Sbjct: 184 QFDGIHVVS---GSLDTSIRVWDVETGNCIHTLTGHQS-------------LTSGMELKD 227

Query: 272 VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325
               L +  ++ T   WD      L+  +  +   S        + F    S D
Sbjct: 228 --NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD 279

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 103 WDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN 158
           W     +S +V + HD  V TC          +++GS D TLK W   T + + T+ 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCL---QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 25/247 (10%), Positives = 59/247 (23%), Gaps = 28/247 (11%)

Query: 69  PKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIK 127
           PK ++G  + V+       G ++     D T+K W   + + ++    H   V +     
Sbjct: 9   PKVLKGHDDHVITCLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM-- 65

Query: 128 APNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQL 187
             N     +      +   +       +        + + V            G     L
Sbjct: 66  RDNIIISGSTDRTLKVWNAETGECIHTL------YGHTSTVRCMHLHEKRVVSGSRDATL 119

Query: 188 EGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK 247
                E  +    L      +   +   ++        +     ++  +P       T +
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM-----VKVWDPETETCLHTLQ 174

Query: 248 CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSIS 307
            H                          + +   + +   WD +    +          S
Sbjct: 175 GH-------------TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 221

Query: 308 TCALNHN 314
              L  N
Sbjct: 222 GMELKDN 228

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 2e-10
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 52  WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSM 111
                   EV    K     +      VL + +   G      G D  +  W      S+
Sbjct: 241 VGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300

Query: 112 QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
             ++  + V +C    + +   ++TGS DK    +++
Sbjct: 301 FQSKESSSVLSCDI--SVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 35/300 (11%), Positives = 78/300 (26%), Gaps = 26/300 (8%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKS---MQGMSEPVLDVAWI 85
            + +  +  S  T      +       V+ W++   G   P S          +     +
Sbjct: 51  GEVVCAVTISNPTR----HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 86  DDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF 145
            DG  + + G   T+  WDLA+      A+  +    C+ +     + +           
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166

Query: 146 WDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQN 205
                 Q ++          + +D           G     L+   + +   E     Q+
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-----LDNTVRSWDLREGRQLQQH 221

Query: 206 RCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVN 265
              +        P G            +++       N                    V 
Sbjct: 222 DFTSQIFSLGYCPTG------------EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL 269

Query: 266 GIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325
            + F        + G +   + W       +  S+    S+ +C ++ + +      S D
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-SVLSCDISVDDKYIV-TGSGD 327

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 6e-07
 Identities = 15/133 (11%), Positives = 37/133 (27%), Gaps = 4/133 (3%)

Query: 57  RCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQH 116
                    +         +  +  + +   G  + +      V+   +      Q+  H
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH 264

Query: 117 DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADV--DYPLAV 174
           ++ V +  +  A      ++   D  L  W       I            D+  D    V
Sbjct: 265 ESCVLSLKF--AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIV 322

Query: 175 VGTAGRGIVLYQL 187
            G+  +   +Y++
Sbjct: 323 TGSGDKKATVYEV 335

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 7e-10
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 7/140 (5%)

Query: 32  ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
           I+C+ F  +     ++I G+ D  +R ++   N K +   + G    V  + +   G  V
Sbjct: 16  ITCLQFEDN-----YVITGADDKMIRVYDSI-NKKFL-LQLSGHDGGVWALKYAHGGILV 68

Query: 92  FMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP 151
             +               +     H++ V+    ++  N   ++TGS D TL  W L   
Sbjct: 69  SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128

Query: 152 QPIMTINLPERCYCADVDYP 171
             +                 
Sbjct: 129 SSVPDHGEEHDYPLVFHTPE 148

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 1e-08
 Identities = 34/297 (11%), Positives = 83/297 (27%), Gaps = 5/297 (1%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG 88
           +  +  + ++   +    L++GS D  VR W+++    T        +   LD+    + 
Sbjct: 53  DGGVWALKYAHGGI----LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 108

Query: 89  TKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
             +     D T+  W L    S+     +            N   +              
Sbjct: 109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168

Query: 149 RTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCI 208
                +++ +        DV     +   +G    +Y      +  +   + +    R  
Sbjct: 169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 228

Query: 209 AIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIV 268
            +   +           V           +   D        ++           ++ I 
Sbjct: 229 DLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 288

Query: 269 FHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325
              V   +   GSE  F+ ++  +   +  +  +  +    ++N  G+    AV  D
Sbjct: 289 TFYVSDNILVSGSENQFNIYNLRSGKLVH-ANILKDADQIWSVNFKGKTLVAAVEKD 344

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 6/79 (7%), Positives = 22/79 (27%), Gaps = 5/79 (6%)

Query: 72  MQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV--AQHDAPVKTCHWIKAP 129
                  +  +        + ++G +     ++L S + +     +    + + ++    
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF---K 333

Query: 130 NYTCLMTGSWDKTLKFWDL 148
             T +     D       L
Sbjct: 334 GKTLVAAVEKDGQSFLEIL 352

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 5e-09
 Identities = 44/310 (14%), Positives = 100/310 (32%), Gaps = 62/310 (20%)

Query: 20  KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
           +     S     + C+ +         +++G  DN ++ W+   N     + + G +  V
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQ-----KIVSGLRDNTIKIWDK--NTLECKRILTGHTGSV 58

Query: 80  LDVAW--------------------------------------IDDGTKVFMAGCDKTVK 101
           L + +                                        +   +     D+++ 
Sbjct: 59  LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118

Query: 102 CWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN-LP 160
            WD+AS   + + +     +    +   +   +++ S D+T+K W+  T + + T+N   
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178

Query: 161 ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAG 220
               C      L V G++   I L+ +E          + L+       + R  +     
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIE--------CGACLRVLEGHEELVRCIRFDNKR 230

Query: 221 YGLGSVEGRVAI-QYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV 279
              G+ +G++ +   V   +P+      C R+     G      V  + F      + + 
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-----RVFRLQFDE--FQIVSS 283

Query: 280 GSEGTFSFWD 289
             + T   WD
Sbjct: 284 SHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 2/103 (1%)

Query: 65  GKTIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKT 122
           G+   + +   SE    V  +  D  K+     D T+K WD  + +  ++   H   V  
Sbjct: 1   GRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

Query: 123 CHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYC 165
             + +    T     +               I           
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 103

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 12/116 (10%), Positives = 30/116 (25%), Gaps = 4/116 (3%)

Query: 45  YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104
                          +++       +           +    D  +++       +  +D
Sbjct: 221 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYD 278

Query: 105 LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP 160
           L   + ++ A  D       +        L  G     L  ++  T + +  I LP
Sbjct: 279 LKQRKLIKAANLDHTYYCVAF--DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 28/293 (9%), Positives = 66/293 (22%), Gaps = 24/293 (8%)

Query: 27  PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN----GKTIPKSMQGMSEPVLDV 82
           P +        +P    +   +  +   ++   +++         +      +   +   
Sbjct: 37  PDKFGPGTAMMAPDN--RTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF 94

Query: 83  AWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDA---PVKTCHWIKAPNYTCLMTGSW 139
           A   DG +V+                         A     K       P    LM  + 
Sbjct: 95  AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD 154

Query: 140 DKTL-------KFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQ 192
           D +L          D++T +  + + L            +            + +     
Sbjct: 155 DGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214

Query: 193 EFKKTESPLKYQN--RCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP-----ANPKDNFT 245
            FK  +      +          K  +        +         +P          N  
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRL 274

Query: 246 FKCHRSNGGAGGVQDIYA-VNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297
            K            ++      + F      L   G+    + ++ D   K+K
Sbjct: 275 AKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 11/129 (8%), Positives = 32/129 (24%), Gaps = 10/129 (7%)

Query: 35  MAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA 94
            A         ++I  ++ NN+   +V  +       +              D    ++ 
Sbjct: 2   PALKAGH---EYMIVTNYPNNLHVVDVA-SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVL 57

Query: 95  GC-DKTVKCWDLASNQSMQVAQHDAPVKT-----CHWIKAPNYTCLMTGSWDKTLKFWDL 148
                 +   DL + ++   A   +           +  +P+   +              
Sbjct: 58  NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 117

Query: 149 RTPQPIMTI 157
               P + +
Sbjct: 118 VVKPPRLEV 126

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 11/90 (12%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 20  KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
           K  +  +     ++ + F+    P+         N +  ++++   K I  +        
Sbjct: 238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLK-QRKLIKAANLD--HTY 294

Query: 80  LDVAWIDDGTKVFMAGCDKTVKCWDLASNQ 109
             VA+   G K+++ G    +  ++  + +
Sbjct: 295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 2e-07
 Identities = 39/374 (10%), Positives = 88/374 (23%), Gaps = 60/374 (16%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPK----SMQGMSEPVLDVAW 84
           +  I  ++   S     F ++ S D  ++ W+ +      PK    S       +  V  
Sbjct: 14  DADIFSVSACNS-----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 85  ID-------DGTKVFMAGCDKTVKCWDLASN-----------QSMQVAQHDAPVKTCHWI 126
           +        +   V        +  + +                +             W 
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 127 KAPNYTC---LMTGSWDKTLKFWDLRTPQ-----------PIMTINLPERCYCADVDYPL 172
            + +      L+      T   W                 P + +            +  
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188

Query: 173 AV---------VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL 223
           +V          G     + + +L      +          N           Q +   +
Sbjct: 189 SVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 248

Query: 224 GSVEGRVAIQ-YVNPANPKDNFTFKCHRSNGGAGGVQDIY--AVNGIVFHPVHGTLATVG 280
                             +   +      +  A   +  +   V  + F+    TL + G
Sbjct: 249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 308

Query: 281 SEGTFSFWDKDARTKLKP----SEAMDMSISTCALNHNGQIFAYAVSYD---WSKGHEHN 333
            +G   FWD   + ++       + +++     A++ +G   A    +D     KG    
Sbjct: 309 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG 368

Query: 334 NPNKGNAIFLRPCF 347
                N      C 
Sbjct: 369 MGADLNESLCCVCL 382

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 1e-06
 Identities = 23/159 (14%), Positives = 45/159 (28%), Gaps = 23/159 (14%)

Query: 19  NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVR----CWEVEPNGKTIPKSMQG 74
               E    P    + +  S   L    +  G  +  V+                 SM  
Sbjct: 174 QGTVESPMTPSQFATSVDISERGL----IATGFNNGTVQISELSTLRPLYNFESQHSMIN 229

Query: 75  MSEPVLDVAWIDDGTKVFMAGCDKTV---KCWDLASNQSMQVAQHDAPVKTC-------- 123
            S  +  V +   G+ + +A    +      ++    + +                    
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289

Query: 124 ----HWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN 158
                     +   L +  WD  L+FWD++T + I T+N
Sbjct: 290 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 328

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 12/97 (12%), Positives = 24/97 (24%), Gaps = 14/97 (14%)

Query: 73  QGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSM------------QVAQHDAPV 120
           +     +  V+     +       D  +K WD     +             +   H   V
Sbjct: 11  KAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 121 KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI 157
                  A     + T S+   L F+ +        +
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKV 105

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 5e-07
 Identities = 15/114 (13%), Positives = 40/114 (35%), Gaps = 5/114 (4%)

Query: 47  LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA 106
               ++   +   ++   G+   + ++ M       A     T+ F       ++ +DL 
Sbjct: 212 ADPTAYRTGLLTMDL-ETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLE 268

Query: 107 SNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP 160
            N S++         + +   + + + +  G     L  +D  T +    ++LP
Sbjct: 269 KNASIKRVPLPHSYYSVNV--STDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (105), Expect = 7e-06
 Identities = 23/294 (7%), Positives = 66/294 (22%), Gaps = 16/294 (5%)

Query: 44  QYFLIAGSWDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTV 100
           + +++A +  + +   + E     K I  +  G +   +       G   +      +++
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPT--PMVPMVAPGGRIAYATVNKSESL 58

Query: 101 KCWDLASNQSMQVAQHDAPVKTCHWIKA----PNYTCLMTGSWDKTLKFWDLRTPQPIM- 155
              DL + +++       P +    +      P+   L        L+          + 
Sbjct: 59  VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118

Query: 156 ---TINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFR 212
                 L  R           +        +            +  + ++ +        
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE 178

Query: 213 DKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQ-DIYAVNGIVFHP 271
              +          E    +        KD           G   +  +   +       
Sbjct: 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238

Query: 272 VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325
           +     +       +                + SI    +      ++  VS D
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKR--VPLPHSYYSVNVSTD 290

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 9e-05
 Identities = 25/291 (8%), Positives = 69/291 (23%), Gaps = 22/291 (7%)

Query: 25  VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN---GKTIPKSMQGMSEPVLD 81
           ++    +      +P    +      +   ++   ++      G+    + +   + +  
Sbjct: 29  IADAGPTPMVPMVAPGG--RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86

Query: 82  VAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIK----------APNY 131
            A   DG  + +      ++        +         +      +          A + 
Sbjct: 87  AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG 146

Query: 132 TCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKP 191
           + L     D  +   +  T      I   E    A  D              +       
Sbjct: 147 SKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN--QHESSGVMATPFYT 204

Query: 192 QEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH-- 249
                  +        +     +  + A   +  ++       VNPA  +    +     
Sbjct: 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLES 264

Query: 250 ---RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297
                N     V   ++   +       T+   G+ G  + +D +   K  
Sbjct: 265 FDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 5e-07
 Identities = 18/97 (18%), Positives = 34/97 (35%)

Query: 52  WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSM 111
              N          +         S  V  + W  DGTK+  A  DKT+K W++A+ +  
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273

Query: 112 QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
           +       ++            L++ S +  + F + 
Sbjct: 274 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 32/269 (11%), Positives = 66/269 (24%), Gaps = 21/269 (7%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG 88
               +    SPS    Y+  +G    NVR W+       +  ++   S PV D++W  + 
Sbjct: 58  SHQTTVAKTSPS---GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES 114

Query: 89  TKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
            ++   G  +         +            +  + +           S          
Sbjct: 115 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 174

Query: 149 RTPQPIMTINLP----ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQ 204
             P                             T G G ++        +    E      
Sbjct: 175 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 234

Query: 205 NRCIAIFRDKKKQPAGYGL--GSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIY 262
                        P G  +   S +  + I  V         T K  ++      ++D  
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA--------TLKVEKTIPVGTRIED-- 284

Query: 263 AVNGIVFHPVHGTLATVGSEGTFSFWDKD 291
               +        L ++ + G  +F + +
Sbjct: 285 --QQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 30/256 (11%), Positives = 55/256 (21%), Gaps = 11/256 (4%)

Query: 34  CMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM 93
            +  +P+       I      +V    V     T  +     S           G     
Sbjct: 22  VLGNTPAGD----KIQYCNGTSVYTVPVG--SLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75

Query: 94  AGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP 153
                 V+ WD      +              I   + +  +    +   +F        
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH-VFLFD 134

Query: 154 IMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRD 213
             T N         ++          R I                               
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 194

Query: 214 KKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH 273
            +  P G    S  G   I   N  +      F+          V    +V G+ + P  
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK----NVAHSGSVFGLTWSPDG 250

Query: 274 GTLATVGSEGTFSFWD 289
             +A+  ++ T   W+
Sbjct: 251 TKIASASADKTIKIWN 266

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 17/163 (10%), Positives = 44/163 (26%), Gaps = 13/163 (7%)

Query: 5   PALSTTTTTSTPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGS--WDNNVRCWEVE 62
           P+        +        V+     S +     P         AG    ++  +     
Sbjct: 203 PSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR---SMTSEAGEYDLNDMYKRSSPI 259

Query: 63  PNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM---AGCDKTVKCWDLASNQSMQVAQHDAP 119
                  + +  +   +L  +    G        A     +  +D+ + +   V +    
Sbjct: 260 NVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---VTEVKNN 316

Query: 120 VKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER 162
           +       + +   +M    D  +  + L  P+   T+   +R
Sbjct: 317 LTDLRL--SADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKR 357

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (109), Expect = 1e-06
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 70  KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ--HDAPVKTCHWIK 127
           +   G ++ +  ++   DG  +F A  +  +  WD+++  S +V    H   +       
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-- 63

Query: 128 APNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDY 170
             +   L T SWD  LK           +  +  +     +  
Sbjct: 64  -TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 105

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (109), Expect = 2e-06
 Identities = 33/299 (11%), Positives = 71/299 (23%), Gaps = 23/299 (7%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG 88
             +I+ ++ S        L +   + ++  W++   G +        +  +  +      
Sbjct: 12  NKAITALSSSAD---GKTLFSADAEGHINSWDIS-TGISNRVFPDVHATMITGIKTTSK- 66

Query: 89  TKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
             +F    D  +K      +           + +     A +    +  +          
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

Query: 149 RTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCI 208
                 + I+    C     D     VG     + +Y+L G      KT           
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186

Query: 209 AIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIV 268
                            +   VA  +         F                        
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV---------------S 231

Query: 269 FHPVHGTLATVGSEGTFSFWD--KDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325
           + P +  LAT   + +   W+  K +   +    A  MS     +  N      +   D
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV-SAGQD 289

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 5e-05
 Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 7/120 (5%)

Query: 33  SCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVF 92
              + + S    + +        +              S    +  V  V+W  D  ++ 
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 93  MAGCDKTVKCWDLASNQSMQV----AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
               D +V  W++       +    A   + V +  W    N T +++   D  +KFW++
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW---LNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.5 bits (82), Expect = 0.004
 Identities = 5/56 (8%), Positives = 14/56 (25%), Gaps = 2/56 (3%)

Query: 116 HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYP 171
           H+  +       + +   L +   +  +  WD+ T                 +   
Sbjct: 11  HNKAITALSS--SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 13/148 (8%), Positives = 45/148 (30%), Gaps = 23/148 (15%)

Query: 30  DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWI---- 85
             I+  A+S        L+  ++   +   ++         +++ ++E      W     
Sbjct: 195 FLINHPAYSQ---KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 251

Query: 86  ------DDGTKVFMAGCD----------KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAP 129
                     ++++              + V   D  + + +   +    + + +  +  
Sbjct: 252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDE 311

Query: 130 NYTCLMTGSWDKTLKFWDLRTPQPIMTI 157
                   + DKTL   D  + + + ++
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRSV 339

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 83  AWIDDGTKVFMAGCDKTVKCWDLASNQSMQ---VAQHDAPVKTCHWIKAPNYTCLMTGSW 139
               D  K    G D T++ WD+ +++ +Q   + +     +    +   N   +++ S 
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSL 316

Query: 140 DKTLKFWDL 148
           D TL F++L
Sbjct: 317 DGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 33/314 (10%), Positives = 73/314 (23%), Gaps = 24/314 (7%)

Query: 26  SPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQG-MSEPVLDVAW 84
           S   +  + +++ P+T              VRC +   +         G  S  V  V +
Sbjct: 14  STQRNFTTHLSYDPTT--NAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKF 71

Query: 85  --IDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ---------HDAPVKTCHWIKAPNYTC 133
             I     +        V  W    ++     +            P+    W       C
Sbjct: 72  SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 131

Query: 134 LMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQE 193
           ++    D    F    +   +  ++   +   A        + +   G     +  +   
Sbjct: 132 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 191

Query: 194 FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG 253
           F          +        +             G   I   +                 
Sbjct: 192 F--------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 243

Query: 254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK--PSEAMDMSISTCAL 311
                + +      +        ATVG++ T   WD      ++    +   +      +
Sbjct: 244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 303

Query: 312 NHNGQIFAYAVSYD 325
              G     ++S D
Sbjct: 304 VATGNGRIISLSLD 317

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 34  CMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM 93
              F+ S L          D  +R W+V  +      ++         V  +  G    +
Sbjct: 253 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312

Query: 94  AGC-DKTVKCWDL 105
           +   D T+  ++L
Sbjct: 313 SLSLDGTLNFYEL 325

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 38/289 (13%), Positives = 72/289 (24%), Gaps = 18/289 (6%)

Query: 23  EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDV 82
           +V+  PED               F +       +   + + + K +     G +  V   
Sbjct: 12  KVLVKPEDRPKKQLNDLDLP-NLFSVTLRDAGQIALVDGD-SKKIVKVIDTGYA--VHIS 67

Query: 83  AWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYT-----CLMTG 137
                G  + + G D  +   DL + +  +VA+    ++      +          +   
Sbjct: 68  RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127

Query: 138 SWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT 197
            W       D  T +P   ++         VD            I+      +     K 
Sbjct: 128 YWPPQFAIMDGETLEPKQIVS----TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

Query: 198 ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG 257
              +   N             A   L       + +Y   A    N        +     
Sbjct: 184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 243

Query: 258 VQDIYAVNGIV-----FHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA 301
           + D+             HP +G + +    G  S        K  P  A
Sbjct: 244 LVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA 292

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 29/288 (10%), Positives = 61/288 (21%), Gaps = 42/288 (14%)

Query: 29  EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG 88
              I+ +  +P       LI+GS+D  +  W             Q  S  ++ +      
Sbjct: 13  NKGITALTVNP-------LISGSYDGRIMEWSSS-------SMHQDHSNLIVSLDNSKAQ 58

Query: 89  TKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
               ++  D              Q     A       +   +   L+  S+   +     
Sbjct: 59  EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118

Query: 149 RTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCI 208
                               +     V       V + L+   +      S    +    
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178

Query: 209 AIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYA----- 263
           A     K          V+        +  N       +   +                 
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238

Query: 264 ----------------------VNGIVFHPVHGTLATVGSEGTFSFWD 289
                                 VN +++     TL + G++     W+
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 12/118 (10%), Positives = 32/118 (27%), Gaps = 3/118 (2%)

Query: 44  QYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKC 102
           Q   IA      +  W +   G      +  +   V  +    D   +++    +  V  
Sbjct: 4   QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63

Query: 103 WDLASNQSMQVAQHDAPV--KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN 158
           + +A +        ++ +     H         +  GS++              + + 
Sbjct: 64  YRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 22/168 (13%), Positives = 38/168 (22%), Gaps = 17/168 (10%)

Query: 23  EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG--KTIPKSMQGMSEPVL 80
           +V   PED  +        L   F +       +   +         +          V 
Sbjct: 12  KVHVAPEDRPTQQMNDW-DLENLFSVTLRDAGQIALIDGSTYEIKTVLD-----TGYAVH 65

Query: 81  DVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYT-----CLM 135
                  G  +F+ G D  V   DL   +   VA+     +      +          + 
Sbjct: 66  ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA 125

Query: 136 TGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIV 183
              W       D  T +P    +          D            I+
Sbjct: 126 GAYWPPQYVIMDGETLEPKKIQS----TRGMTYDEQEYHPEPRVAAIL 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.85
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.82
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.73
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.69
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.61
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.56
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.49
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.45
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.4
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.39
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.28
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.27
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.26
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.16
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.15
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.14
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.1
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.03
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.01
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.98
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.88
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.86
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.85
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.84
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.76
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.71
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.41
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.39
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.35
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.15
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.1
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.03
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.9
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.71
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.7
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.68
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.54
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.49
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.42
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.21
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.03
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.78
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.69
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.69
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.67
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	96.37
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.25
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.18
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.94
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.75
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.53
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.32
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.23
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.12
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.8
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.7
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.45
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.9
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.51
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.1
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.8

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-43  Score=293.11  Aligned_cols=281  Identities=17%  Similarity=0.295  Sum_probs=246.4

Q ss_pred             EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911         23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC  102 (356)
Q Consensus        23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  102 (356)
                      ..++||++.|++++|+|++   ++||+|+.||+|+|||+++  ......+.+|...|.+++|+|++.+++++..++.+.+
T Consensus        11 ~~L~GH~~~I~~l~~sp~~---~~l~s~s~Dg~i~iWd~~~--~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVF---SVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL   85 (317)
T ss_dssp             CEEECCSSCEEEEEECSSS---SEEEEEESSSCEEEEETTT--CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             EEEcCCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEECCC--CCEEEEEeCCCCcEEEEeeeccccccccccccccccc
Confidence            4688999999999999999   9999999999999999987  3455788999999999999999999999999999999


Q ss_pred             EEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEEEec
Q psy12911        103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVVGTA  178 (356)
Q Consensus       103 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  178 (356)
                      |+....+... ...|...+.++.|+  +++..+++++.|+.+++||+++++.+..+..+..   .+.+..++..+++++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  163 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIM--PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN  163 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccceeeecc--CCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeC
Confidence            9998877665 77899999999999  9999999999999999999999999999887653   4456667789999999


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCC----------------CCCCeEEEeecCCeEEEEEeCCCCCCC
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKK----------------KQPAGYGLGSVEGRVAIQYVNPANPKD  242 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~~~~~~~~~~~dg~i~i~~~~~~~~~~  242 (356)
                      |+.|++|++.........  ..+...+.+++++|+..                ..+..+++++.|+.+++|+++..  +.
T Consensus       164 d~~v~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--~~  239 (317)
T d1vyhc1         164 DQTVRVWVVATKECKAEL--REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--MC  239 (317)
T ss_dssp             TSCEEEEETTTCCEEEEE--CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT--EE
T ss_pred             CCeEEEEeeccceeeEEE--ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC--cE
Confidence            999999999887543322  24566778888877632                12457899999999999999766  66


Q ss_pred             cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911        243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                      +.++.+|..           .|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++++|++|+
T Consensus       240 ~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         240 LMTLVGHDN-----------WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             EEEEECCSS-----------CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred             EEEEeCCCC-----------CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            788888887           899999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccC
Q psy12911        323 SYD  325 (356)
Q Consensus       323 ~~d  325 (356)
                      .|+
T Consensus       309 ~Dg  311 (317)
T d1vyhc1         309 VDQ  311 (317)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-43  Score=296.37  Aligned_cols=277  Identities=14%  Similarity=0.235  Sum_probs=231.9

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCce---eeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKT---IPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      +.+..+ .|...|+|++|+|++   ++||+|+ ||.|+|||+......   ......+|.+.|.+++|+|++++|++++.
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g---~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~  117 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPT---RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE  117 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSS---SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred             eEEEEC-CCCCcEEEEEECCCC---CEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec
Confidence            334445 799999999999999   9999997 899999999764321   22234579999999999999999999999


Q ss_pred             CCeEEEEEcCCCce--ee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCC
Q psy12911         97 DKTVKCWDLASNQS--MQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDY  170 (356)
Q Consensus        97 dg~i~vwd~~~~~~--~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~  170 (356)
                      ||.|++||+.....  .. +..|...+..+.|+  +++.++++++.|+.|++||+.+++.......+..   .++++..+
T Consensus       118 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~  195 (337)
T d1gxra_         118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAIS--PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             SSEEEEEECCCC--EEEEEEECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             ccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999876543  22 66789999999999  9999999999999999999999988887776543   34455677


Q ss_pred             CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeec
Q psy12911        171 PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHR  250 (356)
Q Consensus       171 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  250 (356)
                      ..+++++.|+.+++||++++.....   ..+...+.+++++|+    +..+++++.++.+++|+++...   ......|.
T Consensus       196 ~~~~~~~~d~~v~i~d~~~~~~~~~---~~~~~~i~~l~~~~~----~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~  265 (337)
T d1gxra_         196 TKLWTGGLDNTVRSWDLREGRQLQQ---HDFTSQIFSLGYCPT----GEWLAVGMESSNVEVLHVNKPD---KYQLHLHE  265 (337)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEECTT----SSEEEEEETTSCEEEEETTSSC---EEEECCCS
T ss_pred             cccccccccccccccccccceeecc---cccccceEEEEEccc----ccccceeccccccccccccccc---cccccccc
Confidence            8999999999999999988753322   235678999999999    7899999999999999997652   33455565


Q ss_pred             CCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      .           .|++++|+|++++|++++.||.|++||+.+++.+..+. |.+.|++++|+|++++|++|+.|.
T Consensus       266 ~-----------~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~  328 (337)
T d1gxra_         266 S-----------CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             S-----------CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTS
T ss_pred             c-----------ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCC
Confidence            5           89999999999999999999999999999998887765 788999999999999999998654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-42  Score=292.20  Aligned_cols=278  Identities=19%  Similarity=0.282  Sum_probs=227.8

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceee----------------eeeccCCcceeEEEEccCCCe
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIP----------------KSMQGMSEPVLDVAWIDDGTK   90 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~----------------~~~~~~~~~v~~~~~s~~~~~   90 (356)
                      +|++.|+||+|+|+|   ++||+|+ |+.|+|||+.++.....                .....|...|++++|+|++++
T Consensus        60 ~H~~~V~~l~fs~dg---~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          60 DHTSVVCCVKFSNDG---EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             ECSSCCCEEEECTTS---SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             CCCCcEEEEEECCCC---CEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            699999999999999   9999987 89999999987332110                122357778999999999999


Q ss_pred             EEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEe--
Q psy12911         91 VFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCAD--  167 (356)
Q Consensus        91 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--  167 (356)
                      |++|+.||.|++||...++... ..+|...|.++.++  +++..+++++.++.+++||+++.........+....++.  
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  213 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF--PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS  213 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred             ceecccccccccccccccccccccccccccccccccc--cccccccccccceeeeeeecccccccccccccccccccccc
Confidence            9999999999999999988776 77899999999999  999999999999999999999988887777766544433  


Q ss_pred             -cCCCeEEEEecCCeEEEEeCCCCcccccc-----ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911        168 -VDYPLAVVGTAGRGIVLYQLEGKPQEFKK-----TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK  241 (356)
Q Consensus       168 -~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~  241 (356)
                       .++..+++++.|+.|++||.++.......     ....+...|.+++|+|+    +..+++++.|+.+++||+......
T Consensus       214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~  289 (388)
T d1erja_         214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD----GQSVVSGSLDRSVKLWNLQNANNK  289 (388)
T ss_dssp             STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT----SSEEEEEETTSEEEEEEC------
T ss_pred             CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCC----CCEEEEEECCCcEEEEeccCCccc
Confidence             34568999999999999999887543222     12346678999999999    789999999999999998654321


Q ss_pred             ----------CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEE-
Q psy12911        242 ----------DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCA-  310 (356)
Q Consensus       242 ----------~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-  310 (356)
                                .......|..           .|.+++|+|++++|++|+.||.|++||+.+++++.++++|.+.|.+++ 
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~  358 (388)
T d1erja_         290 SDSKTPNSGTCEVTYIGHKD-----------FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV  358 (388)
T ss_dssp             ---------CEEEEEECCSS-----------CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             cccccccccceeeecccccc-----------eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEE
Confidence                      1222333444           899999999999999999999999999999999999999999999987 


Q ss_pred             -----ECCCCCEEEEEeccC
Q psy12911        311 -----LNHNGQIFAYAVSYD  325 (356)
Q Consensus       311 -----~s~~~~~l~~~s~~d  325 (356)
                           |+|++++||+|+.|.
T Consensus       359 ~~~~~~spd~~~l~s~s~Dg  378 (388)
T d1erja_         359 ANGSSLGPEYNVFATGSGDC  378 (388)
T ss_dssp             CSSCTTCTTCEEEEEEETTS
T ss_pred             ecCcccCCCCCEEEEEeCCC
Confidence                 467999999998765

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-41  Score=280.31  Aligned_cols=283  Identities=16%  Similarity=0.205  Sum_probs=232.9

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      ....+..++++||.+.|++++|+|++   ++||+|+.||+|+|||+.+  ......+..|..+|.+++|+|+++++++++
T Consensus        42 ~~~~~~~~tL~GH~~~I~~l~~s~~~---~~l~sgs~Dg~v~iWd~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  116 (340)
T d1tbga_          42 RIQMRTRRTLRGHLAKIYAMHWGTDS---RLLVSASQDGKLIIWDSYT--TNKVHAIPLRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             CCCCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTTEEEEEETTT--TEEEEEEECSCSCEEEEEECTTSSEEEEEE
T ss_pred             ccceeeeEEECCCCCCEEEEEECCCC---CEEEEEECCCceeeeeccc--ceeEEEEecccccEEeeEeeccceeeeeec
Confidence            34456778899999999999999999   9999999999999999987  345578889999999999999999999999


Q ss_pred             CCCeEEEEEcCCCcee-----eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEe
Q psy12911         96 CDKTVKCWDLASNQSM-----QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCAD  167 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~  167 (356)
                      .|+.+.+|+.......     .+.+|..........   .+..+.....+.....++...............   .....
T Consensus       117 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (340)
T d1tbga_         117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA  193 (340)
T ss_dssp             TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE---ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             ccceeecccccccccccccceecccccccccccccc---cccccccccccccccccccccccccccccccceeEeeeccc
Confidence            9999999998765432     245666666666554   456788888899999999877765555554432   33444


Q ss_pred             cCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee-
Q psy12911        168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF-  246 (356)
Q Consensus       168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~-  246 (356)
                      .....+++++.|+.|++||++++......  ..|...|.+++|+|+    +..+++++.|+.+++|+++...  ....+ 
T Consensus       194 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~--~~h~~~i~~v~~~p~----~~~l~s~s~d~~i~~~~~~~~~--~~~~~~  265 (340)
T d1tbga_         194 PDTRLFVSGACDASAKLWDVREGMCRQTF--TGHESDINAICFFPN----GNAFATGSDDATCRLFDLRADQ--ELMTYS  265 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTTEEEEEE--CCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTTE--EEEEEC
T ss_pred             cccceeEEeecCceEEEEECCCCcEEEEE--eCCCCCeEEEEECCC----CCEEEEEeCCCeEEEEeecccc--cccccc
Confidence            55678999999999999999887543322  357788999999999    7899999999999999997653  22222 


Q ss_pred             -eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        247 -KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       247 -~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                       ..+..           .|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.++|++++|+|++++|++|+.|.
T Consensus       266 ~~~~~~-----------~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg  334 (340)
T d1tbga_         266 HDNIIC-----------GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             CTTCCS-----------CEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             cccccC-----------ceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCC
Confidence             22222           799999999999999999999999999999999999999999999999999999999998654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.8e-40  Score=272.05  Aligned_cols=280  Identities=11%  Similarity=0.066  Sum_probs=220.0

Q ss_pred             CCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEc
Q psy12911         26 SPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL  105 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  105 (356)
                      ..+++.+.+++++|+|   +.|+.++ ++.|.+|++++  ......+.+|...|++++|+|+|++|++|+.||+|++||+
T Consensus        14 ~~~r~~~~~~a~~~~g---~~l~~~~-~~~v~i~~~~~--~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~   87 (311)
T d1nr0a1          14 RTARGTAVVLGNTPAG---DKIQYCN-GTSVYTVPVGS--LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT   87 (311)
T ss_dssp             CCCTTCCCCCEECTTS---SEEEEEE-TTEEEEEETTC--SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEES
T ss_pred             CCCCCCeEEEEEcCCC---CEEEEEe-CCEEEEEECCC--CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeee
Confidence            3455677789999999   8888886 66899999987  3444678899999999999999999999999999999999


Q ss_pred             CCCcee---eecccCCCeeEEEEEeCCCCCeEEEEECC--CeEEEEeCCCCCceEEEeCCCe-e--EEEecCCC-eEEEE
Q psy12911        106 ASNQSM---QVAQHDAPVKTCHWIKAPNYTCLMTGSWD--KTLKFWDLRTPQPIMTINLPER-C--YCADVDYP-LAVVG  176 (356)
Q Consensus       106 ~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~-~--~~~~~~~~-~~~~~  176 (356)
                      .+++..   .+..|..+|.+++|+  +++++|++++.+  ..+++|++.+++....+..+.. +  ++++++++ .++++
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~v~~s--~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sg  165 (311)
T d1nr0a1          88 TQTTHILKTTIPVFSGPVKDISWD--SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG  165 (311)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEEC--TTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred             eccccccccccccccCcccccccc--ccccccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            987643   267799999999999  999999999864  5699999999998888876653 3  34455566 47789


Q ss_pred             ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG  256 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (356)
                      +.|+.|++||+++.....  ....+...+.++.++|+    +..+++++.|+.+++|++....  ....+.....    .
T Consensus       166 s~d~~i~i~d~~~~~~~~--~~~~~~~~i~~v~~~p~----~~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~----~  233 (311)
T d1nr0a1         166 SDDNTVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPD----GSLFASTGGDGTIVLYNGVDGT--KTGVFEDDSL----K  233 (311)
T ss_dssp             ETTSCEEEEETTTBEEEE--EECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCC--EEEECBCTTS----S
T ss_pred             cccccccccccccccccc--ccccccccccccccCcc----cccccccccccccccccccccc--cccccccccc----c
Confidence            999999999999865432  23356788999999999    8899999999999999997653  2222221110    0


Q ss_pred             CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCcc-ceEEEEECCCCCEEEEEeccC
Q psy12911        257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDM-SISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ...|...|++++|+|++++|++|+.||.|+|||++++++++++..|.. ....+.+.+++++|++++.|+
T Consensus       234 ~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG  303 (311)
T d1nr0a1         234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG  303 (311)
T ss_dssp             SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred             cccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCC
Confidence            111122899999999999999999999999999999999888876643 223334444566799888654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.1e-39  Score=264.81  Aligned_cols=278  Identities=12%  Similarity=0.086  Sum_probs=214.2

Q ss_pred             ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      ..++++||.+.|++++|+|++   ++|++|+.||+|++||++++ ........+|...|++++|+|+++ +++++.|+.+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg---~~l~s~s~Dg~v~vWd~~~~-~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v   78 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADG---KTLFSADAEGHINSWDISTG-ISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHL   78 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTC-CEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEE
T ss_pred             cceEcCCCCCCcEEEEECCCC---CEEEEEcCCCeEEEEECCCC-cEEEEEcCCCCCcEEEEEeeccce-eecccceeeE
Confidence            467899999999999999999   99999999999999999873 333233357999999999999986 5566679999


Q ss_pred             EEEEcCCCceee----ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE-eCCCeeEEEecCCCeEEE
Q psy12911        101 KCWDLASNQSMQ----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI-NLPERCYCADVDYPLAVV  175 (356)
Q Consensus       101 ~vwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  175 (356)
                      ++|+........    ...+...+.+++|+  +++.++++++ ++.+++|+...  ..... ......+++++++..+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~g~~~~~~~-~~~i~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVS--ADGDIAVAAC-YKHIAIYSHGK--LTEVPISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEEC--TTSSCEEEEE-SSEEEEEETTE--EEEEECSSCEEEEEECTTSCEEEE
T ss_pred             EEeccCCccccccccccccccccccccccc--cccccccccc-ccccccccccc--cccccccccccccccccccccccc
Confidence            999987654322    34577889999999  8988777665 57899998532  22222 223356677778889999


Q ss_pred             EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC-CCCcceeeeecCCCC
Q psy12911        176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN-PKDNFTFKCHRSNGG  254 (356)
Q Consensus       176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~~~~~  254 (356)
                      ++.|+.|++||+++..... .....+...+.+++++|+    +.++++++.++.+++|++.... ......+.+|..   
T Consensus       154 g~~dg~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~----~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~---  225 (299)
T d1nr0a2         154 GGQDSKVHVYKLSGASVSE-VKTIVHPAEITSVAFSNN----GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA---  225 (299)
T ss_dssp             EETTSEEEEEEEETTEEEE-EEEEECSSCEEEEEECTT----SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS---
T ss_pred             ccccccccccccccccccc-cccccccccccccccccc----ccccccccccccccccccccccccccccccccccc---
Confidence            9999999999998764322 222346788999999999    7899999999999999986542 223445566665   


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC--CCCCC-ccceEEEEECCCCCEEEEEeccC
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK--PSEAM-DMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~-~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                              +|++++|+|++++|++|+.||.|++||++++....  ....| ...|.++.| +++++|++++.|.
T Consensus       226 --------~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~  290 (299)
T d1nr0a2         226 --------KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDS  290 (299)
T ss_dssp             --------CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTS
T ss_pred             --------ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCC
Confidence                    89999999999999999999999999998764332  23334 445666654 6678999988654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.6e-40  Score=276.61  Aligned_cols=238  Identities=14%  Similarity=0.215  Sum_probs=199.3

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS  107 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  107 (356)
                      +.++|+|++|+|++   ++||+|+.||.|+|||++.+.......+.+|.++|.+++|+|++++|++++.|++|++||+.+
T Consensus         6 ~~~pIt~~~~s~dg---~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHAWNKDR---TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEEECTTS---SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCCCeEEEEECCCC---CEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence            34789999999999   999999999999999998755556678899999999999999999999999999999999987


Q ss_pred             Cceee---ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEE
Q psy12911        108 NQSMQ---VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVL  184 (356)
Q Consensus       108 ~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  184 (356)
                      +....   +.+|...|.+++|+  |+++.|++++.|+.|++|++..........                          
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~--p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~--------------------------  134 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWA--PNEKKFAVGSGSRVISICYFEQENDWWVCK--------------------------  134 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEEC--TTSSEEEEEETTSSEEEEEEETTTTEEEEE--------------------------
T ss_pred             cccccccccccccccccccccc--cccccceeecccCcceeeeeeccccccccc--------------------------
Confidence            76432   56789999999999  999999999999999999987655433321                          


Q ss_pred             EeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC----------------Ccceeee
Q psy12911        185 YQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK----------------DNFTFKC  248 (356)
Q Consensus       185 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~----------------~~~~~~~  248 (356)
                                 .....+...+.+++|+|+    +.++++|+.|+.+++|+.......                .......
T Consensus       135 -----------~~~~~~~~~v~~v~~~p~----~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (371)
T d1k8kc_         135 -----------HIKKPIRSTVLSLDWHPN----SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS  199 (371)
T ss_dssp             -----------EECTTCCSCEEEEEECTT----SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred             -----------cccccccccccccccccc----ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccC
Confidence                       111235667889999998    788999999999999987543211                1112223


Q ss_pred             ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911        249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                      |.           ..|.+++|+|++++|++++.|+.|++||+.+++.+..+..|..+|.+++|+||+++|++|+
T Consensus       200 ~~-----------~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~  262 (371)
T d1k8kc_         200 SC-----------GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH  262 (371)
T ss_dssp             CS-----------SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET
T ss_pred             cc-----------CcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc
Confidence            33           3799999999999999999999999999999999999999999999999999999988765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.9e-39  Score=264.09  Aligned_cols=254  Identities=16%  Similarity=0.209  Sum_probs=209.0

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      ........+.+|.+.|++++|+|+|   ++||+|+.||+|+|||+..........+..|..+|.+++|+|++++|++++.
T Consensus        46 ~~~~~~~~~~~H~~~v~~~~~sp~g---~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~  122 (311)
T d1nr0a1          46 GSLTDTEIYTEHSHQTTVAKTSPSG---YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGE  122 (311)
T ss_dssp             TCSSCCEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEEC
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCC---CeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccc
Confidence            3456667789999999999999999   9999999999999999998655555678889999999999999999999876


Q ss_pred             --CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCe-EEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecC
Q psy12911         97 --DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTC-LMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVD  169 (356)
Q Consensus        97 --dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~  169 (356)
                        +..+++|++++++... +.+|...|.+++|+  |++++ |++|+.|+.|++||+++++....+..+..   .+.++++
T Consensus       123 ~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~--~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~  200 (311)
T d1nr0a1         123 GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK--PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD  200 (311)
T ss_dssp             CSSCSEEEEETTTCCBCBCCCCCSSCEEEEEEC--SSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccccccccc--ccceeeecccccccccccccccccccccccccccccccccccCcc
Confidence              4669999999988766 77899999999999  88775 88899999999999999998888877653   4556667


Q ss_pred             CCeEEEEecCCeEEEEeCCCCcccccc-----ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKK-----TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF  244 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  244 (356)
                      ++.+++++.|+.|++||++.+......     ....|...|.+++|+|+    +.+|++|+.||.|+|||++..  +.+.
T Consensus       201 ~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~----~~~l~tgs~Dg~v~iwd~~t~--~~~~  274 (311)
T d1nr0a1         201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD----GTKIASASADKTIKIWNVATL--KVEK  274 (311)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT----SSEEEEEETTSEEEEEETTTT--EEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccCCC----CCEEEEEeCCCeEEEEECCCC--cEEE
Confidence            789999999999999999876532221     12246678999999999    789999999999999999765  5666


Q ss_pred             eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911        245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      ++..+....        ..+.++.|  ++.+|++++.||.|++||.+
T Consensus       275 ~l~~~~~~~--------~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         275 TIPVGTRIE--------DQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEECCSSGG--------GCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             EEECCCCcc--------ceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            776654310        03444444  56789999999999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-38  Score=263.79  Aligned_cols=301  Identities=24%  Similarity=0.370  Sum_probs=223.7

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCce-eeeeeccCCcceeEEEEccCC-CeEEEEcCC
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKT-IPKSMQGMSEPVLDVAWIDDG-TKVFMAGCD   97 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d   97 (356)
                      +.++++++|++.|++|+|+|++   ++||+|+.||+|+|||++..... ......+|..+|.+++|+|++ .+|++|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~---~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d   78 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSK---SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGG---TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             CeEEcCCCCCCCEEEEEEeCCC---CEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence            5678899999999999999999   99999999999999999874332 223344699999999999864 578999999


Q ss_pred             CeEEEEEcCCCceee-ecccCC-CeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC---------CCeeEEE
Q psy12911         98 KTVKCWDLASNQSMQ-VAQHDA-PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL---------PERCYCA  166 (356)
Q Consensus        98 g~i~vwd~~~~~~~~-~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~  166 (356)
                      +.|++|++..+.... ...+.. ......+.  ++...+++++.++.+++||++++........         ......+
T Consensus        79 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQALTNNEANLGICRICK--YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM  156 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCCCCSCEEEEEE--ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred             cceeeeecccccccccccccccccccccccc--cccccccccccccccceeeccccccceeeecccccccccceeeeeee
Confidence            999999998877665 333333 33444444  7788999999999999999877654333221         1235667


Q ss_pred             ecCCCeEEEEecCCeEEEEeCCCCcccccc-ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCC---
Q psy12911        167 DVDYPLAVVGTAGRGIVLYQLEGKPQEFKK-TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKD---  242 (356)
Q Consensus       167 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~---  242 (356)
                      ...+..+++++.|+.|++||++........ ..........+..+.+..   +..+++++.||.+.+|+++......   
T Consensus       157 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~~v~~~~~~~~~~~~~  233 (342)
T d1yfqa_         157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE---QEGYACSSIDGRVAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG---GCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred             eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCC---CCEEEeecCCCeEEEEEecCCcceeecc
Confidence            778889999999999999999876533222 122334455566665542   6789999999999999986543211   


Q ss_pred             -cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEE
Q psy12911        243 -NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       243 -~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                       ...+..+..  ......+.+.+++++|+|++++||+|+.||.|++||+.+++++..+..+ ..+..++|+|++++|++|
T Consensus       234 ~~~~~~~~~~--~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a  310 (342)
T d1yfqa_         234 KRFAFRCHRL--NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLA  310 (342)
T ss_dssp             TCEEEECCCC--CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEE
T ss_pred             ccceeeeeee--ccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEE
Confidence             111222211  1222334458999999999999999999999999999999998888643 345567889999999999


Q ss_pred             eccCCcCCCc
Q psy12911        322 VSYDWSKGHE  331 (356)
Q Consensus       322 s~~d~~~~~~  331 (356)
                      ++||+.+...
T Consensus       311 ~sdd~~~~~~  320 (342)
T d1yfqa_         311 TSDDTFKTNA  320 (342)
T ss_dssp             EECTHHHHCS
T ss_pred             EcCCcEEEee
Confidence            9999655443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=258.91  Aligned_cols=241  Identities=13%  Similarity=0.147  Sum_probs=210.7

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  103 (356)
                      ...+|.+.|.+++|+|++   ++|++|+.||.|++||+..........+..|...|.+++|+|++.++++++.|+.|++|
T Consensus        92 ~~~~h~~~I~~v~~s~dg---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~  168 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLPDG---CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW  168 (337)
T ss_dssp             ECSCTTSBEEEEEECTTS---SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eecCCCCcEEEEEEcCCC---CEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456899999999999999   99999999999999999875556667788899999999999999999999999999999


Q ss_pred             EcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEE--ecCCCeEEEEecCC
Q psy12911        104 DLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCA--DVDYPLAVVGTAGR  180 (356)
Q Consensus       104 d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~  180 (356)
                      ++.+++... ...|...|.+++|+  +++..+++++.|+.|++||+++++.+..+.....+.++  ++.+..+++++.++
T Consensus       169 ~~~~~~~~~~~~~~~~~v~~l~~s--~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~  246 (337)
T d1gxra_         169 DLHNQTLVRQFQGHTDGASCIDIS--NDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS  246 (337)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccccccccccc--ccccccccccccccccccccccceeecccccccceEEEEEcccccccceecccc
Confidence            999988776 67799999999999  99999999999999999999999999888877766554  45667999999999


Q ss_pred             eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCccc
Q psy12911        181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQD  260 (356)
Q Consensus       181 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      .+++||++.....   ....+...+.+++|+|+    +..+++++.||.|++||+...  +.+..+. |..         
T Consensus       247 ~i~i~d~~~~~~~---~~~~~~~~i~~v~~s~~----g~~l~s~s~Dg~i~iwd~~~~--~~~~~~~-~~~---------  307 (337)
T d1gxra_         247 NVEVLHVNKPDKY---QLHLHESCVLSLKFAYC----GKWFVSTGKDNLLNAWRTPYG--ASIFQSK-ESS---------  307 (337)
T ss_dssp             CEEEEETTSSCEE---EECCCSSCEEEEEECTT----SSEEEEEETTSEEEEEETTTC--CEEEEEE-CSS---------
T ss_pred             ccccccccccccc---cccccccccceEEECCC----CCEEEEEeCCCeEEEEECCCC--CEEEEcc-CCC---------
Confidence            9999999887543   22356788999999999    789999999999999999765  4444443 444         


Q ss_pred             ccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        261 IYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       261 ~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                        .|.+++|+|++++|++|+.||+|+|||+
T Consensus       308 --~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         308 --SVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             --CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             --CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence              7999999999999999999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-37  Score=254.24  Aligned_cols=279  Identities=16%  Similarity=0.209  Sum_probs=212.9

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      .+.+...+++||.+.|.+ +++++|   ++||||+.||+|+|||+.+  ..+...+.+|...|.+++|+++  +|++++.
T Consensus         4 ~~~~~~~~l~GH~~~V~s-~~~~~g---~~l~sgs~Dg~i~vWd~~~--~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~   75 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVIT-CLQFCG---NRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQMRDN--IIISGST   75 (342)
T ss_dssp             SCCCCCEEEECSTTSCEE-EEEEET---TEEEEEETTSCEEEEETTT--CCEEEECCCCSSCEEEEEEETT--EEEEEET
T ss_pred             CCCCcCEEECCcCCceEE-EEEECC---CEEEEEeCCCeEEEEECCC--CCEEEEEeCCCCCEEEEEeCCC--cccccee
Confidence            345677889999999865 366678   8999999999999999987  3455789999999999999874  8999999


Q ss_pred             CCeEEEEEcCCCceee-ecccCCCe--------------------------------------eEEEEEeCCCCCeEEEE
Q psy12911         97 DKTVKCWDLASNQSMQ-VAQHDAPV--------------------------------------KTCHWIKAPNYTCLMTG  137 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~-~~~~~~~v--------------------------------------~~~~~~~~~~~~~l~~~  137 (356)
                      |+.+++|+........ ...+...+                                      ......  .....++++
T Consensus        76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  153 (342)
T d2ovrb2          76 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ--YDGRRVVSG  153 (342)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE--ECSSCEEEE
T ss_pred             cccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeec--cccceeeee
Confidence            9999999987654322 11111111                                      111222  445678888


Q ss_pred             ECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCC
Q psy12911        138 SWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKK  216 (356)
Q Consensus       138 ~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  216 (356)
                      +.|+.|++||++..+.+..+..+. ......+++..+++++.|+.|++||++.......  ...+...+.++++++    
T Consensus       154 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~----  227 (342)
T d2ovrb2         154 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT--LTGHQSLTSGMELKD----  227 (342)
T ss_dssp             ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEE--ECCCCSCEEEEEEET----
T ss_pred             cCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeE--ecccccceeEEecCC----
Confidence            999999999998888888887655 4667778889999999999999999988754322  224556677776654    


Q ss_pred             CCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceec
Q psy12911        217 QPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKL  296 (356)
Q Consensus       217 ~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  296 (356)
                        .++++++.|+.|++|++...  +....+..+..        +...+.++.+  +++++++|+.||+|++||+++++.+
T Consensus       228 --~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~--------~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i  293 (342)
T d2ovrb2         228 --NILVSGNADSTVKIWDIKTG--QCLQTLQGPNK--------HQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFI  293 (342)
T ss_dssp             --TEEEEEETTSCEEEEETTTC--CEEEEECSTTS--------CSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             --CEEEEEcCCCEEEEEecccc--cccccccccce--------eeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEE
Confidence              48999999999999999765  33444443322        1115666666  4679999999999999999999887


Q ss_pred             CCC-----CCCccceEEEEECCCCCEEEEEeccC
Q psy12911        297 KPS-----EAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       297 ~~~-----~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +.+     .+|.+.|++++|+|++.+||+|+.|+
T Consensus       294 ~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG  327 (342)
T d2ovrb2         294 RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  327 (342)
T ss_dssp             EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             EEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            655     35778899999999999999998765

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-36  Score=250.07  Aligned_cols=269  Identities=15%  Similarity=0.203  Sum_probs=197.0

Q ss_pred             eEEeCCCCCCe-eEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         22 FEVVSPPEDSI-SCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        22 ~~~~~~h~~~V-~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      ..+++||.+.| +|++|  ++   ++||+|+.||+|+|||+.+  ...+..+.+|.++|++++|+|+ .+|++|+.|++|
T Consensus         5 ~~tL~GH~~~vitc~~~--~~---~~l~tgs~Dg~i~vWd~~~--~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i   76 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--ED---NYVITGADDKMIRVYDSIN--KKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTV   76 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ET---TEEEEEETTTEEEEEETTT--TEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCE
T ss_pred             cEEECCcCCCcEEEEEE--CC---CEEEEEeCCCeEEEEECCC--CcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccc
Confidence            55789999886 66655  56   8999999999999999987  4566889999999999999986 589999999999


Q ss_pred             EEEEcCCCceeee-cc--cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceE----------------------
Q psy12911        101 KCWDLASNQSMQV-AQ--HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIM----------------------  155 (356)
Q Consensus       101 ~vwd~~~~~~~~~-~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------  155 (356)
                      ++|++...+.... ..  +........+.  +++..+++++.|+.|++||+++...+.                      
T Consensus        77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEY--KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEEE--TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             ccccccccccccccccccccccccccccc--cccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            9999998876542 22  22233444455  777888888888888888876543211                      


Q ss_pred             -----------------------------------------EEeCCC---eeEEEecCCCeEEEEecCCeEEEEeCCCCc
Q psy12911        156 -----------------------------------------TINLPE---RCYCADVDYPLAVVGTAGRGIVLYQLEGKP  191 (356)
Q Consensus       156 -----------------------------------------~~~~~~---~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  191 (356)
                                                               ....+.   ....+++.+..+++++.|+.|++||++++.
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  234 (355)
T d1nexb2         155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  234 (355)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred             eeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc
Confidence                                                     111111   123344455677888888888888887765


Q ss_pred             cccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEE-EEe
Q psy12911        192 QEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGI-VFH  270 (356)
Q Consensus       192 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-~~s  270 (356)
                      ....  ...|...+.+++++++      .+++++.||.|++||++..    ...+..|..           .+.++ .++
T Consensus       235 ~~~~--~~~h~~~v~~~~~~~~------~l~~~~~dg~i~iwd~~~~----~~~~~~~~~-----------~~~~~~~~~  291 (355)
T d1nexb2         235 LMYT--LQGHTALVGLLRLSDK------FLVSAAADGSIRGWDANDY----SRKFSYHHT-----------NLSAITTFY  291 (355)
T ss_dssp             EEEE--ECCCSSCCCEEEECSS------EEEEECTTSEEEEEETTTC----CEEEEEECT-----------TCCCCCEEE
T ss_pred             cccc--cccccccccccccccc------eeeeeeccccccccccccc----ceecccccC-----------CceEEEEEc
Confidence            4322  2346778888888654      8999999999999999754    345566655           45544 567


Q ss_pred             CCCCEEEEEcCCCeEEEEEcCcceecC-CCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        271 PVHGTLATVGSEGTFSFWDKDARTKLK-PSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       271 p~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      +++.+|++| .||.|+|||+++++++. .+.+|.+.|++++|+|+ .++++++.|+
T Consensus       292 ~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg  345 (355)
T d1nexb2         292 VSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDG  345 (355)
T ss_dssp             ECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSS
T ss_pred             CCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCC
Confidence            777777766 58999999999999885 56789999999999987 4666666554

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-35  Score=241.32  Aligned_cols=264  Identities=15%  Similarity=0.200  Sum_probs=214.4

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      +++++++||.++|++++|+|       |++|+.||+|++||+.+       ...+|...|.++++++++ .+++++.|++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~-------l~sgs~Dg~v~~Wd~~~-------~~~~h~~~V~~~~~~~~~-~~~s~s~D~~   68 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP-------LISGSYDGRIMEWSSSS-------MHQDHSNLIVSLDNSKAQ-EYSSISWDDT   68 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT-------TEEEETTSCEEETTTTE-------EECCCCSCEEEEECCSTT-CCEEEETTTE
T ss_pred             ceeEEECCCCCceEEEEECc-------EEEEeCCCeEEEEECCC-------CCCCCCCCEEEEEecCCC-eEEEEeeccc
Confidence            56789999999999999975       89999999999999865       135799999999998764 6899999999


Q ss_pred             EEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecC
Q psy12911        100 VKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAG  179 (356)
Q Consensus       100 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  179 (356)
                      |++|++...+      ....+..+.++  +++..+++ +.++.+.+|+..+++.+..+.......++.+.+..+++++.+
T Consensus        69 v~~w~~~~~~------~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  139 (287)
T d1pgua2          69 LKVNGITKHE------FGSQPKVASAN--NDGFTAVL-TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEE  139 (287)
T ss_dssp             EEETTEEEEE------CSSCEEEEEEC--SSSEEEEE-ETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred             cccccccccc------cccceeeeeec--cCCceEEE-eecccceeeeccceeeeeeccccceeeeeeccCcceeeeccc
Confidence            9999976432      34557778887  77765555 556789999999999999999888888999999988888877


Q ss_pred             C-eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCc
Q psy12911        180 R-GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGV  258 (356)
Q Consensus       180 ~-~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (356)
                      + .+++|++....... .....+...+++++|+|+    +.++++++.||.|++||+..... ....+.+|..       
T Consensus       140 ~~~v~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~----~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~h~~-------  206 (287)
T d1pgua2         140 GNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPS----ETYIAAGDVMGKILLYDLQSREV-KTSRWAFRTS-------  206 (287)
T ss_dssp             TSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTTEE-EECCSCCCSS-------
T ss_pred             cceeeeeeccccceee-eeeeccCCceeEEEeccC----ccccccccccccccceeeccccc-cccccccccc-------
Confidence            5 79999997654332 233456778999999999    78999999999999999976531 1223456665       


Q ss_pred             ccccceEEEEEeCC----------CCEEEEEcCCCeEEEEEcCc-ceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        259 QDIYAVNGIVFHPV----------HGTLATVGSEGTFSFWDKDA-RTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       259 ~~~~~i~~i~~sp~----------~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                          +|.+++|+|.          +.+|++|+.|++|+|||+++ ++.+..+.+|.+.|++++|+|+++ |++++.|.
T Consensus       207 ----~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~  279 (287)
T d1pgua2         207 ----KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA  279 (287)
T ss_dssp             ----CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTS
T ss_pred             ----ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCC
Confidence                8999999874          46899999999999999876 556777889999999999999874 77777654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-34  Score=246.33  Aligned_cols=244  Identities=20%  Similarity=0.297  Sum_probs=201.4

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD  104 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  104 (356)
                      ..+|...|++++|+|++   ++|++|+.||.|++|+...  ......+.+|...|.+++|++++..+++++.++.+++||
T Consensus       117 ~~~~~~~V~~l~~s~~~---~~l~s~~~dg~v~i~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d  191 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDG---KFLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD  191 (388)
T ss_dssp             --CCCCBEEEEEECTTS---SEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCCCCCEEEEEECCCC---Ccceecccccccccccccc--cccccccccccccccccccccccccccccccceeeeeee
Confidence            34688899999999999   9999999999999999987  455577888999999999999999999999999999999


Q ss_pred             cCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC--------Ce--eEEEecCCCeEE
Q psy12911        105 LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP--------ER--CYCADVDYPLAV  174 (356)
Q Consensus       105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~  174 (356)
                      ..+........+.....++.+.+ +++.+|++++.||.|++||++++..+..+...        ..  .+.+++++..++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  270 (388)
T d1erja_         192 LRTGQCSLTLSIEDGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV  270 (388)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccccccC-CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEE
Confidence            99988877666666777777774 68899999999999999999999887776532        12  345566778999


Q ss_pred             EEecCCeEEEEeCCCCccccc----------cccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFK----------KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF  244 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  244 (356)
                      +++.|+.|++||++.......          .....+...+.+++|+|+    +.++++|+.||.|++||++..  +.+.
T Consensus       271 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~sg~~dg~i~vwd~~~~--~~~~  344 (388)
T d1erja_         271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN----DEYILSGSKDRGVLFWDKKSG--NPLL  344 (388)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG----GCEEEEEETTSEEEEEETTTC--CEEE
T ss_pred             EEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCC----CCEEEEEeCCCEEEEEECCCC--cEEE
Confidence            999999999999987543211          112235678899999999    789999999999999999766  7788


Q ss_pred             eeeeecCCCCCCCcccccceEEEEE------eCCCCEEEEEcCCCeEEEEEcC
Q psy12911        245 TFKCHRSNGGAGGVQDIYAVNGIVF------HPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~i~~------sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      ++.+|..           .|.++++      +|++++||+|+.||+|+||+++
T Consensus       345 ~l~~H~~-----------~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         345 MLQGHRN-----------SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEECCSS-----------CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEeCCCC-----------CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999987           8998875      6789999999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.5e-34  Score=233.92  Aligned_cols=247  Identities=16%  Similarity=0.213  Sum_probs=214.0

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      .+.+....+.+|.+.|.+++|+|++   .+++++..++.+.+|+...  ......+.+|...+.++.|+++++.+++++.
T Consensus        47 ~~~~~~~~~~~h~~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (317)
T d1vyhc1          47 ETGDFERTLKGHTDSVQDISFDHSG---KLLASCSADMTIKLWDFQG--FECIRTMHGHDHNVSSVSIMPNGDHIVSASR  121 (317)
T ss_dssp             TTCCCCEEECCCSSCEEEEEECTTS---SEEEEEETTSCCCEEETTS--SCEEECCCCCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCCEEEEEeCCCCcEEEEeeeccc---ccccccccccccccccccc--cccccccccccccceeeeccCCCceEEeecc
Confidence            4456677889999999999999999   9999999999999999877  3444677789999999999999999999999


Q ss_pred             CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEEec------
Q psy12911         97 DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCADV------  168 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~------  168 (356)
                      |+.+++||+++++... +..|...+.+++|+  +++.+|++++.|+.|++|++.+++.+..+..+.. +.++.+      
T Consensus       122 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  199 (317)
T d1vyhc1         122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY  199 (317)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGG
T ss_pred             CcceeEeecccceeeeEEccCCCcceeeecc--cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeecccc
Confidence            9999999999988776 77899999999999  9999999999999999999999998888876543 222221      


Q ss_pred             ----------------CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911        169 ----------------DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI  232 (356)
Q Consensus       169 ----------------~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i  232 (356)
                                      .+..+++++.|+.|++||++++......  ..+...+.+++++|+    +.+|++++.||.|++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~l~s~~~dg~i~i  273 (317)
T d1vyhc1         200 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL--VGHDNWVRGVLFHSG----GKFILSCADDKTLRV  273 (317)
T ss_dssp             GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECSS----SSCEEEEETTTEEEE
T ss_pred             ceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE--eCCCCCEEEEEECCC----CCEEEEEECCCeEEE
Confidence                            2346889999999999999987543322  246788999999999    789999999999999


Q ss_pred             EEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911        233 QYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD  289 (356)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd  289 (356)
                      ||+...  +.+.++.+|..           +|++++|+|++++|++|+.||+|+|||
T Consensus       274 wd~~~~--~~~~~~~~h~~-----------~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         274 WDYKNK--RCMKTLNAHEH-----------FVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECCTTS--CCCEEEECCSS-----------CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EECCCC--cEEEEEcCCCC-----------CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999766  67889999987           899999999999999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-34  Score=238.81  Aligned_cols=275  Identities=12%  Similarity=0.061  Sum_probs=208.0

Q ss_pred             CCeeEEEecCCCCCceEEEEEeCCC-eEEEEeccCCCceeeeeeccCC-cceeEEEEcc--CCCeEEEEcCCCeEEEEEc
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGSWDN-NVRCWEVEPNGKTIPKSMQGMS-EPVLDVAWID--DGTKVFMAGCDKTVKCWDL  105 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~  105 (356)
                      +.+++++|+|++   +.|+.++.+. .|+.|+...........+.+|. ..|++++|+|  ++++|++|+.||+|++||+
T Consensus        18 ~~~t~l~~~~~~---~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~   94 (325)
T d1pgua1          18 NFTTHLSYDPTT---NAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW   94 (325)
T ss_dssp             TCCCCCEEETTT---TEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred             CCeEEEEECCCC---CEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeee
Confidence            356899999999   8888887554 3566776554444456677774 6899999998  6789999999999999999


Q ss_pred             CCCceee---------ecccCCCeeEEEEEeCCCCCeEEEEEC--CCeEEEEeCCCCCceEEEeCCCe-eE--EEecCCC
Q psy12911        106 ASNQSMQ---------VAQHDAPVKTCHWIKAPNYTCLMTGSW--DKTLKFWDLRTPQPIMTINLPER-CY--CADVDYP  171 (356)
Q Consensus       106 ~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~-~~--~~~~~~~  171 (356)
                      ..++...         ...|.++|.+++|+  ++++++++++.  ++.+++|+..+++.+..+..+.. +.  .+.+.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  172 (325)
T d1pgua1          95 TFDKESNSVEVNVKSEFQVLAGPISDISWD--FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP  172 (325)
T ss_dssp             EEEGGGTEEEEEEEEEEECCSSCEEEEEEC--TTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSS
T ss_pred             cCCcceeeeecccccccccccCcEEEEEEC--CCCCccceeeccccceEEEEeecccccceeeeeccccccccccccccc
Confidence            7654321         34588899999999  99999888764  67899999999999999887653 33  4445555


Q ss_pred             -eEEEEecCCeEEEEeCCCCcccccc-ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee
Q psy12911        172 -LAVVGTAGRGIVLYQLEGKPQEFKK-TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH  249 (356)
Q Consensus       172 -~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  249 (356)
                       .+++++.|+.+++||+......... ....+...+.+++|+|+.   +..+++++.|+.|++||++..  +.+.++.+|
T Consensus       173 ~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~---~~~l~s~~~d~~i~iwd~~~~--~~~~~l~~~  247 (325)
T d1pgua1         173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS---GEFVITVGSDRKISCFDGKSG--EFLKYIEDD  247 (325)
T ss_dssp             CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT---CCEEEEEETTCCEEEEETTTC--CEEEECCBT
T ss_pred             ceEEEeecccccccccccccccceecccccCCCCccEEeeecccc---ceeccccccccceeeeeeccc--ccccccccc
Confidence             4678899999999999876543322 233566779999999974   578999999999999998766  567777777


Q ss_pred             cCCCCCCCcccccceEEEEEe---CCCCEEEEEcCCCeEEEEEcCcceecCCCCCCcc--ceEEEEECCC-CCEEEEEec
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFH---PVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDM--SISTCALNHN-GQIFAYAVS  323 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~s---p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~-~~~l~~~s~  323 (356)
                      ..           ++..+.|+   |+|++|++++.|+.|+|||+++++++..+..|..  .+..+++.+. +.+|++++.
T Consensus       248 ~~-----------~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~  316 (325)
T d1pgua1         248 QE-----------PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL  316 (325)
T ss_dssp             TB-----------CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET
T ss_pred             cc-----------ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEEC
Confidence            65           45444444   6899999999999999999999998887655443  3444444433 346788876


Q ss_pred             cC
Q psy12911        324 YD  325 (356)
Q Consensus       324 ~d  325 (356)
                      |+
T Consensus       317 dg  318 (325)
T d1pgua1         317 DG  318 (325)
T ss_dssp             TS
T ss_pred             CC
Confidence            54

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=227.97  Aligned_cols=270  Identities=16%  Similarity=0.226  Sum_probs=208.1

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK   98 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   98 (356)
                      .+.+.....|...|+|++|  ++   ++||+|+.||+|+|||+++  ..+...+.+|...|++++|  ++++|++|+.|+
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d~---~~l~sgs~Dg~i~vWd~~~--~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~   75 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--DD---QKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVLCLQY--DERVIITGSSDS   75 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--CS---SEEEEEESSSCEEEEESSS--CCEEEEECCCSSCEEEEEC--CSSEEEEEETTS
T ss_pred             EEEEeccCCCCCCEEEEEE--cC---CEEEEEeCCCeEEEEECCC--CcEEEEEecCCCCEeeeec--ccceeecccccc
Confidence            4566777889999999765  67   8999999999999999987  4556889999999999987  578999999999


Q ss_pred             eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEE---EeCC-CeeEEEecCCCeEE
Q psy12911         99 TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMT---INLP-ERCYCADVDYPLAV  174 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~-~~~~~~~~~~~~~~  174 (356)
                      .|++|++..+.............. .+.  .....++++..++.+++||.........   +..+ ..+....+....++
T Consensus        76 ~i~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  152 (293)
T d1p22a2          76 TVRVWDVNTGEMLNTLIHHCEAVL-HLR--FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV  152 (293)
T ss_dssp             CEEEEESSSCCEEEEECCCCSCEE-EEE--CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             cccccccccccccccccccccccc-ccc--ccccceeecccccceeEeeccccccccccccccccccccccceecccccc
Confidence            999999999887664433333332 333  6667899999999999999987754332   2233 34666777788999


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                      +++.|+.|++||+++.......  ..+...+..+.+.      +..+++++.|+.|++||++..  ..+....++..   
T Consensus       153 ~~s~d~~i~~~d~~~~~~~~~~--~~~~~~v~~~~~~------~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~---  219 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCEFVRTL--NGHKRGIACLQYR------DRLVVSGSSDNTIRLWDIECG--ACLRVLEGHEE---  219 (293)
T ss_dssp             EEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEEE------TTEEEEEETTSCEEEEETTTC--CEEEEECCCSS---
T ss_pred             cccCCCceeeecCCCCcEEEEE--cccccccccccCC------CCeEEEecCCCEEEEEecccc--eeeeeecccce---
Confidence            9999999999999987543222  1234455555554      458999999999999999766  55666666654   


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc---------eecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR---------TKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                              .+..  +++++.+|++++.||.|++||+.+.         ..+..+.+|.+.|++++|  ++++|++|+.|.
T Consensus       220 --------~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg  287 (293)
T d1p22a2         220 --------LVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD  287 (293)
T ss_dssp             --------CEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS
T ss_pred             --------eeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCC
Confidence                    5544  5678899999999999999997643         345567889999999999  567899988654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.7e-34  Score=242.39  Aligned_cols=260  Identities=10%  Similarity=0.077  Sum_probs=198.3

Q ss_pred             CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      ..+..+++|.++|++++|+|++   ++|++|+.|++|+|||+.+........+.+|...|.+++|+|+++.|++++.|++
T Consensus        42 ~~~~~l~gH~~~V~~l~fsp~~---~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~  118 (371)
T d1k8kc_          42 VQVHELKEHNGQVTGVDWAPDS---NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV  118 (371)
T ss_dssp             EEEEEEECCSSCEEEEEEETTT---TEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSS
T ss_pred             EEEEEecCCCCCEEEEEECCCC---CEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCc
Confidence            3566788999999999999999   9999999999999999987554555667789999999999999999999999999


Q ss_pred             EEEEEcCCCceee-----ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEE
Q psy12911        100 VKCWDLASNQSMQ-----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAV  174 (356)
Q Consensus       100 i~vwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (356)
                      |++|++.......     ...|...|.+++|+  |++++|++|+.|+.|++||+.............             
T Consensus       119 i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~-------------  183 (371)
T d1k8kc_         119 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWH--PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP-------------  183 (371)
T ss_dssp             EEEEEEETTTTEEEEEEECTTCCSCEEEEEEC--TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBT-------------
T ss_pred             ceeeeeeccccccccccccccccccccccccc--ccccceeccccCcEEEEEeeccCcccccccccc-------------
Confidence            9999987765321     45688999999999  999999999999999999987654332211100             


Q ss_pred             EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                                |+..............+...+.+++|+|+    +..+++++.|+.|++||+...  ..+..+..|..   
T Consensus       184 ----------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~---  244 (371)
T d1k8kc_         184 ----------WGSKMPFGELMFESSSSCGWVHGVCFSAN----GSRVAWVSHDSTVCLADADKK--MAVATLASETL---  244 (371)
T ss_dssp             ----------TBSCCCTTCEEEECCCCSSCEEEEEECSS----SSEEEEEETTTEEEEEEGGGT--TEEEEEECSSC---
T ss_pred             ----------ccccccceeeeeeccCccCcEEEEEeecc----cccccccccCCcceEEeeecc--cceeeeecccc---
Confidence                      00010001111122245677899999999    789999999999999999765  66778888876   


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc--ceec------------------------------------
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA--RTKL------------------------------------  296 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~--~~~~------------------------------------  296 (356)
                              +|.+++|+|++++|++|. |+.+++|....  +...                                    
T Consensus       245 --------~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (371)
T d1k8kc_         245 --------PLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA  315 (371)
T ss_dssp             --------CEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred             --------cceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccc
Confidence                    899999999998888775 66666654322  1110                                    


Q ss_pred             ---CCCCCCccceEEEEECCCC----CEEEEEeccC
Q psy12911        297 ---KPSEAMDMSISTCALNHNG----QIFAYAVSYD  325 (356)
Q Consensus       297 ---~~~~~~~~~v~~~~~s~~~----~~l~~~s~~d  325 (356)
                         .....|.+.|+++++.+.+    ..|++++.|+
T Consensus       316 ~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg  351 (371)
T d1k8kc_         316 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG  351 (371)
T ss_dssp             --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS
T ss_pred             ccceecccccCCEEEEEEeCCCCcceEEEEEEcCCC
Confidence               0012488899999998765    3588888665

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-34  Score=242.69  Aligned_cols=293  Identities=12%  Similarity=0.144  Sum_probs=202.1

Q ss_pred             eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc----eeeeeeccCCcceeEEEEc------c-CCCe
Q psy12911         22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK----TIPKSMQGMSEPVLDVAWI------D-DGTK   90 (356)
Q Consensus        22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~v~~~~~s------~-~~~~   90 (356)
                      ....++|.+.|.++++++     ++|++++.|++|+|||......    ........|...+..+...      . ++.+
T Consensus         7 ~~~~~~H~~~I~~v~~~~-----~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN-----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   81 (393)
T ss_dssp             EEESSCSSSCEEEEEECS-----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             eecCCcccCccEEEEEeC-----CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcE
Confidence            456789999999999864     5899999999999999765331    1112223355444333321      1 3346


Q ss_pred             EEEEcCCCeEEEEEcCCCceee-----------ecccCCCeeEEEEEeCC---CCCeEEEEECCCeEEEEeCCCCC----
Q psy12911         91 VFMAGCDKTVKCWDLASNQSMQ-----------VAQHDAPVKTCHWIKAP---NYTCLMTGSWDKTLKFWDLRTPQ----  152 (356)
Q Consensus        91 l~~~~~dg~i~vwd~~~~~~~~-----------~~~~~~~v~~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~----  152 (356)
                      +++++.||.|++|++.......           ...+...+..++|.+..   .+.++++++.||.+++||+....    
T Consensus        82 ~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~  161 (393)
T d1sq9a_          82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  161 (393)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence            7899999999999986543221           12355667888887322   25689999999999999975321    


Q ss_pred             -------ceE----EEeC----CCeeEEEecCCC-eEEEEecCCeEEEEeCCCCccccc----cccCcccccceEEEeec
Q psy12911        153 -------PIM----TINL----PERCYCADVDYP-LAVVGTAGRGIVLYQLEGKPQEFK----KTESPLKYQNRCIAIFR  212 (356)
Q Consensus       153 -------~~~----~~~~----~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~~~i~~~~~~~  212 (356)
                             ...    ....    ...+.++.+..+ ++++|+.|++|++||+.++.....    .....|...|.+++|+|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence                   111    1111    112333443332 888999999999999998754322    12235778999999999


Q ss_pred             CCCCCCCeEEEeecCC---eEEEEEeCCCCCCCcceeeeecCC--CCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEE
Q psy12911        213 DKKKQPAGYGLGSVEG---RVAIQYVNPANPKDNFTFKCHRSN--GGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSF  287 (356)
Q Consensus       213 ~~~~~~~~~~~~~~dg---~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~i  287 (356)
                      +    +.+|++|+.|+   .|++||+...  ..+..+......  .......|...|++++|+|++++|++|+.|++|+|
T Consensus       242 d----g~~l~sgs~D~t~~~i~lwd~~~g--~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~v  315 (393)
T d1sq9a_         242 Q----GSLLAIAHDSNSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF  315 (393)
T ss_dssp             S----TTEEEEEEEETTEEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             c----cceeeeecCCCCcceeeecccccc--eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEE
Confidence            9    88999999987   4899998765  333333211110  00011112228999999999999999999999999


Q ss_pred             EEcCcceecCCCCCCccceE----EEEECCCCCEEEEEeccC
Q psy12911        288 WDKDARTKLKPSEAMDMSIS----TCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       288 wd~~~~~~~~~~~~~~~~v~----~~~~s~~~~~l~~~s~~d  325 (356)
                      ||+++++++.++++|.+.|.    .++|+|++..+++++..+
T Consensus       316 Wd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~  357 (393)
T d1sq9a_         316 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD  357 (393)
T ss_dssp             EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE
T ss_pred             EECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccce
Confidence            99999999999999998876    589999999988765433

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-32  Score=224.90  Aligned_cols=233  Identities=16%  Similarity=0.240  Sum_probs=182.6

Q ss_pred             eeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeee--cccCCCeeEEEEEeCCCCCeEEEEECCCeEE
Q psy12911         67 TIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLK  144 (356)
Q Consensus        67 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~  144 (356)
                      .+.+.++||..+|++++|+|++++|++|+.||+|++||+++++....  ..|...|.+++|+  ++++ +++++.|+.++
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~--~~g~-~~~~~~d~~v~   79 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT--SKGD-LFTVSWDDHLK   79 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC--TTSC-EEEEETTTEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEee--ccce-eecccceeeEE
Confidence            34578999999999999999999999999999999999999987763  4689999999999  8876 56677899999


Q ss_pred             EEeCCCCCc----eEEEeCCC--eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCC
Q psy12911        145 FWDLRTPQP----IMTINLPE--RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQP  218 (356)
Q Consensus       145 iwd~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  218 (356)
                      +|+......    ........  ..+.++.++..+ +++.++.+.+|+......      ......+.+++++|+    +
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~-~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~s~~----~  148 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA-VAACYKHIAIYSHGKLTE------VPISYNSSCVALSND----K  148 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE-EEEESSEEEEEETTEEEE------EECSSCEEEEEECTT----S
T ss_pred             EeccCCccccccccccccccccccccccccccccc-cccccccccccccccccc------ccccccccccccccc----c
Confidence            999865421    11112222  344455555544 455667899999653211      123456789999999    7


Q ss_pred             CeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceec--
Q psy12911        219 AGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKL--  296 (356)
Q Consensus       219 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~--  296 (356)
                      ..+++++.|+.+++||++..... ......|..           .|++++|+|++++|++++.|+.|++||+.++..+  
T Consensus       149 ~~l~~g~~dg~i~~~d~~~~~~~-~~~~~~~~~-----------~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  216 (299)
T d1nr0a2         149 QFVAVGGQDSKVHVYKLSGASVS-EVKTIVHPA-----------EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH  216 (299)
T ss_dssp             CEEEEEETTSEEEEEEEETTEEE-EEEEEECSS-----------CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred             ccccccccccccccccccccccc-ccccccccc-----------cccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999765321 123345555           8999999999999999999999999999887554  


Q ss_pred             -CCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        297 -KPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       297 -~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                       ..+.+|...|++++|+|++++|++|+.|.
T Consensus       217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg  246 (299)
T d1nr0a2         217 TNSWTFHTAKVACVSWSPDNVRLATGSLDN  246 (299)
T ss_dssp             CCCCCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccccccccceEEEcCCC
Confidence             45667899999999999999999998665

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-32  Score=223.45  Aligned_cols=252  Identities=13%  Similarity=0.159  Sum_probs=186.0

Q ss_pred             CCceEEeCCC-CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCce------eeeeeccCCcceeEEEEccCCCeE
Q psy12911         19 NKDFEVVSPP-EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKT------IPKSMQGMSEPVLDVAWIDDGTKV   91 (356)
Q Consensus        19 ~~~~~~~~~h-~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l   91 (356)
                      ......+.+| ...|++++|+|+. ++.+|++|+.||+|+|||+......      ....+..|.++|.+++|++++++|
T Consensus        52 ~~~~~~~~gh~~~~v~~v~fsP~~-~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  130 (325)
T d1pgua1          52 VPPVVQFTGHGSSVVTTVKFSPIK-GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL  130 (325)
T ss_dssp             SCSEEEECTTTTSCEEEEEECSST-TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ccceEEEeCCCCCCEEEEEEeeCC-CCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcc
Confidence            3445566777 4689999999842 1279999999999999998753211      112345688999999999999998


Q ss_pred             EEEcC--CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCe-EEEEECCCeEEEEeCCCCCceEEEeCCC----ee
Q psy12911         92 FMAGC--DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTC-LMTGSWDKTLKFWDLRTPQPIMTINLPE----RC  163 (356)
Q Consensus        92 ~~~~~--dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~  163 (356)
                      ++++.  ++.+.+|+.++++.+. +.+|...|.+++|+  +++.. +++++.|+.|++||+...+....+....    .+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v  208 (325)
T d1pgua1         131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK--QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV  208 (325)
T ss_dssp             EEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEEC--SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCE
T ss_pred             ceeeccccceEEEEeecccccceeeeeccccccccccc--ccccceEEEeecccccccccccccccceecccccCCCCcc
Confidence            87764  6789999999988776 77899999999999  77654 7789999999999998887766665322    24


Q ss_pred             EE--EecC-CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEee---cCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        164 YC--ADVD-YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIF---RDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       164 ~~--~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                      .+  ++++ +.++++++.|+.|++||++++......  ..+...+..+.++   ++    +.+|++++.|+.|+|||++.
T Consensus       209 ~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l--~~~~~~v~~~~~s~~~~d----g~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         209 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI--EDDQEPVQGGIFALSWLD----SQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC--CBTTBCCCSCEEEEEESS----SSEEEEEETTSEEEEEETTT
T ss_pred             EEeeeccccceeccccccccceeeeeeccccccccc--cccccccccceeeeeccC----CCEEEEEeCCCeEEEEECCC
Confidence            44  4444 468889999999999999887543222  2344445444444   45    67999999999999999986


Q ss_pred             CCCCCcceeeeecCCCCCCCcccccceEEEEEeCC-CCEEEEEcCCCeEEEEEc
Q psy12911        238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV-HGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~~~l~s~~~dg~i~iwd~  290 (356)
                      +  +.+..+..|....         .+..+++.+. +.+|++++.||.|++||+
T Consensus       283 ~--~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         283 S--KCVQKWTLDKQQL---------GNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             T--EEEEEEECCTTCG---------GGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             C--CEEEEEEecCCcc---------cCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            6  5566665554310         2334444433 357899999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-31  Score=219.31  Aligned_cols=251  Identities=14%  Similarity=0.220  Sum_probs=211.1

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC--ceeeeeeccCCcceeEEEEccCCCeEEE
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKVFM   93 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~   93 (356)
                      ....+....+.+|...|.+++|+|++   .++++|+.|+.+++|+.....  ......+.+|...........+ ..++.
T Consensus        84 ~~~~~~~~~~~~~~~~v~~v~~~~~~---~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  159 (340)
T d1tbga_          84 SYTTNKVHAIPLRSSWVMTCAYAPSG---NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVT  159 (340)
T ss_dssp             TTTTEEEEEEECSCSCEEEEEECTTS---SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET-TEEEE
T ss_pred             cccceeEEEEecccccEEeeEeeccc---eeeeeecccceeecccccccccccccceecccccccccccccccc-ccccc
Confidence            34456677788999999999999999   999999999999999987633  2333556777777776666554 57777


Q ss_pred             EcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecC
Q psy12911         94 AGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVD  169 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~  169 (356)
                      ...+.....+......... ...+...+....+.  +.+.++++++.|+.|++||+++++.+..+..+..   .++++++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~  237 (340)
T d1tbga_         160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA--PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN  237 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccceeEeeeccc--cccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCC
Confidence            8889999999988776655 56677888888888  8999999999999999999999999999987653   4456667


Q ss_pred             CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH  249 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  249 (356)
                      +..+++++.|+.|++||++............+...+.+++|+|+    +.++++|+.||.|++||+...  +.+.++.+|
T Consensus       238 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~H  311 (340)
T d1tbga_         238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS----GRLLLAGYDDFNCNVWDALKA--DRAGVLAGH  311 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS----SCEEEEEETTSCEEEEETTTC--CEEEEECCC
T ss_pred             CCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCC----CCEEEEEECCCEEEEEECCCC--cEEEEEcCC
Confidence            78999999999999999998766555555566778999999999    889999999999999999766  678888888


Q ss_pred             cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911        250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD  289 (356)
Q Consensus       250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd  289 (356)
                      ..           +|++++|+|++++|++|+.||.|+|||
T Consensus       312 ~~-----------~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         312 DN-----------RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SS-----------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CC-----------CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            87           899999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.6e-30  Score=212.28  Aligned_cols=247  Identities=15%  Similarity=0.176  Sum_probs=183.6

Q ss_pred             CCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE
Q psy12911         15 TPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA   94 (356)
Q Consensus        15 ~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~   94 (356)
                      +....+.+..+.+|.+.|++++|+|+    .+|++|+.|+.|++|+..............+......+.+.+++.+++++
T Consensus        39 d~~~~~~~~~l~~H~~~V~~l~~s~~----~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (355)
T d1nexb2          39 DSINKKFLLQLSGHDGGVWALKYAHG----GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG  114 (355)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEEETT----TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEE
T ss_pred             ECCCCcEEEEEECCCCCEEEEEEcCC----CEEEEEecccccccccccccccccccccccccccccccccccccceeeee
Confidence            33455678889999999999999986    48999999999999999874333323333344455566667777778888


Q ss_pred             cCCCeEEEEEcCCCc---------------------------------------------------------------ee
Q psy12911         95 GCDKTVKCWDLASNQ---------------------------------------------------------------SM  111 (356)
Q Consensus        95 ~~dg~i~vwd~~~~~---------------------------------------------------------------~~  111 (356)
                      +.|+.|++||+.+..                                                               .+
T Consensus       115 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  194 (355)
T d1nexb2         115 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL  194 (355)
T ss_dssp             ETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEE
T ss_pred             cCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccce
Confidence            888888888765431                                                               11


Q ss_pred             e-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCCCeEEEEecCCeEEEEeCCC
Q psy12911        112 Q-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYPLAVVGTAGRGIVLYQLEG  189 (356)
Q Consensus       112 ~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~i~d~~~  189 (356)
                      . ...+...+.++.|+  +++..+++++.|+.|++||++++..+..+..+. .+.++.++++.+++++.||.|++||+++
T Consensus       195 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~  272 (355)
T d1nexb2         195 YILSGHTDRIYSTIYD--HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND  272 (355)
T ss_dssp             EEECCCSSCEEEEEEE--TTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTT
T ss_pred             eeeecccccccccccc--ccceeeecccccceEEeeeccccccccccccccccccccccccceeeeeecccccccccccc
Confidence            1 22355677788888  899999999999999999999999999998766 4667788889999999999999999987


Q ss_pred             CccccccccCcccccceEEEe-ecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc-eeeeecCCCCCCCcccccceEEE
Q psy12911        190 KPQEFKKTESPLKYQNRCIAI-FRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF-TFKCHRSNGGAGGVQDIYAVNGI  267 (356)
Q Consensus       190 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~i  267 (356)
                      ......    .+...+.++.+ +++    +. +++++.|+.|++||++.+  +.+. .+.+|..           +|.++
T Consensus       273 ~~~~~~----~~~~~~~~~~~~~~~----~~-~l~~g~d~~i~vwd~~tg--~~~~~~~~~~~~-----------~V~~v  330 (355)
T d1nexb2         273 YSRKFS----YHHTNLSAITTFYVS----DN-ILVSGSENQFNIYNLRSG--KLVHANILKDAD-----------QIWSV  330 (355)
T ss_dssp             CCEEEE----EECTTCCCCCEEEEC----SS-EEEEEETTEEEEEETTTC--CBCCSCTTTTCS-----------EEEEE
T ss_pred             cceecc----cccCCceEEEEEcCC----CC-EEEEEeCCEEEEEECCCC--CEEEEEecCCCC-----------CEEEE
Confidence            654322    23445555544 444    44 555567999999999876  4443 3455665           89999


Q ss_pred             EEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        268 VFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       268 ~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                      +|+|+ .++++++.||+++||.+
T Consensus       331 ~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         331 NFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEETT-EEEEEEESSSCEEEEEE
T ss_pred             EEcCC-eEEEEEECCCcEEEEEE
Confidence            99987 57888999998766543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.3e-28  Score=200.53  Aligned_cols=253  Identities=17%  Similarity=0.180  Sum_probs=186.8

Q ss_pred             CCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcce---------------
Q psy12911         15 TPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV---------------   79 (356)
Q Consensus        15 ~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v---------------   79 (356)
                      +....+.+..+.+|.+.|.+++|+|     ++|++|+.|+.+++|+.......  .....+...+               
T Consensus        43 d~~~~~~~~~~~~h~~~V~~v~~~~-----~~l~s~s~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  115 (342)
T d2ovrb2          43 SAVTGKCLRTLVGHTGGVWSSQMRD-----NIIISGSTDRTLKVWNAETGECI--HTLYGHTSTVRCMHLHEKRVVSGSR  115 (342)
T ss_dssp             ETTTCCEEEECCCCSSCEEEEEEET-----TEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEEETTEEEEEET
T ss_pred             ECCCCCEEEEEeCCCCCEEEEEeCC-----Cccccceecccccccccccccce--ecccccceeEeeeeccccccccccc
Confidence            3445667888999999999999986     47999999999999998763211  1111111111               


Q ss_pred             -----------------------eEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEE
Q psy12911         80 -----------------------LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLM  135 (356)
Q Consensus        80 -----------------------~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~  135 (356)
                                             ....+.+....+++++.|+.|++||....+.+. +.+|...+..+.    +++.+++
T Consensus       116 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~l~  191 (342)
T d2ovrb2         116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ----FDGIHVV  191 (342)
T ss_dssp             TSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE----ECSSEEE
T ss_pred             ceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc----CCCCEEE
Confidence                                   112233455678888889999999988877765 666776666554    5678999


Q ss_pred             EEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccc-cCcccccceEEEeecC
Q psy12911        136 TGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT-ESPLKYQNRCIAIFRD  213 (356)
Q Consensus       136 ~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~  213 (356)
                      +++.||.|++||++.++.+..+..+. .+.++.+.++++++++.|+.|++||+.......... ...+...+.++.++  
T Consensus       192 s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--  269 (342)
T d2ovrb2         192 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--  269 (342)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--
T ss_pred             EEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--
Confidence            99999999999999999999888765 466788888999999999999999998865433222 22334455555554  


Q ss_pred             CCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCe----EEEEE
Q psy12911        214 KKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGT----FSFWD  289 (356)
Q Consensus       214 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~----i~iwd  289 (356)
                          +.++++|+.||.|++||++.+  +.+.++.....      ..+...|++++|+|++.+||+|+.||+    |++||
T Consensus       270 ----~~~~~s~s~Dg~i~iwd~~tg--~~i~~~~~~~~------~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         270 ----KNFVITSSDDGTVKLWDLKTG--EFIRNLVTLES------GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             ----SSEEEEEETTSEEEEEETTTC--CEEEEEEECTT------GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             ----CCeeEEEcCCCEEEEEECCCC--CEEEEEecccC------CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEe
Confidence                458999999999999999876  55555543221      011127999999999999999999985    99999


Q ss_pred             cCc
Q psy12911        290 KDA  292 (356)
Q Consensus       290 ~~~  292 (356)
                      +..
T Consensus       338 f~~  340 (342)
T d2ovrb2         338 FDV  340 (342)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            863

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.9e-28  Score=200.52  Aligned_cols=258  Identities=11%  Similarity=0.091  Sum_probs=187.3

Q ss_pred             eeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce----eeecccCCCeeEEEEEeCCCCCeEEEEECCCe
Q psy12911         67 TIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS----MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKT  142 (356)
Q Consensus        67 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~  142 (356)
                      +++...++|++.|++|+|+|++++||+|+.||+|+|||+.++..    ....+|..+|.+++|+| .++.+|++|+.||.
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~-~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGE   80 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSC
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeC-CCCCEEEEcccccc
Confidence            34567789999999999999999999999999999999976543    23457999999999994 34668999999999


Q ss_pred             EEEEeCCCCCceEEEeCCC----eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccc----cCcccccceEEEeecCC
Q psy12911        143 LKFWDLRTPQPIMTINLPE----RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT----ESPLKYQNRCIAIFRDK  214 (356)
Q Consensus       143 i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~i~~~~~~~~~  214 (356)
                      |++|++.............    ...........+++++.++.+++||++.........    ............+.+. 
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  159 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN-  159 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC-
T ss_pred             eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeecc-
Confidence            9999999887777665443    234455566799999999999999987543222111    1112233455666666 


Q ss_pred             CCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeC-CCCEEEEEcCCCeEEEEEcCcc
Q psy12911        215 KKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP-VHGTLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       215 ~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~s~~~dg~i~iwd~~~~  293 (356)
                         +..+++++.|+.+++|++.......  .........        ..+.+..+.+ ++..+++++.||.+.+|+....
T Consensus       160 ---~~~~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~  226 (342)
T d1yfqa_         160 ---SSRLIVGMNNSQVQWFRLPLCEDDN--GTIEESGLK--------YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             ---SSEEEEEESTTEEEEEESSCCTTCC--CEEEECSCS--------SCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             ---CCceeeecCCCcEEEEecccCcccc--eeeeecccc--------cceeeeEeecCCCCEEEeecCCCeEEEEEecCC
Confidence               6789999999999999997664322  222211100        1455555544 5689999999999999997643


Q ss_pred             eec---------------CCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCceee
Q psy12911        294 TKL---------------KPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIF  342 (356)
Q Consensus       294 ~~~---------------~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~~  342 (356)
                      ...               .....|...|++++|+|++++||+|+.|+   ...+||...+..+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg---~v~vWD~~~~~~l~  287 (342)
T d1yfqa_         227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG---IISCWNLQTRKKIK  287 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS---CEEEEETTTTEEEE
T ss_pred             cceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCC---EEEEEECCCCcEEE
Confidence            221               12345667899999999999999999765   34556666555443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.3e-29  Score=210.90  Aligned_cols=250  Identities=11%  Similarity=0.116  Sum_probs=174.5

Q ss_pred             eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce-------eeecccCCCeeEEEEE---e--CCCCCeEEEE
Q psy12911         70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS-------MQVAQHDAPVKTCHWI---K--APNYTCLMTG  137 (356)
Q Consensus        70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~~v~~~~~~---~--~~~~~~l~~~  137 (356)
                      ...++|...|.++++++  +++++++.|++|++||..+.+.       .....|...+..+...   +  ..++.+++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            45678999999999864  6999999999999999876542       1223344443333221   1  0133568899


Q ss_pred             ECCCeEEEEeCCCCCceEEEe-----C------CCe--eEEEecC-----CCeEEEEecCCeEEEEeCCCCcccc-----
Q psy12911        138 SWDKTLKFWDLRTPQPIMTIN-----L------PER--CYCADVD-----YPLAVVGTAGRGIVLYQLEGKPQEF-----  194 (356)
Q Consensus       138 ~~dg~i~iwd~~~~~~~~~~~-----~------~~~--~~~~~~~-----~~~~~~~~~d~~i~i~d~~~~~~~~-----  194 (356)
                      +.||.|++|++........+.     .      ...  ...+...     ...+++++.|+.+++|++.......     
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            999999999986553322111     0      111  2333333     2478899999999999986432111     


Q ss_pred             -----------ccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc------eeeeecCCCCCCC
Q psy12911        195 -----------KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF------TFKCHRSNGGAGG  257 (356)
Q Consensus       195 -----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~------~~~~~~~~~~~~~  257 (356)
                                 ..........+.+++|+|+    + ++++|+.|+.|++||+...  +.+.      .+.+|..      
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d----g-~lasgs~Dg~i~iwd~~~~--~~~~~~~~~~~l~~h~~------  232 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISER----G-LIATGFNNGTVQISELSTL--RPLYNFESQHSMINNSN------  232 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTT----S-EEEEECTTSEEEEEETTTT--EEEEEEECCC---CCCC------
T ss_pred             eeccceecccceecccCCCCcEEEEEECCC----C-EEEEEeCCCcEEEEeeccc--ccccccccccccccccc------
Confidence                       0111223455789999998    4 8899999999999999765  3333      3344554      


Q ss_pred             cccccceEEEEEeCCCCEEEEEcCCC---eEEEEEcCcceecCCC-------------CCCccceEEEEECCCCCEEEEE
Q psy12911        258 VQDIYAVNGIVFHPVHGTLATVGSEG---TFSFWDKDARTKLKPS-------------EAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       258 ~~~~~~i~~i~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                           +|++++|+|+|++|++|+.|+   .|++||+++++++..+             .+|.+.|++++|+||+++|++|
T Consensus       233 -----~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~  307 (393)
T d1sq9a_         233 -----SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  307 (393)
T ss_dssp             -----CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             -----eEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEE
Confidence                 899999999999999999887   4999999988765544             4799999999999999999999


Q ss_pred             eccCCcCCCccCCCCCCceee
Q psy12911        322 VSYDWSKGHEHNNPNKGNAIF  342 (356)
Q Consensus       322 s~~d~~~~~~~~~~~~~~~~~  342 (356)
                      +.|   ....+|+...+.++.
T Consensus       308 s~D---~~v~vWd~~~g~~~~  325 (393)
T d1sq9a_         308 GWD---GKLRFWDVKTKERIT  325 (393)
T ss_dssp             ETT---SEEEEEETTTTEEEE
T ss_pred             CCC---CEEEEEECCCCCEEE
Confidence            854   445666666655553

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=1e-28  Score=206.86  Aligned_cols=273  Identities=12%  Similarity=0.032  Sum_probs=199.8

Q ss_pred             eEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC--eEEEEEcCCCc
Q psy12911         33 SCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK--TVKCWDLASNQ  109 (356)
Q Consensus        33 ~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~  109 (356)
                      ..-.||| ||   +++|+++ +|.|++||++.+  .. ..+ +|...|.+++|+|||++|++++.+.  .|++||.++++
T Consensus         6 ~~~~fSP~dG---~~~a~~~-~g~v~v~d~~~~--~~-~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~   77 (360)
T d1k32a3           6 FAEDFSPLDG---DLIAFVS-RGQAFIQDVSGT--YV-LKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK   77 (360)
T ss_dssp             GEEEEEECGG---GCEEEEE-TTEEEEECTTSS--BE-EEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred             hcccccCCCC---CEEEEEE-CCeEEEEECCCC--cE-EEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc
Confidence            4567999 88   9999887 579999999762  33 223 6999999999999999998876653  79999999999


Q ss_pred             eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEecCCCeEEEEe---------
Q psy12911        110 SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCADVDYPLAVVGT---------  177 (356)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------  177 (356)
                      ...+..|...|.+++|+  |++++|++++.++.+++|++.+++....+..+.   ..+.+++++..++.+.         
T Consensus        78 ~~~~~~~~~~v~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~  155 (360)
T d1k32a3          78 AEKFEENLGNVFAMGVD--RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG  155 (360)
T ss_dssp             EEECCCCCCSEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred             EEEeeCCCceEEeeeec--ccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceee
Confidence            98899999999999999  999999999999999999999999888877654   4577788888887543         


Q ss_pred             -cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC-----CcceeeeecC
Q psy12911        178 -AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK-----DNFTFKCHRS  251 (356)
Q Consensus       178 -~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-----~~~~~~~~~~  251 (356)
                       .++.+++||+.++.....   ..+...+..++++|+    +..|++++.++.+.+|+.......     ....+..+..
T Consensus       156 ~~~~~~~v~d~~~~~~~~~---~~~~~~~~~~~~spd----g~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  228 (360)
T d1k32a3         156 YVMQAIHVYDMEGRKIFAA---TTENSHDYAPAFDAD----SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG  228 (360)
T ss_dssp             CCEEEEEEEETTTTEEEEC---SCSSSBEEEEEECTT----SCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred             ccccceeeeccccCceeee---cccccccccccccCC----CCEEEEEeCCCceEcccccccceeeccccceEEEecccC
Confidence             346799999988643222   234566788999999    889999999999999986432110     0111111110


Q ss_pred             CCC-----------------CCCc--------ccccceEEEEEeCCC-------------CEEEEEcCCCeEEEEEcCcc
Q psy12911        252 NGG-----------------AGGV--------QDIYAVNGIVFHPVH-------------GTLATVGSEGTFSFWDKDAR  293 (356)
Q Consensus       252 ~~~-----------------~~~~--------~~~~~i~~i~~sp~~-------------~~l~s~~~dg~i~iwd~~~~  293 (356)
                      ...                 ..+.        ........+...+++             .++++++.++.|++||+.++
T Consensus       229 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  308 (360)
T d1k32a3         229 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR  308 (360)
T ss_dssp             CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred             ccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC
Confidence            000                 0000        001122334443332             24556667899999999886


Q ss_pred             eecCCCCCCccceEEEEECCCCCEEEEEeccCC
Q psy12911        294 TKLKPSEAMDMSISTCALNHNGQIFAYAVSYDW  326 (356)
Q Consensus       294 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~  326 (356)
                      +.    ..|.+.|.+++|||||++|++++.|+.
T Consensus       309 ~~----~~~~~~v~~~~~SpDG~~l~~~~~Dg~  337 (360)
T d1k32a3         309 KV----TEVKNNLTDLRLSADRKTVMVRKDDGK  337 (360)
T ss_dssp             CE----EEEEEEEEEEEECTTSCEEEEEETTSC
T ss_pred             eE----EEecCCcCEEEECCCCCEEEEEECCCe
Confidence            54    345678999999999999999997653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=4.4e-28  Score=202.92  Aligned_cols=255  Identities=9%  Similarity=0.008  Sum_probs=187.4

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCC--eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDN--NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD  104 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  104 (356)
                      +|...|.+++|+|||   ++|++++.+.  .|++||++++  . ...+..|...|.+++|+|++++|++++.++.+++|+
T Consensus        40 ~~~~~v~~~~~spDg---~~l~~~~~~~g~~v~v~d~~~~--~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~  113 (360)
T d1k32a3          40 PEPLRIRYVRRGGDT---KVAFIHGTREGDFLGIYDYRTG--K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD  113 (360)
T ss_dssp             SCCSCEEEEEECSSS---EEEEEEEETTEEEEEEEETTTC--C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCEEEEEECCCC---CEEEEEEcCCCCEEEEEECCCC--c-EEEeeCCCceEEeeeecccccccceecccccccccc
Confidence            699999999999999   8888776553  7999999872  2 356778999999999999999999999999999999


Q ss_pred             cCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEE----------CCCeEEEEeCCCCCceEEEeCCCe--eEEEecCCC
Q psy12911        105 LASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGS----------WDKTLKFWDLRTPQPIMTINLPER--CYCADVDYP  171 (356)
Q Consensus       105 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~  171 (356)
                      +.+++... +..|...+.+++|+  |+|++|+.+.          .++.+++||+.+++..........  ...+++++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~s--pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~  191 (360)
T d1k32a3         114 LETGKPTVIERSREAMITDFTIS--DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK  191 (360)
T ss_dssp             TTTCCEEEEEECSSSCCCCEEEC--TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSC
T ss_pred             ccccceeeeeecccccccchhhc--cceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCC
Confidence            99998876 66788899999999  9999998654          345699999988876555554443  456778888


Q ss_pred             eEEEEecCCeEEEEeCCCCcccccccc-------------------------------C----------cccccceEEEe
Q psy12911        172 LAVVGTAGRGIVLYQLEGKPQEFKKTE-------------------------------S----------PLKYQNRCIAI  210 (356)
Q Consensus       172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~-------------------------------~----------~~~~~i~~~~~  210 (356)
                      .|++++.++.+.+|+............                               .          ........+..
T Consensus       192 ~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (360)
T d1k32a3         192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP  271 (360)
T ss_dssp             EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE
T ss_pred             EEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeee
Confidence            999999999999998754321100000                               0          00011122222


Q ss_pred             ecCC---------CCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC
Q psy12911        211 FRDK---------KKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS  281 (356)
Q Consensus       211 ~~~~---------~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~  281 (356)
                      .+++         .....+++.++.++.+++||+....      ...+..           .|.+++|||||++|++++.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------~~~~~~-----------~v~~~~~SpDG~~l~~~~~  334 (360)
T d1k32a3         272 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK------VTEVKN-----------NLTDLRLSADRKTVMVRKD  334 (360)
T ss_dssp             CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC------EEEEEE-----------EEEEEEECTTSCEEEEEET
T ss_pred             cCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe------EEEecC-----------CcCEEEECCCCCEEEEEEC
Confidence            2210         0001234555678889999987542      223333           6899999999999999999


Q ss_pred             CCeEEEEEcCcceecCCCCCCccce
Q psy12911        282 EGTFSFWDKDARTKLKPSEAMDMSI  306 (356)
Q Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~v  306 (356)
                      ||.|++||+++++...++..+..++
T Consensus       335 Dg~i~v~d~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         335 DGKIYTFPLEKPEDERTVETDKRPL  359 (360)
T ss_dssp             TSCEEEEESSCTTSCEECCCCSSCE
T ss_pred             CCeEEEEECCCCCcceEEEeccccc
Confidence            9999999999988777666554443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-26  Score=186.51  Aligned_cols=241  Identities=20%  Similarity=0.274  Sum_probs=184.3

Q ss_pred             CCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE
Q psy12911         15 TPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA   94 (356)
Q Consensus        15 ~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~   94 (356)
                      +....+.+.++.+|.+.|++++|  ++   ++|++|+.|+.|++|++..+...  .....+..  ....+.+....++++
T Consensus        41 d~~~~~~~~~l~~H~~~V~~v~~--~~---~~l~s~s~D~~i~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~  111 (293)
T d1p22a2          41 DKNTLECKRILTGHTGSVLCLQY--DE---RVIITGSSDSTVRVWDVNTGEML--NTLIHHCE--AVLHLRFNNGMMVTC  111 (293)
T ss_dssp             ESSSCCEEEEECCCSSCEEEEEC--CS---SEEEEEETTSCEEEEESSSCCEE--EEECCCCS--CEEEEECCTTEEEEE
T ss_pred             ECCCCcEEEEEecCCCCEeeeec--cc---ceeeccccccccccccccccccc--cccccccc--ccccccccccceeec
Confidence            34556778889999999999987  45   79999999999999999884322  23322222  333455566789999


Q ss_pred             cCCCeEEEEEcCCCceee----ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecC
Q psy12911         95 GCDKTVKCWDLASNQSMQ----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVD  169 (356)
Q Consensus        95 ~~dg~i~vwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~  169 (356)
                      ..++.+.+|+........    ...|...+..+.+.    ...+++++.|+.|++||+++++.+..+..+. .+..+.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  187 (293)
T d1p22a2         112 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD----DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR  187 (293)
T ss_dssp             ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred             ccccceeEeeccccccccccccccccccccccceec----ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC
Confidence            999999999998765432    56688888888775    3578899999999999999999999988765 45667778


Q ss_pred             CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC-------CCC
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN-------PKD  242 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~-------~~~  242 (356)
                      +..+++++.|+.|++||+++........  .+...+.  .+.++    +..+++++.||.|++||+....       ...
T Consensus       188 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~--~~~~~----~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  259 (293)
T d1p22a2         188 DRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVR--CIRFD----NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC  259 (293)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEE--EEECC----SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred             CCeEEEecCCCEEEEEecccceeeeeec--ccceeee--ecccc----ceEEEEEcCCCEEEEEECCCCccccccCCcee
Confidence            8899999999999999999875433222  2333343  34455    6789999999999999974321       133


Q ss_pred             cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911        243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD  289 (356)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd  289 (356)
                      +..+.+|..           .|++++|  ++.+|++++.||+|+|||
T Consensus       260 ~~~~~~H~~-----------~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         260 LRTLVEHSG-----------RVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEECCCSS-----------CCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             eEEecCCCC-----------CEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            456677776           8999998  467899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.4e-26  Score=187.85  Aligned_cols=235  Identities=14%  Similarity=0.173  Sum_probs=181.4

Q ss_pred             EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911         24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW  103 (356)
Q Consensus        24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  103 (356)
                      ...+|...|.++++++++    .+++++.|+++++|++..  .    .   ....+..+++++++..++++ .++.+.+|
T Consensus        41 ~~~~h~~~V~~~~~~~~~----~~~s~s~D~~v~~w~~~~--~----~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  106 (287)
T d1pgua2          41 MHQDHSNLIVSLDNSKAQ----EYSSISWDDTLKVNGITK--H----E---FGSQPKVASANNDGFTAVLT-NDDDLLIL  106 (287)
T ss_dssp             EECCCCSCEEEEECCSTT----CCEEEETTTEEEETTEEE--E----E---CSSCEEEEEECSSSEEEEEE-TTSEEEEE
T ss_pred             CCCCCCCCEEEEEecCCC----eEEEEeeccccccccccc--c----c---cccceeeeeeccCCceEEEe-ecccceee
Confidence            457899999999999875    689999999999999865  1    1   23457788899888666665 46678999


Q ss_pred             EcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCC-eEEEEeCCCCCceEEEeCCC----eeEEEecCCCeEEEEec
Q psy12911        104 DLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK-TLKFWDLRTPQPIMTINLPE----RCYCADVDYPLAVVGTA  178 (356)
Q Consensus       104 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  178 (356)
                      +..+++.+....+...+.+  ++  +++..+++++.++ .+++|++...+....+..+.    ..+++++++.++++++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~  182 (287)
T d1pgua2         107 QSFTGDIIKSVRLNSPGSA--VS--LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV  182 (287)
T ss_dssp             ETTTCCEEEEEECSSCEEE--EE--ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eccceeeeeeccccceeee--ee--ccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc
Confidence            9999888776555555554  45  6667788777765 69999987766555554322    35567777889999999


Q ss_pred             CCeEEEEeCCCCccccccccCcccccceEEEeecCCC------CCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCC
Q psy12911        179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKK------KQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSN  252 (356)
Q Consensus       179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  252 (356)
                      ||.|++||+.++..... ....|...+.+++|+|...      .++.++++|+.|+.|++|+++... +.+..+.+|.. 
T Consensus       183 dg~i~i~d~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~-~~~~~~~~h~~-  259 (287)
T d1pgua2         183 MGKILLYDLQSREVKTS-RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKD-  259 (287)
T ss_dssp             TSCEEEEETTTTEEEEC-CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-CCEEETTSSTT-
T ss_pred             cccccceeecccccccc-cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC-eEEEEeCCCCC-
Confidence            99999999988754332 2335778899999998742      346789999999999999987542 45666677877 


Q ss_pred             CCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        253 GGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       253 ~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                                .|++++|+|++ .|++++.||.|++|++
T Consensus       260 ----------~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         260 ----------GVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ----------CEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ----------CeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                      89999999986 5888999999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.1e-25  Score=192.62  Aligned_cols=307  Identities=9%  Similarity=-0.024  Sum_probs=201.8

Q ss_pred             CCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeee---eccCCcceeEEEEccCCCeE
Q psy12911         15 TPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKS---MQGMSEPVLDVAWIDDGTKV   91 (356)
Q Consensus        15 ~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l   91 (356)
                      +....+.+..+..|. .+..++|+|||   ++|++++.|++|++||+.+........   ..+|...+.+++|+|||++|
T Consensus        48 D~~t~~~~~~l~~g~-~~~~vafSPDG---k~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l  123 (426)
T d1hzua2          48 DGDSKKIVKVIDTGY-AVHISRMSASG---RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT  123 (426)
T ss_dssp             ETTTCSEEEEEECCS-SEEEEEECTTS---CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEE
T ss_pred             ECCCCcEEEEEeCCC-CeeEEEECCCC---CEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEE
Confidence            445667777787764 69999999999   999999999999999998854333233   33567778888899999987


Q ss_pred             EEE-cCCCeEEEEEcCCCceee-ecccCC-----------CeeEEEEEeCCCCCeEEEEEC-CCeEEEEeCCCCCce--E
Q psy12911         92 FMA-GCDKTVKCWDLASNQSMQ-VAQHDA-----------PVKTCHWIKAPNYTCLMTGSW-DKTLKFWDLRTPQPI--M  155 (356)
Q Consensus        92 ~~~-~~dg~i~vwd~~~~~~~~-~~~~~~-----------~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~--~  155 (356)
                      +++ ..++.+++||..+++... ...|..           ....+.++  +++..++.... .+.+.+++......+  .
T Consensus       124 ~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s--~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~  201 (426)
T d1hzua2         124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS--HEHPEFIVNVKETGKVLLVNYKDIDNLTVT  201 (426)
T ss_dssp             EEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC--SSSSEEEEEETTTTEEEEEECSSSSSCEEE
T ss_pred             EEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEEC--CCCCEEEEecCCCCeEEEEEeccccceeeE
Confidence            655 468999999999988765 333333           33444555  55555444433 345556665554432  2


Q ss_pred             EEeCCCe--eEEEecCCCeEEEEe-cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911        156 TINLPER--CYCADVDYPLAVVGT-AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI  232 (356)
Q Consensus       156 ~~~~~~~--~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i  232 (356)
                      .+.....  .+.+++.+.+++++. .+..+.+++..++...................+...+.. ....+....++.+.+
T Consensus       202 ~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~v~~  280 (426)
T d1hzua2         202 SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG-PVWSTSHLGDGSISL  280 (426)
T ss_dssp             EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTE-EEEEEECTTTCEEEE
T ss_pred             EeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCC-ceEEeccCCCceEEE
Confidence            3333333  345566667666654 567899999988765433333333333444444444210 122234456888888


Q ss_pred             EEeCCCC-----CCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEE-------EcCCCeEEEEEcCcceecCCC-
Q psy12911        233 QYVNPAN-----PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLAT-------VGSEGTFSFWDKDARTKLKPS-  299 (356)
Q Consensus       233 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~-  299 (356)
                      |+.....     .+...++.+|..           .+..++|+|++++|++       ++.|++|+|||+.+++...++ 
T Consensus       281 ~~~~~~~~~~~~~~~~~~l~g~~~-----------~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~  349 (426)
T d1hzua2         281 IGTDPKNHPQYAWKKVAELQGQGG-----------GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL  349 (426)
T ss_dssp             EECCTTTCTTTBTSEEEEEECSSS-----------CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred             eeccccccccccceEeEEEecCCC-----------ceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEe
Confidence            8875432     234556777766           7999999999999994       556889999999988765543 


Q ss_pred             --------CCCccceEEEEECCCCCEEEEEec--cCCcCCCccCCCCCCc
Q psy12911        300 --------EAMDMSISTCALNHNGQIFAYAVS--YDWSKGHEHNNPNKGN  339 (356)
Q Consensus       300 --------~~~~~~v~~~~~s~~~~~l~~~s~--~d~~~~~~~~~~~~~~  339 (356)
                              ..|...|..++|||||++++.+..  .+-.....+||.+..+
T Consensus       350 ~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         350 PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             CHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred             ccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence                    355667999999999998865431  2223335566665443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=3.6e-23  Score=168.40  Aligned_cols=270  Identities=14%  Similarity=0.075  Sum_probs=193.6

Q ss_pred             EEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEE-EEcCCCeEEEEEcCCCceeeecccCCCeeEEEE
Q psy12911         47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVF-MAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHW  125 (356)
Q Consensus        47 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~  125 (356)
                      .++++.|++|.|||+++  .+.+.++.. ...+..++|+|||++|+ +++.++.|++||+.+++.+........+..+.|
T Consensus         5 yV~~~~~~~v~v~D~~t--~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~   81 (301)
T d1l0qa2           5 YIANSESDNISVIDVTS--NKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV   81 (301)
T ss_dssp             EEEETTTTEEEEEETTT--TEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             EEEECCCCEEEEEECCC--CeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccc
Confidence            34567899999999988  345566653 35578999999999875 666789999999999998875444556789999


Q ss_pred             EeCCCCCeEEE-EECCCeEEEEeCCCCCceEEEeCCCee--EEEecCCCeEE-EEecCCeEEEEeCCCCccccccccCcc
Q psy12911        126 IKAPNYTCLMT-GSWDKTLKFWDLRTPQPIMTINLPERC--YCADVDYPLAV-VGTAGRGIVLYQLEGKPQEFKKTESPL  201 (356)
Q Consensus       126 ~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~  201 (356)
                      +  +++..+++ +..++.+.+|+..+++....+..+...  ..+++++..++ ++..++.+.+|+..+.......   ..
T Consensus        82 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  156 (301)
T d1l0qa2          82 S--PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV---SV  156 (301)
T ss_dssp             C--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---EC
T ss_pred             c--cccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeec---cc
Confidence            9  88876554 556778999999999988888877654  44555666554 5566889999999887533222   23


Q ss_pred             cccceEEEeecCCCCCCCeEEEeecC-CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911        202 KYQNRCIAIFRDKKKQPAGYGLGSVE-GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG  280 (356)
Q Consensus       202 ~~~i~~~~~~~~~~~~~~~~~~~~~d-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~  280 (356)
                      ...+..++++|+    +..++++..+ +.+.+|+....  .....+..+.            ....++|++++..++.++
T Consensus       157 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------------~~~~~~~~~~g~~~~v~~  218 (301)
T d1l0qa2         157 GRSPKGIAVTPD----GTKVYVANFDSMSISVIDTVTN--SVIDTVKVEA------------APSGIAVNPEGTKAYVTN  218 (301)
T ss_dssp             CSSEEEEEECTT----SSEEEEEETTTTEEEEEETTTT--EEEEEEECSS------------EEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEeecc----ccceeeecccccccccccccce--eeeecccccC------------Ccceeecccccccccccc
Confidence            345788999998    5666666655 55666665443  2233333332            578899999998876554


Q ss_pred             ---CCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCceeeecc
Q psy12911        281 ---SEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRP  345 (356)
Q Consensus       281 ---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~~~~~  345 (356)
                         .++.|++||+.+++.+..+..+ ..+.+++|+|||++|+++++.+  ....+|+...+..+...+
T Consensus       219 ~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~--~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         219 VDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFC--NTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEE
T ss_pred             ccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCC--CeEEEEECCCCeEEEEEe
Confidence               3478999999999988877643 4579999999999886555433  345567777665554333

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=5.9e-25  Score=187.89  Aligned_cols=312  Identities=9%  Similarity=-0.063  Sum_probs=197.7

Q ss_pred             CCCCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeee---eccCCcceeEEEEccCCCe
Q psy12911         14 STPNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKS---MQGMSEPVLDVAWIDDGTK   90 (356)
Q Consensus        14 ~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~   90 (356)
                      .+....+.+..+..|. .+..++|||||   ++|++++.|+.|++||+.+........   ...|.+.+.+..|+|||++
T Consensus        47 ~D~~t~~v~~~~~~g~-~~~~v~fSpDG---~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~  122 (432)
T d1qksa2          47 IDGSTYEIKTVLDTGY-AVHISRLSASG---RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY  122 (432)
T ss_dssp             EETTTCCEEEEEECSS-CEEEEEECTTS---CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred             EECCCCcEEEEEeCCC-CeeEEEECCCC---CEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCE
Confidence            3556677778887764 69999999999   999999999999999998754433333   3356677777888999998


Q ss_pred             E-EEEcCCCeEEEEEcCCCceeee-c-----------ccCCCeeEEEEEeCCCCCeE-EEEECCCeEEEEeCCCCCceE-
Q psy12911         91 V-FMAGCDKTVKCWDLASNQSMQV-A-----------QHDAPVKTCHWIKAPNYTCL-MTGSWDKTLKFWDLRTPQPIM-  155 (356)
Q Consensus        91 l-~~~~~dg~i~vwd~~~~~~~~~-~-----------~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~-  155 (356)
                      | ++++.++.|++||..+++.+.. .           .+......+.++  +++..+ ++...++.|.+||..+.+... 
T Consensus       123 l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s--~dg~~~~vs~~~~~~i~~~d~~~~~~~~~  200 (432)
T d1qksa2         123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS--HYRPEFIVNVKETGKILLVDYTDLNNLKT  200 (432)
T ss_dssp             EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC--SSSSEEEEEETTTTEEEEEETTCSSEEEE
T ss_pred             EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEEC--CCCCEEEEEEccCCeEEEEEccCCCcceE
Confidence            6 6677799999999999887652 2           245566778888  777765 555667999999998877544 


Q ss_pred             -EEeCCC--eeEEEecCCCeEEEEec-CCeEEEEeCCCCcccccccc---CcccccceEEEeecCCCCCCCeEEEe-ecC
Q psy12911        156 -TINLPE--RCYCADVDYPLAVVGTA-GRGIVLYQLEGKPQEFKKTE---SPLKYQNRCIAIFRDKKKQPAGYGLG-SVE  227 (356)
Q Consensus       156 -~~~~~~--~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~-~~d  227 (356)
                       .+....  ..+.+++++.++++++. ++.+.++|..+.........   ..+............    +...... ..+
T Consensus       201 ~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----g~~~~~~~lg~  276 (432)
T d1qksa2         201 TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF----GPVWATSHMGD  276 (432)
T ss_dssp             EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTT----EEEEEEEBSSS
T ss_pred             EEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCC----CceecccccCC
Confidence             444333  35677888887766655 56899999887643222111   011111222222211    2222222 236


Q ss_pred             CeEEEEEeCCCCC-----CCcceeeeecCCCC-CC-------------CcccccceEEEEEeCCCCEEEEEcCCCeEEEE
Q psy12911        228 GRVAIQYVNPANP-----KDNFTFKCHRSNGG-AG-------------GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFW  288 (356)
Q Consensus       228 g~i~i~~~~~~~~-----~~~~~~~~~~~~~~-~~-------------~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iw  288 (356)
                      +.+.+|.......     +....+..+..... ..             ...+......+++ ||++.|++++.|+.+++|
T Consensus       277 ~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w  355 (432)
T d1qksa2         277 DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTL  355 (432)
T ss_dssp             SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEE
T ss_pred             ceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEec
Confidence            6677776543321     11111111111000 00             0000001233454 899999999999999999


Q ss_pred             EcCcceecCCCCCCccceEEEEECCCCCEEEEEecc--CCcCCCccCCCCCCc
Q psy12911        289 DKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY--DWSKGHEHNNPNKGN  339 (356)
Q Consensus       289 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~--d~~~~~~~~~~~~~~  339 (356)
                      ++.++..   +..|...|.+++|||||++|+++...  +-+....+||.+..+
T Consensus       356 ~~~~~~~---l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k  405 (432)
T d1qksa2         356 PIAEWAG---ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE  405 (432)
T ss_dssp             CHHHHHT---CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             ccccccc---cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence            9876533   34577789999999999999776522  122234456665443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=6.3e-22  Score=160.92  Aligned_cols=255  Identities=16%  Similarity=0.079  Sum_probs=188.1

Q ss_pred             CCCCCceEEeCCCCCCeeEEEecCCCCCceEE-EEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEE-E
Q psy12911         16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFL-IAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVF-M   93 (356)
Q Consensus        16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~   93 (356)
                      ....+.+..+... ..+..++|+|+|   ++| ++++.++.|++||+.+  ......+..+. .+..++|++++..++ +
T Consensus        19 ~~t~~~~~~i~~g-~~p~~va~spdG---~~l~v~~~~~~~i~v~d~~t--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   91 (301)
T d1l0qa2          19 VTSNKVTATIPVG-SNPMGAVISPDG---TKVYVANAHSNDVSIIDTAT--NNVIATVPAGS-SPQGVAVSPDGKQVYVT   91 (301)
T ss_dssp             TTTTEEEEEEECS-SSEEEEEECTTS---SEEEEEEGGGTEEEEEETTT--TEEEEEEECSS-SEEEEEECTTSSEEEEE
T ss_pred             CCCCeEEEEEECC-CCceEEEEeCCC---CEEEEEECCCCEEEEEECCC--Cceeeeeeccc-ccccccccccccccccc
Confidence            3444555555433 457899999999   766 5667889999999987  34446666554 468899999998665 4


Q ss_pred             EcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEE-EECCCeEEEEeCCCCCceEEEeCCCee--EEEecCC
Q psy12911         94 AGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMT-GSWDKTLKFWDLRTPQPIMTINLPERC--YCADVDY  170 (356)
Q Consensus        94 ~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~  170 (356)
                      +..++.+.+|+..+++......+.....++.|+  +++..++. +..++.+.+|+..+.+.+..+......  +.+.+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (301)
T d1l0qa2          92 NMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS--PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDG  169 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECSSSEEEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTS
T ss_pred             ccccceeeecccccceeeeeccccccceEEEee--cCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccc
Confidence            556789999999999888877777888999999  88887754 456788999999999988888876654  4455566


Q ss_pred             CeEEEEecC-CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec---CCeEEEEEeCCCCCCCccee
Q psy12911        171 PLAVVGTAG-RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV---EGRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       171 ~~~~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---dg~i~i~~~~~~~~~~~~~~  246 (356)
                      ..++++..+ +.+.+|+..........   .....+..++++++    +..++++..   ++.|++||....  +.+..+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~v~v~D~~t~--~~~~~~  240 (301)
T d1l0qa2         170 TKVYVANFDSMSISVIDTVTNSVIDTV---KVEAAPSGIAVNPE----GTKAYVTNVDKYFNTVSMIDTGTN--KITARI  240 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEE---ECSSEEEEEEECTT----SSEEEEEEECSSCCEEEEEETTTT--EEEEEE
T ss_pred             cceeeecccccccccccccceeeeecc---cccCCcceeecccc----ccccccccccceeeeeeeeecCCC--eEEEEE
Confidence            667666654 67777777665322211   22345678889998    566655543   467999998765  445555


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCCCEE-EEEcCCCeEEEEEcCcceecCCCC
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTL-ATVGSEGTFSFWDKDARTKLKPSE  300 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~  300 (356)
                      ..+.            .+.+++|+|||++| ++++.|+.|++||+++++.+.++.
T Consensus       241 ~~~~------------~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         241 PVGP------------DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ECCS------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cCCC------------CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            5443            58999999999876 678889999999999999887764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=9e-23  Score=168.60  Aligned_cols=275  Identities=8%  Similarity=0.016  Sum_probs=189.2

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeecc--CCcceeEEEEccCCCeEE-EEcCCCeEEEEEcCCCceee-eccc----
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQG--MSEPVLDVAWIDDGTKVF-MAGCDKTVKCWDLASNQSMQ-VAQH----  116 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~-~~~~----  116 (356)
                      ++|++++.|++|+|||+.+  ...+..+..  +...+.+++|+|||++++ +++.++.|.+||+.+++.+. ...+    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s--~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK--MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT--TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCC--CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            7899999999999999998  344455543  445688999999999874 66779999999999998875 3222    


Q ss_pred             -CCCeeEEEEEeCCCCCeEEEEE------------CCCeEEEEeCCCCCceEEEeCCCe--eEEEecCCCeEEEEecCCe
Q psy12911        117 -DAPVKTCHWIKAPNYTCLMTGS------------WDKTLKFWDLRTPQPIMTINLPER--CYCADVDYPLAVVGTAGRG  181 (356)
Q Consensus       117 -~~~v~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~  181 (356)
                       ...+..++|+  |++++++++.            .+..+.+||..+++.+..+..+..  .+.+++++..+++++.  .
T Consensus        80 ~~~~~~~v~~s--~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~  155 (337)
T d1pbyb_          80 RVKSLFGAALS--PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--D  155 (337)
T ss_dssp             EEECTTCEEEC--TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--S
T ss_pred             cccceeeEEEc--CCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--C
Confidence             3345678999  9999988876            357899999999998888886654  5667777888888764  4


Q ss_pred             EEEEeCCCCccccccccCcc----cccceEEEeecCCCC-------------CCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911        182 IVLYQLEGKPQEFKKTESPL----KYQNRCIAIFRDKKK-------------QPAGYGLGSVEGRVAIQYVNPANPKDNF  244 (356)
Q Consensus       182 i~i~d~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~-------------~~~~~~~~~~dg~i~i~~~~~~~~~~~~  244 (356)
                      +.+||..+............    ........+.+....             .......+..++.+.+|+...... ...
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  234 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-AMR  234 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-EEE
T ss_pred             cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE-EEE
Confidence            67899887643222111000    000011111111000             012223344456677887765421 112


Q ss_pred             eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911        245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                      .+..+..           .+..++++|++.+++.+  ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.+
T Consensus       235 ~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~  300 (337)
T d1pbyb_         235 EVRIMDV-----------FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             EEEECSS-----------CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBS
T ss_pred             EecCCCc-----------ceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCC
Confidence            2333333           68889999999998876  5899999999999888775 56678999999999999998743


Q ss_pred             CCcCCCccCCCCCCceeee
Q psy12911        325 DWSKGHEHNNPNKGNAIFL  343 (356)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~  343 (356)
                         ....+|+....+.+..
T Consensus       301 ---~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         301 ---GDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             ---SEEEEEETTTCCEEEE
T ss_pred             ---CcEEEEECCCCcEEEE
Confidence               3466777776665543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.1e-22  Score=168.03  Aligned_cols=255  Identities=9%  Similarity=-0.002  Sum_probs=181.4

Q ss_pred             CCCCceEEeCC--CCCCeeEEEecCCCCCceEE-EEEeCCCeEEEEeccCCCceeeeeeccC-----CcceeEEEEccCC
Q psy12911         17 NPNKDFEVVSP--PEDSISCMAFSPSTLPQYFL-IAGSWDNNVRCWEVEPNGKTIPKSMQGM-----SEPVLDVAWIDDG   88 (356)
Q Consensus        17 ~~~~~~~~~~~--h~~~V~~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~   88 (356)
                      ...+.+..+..  +...+.+++|+|||   ++| ++++.++.|.+||+.++.  ....+..+     ...+..++|+|++
T Consensus        19 ~s~~~~~~i~~~~~~~~~~~i~~spDg---~~l~v~~~~~~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~v~~s~dg   93 (337)
T d1pbyb_          19 EKMAVDKVITIADAGPTPMVPMVAPGG---RIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAALSPDG   93 (337)
T ss_dssp             TTTEEEEEEECTTCTTCCCCEEECTTS---SEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEEECTTS
T ss_pred             CCCeEEEEEECCCCCCCccEEEECCCC---CEEEEEECCCCeEEEEECCCCc--EEEEEecCCCcccccceeeEEEcCCC
Confidence            34455555543  44568899999999   776 566789999999999833  33444333     2346689999999


Q ss_pred             CeEEEEc------------CCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEE
Q psy12911         89 TKVFMAG------------CDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMT  156 (356)
Q Consensus        89 ~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  156 (356)
                      ++++++.            .+..+.+||..+++......+...+..++|+  ++++++++++.  .+.+||..+++....
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~--~~~~~d~~~~~~~~~  169 (337)
T d1pbyb_          94 KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWA--RDGSKLYGLGR--DLHVMDPEAGTLVED  169 (337)
T ss_dssp             SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEEC--TTSSCEEEESS--SEEEEETTTTEEEEE
T ss_pred             cEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEc--CCCCEEEEEcC--CcceeeeecCcEEEE
Confidence            9998875            3578999999999988866677788999999  99999999864  478899999888877


Q ss_pred             EeCCCee--EEEecC------------------------CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEe
Q psy12911        157 INLPERC--YCADVD------------------------YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAI  210 (356)
Q Consensus       157 ~~~~~~~--~~~~~~------------------------~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  210 (356)
                      +..+...  ....+.                        ......+..++.+.+|+...+....... .++......+.+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  248 (337)
T d1pbyb_         170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV-RIMDVFYFSTAV  248 (337)
T ss_dssp             ECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE-EECSSCEEEEEE
T ss_pred             eecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe-cCCCcceEEEEe
Confidence            7653310  011111                        1111222335578888888765333222 234556677888


Q ss_pred             ecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911        211 FRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK  290 (356)
Q Consensus       211 ~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~  290 (356)
                      +++    +..++.+  ++.+++||+...  +.+..+.. ..           .+.+++|+|||++|++++.|+.|+|||.
T Consensus       249 ~~~----~~~~~~~--~~~i~v~d~~~~--~~~~~~~~-~~-----------~~~~~~~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         249 NPA----KTRAFGA--YNVLESFDLEKN--ASIKRVPL-PH-----------SYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             CTT----SSEEEEE--ESEEEEEETTTT--EEEEEEEC-SS-----------CCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             ccc----ceEEEEc--cccEEEEECCCC--cEEEEEcC-CC-----------CEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            887    5555443  688999999765  44444433 22           6889999999999999999999999999


Q ss_pred             CcceecCCCCC
Q psy12911        291 DARTKLKPSEA  301 (356)
Q Consensus       291 ~~~~~~~~~~~  301 (356)
                      .+++.+.+++.
T Consensus       309 ~t~~~v~~i~~  319 (337)
T d1pbyb_         309 ETLEKKGQVDL  319 (337)
T ss_dssp             TTCCEEEEEEC
T ss_pred             CCCcEEEEEEC
Confidence            99998877754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=1.7e-22  Score=167.56  Aligned_cols=284  Identities=12%  Similarity=0.041  Sum_probs=186.5

Q ss_pred             EEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec-cCCcceeEEEEccCCCeEE-EEcCCCeEEEEEcCCCceee
Q psy12911         35 MAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-GMSEPVLDVAWIDDGTKVF-MAGCDKTVKCWDLASNQSMQ  112 (356)
Q Consensus        35 ~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~  112 (356)
                      ++|++++   ++|++++.|++|.|||+.+  .+++..+. .|...+.+++|+|||++++ ++..++.|.+||+.+++.+.
T Consensus         2 ~a~~~~~---~~l~~~~~~~~v~v~D~~t--~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_           2 PALKAGH---EYMIVTNYPNNLHVVDVAS--DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             CCCCTTC---EEEEEEETTTEEEEEETTT--TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccCCCCC---cEEEEEcCCCEEEEEECCC--CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee
Confidence            4688998   9999999999999999988  35556655 4566789999999999875 55678999999999998765


Q ss_pred             ecc-------cCCCeeEEEEEeCCCCCeEEEEE------------CCCeEEEEeCCCCCceEE---EeCCCee-EEEecC
Q psy12911        113 VAQ-------HDAPVKTCHWIKAPNYTCLMTGS------------WDKTLKFWDLRTPQPIMT---INLPERC-YCADVD  169 (356)
Q Consensus       113 ~~~-------~~~~v~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~---~~~~~~~-~~~~~~  169 (356)
                      ...       +...+..++|+  +||+++++++            .++.+.+||..+++....   ...+... ......
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~s--~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T d1jmxb_          77 HANLSSVPGEVGRSMYSFAIS--PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  154 (346)
T ss_dssp             EEESCCSTTEEEECSSCEEEC--TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             eecccccccccCCceEEEEEe--cCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC
Confidence            221       22346788999  9999888765            467899999888754433   2222222 122222


Q ss_pred             CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCC----------------------CCCCeEEEeecC
Q psy12911        170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKK----------------------KQPAGYGLGSVE  227 (356)
Q Consensus       170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------~~~~~~~~~~~d  227 (356)
                      ...+++.  ++.+.+|++.+........   .......+.++|+..                      .....+.++..+
T Consensus       155 ~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (346)
T d1jmxb_         155 DGSLYVA--GPDIYKMDVKTGKYTVALP---LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL  229 (346)
T ss_dssp             TSCEEEE--SSSEEEECTTTCCEEEEEC---STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred             CCEEEEe--CCcceEEEccCCCEEEEEe---cCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCC
Confidence            2333333  3557888887654322111   111122222333310                      002223344455


Q ss_pred             CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceE
Q psy12911        228 GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSIS  307 (356)
Q Consensus       228 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  307 (356)
                      ..+.+|++..... ....+..+..           .+..+.+++++.+++.... +.|++||..+++.+..+. +...+.
T Consensus       230 ~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~  295 (346)
T d1jmxb_         230 YGYLSVDLKTGKT-HTQEFADLTE-----------LYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYY  295 (346)
T ss_dssp             EEEEEEETTTCCE-EEEEEEECSS-----------CEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCC
T ss_pred             ceEEEEECCCCce-EEEEeecccc-----------eeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEE
Confidence            6677777655421 1222334443           6888999999888877654 579999999999887775 445789


Q ss_pred             EEEECCCCCEEEEEeccCCcCCCccCCCCCCceeeecccc
Q psy12911        308 TCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCF  347 (356)
Q Consensus       308 ~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~~~~~~~  347 (356)
                      +++|||||++|++++.+   ....+||....+.+.--+++
T Consensus       296 ~va~s~DG~~l~v~~~d---~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         296 CVAFDKKGDKLYLGGTF---NDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             EEEECSSSSCEEEESBS---SEEEEEETTTTEEEEEEECS
T ss_pred             EEEEcCCCCEEEEEeCC---CcEEEEECccCCEEEEEECC
Confidence            99999999999999743   45778888877766544443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=2e-22  Score=172.35  Aligned_cols=256  Identities=10%  Similarity=-0.001  Sum_probs=168.1

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee------ecccCC
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ------VAQHDA  118 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~------~~~~~~  118 (356)
                      -++++.+.||+|+|||+.+  .+.+..+..|. .+..++|+|||++|++++.|++|++||+.+++...      ..+|..
T Consensus        33 ~~~V~~~~dg~v~vwD~~t--~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDS--KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             EEEEEETTTTEEEEEETTT--CSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             EEEEEEcCCCEEEEEECCC--CcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence            3567788899999999998  34556777664 58999999999999999999999999999887543      124555


Q ss_pred             CeeEEEEEeCCCCCeEEE-EECCCeEEEEeCCCCCceEEEeCCCee---EEEecCCC-eEEEEecC-----------CeE
Q psy12911        119 PVKTCHWIKAPNYTCLMT-GSWDKTLKFWDLRTPQPIMTINLPERC---YCADVDYP-LAVVGTAG-----------RGI  182 (356)
Q Consensus       119 ~v~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~d-----------~~i  182 (356)
                      .+.+++|+  |||+++++ +..++.+++||..+++.+..+..+...   ..+...+. ..++.+.+           +.+
T Consensus       110 ~~~s~~~s--pDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i  187 (426)
T d1hzua2         110 VESSKFKG--YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  187 (426)
T ss_dssp             EEECCSTT--CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             eEEeeeec--CCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            56666777  89998654 557899999999999988877755421   12222222 22233333           444


Q ss_pred             EEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccc
Q psy12911        183 VLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDI  261 (356)
Q Consensus       183 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (356)
                      .+++....... ..........+..+.++|+    +.+++++. .+..+.+++....  +.+..........        
T Consensus       188 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----g~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--------  252 (426)
T d1hzua2         188 LLVNYKDIDNL-TVTSIGAAPFLADGGWDSS----HRYFMTAANNSNKVAVIDSKDR--RLSALVDVGKTPH--------  252 (426)
T ss_dssp             EEEECSSSSSC-EEEEEECCSSEEEEEECTT----SCEEEEEETTCSEEEEEETTTT--EEEEEEECSSCCC--------
T ss_pred             EEEEeccccce-eeEEeccCCccEeeeECCC----CcEEEeeeecccceeeeecccc--cEEEEeccCCccc--------
Confidence            44444333211 1111234566788999999    56665554 5666788887655  3333332221110        


Q ss_pred             cceEEEEEeCCCC---EEEEEcCCCeEEEEEcCc-------ceecCCCCCCccceEEEEECCCCCEEEEE
Q psy12911        262 YAVNGIVFHPVHG---TLATVGSEGTFSFWDKDA-------RTKLKPSEAMDMSISTCALNHNGQIFAYA  321 (356)
Q Consensus       262 ~~i~~i~~sp~~~---~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  321 (356)
                       +.....+.+.+.   ..++.+.|+.+.+|+...       ++....+.+|...+..++|+||+++|++.
T Consensus       253 -~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~  321 (426)
T d1hzua2         253 -PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD  321 (426)
T ss_dssp             -CSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEEC
T ss_pred             -ccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEe
Confidence             222333333332   223445678888887654       35667788999999999999999999964

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2.6e-20  Score=153.56  Aligned_cols=272  Identities=10%  Similarity=0.079  Sum_probs=179.8

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-CCCeEEEEEcCCCceee----ecccCCC
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWDLASNQSMQ----VAQHDAP  119 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~----~~~~~~~  119 (356)
                      ..+++++.|++|+||+++..+.........|.+.+..|+|+|||++|++++ .|+.|++|++.......    ...+...
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            345777799999999998654433233345889999999999999986554 58999999998654321    2334566


Q ss_pred             eeEEEEEeCCCCCeEEEEEC-CCeEEEEeCCCCCceEEEe---CCC--eeEEEecCCCeEEEEe-cCCeEEEEeCCCCcc
Q psy12911        120 VKTCHWIKAPNYTCLMTGSW-DKTLKFWDLRTPQPIMTIN---LPE--RCYCADVDYPLAVVGT-AGRGIVLYQLEGKPQ  192 (356)
Q Consensus       120 v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~  192 (356)
                      +..++|+  |||++|++++. ++.|.+|+...........   ...  ..+.+++++..++++. .+..|.+|+......
T Consensus        85 p~~l~~s--pDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~  162 (333)
T d1ri6a_          85 LTHISTD--HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  162 (333)
T ss_dssp             CSEEEEC--TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             ceEEEEc--CCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence            7889999  99999998885 6789999887665443332   222  3466777888776665 457899999877543


Q ss_pred             cccc----ccCcccccceEEEeecCCCCCCCeEE-EeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEE
Q psy12911        193 EFKK----TESPLKYQNRCIAIFRDKKKQPAGYG-LGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGI  267 (356)
Q Consensus       193 ~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  267 (356)
                      ....    ...........++++++    +..++ +....+...++++.................   ...........+
T Consensus       163 ~~~~~~~~~~~~~g~~p~~i~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  235 (333)
T d1ri6a_         163 LVAQDPAEVTTVEGAGPRHMVFHPN----EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP---ENFSDTRWAADI  235 (333)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTT----SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC---TTCCSCCCEEEE
T ss_pred             ceeeeceeeeeecCCCccEEEEecc----ceeEEeeccccCceEEEeecccccceeeeeeeeeee---cCCCccccceeE
Confidence            2211    12223345678999998    44544 445667788888765532221111111110   011111256788


Q ss_pred             EEeCCCCEEE-EEcCCCeEEEEEcCcceecCCCC---CCccceEEEEECCCCCEEEEEeccC
Q psy12911        268 VFHPVHGTLA-TVGSEGTFSFWDKDARTKLKPSE---AMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       268 ~~sp~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      ++++++++++ ++..++.+.+|++........+.   .....+.+++|+|||++|++++.++
T Consensus       236 ~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~  297 (333)
T d1ri6a_         236 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS  297 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT
T ss_pred             EEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC
Confidence            9999997655 45667899999987654333322   2345678899999999998887654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.6e-20  Score=160.14  Aligned_cols=259  Identities=11%  Similarity=-0.039  Sum_probs=165.1

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee--e----cccCC
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ--V----AQHDA  118 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~----~~~~~  118 (356)
                      -++++.+.||+|.|||..+  ..++..+..+ ..+..++|||||+++++++.|+.|++||+.+++...  .    ..|.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t--~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGST--YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             EEEEEETTTTEEEEEETTT--CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             EEEEEEcCCCEEEEEECCC--CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            4568899999999999988  4455677666 469999999999999999999999999998876432  1    23445


Q ss_pred             CeeEEEEEeCCCCCeE-EEEECCCeEEEEeCCCCCceEEEeCCCe--------------eEEEecCCCeE-EEEecCCeE
Q psy12911        119 PVKTCHWIKAPNYTCL-MTGSWDKTLKFWDLRTPQPIMTINLPER--------------CYCADVDYPLA-VVGTAGRGI  182 (356)
Q Consensus       119 ~v~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------------~~~~~~~~~~~-~~~~~d~~i  182 (356)
                      .+.+..|+  |||++| ++++.++.|++||..+++.+..+..+..              .+..+.++..+ ++...++.|
T Consensus       110 ~~~s~~~S--pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         110 IETSKMEG--WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEECCSTT--CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             eEEecccC--CCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            55555666  899876 6788899999999999999888765321              23445566654 556667999


Q ss_pred             EEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccc
Q psy12911        183 VLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDI  261 (356)
Q Consensus       183 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (356)
                      .+||......... ........+..++++|+    +.++++++ .++.+.+++.+..  +....+.......      +.
T Consensus       188 ~~~d~~~~~~~~~-~~i~~g~~~~~~~~spd----g~~~~va~~~~~~v~v~d~~~~--~~~~~~~~g~~~~------~~  254 (432)
T d1qksa2         188 LLVDYTDLNNLKT-TEISAERFLHDGGLDGS----HRYFITAANARNKLVVIDTKEG--KLVAIEDTGGQTP------HP  254 (432)
T ss_dssp             EEEETTCSSEEEE-EEEECCSSEEEEEECTT----SCEEEEEEGGGTEEEEEETTTT--EEEEEEECSSSSB------CC
T ss_pred             EEEEccCCCcceE-EEEcccCccccceECCC----CCEEEEeccccceEEEeecccc--eEEEEeccCcccc------cc
Confidence            9999887543211 11134456789999999    67666665 4567788887654  2222221111000      00


Q ss_pred             cceEEEEEeCCCCEEEEEc-CCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        262 YAVNGIVFHPVHGTLATVG-SEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       262 ~~i~~i~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                      .......+...+...++.. .++.|.+|+.....    ...|...|....++|++..+++++.++
T Consensus       255 ~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~  315 (432)
T d1qksa2         255 GRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPN  315 (432)
T ss_dssp             TTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred             CcccceecCCCCceecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCC
Confidence            0223333333344443332 35666666654321    223444555555666655555555443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.87  E-value=2.4e-19  Score=150.24  Aligned_cols=266  Identities=12%  Similarity=0.053  Sum_probs=160.0

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEE-----eCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc----
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAG-----SWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG----   95 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----   95 (356)
                      ...+.+++.+++++|+|   +.+++.     +..+.|.+||..++  +.+..+..+..+  .++|+|||++|++++    
T Consensus        16 ~~~~~~p~~~~a~spdg---~~~~~~~~~~~~~~~~v~v~D~~tg--~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~   88 (373)
T d2madh_          16 AGAADGPTNDEAPGADG---RRSYINLPAHHSAIIQQWVLDAGSG--SILGHVNGGFLP--NPVAAHSGSEFALASTSFS   88 (373)
T ss_pred             cccCCCCccccccCCCC---CEEEEEcccccCCCceEEEEECCCC--CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCC
Confidence            34688999999999999   777654     23467999998873  344566555443  799999999998875    


Q ss_pred             ------CCCeEEEEEcCCCceeee-cccCCC-------eeEEEEEeCCCCCeEEEEE--CCCeEEEEeCCCCCceEEEeC
Q psy12911         96 ------CDKTVKCWDLASNQSMQV-AQHDAP-------VKTCHWIKAPNYTCLMTGS--WDKTLKFWDLRTPQPIMTINL  159 (356)
Q Consensus        96 ------~dg~i~vwd~~~~~~~~~-~~~~~~-------v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~  159 (356)
                            .++.|.+||..+++.+.. ..+...       ...+.|+  ++++.++...  .++.+.+|+....+.......
T Consensus        89 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  166 (373)
T d2madh_          89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT--PNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS  166 (373)
T ss_pred             cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEE--eCCCcEEEEEEcCCCceEEeeccCCeEEEEecc
Confidence                  357899999999887642 222221       2335555  5555444332  334566666655544443332


Q ss_pred             CCeeEEEecCCC-eEEEEecCCeEEEEeCCCCccccc-------------------------------------------
Q psy12911        160 PERCYCADVDYP-LAVVGTAGRGIVLYQLEGKPQEFK-------------------------------------------  195 (356)
Q Consensus       160 ~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~-------------------------------------------  195 (356)
                      +. ...+.+++. .+++.+.|+.+.+|+.........                                           
T Consensus       167 ~~-~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         167 PT-CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             ce-eEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCe
Confidence            22 223333333 233445555555555443221100                                           


Q ss_pred             ----cccCc----------ccccceEEEeecCCC------CCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        196 ----KTESP----------LKYQNRCIAIFRDKK------KQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       196 ----~~~~~----------~~~~i~~~~~~~~~~------~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                          .....          .......+++++++.      ..+..++....++.+.+||....  +.+..+....     
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~--~~~~~~~~~~-----  318 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--QTSSQISLGH-----  318 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC--cEEEEecCCC-----
Confidence                00000          001122233444411      01223344555667777777655  4444443222     


Q ss_pred             CCcccccceEEEEEeCCCC--EEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911        256 GGVQDIYAVNGIVFHPVHG--TLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                             .+..++|+|||+  ++++++.|+.|++||+.+++.+.++..+....+.+++.++
T Consensus       319 -------~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         319 -------DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             -------CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence                   688999999997  4578899999999999999999999988777788877554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=1.1e-19  Score=150.35  Aligned_cols=260  Identities=10%  Similarity=0.019  Sum_probs=175.9

Q ss_pred             CCCCCCceEEeC-CCCCCeeEEEecCCCCCceEE-EEEeCCCeEEEEeccCCCceeeeeecc------CCcceeEEEEcc
Q psy12911         15 TPNPNKDFEVVS-PPEDSISCMAFSPSTLPQYFL-IAGSWDNNVRCWEVEPNGKTIPKSMQG------MSEPVLDVAWID   86 (356)
Q Consensus        15 ~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~s~   86 (356)
                      +....+.+..+. .|...+.+++|+|||   +++ +++..++.|++||+.++  .....+..      +...+..++|+|
T Consensus        24 D~~t~~~~~t~~~~~~~~p~~l~~spDG---~~l~v~~~~~~~v~~~d~~t~--~~~~~~~~~~~~~~~~~~~~~v~~s~   98 (346)
T d1jmxb_          24 DVASDTVYKSCVMPDKFGPGTAMMAPDN---RTAYVLNNHYGDIYGIDLDTC--KNTFHANLSSVPGEVGRSMYSFAISP   98 (346)
T ss_dssp             ETTTTEEEEEEECSSCCSSCEEEECTTS---SEEEEEETTTTEEEEEETTTT--EEEEEEESCCSTTEEEECSSCEEECT
T ss_pred             ECCCCCEEEEEEcCCCCCcceEEECCCC---CEEEEEECCCCcEEEEeCccC--eeeeeecccccccccCCceEEEEEec
Confidence            344456666655 567788999999999   766 55667899999999883  22233321      223567899999


Q ss_pred             CCCeEEEEc------------CCCeEEEEEcCCCceee-e--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC
Q psy12911         87 DGTKVFMAG------------CDKTVKCWDLASNQSMQ-V--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP  151 (356)
Q Consensus        87 ~~~~l~~~~------------~dg~i~vwd~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  151 (356)
                      ||+++++++            .++.+.+|+..+++... +  ......+..+.++  +++.++++   ++.+.+||+.++
T Consensus        99 DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~  173 (346)
T d1jmxb_          99 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA--DDGSLYVA---GPDIYKMDVKTG  173 (346)
T ss_dssp             TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC--TTSCEEEE---SSSEEEECTTTC
T ss_pred             CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEec--CCCEEEEe---CCcceEEEccCC
Confidence            999988765            36789999998877654 2  2233456666666  66665554   256899999999


Q ss_pred             CceEEEeCCCee--EEEecCCC--------------------------eEEEEecCCeEEEEeCCCCccccccccCcccc
Q psy12911        152 QPIMTINLPERC--YCADVDYP--------------------------LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKY  203 (356)
Q Consensus       152 ~~~~~~~~~~~~--~~~~~~~~--------------------------~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  203 (356)
                      +.+..+..+...  ..+.+.+.                          .+..+..+..+.+||+.+........ ..+..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  252 (346)
T d1jmxb_         174 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF-ADLTE  252 (346)
T ss_dssp             CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE-EECSS
T ss_pred             CEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEe-ecccc
Confidence            988887654321  11111111                          12233445678888887765433322 23455


Q ss_pred             cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC
Q psy12911        204 QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG  283 (356)
Q Consensus       204 ~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg  283 (356)
                      .+..+.++++    +..++... ++.+.+||....  +.+..+... .           .+.+++|+|||++|++++.|+
T Consensus       253 ~~~~~~~~~~----~~~~~~~~-~~~v~v~d~~~~--~~~~~~~~~-~-----------~~~~va~s~DG~~l~v~~~d~  313 (346)
T d1jmxb_         253 LYFTGLRSPK----DPNQIYGV-LNRLAKYDLKQR--KLIKAANLD-H-----------TYYCVAFDKKGDKLYLGGTFN  313 (346)
T ss_dssp             CEEEEEECSS----CTTEEEEE-ESEEEEEETTTT--EEEEEEECS-S-----------CCCEEEECSSSSCEEEESBSS
T ss_pred             eeEEEEEeCC----CCEEEEec-CCeEEEEECCCC--cEEEEEcCC-C-----------CEEEEEEcCCCCEEEEEeCCC
Confidence            6777888887    45555544 467999998765  444444322 2           688999999999999999999


Q ss_pred             eEEEEEcCcceecCCCCCCcc
Q psy12911        284 TFSFWDKDARTKLKPSEAMDM  304 (356)
Q Consensus       284 ~i~iwd~~~~~~~~~~~~~~~  304 (356)
                      .|+|||..+++.+.+++.+.+
T Consensus       314 ~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         314 DLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             EEEEEETTTTEEEEEEECSSS
T ss_pred             cEEEEECccCCEEEEEECCCC
Confidence            999999999999887764443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=7.1e-20  Score=152.34  Aligned_cols=294  Identities=10%  Similarity=0.004  Sum_probs=190.3

Q ss_pred             CeeEEEecCCCCCceEEEEEe-----CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc----------
Q psy12911         31 SISCMAFSPSTLPQYFLIAGS-----WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG----------   95 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------   95 (356)
                      ++.-.+.+||+   +.+++..     .+..|.+||..++  .++..+..+.  ...++|+|||++|++++          
T Consensus         3 p~~~~a~spdg---~~~~v~~~~~~~~~~~v~v~D~~tg--~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~   75 (355)
T d2bbkh_           3 PRILEAPAPDA---RRVYVNDPAHFAAVTQQFVIDGEAG--RVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGE   75 (355)
T ss_dssp             CCBCCCCCCCT---TEEEEEECGGGCSSEEEEEEETTTT--EEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEE
T ss_pred             CcEeEeeCCCC---CEEEEEecccCCCcCeEEEEECCCC--cEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccC
Confidence            34444668998   7776653     4567999999873  4445665443  34799999999888653          


Q ss_pred             CCCeEEEEEcCCCceeee-cc-------cCCCeeEEEEEeCCCCCeEEEEE--CCCeEEEEeCCCCCceEEEeCCCeeEE
Q psy12911         96 CDKTVKCWDLASNQSMQV-AQ-------HDAPVKTCHWIKAPNYTCLMTGS--WDKTLKFWDLRTPQPIMTINLPERCYC  165 (356)
Q Consensus        96 ~dg~i~vwd~~~~~~~~~-~~-------~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~  165 (356)
                      .|+.|++||+.+++.+.. ..       .......++|+  ++++.++.+.  .+..+.+||..+++.+..+..+.....
T Consensus        76 ~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d2bbkh_          76 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT--PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI  153 (355)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC--TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEe--cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE
Confidence            478999999999987652 21       12334668899  9999887765  457899999999999988887765554


Q ss_pred             EecCCCeEEEEecCCeEEEEeCCCCcccccc----ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911        166 ADVDYPLAVVGTAGRGIVLYQLEGKPQEFKK----TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK  241 (356)
Q Consensus       166 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~  241 (356)
                      ........+..+.|+....+...........    ........+....+.++    +..++.++.++.+++|++......
T Consensus       154 ~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~  229 (355)
T d2bbkh_         154 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK----AGRLVWPTYTGKIHQIDLSSGDAK  229 (355)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT----TTEEEEEBTTSEEEEEECTTSSCE
T ss_pred             eecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCC----CCeEEEecCCCeEEEEecCCCcEE
Confidence            4444455555666666666555443211111    11122233455666766    678889999999999999876432


Q ss_pred             CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC----------CeEEEEEcCcceecCCCCCCccceEEEEE
Q psy12911        242 DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE----------GTFSFWDKDARTKLKPSEAMDMSISTCAL  311 (356)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~  311 (356)
                      .+.....+......... .......+++++++..++....+          ..|.+||..+++.+..+. +...+.+++|
T Consensus       230 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~  307 (355)
T d2bbkh_         230 FLPAVEALTEAERADGW-RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINV  307 (355)
T ss_dssp             ECCCEESSCHHHHHTTE-EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEE
T ss_pred             EEeccCCcccceEeeee-eccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEE
Confidence            22222222110000000 00123458899999887766443          479999999998887776 3456889999


Q ss_pred             CCCCCE-EEEEeccCCcCCCccCCCCCCcee
Q psy12911        312 NHNGQI-FAYAVSYDWSKGHEHNNPNKGNAI  341 (356)
Q Consensus       312 s~~~~~-l~~~s~~d~~~~~~~~~~~~~~~~  341 (356)
                      +|||+. |++++..  +....+||...++.+
T Consensus       308 spDG~~~l~v~~~~--d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         308 SQDEKPLLYALSTG--DKTLYIHDAESGEEL  336 (355)
T ss_dssp             CCSSSCEEEEEETT--TTEEEEEETTTCCEE
T ss_pred             cCCCCeEEEEEECC--CCEEEEEECCCCCEE
Confidence            999984 3333332  344666777766544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.8e-17  Score=136.18  Aligned_cols=250  Identities=11%  Similarity=0.124  Sum_probs=166.2

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEe-CCCeEEEEeccCCCceee-eeeccCCcceeEEEEccCCCeEEEEcC-CCeEEEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGS-WDNNVRCWEVEPNGKTIP-KSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKCW  103 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw  103 (356)
                      .|.+.|.+++|+|||   ++|++++ .|+.|++|++...+.... .....+...+..++|+|||++|++++. ++.|.+|
T Consensus        34 ~~~~~v~~la~spDG---~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDK---RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             ECSSCCCCEEECTTS---SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cCCCCEeEEEEeCCC---CEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence            578899999999999   8886555 589999999987443321 122234556788999999999998875 7789999


Q ss_pred             EcCCCceee---ecccCCCeeEEEEEeCCCCCeEEEEEC-CCeEEEEeCCCCCceEEEe-----C--CC--eeEEEecCC
Q psy12911        104 DLASNQSMQ---VAQHDAPVKTCHWIKAPNYTCLMTGSW-DKTLKFWDLRTPQPIMTIN-----L--PE--RCYCADVDY  170 (356)
Q Consensus       104 d~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~-----~--~~--~~~~~~~~~  170 (356)
                      +........   ...+...+.++.++  ++++++++++. +..|.+|+...........     .  ..  ..+.+...+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~s--~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~  188 (333)
T d1ri6a_         111 RLEDGLPVGVVDVVEGLDGCHSANIS--PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  188 (333)
T ss_dssp             EEETTEEEEEEEEECCCTTBCCCEEC--TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             ccccccceecccccCCCccceEEEee--ecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc
Confidence            987765443   45567788899999  99998887774 4579999987765433221     1  11  245555666


Q ss_pred             CeEEEE-ecCCeEEEEeCCCCcccccc------cc--CcccccceEEEeecCCCCCCC-eEEEeecCCeEEEEEeCCCCC
Q psy12911        171 PLAVVG-TAGRGIVLYQLEGKPQEFKK------TE--SPLKYQNRCIAIFRDKKKQPA-GYGLGSVEGRVAIQYVNPANP  240 (356)
Q Consensus       171 ~~~~~~-~~d~~i~i~d~~~~~~~~~~------~~--~~~~~~i~~~~~~~~~~~~~~-~~~~~~~dg~i~i~~~~~~~~  240 (356)
                      ..++.. ...+...+++..........      ..  .........++++++    +. .++.+..++.+.+|+++....
T Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d----~~~~~~~~~~~~~~~~~~~~~~~~  264 (333)
T d1ri6a_         189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD----GRHLYACDRTASLITVFSVSEDGS  264 (333)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT----SSEEEEEETTTTEEEEEEECTTSC
T ss_pred             eeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecc----cCceeeecccCCeEEEEEEcCCCC
Confidence            655544 45677888887654322111      01  112234566788888    44 455556778999999976532


Q ss_pred             CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc-CCCeEEEEEc--Cccee
Q psy12911        241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWDK--DARTK  295 (356)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd~--~~~~~  295 (356)
                        ......+....        ..+..++|+|||++|++++ .++.|++|++  .+|++
T Consensus       265 --~~~~~~~~~~~--------~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         265 --VLSKEGFQPTE--------TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             --CEEEEEEEECS--------SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             --EEEEEEEeCCC--------CCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence              33333222100        1467899999999877665 5689999954  55543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=2.3e-18  Score=143.06  Aligned_cols=268  Identities=10%  Similarity=-0.003  Sum_probs=166.4

Q ss_pred             CCceEEeCCCCCCeeEEEecCCCCCceEEEEE----------eCCCeEEEEeccCCCceeeeeeccC-------CcceeE
Q psy12911         19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAG----------SWDNNVRCWEVEPNGKTIPKSMQGM-------SEPVLD   81 (356)
Q Consensus        19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~----------~~dg~i~vw~~~~~~~~~~~~~~~~-------~~~v~~   81 (356)
                      .+.+..+..+  .+..++|+|||   ++|++.          +.|+.|++||..+..  ....+..+       ......
T Consensus        38 g~~~~~~~~g--~~~~~a~SpDg---~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~~~  110 (355)
T d2bbkh_          38 GRVIGMIDGG--FLPNPVVADDG---SFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWM  110 (355)
T ss_dssp             TEEEEEEEEC--SSCEEEECTTS---SCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGG
T ss_pred             CcEEEEEECC--CCCceEEcCCC---CEEEEEeCCCccccccCCCCEEEEEECCCCC--EEEEEecCCcceeecCCCCce
Confidence            3444444433  33478999999   877764          347899999998843  22333222       223456


Q ss_pred             EEEccCCCeEEEEc--CCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC
Q psy12911         82 VAWIDDGTKVFMAG--CDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL  159 (356)
Q Consensus        82 ~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  159 (356)
                      ++|++++++++.+.  .+..+.+|+..+++.+...........  +.  ......+..+.|+...++.......+..+..
T Consensus       111 ~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~  186 (355)
T d2bbkh_         111 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI--FP--TAPDTFFMHCRDGSLAKVAFGTEGTPEITHT  186 (355)
T ss_dssp             EEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE--EE--EETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred             EEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE--ee--cCCcceEEEcCCCCEEEEEecCCCeEEEEec
Confidence            89999999887764  467899999999987763322221111  11  1122233334444444444333322222211


Q ss_pred             C---------CeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCc----------ccccceEEEeecCCCCCCCe
Q psy12911        160 P---------ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESP----------LKYQNRCIAIFRDKKKQPAG  220 (356)
Q Consensus       160 ~---------~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~  220 (356)
                      .         .........+..++.++.++.+++|++..+..........          .......++++++    +..
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d----~~~  262 (355)
T d2bbkh_         187 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA----LDR  262 (355)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT----TTE
T ss_pred             ccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCC----CCe
Confidence            1         1123445556678888999999999998865322211110          1123456788888    566


Q ss_pred             EEEeecC----------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC--EEEEEcCCCeEEEE
Q psy12911        221 YGLGSVE----------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG--TLATVGSEGTFSFW  288 (356)
Q Consensus       221 ~~~~~~d----------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~--~l~s~~~dg~i~iw  288 (356)
                      ++....+          ..+.+||....  +.+..+....            .+.+++|+|||+  ++++++.|+.|++|
T Consensus       263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~--~~~~~~~~~~------------~~~~~a~spDG~~~l~v~~~~d~~i~v~  328 (355)
T d2bbkh_         263 IYLLVDQRDEWRHKTASRFVVVLDAKTG--ERLAKFEMGH------------EIDSINVSQDEKPLLYALSTGDKTLYIH  328 (355)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTC--CEEEEEEEEE------------EECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             EEEEeccCCceeecCCCCeEEEEeCCCC--cEEEEecCCC------------CEEEEEEcCCCCeEEEEEECCCCEEEEE
Confidence            6655443          35888888765  5566665544            588999999997  46678889999999


Q ss_pred             EcCcceecCCCCCCccceEEEEECCCC
Q psy12911        289 DKDARTKLKPSEAMDMSISTCALNHNG  315 (356)
Q Consensus       289 d~~~~~~~~~~~~~~~~v~~~~~s~~~  315 (356)
                      |+++++.+.++..+......+.+.++|
T Consensus       329 D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         329 DAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             ETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             ECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            999999999988776665666665543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=8.2e-17  Score=134.40  Aligned_cols=256  Identities=8%  Similarity=-0.034  Sum_probs=156.2

Q ss_pred             CCCCeeEEEecCCCCCceE--EE-EEeCCCe--EEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-------
Q psy12911         28 PEDSISCMAFSPSTLPQYF--LI-AGSWDNN--VRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-------   95 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~--l~-~~~~dg~--i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------   95 (356)
                      +.+....++..+++   +.  ++ ....++.  |.+||..+  ......+..+..+  .++|+|||+.|++.+       
T Consensus        18 ~~g~~~~~a~~~~~---~~~~v~~~~~~~g~~~~~~~d~~~--~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~   90 (368)
T d1mdah_          18 SDGSSCDHGPGAIS---RRSHITLPAYFAGTTENWVSCAGC--GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSA   90 (368)
T ss_dssp             CCCCCBCCCCCCCT---TEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTT
T ss_pred             cCCCccccccCCCC---cceeEEeeccCCCcceEEEEeCCC--CcEEEEEeCCCCC--cceECCCCCEEEEEcccCcccc
Confidence            45555566677777   43  22 2344555  55557665  4444555555444  689999999988754       


Q ss_pred             ---CCCeEEEEEcCCCceeee-ccc-------CCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCCCceEEEeCCCee
Q psy12911         96 ---CDKTVKCWDLASNQSMQV-AQH-------DAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTPQPIMTINLPERC  163 (356)
Q Consensus        96 ---~dg~i~vwd~~~~~~~~~-~~~-------~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~  163 (356)
                         .|+.|.+||..+++.+.. ..+       ......++|+  +||++|+++. .++.+.+||+.+++.+..+..+...
T Consensus        91 ~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S--pDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~  168 (368)
T d1mdah_          91 KGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC--ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF  168 (368)
T ss_dssp             SSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC--TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC
T ss_pred             ccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEEC--CCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc
Confidence               367899999999987652 211       2234568999  9999998876 5689999999999988887765432


Q ss_pred             EEEecCCCeEEEEecCCeEEEEeCCC----------------------------------------------Cccccccc
Q psy12911        164 YCADVDYPLAVVGTAGRGIVLYQLEG----------------------------------------------KPQEFKKT  197 (356)
Q Consensus       164 ~~~~~~~~~~~~~~~d~~i~i~d~~~----------------------------------------------~~~~~~~~  197 (356)
                      .........++..+.||.+..+++..                                              ........
T Consensus       169 ~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~  248 (368)
T d1mdah_         169 HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAA  248 (368)
T ss_dssp             CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECC
T ss_pred             eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEee
Confidence            22222222333344444444444332                                              21111000


Q ss_pred             cC----------cccccceEEEeecCCCCCCCeEEEeecC---------CeEEEEEeCCCCCCCcceeeeecCCCCCCCc
Q psy12911        198 ES----------PLKYQNRCIAIFRDKKKQPAGYGLGSVE---------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGV  258 (356)
Q Consensus       198 ~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~d---------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (356)
                      ..          ........++++++    +..+++...+         ..+.+||....  +.+..+....        
T Consensus       249 ~~~~~~~~~~~~~~~~g~~~~a~~~~----~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~--~~~~~~~~~~--------  314 (368)
T d1mdah_         249 IDGNESGRKADNFRSAGFQMVAKLKN----TDGIMILTVEHSRSCLAAAENTSSVTASVG--QTSGPISNGH--------  314 (368)
T ss_dssp             CCSSCTHHHHTTEEECSSSCEEEETT----TTEEEEEEEECSSCTTSCEEEEEEEESSSC--CEEECCEEEE--------
T ss_pred             cccccceeeeeeecCCCceeEEEcCC----CCEEEEEecCCCceeecCCceEEEEECCCC--cEeEEecCCC--------
Confidence            00          00112234566666    4444443222         23667776655  5555555443        


Q ss_pred             ccccceEEEEEeCCCC--EEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEE
Q psy12911        259 QDIYAVNGIVFHPVHG--TLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCAL  311 (356)
Q Consensus       259 ~~~~~i~~i~~sp~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  311 (356)
                          .+..++|+|||+  +++++..|+.|++||..+++.+.+++.... -+.|++
T Consensus       315 ----~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         315 ----DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             ----EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred             ----ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence                588999999996  356778899999999999999988875433 344444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.73  E-value=4.9e-16  Score=133.99  Aligned_cols=138  Identities=9%  Similarity=0.059  Sum_probs=106.1

Q ss_pred             eEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceee---eeeccCCcceeEEEEccCCCeEEEEcC---------CCeE
Q psy12911         33 SCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIP---KSMQGMSEPVLDVAWIDDGTKVFMAGC---------DKTV  100 (356)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i  100 (356)
                      ..+.|.+++   +++..  .|+.+.+||+.++.....   ..+..|...|.++.|||||++|+.++.         ++.+
T Consensus        20 ~~~~W~~d~---~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~   94 (470)
T d2bgra1          20 YSLRWISDH---EYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (470)
T ss_dssp             CCCEECSSS---EEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             cCCEeCCCC---EEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceE
Confidence            357899998   77764  478899999998543321   234556788999999999999998753         5788


Q ss_pred             EEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC--------------------
Q psy12911        101 KCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP--------------------  160 (356)
Q Consensus       101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------------  160 (356)
                      .+||+.+++...+..+...+..+.|+  |||+.|+... ++.+++|+..+++..+.....                    
T Consensus        95 ~l~d~~~~~~~~l~~~~~~~~~~~~S--PDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~  171 (470)
T d2bgra1          95 DIYDLNKRQLITEERIPNNTQWVTWS--PVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (470)
T ss_dssp             EEEETTTTEECCSSCCCTTEEEEEEC--SSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EEEECCCCcccccccCCccccccccc--cCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecC
Confidence            99999999988888999999999999  9999999865 678999999888765543221                    


Q ss_pred             -CeeEEEecCCCeEEEEec
Q psy12911        161 -ERCYCADVDYPLAVVGTA  178 (356)
Q Consensus       161 -~~~~~~~~~~~~~~~~~~  178 (356)
                       ...+.+++++..++....
T Consensus       172 ~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         172 AYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             SSBCEEECTTSSEEEEEEE
T ss_pred             CccccEECCCCCccceeEe
Confidence             123557777777766543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.69  E-value=2.5e-14  Score=119.21  Aligned_cols=253  Identities=12%  Similarity=0.054  Sum_probs=160.4

Q ss_pred             eccCCcceeEEEEccCCCeEEEEc-----CCCeEEEEEcCCCceeee-cccCCCeeEEEEEeCCCCCeEEEEE-------
Q psy12911         72 MQGMSEPVLDVAWIDDGTKVFMAG-----CDKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGS-------  138 (356)
Q Consensus        72 ~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~-------  138 (356)
                      ...+..++..++++|||+.++...     ..+.|.+||..+++.+.. ..+.  ...++|+  |||++|++++       
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~--~~~~a~S--pDG~~l~va~~~~~~~~   91 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF--LPNPVAA--HSGSEFALASTSFSRIA   91 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC--CccEEEc--CCCCEEEEEeecCCccc
Confidence            345788999999999999987652     346799999999998863 3333  3378999  9999998875       


Q ss_pred             ---CCCeEEEEeCCCCCceEEEeCCCe----------eEEEecCCCeEEEE--ecCCeEEEEeCCCCccccccccCcccc
Q psy12911        139 ---WDKTLKFWDLRTPQPIMTINLPER----------CYCADVDYPLAVVG--TAGRGIVLYQLEGKPQEFKKTESPLKY  203 (356)
Q Consensus       139 ---~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~  203 (356)
                         .++.|.+||..+++.+..+..+..          .+.++.++..+++.  ..++.+.+|+.......      .+..
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~------~~~~  165 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD------QLLS  165 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE------EEec
Confidence               357899999999999888776542          23455555544433  33456777776654321      1223


Q ss_pred             cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee-------------eecCCC---------C------C
Q psy12911        204 QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK-------------CHRSNG---------G------A  255 (356)
Q Consensus       204 ~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~-------------~~~~~~---------~------~  255 (356)
                      ...++.++|++   ...+++.+.|+.+.+|+.............             ......         .      .
T Consensus       166 ~~~~~~~s~~g---~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  242 (373)
T d2madh_         166 SPTCYHIHPGA---PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS  242 (373)
T ss_pred             cceeEEEecCC---CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcC
Confidence            45678888884   345677888888888886543211000000             000000         0      0


Q ss_pred             CC------------------cccccceEEEEEeCCCCEEE----------EEcCCCeEEEEEcCcceecCCCCCCccceE
Q psy12911        256 GG------------------VQDIYAVNGIVFHPVHGTLA----------TVGSEGTFSFWDKDARTKLKPSEAMDMSIS  307 (356)
Q Consensus       256 ~~------------------~~~~~~i~~i~~sp~~~~l~----------s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  307 (356)
                      ..                  .........++++|++..++          +...++.+.+||..+++.+..+. +...+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~  321 (373)
T d2madh_         243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVD  321 (373)
T ss_pred             CCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCee
Confidence            00                  00001123456666665443          45567789999999999888775 566789


Q ss_pred             EEEECCCCCEE--EEEeccCCcCCCccCCCCCCcee
Q psy12911        308 TCALNHNGQIF--AYAVSYDWSKGHEHNNPNKGNAI  341 (356)
Q Consensus       308 ~~~~s~~~~~l--~~~s~~d~~~~~~~~~~~~~~~~  341 (356)
                      +++|+|||+.+  ++++.+   ....+||...++.+
T Consensus       322 ~~a~spDG~~~l~vt~~~d---~~v~v~D~~tg~~~  354 (373)
T d2madh_         322 AISVAQDGGPDLYALSAGT---EVLHIYDAGAGDQD  354 (373)
T ss_pred             EEEECCCCCEEEEEEeCCC---CeEEEEECCCCCEE
Confidence            99999999864  344432   34566777665544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.61  E-value=4.6e-13  Score=111.17  Aligned_cols=259  Identities=10%  Similarity=0.007  Sum_probs=168.6

Q ss_pred             EEEEEeCCCeEEEEeccCCCceeeeeec------------------------------cCCcceeEEEEccCCCeEEEEc
Q psy12911         46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQ------------------------------GMSEPVLDVAWIDDGTKVFMAG   95 (356)
Q Consensus        46 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~------------------------------~~~~~v~~~~~s~~~~~l~~~~   95 (356)
                      .+++|+.+|+|+||++.+.  +.++++.                              .|.-......++|||++|++..
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~--r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d   90 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSM--RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIND   90 (441)
T ss_dssp             EEEECBTTCCEEEEEETTT--EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEE
T ss_pred             EEEeCCCCCcEEEEeCCCC--cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEc
Confidence            3677888999999999763  2222221                              1223344455678999987664


Q ss_pred             -CCCeEEEEEcCCCceeee--cccCCCeeEEEEEeCCCCC--eEEEEECCC-----------------eEEEEeCCCCCc
Q psy12911         96 -CDKTVKCWDLASNQSMQV--AQHDAPVKTCHWIKAPNYT--CLMTGSWDK-----------------TLKFWDLRTPQP  153 (356)
Q Consensus        96 -~dg~i~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~--~l~~~~~dg-----------------~i~iwd~~~~~~  153 (356)
                       .+++|.++|+.+++....  ..+...+..++|+  ++++  +++..+++.                 .+..+|..+.+.
T Consensus        91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~s--pdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2          91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQ--KVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEEC--CSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred             CCCCEEEEEECCCCcEeeEEecCCCCCccceEEe--ccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence             588999999999987763  3467789999999  7777  455444432                 235688888887


Q ss_pred             eEEEeCCC--eeEEEecCCCeEEEEecC-----------------------------------------CeEEEEeCCCC
Q psy12911        154 IMTINLPE--RCYCADVDYPLAVVGTAG-----------------------------------------RGIVLYQLEGK  190 (356)
Q Consensus       154 ~~~~~~~~--~~~~~~~~~~~~~~~~~d-----------------------------------------~~i~i~d~~~~  190 (356)
                      ...+....  ..+.+++++.++++.+.+                                         +.+.+++....
T Consensus       169 ~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~  248 (441)
T d1qnia2         169 AWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES  248 (441)
T ss_dssp             EEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC
T ss_pred             eEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC
Confidence            77776544  355666777766665543                                         22222222221


Q ss_pred             ccccccccCcccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCC------CCCcceeeeecCCCCCCCcccccc
Q psy12911        191 PQEFKKTESPLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPAN------PKDNFTFKCHRSNGGAGGVQDIYA  263 (356)
Q Consensus       191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      . ....+  +.......+.++|+    +.++ +++..++++.+||++...      ......+.++.....        .
T Consensus       249 ~-v~~~I--PvgksPhGv~vSPD----Gkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl--------g  313 (441)
T d1qnia2         249 E-FTRYI--PVPKNPHGLNTSPD----GKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL--------G  313 (441)
T ss_dssp             S-SEEEE--CCBSSCCCEEECTT----SCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS--------C
T ss_pred             c-eEEEE--eCCCCccCceECCC----CCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccccc--------C
Confidence            1 11111  22344678999999    6655 567789999999985321      122233333332111        3


Q ss_pred             eEEEEEeCCCCEEEEEcCCCeEEEEEcCcc------e----e-----cCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        264 VNGIVFHPVHGTLATVGSEGTFSFWDKDAR------T----K-----LKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       264 i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~------~----~-----~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      ....+|.++|..+.+...|..|..|++...      +    .     ++-..+|...+.+.+++|||+||++++.
T Consensus       314 plh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         314 PLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             cccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence            456789999999999999999999997521      1    1     1222578888888999999999999965

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.56  E-value=5.9e-14  Score=120.78  Aligned_cols=106  Identities=14%  Similarity=0.156  Sum_probs=83.2

Q ss_pred             CCCCCCeeEEEecCCCCCceEEEEEeC---------CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911         26 SPPEDSISCMAFSPSTLPQYFLIAGSW---------DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC   96 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~~~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   96 (356)
                      ..|...|.++.|||||   ++|+.++.         ++.+.|||+.++  . ...+..|...+..+.|||||+.||... 
T Consensus        58 ~~~~~~i~~~~~SpDg---~~i~~~~~~~~~~r~s~~~~~~l~d~~~~--~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-  130 (470)
T d2bgra1          58 DEFGHSINDYSISPDG---QFILLEYNYVKQWRHSYTASYDIYDLNKR--Q-LITEERIPNNTQWVTWSPVGHKLAYVW-  130 (470)
T ss_dssp             TTSSSCCCEEEECTTS---SEEEEEEEEEECSSSCEEEEEEEEETTTT--E-ECCSSCCCTTEEEEEECSSTTCEEEEE-
T ss_pred             hhccCccceeEECCCC---CEEEEEECCcceeeeccCceEEEEECCCC--c-ccccccCCccccccccccCcceeeEee-
Confidence            4456789999999999   88888753         568899999882  3 256778899999999999999999864 


Q ss_pred             CCeEEEEEcCCCceeeecc-------------------cCCCeeEEEEEeCCCCCeEEEEECC
Q psy12911         97 DKTVKCWDLASNQSMQVAQ-------------------HDAPVKTCHWIKAPNYTCLMTGSWD  140 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~~l~~~~~d  140 (356)
                      ++.+.+|+..+++..+...                   ..+....+.|+  |||+.|+....|
T Consensus       131 ~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wS--PDGk~ia~~~~d  191 (470)
T d2bgra1         131 NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS--PNGTFLAYAQFN  191 (470)
T ss_dssp             TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC--TTSSEEEEEEEE
T ss_pred             cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEEC--CCCCccceeEec
Confidence            6899999999887654221                   22345668899  999999987644

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.49  E-value=1e-10  Score=94.01  Aligned_cols=237  Identities=8%  Similarity=0.048  Sum_probs=155.2

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc-
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ-  109 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-  109 (356)
                      .+..++++|||   +++++...+++|..|+...  ..  ..+......+.+++|+++|+++++...++.+.+|+..... 
T Consensus        29 ~~e~iAv~pdG---~l~vt~~~~~~I~~i~p~g--~~--~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          29 FLENLASAPDG---TIFVTNHEVGEIVSITPDG--NQ--QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             CEEEEEECTTS---CEEEEETTTTEEEEECTTC--CE--EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CcCCEEECCCC---CEEEEeCCCCEEEEEeCCC--CE--EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc
Confidence            68899999999   9999998899988887554  22  2344466789999999999988888888888888765433 


Q ss_pred             -eee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEe
Q psy12911        110 -SMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQ  186 (356)
Q Consensus       110 -~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  186 (356)
                       ...  ..........+.+.  ++++++++.+.++.+..+|...+.......                            
T Consensus       102 ~~~~~~~~~~~~~~n~i~~~--~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~----------------------------  151 (302)
T d2p4oa1         102 TVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLE----------------------------  151 (302)
T ss_dssp             CEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEE----------------------------
T ss_pred             ceeeccccCCccccceeEEc--cCCCEEeeccccccceeeeccCCcceeEec----------------------------
Confidence             222  22345567888888  899888888888888888876543221111                            


Q ss_pred             CCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE
Q psy12911        187 LEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG  266 (356)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (356)
                       .....  .............+.+..+     ..+++.+..+.|..++.+...............           ....
T Consensus       152 -~~~~~--~~~~~~~~~~~ngi~~~~~-----~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----------~pdg  212 (302)
T d2p4oa1         152 -HPMLA--RSNSESVFPAANGLKRFGN-----FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT-----------NIDD  212 (302)
T ss_dssp             -CGGGS--CSSTTCCSCSEEEEEEETT-----EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESC-----------CCSS
T ss_pred             -CCccc--eeeccCcccccccccccCC-----ceeeecCCCCeEEeccccccccccccccccCCC-----------CCcc
Confidence             10000  0000011123344554433     466677778888888876542211111111111           4567


Q ss_pred             EEEeCCCCEEEEEcCCCeEEEEEcCcce-ecCCCCCCccceEEEEE---CCCCCEEEEEec
Q psy12911        267 IVFHPVHGTLATVGSEGTFSFWDKDART-KLKPSEAMDMSISTCAL---NHNGQIFAYAVS  323 (356)
Q Consensus       267 i~~sp~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~---s~~~~~l~~~s~  323 (356)
                      +++.++|+++++...++.|..++..... .+......-...++++|   ++|++.|..++.
T Consensus       213 ia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         213 FAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             eEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            9999999988888889999999876432 23333333456789999   778898877764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=3.7e-10  Score=88.97  Aligned_cols=234  Identities=16%  Similarity=0.057  Sum_probs=143.1

Q ss_pred             eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC---CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCC
Q psy12911         55 NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD---KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNY  131 (356)
Q Consensus        55 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  131 (356)
                      .|.|.|.+.  ... +.+..+...+...+|||||+.||.....   ..+.+.+..++.......+........|+  |++
T Consensus        20 ~l~i~d~dG--~~~-~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--pdg   94 (269)
T d2hqsa1          20 ELRVSDYDG--YNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFS--PDG   94 (269)
T ss_dssp             EEEEEETTS--CSC-EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEEC--TTS
T ss_pred             EEEEEcCCC--CCc-EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceec--CCC
Confidence            566767654  222 3344456778899999999999876543   35778888888877777888899999999  999


Q ss_pred             CeEEEEECC-Ce--EEEEeCCCCCceEEEeCCCe--eEEEecCCC-eEEEEecCC--eEEEEeCCCCccccccccCcccc
Q psy12911        132 TCLMTGSWD-KT--LKFWDLRTPQPIMTINLPER--CYCADVDYP-LAVVGTAGR--GIVLYQLEGKPQEFKKTESPLKY  203 (356)
Q Consensus       132 ~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~  203 (356)
                      ..++..... +.  +..+................  .......+. .+++...++  .|...++.........   ....
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~---~~~~  171 (269)
T d2hqsa1          95 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT---WEGS  171 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC---CSSS
T ss_pred             CeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeee---cccc
Confidence            988876543 22  33333333333222222222  223333444 334444444  4555566554322111   2334


Q ss_pred             cceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC-
Q psy12911        204 QNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS-  281 (356)
Q Consensus       204 ~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-  281 (356)
                      ......++|+    +..++..+ ..+...+|..+..... . .+.....           ......|||||+.|+-.+. 
T Consensus       172 ~~~~~~~spd----g~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~~-----------~~~~p~~SPDG~~i~f~s~~  234 (269)
T d2hqsa1         172 QNQDADVSSD----GKFMVMVSSNGGQQHIAKQDLATGG-V-QVLSSTF-----------LDETPSLAPNGTMVIYSSSQ  234 (269)
T ss_dssp             EEEEEEECTT----SSEEEEEEECSSCEEEEEEETTTCC-E-EECCCSS-----------SCEEEEECTTSSEEEEEEEE
T ss_pred             cccccccccc----cceeEEEeecCCceeeeEeeccccc-c-eEeecCc-----------cccceEECCCCCEEEEEEcC
Confidence            5567789999    56665554 4556666666544322 2 2222222           5677899999998875543 


Q ss_pred             --CCeEEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911        282 --EGTFSFWDKDARTKLKPSEAMDMSISTCALNHN  314 (356)
Q Consensus       282 --dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  314 (356)
                        ...|+++++..+.. ..+....+.+...+|||-
T Consensus       235 ~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         235 GMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             TTEEEEEEEETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred             CCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence              34789999986654 445555678888999983

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.40  E-value=1.3e-11  Score=102.34  Aligned_cols=264  Identities=8%  Similarity=-0.104  Sum_probs=149.7

Q ss_pred             CCcceeEEEEccCCCeE--EE-EcCCC--eEEEEEcCCCceeee-cccCCCeeEEEEEeCCCCCeEEEEE----------
Q psy12911         75 MSEPVLDVAWIDDGTKV--FM-AGCDK--TVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGS----------  138 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~~l--~~-~~~dg--~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~----------  138 (356)
                      +.++...++..++++..  +. ...++  .|.+||..+++.+.. ..+..  ..++|+  |||+.|++.+          
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~--~~~a~s--pDg~~i~~~~~~~~~~~~g~   93 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL--SLAVAG--HSGSDFALASTSFARSAKGK   93 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT--CEEEEC--TTSSCEEEEEEEETTTTSSS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC--CcceEC--CCCCEEEEEcccCccccccc
Confidence            45566666777888753  22 23344  577779999988763 33333  358898  9999988765          


Q ss_pred             CCCeEEEEeCCCCCceEEEeCCC----------eeEEEecCCCeEEEEe-cCCeEEEEeCCCCccccccccCc-----cc
Q psy12911        139 WDKTLKFWDLRTPQPIMTINLPE----------RCYCADVDYPLAVVGT-AGRGIVLYQLEGKPQEFKKTESP-----LK  202 (356)
Q Consensus       139 ~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~-----~~  202 (356)
                      .|+.|++||..+++.+..+..+.          ..+.+++++.+++++. .++.+.+||+.+++.........     ..
T Consensus        94 ~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  173 (368)
T d1mdah_          94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPG  173 (368)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEE
T ss_pred             cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccC
Confidence            36789999999999998886432          2477899999888775 57999999998875322211100     01


Q ss_pred             ccceEEEeecCCCC--------------------------------CCCeEEEeecCCeEEEEEeCCCCCCCcceeeeec
Q psy12911        203 YQNRCIAIFRDKKK--------------------------------QPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHR  250 (356)
Q Consensus       203 ~~i~~~~~~~~~~~--------------------------------~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  250 (356)
                      .....+++++++..                                .....+.....+.++++++.............+.
T Consensus       174 ~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  253 (368)
T d1mdah_         174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNE  253 (368)
T ss_dssp             ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSC
T ss_pred             CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeeccccc
Confidence            11122222222100                                0001111222233333333322111100000000


Q ss_pred             CCCCCCCcccccceEEEEEeCCCCEEEEEcCC---------CeEEEEEcCcceecCCCCCCccceEEEEECCCCCEE-EE
Q psy12911        251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE---------GTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIF-AY  320 (356)
Q Consensus       251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~  320 (356)
                      ....... ........++++|++..++....+         ..|.+||..+++.+..+. +...+.+++|+|||+.+ +.
T Consensus       254 ~~~~~~~-~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~  331 (368)
T d1mdah_         254 SGRKADN-FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             THHHHTT-EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEE
T ss_pred             ceeeeee-ecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEE
Confidence            0000000 000123457889998776654322         369999999999888886 45678999999999853 33


Q ss_pred             EeccCCcCCCccCCCCCCceeeeccc
Q psy12911        321 AVSYDWSKGHEHNNPNKGNAIFLRPC  346 (356)
Q Consensus       321 ~s~~d~~~~~~~~~~~~~~~~~~~~~  346 (356)
                      ++..  +....+||...++.+..-++
T Consensus       332 s~~~--~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         332 NSAG--TEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EETT--TTEEEEEESSSCEEEEECCC
T ss_pred             EeCC--CCeEEEEECCCCCEEEEEEC
Confidence            3332  34566778776665544333

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.39  E-value=1.5e-11  Score=102.02  Aligned_cols=234  Identities=9%  Similarity=-0.032  Sum_probs=153.8

Q ss_pred             CCCCCCeeEEEecCCCCCceEEEEE-eCCCeEEEEeccCCCceeeeee-ccCCcceeEEEEccCCC--eEEEEcCCC---
Q psy12911         26 SPPEDSISCMAFSPSTLPQYFLIAG-SWDNNVRCWEVEPNGKTIPKSM-QGMSEPVLDVAWIDDGT--KVFMAGCDK---   98 (356)
Q Consensus        26 ~~h~~~V~~~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~--~l~~~~~dg---   98 (356)
                      ..|........++|||   ++|++. ..+..|.++|+.+....  ..+ ..+...+..++|+|+|+  +++..+.+.   
T Consensus        68 d~hhP~~s~t~gtpDG---r~lfV~d~~~~rVavIDl~t~k~~--~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~  142 (441)
T d1qnia2          68 DCHHPHISMTDGRYDG---KYLFINDKANTRVARIRLDIMKTD--KITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ  142 (441)
T ss_dssp             CBCCCEEEEETTEEEE---EEEEEEETTTTEEEEEETTTTEEE--EEEECTTCCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred             cccCCCcceecccCCC---CEEEEEcCCCCEEEEEECCCCcEe--eEEecCCCCCccceEEeccCCEEEEEeccCCcccc
Confidence            3466677778889999   888665 46789999999984322  322 23677899999999998  444444322   


Q ss_pred             --------------eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC------------------------
Q psy12911         99 --------------TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD------------------------  140 (356)
Q Consensus        99 --------------~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------------------------  140 (356)
                                    .+..+|..+.+.............+.++  |+|+++++++.+                        
T Consensus       143 ~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~s--pdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p  220 (441)
T d1qnia2         143 PNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDAD--YTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE  220 (441)
T ss_dssp             SCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEEC--SSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHH
T ss_pred             cCcccccccccccceEEeecCccceeeEEEecCCCccceEEC--CCCCEEEEEecCCCceEEEeccCcceEEEEEeCCcc
Confidence                          2355788777766544445567889999  999988877643                        


Q ss_pred             -----------------CeEEEEeCCCCCceEEEeCCC--eeEEEecCCCeEEE-EecCCeEEEEeCCCCccccccc---
Q psy12911        141 -----------------KTLKFWDLRTPQPIMTINLPE--RCYCADVDYPLAVV-GTAGRGIVLYQLEGKPQEFKKT---  197 (356)
Q Consensus       141 -----------------g~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~---  197 (356)
                                       +.+.+++....+.+..+..+.  ..+.+++++.++++ +..++++.+||+++....+...   
T Consensus       221 ~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~  300 (441)
T d1qnia2         221 RIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIEL  300 (441)
T ss_dssp             HHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCG
T ss_pred             ceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCc
Confidence                             334455555556666666544  35778888887654 6778999999987632211100   


Q ss_pred             ------cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC-------CCCC-Cccee-----eeecCCCCCCCc
Q psy12911        198 ------ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP-------ANPK-DNFTF-----KCHRSNGGAGGV  258 (356)
Q Consensus       198 ------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~-------~~~~-~~~~~-----~~~~~~~~~~~~  258 (356)
                            .....-.....+|.++    +..+.+...|..|..|+++.       .... .+..+     .+|..       
T Consensus       301 ~~~~~~~~~~glgplh~~fd~~----g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~-------  369 (441)
T d1qnia2         301 RDTIVAEPELGLGPLHTTFDGR----GNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNH-------  369 (441)
T ss_dssp             GGGEEECCBCCSCEEEEEECSS----SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEE-------
T ss_pred             ceEEEeecccccCcccceecCC----ceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCc-------
Confidence                  0011112234467777    77788888999999999741       1111 12222     45544       


Q ss_pred             ccccceEEEEEeCCCCEEEEEcC
Q psy12911        259 QDIYAVNGIVFHPVHGTLATVGS  281 (356)
Q Consensus       259 ~~~~~i~~i~~sp~~~~l~s~~~  281 (356)
                          .+.+.+++|||+||++++.
T Consensus       370 ----~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         370 ----ASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             ----ETTTTSTTCCCCEEEEEES
T ss_pred             ----cccccccCCCCcEEEecCc
Confidence                6777889999999999943

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=3e-09  Score=83.17  Aligned_cols=225  Identities=10%  Similarity=-0.025  Sum_probs=137.1

Q ss_pred             eeEEEecCCCCCceEEEEE-eCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce
Q psy12911         32 ISCMAFSPSTLPQYFLIAG-SWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS  110 (356)
Q Consensus        32 V~~~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  110 (356)
                      =..+++.++|   ++.++. +..+.+..++........ ....+ ......++++++++.+++....+.+++++..+...
T Consensus        16 P~~vavd~dG---~i~v~~~~~~~~i~~~~~~~~~~~~-~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          16 PSGVAVDSAG---NVYVTSEGMYGRVVKLATGSTGTTV-LPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             EEEEEECTTC---CEEEEECSSSCEEEEEC----CEEE-CCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CCEEEEcCCC---CEEEEEcCCCCEEEEEcCCCceEEE-eccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeecccee
Confidence            4799999998   755554 556778877766532221 22222 23467889999998877777677777666555554


Q ss_pred             eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCC
Q psy12911        111 MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGK  190 (356)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  190 (356)
                      +..........++++.  ++++++++-..+..+..++...... ..+..                               
T Consensus        91 ~~~~~~~~~p~~iavd--~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~~-------------------------------  136 (260)
T d1rwia_          91 VLPFDGLNYPEGLAVD--TQGAVYVADRGNNRVVKLAAGSKTQ-TVLPF-------------------------------  136 (260)
T ss_dssp             ECCCCSCCSEEEEEEC--TTCCEEEEEGGGTEEEEECTTCSSC-EECCC-------------------------------
T ss_pred             eeeeeeeeeccccccc--ccceeEeecccccccccccccccee-eeeee-------------------------------
Confidence            4433344567888888  8877766655555566655433211 11100                               


Q ss_pred             ccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee-eecCCCCCCCcccccceEEEEE
Q psy12911        191 PQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK-CHRSNGGAGGVQDIYAVNGIVF  269 (356)
Q Consensus       191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~  269 (356)
                               ........+++.++    +..+++...++.|..++.+...   ...+. ..-.           ....+++
T Consensus       137 ---------~~~~~p~~i~~~~~----g~~~v~~~~~~~i~~~d~~~~~---~~~~~~~~~~-----------~p~gi~~  189 (260)
T d1rwia_         137 ---------TGLNDPDGVAVDNS----GNVYVTDTDNNRVVKLEAESNN---QVVLPFTDIT-----------APWGIAV  189 (260)
T ss_dssp             ---------CSCCSCCEEEECTT----CCEEEEEGGGTEEEEECTTTCC---EEECCCSSCC-----------SEEEEEE
T ss_pred             ---------cccCCcceeeecCC----CCEeeeccccccccccccccce---eeeeeccccC-----------CCcccee
Confidence                     00123356777777    6677777777778777765431   11111 1111           4678999


Q ss_pred             eCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911        270 HPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       270 sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                      .++|+++++....+.|..++.............-....+|+++++|.++++-.
T Consensus       190 d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         190 DEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             CTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEG
T ss_pred             eeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEEC
Confidence            99999999998899999888764432221122234568999999998776643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.27  E-value=7.8e-09  Score=84.98  Aligned_cols=252  Identities=10%  Similarity=0.055  Sum_probs=143.3

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeE--EEEcC-CCeEEEE
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV--FMAGC-DKTVKCW  103 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l--~~~~~-dg~i~vw  103 (356)
                      .....+.-|+|+|++   ++|+++.. +.+..|.+...+................++++++++.+  +++.. .++|..+
T Consensus        37 ~~~~~~s~la~s~d~---~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~  112 (365)
T d1jofa_          37 PQDEPISWMTFDHER---KNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYAN  112 (365)
T ss_dssp             CTTCCCSEEEECTTS---SEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred             cCCCCCCEEEEcCCC---CEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEe
Confidence            345567789999999   88888764 57888888764433222222223445678888888843  33322 4566555


Q ss_pred             EcCCC-c------------e---ee--ecccCCCeeEEEEEeCCCCCeEEEEEC-CCeEEEEeCCCCCceEEEeCCCeeE
Q psy12911        104 DLASN-Q------------S---MQ--VAQHDAPVKTCHWIKAPNYTCLMTGSW-DKTLKFWDLRTPQPIMTINLPERCY  164 (356)
Q Consensus       104 d~~~~-~------------~---~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~  164 (356)
                      .+... .            .   ..  .......+.++.|+  |+|+++++++. ...|.+|+......+.....     
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~s--PdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~-----  185 (365)
T d1jofa_         113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD--PTETYLYSADLTANKLWTHRKLASGEVELVGS-----  185 (365)
T ss_dssp             EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCEEEEEE-----
T ss_pred             EccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEEC--CCCCEEEEeeCCCCEEEEEEccCCCceeeccc-----
Confidence            44221 0            0   00  11123346789998  99998887764 34677776543322211100     


Q ss_pred             EEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCCCCCc
Q psy12911        165 CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPANPKDN  243 (356)
Q Consensus       165 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~~~~~  243 (356)
                                                     ............++|+|+    +.++ ++...++.|.+|+++.......
T Consensus       186 -------------------------------~~~~~~g~gPr~i~f~pd----g~~~yv~~e~~~~V~v~~~~~~~~~~~  230 (365)
T d1jofa_         186 -------------------------------VDAPDPGDHPRWVAMHPT----GNYLYALMEAGNRICEYVIDPATHMPV  230 (365)
T ss_dssp             -------------------------------EECSSTTCCEEEEEECTT----SSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             -------------------------------eeecCCCCceEEEEECCC----CceEEEeccCCCEEEEEEecCCCceEE
Confidence                                           000012345688999999    5555 5555688899999976643333


Q ss_pred             ceeeeecCCCC------CCCcccccceEEEEEeCCCCEEEEEcC------CCeEEEEEcCcceec------CCCCCCccc
Q psy12911        244 FTFKCHRSNGG------AGGVQDIYAVNGIVFHPVHGTLATVGS------EGTFSFWDKDARTKL------KPSEAMDMS  305 (356)
Q Consensus       244 ~~~~~~~~~~~------~~~~~~~~~i~~i~~sp~~~~l~s~~~------dg~i~iwd~~~~~~~------~~~~~~~~~  305 (356)
                      ...........      ............+.++|+|++|+++..      .+.|..|++.....+      .........
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~  310 (365)
T d1jofa_         231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH  310 (365)
T ss_dssp             EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT
T ss_pred             EEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCC
Confidence            22222111000      001111124567899999999887632      234777776542111      111222345


Q ss_pred             eEEEEECC-CCCEEEEEecc
Q psy12911        306 ISTCALNH-NGQIFAYAVSY  324 (356)
Q Consensus       306 v~~~~~s~-~~~~l~~~s~~  324 (356)
                      ..+++++| +|++|+++..+
T Consensus       311 p~~i~~~p~~G~~l~va~~~  330 (365)
T d1jofa_         311 SNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             CCCEEECTTCTTEEEEECSS
T ss_pred             ccEEEecCCCCCEEEEEeCC
Confidence            67899998 89999888643

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.26  E-value=3.1e-08  Score=79.47  Aligned_cols=240  Identities=9%  Similarity=0.035  Sum_probs=146.9

Q ss_pred             CCCeeEEEecCCCCCceEEEEEeC-------CCeEEEEeccCCCceeeeeec--cCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911         29 EDSISCMAFSPSTLPQYFLIAGSW-------DNNVRCWEVEPNGKTIPKSMQ--GMSEPVLDVAWIDDGTKVFMAGCDKT   99 (356)
Q Consensus        29 ~~~V~~~~~~~~~~~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~   99 (356)
                      -.....++|.++|   ++.++...       +|.|..||..++.........  .....-..++|.++++.++++...+.
T Consensus        17 ~~g~EGpa~d~dG---~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~   93 (314)
T d1pjxa_          17 IPGAEGPVFDKNG---DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             CTTCEEEEECTTS---CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             CCCCeEeEEeCCC---CEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCe
Confidence            3345678999999   77665432       467888888763322211111  11223568999999998888877778


Q ss_pred             EEEEEcCCCceeeecc-cC----CCeeEEEEEeCCCCCeEEEEEC---------------CCeEEEEeCCCCCceEEEeC
Q psy12911        100 VKCWDLASNQSMQVAQ-HD----APVKTCHWIKAPNYTCLMTGSW---------------DKTLKFWDLRTPQPIMTINL  159 (356)
Q Consensus       100 i~vwd~~~~~~~~~~~-~~----~~v~~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~  159 (356)
                      |..++...+....... ..    ...+.+++.  ++|.+.++-..               +|.|..++. .++.......
T Consensus        94 i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d--~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~  170 (314)
T d1pjxa_          94 LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD--YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTA  170 (314)
T ss_dssp             EEEEETTSCEEECCSBCTTSCBCBCCCEEEEC--TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEE
T ss_pred             EEEEeCCCcEEEEEeccccccccCCCcEEEEC--CCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCC
Confidence            9999987665433211 11    135778998  89988776422               234555543 2333222221


Q ss_pred             --CCeeEEEecCCC----eEEE-EecCCeEEEEeCCCCcccc-----ccccCcccccceEEEeecCCCCCCCeEEEeecC
Q psy12911        160 --PERCYCADVDYP----LAVV-GTAGRGIVLYQLEGKPQEF-----KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE  227 (356)
Q Consensus       160 --~~~~~~~~~~~~----~~~~-~~~d~~i~i~d~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d  227 (356)
                        ..+-+++++.++    .+++ -+..+.|..||+.......     .............+++..+    ++++++....
T Consensus       171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~----GnlyVa~~~~  246 (314)
T d1pjxa_         171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED----NNLLVANWGS  246 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT----CCEEEEEETT
T ss_pred             cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecC----CcEEEEEcCC
Confidence              123455655553    3444 4667889999876432211     1111112233567888887    7777777788


Q ss_pred             CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcC
Q psy12911        228 GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKD  291 (356)
Q Consensus       228 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~  291 (356)
                      +.|.+|+-+..  .....+.....           ..++++|.|+++ ++++.+.+|.|...++.
T Consensus       247 g~I~~~dp~~g--~~~~~i~~p~~-----------~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         247 SHIEVFGPDGG--QPKMRIRCPFE-----------KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TEEEEECTTCB--SCSEEEECSSS-----------CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CEEEEEeCCCC--EEEEEEECCCC-----------CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            88999876654  34444444333           688999999986 55777788988888865

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.16  E-value=1.6e-07  Score=75.44  Aligned_cols=242  Identities=7%  Similarity=-0.010  Sum_probs=143.3

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC----CCeEEEE
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC----DKTVKCW  103 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vw  103 (356)
                      ..-.+..++|.++|   ++.++-...+.|..|+.+.  ................+++.++|+++++...    .+.+...
T Consensus        38 ~~~~lEG~~~D~~G---~Ly~~D~~~g~I~ri~p~g--~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~  112 (319)
T d2dg1a1          38 KGLQLEGLNFDRQG---QLFLLDVFEGNIFKINPET--KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA  112 (319)
T ss_dssp             SCCCEEEEEECTTS---CEEEEETTTCEEEEECTTT--CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             CCcCcEeCEECCCC---CEEEEECCCCEEEEEECCC--CeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEE
Confidence            34456789999999   8777777888898888766  2233334445567889999999987776543    2345556


Q ss_pred             EcCCCceeeeccc---CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCC
Q psy12911        104 DLASNQSMQVAQH---DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR  180 (356)
Q Consensus       104 d~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  180 (356)
                      +..++.......+   ......+++.  ++|++.++.. .+         ...    .....+..+.+++.         
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~nd~~~d--~~G~l~vtd~-~~---------~~~----~~~g~v~~~~~dg~---------  167 (319)
T d2dg1a1         113 TENGDNLQDIIEDLSTAYCIDDMVFD--SKGGFYFTDF-RG---------YST----NPLGGVYYVSPDFR---------  167 (319)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEEC--TTSCEEEEEC-CC---------BTT----BCCEEEEEECTTSC---------
T ss_pred             cCCCceeeeeccCCCcccCCcceeEE--eccceeeccc-cc---------ccc----cCcceeEEEecccc---------
Confidence            6665554443322   2346778887  8887555422 11         000    00001111111111         


Q ss_pred             eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCe-EEEeecCCeEEEEEeCCCCCCCcceeeee--cCCCCCCC
Q psy12911        181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAG-YGLGSVEGRVAIQYVNPANPKDNFTFKCH--RSNGGAGG  257 (356)
Q Consensus       181 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~dg~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~  257 (356)
                      .+...            . ..-.....++|+|+    +.. +++-+..+.|..|+++... .........  ....    
T Consensus       168 ~~~~~------------~-~~~~~pnGia~s~d----g~~lyvad~~~~~I~~~d~~~~g-~~~~~~~~~~~~~~~----  225 (319)
T d2dg1a1         168 TVTPI------------I-QNISVANGIALSTD----EKVLWVTETTANRLHRIALEDDG-VTIQPFGATIPYYFT----  225 (319)
T ss_dssp             CEEEE------------E-EEESSEEEEEECTT----SSEEEEEEGGGTEEEEEEECTTS-SSEEEEEEEEEEECC----
T ss_pred             eeEEE------------e-eccceeeeeeeccc----cceEEEecccCCceEEEEEcCCC-ceeccccceeeeccC----
Confidence            01000            0 00123467899998    554 4555678899999886542 111111110  0000    


Q ss_pred             cccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC------CCccceEEEEECCCCCEEEEEecc
Q psy12911        258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE------AMDMSISTCALNHNGQIFAYAVSY  324 (356)
Q Consensus       258 ~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~s~~  324 (356)
                        .......+++.++|++.++....+.|.+||. +|+.+.++.      ++...+++++|.+++..+++.+.+
T Consensus       226 --~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         226 --GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             --SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             --CccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence              0002457999999999888888999999996 577766553      233467899999998877776643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=2.1e-07  Score=73.20  Aligned_cols=237  Identities=5%  Similarity=-0.023  Sum_probs=149.8

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeecc------CCcceeEEEEccCC-CeEEE-EcCCCeEEE
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQG------MSEPVLDVAWIDDG-TKVFM-AGCDKTVKC  102 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~s~~~-~~l~~-~~~dg~i~v  102 (356)
                      .-..+++++++   +++++-..++.|++||.+.  ..+ ..+..      .......+++..+. ..+++ .+.++.|.+
T Consensus        24 ~P~gvavd~dg---~i~VaD~~n~rI~v~d~~G--~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~   97 (279)
T d1q7fa_          24 EPSGVAVNAQN---DIIVADTNNHRIQIFDKEG--RFK-FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI   97 (279)
T ss_dssp             CEEEEEECTTC---CEEEEEGGGTEEEEECTTS--CEE-EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccEEEEcCCC---CEEEEECCCCEEEEEeCCC--CEE-EEecccCCCcccccccccccccccccccceeccCCcccccc
Confidence            35789999998   8887777788999999754  222 22211      11233456665543 34443 334567888


Q ss_pred             EEcCCCceeee-cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-----eeEEEecCCCeEEEE
Q psy12911        103 WDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-----RCYCADVDYPLAVVG  176 (356)
Q Consensus       103 wd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  176 (356)
                      ++........+ .........+++.  +++.++++....+.+.+++. +++.+..+....     ..++++..+..+++.
T Consensus        98 ~~~~g~~~~~~~~~~~~~p~~~avd--~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_          98 YNQYGQFVRKFGATILQHPRGVTVD--NKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             ECTTSCEEEEECTTTCSCEEEEEEC--TTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             ccccccceeecCCCcccccceeccc--cCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeee
Confidence            87654333322 2344567788888  88888888777788989884 566777664332     244555666677777


Q ss_pred             ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec-CCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV-EGRVAIQYVNPANPKDNFTFKCHRSNGGA  255 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  255 (356)
                      ...+.|.+||....... .............+++.++    ++.+++-.. ++.|.+|+.+.   +.+.++......   
T Consensus       175 ~~~~~V~~~d~~G~~~~-~~g~~g~~~~P~giavD~~----G~i~Vad~~~~~~v~~f~~~G---~~~~~~~~~~~~---  243 (279)
T d1q7fa_         175 NRAHCVKVFNYEGQYLR-QIGGEGITNYPIGVGINSN----GEILIADNHNNFNLTIFTQDG---QLISALESKVKH---  243 (279)
T ss_dssp             GGGTEEEEEETTCCEEE-EESCTTTSCSEEEEEECTT----CCEEEEECSSSCEEEEECTTS---CEEEEEEESSCC---
T ss_pred             ccccceeeeecCCceee-eecccccccCCcccccccC----CeEEEEECCCCcEEEEECCCC---CEEEEEeCCCCC---
Confidence            77899999998764321 1111123345678999998    676665443 45688876432   344444332211   


Q ss_pred             CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911        256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART  294 (356)
Q Consensus       256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~  294 (356)
                            .....+++.|+|.++++ +.+.+|++|......
T Consensus       244 ------~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         244 ------AQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  275 (279)
T ss_dssp             ------SCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             ------CCEeEEEEeCCCcEEEE-eCCCeEEEEEeeeec
Confidence                  14678999999976655 578999999987654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.14  E-value=4.3e-08  Score=78.58  Aligned_cols=234  Identities=9%  Similarity=-0.018  Sum_probs=138.3

Q ss_pred             ceeEEEEccCCCeEEEEcC-------CCeEEEEEcCCCceeeecc-----cCCCeeEEEEEeCCCCCeEEEEECCCeEEE
Q psy12911         78 PVLDVAWIDDGTKVFMAGC-------DKTVKCWDLASNQSMQVAQ-----HDAPVKTCHWIKAPNYTCLMTGSWDKTLKF  145 (356)
Q Consensus        78 ~v~~~~~s~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i  145 (356)
                      ....++|.++|++.++...       +++|..||..+++......     ....-..++|.  +++..++++...+.|..
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~--~dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD--RDANQLFVADMRLGLLV   96 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC--SSSSEEEEEETTTEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEe--CCCCEEEEEECCCeEEE
Confidence            3566789999987766433       4679999998877544221     22345789998  99988888887788888


Q ss_pred             EeCCCCCceEEEe-CC------CeeEEEecCCCeEEEEec---------------CCeEEEEeCCCCccccccccCcccc
Q psy12911        146 WDLRTPQPIMTIN-LP------ERCYCADVDYPLAVVGTA---------------GRGIVLYQLEGKPQEFKKTESPLKY  203 (356)
Q Consensus       146 wd~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~---------------d~~i~i~d~~~~~~~~~~~~~~~~~  203 (356)
                      +|........... ..      .+-+.++.++.+.++-..               .|.|..++.......   .. ..-.
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~---~~-~~~~  172 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQ---VD-TAFQ  172 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEE---EE-EEES
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeE---ee-CCcc
Confidence            8876542211111 11      122445555544443211               234444443322111   11 0112


Q ss_pred             cceEEEeecCCCCCCC-eEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC
Q psy12911        204 QNRCIAIFRDKKKQPA-GYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE  282 (356)
Q Consensus       204 ~i~~~~~~~~~~~~~~-~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d  282 (356)
                      ....++++++...... ++++-+..+.|..|+++...  .+...........   . .......+++.++|++.++....
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g--~~~~~~~~~~~~~---~-~~~~pdGiavD~~GnlyVa~~~~  246 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA--KIENKKVWGHIPG---T-HEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT--EEEEEEEEEECCC---C-SSCEEEEEEEBTTCCEEEEEETT
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCcc--ccceeeEEEEccc---c-ccccceeeEEecCCcEEEEEcCC
Confidence            3367888887322122 44555678888888876431  1111110000000   0 00024579999999998888888


Q ss_pred             CeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911        283 GTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       283 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      +.|.+||.+.++.+..+......+++++|.||++.|..+..
T Consensus       247 g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~  287 (314)
T d1pjxa_         247 SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             CEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEEC
Confidence            99999999888766666655667899999999986655543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=3.8e-08  Score=77.10  Aligned_cols=207  Identities=14%  Similarity=0.106  Sum_probs=121.3

Q ss_pred             eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCC---eEEEEeCCCCCceEEEeCCC--eeEEEecCCCeE
Q psy12911         99 TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK---TLKFWDLRTPQPIMTINLPE--RCYCADVDYPLA  173 (356)
Q Consensus        99 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~  173 (356)
                      .|.|.|........+..+...+.+.+||  |||+.||......   .+.+.+...+..........  ....+++++..+
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wS--PDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWS--PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEEC--CCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCee
Confidence            6888898877777777788889999999  9999999776543   47777777666544444333  345566777766


Q ss_pred             EEEec-CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCC
Q psy12911        174 VVGTA-GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSN  252 (356)
Q Consensus       174 ~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  252 (356)
                      +.... .+...++............. ..........++++.   ...+++...++...+|..+..... ...+..... 
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~-  171 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDS---QNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGS-  171 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTS---SEEEEEECTTSSCEEEEEETTSSC-CEECCCSSS-
T ss_pred             eEeeecCCccceeecccccccceeee-ecccccccccccccc---ccceecccccCCceEeeeeccccc-ceeeecccc-
Confidence            65443 33333333222211111111 122223344455552   234455555665555555433222 222222222 


Q ss_pred             CCCCCcccccceEEEEEeCCCCEEEEEcCCC---eEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911        253 GGAGGVQDIYAVNGIVFHPVHGTLATVGSEG---TFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD  325 (356)
Q Consensus       253 ~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d  325 (356)
                                ......|+|+++.++..+.++   .|.+.+...+...  +..+........|||||+.|+..+...
T Consensus       172 ----------~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~  235 (269)
T d2hqsa1         172 ----------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQG  235 (269)
T ss_dssp             ----------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEET
T ss_pred             ----------cccccccccccceeEEEeecCCceeeeEeecccccce--EeecCccccceEECCCCCEEEEEEcCC
Confidence                      567789999999888765543   4455555544332  223445567889999999999887543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.03  E-value=2.3e-07  Score=72.95  Aligned_cols=221  Identities=10%  Similarity=-0.012  Sum_probs=140.4

Q ss_pred             ceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecc-------cCCCeeEEEEEeCCC-CCeEEE-EECCCeEEEEeC
Q psy12911         78 PVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-------HDAPVKTCHWIKAPN-YTCLMT-GSWDKTLKFWDL  148 (356)
Q Consensus        78 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~-~~~l~~-~~~dg~i~iwd~  148 (356)
                      ....|+++++|+.+++-..++.|++||.+ ++.+...+       .......+++.  .+ +..+++ .+.++.|..++.
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV--RNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE--TTTTEEEEEECGGGCEEEEECT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccccc--ccccccceeccCCccccccccc
Confidence            35789999999887777778999999976 44443221       11233455655  44 333433 334567877774


Q ss_pred             CCCCceEEEeCCC----eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe
Q psy12911        149 RTPQPIMTINLPE----RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG  224 (356)
Q Consensus       149 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  224 (356)
                       .++....+....    ..+.+...+..+++....+.+.+++....... ..-..........+++.++    +..+++.
T Consensus       101 -~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~-~~g~~~~~~~~~~i~~d~~----g~i~v~d  174 (279)
T d1q7fa_         101 -YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH-KFGCSKHLEFPNGVVVNDK----QEIFISD  174 (279)
T ss_dssp             -TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE-EEECTTTCSSEEEEEECSS----SEEEEEE
T ss_pred             -cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceee-cccccccccccceeeeccc----eeEEeee
Confidence             566666665332    34556666666777677778888887654211 1111223455677888887    7788888


Q ss_pred             ecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC-CCeEEEEEcCcceecCCCCC--
Q psy12911        225 SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS-EGTFSFWDKDARTKLKPSEA--  301 (356)
Q Consensus       225 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~--  301 (356)
                      ...+.|++|+.+..   .+.++.. ..        .......|++.++|+++++-.. ++.|.+|+. +|+.+..+..  
T Consensus       175 ~~~~~V~~~d~~G~---~~~~~g~-~g--------~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~  241 (279)
T d1q7fa_         175 NRAHCVKVFNYEGQ---YLRQIGG-EG--------ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV  241 (279)
T ss_dssp             GGGTEEEEEETTCC---EEEEESC-TT--------TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS
T ss_pred             ccccceeeeecCCc---eeeeecc-cc--------cccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCC
Confidence            88899999987542   3333321 11        0114678999999998877544 557999985 4776655532  


Q ss_pred             CccceEEEEECCCCCEEEE
Q psy12911        302 MDMSISTCALNHNGQIFAY  320 (356)
Q Consensus       302 ~~~~v~~~~~s~~~~~l~~  320 (356)
                      .......|++.|||+++++
T Consensus       242 ~~~~p~~vav~~dG~l~V~  260 (279)
T d1q7fa_         242 KHAQCFDVALMDDGSVVLA  260 (279)
T ss_dssp             CCSCEEEEEEETTTEEEEE
T ss_pred             CCCCEeEEEEeCCCcEEEE
Confidence            2335789999999986554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4e-07  Score=76.98  Aligned_cols=104  Identities=10%  Similarity=0.113  Sum_probs=72.7

Q ss_pred             CCeeEEEecCCCCCceEEEEEe---------CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911         30 DSISCMAFSPSTLPQYFLIAGS---------WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV  100 (356)
Q Consensus        30 ~~V~~~~~~~~~~~~~~l~~~~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  100 (356)
                      -.+....||||+   ++++...         ..+.+.++|+.++....+.........+....|||||+.||... ++.|
T Consensus        61 ~~~~~~~~SpD~---~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl  136 (465)
T d1xfda1          61 LRAIRYEISPDR---EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNI  136 (465)
T ss_dssp             TTCSEEEECTTS---SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEE
T ss_pred             cccceeEECCCC---CeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceE
Confidence            367788899999   8777663         35788999998844333333333455677789999999998876 6789


Q ss_pred             EEEEcCCCceeeec--ccCCC-----------------eeEEEEEeCCCCCeEEEEEC
Q psy12911        101 KCWDLASNQSMQVA--QHDAP-----------------VKTCHWIKAPNYTCLMTGSW  139 (356)
Q Consensus       101 ~vwd~~~~~~~~~~--~~~~~-----------------v~~~~~~~~~~~~~l~~~~~  139 (356)
                      .+.+..++..+++.  +....                 -.++-|+  |||+.|+....
T Consensus       137 ~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS--PDgk~iaf~~~  192 (465)
T d1xfda1         137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS--PDGTRLAYAAI  192 (465)
T ss_dssp             EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC--TTSSEEEEEEE
T ss_pred             EEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEEC--CCCCeEEEEEe
Confidence            99988777655422  11111                 2467799  99999998653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.98  E-value=3.7e-07  Score=74.78  Aligned_cols=239  Identities=9%  Similarity=0.020  Sum_probs=130.6

Q ss_pred             eEEEEEeC--CCeEEEEeccCCCcee--eee-eccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC-ceeeec--cc
Q psy12911         45 YFLIAGSW--DNNVRCWEVEPNGKTI--PKS-MQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN-QSMQVA--QH  116 (356)
Q Consensus        45 ~~l~~~~~--dg~i~vw~~~~~~~~~--~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~--~~  116 (356)
                      ..|++|+.  .+.|.++..+.....+  ... .......+.-|+|++++++|+++.. +.+..|.+... ......  ..
T Consensus         3 ~~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~   81 (365)
T d1jofa_           3 HHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEEC
T ss_pred             eEEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecC
Confidence            45777864  5678887776543332  122 2234556778999999999988764 56778877643 232221  22


Q ss_pred             CCCeeEEEEEeCCCCCeEEEEE---CCCeEEEEeCCCC-CceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCcc
Q psy12911        117 DAPVKTCHWIKAPNYTCLMTGS---WDKTLKFWDLRTP-QPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQ  192 (356)
Q Consensus       117 ~~~v~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  192 (356)
                      ......+.++  ++++.++...   ..+.|..+.+... .....+...                 ..+.+  ..      
T Consensus        82 ~~~p~~v~~~--~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~-----------------~~~~~--~~------  134 (365)
T d1jofa_          82 GGHPRANDAD--TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVS-----------------ETGKL--EK------  134 (365)
T ss_dssp             CSSGGGGCTT--SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEEC-----------------TTCCE--EE------
T ss_pred             CCCcEEEEEC--CCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeee-----------------eccee--cC------
Confidence            3345566666  7777443322   2355655543221 111111100                 00000  00      


Q ss_pred             ccccccCcccccceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeC
Q psy12911        193 EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP  271 (356)
Q Consensus       193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp  271 (356)
                      .......+....+.++.++|+    +++++++. ....|.+|+++...  .+..........      .......++|+|
T Consensus       135 ~~~~~~~q~~~h~h~v~~sPd----G~~l~v~d~g~d~v~~~~~~~~g--~~~~~~~~~~~~------~g~gPr~i~f~p  202 (365)
T d1jofa_         135 NVQNYEYQENTGIHGMVFDPT----ETYLYSADLTANKLWTHRKLASG--EVELVGSVDAPD------PGDHPRWVAMHP  202 (365)
T ss_dssp             EEEEEECCTTCCEEEEEECTT----SSEEEEEETTTTEEEEEEECTTS--CEEEEEEEECSS------TTCCEEEEEECT
T ss_pred             cccCcccCCCCcceEEEECCC----CCEEEEeeCCCCEEEEEEccCCC--ceeeccceeecC------CCCceEEEEECC
Confidence            000001112334679999999    77666665 35678888876432  111111111100      001578899999


Q ss_pred             CCCEEEE-EcCCCeEEEEEcCcceecC-------------------CCCCCccceEEEEECCCCCEEEEEec
Q psy12911        272 VHGTLAT-VGSEGTFSFWDKDARTKLK-------------------PSEAMDMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       272 ~~~~l~s-~~~dg~i~iwd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~l~~~s~  323 (356)
                      +++++.+ ...+++|.+|++..++...                   ....+......+.++|||++|+++..
T Consensus       203 dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr  274 (365)
T d1jofa_         203 TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence            9988755 4567899999987543211                   01122334668999999999988753

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.88  E-value=4.4e-06  Score=65.95  Aligned_cols=225  Identities=12%  Similarity=0.001  Sum_probs=137.8

Q ss_pred             EEEEccCCCeEE-EEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC
Q psy12911         81 DVAWIDDGTKVF-MAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL  159 (356)
Q Consensus        81 ~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  159 (356)
                      +..|.+....|+ +=-..+.|..||..+++... ......+.++++.  +++.++++ +.+ .|.++|..+++.......
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~~~~~~~~i~~~--~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HALPFMGSALAKI--SDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EECSSCEEEEEEE--ETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EECCCCcEEEEEe--cCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            456887544444 44457899999999887643 3345678889888  88776664 444 588999988875443332


Q ss_pred             CC-------eeEEEecCCCeEEEEec----CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCC-eEEEeecC
Q psy12911        160 PE-------RCYCADVDYPLAVVGTA----GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPA-GYGLGSVE  227 (356)
Q Consensus       160 ~~-------~~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~d  227 (356)
                      ..       .-..++..+.+.++...    .+.-.+|.+..+....  .. ..-.....++++++    +. ++++-+..
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~--~~-~~~~~~Ng~~~s~d----~~~l~~~dt~~  169 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK--LF-ADISIPNSICFSPD----GTTGYFVDTKV  169 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE--EE-EEESSEEEEEECTT----SCEEEEEETTT
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE--Ee-eccCCcceeeecCC----CceEEEeeccc
Confidence            11       12345555554444322    2334455554442211  11 11223467889998    44 45666678


Q ss_pred             CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceE
Q psy12911        228 GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSIS  307 (356)
Q Consensus       228 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  307 (356)
                      +.|..|+++...................     ......+++..+|++.++.-..+.|..||. +|+.+..+.-....++
T Consensus       170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~-----~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T  243 (295)
T d2ghsa1         170 NRLMRVPLDARTGLPTGKAEVFIDSTGI-----KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTT  243 (295)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTS-----SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEE
T ss_pred             ceeeEeeecccccccccceEEEeccCcc-----cccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceE
Confidence            8899998865432221111110000000     014678999999998888777889999995 5888877765556789


Q ss_pred             EEEEC-CCCCEEEEEec
Q psy12911        308 TCALN-HNGQIFAYAVS  323 (356)
Q Consensus       308 ~~~~s-~~~~~l~~~s~  323 (356)
                      +++|- +|.+.|..++.
T Consensus       244 ~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         244 CPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEEESTTSCEEEEEEB
T ss_pred             EEEEeCCCCCEEEEEEC
Confidence            99996 77777665543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.86  E-value=1.6e-06  Score=67.81  Aligned_cols=94  Identities=6%  Similarity=0.105  Sum_probs=66.5

Q ss_pred             EecCC--CCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC----C--CeEEEEEcCC
Q psy12911         36 AFSPS--TLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC----D--KTVKCWDLAS  107 (356)
Q Consensus        36 ~~~~~--~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d--g~i~vwd~~~  107 (356)
                      ..+|+  |   +.+|..+ ++.|.+.|+..+.  . +.+..+.+.+...+|||||+.||....    +  ..|.+++..+
T Consensus         5 ~~sPdi~G---~~v~f~~-~~dl~~~d~~~g~--~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~   77 (281)
T d1k32a2           5 LLNPDIHG---DRIIFVC-CDDLWEHDLKSGS--T-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN   77 (281)
T ss_dssp             CEEEEEET---TEEEEEE-TTEEEEEETTTCC--E-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred             ccCCCCCC---CEEEEEe-CCcEEEEECCCCC--E-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence            35788  8   6776654 5678888888732  2 456667788899999999999986543    1  2488888888


Q ss_pred             Cceeeeccc-------CCCeeEEEEEeCCCCCeEEEEE
Q psy12911        108 NQSMQVAQH-------DAPVKTCHWIKAPNYTCLMTGS  138 (356)
Q Consensus       108 ~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~~~~  138 (356)
                      ++...+..+       ........|+  |+++.|+...
T Consensus        78 g~~~~lt~~~~~~~~~~~~~~~~~~s--pdg~~l~~~~  113 (281)
T d1k32a2          78 GEIKRITYFSGKSTGRRMFTDVAGFD--PDGNLIISTD  113 (281)
T ss_dssp             TEEEECCCCCEEEETTEECSEEEEEC--TTCCEEEEEC
T ss_pred             CceEEeeecCCCccCccccccccccC--CCCCEEEEEE
Confidence            877664322       2345677898  9999888754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.5e-06  Score=73.47  Aligned_cols=136  Identities=13%  Similarity=0.087  Sum_probs=93.2

Q ss_pred             EEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec-cCCcceeEEEEccCCCeEEEEc---------CCCeEEEEE
Q psy12911         35 MAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-GMSEPVLDVAWIDDGTKVFMAG---------CDKTVKCWD  104 (356)
Q Consensus        35 ~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~---------~dg~i~vwd  104 (356)
                      ..|.+++   .++.. ..+|.|.+||+.++....+.... .....+....||||+++++...         ..+.+.++|
T Consensus        22 ~~W~~~~---~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d   97 (465)
T d1xfda1          22 AKWISDT---EFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (465)
T ss_dssp             CCBSSSS---CBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             CEEeCCC---cEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence            3588887   66543 55789999999885443322221 1234677889999999988763         357899999


Q ss_pred             cCCCceeeec---ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC---------------------
Q psy12911        105 LASNQSMQVA---QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP---------------------  160 (356)
Q Consensus       105 ~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------  160 (356)
                      +.+++...+.   .....+....|+  |||+.|+... ++.|.+.+..++..++.....                     
T Consensus        98 ~~~~~~~~l~~~~~~~~~l~~~~wS--PDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~  174 (465)
T d1xfda1          98 IPHGDPQSLDPPEVSNAKLQYAGWG--PKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (465)
T ss_dssp             SSSCCCEECCCTTCCSCCCSBCCBC--SSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             ccCCceeeccCccCCccccceeeec--cCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccc
Confidence            9998876543   234456678899  9999998876 678999988777665544321                     


Q ss_pred             CeeEEEecCCCeEEEEe
Q psy12911        161 ERCYCADVDYPLAVVGT  177 (356)
Q Consensus       161 ~~~~~~~~~~~~~~~~~  177 (356)
                      ...+.+++++..|+...
T Consensus       175 ~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         175 HIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             SEEEEECTTSSEEEEEE
T ss_pred             cceEEECCCCCeEEEEE
Confidence            12445678887776653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.84  E-value=4.8e-07  Score=72.03  Aligned_cols=196  Identities=14%  Similarity=0.038  Sum_probs=116.5

Q ss_pred             ceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce-EE
Q psy12911         78 PVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI-MT  156 (356)
Q Consensus        78 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~  156 (356)
                      .+..++++|||+++++...+++|..|+.. ++...+......+.+++|.  ++|+++++...++.+..++....... ..
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~--~dG~l~v~~~~~~~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFT--SNGDLVATGWNADSIPVVSLVKSDGTVET  105 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEEC--TTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEc--CCCCeEEEecCCceEEEEEecccccceee
Confidence            57789999999999999889999999865 4444556667889999999  99999998888888888875443211 11


Q ss_pred             EeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911        157 INLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN  236 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  236 (356)
                      +.                           +.            ........+++.++    +.++++...++.+..++..
T Consensus       106 ~~---------------------------~~------------~~~~~~n~i~~~~~----g~~~v~~~~~~~i~~~~~~  142 (302)
T d2p4oa1         106 LL---------------------------TL------------PDAIFLNGITPLSD----TQYLTADSYRGAIWLIDVV  142 (302)
T ss_dssp             EE---------------------------EC------------TTCSCEEEEEESSS----SEEEEEETTTTEEEEEETT
T ss_pred             cc---------------------------cc------------CCccccceeEEccC----CCEEeeccccccceeeecc
Confidence            10                           00            01122345555555    4555555555555555443


Q ss_pred             CCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC--CCccceEEEEECCC
Q psy12911        237 PANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE--AMDMSISTCALNHN  314 (356)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~  314 (356)
                      ....   .......................+.+.. +.++++.+..+.|+.++...........  ........++|+++
T Consensus       143 ~~~~---~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~d  218 (302)
T d2p4oa1         143 QPSG---SIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE  218 (302)
T ss_dssp             TTEE---EEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTT
T ss_pred             CCcc---eeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCC
Confidence            3210   0001000000000011111456777764 3566677788999999887654333221  11234567999999


Q ss_pred             CCEEEEEec
Q psy12911        315 GQIFAYAVS  323 (356)
Q Consensus       315 ~~~l~~~s~  323 (356)
                      |+++++...
T Consensus       219 G~l~va~~~  227 (302)
T d2p4oa1         219 GNLYGATHI  227 (302)
T ss_dssp             CCEEEECBT
T ss_pred             CCEEEEEcC
Confidence            987766543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.76  E-value=1.3e-06  Score=67.83  Aligned_cols=195  Identities=6%  Similarity=-0.112  Sum_probs=120.5

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS  110 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  110 (356)
                      ....+++++++   .++++....+.+++++-..  ........ ......++++.++++++++-..+..+..++......
T Consensus        58 ~p~gvav~~~g---~i~v~d~~~~~i~~~~~~~--~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~  131 (260)
T d1rwia_          58 QPQGLAVDGAG---TVYVTDFNNRVVTLAAGSN--NQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ  131 (260)
T ss_dssp             SCCCEEECTTC---CEEEEETTTEEEEECTTCS--CCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC
T ss_pred             CceEEEEcCCC---CEEEeeeeeceeeeeeecc--ceeeeeee-eeeecccccccccceeEeecccccccccccccccee
Confidence            45688899998   7777766666666665433  22222222 234578999999998877776677788887765443


Q ss_pred             ee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCC
Q psy12911        111 MQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEG  189 (356)
Q Consensus       111 ~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  189 (356)
                      .. ..........+++.  ++++++++...++.|..+|...... ..+..                              
T Consensus       132 ~~~~~~~~~~p~~i~~~--~~g~~~v~~~~~~~i~~~d~~~~~~-~~~~~------------------------------  178 (260)
T d1rwia_         132 TVLPFTGLNDPDGVAVD--NSGNVYVTDTDNNRVVKLEAESNNQ-VVLPF------------------------------  178 (260)
T ss_dssp             EECCCCSCCSCCEEEEC--TTCCEEEEEGGGTEEEEECTTTCCE-EECCC------------------------------
T ss_pred             eeeeecccCCcceeeec--CCCCEeeecccccccccccccccee-eeeec------------------------------
Confidence            33 22223456788888  8888888777778888888654321 11110                              


Q ss_pred             CccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEE
Q psy12911        190 KPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVF  269 (356)
Q Consensus       190 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  269 (356)
                                ..-.....+++.++    +.++++....+.|..++.+...   ...+ .....         .....|++
T Consensus       179 ----------~~~~~p~gi~~d~~----g~l~vsd~~~~~i~~~~~~~~~---~~~~-~~~~~---------~~P~~i~~  231 (260)
T d1rwia_         179 ----------TDITAPWGIAVDEA----GTVYVTEHNTNQVVKLLAGSTT---STVL-PFTGL---------NTPLAVAV  231 (260)
T ss_dssp             ----------SSCCSEEEEEECTT----CCEEEEETTTTEEEEECTTCSC---CEEC-CCCSC---------CCEEEEEE
T ss_pred             ----------cccCCCccceeeee----eeeeeeecCCCEEEEEeCCCCe---EEEE-ccCCC---------CCeEEEEE
Confidence                      01123456777776    5666666666777666544321   1111 11100         14678999


Q ss_pred             eCCCCEEEEEcCCCeEEEEEcC
Q psy12911        270 HPVHGTLATVGSEGTFSFWDKD  291 (356)
Q Consensus       270 sp~~~~l~s~~~dg~i~iwd~~  291 (356)
                      +++|.++++-..+++|+.++..
T Consensus       232 d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         232 DSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             CTTCCEEEEEGGGTEEEEECCC
T ss_pred             eCCCCEEEEECCCCEEEEEeCC
Confidence            9999988887778877766643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.71  E-value=3.3e-05  Score=63.29  Aligned_cols=117  Identities=12%  Similarity=0.082  Sum_probs=76.2

Q ss_pred             CeeEEEecCCCCCceEEEEEeCCC-----------eEEEEeccCCCceeeeee-ccCCcceeEEEEccCCCeEEEEcCC-
Q psy12911         31 SISCMAFSPSTLPQYFLIAGSWDN-----------NVRCWEVEPNGKTIPKSM-QGMSEPVLDVAWIDDGTKVFMAGCD-   97 (356)
Q Consensus        31 ~V~~~~~~~~~~~~~~l~~~~~dg-----------~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d-   97 (356)
                      .+.......+|   ++++.|+.+.           .+.+||..++........ ..+.......++.++++.++.|+.+ 
T Consensus        21 ~~~~a~~~~~g---kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~   97 (387)
T d1k3ia3          21 PAAAAIEPTSG---RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA   97 (387)
T ss_dssp             CSEEEEETTTT---EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred             ccEEEEEeeCC---EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCC
Confidence            44445556677   8888887421           377999988543322222 2233344567888999998888764 


Q ss_pred             CeEEEEEcCCCceeeecc--cCCCeeEEEEEeCCCCCeEEEEECC------CeEEEEeCCCCC
Q psy12911         98 KTVKCWDLASNQSMQVAQ--HDAPVKTCHWIKAPNYTCLMTGSWD------KTLKFWDLRTPQ  152 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~  152 (356)
                      ..+.+||..+........  ....-..++..  +|+++++.++.+      ..+.+||..+.+
T Consensus        98 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIPGPDMQVARGYQSSATM--SDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEEC--TTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cceeEecCccCcccccccccccccccceeee--cCCceeeeccccccccccceeeeecCCCCc
Confidence            689999999877654221  12222345555  899999988753      358999988764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.41  E-value=0.00018  Score=57.11  Aligned_cols=190  Identities=11%  Similarity=0.056  Sum_probs=111.0

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCC--CeEEEEeccCCCceeeeeec--cCCcceeEEEEccCCCeEEEEcC------
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWD--NNVRCWEVEPNGKTIPKSMQ--GMSEPVLDVAWIDDGTKVFMAGC------   96 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~------   96 (356)
                      ........++++++|   +++++...+  ....++.+...+........  .-......+++.++|++.++...      
T Consensus        79 ~~~~~p~gla~~~dG---~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~  155 (319)
T d2dg1a1          79 SHKANPAAIKIHKDG---RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP  155 (319)
T ss_dssp             CSSSSEEEEEECTTS---CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred             CCCCCeeEEEECCCC---CEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccC
Confidence            344567789999998   777765432  23334444332222222221  11235778999999986665432      


Q ss_pred             CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeE-EEEECCCeEEEEeCCCC-CceEEEe------C--C--CeeE
Q psy12911         97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCL-MTGSWDKTLKFWDLRTP-QPIMTIN------L--P--ERCY  164 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~-~~~~~~~------~--~--~~~~  164 (356)
                      .+.+..++...+....+...-...+.++|+  ++++.| ++-+..+.|..||+... .......      .  .  ..-+
T Consensus       156 ~g~v~~~~~dg~~~~~~~~~~~~pnGia~s--~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl  233 (319)
T d2dg1a1         156 LGGVYYVSPDFRTVTPIIQNISVANGIALS--TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSC  233 (319)
T ss_dssp             CEEEEEECTTSCCEEEEEEEESSEEEEEEC--TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEE
T ss_pred             cceeEEEecccceeEEEeeccceeeeeeec--cccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeee
Confidence            234555665554444444444556889999  988865 44456789999998643 2222111      1  1  1357


Q ss_pred             EEecCCCeEEEEecCCeEEEEeCCCCccccccccC---cccccceEEEeecCCCCCCCeEEEee
Q psy12911        165 CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES---PLKYQNRCIAIFRDKKKQPAGYGLGS  225 (356)
Q Consensus       165 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~  225 (356)
                      +++.++++.++....+.|.+||.............   .....++++++.+.    ...+++.+
T Consensus       234 ~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~----~~~~~~t~  293 (319)
T d2dg1a1         234 CIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPG----TNQLIICS  293 (319)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTT----SCEEEEEE
T ss_pred             eEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCC----CCEEEEEc
Confidence            78888887777788999999997643221111111   12235678899887    44555444

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.39  E-value=7.4e-05  Score=57.98  Aligned_cols=91  Identities=12%  Similarity=0.120  Sum_probs=63.3

Q ss_pred             EEccC--CCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEEC-C-----CeEEEEeCCCCCce
Q psy12911         83 AWIDD--GTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW-D-----KTLKFWDLRTPQPI  154 (356)
Q Consensus        83 ~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~  154 (356)
                      ..+||  |+.++..+ ++.|.+.|+.+++..++..+.+.+...+|+  |||+.|+.... +     ..|.+++..+++..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~S--PDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFF--PDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEEC--TTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEEC--CCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            45788  99888765 567999999999988888888889999999  99999886542 2     24777787766544


Q ss_pred             EEEeCC---------CeeEEEecCCCeEEEE
Q psy12911        155 MTINLP---------ERCYCADVDYPLAVVG  176 (356)
Q Consensus       155 ~~~~~~---------~~~~~~~~~~~~~~~~  176 (356)
                      +.....         .....+++++..++..
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEE
Confidence            322111         1234455666655553

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.35  E-value=0.0003  Score=55.05  Aligned_cols=220  Identities=10%  Similarity=-0.007  Sum_probs=135.6

Q ss_pred             eEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee
Q psy12911         33 SCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ  112 (356)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  112 (356)
                      -+..|.+..  +.+..+--..+.|..||..++ ...  .+ .....+.++++.++|++++++ . ..+.++|..+++...
T Consensus        21 Egp~wd~~~--~~l~wvDi~~~~I~r~d~~~g-~~~--~~-~~~~~~~~i~~~~dg~l~va~-~-~gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          21 EGPTFDPAS--GTAWWFNILERELHELHLASG-RKT--VH-ALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL   92 (295)
T ss_dssp             EEEEEETTT--TEEEEEEGGGTEEEEEETTTT-EEE--EE-ECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred             eCCeEECCC--CEEEEEECCCCEEEEEECCCC-eEE--EE-ECCCCcEEEEEecCCCEEEEE-e-CccEEeecccceeeE
Confidence            456688754  256666557789999998873 222  22 234578899999998766654 4 458999999988655


Q ss_pred             eccc-----CCCeeEEEEEeCCCCCeEEEEECC----CeEEEEeCCCCCceEEEeC--CCeeEEEecCCCeEE-EEecCC
Q psy12911        113 VAQH-----DAPVKTCHWIKAPNYTCLMTGSWD----KTLKFWDLRTPQPIMTINL--PERCYCADVDYPLAV-VGTAGR  180 (356)
Q Consensus       113 ~~~~-----~~~v~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~d~  180 (356)
                      +...     ...++.+.+.  ++|++.++...+    +.-.+|.+..++.......  ..+.++++.++..++ +-+..+
T Consensus        93 l~~~~~~~~~~~~nd~~vd--~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMH--PSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             EECSSTTCTTEEEEEEEEC--TTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred             EeeeecCCCcccceeeEEC--CCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccc
Confidence            3221     2247788888  899876664422    3345666656654333322  224566677777554 456678


Q ss_pred             eEEEEeCCCCcccc------ccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911        181 GIVLYQLEGKPQEF------KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG  254 (356)
Q Consensus       181 ~i~i~d~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  254 (356)
                      .|..|++.......      .............+++..+    +.+.++....+.|..|+-+.   +.+..+.....   
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~----GnlWva~~~~g~V~~~dp~G---~~~~~i~lP~~---  240 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE----GHIWNARWGEGAVDRYDTDG---NHIARYEVPGK---  240 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT----SCEEEEEETTTEEEEECTTC---CEEEEEECSCS---
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCC----CCEEeeeeCCCceEEecCCC---cEeeEecCCCC---
Confidence            99999886432111      1111123345677888777    77777766788888887543   44555544333   


Q ss_pred             CCCcccccceEEEEEe-CCCCEE-EEEc
Q psy12911        255 AGGVQDIYAVNGIVFH-PVHGTL-ATVG  280 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~s-p~~~~l-~s~~  280 (356)
                              .+++++|- |+.+.| +|..
T Consensus       241 --------~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         241 --------QTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             --------BEEEEEEESTTSCEEEEEEB
T ss_pred             --------ceEEEEEeCCCCCEEEEEEC
Confidence                    58999996 565544 4443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.15  E-value=0.0011  Score=53.40  Aligned_cols=225  Identities=10%  Similarity=0.036  Sum_probs=135.4

Q ss_pred             CCCeEEEEcC-CCeEEEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEECCC------------------eEEE
Q psy12911         87 DGTKVFMAGC-DKTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDK------------------TLKF  145 (356)
Q Consensus        87 ~~~~l~~~~~-dg~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------------------~i~i  145 (356)
                      ||++|++... +..|.+.|+.+.++.+  .......+..+...+.++-.+++.++++.                  .+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            7888887764 7899999999988755  33445667777766446777888777632                  3677


Q ss_pred             EeCCCCCceEEEeCCCe--eEEEecCCCeEEEEecCC---------------eE-----------------------EEE
Q psy12911        146 WDLRTPQPIMTINLPER--CYCADVDYPLAVVGTAGR---------------GI-----------------------VLY  185 (356)
Q Consensus       146 wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~---------------~i-----------------------~i~  185 (356)
                      +|..+.+....+.....  ....++++.++++.+.+.               .+                       .+.
T Consensus       178 ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV  257 (459)
T d1fwxa2         178 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  257 (459)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             EecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence            89888877776665443  566777777777765321               22                       333


Q ss_pred             eCCCCccccccccCcccccceEEEeecCCCCCCCeEEE-eecCCeEEEEEeCCCC------CCCcceeeeecCCCCCCCc
Q psy12911        186 QLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL-GSVEGRVAIQYVNPAN------PKDNFTFKCHRSNGGAGGV  258 (356)
Q Consensus       186 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~dg~i~i~~~~~~~------~~~~~~~~~~~~~~~~~~~  258 (356)
                      |.+...........+.......+.++||    +.++++ +..+..+.++|++.-.      ......+.+....+     
T Consensus       258 D~~~~~~~~v~~yIPVpKsPHGV~vSPD----GKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg-----  328 (459)
T d1fwxa2         258 DGRKEASSLFTRYIPIANNPHGCNMAPD----KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-----  328 (459)
T ss_dssp             ECSGG--CSSEEEEEEESSCCCEEECTT----SSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC-----
T ss_pred             cccccCCcceeEEEecCCCCCceEECCC----CCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC-----
Confidence            3332111001101123345677889999    556554 5578999999985210      01112222221111     


Q ss_pred             ccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc----------eecCCCCCC-----ccceEEEEECCCCCEEEEEec
Q psy12911        259 QDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR----------TKLKPSEAM-----DMSISTCALNHNGQIFAYAVS  323 (356)
Q Consensus       259 ~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~s~  323 (356)
                         ..-...+|...|.-..+---|..|.-|++...          ..+..+..|     .....+-...|||++|++...
T Consensus       329 ---lgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk  405 (459)
T d1fwxa2         329 ---LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  405 (459)
T ss_dssp             ---SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             ---cCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecc
Confidence               13456789888877777788999999998643          222233222     111112235799999999875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.10  E-value=0.0011  Score=56.85  Aligned_cols=52  Identities=12%  Similarity=0.020  Sum_probs=36.2

Q ss_pred             CCCEEEEEcCCCeEEEEEcCcceecCCCCCCcc-ceEEEEECCCCC-EEEEEec
Q psy12911        272 VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDM-SISTCALNHNGQ-IFAYAVS  323 (356)
Q Consensus       272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~-~l~~~s~  323 (356)
                      .+.++++|+.||.++-+|.++|+.+.+++-... .-.-+.|..||+ ||++..+
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g  527 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEec
Confidence            456788899999999999999999977652211 111245666885 6666554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.03  E-value=0.0015  Score=53.07  Aligned_cols=120  Identities=10%  Similarity=0.071  Sum_probs=74.6

Q ss_pred             CCCCCeeEEEecCCCCCceEEEEEeCC-CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC------Ce
Q psy12911         27 PPEDSISCMAFSPSTLPQYFLIAGSWD-NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD------KT   99 (356)
Q Consensus        27 ~h~~~V~~~~~~~~~~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~   99 (356)
                      .|.......++.+++   .+++.|+.+ ..+.+||..+........+.. ...-..++..+||+.++.++.+      ..
T Consensus        73 ~~~~~~~~~~~~~~g---~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~  148 (387)
T d1k3ia3          73 KHDMFCPGISMDGNG---QIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKN  148 (387)
T ss_dssp             SCCCSSCEEEECTTS---CEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCC
T ss_pred             CcccceeEEEEecCC---cEEEeecCCCcceeEecCccCcccccccccc-cccccceeeecCCceeeeccccccccccce
Confidence            344444566788998   888888655 589999998744333222222 2223456777899988888753      46


Q ss_pred             EEEEEcCCCceeeecc----------c------CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc
Q psy12911        100 VKCWDLASNQSMQVAQ----------H------DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP  153 (356)
Q Consensus       100 i~vwd~~~~~~~~~~~----------~------~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  153 (356)
                      +.+||..+.+...+..          +      ..... +...  ++++.++.++.++.+.++|..+...
T Consensus       149 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         149 GEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW-LFGW--KKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             EEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCC-EEEC--GGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             eeeecCCCCceeecCCCcccccccccccceeeccceeE-EEEe--CCCCEEEecCcCCcEEecCcccCcE
Confidence            8999998875432111          0      01111 1122  6777777777777888888776643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.90  E-value=0.0055  Score=52.72  Aligned_cols=145  Identities=10%  Similarity=0.056  Sum_probs=82.9

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCC--cceeEEEEccCCCeEEEEcC------CCeEEEEEcCCCceeee-cc
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS--EPVLDVAWIDDGTKVFMAGC------DKTVKCWDLASNQSMQV-AQ  115 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~-~~  115 (356)
                      .+++.++.|+.|.-.|.+++...-........  ..++.--.- -+..++.+..      .|.|+-+|..+|+.+-. ..
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            46888888999999998884322211111111  111110000 1335555543      48999999999987642 10


Q ss_pred             c-------------------------------------CCCe-eEEEEEeCCCCCeEEEEEC----------------CC
Q psy12911        116 H-------------------------------------DAPV-KTCHWIKAPNYTCLMTGSW----------------DK  141 (356)
Q Consensus       116 ~-------------------------------------~~~v-~~~~~~~~~~~~~l~~~~~----------------dg  141 (356)
                      .                                     ...+ ..+.+.  +...++..+..                ..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D--~~~~lvy~~tg~~~p~~~~~r~g~n~ys~  278 (596)
T d1w6sa_         201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD--PGTNLIYFGTGNPAPWNETMRPGDNKWTM  278 (596)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE--TTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred             cCCccccccccccccccccccccccccccCCCCceecCCCccccccccc--cCCCeeecccccccccccccccccccccc
Confidence            0                                     0111 233444  55555555432                24


Q ss_pred             eEEEEeCCCCCceEEEeCCC----------eeEEE---ecCCC---eEEEEecCCeEEEEeCCCCcc
Q psy12911        142 TLKFWDLRTPQPIMTINLPE----------RCYCA---DVDYP---LAVVGTAGRGIVLYQLEGKPQ  192 (356)
Q Consensus       142 ~i~iwd~~~~~~~~~~~~~~----------~~~~~---~~~~~---~~~~~~~d~~i~i~d~~~~~~  192 (356)
                      .|.-.|+++++.+..++...          .....   ..++.   .++....+|.+.++|..+++.
T Consensus       279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~  345 (596)
T d1w6sa_         279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL  345 (596)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCce
Confidence            58889999999988776421          12222   23332   577788899999999988754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.0054  Score=46.82  Aligned_cols=232  Identities=10%  Similarity=-0.065  Sum_probs=129.4

Q ss_pred             EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-CCCeEEEEEcCCCc----eee-ecccCCC
Q psy12911         46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWDLASNQ----SMQ-VAQHDAP  119 (356)
Q Consensus        46 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~----~~~-~~~~~~~  119 (356)
                      +|+.+.. ..|+-.++++....   .+......+.+++|.+..+.|+-.. ..+.|...++....    ... .......
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~---~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~   78 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYT---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA   78 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCE---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred             EEEEECC-CeEEEEECCCCcce---eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCC
Confidence            4444443 35888888763322   2223455678999998877777654 46677777765422    111 2233355


Q ss_pred             eeEEEEEeCCCCCeE-EEEECCCeEEEEeCCCCCceEEEeCC-C--eeEEEecCCCeEEEEe--cCCeEEEEeCCCCccc
Q psy12911        120 VKTCHWIKAPNYTCL-MTGSWDKTLKFWDLRTPQPIMTINLP-E--RCYCADVDYPLAVVGT--AGRGIVLYQLEGKPQE  193 (356)
Q Consensus       120 v~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~  193 (356)
                      +..+++.  +-+..| .+-...+.|.+.++........+... .  ..+++++....++...  ..+.|...++......
T Consensus        79 p~glAvD--~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          79 PDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             CCEEEEE--TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             cceEEEe--eccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            6778887  544444 44455678999998766544444432 2  3455666566665543  3456777777665332


Q ss_pred             cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC
Q psy12911        194 FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH  273 (356)
Q Consensus       194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~  273 (356)
                      ... . ..-.....+++.+..   ..++.+-...+.|...+++....  ...........         ...++++. ++
T Consensus       157 ~l~-~-~~~~~p~gl~iD~~~---~~lYw~d~~~~~I~~~~~dG~~~--~~~~~~~~~~~---------~p~~lav~-~~  219 (266)
T d1ijqa1         157 SLV-T-ENIQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLA---------HPFSLAVF-ED  219 (266)
T ss_dssp             EEE-C-SSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCSC--EEEEECTTTTS---------SEEEEEEE-TT
T ss_pred             ccc-c-cccceeeEEEeeccc---cEEEEecCCcCEEEEEECCCCCE--EEEEeCCCccc---------ccEEEEEE-CC
Confidence            211 1 122445788888762   23444446678888888876432  11122111100         34567776 33


Q ss_pred             CEEEEEcCCCeEEEEEcCcceecCCCC
Q psy12911        274 GTLATVGSEGTFSFWDKDARTKLKPSE  300 (356)
Q Consensus       274 ~~l~s~~~dg~i~iwd~~~~~~~~~~~  300 (356)
                      .++.+-..++.|...+..+++....+.
T Consensus       220 ~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         220 KVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEEEECCCCeEEEEECCCCcceEEEE
Confidence            444555577888888877776544443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.70  E-value=0.0088  Score=51.26  Aligned_cols=73  Identities=8%  Similarity=0.099  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCCeEEEEEcCcceecCCCCCC----ccceEEEEECCCCC-EEEEEeccC--CcCCCccCCCCCCceeeec
Q psy12911        272 VHGTLATVGSEGTFSFWDKDARTKLKPSEAM----DMSISTCALNHNGQ-IFAYAVSYD--WSKGHEHNNPNKGNAIFLR  344 (356)
Q Consensus       272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~-~l~~~s~~d--~~~~~~~~~~~~~~~~~~~  344 (356)
                      .|.++++|+.||.++.+|.++|+.+.+++..    ..+   +.|..||+ ||+..++.+  +...........+..++..
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F  563 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTF  563 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence            5678888999999999999999999876532    223   44566886 666666533  1111122333445667766


Q ss_pred             ccc
Q psy12911        345 PCF  347 (356)
Q Consensus       345 ~~~  347 (356)
                      ++.
T Consensus       564 ~l~  566 (573)
T d1kb0a2         564 VVG  566 (573)
T ss_dssp             EET
T ss_pred             EeC
Confidence            654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.68  E-value=0.0058  Score=46.52  Aligned_cols=226  Identities=11%  Similarity=0.091  Sum_probs=140.4

Q ss_pred             CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEE
Q psy12911         97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVG  176 (356)
Q Consensus        97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (356)
                      ..+|.+.|+.........  .-..-+.-.+  |..+.|+.-+ ..++.++|+++.+.++.+..++.+..+.|-.+..+.-
T Consensus        44 ~~~VvIidl~n~~~~~Rr--pi~AdsAIMh--P~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~l  118 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRR--PISADSAIMN--PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL  118 (327)
T ss_dssp             EEEEEEEETTSTTSCEEE--ECCCSEEEEC--SSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEE
T ss_pred             CceEEEEECCCCCcceec--ccchhhhhcC--CCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEE
Confidence            457889999765533211  1122344456  7777777766 5689999999999999999999999999988877777


Q ss_pred             ecCCeEEEEeCCCCccccccccCc---ccccceEEEeecCCCCCCCeEEEee-------cCCeEEEEEeCCCCCCCccee
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESP---LKYQNRCIAIFRDKKKQPAGYGLGS-------VEGRVAIQYVNPANPKDNFTF  246 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~-------~dg~i~i~~~~~~~~~~~~~~  246 (356)
                      -.+..|+-|++++...+.+.....   ...+|-....+++    .++++..+       -.|.+.+|..+.   +..+.+
T Consensus       119 VT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~----~kW~~l~GI~~~~~~i~G~mQLYS~er---~~sQ~i  191 (327)
T d1utca2         119 VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK----QKWLLLTGISAQQNRVVGAMQLYSVDR---KVSQPI  191 (327)
T ss_dssp             ECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTT----SCEEEEEEEEEETTEEEEEEEEEETTT---TEEEEE
T ss_pred             EcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCC----CCEEEEEeEecCCCceeEEEEEEEecc---CcCccc
Confidence            777889999997655444443322   2356667777777    44554432       236678888865   445667


Q ss_pred             eeecCCCCCCCcccccceEEEEEeCCC---CEEEEE---cCCCeEEEEEcCccee-cCCC-----------CCCccceEE
Q psy12911        247 KCHRSNGGAGGVQDIYAVNGIVFHPVH---GTLATV---GSEGTFSFWDKDARTK-LKPS-----------EAMDMSIST  308 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~---~~l~s~---~~dg~i~iwd~~~~~~-~~~~-----------~~~~~~v~~  308 (356)
                      ++|..           ....+.+..+.   .+++.+   ...+.++|.++..... -..+           +.-.+-..+
T Consensus       192 eGhaa-----------~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPva  260 (327)
T d1utca2         192 EGHAA-----------SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA  260 (327)
T ss_dssp             CCSEE-----------EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEE
T ss_pred             cceee-----------eeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEE
Confidence            77764           22222221111   122222   2347899999865311 0111           111333456


Q ss_pred             EEECCCCCEEEEEeccCCcCCCccCCCCCCceeeeccccc
Q psy12911        309 CALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFE  348 (356)
Q Consensus       309 ~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~  348 (356)
                      +..|+.-..+..-+..++   .-.|+.+.+.++|...+..
T Consensus       261 mqvs~kygiiyviTK~G~---i~lyDleTgt~i~~nRIs~  297 (327)
T d1utca2         261 MQISEKHDVVFLITKYGY---IHLYDLETGTCIYMNRISG  297 (327)
T ss_dssp             EEEETTTTEEEEEETTSE---EEEEETTTCCEEEEEECCS
T ss_pred             EEeeccCCEEEEEecCcE---EEEEEcccccEEEEeecCC
Confidence            667766666666665443   3457777788888777653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.54  E-value=0.019  Score=48.88  Aligned_cols=77  Identities=9%  Similarity=0.059  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCCCeEEEEEcCcceecCCCCCCcc-ceEEEEECCCCC-EEEEEeccC----C--cCCCccCCCCCCceeee
Q psy12911        272 VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDM-SISTCALNHNGQ-IFAYAVSYD----W--SKGHEHNNPNKGNAIFL  343 (356)
Q Consensus       272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~-~l~~~s~~d----~--~~~~~~~~~~~~~~~~~  343 (356)
                      .+.++++|+.||.++-+|.++|+.+.+++.... .-.-+.|..||+ ||++.++..    .  ......+....+..++.
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~  547 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLV  547 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEE
Confidence            467888899999999999999999987653221 111245567885 666666533    1  11122344455678888


Q ss_pred             ccccc
Q psy12911        344 RPCFE  348 (356)
Q Consensus       344 ~~~~~  348 (356)
                      ..+..
T Consensus       548 F~L~g  552 (560)
T d1kv9a2         548 FALDG  552 (560)
T ss_dssp             EEETC
T ss_pred             EEeCC
Confidence            88774

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=0.011  Score=44.85  Aligned_cols=245  Identities=7%  Similarity=-0.064  Sum_probs=140.4

Q ss_pred             eEEEEEeCCCeEEEEeccCCCce---eeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCCCceeeec-ccCCC
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKT---IPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLASNQSMQVA-QHDAP  119 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~-~~~~~  119 (356)
                      .+|+.+.. +.|+-.+++.....   ....+..+...+.+++|.+..+.|+-. ..++.|+..++..+....+. .....
T Consensus         2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~   80 (263)
T d1npea_           2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (263)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence            45555543 47777777653211   112233445568889999877777765 44688999998876655433 33457


Q ss_pred             eeEEEEEeCCCCCeEE-EEECCCeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEecC---CeEEEEeCCCCcc
Q psy12911        120 VKTCHWIKAPNYTCLM-TGSWDKTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGTAG---RGIVLYQLEGKPQ  192 (356)
Q Consensus       120 v~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~~  192 (356)
                      +.++++.  .-+..|. +-...+.|.+.++........+...   ...+++++....++.....   ..|...++.....
T Consensus        81 p~~iAvD--~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          81 PEGIALD--HLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             EEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccEEEEe--ccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            8889987  5455554 4455678999998765443333221   1345666666666654332   3455556665432


Q ss_pred             ccccccCcccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeC
Q psy12911        193 EFKKTESPLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP  271 (356)
Q Consensus       193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp  271 (356)
                      ....  ...-.....+++.+.    ...| .+-...+.|...+++....  ...+.+..            ...+|++. 
T Consensus       159 ~~i~--~~~~~~P~glaiD~~----~~~lYw~d~~~~~I~~~~~~g~~~--~~v~~~~~------------~P~~lav~-  217 (263)
T d1npea_         159 RILA--QDNLGLPNGLTFDAF----SSQLCWVDAGTHRAECLNPAQPGR--RKVLEGLQ------------YPFAVTSY-  217 (263)
T ss_dssp             EEEE--CTTCSCEEEEEEETT----TTEEEEEETTTTEEEEEETTEEEE--EEEEECCC------------SEEEEEEE-
T ss_pred             eeee--eecccccceEEEeec----CcEEEEEeCCCCEEEEEECCCCCe--EEEECCCC------------CcEEEEEE-
Confidence            2211  112234578888877    4445 4445677888888765421  11122211            23577775 


Q ss_pred             CCCEEEEEcCCCeEEEEEcCcceecCCCCC-CccceEEEEECC
Q psy12911        272 VHGTLATVGSEGTFSFWDKDARTKLKPSEA-MDMSISTCALNH  313 (356)
Q Consensus       272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~  313 (356)
                      ++.+..+-...+.|...|..+++.+..+.. ......+++..+
T Consensus       218 ~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         218 GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            344445555678899999988876654432 222344554433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.42  E-value=0.0089  Score=48.05  Aligned_cols=193  Identities=12%  Similarity=0.044  Sum_probs=118.5

Q ss_pred             EEEecC---CCCCceEEEEEe-CCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc--CCCeEEEEcCC----------
Q psy12911         34 CMAFSP---STLPQYFLIAGS-WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID--DGTKVFMAGCD----------   97 (356)
Q Consensus        34 ~~~~~~---~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d----------   97 (356)
                      .+.+..   ||   ++|++.. .+..|.+-|+++.....+..+ .....+..+...+  +..|++..+.+          
T Consensus        89 ~~S~TdGtyDG---rylFVNDkan~RVAvIdl~~fkt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~  164 (459)
T d1fwxa2          89 HMSFTEGKYDG---RFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN  164 (459)
T ss_dssp             EEEEETTEEEE---EEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred             cccccCCccce---eEEEEEcCCCceEEEEECcceeeeEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCcc
Confidence            455544   67   8887776 578999999988433222233 3455667777654  45577776653          


Q ss_pred             --------CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC-----------------------------
Q psy12911         98 --------KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD-----------------------------  140 (356)
Q Consensus        98 --------g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----------------------------  140 (356)
                              +.+.++|..+.+......-......+.++  ++|+++++.+.+                             
T Consensus       165 l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s--~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~a  242 (459)
T d1fwxa2         165 MEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDAD--YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  242 (459)
T ss_dssp             TTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEEC--SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             ccchhhcceEEEEEecCCceEEEEeeeCCChhccccC--CCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHh
Confidence                    23677898888776544445567788898  999998887743                             


Q ss_pred             ---------CeEEEEeCCCC---CceEEEeCCC--eeEEEecCCCeEEEEe-cCCeEEEEeCCCCcccc---------cc
Q psy12911        141 ---------KTLKFWDLRTP---QPIMTINLPE--RCYCADVDYPLAVVGT-AGRGIVLYQLEGKPQEF---------KK  196 (356)
Q Consensus       141 ---------g~i~iwd~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~---------~~  196 (356)
                               +.+.+-|.+..   ..++.+..+.  ..+.+++++.++++++ -+.++.++|++.-....         ..
T Consensus       243 v~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~  322 (459)
T d1fwxa2         243 IAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  322 (459)
T ss_dssp             HHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred             hhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence                     12344444331   2333333222  3467788888766654 58999999997532111         01


Q ss_pred             ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911        197 TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN  236 (356)
Q Consensus       197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  236 (356)
                      ......-.....+|...    +....+---|..|.-|++.
T Consensus       323 ~e~elglgPLht~fd~~----g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         323 AEPELGLGPLHTAFDGR----GNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             ECCBCCSCEEEEEECTT----SEEEEEETTTTEEEEEEHH
T ss_pred             eecccCcCccccccCCC----ceEEEEeeccceEEEEecc
Confidence            11122333455566555    5556666689999999984

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.21  E-value=0.026  Score=42.92  Aligned_cols=229  Identities=11%  Similarity=0.148  Sum_probs=132.2

Q ss_pred             CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCe
Q psy12911         54 NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTC  133 (356)
Q Consensus        54 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  133 (356)
                      .+|.|-|+..+.....+.+.     --+.-.+|..+.||.-+ ..++.++|+++.+.+......++|.--.|.  . .+.
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~-----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWi--s-~~~  115 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--S-LNT  115 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECC-----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEES--S-SSE
T ss_pred             ceEEEEECCCCCcceecccc-----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEec--C-CCE
Confidence            47889998774443323332     12334568777776655 568999999999998877778888888885  4 455


Q ss_pred             EEEEECCCeEEEEeCCCC-CceEEEeCCC-----eeEEE--ecCCCeEEEE---ec----CCeEEEEeCCCCcccccccc
Q psy12911        134 LMTGSWDKTLKFWDLRTP-QPIMTINLPE-----RCYCA--DVDYPLAVVG---TA----GRGIVLYQLEGKPQEFKKTE  198 (356)
Q Consensus       134 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~-----~~~~~--~~~~~~~~~~---~~----d~~i~i~d~~~~~~~~~~~~  198 (356)
                      |+..+ +..|+-|+++.. ++.+.+..+.     .++..  +.+.++++..   ..    .|.+.+|..+.+....   .
T Consensus       116 L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~---i  191 (327)
T d1utca2         116 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---I  191 (327)
T ss_dssp             EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE---E
T ss_pred             EEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcc---c
Confidence            55555 467999999543 5777777654     34443  4444544332   22    3788899988753211   1


Q ss_pred             CcccccceEEEeecCCCCCC-CeEEEee---cCCeEEEEEeCCCC-CCCcceeeeecCCCCCCCcccccceEEEEEeCCC
Q psy12911        199 SPLKYQNRCIAIFRDKKKQP-AGYGLGS---VEGRVAIQYVNPAN-PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH  273 (356)
Q Consensus       199 ~~~~~~i~~~~~~~~~~~~~-~~~~~~~---~dg~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~  273 (356)
                      ..|-..-..+.+  ++.... ..++.+.   ..+++++.++.... .......+.-.-..+.. .... ---++..|+..
T Consensus       192 eGhaa~F~~~~~--~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe-a~~D-FPvamqvs~ky  267 (327)
T d1utca2         192 EGHAASFAQFKM--EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE-AQND-FPVAMQISEKH  267 (327)
T ss_dssp             CCSEEEEEEECC--TTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT-CTTC-CEEEEEEETTT
T ss_pred             cceeeeeEEEEc--CCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcc-ccCC-cEEEEEeeccC
Confidence            111111111111  111111 2222222   23678888876532 12222222111111111 1111 23478888888


Q ss_pred             CEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911        274 GTLATVGSEGTFSFWDKDARTKLKPS  299 (356)
Q Consensus       274 ~~l~s~~~dg~i~iwd~~~~~~~~~~  299 (356)
                      ..+..-+.-|.|++||++++.++..-
T Consensus       268 giiyviTK~G~i~lyDleTgt~i~~n  293 (327)
T d1utca2         268 DVVFLITKYGYIHLYDLETGTCIYMN  293 (327)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CEEEEEecCcEEEEEEcccccEEEEe
Confidence            89999999999999999999887543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.03  E-value=0.026  Score=48.11  Aligned_cols=78  Identities=4%  Similarity=0.022  Sum_probs=55.2

Q ss_pred             CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe----eEEEecCCC-e
Q psy12911         98 KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER----CYCADVDYP-L  172 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~-~  172 (356)
                      |.|.-||+.+++.+-......+..+-.+.  ..+.+++.|+.||.++.+|.++|+.+.+++.+..    .+....++. +
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~--TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLS--TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEE--ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeE--ECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            56888999999887644444444433344  5567888999999999999999999999987653    344456664 4


Q ss_pred             EEEEe
Q psy12911        173 AVVGT  177 (356)
Q Consensus       173 ~~~~~  177 (356)
                      +++..
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.78  E-value=0.13  Score=43.91  Aligned_cols=54  Identities=13%  Similarity=0.147  Sum_probs=38.5

Q ss_pred             eCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccc-eEEEEECCCCC-EEEEEec
Q psy12911        270 HPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMS-ISTCALNHNGQ-IFAYAVS  323 (356)
Q Consensus       270 sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~-~l~~~s~  323 (356)
                      +-.|.++++|+.||.++-+|.++|+.+.+++-.... -.-+.|..+|+ ||+..++
T Consensus       494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ag  549 (582)
T d1flga_         494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             EEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeC
Confidence            345778888999999999999999999877532211 11256778884 6666654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.69  E-value=0.029  Score=47.91  Aligned_cols=77  Identities=9%  Similarity=0.028  Sum_probs=51.8

Q ss_pred             CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe----eEEEecCCC-e
Q psy12911         98 KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER----CYCADVDYP-L  172 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~-~  172 (356)
                      |.|.-+|+.+++.+-......+..+-...  ..+.++++++.||.++.+|.++++.+.+++.+..    .+....++. +
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~--TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLY--TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEE--ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeE--ecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence            46777888888877544333333332233  4566888899999999999999999999987653    344445564 4


Q ss_pred             EEEE
Q psy12911        173 AVVG  176 (356)
Q Consensus       173 ~~~~  176 (356)
                      +++.
T Consensus       522 i~v~  525 (571)
T d2ad6a1         522 IGSM  525 (571)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.69  E-value=0.052  Score=46.32  Aligned_cols=77  Identities=14%  Similarity=0.117  Sum_probs=52.4

Q ss_pred             CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe----eEEEecCCC-e
Q psy12911         98 KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER----CYCADVDYP-L  172 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~-~  172 (356)
                      |.+.-||+.+++.+-...+..+...-..+  ..+.++++|+.||.++.+|.++|+.+.+++.+..    .+....++. +
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~ls--tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLT--TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEE--ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEE--EcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            35777888888777644444333332333  5677888999999999999999999999987653    344445664 4


Q ss_pred             EEEE
Q psy12911        173 AVVG  176 (356)
Q Consensus       173 ~~~~  176 (356)
                      +++.
T Consensus       535 v~v~  538 (573)
T d1kb0a2         535 VSVA  538 (573)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.67  E-value=0.086  Score=45.11  Aligned_cols=76  Identities=12%  Similarity=0.053  Sum_probs=54.1

Q ss_pred             CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe----eEEEecCCC-e
Q psy12911         98 KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER----CYCADVDYP-L  172 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~-~  172 (356)
                      |.|.-||+.+++.+-...+..+..+-.++  ..+.+++.|+.||.++.+|.++|+.+.+++.+..    .+....++. +
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~ls--TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMA--TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEE--ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeE--ecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEE
Confidence            56888888888876544444444444444  5667888899999999999999999999986653    344455664 4


Q ss_pred             EEE
Q psy12911        173 AVV  175 (356)
Q Consensus       173 ~~~  175 (356)
                      +++
T Consensus       531 vav  533 (596)
T d1w6sa_         531 VAI  533 (596)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.37  E-value=0.094  Score=37.44  Aligned_cols=222  Identities=11%  Similarity=0.114  Sum_probs=118.3

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCC-CeEEEE------cCCCeEEEEEcCC-Cceeeeccc
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG-TKVFMA------GCDKTVKCWDLAS-NQSMQVAQH  116 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~------~~dg~i~vwd~~~-~~~~~~~~~  116 (356)
                      ++|+++...|.+.++-+..+. ..  .+  ...+|....--..+ .++..+      -.-..|.+-++.. |+..++...
T Consensus        27 ~ll~~~~seG~vni~~l~g~~-~v--kL--tkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          27 KLLVVGFSEGSVNAYLYDGGE-TV--KL--NREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             EEEEEEEETTEEEEEEESSSS-CE--EC--CSSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred             cEEEEEeccceEEEEEEeCCE-EE--EE--ecccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence            688888889999999887632 21  12  33454433221111 112111      1122344444431 233332222


Q ss_pred             C-CCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEE-------------EEec-CCe
Q psy12911        117 D-APVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAV-------------VGTA-GRG  181 (356)
Q Consensus       117 ~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-d~~  181 (356)
                      . -.|.+++.   .+.+..++|+......+|-++.++..+-...+.-.+..+..+++++             ++.- .|.
T Consensus       102 k~vRI~S~~y---ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~  178 (313)
T d2hu7a1         102 KPMRILSGVD---TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG  178 (313)
T ss_dssp             CSBEEEEEEE---CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEE
T ss_pred             ceEEEEEeee---cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCC
Confidence            2 45666666   5667888888888889998888876665555555555555554332             2222 445


Q ss_pred             EEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-CeEE--EEEeCCCCCC----CcceeeeecCCCC
Q psy12911        182 IVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-GRVA--IQYVNPANPK----DNFTFKCHRSNGG  254 (356)
Q Consensus       182 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-g~i~--i~~~~~~~~~----~~~~~~~~~~~~~  254 (356)
                      +++++..             .+.++.....+.     ..++++... |.-+  -+|+..+...    +.+.+...+.   
T Consensus       179 lri~tpk-------------eGS~~~ay~~~g-----nKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p---  237 (313)
T d2hu7a1         179 LRVFDSG-------------EGSFSSASISPG-----MKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRP---  237 (313)
T ss_dssp             EEEECCS-------------SEEEEEEEECTT-----SCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCC---
T ss_pred             EEEecCC-------------CCcccceeEccC-----ceeeeccCCCCceEEEEEecccCceeeeecCcccceeecc---
Confidence            5555433             344555555555     223333221 2222  2233322110    0111111110   


Q ss_pred             CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCcc
Q psy12911        255 AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDM  304 (356)
Q Consensus       255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  304 (356)
                             -.|+.+-+.|++++++.+-.||.=++|.  +|+.+...++..+
T Consensus       238 -------~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~p~G~~~  278 (313)
T d2hu7a1         238 -------TAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEAPQGNHG  278 (313)
T ss_dssp             -------SEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECCCSSEEE
T ss_pred             -------eEEEeeeeCCCCcEEEEEecCCchheee--cceEecCCCCccc
Confidence                   1577788999999999999999999997  4677766655433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.25  E-value=0.14  Score=43.56  Aligned_cols=76  Identities=13%  Similarity=0.093  Sum_probs=54.4

Q ss_pred             CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe----eEEEecCCC-e
Q psy12911         98 KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER----CYCADVDYP-L  172 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~-~  172 (356)
                      |.|.-+|+.+++.+-......++..-..+  ..+.++++|+.||.++.+|.++|+.+.+++.+..    .+....++. +
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~ls--tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLA--TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEE--ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeE--EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            56888888888877644444444433344  5667888899999999999999999999987653    355556664 4


Q ss_pred             EEE
Q psy12911        173 AVV  175 (356)
Q Consensus       173 ~~~  175 (356)
                      +++
T Consensus       544 v~i  546 (582)
T d1flga_         544 LGV  546 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.18  E-value=0.24  Score=40.27  Aligned_cols=76  Identities=13%  Similarity=0.133  Sum_probs=51.4

Q ss_pred             CCcceeEEEEccCCCeEEEEc-----CCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC---------
Q psy12911         75 MSEPVLDVAWIDDGTKVFMAG-----CDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD---------  140 (356)
Q Consensus        75 ~~~~v~~~~~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------  140 (356)
                      +.-.+...++||++++++.+-     ....++++|+.+++.+...-.......+.|.  ++++.|+....+         
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~--~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWT--HDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEEC--TTSSEEEEEECCCCSSCCSSS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEc--CCCCEEEEEEeccccCccccc
Confidence            334456678899999888532     2347999999999877522122223578898  898888765433         


Q ss_pred             -------CeEEEEeCCCCC
Q psy12911        141 -------KTLKFWDLRTPQ  152 (356)
Q Consensus       141 -------g~i~iwd~~~~~  152 (356)
                             ..|..+.+.+..
T Consensus       201 ~~~~~~~~~v~~h~lgt~~  219 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQ  219 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCG
T ss_pred             ccccCCcceEEEEECCCCc
Confidence                   258888887763

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.21  Score=37.51  Aligned_cols=198  Identities=8%  Similarity=-0.055  Sum_probs=115.4

Q ss_pred             eCCCCCCeeEEEecCCCCCceEEEEE-eCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEE
Q psy12911         25 VSPPEDSISCMAFSPSTLPQYFLIAG-SWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKC  102 (356)
Q Consensus        25 ~~~h~~~V~~~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v  102 (356)
                      +..+...+.+++|.+..   +.|+-. ..++.|+..+++.....  ..+......+.++++..-++.|+.+ ...+.|.+
T Consensus        31 ~~~~~~~~~~ld~D~~~---~~iywsd~~~~~I~~~~l~g~~~~--~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~  105 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVD---KVVYWTDISEPSIGRASLHGGEPT--TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEV  105 (263)
T ss_dssp             EEEEEEEEEEEEEETTT---TEEEEEETTTTEEEEEESSSCCCE--EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccCCCcEEEEEEEeCC---CEEEEEECCCCeEEEEEcccCCcE--EEEEeccccccEEEEeccCCeEEEeccCCCEEEE
Confidence            33445568889999876   555554 55678888888763322  2233233568899998766666644 45789999


Q ss_pred             EEcCCCceeeec-ccCCCeeEEEEEeCCCCCeEEEEECC---CeEEEEeCCCCCceEEEeCC-C--eeEEEecCCCeEEE
Q psy12911        103 WDLASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWD---KTLKFWDLRTPQPIMTINLP-E--RCYCADVDYPLAVV  175 (356)
Q Consensus       103 wd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~  175 (356)
                      .++.......+. ........+++.  |...+++.....   ..|.--++............ .  ..++++...+.++.
T Consensus       106 ~~~dg~~~~~l~~~~l~~p~~l~vd--p~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw  183 (263)
T d1npea_         106 AKMDGTQRRVLFDTGLVNPRGIVTD--PVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEEE--TTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred             EecCCceEEEEecccccCCcEEEEe--cccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEE
Confidence            999876654433 234678899998  655555544322   23544555444333333221 1  35667777777766


Q ss_pred             E-ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        176 G-TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       176 ~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                      + ...+.|...++..........  ... ....+++..     +..+.+-...+.|...+...
T Consensus       184 ~d~~~~~I~~~~~~g~~~~~v~~--~~~-~P~~lav~~-----~~lYwtd~~~~~I~~~~~~~  238 (263)
T d1npea_         184 VDAGTHRAECLNPAQPGRRKVLE--GLQ-YPFAVTSYG-----KNLYYTDWKTNSVIAMDLAI  238 (263)
T ss_dssp             EETTTTEEEEEETTEEEEEEEEE--CCC-SEEEEEEET-----TEEEEEETTTTEEEEEETTT
T ss_pred             EeCCCCEEEEEECCCCCeEEEEC--CCC-CcEEEEEEC-----CEEEEEECCCCEEEEEECCC
Confidence            6 456889999987654322211  111 234666652     23444444556665555543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.75  E-value=0.32  Score=38.07  Aligned_cols=183  Identities=13%  Similarity=0.152  Sum_probs=97.6

Q ss_pred             eeEEEEEeCCCCCeEEEEEC------------CCeEEEEeCCCCCc-eEEEe--CCC--------eeEEE--ecCCC-eE
Q psy12911        120 VKTCHWIKAPNYTCLMTGSW------------DKTLKFWDLRTPQP-IMTIN--LPE--------RCYCA--DVDYP-LA  173 (356)
Q Consensus       120 v~~~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~-~~~~~--~~~--------~~~~~--~~~~~-~~  173 (356)
                      .-++...  ++|..+++++.            .|.|.++|+.+.+. ...+.  ...        .-+.+  ..++. .|
T Consensus        37 ~EDi~~~--~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          37 SEDLEIL--PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  114 (340)
T ss_dssp             CCEEEEC--TTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred             cceEEEC--CCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence            4456666  77766665532            48899999887642 22222  110        11222  22333 34


Q ss_pred             EEE---ecCCeEEEEeCCCCccccc---cccCcccccceEEEeecCCCCCCCeEEEee---------------cCCeEEE
Q psy12911        174 VVG---TAGRGIVLYQLEGKPQEFK---KTESPLKYQNRCIAIFRDKKKQPAGYGLGS---------------VEGRVAI  232 (356)
Q Consensus       174 ~~~---~~d~~i~i~d~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------~dg~i~i  232 (356)
                      ++.   ....+|.+|++........   ....+.......+++..+    +..+++-.               .-+...+
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~----g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v  190 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP----EHFYATNDHYFIDPYLKSWEMHLGLAWSFV  190 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET----TEEEEEESCSCCSHHHHHHHHHTTCCCEEE
T ss_pred             EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecC----CCEEEecCccCcChhhhhhhHhhcCCceeE
Confidence            444   2457888888865432211   122233345677777777    55555521               0133456


Q ss_pred             EEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEE-EEcCCCeEEEEEcCcceecCCC--CCCccceEEE
Q psy12911        233 QYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLA-TVGSEGTFSFWDKDARTKLKPS--EAMDMSISTC  309 (356)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~-s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~  309 (356)
                      |.++...   .......-.           .-+.|+++||+++|+ +-+..++|++|++.....+...  ..-.+..-.+
T Consensus       191 ~~~~~~~---~~~~~~~l~-----------~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi  256 (340)
T d1v04a_         191 TYYSPND---VRVVAEGFD-----------FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNI  256 (340)
T ss_dssp             EEECSSC---EEEEEEEES-----------SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEE
T ss_pred             EEEcCCc---eEEEcCCCC-----------ccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCcc
Confidence            6665442   222221112           588999999997665 4566789999998743322111  1123455678


Q ss_pred             EECC-CCCEEEEEe
Q psy12911        310 ALNH-NGQIFAYAV  322 (356)
Q Consensus       310 ~~s~-~~~~l~~~s  322 (356)
                      .+.+ +|.+.+.+.
T Consensus       257 ~~d~~~g~lwva~~  270 (340)
T d1v04a_         257 SVDPVTGDLWVGCH  270 (340)
T ss_dssp             EECTTTCCEEEEEE
T ss_pred             EEecCCCEEEEEEC
Confidence            8876 455555543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.32  Score=36.54  Aligned_cols=199  Identities=7%  Similarity=-0.076  Sum_probs=112.5

Q ss_pred             CCCCeeEEEecCCCCCceEEEEE-eCCCeEEEEeccCCC--ceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEE
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAG-SWDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCW  103 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vw  103 (356)
                      ....+.+++|.+..   +.|+-. ..++.|.-.+++...  ......+......+..+++.+-++.|+.+ ...+.|.+.
T Consensus        28 ~~~~~~~id~d~~~---~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~  104 (266)
T d1ijqa1          28 NLRNVVALDTEVAS---NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  104 (266)
T ss_dssp             SCSSEEEEEEETTT---TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCceEEEEEEeCC---CEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeE
Confidence            45567799999877   555554 456677766664311  11112222333567788988766666554 456889999


Q ss_pred             EcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEE--CCCeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEE-
Q psy12911        104 DLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGS--WDKTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVG-  176 (356)
Q Consensus       104 d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-  176 (356)
                      ++....... ..........+++.  |...+|....  ..+.|.-.++............   ...+++++..+.++.+ 
T Consensus       105 ~~~g~~~~~~~~~~~~~P~~l~vd--~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d  182 (266)
T d1ijqa1         105 DTKGVKRKTLFRENGSKPRAIVVD--PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD  182 (266)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEE--TTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             ecCCceEEEEEcCCCCCcceEEEE--cccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEec
Confidence            998766544 44445678899998  6444444433  3346777776544333333221   1456677777767666 


Q ss_pred             ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911        177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN  236 (356)
Q Consensus       177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  236 (356)
                      ...+.|...++.+..................+++..+     ..+.+-..++.|...+..
T Consensus       183 ~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~-----~ly~td~~~~~I~~~~~~  237 (266)
T d1ijqa1         183 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-----KVFWTDIINEAIFSANRL  237 (266)
T ss_dssp             TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-----EEEEEETTTTEEEEEETT
T ss_pred             CCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECC-----EEEEEECCCCeEEEEECC
Confidence            5568899999876543222222112223455666533     334443455665555543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.32  E-value=0.46  Score=37.16  Aligned_cols=188  Identities=11%  Similarity=0.110  Sum_probs=111.7

Q ss_pred             eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc----C--CCeEEEEcC--C--CeEEEEEcCCC--ceee
Q psy12911         45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID----D--GTKVFMAGC--D--KTVKCWDLASN--QSMQ  112 (356)
Q Consensus        45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~----~--~~~l~~~~~--d--g~i~vwd~~~~--~~~~  112 (356)
                      .+++.....+-|.+||++.  +.+ ..+.  .+.++.|..-.    +  ...++.++.  +  .+|.+|.+...  ....
T Consensus        41 SlI~gTdK~~Gl~vYdL~G--~~l-~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLEG--KML-HSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             CEEEEEETTSCCEEEETTC--CEE-EECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             cEEEEEcCcCCEEEEcCCC--cEE-Eecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            6777777777899999964  333 3332  35666655432    2  223555553  2  36888877532  2211


Q ss_pred             ecc-------cCCCeeEEEEEeCCC-CC-eEEEEECCCeEEEEeCCC---C----CceEEEeCCCee--EEEecCCCeEE
Q psy12911        113 VAQ-------HDAPVKTCHWIKAPN-YT-CLMTGSWDKTLKFWDLRT---P----QPIMTINLPERC--YCADVDYPLAV  174 (356)
Q Consensus       113 ~~~-------~~~~v~~~~~~~~~~-~~-~l~~~~~dg~i~iwd~~~---~----~~~~~~~~~~~~--~~~~~~~~~~~  174 (356)
                      +..       ....+..+++...+. +. +++....+|.+..|.+..   +    +.++.+..+...  +.++.....|+
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Ly  195 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLY  195 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEE
Confidence            211       123577888743243 43 466677789988887632   2    345666666544  44555557999


Q ss_pred             EEecCCeEEEEeCCCCccc----c-ccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911        175 VGTAGRGIVLYQLEGKPQE----F-KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP  237 (356)
Q Consensus       175 ~~~~d~~i~i~d~~~~~~~----~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  237 (356)
                      ++-.+..|..++.......    . ..........+..+++.......+-++++.-.+++..+|+...
T Consensus       196 isEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            9999888877776533211    1 1111234567788887765433355666666788899998864

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.23  E-value=0.49  Score=36.94  Aligned_cols=177  Identities=9%  Similarity=0.036  Sum_probs=95.2

Q ss_pred             eeEEEecCCCCCceEEEEEeC------------CCeEEEEeccCCCceee-eeeccC-----CcceeEEEE--ccCCC-e
Q psy12911         32 ISCMAFSPSTLPQYFLIAGSW------------DNNVRCWEVEPNGKTIP-KSMQGM-----SEPVLDVAW--IDDGT-K   90 (356)
Q Consensus        32 V~~~~~~~~~~~~~~l~~~~~------------dg~i~vw~~~~~~~~~~-~~~~~~-----~~~v~~~~~--s~~~~-~   90 (356)
                      --.+...|+|   ..+++++.            .|.|.++|+........ ..+.+.     .-....+..  .++|+ +
T Consensus        37 ~EDi~~~~dg---~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~  113 (340)
T d1v04a_          37 SEDLEILPNG---LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY  113 (340)
T ss_dssp             CCEEEECTTS---EEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEE
T ss_pred             cceEEECCCC---cEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEE
Confidence            3467888998   66665532            48999999876432221 111111     112344444  34565 3


Q ss_pred             EEEE---cCCCeEEEEEcCCCc--eeee--cc--cCCCeeEEEEEeCCCCCeEEEEEC-----------------CCeEE
Q psy12911         91 VFMA---GCDKTVKCWDLASNQ--SMQV--AQ--HDAPVKTCHWIKAPNYTCLMTGSW-----------------DKTLK  144 (356)
Q Consensus        91 l~~~---~~dg~i~vwd~~~~~--~~~~--~~--~~~~v~~~~~~~~~~~~~l~~~~~-----------------dg~i~  144 (356)
                      |++.   ....+|-+|++....  ....  ..  .....+++.+.  .++.+++|-..                 .+.+.
T Consensus       114 L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~--~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         114 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEe--cCCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence            4443   345788888876443  2211  11  23457888888  88887777311                 13344


Q ss_pred             EEeCCCCCceEEEeCCCeeEEEecCCCeEEEE-ecCCeEEEEeCCCCccccccccCcccccceEEEeecC
Q psy12911        145 FWDLRTPQPIMTINLPERCYCADVDYPLAVVG-TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRD  213 (356)
Q Consensus       145 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  213 (356)
                      -||....+.+..--.-.+-++++++++.++++ +..+.|+.|++.................+..+.+.+.
T Consensus       192 ~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~  261 (340)
T d1v04a_         192 YYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPV  261 (340)
T ss_dssp             EECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTT
T ss_pred             EEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecC
Confidence            44433222221111233567788888766555 5578999999976532222212223445566666543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.12  E-value=0.64  Score=37.63  Aligned_cols=243  Identities=13%  Similarity=0.078  Sum_probs=121.4

Q ss_pred             CCCCeeEEEecCCCCCceEEEEE-eCCC----eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-----
Q psy12911         28 PEDSISCMAFSPSTLPQYFLIAG-SWDN----NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-----   97 (356)
Q Consensus        28 h~~~V~~~~~~~~~~~~~~l~~~-~~dg----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----   97 (356)
                      +.-.+..++++|++   +++|.+ +.+|    .|+++|+.++ ..+...+.  ......++|.+|++.|+-...+     
T Consensus       123 ~~~~~~~~~~Spd~---~~la~s~d~~G~e~~~l~v~Dl~tg-~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~  196 (430)
T d1qfma1         123 GTVALRGYAFSEDG---EYFAYGLSASGSDWVTIKFMKVDGA-KELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGK  196 (430)
T ss_dssp             SCEEEEEEEECTTS---SEEEEEEEETTCSCEEEEEEETTTT-EEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred             ccceecceEecCCC---CEEEEEeccccCchheeEEeccCcc-eecccccc--cccccceEEcCCCCEEEEEEeccccCc
Confidence            33345567889999   777644 3333    6999999983 33323332  1223578999999987654322     


Q ss_pred             -----------CeEEEEEcCCCcee---eecccC--CCeeEEEEEeCCCCCeEEEEEC---CCe--EEEEeCCCCC----
Q psy12911         98 -----------KTVKCWDLASNQSM---QVAQHD--APVKTCHWIKAPNYTCLMTGSW---DKT--LKFWDLRTPQ----  152 (356)
Q Consensus        98 -----------g~i~vwd~~~~~~~---~~~~~~--~~v~~~~~~~~~~~~~l~~~~~---dg~--i~iwd~~~~~----  152 (356)
                                 ..|..+.+.+....   .+....  ..+..+..+  .++++++....   +..  +.+.|+....    
T Consensus       197 ~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s--~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~  274 (430)
T d1qfma1         197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS--DDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (430)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             ccccccccCCcceEEEEECCCCccccccccccccCCceEEeeecc--CCcceeeEEeeccCCccEEEEEeeCCCcccccc
Confidence                       36888888776432   222222  335556666  88888765432   223  4455544321    


Q ss_pred             ----ceEEEeCCC-eeEEEecCCCeEEEEe----cCCeEEEEeCCCCccc-cccccCcccccceEEEeecCCCCCCCeEE
Q psy12911        153 ----PIMTINLPE-RCYCADVDYPLAVVGT----AGRGIVLYQLEGKPQE-FKKTESPLKYQNRCIAIFRDKKKQPAGYG  222 (356)
Q Consensus       153 ----~~~~~~~~~-~~~~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  222 (356)
                          ....+.... ....+...+..++.-+    .++.|...++...... ...+..+....+..-.+...    ...++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~----~~~lv  350 (430)
T d1qfma1         275 GILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR----SNFLV  350 (430)
T ss_dssp             SSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEET----TTEEE
T ss_pred             cccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEE----CCEEE
Confidence                112222211 2222333444444332    3467777777654321 11222122333332233222    23455


Q ss_pred             Ee-ecCCe--EEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC----CCeEEEEEcCccee
Q psy12911        223 LG-SVEGR--VAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS----EGTFSFWDKDARTK  295 (356)
Q Consensus       223 ~~-~~dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~----dg~i~iwd~~~~~~  295 (356)
                      .. ..++.  |+++++..+.  ..........           .+..+...++...+...-.    =.++.-+|+.+++.
T Consensus       351 l~~~~~~~~~l~v~~~~~~~--~~~~~~~~~~-----------sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         351 LCYLHDVKNTLQLHDLATGA--LLKIFPLEVG-----------SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEEEETTEEEEEEEETTTCC--EEEEECCCSS-----------EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEEEcCCEeEEEEEECCCCc--EEEecCCCCc-----------eEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            44 45554  5666665442  2111111111           4555554555543332212    26788899988753

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.55  Score=35.29  Aligned_cols=56  Identities=11%  Similarity=0.109  Sum_probs=30.2

Q ss_pred             eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC---------CCeEEEEEcCCCceee
Q psy12911         55 NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC---------DKTVKCWDLASNQSMQ  112 (356)
Q Consensus        55 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~vwd~~~~~~~~  112 (356)
                      .+.+||.+++....+..+......-..+.+  +++.++.|+.         -..+.+||..+.+...
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~   84 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP   84 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccc
Confidence            578999988543333333322222222222  4556666653         1367788887766554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.70  E-value=0.87  Score=37.11  Aligned_cols=36  Identities=8%  Similarity=-0.011  Sum_probs=27.6

Q ss_pred             CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce
Q psy12911        117 DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI  154 (356)
Q Consensus       117 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  154 (356)
                      -...++|+|.  |+++++++--.+|.|++++..+++..
T Consensus        26 L~~P~~la~~--pdg~llVter~~G~i~~v~~~~g~~~   61 (450)
T d1crua_          26 LNKPHALLWG--PDNQIWLTERATGKILRVNPESGSVK   61 (450)
T ss_dssp             CSSEEEEEEC--TTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred             CCCceEEEEe--CCCeEEEEEecCCEEEEEECCCCcEe
Confidence            3567899999  99987776545799999987776543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.45  E-value=0.82  Score=35.71  Aligned_cols=193  Identities=11%  Similarity=0.132  Sum_probs=103.9

Q ss_pred             CCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEE----EecCCC--eEEEEec-C---CeEEEEeCCCCccccccc
Q psy12911        129 PNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYC----ADVDYP--LAVVGTA-G---RGIVLYQLEGKPQEFKKT  197 (356)
Q Consensus       129 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~----~~~~~~--~~~~~~~-d---~~i~i~d~~~~~~~~~~~  197 (356)
                      |+..+++....++-|.+||+ .|+.++.+.... +-+.    +...+.  .+++++. +   .+|.+|.+..........
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSL-EGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEET-TCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             cCccEEEEEcCcCCEEEEcC-CCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            45567777777777999998 588888776433 1111    122222  3444442 2   468888886433222211


Q ss_pred             cC------cccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC-C----CCcceeeeecCCCCCCCcccccceEE
Q psy12911        198 ES------PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN-P----KDNFTFKCHRSNGGAGGVQDIYAVNG  266 (356)
Q Consensus       198 ~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (356)
                      ..      .....+..+++..+......++++...+|.+..|.+.... .    +.+.++....            .+..
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~------------q~EG  184 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNS------------QTEG  184 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSS------------CEEE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCC------------ccce
Confidence            11      1112456666633211112356677788999988774322 1    1222222221            6889


Q ss_pred             EEEeCCCCEEEEEcCCCeEEEEEcCc-----ceecCCCC--CCccceEEEEEC--CCCC-EEEEEeccCCcCCCccCCCC
Q psy12911        267 IVFHPVHGTLATVGSEGTFSFWDKDA-----RTKLKPSE--AMDMSISTCALN--HNGQ-IFAYAVSYDWSKGHEHNNPN  336 (356)
Q Consensus       267 i~~sp~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~--~~~~~v~~~~~s--~~~~-~l~~~s~~d~~~~~~~~~~~  336 (356)
                      |.+.+....|..+-++..|..++.+.     +..+....  ...+.+-.|+.-  .+++ ||++++-.+  ..+.+|+..
T Consensus       185 CVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~--n~f~vydr~  262 (353)
T d1h6la_         185 MAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN--SSYAIYERQ  262 (353)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG--TEEEEEESS
T ss_pred             EEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC--CeEEEEecC
Confidence            99999989999998887776666541     22222221  234566666643  3444 666665433  334444443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.90  E-value=1.1  Score=35.30  Aligned_cols=180  Identities=7%  Similarity=-0.058  Sum_probs=99.5

Q ss_pred             CCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC-----------CCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEe
Q psy12911        118 APVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR-----------TPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQ  186 (356)
Q Consensus       118 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  186 (356)
                      ....-++.+  +...+++.|+.++ +.|..+.           ..........+ ++..+.++++.+++. .++.+..++
T Consensus        37 ~~~~LLAVs--n~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip-~v~~vafs~d~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          37 ASLQNLDIS--NSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIP-DVIFVCFHGDQVLVS-TRNALYSLD  111 (381)
T ss_dssp             SCCBCEEEE--TTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECT-TEEEEEEETTEEEEE-ESSEEEEEE
T ss_pred             cccceEEEe--CCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCC-CeEEEEeeCCEEEEE-eCCCEEEEE
Confidence            456677887  7777888888775 6666532           11222222332 456666667766554 456677787


Q ss_pred             CCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce-e--eeecCCCCCCCcccccc
Q psy12911        187 LEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT-F--KCHRSNGGAGGVQDIYA  263 (356)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~  263 (356)
                      ...-......  ......+..+.+.|.      .++....++.+.++++.......+.. .  ..-..           .
T Consensus       112 ~~~l~~~~~~--~~~~~~~~~~~~~p~------~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~-----------~  172 (381)
T d1xipa_         112 LEELSEFRTV--TSFEKPVFQLKNVNN------TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTN-----------S  172 (381)
T ss_dssp             SSSTTCEEEE--EECSSCEEEEEECSS------EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECS-----------S
T ss_pred             eecccccccc--ccccccccceecCCc------eeEEEecCCCEEEEEeccCccccccCCcceEEecC-----------C
Confidence            7664221111  112344566666554      67788889999999886653211110 0  00111           5


Q ss_pred             eEEEEEeCCCCEEEEEcCCCeEEEE-EcCcceecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911        264 VNGIVFHPVHGTLATVGSEGTFSFW-DKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV  322 (356)
Q Consensus       264 i~~i~~sp~~~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s  322 (356)
                      +.+++|++.|..++++..++ ..+- ++.....+.........|.++.|-.+..++++-+
T Consensus       173 ~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         173 QLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             EEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             ceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence            77788887777777763332 2221 2222111222222345688999998877777654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=1  Score=33.62  Aligned_cols=52  Identities=10%  Similarity=0.068  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCceeeecccC--CCeeEEEEEeCCCCCeEEEEEC---------CCeEEEEeCCCCC
Q psy12911         98 KTVKCWDLASNQSMQVAQHD--APVKTCHWIKAPNYTCLMTGSW---------DKTLKFWDLRTPQ  152 (356)
Q Consensus        98 g~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~  152 (356)
                      ..+.+||+.+++...+..-.  ..-.++..   -++.+++.|+.         -..+.+||..+.+
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~   81 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV---VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ   81 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE---ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEE---ECCEEEEEeCcccCCCCccccchhhhccccccc
Confidence            36889999988755432111  11112222   34566666653         1357788876654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.10  E-value=5.7  Score=31.15  Aligned_cols=138  Identities=8%  Similarity=-0.014  Sum_probs=82.6

Q ss_pred             cceeEEEEccCCCeEEEEcCCCeEEEEEcCC----------CceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEE
Q psy12911         77 EPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS----------NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW  146 (356)
Q Consensus        77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw  146 (356)
                      ....-++.++...++++|+.++ +.|..+..          +........-..|..++|+  .+  .++.. .++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs--~d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFH--GD--QVLVS-TRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEE--TT--EEEEE-ESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEee--CC--EEEEE-eCCCEEEE
Confidence            4466788888777888888765 66766421          1111111122368889987  55  34444 45678888


Q ss_pred             eCCCCCceEEEe-CCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccc---cCcccccceEEEeecCCCCCCCeEE
Q psy12911        147 DLRTPQPIMTIN-LPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT---ESPLKYQNRCIAIFRDKKKQPAGYG  222 (356)
Q Consensus       147 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~  222 (356)
                      +..+-....... .......+.+....+++...++.+.++++..........   .......+.+++|++.    +..++
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~k----gkq~v  186 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDR----SFQSF  186 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTS----CEEEE
T ss_pred             EeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCC----cEEEE
Confidence            877654444333 334566677777888889999999999998764221110   0112244566666665    45555


Q ss_pred             Ee
Q psy12911        223 LG  224 (356)
Q Consensus       223 ~~  224 (356)
                      ++
T Consensus       187 ~~  188 (381)
T d1xipa_         187 AW  188 (381)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.80  E-value=6.6  Score=31.62  Aligned_cols=117  Identities=9%  Similarity=0.119  Sum_probs=67.0

Q ss_pred             CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec------cCCcceeEEEEccC---
Q psy12911         17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ------GMSEPVLDVAWIDD---   87 (356)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~------~~~~~v~~~~~s~~---   87 (356)
                      ..++...+..+-. .-++|+|.|++   ++|++--..|.|++++..++....+..+.      .-......|+|+|+   
T Consensus        15 ~~f~~~~ia~~L~-~P~~la~~pdg---~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~   90 (450)
T d1crua_          15 ENFDKKVILSNLN-KPHALLWGPDN---QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKN   90 (450)
T ss_dssp             TTSCEEEEECCCS-SEEEEEECTTS---CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTT
T ss_pred             CCcEEEEEECCCC-CceEEEEeCCC---eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCcc
Confidence            3455555555544 66799999999   87777655799999987764433333221      12356789999984   


Q ss_pred             CCeEEEEcC-------C----Ce--EEEEEcCCCce--------ee-e-cccCCCeeEEEEEeCCCCCeEEEEEC
Q psy12911         88 GTKVFMAGC-------D----KT--VKCWDLASNQS--------MQ-V-AQHDAPVKTCHWIKAPNYTCLMTGSW  139 (356)
Q Consensus        88 ~~~l~~~~~-------d----g~--i~vwd~~~~~~--------~~-~-~~~~~~v~~~~~~~~~~~~~l~~~~~  139 (356)
                      ..+|+....       +    +.  +..+.......        +. . .........|.|.  +|+.++++.+.
T Consensus        91 n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fg--pDG~LYvs~Gd  163 (450)
T d1crua_          91 NPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG--PDQKIYYTIGD  163 (450)
T ss_dssp             SCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC--TTSCEEEEECC
T ss_pred             CCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEc--CCCCEEEEecC
Confidence            345544211       1    12  33333332211        01 1 1122345788898  89988777664